RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7018
(349 letters)
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 58.3 bits (141), Expect = 5e-11
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSIT------CDTT 91
P PP +L + + T TS+T+SW+ P + G PI YV+E + T
Sbjct: 1 PSPPTNLRV---TDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSET 57
Query: 92 SYQLTGLSPHTTYK 105
SY LTGL P T Y+
Sbjct: 58 SYTLTGLKPGTEYE 71
Score = 51.7 bits (124), Expect = 1e-08
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISK--SKNKNF 280
P P ++ T TS+ L W D+G + Y++E + +GD+KE+ ++
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKG-SGDWKEVEVTPGSETSY 59
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKSADATSV 310
TL+ L P T + FR+ AVN G+S + SV
Sbjct: 60 TLTGLKPGTEYEFRVRAVNGGGESPPSESV 89
Score = 34.8 bits (80), Expect = 0.011
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
G S + LKPGT+Y V+ SE TT
Sbjct: 53 PGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 53.4 bits (128), Expect = 2e-09
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHYVLETSDPAQPSITC----DTT 91
P PP +L + + T TS+T+SW P I+ Y +E + +T
Sbjct: 1 PSPPSNLRV---TDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSST 57
Query: 92 SYQLTGLSPHTTYK 105
SY LTGL P T Y+
Sbjct: 58 SYTLTGLKPGTEYE 71
Score = 46.1 bits (109), Expect = 9e-07
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGA--HVMHYILESDQGNATGDFKEISKSKNKN- 279
P P+ ++ T TS+ L W D+G +++ Y +E + ++KE++ + +
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEG--SEWKEVNVTPSSTS 58
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKS 304
+TL+ L P T + FR+ AVN G+
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 26.4 bits (58), Expect = 6.6
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 164 VSDKGRDGKYKSIYNGEAQ-SCRIQDLKPGTDYAVCVQVH 202
V + ++K + + S + LKPGT+Y V+
Sbjct: 38 VEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAV 77
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 47.4 bits (113), Expect = 3e-07
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 39 GPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQP------SITCDTTS 92
P +LT+ + T TSLT+SWS P +G PI Y +E ++ TTS
Sbjct: 1 SAPTNLTV---TDVTSTSLTLSWSPPPGNG-PITGYEVEYRPVNGGEEWKEITVPGTTTS 56
Query: 93 YQLTGLSPHTTYKSVCQVYLISDK 116
Y LTGL P T Y +V ++
Sbjct: 57 YTLTGLKPGTEY--EVRVQAVNGA 78
Score = 45.5 bits (108), Expect = 1e-06
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 224 DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTL 282
P + T TSL L W+ NG + Y +E N ++KEI+ +TL
Sbjct: 1 SAPTNLTVTDVTSTSLTLSWSPPPGNG-PITGYEVEYRPVNGGEEWKEITVPGTTTSYTL 59
Query: 283 SKLTPSTCFRFRLAAVNQHGKSA 305
+ L P T + R+ AVN G+
Sbjct: 60 TGLKPGTEYEVRVQAVNGAGEGP 82
Score = 28.2 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 179 GEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIAS 211
G S + LKPGT+Y V VQ G S
Sbjct: 52 GTTTSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
>gnl|CDD|221238 pfam11811, DUF3331, Domain of unknown function (DUF3331). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria. Proteins in this
family vary in length from 96 to 160 amino acids.
Length = 96
Score = 28.1 bits (63), Expect = 2.3
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 35 TTPPGPPGSLTLRKTSV----TTPTSLTVSWSEP 64
P S + ++L VSWS+P
Sbjct: 2 RRRHRMPASDPSPLAVTVLERPSDSTLLVSWSDP 35
>gnl|CDD|222786 PHA00371, mat, maturation protein.
Length = 418
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 21 NSAGWSPFSETSVITTPPGPPGSLTLRKTSVT-TPTSLTVSWSEPANHGS 69
F T I T P KT+V TP + T+ W +
Sbjct: 37 YRGKGVWFERTPYIVTDWVHPSPYWRGKTTVEYTPYTFTLRWEGGVDKVP 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.129 0.390
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,903,730
Number of extensions: 1519468
Number of successful extensions: 870
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 16
Length of query: 349
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 251
Effective length of database: 6,590,910
Effective search space: 1654318410
Effective search space used: 1654318410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.8 bits)