RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7018
(349 letters)
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 97.1 bits (242), Expect = 5e-25
Identities = 39/94 (41%), Positives = 60/94 (63%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFK 270
S +FTT CEPD PNPP++ +T+ SL L+W A DNG+ + +++LE D+G G+F
Sbjct: 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFC 65
Query: 271 EISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ K F ++KL+P+ +FRL+A N +G S
Sbjct: 66 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTS 99
Score = 73.2 bits (180), Expect = 3e-16
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 24 GWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD 80
G S S + TT P P + + T SLT+ W P+++GS I ++VLE +
Sbjct: 1 GSSGSSGAEIFTTLSCEPDIPNPPRI---ANRTKNSLTLQWKAPSDNGSKIQNFVLEWDE 57
Query: 81 PA-----QPSITCDTTSYQLTGLSPHTTYK 105
+++T LSP K
Sbjct: 58 GKGNGEFCQCYMGSQKQFKITKLSPAMGCK 87
Score = 36.6 bits (85), Expect = 0.002
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
A N G S FSE T+ P S
Sbjct: 91 SARNDYGTSGFSEEVLYYTSGCSGPSS 117
Score = 31.2 bits (71), Expect = 0.14
Identities = 11/58 (18%), Positives = 20/58 (34%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ +G++ Y G + +I L P + + SE L+ T C
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG 114
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 102 bits (256), Expect = 3e-24
Identities = 46/342 (13%), Positives = 100/342 (29%), Gaps = 39/342 (11%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY 74
A N+ G + P PP +L++ + + L ++W+ P+ IL Y
Sbjct: 176 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL-SSILKLTWTNPSIKSVIILKY 234
Query: 75 VLETSDPAQPS--------ITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQK-----V 121
++ + +S+ + L P T Y V ++ + +
Sbjct: 235 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY--VFRIRCMKEDGKGYWSDWSE 292
Query: 122 DLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEA 181
+ + + + S S W + Y RT Q+ + +
Sbjct: 293 EASGITYEDRPSK-APSFWYKIDPSHTQGY-RTVQLVWKTLPPFEANGKILDYEVTLTRW 350
Query: 182 QSC---------RIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLV 232
+S ++ Y + V A+ T+ K
Sbjct: 351 KSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAF 410
Query: 233 TKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCF 291
L ++W +++ + + SD+ D+++ + ++ + L S C+
Sbjct: 411 P-KDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCY 469
Query: 292 RFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
+ V G S Y + S V+
Sbjct: 470 LITVTPVYADG-------PGSPESIKAYLKQAPPSKGPTVRT 504
Score = 86.6 bits (214), Expect = 8e-19
Identities = 42/314 (13%), Positives = 83/314 (26%), Gaps = 43/314 (13%)
Query: 18 RAGNSAG---WSPFSETSVITTPPGPPGS-----LTLRKTSVTTPTSLTVSWSE--PANH 67
R G WS +SE + T P + + ++ + W P
Sbjct: 277 RCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEA 336
Query: 68 GSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYK--------------SVCQVYLI 113
IL Y + + + +LT + Y +V +
Sbjct: 337 NGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPAC 396
Query: 114 SDKHTQKVDLT---FESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRD 170
+ T V + + L++ P L +
Sbjct: 397 DFQATHPVMDLKAFPKDNMLWVEWTT----PRESVKKYILEWC--------VLSDKAPCI 444
Query: 171 GKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPK 230
++ ++ +L Y + V + G + E P + +
Sbjct: 445 TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG-SPESIKAYLKQAPPSKGPTVR 503
Query: 231 LVTKTRTSLALKWNA--AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPS 288
+ L+W+ + +Y + + S + +TLS LT
Sbjct: 504 TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETAVNVDSSHTEYTLSSLTSD 562
Query: 289 TCFRFRLAAVNQHG 302
T + R+AA G
Sbjct: 563 TLYMVRMAAYTDEG 576
Score = 59.2 bits (143), Expect = 8e-10
Identities = 42/308 (13%), Positives = 82/308 (26%), Gaps = 55/308 (17%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITC---- 88
+ PP P +L+ V + W ++ L++ C
Sbjct: 98 ISGLPPEKPKNLSCI---VNEGKKMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKR 153
Query: 89 --DTTSYQLTGLSPHTTYKSVCQVY---------LISDKHTQKV-----------DLTFE 126
T+ + + I+ KV +
Sbjct: 154 DTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL 213
Query: 127 SDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRI 186
S L L+ S+ + + +RT + S +
Sbjct: 214 SSILKLTWTN-PSIKSVIILKYNIQYRTKDASTWSQIPPE---------DTASTRSSFTV 263
Query: 187 QDLKPGTDYAVCVQVHLEEIVGIASEPT---LFTTPPCEPDQPNP-----PKLVTKTRTS 238
QDLKP T+Y ++ E+ G S+ + T P + T+ +
Sbjct: 264 QDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRT 323
Query: 239 LALKWNAAVDNGAH--VMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLA 296
+ L W A+ ++ Y + + + + L+ + + L
Sbjct: 324 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTV-----NATKLTVNLTNDRYLATLT 378
Query: 297 AVNQHGKS 304
N GKS
Sbjct: 379 VRNLVGKS 386
Score = 53.1 bits (127), Expect = 7e-08
Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 30/234 (12%)
Query: 84 PSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQK-VDLTFE---SDQLYLSGLPNSE 139
I L+ ++V + +IS +K +L+ ++ E
Sbjct: 69 TDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRE 128
Query: 140 WPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCV 199
L T TL + K+ + + V V
Sbjct: 129 -THLETNF-TLKSEW-----------ATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWV 175
Query: 200 QVHLEEIVG-IASEPTLFTTPPCEPDQPNPPKLVT-----KTRTSLALKWNAAVDNGAHV 253
+ E +G + S+ F PNPP ++ + + L L W +
Sbjct: 176 EA--ENALGKVTSDHINFDPVYKVK--PNPPHNLSVINSEELSSILKLTWTNPSIKSVII 231
Query: 254 MHYILE---SDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ Y ++ D + E + S +FT+ L P T + FR+ + + GK
Sbjct: 232 LKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 285
Score = 41.9 bits (98), Expect = 2e-04
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 2/130 (1%)
Query: 175 SIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTK 234
+I N A S D+ C + ++ T+ + P P++P +
Sbjct: 57 TIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP--PEKPKNLSCIVN 114
Query: 235 TRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFR 294
+ +W+ + + + D K +
Sbjct: 115 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVW 174
Query: 295 LAAVNQHGKS 304
+ A N GK
Sbjct: 175 VEAENALGKV 184
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 99.5 bits (248), Expect = 1e-23
Identities = 59/310 (19%), Positives = 100/310 (32%), Gaps = 53/310 (17%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
S ++I P PP L + P ++ V+W+ P + + ++++
Sbjct: 76 YTVKDDKESVPISDTIIPAVP-PPTDLRF---TNIGPDTMRVTWAPPPS--IDLTNFLVR 129
Query: 78 ------TSDPAQPSITCDTTSYQLTGLSPHTTYK---SVCQVYLISDKHTQKV------- 121
D A+ SI+ + LT L P T Y S S +
Sbjct: 130 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSP 189
Query: 122 -DLTFE---SDQLYLSGLPNSEWPSLRTIIL--TLYFRTAQVPGVPPYVSDKGRDGKYKS 175
+ F ++ + W + R I + G P
Sbjct: 190 TGIDFSDITANSFTVH------WIAPRATITGYRIRHHPEHFSGRPREDR---------- 233
Query: 176 IYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKT 235
S + +L PGT+Y V + G P L D P ++V T
Sbjct: 234 -VPHSRNSITLTNLTPGTEYVVSIVAL----NGREESPLLIGQQSTVSDVPRDLEVVAAT 288
Query: 236 RTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFR 294
TSL + W+A V +Y + + +E + +K+ T+S L P +
Sbjct: 289 PTSLLISWDAP---AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTIT 345
Query: 295 LAAVNQHGKS 304
+ AV G S
Sbjct: 346 VYAVTGRGDS 355
Score = 83.7 bits (207), Expect = 3e-18
Identities = 63/319 (19%), Positives = 101/319 (31%), Gaps = 57/319 (17%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-------TSDPAQPSITCD 89
P PP +L L + LTVSW I Y + + + + D
Sbjct: 1 PLSPPTNLHL--EANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEEVVHAD 56
Query: 90 TTSYQLTGLSPHTTYK-SVCQVYLI--SDKHTQKV--------DLTFE---SDQLYLSGL 135
+S LSP Y SV V S + + DL F D + ++
Sbjct: 57 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVT-- 114
Query: 136 PNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDY 195
W +I LT + Y K + + + + + +L PGT+Y
Sbjct: 115 ----WAPPPSIDLTNFLVR--------YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEY 162
Query: 196 AVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMH 255
V V E+ T P T S + W A A +
Sbjct: 163 VVSVSSVYEQHESTPLRGRQKTGLD----SPTGIDFSDITANSFTVHWIAP---RATITG 215
Query: 256 YILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWL 314
Y + + +G +E ++N TL+ LTP T + + A+N +S
Sbjct: 216 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES---------- 265
Query: 315 SYSVYTPEVKGSVPGGVKV 333
+ VP ++V
Sbjct: 266 PLLIGQQSTVSDVPRDLEV 284
Score = 65.2 bits (159), Expect = 5e-12
Identities = 36/213 (16%), Positives = 62/213 (29%), Gaps = 26/213 (12%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ S T P + S T S TV W P + I Y +
Sbjct: 167 SSVYEQHESTPLRGRQ-KTGLDSPTGIDF---SDITANSFTVHWIAPR---ATITGYRIR 219
Query: 78 ------TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLY 131
+ P + + S LT L+P T Y + ++ + + + +S
Sbjct: 220 HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYV--VSIVALNGREESPLLIGQQSTVSD 277
Query: 132 LSGLPNSEWPSLRTIILTLYFRTAQVPGVPP------YVSDKGRDGKYKSIYNGEAQSCR 185
+ + +++++ P V Y G + G +
Sbjct: 278 VPRDLEVVAATPTSLLISW-----DAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTAT 332
Query: 186 IQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
I LKPG DY + V AS +
Sbjct: 333 ISGLKPGVDYTITVYAVTGRGDSPASSKPISIN 365
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 93.7 bits (233), Expect = 4e-22
Identities = 57/299 (19%), Positives = 103/299 (34%), Gaps = 32/299 (10%)
Query: 19 AGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE- 77
A + S E P L K + TPTSL+ W+ P + Y +
Sbjct: 2 AHHHHHHSSGLEVLFQGPAIPAPTDL---KFTQVTPTSLSAQWTPP---NVQLTGYRVRV 55
Query: 78 -----TSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVY--LISDKHTQKVDLTFESD- 128
T + ++ D++S ++GL T Y+ SV + L S V
Sbjct: 56 TPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115
Query: 129 --QLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRI 186
+ ++ + TI ++ +T + G + + +S I
Sbjct: 116 PRRARVTDA------TETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTI 169
Query: 187 QDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAA 246
L+PGTDY + + S P + D P+ + + T SL + W
Sbjct: 170 TGLQPGTDYKIYLYT---LNDNARSSPVVIDAST-AIDAPSNLRFLATTPNSLLVSWQPP 225
Query: 247 VDNGAHVMHYILE-SDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
A + YI++ G+ + + T++ L P T + + A+ + KS
Sbjct: 226 ---RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 70.2 bits (172), Expect = 6e-14
Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 163 YVSDKGRDGKYKSI-YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPC 221
V+ K + G K I ++ S + L T Y V V + + ++ + T
Sbjct: 54 RVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Query: 222 EPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P ++ T T++ + W + + + +++ N + K +++T
Sbjct: 114 SP--PRRARVTDATETTITISWRTKTET---ITGFQVDAVPANGQTPIQRTIKPDVRSYT 168
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
++ L P T ++ L +N + +S+ A
Sbjct: 169 ITGLQPGTDYKIYLYTLNDNARSSPVVIDA 198
Score = 63.3 bits (154), Expect = 2e-11
Identities = 42/203 (20%), Positives = 63/203 (31%), Gaps = 41/203 (20%)
Query: 18 RAGNSAGWSPFSETSVI-TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
A S ++ V PP + + T T++T+SW I + +
Sbjct: 92 YALKDTLTSRPAQGVVTTLENVSPPRRARV---TDATETTITISWRTKT---ETITGFQV 145
Query: 77 E-----TSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVYLI--SDKHTQKV------- 121
+ P Q +I D SY +TGL P T YK + + S
Sbjct: 146 DAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAP 205
Query: 122 -DLTFE---SDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIY 177
+L F + L +S W R I T Y Y +
Sbjct: 206 SNLRFLATTPNSLLVS------WQPPRARI-TGYIIK--------YEKPGSPPREVVPRP 250
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQ 200
I L+PGT+Y + V
Sbjct: 251 RPGVTEATITGLEPGTEYTIYVI 273
Score = 55.2 bits (133), Expect = 8e-09
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
S P K T TSL+ +W + Y + TG
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKTG 62
Query: 268 DFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
KEI+ + + + +S L +T + + A+ S A V
Sbjct: 63 PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 107
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 89.9 bits (223), Expect = 2e-20
Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 48/315 (15%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
S ++I P L+ T +S+ + W+ + S I+ Y +
Sbjct: 77 YTVKDDKESVPISDTIIPEVP-QLTDLSF---VDITDSSIGLRWTPLNS--STIIGYRIT 130
Query: 78 ------TSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVY--LISDKHTQKV------- 121
+ + Y +TGL P Y SV + S T
Sbjct: 131 VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPP 190
Query: 122 -DLTFE---SDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIY 177
DL F D + ++ W +I LT + Y K + +
Sbjct: 191 TDLRFTNIGPDTMRVT------WAPPPSIDLTNFLVR--------YSPVKNEEDVAELSI 236
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRT 237
+ + + +L PGT+Y V V E+ T P T
Sbjct: 237 SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLD----SPTGIDFSDITAN 292
Query: 238 SLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLA 296
S + W A A + Y + + +G +E ++N TL+ LTP T + +
Sbjct: 293 SFTVHWIAPR---ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIV 349
Query: 297 AVNQHGKSADATSVA 311
A+N +S
Sbjct: 350 ALNGREESPLLIGQQ 364
Score = 89.5 bits (222), Expect = 3e-20
Identities = 54/297 (18%), Positives = 94/297 (31%), Gaps = 46/297 (15%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD-------PAQPSITCD 89
P PP +L L + LTVSW I Y + T+ + + D
Sbjct: 2 PLSPPTNLHL--EANPDTGVLTVSWERSTT--PDITGYRITTTPTNGQQGNSLEEVVHAD 57
Query: 90 TTSYQLTGLSPHTTYK-SVCQVYLI--SDKHTQKV--------DLTFE---SDQLYLSGL 135
+S LSP Y SV V S + + DL+F + L
Sbjct: 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLR-- 115
Query: 136 PNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDY 195
W L + + Y T V+ ++ + + L+PG DY
Sbjct: 116 ----WTPLNSSTIIGYRIT--------VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDY 163
Query: 196 AVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMH 255
+ V + + T T P P + ++ + W + +
Sbjct: 164 DISVITLINGGESAPTTLTQQTAVP----PPTDLRFTNIGPDTMRVTWAPP--PSIDLTN 217
Query: 256 YILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+++ D E+S S + N L+ L P T + +++V + +S
Sbjct: 218 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274
Score = 70.6 bits (173), Expect = 1e-13
Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 35/220 (15%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ G S + T PP L + P ++ V+W+ P + + ++++
Sbjct: 168 ITLINGGESAPTTL-TQQTAVPPPTDLRF---TNIGPDTMRVTWAPPPS--IDLTNFLVR 221
Query: 78 ------TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLY 131
D A+ SI+ + LT L P T Y V + ++H ES L
Sbjct: 222 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYV--VSVSSVYEQH--------ESTPLR 271
Query: 132 LSGLPNSEWPS-LRTIILTLYFRTAQVPGVPP----------YVSDKGRDGKYKSIYNGE 180
+ P+ + +T + V + P + + +
Sbjct: 272 GRQKTGLDSPTGIDFSDITA--NSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHS 329
Query: 181 AQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
S + +L PGT+Y V + T
Sbjct: 330 RNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSA 369
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 79.6 bits (196), Expect = 2e-18
Identities = 34/73 (46%), Positives = 43/73 (58%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+S G+DGKYKS+Y GE + + DLKP DY VQ I G SE +FTT CE
Sbjct: 63 LISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCE 122
Query: 223 PDQPNPPKLVTKT 235
PD PNPP++ +
Sbjct: 123 PDIPNPPRISGPS 135
Score = 50.4 bits (120), Expect = 4e-08
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 17/98 (17%)
Query: 22 SAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA---------NHGSPIL 72
S+G S ET S ++ ++WS P+ + +
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKPVA---SDIQARTVVLTWSPPSSLINGETDESSVPELY 58
Query: 73 HYVLETSDPAQPS-----ITCDTTSYQLTGLSPHTTYK 105
Y + S + + T+ L L P Y
Sbjct: 59 GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYH 96
Score = 44.2 bits (104), Expect = 8e-06
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 15/133 (11%)
Query: 210 ASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAH---------VMHYILES 260
+S P ++ L W+ + Y +
Sbjct: 5 SSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64
Query: 261 DQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYT 320
G +K + + N TL+ L P+ + ++ A K + + T
Sbjct: 65 SSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE------IFTT 118
Query: 321 PEVKGSVPGGVKV 333
+ +P ++
Sbjct: 119 LSCEPDIPNPPRI 131
Score = 28.4 bits (63), Expect = 1.8
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
+A ++ SE + TT P
Sbjct: 100 QAEYNSIKGTPSEAEIFTTLSCEP 123
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 82.5 bits (204), Expect = 3e-18
Identities = 56/307 (18%), Positives = 104/307 (33%), Gaps = 45/307 (14%)
Query: 24 GWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEP-ANHGSPILHYVLETSDPA 82
G S P + + + T V W+ P A +L Y L +
Sbjct: 1 GSPGISGGGGGIPVIDGPTQILV---RDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGG 57
Query: 83 QPSIT--CDTTSYQLTGLSPHTTYK---SVCQVYLISDKHTQKV--------DLTFE--- 126
+ + + Y + L P + Y+ S + SD + + +L
Sbjct: 58 KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRT 117
Query: 127 SDQLYLS-GLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCR 185
+ L L +E + + + T + KG G
Sbjct: 118 ATSLDLEWDNSEAEAQEYK-----VVYSTLAGEQYHEVLVPKG---------IGPTTKTT 163
Query: 186 IQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNA 245
+ DL PGT+Y V + + I + T E D P + + TS++L W
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIPATMNART----ELDSPRDLMVTASSETSISLIWTK 219
Query: 246 AVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
A +G + HY + ++G E++ +++ +TL+ L P + + A +S
Sbjct: 220 A--SGP-IDHYRITF--TPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQS 274
Query: 305 ADATSVA 311
++T A
Sbjct: 275 LESTVDA 281
Score = 58.7 bits (142), Expect = 5e-10
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
A ++ S + + T P L + + ++ TS+++ W++ + PI HY +
Sbjct: 178 SAVMNSKQSIPATMNA-RTELDSPRDLMV---TASSETSISLIWTKAS---GPIDHYRIT 230
Query: 78 ----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ ++ ++ D TSY LT L P Y
Sbjct: 231 FTPSSGISSEVTVPRDRTSYTLTDLEPGAEYI 262
Score = 57.1 bits (138), Expect = 1e-09
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL- 76
A S S T TT P +L + T TSL + W + Y +
Sbjct: 86 SAVRGTNESDASSTQF-TTEIDAPKNLRV---GSRTATSLDLEWDNSE---AEAQEYKVV 138
Query: 77 -------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
+ + P TT LT L P T Y
Sbjct: 139 YSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEY 173
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 84.6 bits (208), Expect = 5e-18
Identities = 37/330 (11%), Positives = 87/330 (26%), Gaps = 27/330 (8%)
Query: 21 NSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD 80
+ S+ + T P + + + + + W P++ I HY++
Sbjct: 575 ERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWER 634
Query: 81 PAQPSITCDTTSYQLTGLSPHTTYKSVCQ--------VYLISDKHTQKVDLTFESDQLYL 132
A+ S + P T+ + D + Q+
Sbjct: 635 QAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 694
Query: 133 SGLPNS---EWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDL 189
+S + ++ + + + + + + +S I L
Sbjct: 695 ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGL 754
Query: 190 KPGTDYAVCVQVHLEEIVGIASEPTLF----TTPPCEPDQ-PNPPKLVTKTRTSLALKWN 244
+ T Y + +Q ++ + T P + D P + L W
Sbjct: 755 RHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQ 814
Query: 245 AAVDNGAHVMHYIL---ESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQH 301
+ ++ Y + + + L L+P + R+ A +
Sbjct: 815 EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLA 873
Query: 302 GKSADATSVAEWLSYSVYTPEVKGSVPGGV 331
G + Y + VP +
Sbjct: 874 GNGSWTEPT------YFYVTD-YLDVPSNI 896
Score = 59.2 bits (142), Expect = 8e-10
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 10/153 (6%)
Query: 164 VSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ-----VHLEEIVGIASEPTLFTT 218
V D + + ++ LKP T YA+ V+ G S+ T
Sbjct: 531 VVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT 590
Query: 219 PPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNK 278
P P P V+ + + + LKW D ++ HY++ ++ + +
Sbjct: 591 DATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSEL-----FELD 645
Query: 279 NFTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
PS + + + + +
Sbjct: 646 YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDS 678
Score = 57.2 bits (137), Expect = 4e-09
Identities = 51/391 (13%), Positives = 96/391 (24%), Gaps = 92/391 (23%)
Query: 10 DHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTS--VTTPTSLTVSWSEPANH 67
++ + + G ++ ++ T L K S T+ + + W
Sbjct: 436 LSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPP 495
Query: 68 -GSPILHYVLE---------TSDPAQPSITCDT--------------------TSYQLTG 97
+L ++L T Q + ++ + + G
Sbjct: 496 DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRG 555
Query: 98 LSPHTTYK-SVCQVYLISDKHTQKVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQ 156
L P T Y V + SD+ S+ +Y +T
Sbjct: 556 LKPWTQYAIFVKTLVTFSDERRTYG--------------AKSDI---------IYVQTDA 592
Query: 157 -VPGVPPYVSDK------------------GRDGKYKSIYNGEAQS--------CRIQDL 189
P VP G Y + +A+ C
Sbjct: 593 TNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLK 652
Query: 190 KPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDN 249
P ++ + + + P L +S + + N
Sbjct: 653 LPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD-SQILKELEESSFRKTFEDYLHN 711
Query: 250 G------AHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHG 302
+ + + + + K NK +S L T +R L A NQ
Sbjct: 712 VVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT 771
Query: 303 KSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
SVA ++S + G V
Sbjct: 772 PEER-CSVAAYVSARTMPEAKADDIVGPVTH 801
Score = 47.2 bits (111), Expect = 5e-06
Identities = 32/258 (12%), Positives = 61/258 (23%), Gaps = 44/258 (17%)
Query: 5 CQSCTDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVT--------TPTS 56
S + +S + P + + +
Sbjct: 650 GLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYL 709
Query: 57 LTVSWSEPANHGSPILHYVLETSDPAQPSITCD---TTSYQLTGLSPHTTYK-------S 106
V + + L V + + S ++GL T Y+
Sbjct: 710 HNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQ 769
Query: 107 VCQVYLISDKHTQKVDLTFESDQLYLSGLPNSEWPSLRTIIL---------------TLY 151
S E+ + G E + L +
Sbjct: 770 DTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVS 829
Query: 152 FRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIAS 211
+R + + K + + CR++ L PG Y+V ++ G +
Sbjct: 830 YRRYGDEELHLCDTRK---------HFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWT 879
Query: 212 EPTLFTTPPCEPDQPNPP 229
EPT F D P+
Sbjct: 880 EPTYFYVTD-YLDVPSNI 896
Score = 29.5 bits (65), Expect = 2.2
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 18 RAGNSAGWSPFSETSVITTPPGP--PGSLT 45
RA + AG ++E + P ++
Sbjct: 868 RATSLAGNGSWTEPTYFYVTDYLDVPSNIA 897
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 82.5 bits (203), Expect = 2e-17
Identities = 52/349 (14%), Positives = 99/349 (28%), Gaps = 58/349 (16%)
Query: 18 RAGNSAGWSPFSETSVITT-PPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYV 75
G + ++ PP P L T L + + + N PI+
Sbjct: 241 MIRTEGGVGISNYAELVVKEPPVPIAPPQLASV---GATYLWIQLNANSINGDGPIVARE 297
Query: 76 LE---TSDPAQPSITCDTTSYQLTGL-----------------------SPHTTYKSVCQ 109
+E S D+TSY++ L P ++ C
Sbjct: 298 VEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCA 357
Query: 110 VYLISDKHTQKVDLTFESDQLYLS-GLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKG 168
+ + + V++ S Q+ + + LT+++ +
Sbjct: 358 DPMRGPRKLEVVEVK--SRQITIRWEPFGYNVTRCHSYNLTVHYC-------YQVGGQEQ 408
Query: 169 RDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNP 228
+ I +L P T+ +V + + E S+ + T P
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPT 467
Query: 229 PKLVTKTR-TSLALKWNAAVDNGAHVMHYILE-------SDQGNATGDFKEISKSKNKN- 279
+ T + L+W + Y + + + + +SK N+
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETH 527
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVP 328
F L P T + F + A G AT+ T S+P
Sbjct: 528 FLFFGLYPGTTYSFTIRASTAKGFGPPATN-------QFTTKISAPSMP 569
Score = 76.7 bits (188), Expect = 1e-15
Identities = 42/372 (11%), Positives = 90/372 (24%), Gaps = 95/372 (25%)
Query: 21 NSAGWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHY 74
G T P P L + + +T+ W +
Sbjct: 339 GEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVK---SRQITIRWEPFGYNVTRCHSYNL 395
Query: 75 VLE----------TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDK-------- 116
+ + + +T LSP+T ++ L++ +
Sbjct: 396 TVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVS--VKLILMNPEGRKESQEL 453
Query: 117 ------------HTQKVDLTFESDQLYLSGLPNSEWPSLRTIIL--TLYFRTAQVPGVPP 162
T+ + + ++++L +I + ++
Sbjct: 454 IVQTDEDLPGAVPTESIQGSTFEEKIFLQWRE---PTQTYGVITLYEITYKAVSSFDPEI 510
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+S++ + G L PGT Y+ ++ + G + FTT
Sbjct: 511 DLSNQSG----RVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQ-FTTKISA 565
Query: 223 PDQP--NPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGN---------------- 264
P P + +T ++ + A GA V Y + ++
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPV 625
Query: 265 --------------------------ATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAV 298
A F + + L P +R A
Sbjct: 626 PIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAA 685
Query: 299 NQHGKSADATSV 310
++ V
Sbjct: 686 SRANGETKIDCV 697
Score = 66.0 bits (160), Expect = 6e-12
Identities = 36/276 (13%), Positives = 65/276 (23%), Gaps = 67/276 (24%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS-LTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
N G S+ ++ T PG+ T T + + W EP I Y +
Sbjct: 440 ILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEI 498
Query: 77 E-------------TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHT----- 118
++ + S + T + GL P TTY + + K
Sbjct: 499 TYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYS--FTIRASTAKGFGPPAT 556
Query: 119 ----------------QKVDLTFESDQLYLSGLPNSEWPS-------------------- 142
+ L + + + P +
Sbjct: 557 NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKT 616
Query: 143 ---LRTIILTLYFRTAQVPGVPPYV------SDKGRDGKYKSIYNGEAQSCRIQDLKPGT 193
L+ + ++F+ A + Y + N L P
Sbjct: 617 TEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYK 676
Query: 194 DYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPP 229
Y + Q + T +P P
Sbjct: 677 SYRIYFQAASRANGETKIDCVQVATKGAATPKPVPE 712
Score = 61.7 bits (149), Expect = 1e-10
Identities = 47/347 (13%), Positives = 92/347 (26%), Gaps = 28/347 (8%)
Query: 10 DHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS 69
++V E G+ E V+ P +
Sbjct: 134 FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV 193
Query: 70 PILHYVLETSDPAQP--------SITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKV 121
L+ D S S+ + + K C +
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253
Query: 122 DLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPG-VPPY-VSDKGRDGKYKSIYNG 179
+ P + + L + G + V G +
Sbjct: 254 AELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPV 313
Query: 180 EAQSCRIQDLKPGTDYAVCVQVHLEEIVGI--ASEPTLFTTPPCEPDQ-PNPPKLVTKTR 236
++ S +I L P T+Y + V + G T +P + P ++V
Sbjct: 314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKS 373
Query: 237 TSLALKWNAAVDNG--AHVMHYILE-----SDQGNATGDFKEISKSKNKNFTLSKLTPST 289
+ ++W N H + + Q + +++ + T++ L+P T
Sbjct: 374 RQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYT 433
Query: 290 CFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE-VKGSVPGGVKVFA 335
+L +N G+ E V T E + G+VP +
Sbjct: 434 NVSVKLILMNPEGRK-------ESQELIVQTDEDLPGAVPTESIQGS 473
Score = 29.7 bits (66), Expect = 1.5
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANH 67
+A + A + + T T TV ++ +H
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPV---PEPEKQTDHTVKGTKHHHH 729
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 75.8 bits (187), Expect = 2e-17
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ PDQ PP++ ++ T + W + NG V Y LE G +
Sbjct: 2 SSGSSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVE--GSMQICYCGP 59
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
++ + L+P+T + R+ A++ G
Sbjct: 60 GLSYEIKGLSPATTYYCRVQALSVVGAGP 88
Score = 71.2 bits (175), Expect = 1e-15
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE---TSDPAQPSITCDTT 91
++ P + + + T V+W P ++G+ + Y LE Q
Sbjct: 5 SSGPDQCKPPQV---TCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGL 61
Query: 92 SYQLTGLSPHTTY 104
SY++ GLSP TTY
Sbjct: 62 SYEIKGLSPATTY 74
Score = 37.3 bits (87), Expect = 0.001
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
G +G + Y G S I+ L P T Y VQ G SE TPP
Sbjct: 46 GGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 35.4 bits (82), Expect = 0.005
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITTPP-GPPGS 43
+A + G PFSE TPP P S
Sbjct: 79 QALSVVGAGPFSEVVACVTPPSSGPSS 105
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 75.9 bits (187), Expect = 3e-17
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVTK-TRTSLALKWNAAVDNG-AHVMHYILESDQGNATGD 268
S FTT P +P P P + K S + W+ DNG A + Y++E +G+
Sbjct: 6 SGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNK 65
Query: 269 FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVP 328
++ I + +L P +R R+ ++ G+SA + S+ V TP V G
Sbjct: 66 WEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL------LVQTPAVSGPSS 119
Query: 329 G 329
G
Sbjct: 120 G 120
Score = 67.1 bits (164), Expect = 4e-14
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 24 GWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETS 79
G S S TT PG P ++ S ++W P N G+ I YV+E +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSV--KGKIHSHSFKITWDPPKDNGGATINKYVVEMA 58
Query: 80 DPAQPSI-----TCDTTSYQLTGLSPHTTYK 105
+ + + + T + L+P Y+
Sbjct: 59 EGSNGNKWEMIYSGATREHLCDRLNPGCFYR 89
Score = 38.6 bits (90), Expect = 4e-04
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 165 SDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPD 224
++ K++ IY+G + L PG Y + V + SE L TP
Sbjct: 58 AEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
Query: 225 QP 226
Sbjct: 118 SS 119
Score = 32.8 bits (75), Expect = 0.049
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
+ G S SE+ ++ TP
Sbjct: 93 YCISDGGQSAVSESLLVQTPAVSG 116
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 81.9 bits (201), Expect = 3e-17
Identities = 69/410 (16%), Positives = 108/410 (26%), Gaps = 102/410 (24%)
Query: 18 RAGNSAGWSPFSETSVITT------PPGPPGSLTLRKTSVT--TPTSLTVSWSEPANHGS 69
A N G F+ S P P +L L ++V ++T+ W P
Sbjct: 241 AAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI 300
Query: 70 PILHYVLE-----TSDPAQPSITC-------DTTSYQLTGLSPHTTYK------------ 105
P+ HY + +S P+ S L L P Y
Sbjct: 301 PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQT 360
Query: 106 -----SVCQVYLISDKHTQKVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGV 160
V + + K L + LP R + + F V
Sbjct: 361 RLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQV 420
Query: 161 --------------------PPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ 200
P + G S +QDL Y V VQ
Sbjct: 421 KVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQ 480
Query: 201 VHLEEIVGIASEPTLFTTPPC--------------------------EPDQPNPPKLVTK 234
+ A FTTPPC +P+ + +V
Sbjct: 481 PIRPKSHSKAEA-VFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQD 539
Query: 235 TRTSLALKWNAAV-DNGAHVMHYIL-------ESDQG---NATGDFKEISKSKNKNFTLS 283
+ W A + + + + ES Q N+ +I S + T+
Sbjct: 540 VNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVP 599
Query: 284 KLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
L PST +R + + G+ + TPE+ S +
Sbjct: 600 NLRPSTLYRLEVQVLTPGGEG-------PATIKTFRTPELPPSSAHRSHL 642
Score = 70.4 bits (171), Expect = 2e-13
Identities = 51/376 (13%), Positives = 91/376 (24%), Gaps = 74/376 (19%)
Query: 4 VCQSCTDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSE 63
+SC + + S G + P + + L V WS
Sbjct: 124 CVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSS 183
Query: 64 PANHGSPILHYVLE------------TSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQV 110
N + YV++ + Q QLT + P Y+ V V
Sbjct: 184 KFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAV 243
Query: 111 YLI--------SDKHTQKVDLTFESDQLYLSGLPNS-EWPSLRTIILT------------ 149
+ S D + L ++ T+ +
Sbjct: 244 NVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVH 303
Query: 150 ---LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ------ 200
+++ S K + +G S ++ L+P DY V +Q
Sbjct: 304 HYKVFWSWM-----VSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWG 358
Query: 201 ----------VHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR-------------T 237
+H ++ L T P + TR
Sbjct: 359 QTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQL 418
Query: 238 SLALKWNAAVD---NGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFR 294
+ + W D N HV + TG + L L+ S ++
Sbjct: 419 QVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVT 478
Query: 295 LAAVNQHGKSADATSV 310
+ + S
Sbjct: 479 VQPIRPKSHSKAEAVF 494
Score = 66.9 bits (162), Expect = 2e-12
Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 18/183 (9%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQ 225
+ ++++ + ++ D++P Y V + P+ +P
Sbjct: 207 SEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSA 266
Query: 226 PNPPKLVT--------KTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKN 277
P P + ++ + W+ + V HY + ++ K +
Sbjct: 267 PPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRR 326
Query: 278 KN-------FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGG 330
K L KL P + L A+ G++ ++ S + +
Sbjct: 327 KTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV---SLHFTSTHATNNKEQL 383
Query: 331 VKV 333
VK
Sbjct: 384 VKT 386
Score = 39.9 bits (92), Expect = 0.001
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ G P + + TP PP S P S +G PI + +L
Sbjct: 612 QVLTPGGEGPATIKT-FRTPELPPSSAHRSHLKHRHPHHYKPSPE---RYGKPIPNPLLG 667
Query: 78 TSD 80
Sbjct: 668 LDS 670
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 77.9 bits (192), Expect = 4e-17
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 18 RAGNSAGWSPFSETSVITTPP-GPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
A N G S S T P P + L S+ V+ + + GSPI HY++
Sbjct: 86 AALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV 145
Query: 77 E-----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ + + + L L + Y+
Sbjct: 146 RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYE 179
Score = 76.4 bits (188), Expect = 2e-16
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP-DQPNPPKLVTKTRTSLAL 241
I LKP T YAV + + +G S + F T P P + + S+ +
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKV 128
Query: 242 KWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQH 301
D G+ + HY++ ++ + S + + L L + + + A NQ
Sbjct: 129 NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ 188
Query: 302 GKSADATSV 310
GKS A V
Sbjct: 189 GKSKAAHFV 197
Score = 60.2 bits (146), Expect = 6e-11
Identities = 32/209 (15%), Positives = 56/209 (26%), Gaps = 33/209 (15%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANH-GSPILHYVLE---------TSDPAQPS 85
P S ++ + + ++ V + EP G PIL Y E S
Sbjct: 4 AQADTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 62
Query: 86 ITCDTTSYQLTGLSPHTTYK-SVC--------QVYLISDKHTQKVDLTFESDQLYLSGLP 136
+ GL P TTY + ++ S+ TQ V G
Sbjct: 63 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGED 122
Query: 137 NSEWPSLRTIILTLYFRTAQVPGVPP-----YVSDKGRDGKYKSIYNGEAQSCRIQDLKP 191
+ + + G P + K + + ++ L
Sbjct: 123 GNS--------IKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDW 174
Query: 192 GTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+Y V V ++ A+ T
Sbjct: 175 NAEYEVYVVAENQQGKSKAAHFVFRTAAA 203
Score = 54.4 bits (131), Expect = 7e-09
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 16/124 (12%)
Query: 222 EPDQPNPPKL--VTKTRTSLALKWNA-AVDNGAHVMHYILE----SDQGNATGDFKEISK 274
+ D P+ P + V ++ ++++ G ++ Y E ++ + +
Sbjct: 5 QADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64
Query: 275 SKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYT--PEVKGSVPGGVK 332
S T+ L P T + RLAA+N G E + S + P + S P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLG-------EISAASEFKTQPVREPSAPKLEG 117
Query: 333 VFAA 336
Sbjct: 118 QMGE 121
Score = 27.9 bits (62), Expect = 4.7
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 18 RAGNSAGWSPFSETSVITTPP 38
A N G S + T
Sbjct: 183 VAENQQGKSKAAHFVFRTAAA 203
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 77.4 bits (191), Expect = 5e-17
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 18 RAGNSAGWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILH 73
A N G +ET+ P PPG +TL T S+++SW +P + GS IL
Sbjct: 80 LAENEYGIGLPAETAESVKASERPLPPGKITL---MDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 74 YVLE----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
Y++E SD T T +TGL Y
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYS 172
Score = 77.0 bits (190), Expect = 7e-17
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 2/144 (1%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ R N S ++ L+ G Y V E +G+ +E
Sbjct: 43 EKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P L+ TR S++L W D G+ ++ YI+E Q + + + K T
Sbjct: 103 PLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEM-QTKGSDKWATCATVKVTEAT 161
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSA 305
++ L + FR++A N+ G S
Sbjct: 162 ITGLIQGEEYSFRVSAQNEKGISD 185
Score = 66.6 bits (163), Expect = 3e-13
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P K+ T+TS+ L W+ +D G+ + +YI+E + + ++
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWK 65
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
+ +L + FR+ A N++G A + + PG + +
Sbjct: 66 VDQLQEGCSYYFRVLAENEYGIGLPAETA------ESVKASERPLPPGKITL 111
Score = 61.6 bits (150), Expect = 2e-11
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPAQP-----SITCD 89
PGPP L + T TS+T++W P + GS I +Y++E + + + C
Sbjct: 4 DTPGPPQDLKV---KEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 90 TTSYQLTGLSPHTTY 104
TS+++ L +Y
Sbjct: 61 KTSWKVDQLQEGCSY 75
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 73.1 bits (180), Expect = 2e-16
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKS 275
++ P P P L T L+L+W+ + + YILE ++ + FK
Sbjct: 2 SSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG 61
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
++ +T+ L ST ++F++ A N GKS
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKS 90
Score = 60.0 bits (146), Expect = 1e-11
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPA-----QPSITCD 89
+ P P S L + T L++ WS+P+ + Y+LE + +P +
Sbjct: 6 SGPSMPASPVL---TKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE 62
Query: 90 TTSYQLTGLSPHTTYK 105
+Y + L T YK
Sbjct: 63 DLAYTVKNLRRSTKYK 78
Score = 31.2 bits (71), Expect = 0.15
Identities = 10/28 (35%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPG 42
A NS G S SE TT G
Sbjct: 82 IAYNSEGKSNPSEVVEFTTCPDSGPSSG 109
Score = 30.8 bits (70), Expect = 0.18
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQ 225
++ +K Y+GE + +++L+ T Y V + E SE FTT PD
Sbjct: 48 EETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT---CPDS 104
Query: 226 PNPP 229
Sbjct: 105 GPSS 108
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 72.9 bits (179), Expect = 4e-16
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 17/99 (17%)
Query: 20 GNSAGWSPFSETSVITT---------PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSP 70
G+S P ++ T P P SL +R TS+ VSW+ P N
Sbjct: 1 GSSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLV----TSIVVSWTPPENQNIV 56
Query: 71 ILHYVLE----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ Y + + + Y + L P + Y
Sbjct: 57 VRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYV 95
Score = 50.5 bits (121), Expect = 4e-08
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPK-----LVTKTRTSLALKWNAAVDNGAHVMHYILESDQ 262
G A++ T + D+ P+ V TS+ + W + V Y +
Sbjct: 7 GPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGI 66
Query: 263 GNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADAT 308
G+ ++ K + +T+ L PS+ + L A N G+
Sbjct: 67 GSPHAQTIKVD-YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY 111
Score = 27.8 bits (62), Expect = 3.0
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWS-PFSETSVITTPPGPPGS 43
+A N+ G P E++V P S
Sbjct: 99 KAFNNVGEGIPLYESAVTRPHTSGPSS 125
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 76.7 bits (188), Expect = 1e-15
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
A N S + + + + TSL+VSWS P S + Y +
Sbjct: 418 EARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVT 477
Query: 78 ----TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQV 110
+ + S L L+P TTY + QV
Sbjct: 478 YRKKGDSNSYNVRRTEGFSVTLDDLAPDTTY--LVQV 512
Score = 69.8 bits (170), Expect = 2e-13
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALK 242
S + DL+P +Y V+ + S + +P +L ++ TSL++
Sbjct: 401 SVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVS 460
Query: 243 WNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
W+ + V Y + + + + + +++ + TL L P T + ++ A+ Q G
Sbjct: 461 WSIPPPQQSRVWKYEVTYRKKGDSNSY-NVRRTEGFSVTLDDLAPDTTYLVQVQALTQEG 519
Score = 62.5 bits (151), Expect = 5e-11
Identities = 40/224 (17%), Positives = 68/224 (30%), Gaps = 51/224 (22%)
Query: 31 TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLE------------ 77
+ T PP P LT +V + + W+ P + G + Y +
Sbjct: 327 SMPCTRPPSAPHYLT----AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECG 382
Query: 78 ----TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVY------LISDK---HTQKVDLT 124
+ ++P TS ++ L PH Y + + S + ++ T
Sbjct: 383 PCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT 442
Query: 125 FESDQLYLSGLPNS---EW---PSLRTIIL--TLYFRTAQVPGVPPYVSDKGRDGKYKSI 176
S W P ++ + + +R D ++
Sbjct: 443 EPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKG-------------DSNSYNV 489
Query: 177 YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
E S + DL P T Y V VQ +E G S+ F T
Sbjct: 490 RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLS 533
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 12/113 (10%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDF 269
+ + P P + L+W G + Y + +Q
Sbjct: 321 APQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGE 380
Query: 270 KEISKSKNK-----------NFTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
++ + + T+S L P + F + A N + S
Sbjct: 381 CGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFR 433
Score = 30.1 bits (67), Expect = 1.1
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPG 42
+A G S+ T P G
Sbjct: 513 QALTQEGQGAGSKVHEFQTLS-PEG 536
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 70.5 bits (173), Expect = 3e-15
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 22 SAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDP 81
S+G S S + P P ++V ++ ++W++P + SP++ Y+LE S+
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVE-RRAINLTWTKPFDGNSPLIRYILEMSEN 60
Query: 82 AQP------SITCDTTSYQLTGLSPHTTYK 105
P S+ TS + GL P +Y+
Sbjct: 61 NAPWTVLLASVDPKATSVTVKGLVPARSYQ 90
Score = 56.2 bits (136), Expect = 3e-10
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 223 PDQPNPPKLV--TKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNATGDFKEISKSKNKN 279
P P P T R ++ L W D + ++ YILE S+ K +
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATS 77
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKS 304
T+ L P+ ++FRL AVN GK
Sbjct: 78 VTVKGLVPARSYQFRLCAVNDVGKG 102
Score = 33.5 bits (77), Expect = 0.023
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
A N G FS+ + ++ P P S
Sbjct: 94 CAVNDVGKGQFSKDTERVSLPESGPSS 120
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 69.7 bits (171), Expect = 4e-15
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 24 GWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE----TS 79
G S S + T G PG K + TS+ +SW+ P + I +Y L
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD--TIANYELVYKDGEH 58
Query: 80 DPAQPSITCDTTSYQLTGLSPHTTYK 105
Q TSY+L GL P++ Y
Sbjct: 59 GEEQRITIEPGTSYRLQGLKPNSLYY 84
Score = 55.8 bits (135), Expect = 4e-10
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
+S T P QP K ++ TS+ L W + + +Y L G G
Sbjct: 3 SGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP-RSDT-IANYELVYKDGE-HG 59
Query: 268 DFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
+ + I+ ++ L L P++ + FRLAA + G A
Sbjct: 60 EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGA 97
Score = 33.5 bits (77), Expect = 0.023
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
G G+ + I S R+Q LKP + Y + + +G ++ T
Sbjct: 55 DGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSG 111
Score = 28.8 bits (65), Expect = 1.00
Identities = 3/24 (12%), Positives = 5/24 (20%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
A + G + T
Sbjct: 88 AARSPQGLGASTAEISARTMQSSG 111
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 69.4 bits (170), Expect = 6e-15
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 217 TTPPCEPDQP-NPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKS 275
+ P P + S L W + YILE D GN G F+E+
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYVG 62
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
K T+ L ++ + R+ A N+ G S
Sbjct: 63 KETMCTVDGLHFNSTYNARVKAFNKTGVSP 92
Score = 65.6 bits (160), Expect = 1e-13
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 32 SVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE----TSDPAQPSIT 87
S ++ P P + + T S T+SW +P P Y+LE +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV 61
Query: 88 CDTTSYQLTGLSPHTTYK 105
T + GL ++TY
Sbjct: 62 GKETMCTVDGLHFNSTYN 79
Score = 35.5 bits (82), Expect = 0.005
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
D G G+++ +Y G+ C + L + Y V+ + V S+ + T
Sbjct: 49 DDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 35.1 bits (81), Expect = 0.006
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
+A N G SP+S+T V+ T G S
Sbjct: 83 KAFNKTGVSPYSKTLVLQTSEGSGPS 108
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 69.3 bits (170), Expect = 7e-15
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 24 GWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL---ETSD 80
G S S PG + +PTS+TV+W P + I +Y L E
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGT 60
Query: 81 PAQPSITCDTTSYQLTGLSPHTTYK 105
+ + + SY + GL +T Y
Sbjct: 61 DKEQDVDVSSHSYTINGLKKYTEYS 85
Score = 50.4 bits (121), Expect = 3e-08
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
+S P + + TS+ + W V + +Y L T
Sbjct: 3 SGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYY-MEKGTD 61
Query: 268 DFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
+++ S + ++T++ L T + FR+ A N+HG
Sbjct: 62 KEQDVDVSSH-SYTINGLKKYTEYSFRVVAYNKHGPGV 98
Score = 27.7 bits (62), Expect = 2.6
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
+ + S I LK T+Y+ V + + G+++ T
Sbjct: 67 DVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTL 108
Score = 26.9 bits (60), Expect = 5.2
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A N G + + T S
Sbjct: 89 VAYNKHGPGVSTPDVAVRTLSDSGPS 114
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 71.7 bits (176), Expect = 9e-15
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 11/99 (11%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL- 76
A + G P+S T P +V + T +SW+EPA I Y +
Sbjct: 76 CAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVC 135
Query: 77 --ETSDPAQPS--------ITCDTTSYQLTGLSPHTTYK 105
+D +P + L Y+
Sbjct: 136 YGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174
Score = 70.6 bits (173), Expect = 3e-14
Identities = 24/142 (16%), Positives = 47/142 (33%), Gaps = 6/142 (4%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQP 226
+G + + + S + +L P DY + V + + G S T P +P
Sbjct: 43 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEP 102
Query: 227 NPPKLVTKTRTSLALKWNAAVDNGAHVMHYIL------ESDQGNATGDFKEISKSKNKNF 280
+ T L W + + Y + + ++ + KN+
Sbjct: 103 GRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 281 TLSKLTPSTCFRFRLAAVNQHG 302
+ L S +R+ + A N G
Sbjct: 163 LIENLRESQPYRYTVKARNGAG 184
Score = 50.5 bits (121), Expect = 2e-07
Identities = 35/241 (14%), Positives = 64/241 (26%), Gaps = 54/241 (22%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-----TSDPAQPSITCDTT 91
G P + + +W P+ + Y ++ S+ +
Sbjct: 5 DLGAPQNPNA---KAAGSRKIHFNWLPPSGK---PMGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 92 SYQLTGLSPHTTYKSVCQVYLISDK-----------HTQK------VDLTFE---SDQLY 131
S +LT L P+ Y+ +V + T + L F S
Sbjct: 59 SVELTNLYPYCDYE--MKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 132 LSGLPNSEW--PSLRTIILT---LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRI 186
LS W P+ +T + + P K + N + + I
Sbjct: 117 LS------WAEPAETNGEITAYEVCYGLVNDDNRPIGPMKK------VLVDNPKNRMLLI 164
Query: 187 QDLKPGTDYAVCVQVHLEEIVGIASEPTL-FTTPPCEPDQP---NPPKLVTKTRTSLALK 242
++L+ Y V+ G E + T P P +V
Sbjct: 165 ENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDS 224
Query: 243 W 243
+
Sbjct: 225 F 225
Score = 39.8 bits (93), Expect = 6e-04
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 9/111 (8%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
P P + W +G M Y ++ + + SK + L
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP--SG-KPMGYRVKYWIQGDSESEAHLLDSKVPSVEL 62
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
+ L P + ++ A G+ ++ V S T + S PG +
Sbjct: 63 TNLYPYCDYEMKVCAYGAQGEGPYSSLV------SCRTHQEVPSEPGRLAF 107
Score = 36.3 bits (84), Expect = 0.009
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 18 RAGNSAGWSPFSETSVITT-----PPGPPGSLTLRKTSVTT--PTSLTVSWSEP 64
+A N AGW P E + P P + + + +S+
Sbjct: 178 KARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 67.4 bits (165), Expect = 4e-14
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 24 GWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD 80
G S S + PP P T+ S + TS+ V+W N G PI + +E
Sbjct: 1 GSSGSSGSQPDHGRLSPPEAPDRPTI---STASETSVYVTWIPRGNGGFPIQSFRVEYKK 57
Query: 81 PAQPS--------ITCDTTSYQLTGLSPHTTYK 105
+ I S ++TGL +YK
Sbjct: 58 LKKVGDWILATSAIPPSRLSVEITGLEKGISYK 90
Score = 65.8 bits (161), Expect = 1e-13
Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 207 VGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNAT 266
+S P+ P+ P + T + TS+ + W + G + + +E +
Sbjct: 2 SSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKV 61
Query: 267 GDFKEISKS---KNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
GD+ + + + ++ L ++FR+ A+N G+S
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGES 102
Score = 28.5 bits (64), Expect = 1.3
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 18 RAGNSAGWSPFSETS--VITTPPGPP 41
RA N G S S S + + GP
Sbjct: 94 RALNMLGESEPSAPSRPYVVSGSGPS 119
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 71.8 bits (176), Expect = 4e-14
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 1/141 (0%)
Query: 165 SDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPD 224
+ + +G + +L+P T Y + V + G S+ +F T P
Sbjct: 235 KEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
Query: 225 QPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLS 283
P + S L D GA ++ YI++ + + E NK+ L
Sbjct: 295 SPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILE 354
Query: 284 KLTPSTCFRFRLAAVNQHGKS 304
L + + ++ A N+ G S
Sbjct: 355 HLQWTMGYEVQITAANRLGYS 375
Score = 68.7 bits (168), Expect = 5e-13
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
A N G +S+ T P P ++ + S +S ++ + G+PIL Y++
Sbjct: 270 AAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSS-GKSFKLSITKQDDGGAPILEYIV 328
Query: 77 ETSDPAQPS------ITCDTTSYQLTGLSPHTTY 104
+ + + + L L Y
Sbjct: 329 KYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGY 362
Score = 58.7 bits (142), Expect = 7e-10
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLETSDPAQP-----SI 86
+ P P + + + T+ VS+++P +HG PI HY ++ + A
Sbjct: 191 ALADVPSSPYGVKI---IELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRS 247
Query: 87 TCDTTSYQLTGLSPHTTY 104
T L L P+TTY
Sbjct: 248 HGVQTMVVLNNLEPNTTY 265
Score = 57.5 bits (139), Expect = 2e-09
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P K++ ++T+ + +N G + HY ++ + + S
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYS-VYTPEVKGSVPGGVKV 333
L+ L P+T + R+AAVN G+ ++ T V+ P +
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQG-------DYSKIEIFQTLPVREPSPPSIHG 301
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 66.6 bits (163), Expect = 5e-14
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 217 TTPPCEPDQPNPPKLVTKTR-TSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISK 274
+ P PP+L + + + L+W VD G+ + Y +E + +E+ +
Sbjct: 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIE-KDEPREVYQ 61
Query: 275 SKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
T+S L P + FRL A N+ G
Sbjct: 62 GSEVECTVSSLLPGKTYSFRLRAANKMGFGP 92
Score = 62.7 bits (153), Expect = 1e-12
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 31 TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLETSDPAQPS---- 85
+S + PPGP L + + W P G SPI Y +E S +
Sbjct: 2 SSGSSGPPGPCLPPRL--QGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV 59
Query: 86 ITCDTTSYQLTGLSPHTTYK 105
++ L P TY
Sbjct: 60 YQGSEVECTVSSLLPGKTYS 79
Score = 36.9 bits (86), Expect = 0.001
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
RA N G+ PFSE ITT PG
Sbjct: 83 RAANKMGFGPFSEKCDITTAPGSG 106
Score = 29.6 bits (67), Expect = 0.47
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQ 225
+ + +Y G C + L PG Y+ ++ + G SE TT P
Sbjct: 49 SPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPS 108
Query: 226 P 226
Sbjct: 109 S 109
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 66.6 bits (163), Expect = 7e-14
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 24 GWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD 80
G S S T P PGPP +L + S P S+T+ + + + I +++E
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNLGI---SNIGPRSVTLQFRPGYDGKTSISRWLVEAQV 57
Query: 81 PA-----------QPSITCDTTSYQLTGLSPHTTYK 105
Q S D S ++ L+P T Y
Sbjct: 58 GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYS 93
Score = 63.5 bits (155), Expect = 9e-13
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
+S PP P P + S+ L++ D + +++E+ G
Sbjct: 3 SGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGE 62
Query: 268 D------FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ ++ ++ + L P TC+ FR+ VN G S
Sbjct: 63 GEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTS 105
Score = 30.4 bits (69), Expect = 0.31
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
R N G SP S+ S I T P S
Sbjct: 97 RQVNIVGTSPPSQPSRKIQTLQSGPSS 123
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 69.4 bits (170), Expect = 1e-13
Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 42/291 (14%)
Query: 37 PPGPP-GSLTLRKTSVTTPTSLTVSWSE--PANHGSPILHYVLETSDPAQPSITCDTTSY 93
P P + + ++ + W P IL Y + + +
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNAT 63
Query: 94 QLTGLSPHTTYK-----------------SVCQVYLISDKHTQKVDLTFESDQLYLSGLP 136
+LT + Y ++ + + + + L++
Sbjct: 64 KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVE--- 120
Query: 137 NSEWPSLRTIILT--LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTD 194
W + R + L + ++ ++ +L
Sbjct: 121 ---WTTPRESVKKYILEWC--------VLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC 169
Query: 195 YAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWN---AAVDNGA 251
Y + V + G + E P + + + L+W+ V NG
Sbjct: 170 YLITVTPVYADGPG-SPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG- 227
Query: 252 HVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
+ +Y + + S +TLS LT T + R+AA G
Sbjct: 228 FIRNYTIFYRTIIGNETAVNVDSSHT-EYTLSSLTSDTLYMVRMAAYTDEG 277
Score = 59.0 bits (143), Expect = 4e-10
Identities = 34/216 (15%), Positives = 59/216 (27%), Gaps = 19/216 (8%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHY-V 75
N G S + I + + L V W+ P + IL + V
Sbjct: 79 TVRNLVGKSDAAVL-TIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCV 137
Query: 76 LETSDPAQPSITC----DTTSYQLTGLSPHTTYK-SVCQVYLISDKHTQKVDLTFESDQL 130
L P +Y L+ Y +V VY + + Q
Sbjct: 138 LSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI--KAYLKQA 195
Query: 131 YLSGLPN--SEWPSLRTIILT-----LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQS 183
S P ++ +L + + + + + + +
Sbjct: 196 PPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVN-VDSSHTE 254
Query: 184 CRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
+ L T Y V + + +E E T FTTP
Sbjct: 255 YTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT-FTTP 289
Score = 57.9 bits (140), Expect = 9e-10
Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 13/152 (8%)
Query: 185 RIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLV--TKTRTSLALK 242
++ Y + V +VG S+ + T P C+ +P + L ++
Sbjct: 64 KLTVNLTNDRYLATLTV--RNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVE 120
Query: 243 WNAAVDN-GAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQH 301
W ++ +++ + + SD+ D+++ + ++ + L S C+ + V
Sbjct: 121 WTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYAD 180
Query: 302 GKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
G + + Y + S V+
Sbjct: 181 GPGSPESIK-------AYLKQAPPSKGPTVRT 205
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 68.3 bits (167), Expect = 1e-13
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 18 RAGNSAGWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILH 73
S +S T+ TT P PP +T+ P ++ V+W P+ I
Sbjct: 82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGK-PKTIIVNWQPPSEANGKITG 140
Query: 74 YVL--------ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
Y++ E D + + ++Q+ L+ T Y
Sbjct: 141 YIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYY 180
Score = 66.0 bits (161), Expect = 7e-13
Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 12/166 (7%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP--- 219
N S + LKP T Y V V S TT
Sbjct: 45 RWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELV 104
Query: 220 PCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE--SDQGNATGDFKEISKSKN 277
P P + ++ + W + + YI+ +D D+ N
Sbjct: 105 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN 164
Query: 278 K-NFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE 322
+ + +LT T + F++ A N G + +V TP+
Sbjct: 165 RLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV------QFRTPK 204
Score = 61.4 bits (149), Expect = 3e-11
Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 47/220 (21%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPA----NHGSPILHYVLE-----TSDPAQPSIT 87
P PP + S+ + ++ ++W++ + + +Y + ++ +
Sbjct: 4 PMMPPVGVQA---SILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 60
Query: 88 CDTTSYQLTGLSPHTTYKSVCQVY---------LISDKHT---------QKVDLTFE--- 126
T SY +TGL P+T Y+ V + + T + V + +
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 127 SDQLYLSGLPNSEWPSLRTIIL--TLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSC 184
+ ++ P I +Y+ T + G +
Sbjct: 121 PKTIIVNWQP---PSEANGKITGYIIYYSTD---------VNAEIHDWVIEPVVGNRLTH 168
Query: 185 RIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPD 224
+IQ+L T Y +Q + +G SE F TP
Sbjct: 169 QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHH 208
Score = 44.0 bits (104), Expect = 2e-05
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 226 PNPPKLVTKTRTSLALKWNA----AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P + + ++ + W +Y + + + + ++
Sbjct: 8 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE-VKGSVPGGVKVFA 335
++ L P+T + F + S + + T E V S P V V +
Sbjct: 68 VTGLKPNTLYEFSVMVTKGRRSSTWSMTA------HGTTFELVPTSPPKDVTVVS 116
Score = 35.2 bits (81), Expect = 0.019
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
+A NS G P SE TP
Sbjct: 184 QARNSKGMGPMSEAVQFRTPKAHHHH 209
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 64.9 bits (158), Expect = 2e-13
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 217 TTPPCEPDQPNPPKL--VTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISK 274
P+PP + + S L D GA ++ YI++ + + E
Sbjct: 2 AEASMRE--PSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 275 SKNKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
NK+ L L + + ++ A N+ G S
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYS 90
Score = 61.8 bits (150), Expect = 3e-12
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 10/82 (12%)
Query: 30 ETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQP----- 84
E P PP ++ S +S ++ + G+PIL Y+++ +
Sbjct: 1 EAEASMREPSPPS----IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLE 56
Query: 85 -SITCDTTSYQLTGLSPHTTYK 105
+ + L L Y+
Sbjct: 57 KKVQGNKDHIILEHLQWTMGYE 78
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 64.2 bits (157), Expect = 3e-13
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL---ETSDPAQPSITCDTT 91
++ PGP +L T+PTS+ ++W PA P+ Y L E S + +I D
Sbjct: 5 SSGPGPVENLQAV---STSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGL 61
Query: 92 SYQLTGLSPHTTYK 105
SY+L GL T Y
Sbjct: 62 SYKLEGLKKFTEYS 75
Score = 43.4 bits (103), Expect = 6e-06
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P + V+ + TS+ + W V Y L + + ++ +
Sbjct: 2 SSGSSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVS--TGKEQNIEVD 59
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHG 302
++ L L T + R A N++G
Sbjct: 60 GLSYKLEGLKKFTEYSLRFLAYNRYG 85
Score = 30.3 bits (69), Expect = 0.30
Identities = 7/58 (12%), Positives = 21/58 (36%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ + + S +++ LK T+Y++ + G++++ T
Sbjct: 42 RLFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
Score = 27.2 bits (61), Expect = 2.9
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A N G ++ + T S
Sbjct: 79 LAYNRYGPGVSTDDITVVTLSDSGPS 104
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 64.4 bits (157), Expect = 4e-13
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 24 GWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL---- 76
G S S ++ T PGP G L+ + TSL VSW EP + Y +
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVGHLSFSEIL---DTSLKVSWQEPGEKNGILTGYRISWEE 57
Query: 77 --ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
T+ + T Y++TGL+ TTY
Sbjct: 58 YNRTNTRVTHYLPNVTLEYRVTGLTALTTYT 88
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
+S P L T P TSL + W + + Y + ++ N T
Sbjct: 3 SGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTN 62
Query: 268 DFKEISKSKNK-NFTLSKLTPSTCFRFRLAAVNQHG 302
+ ++ LT T + +AA+ G
Sbjct: 63 TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKG 98
Score = 30.5 bits (69), Expect = 0.33
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ + + R+ L T Y + V + G S T+ + P
Sbjct: 55 WEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP-- 112
Query: 223 PDQP 226
P P
Sbjct: 113 PSGP 116
Score = 29.7 bits (67), Expect = 0.58
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVIT-TPPGPPGS 43
A S G S +++ + PP P S
Sbjct: 92 AAMTSKGQGQVSASTISSGVPPSGPSS 118
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 64.4 bits (157), Expect = 4e-13
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 20 GNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-- 77
G+S + S + P P + + + + +SW PA I + +
Sbjct: 1 GSSGSSGKPAIPSS-SVLPSAPRDVVP---VLVSSRFVRLSWRPPAEAKGNIQTFTVFFS 56
Query: 78 ----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ A + + + L P Y
Sbjct: 57 REGDNRERALNTTQPGSLQLTVGNLKPEAMYT 88
Score = 56.3 bits (136), Expect = 3e-10
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNAT 266
+S + P P V + + L W + ++ + + S +G+
Sbjct: 3 SGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNR 62
Query: 267 GDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
++ + T+ L P + FR+ A N+ G
Sbjct: 63 ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPG 100
Score = 32.0 bits (73), Expect = 0.089
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A N G S+ + T P S
Sbjct: 92 VAYNEWGPGESSQPIKVATQPESGPS 117
Score = 28.9 bits (65), Expect = 0.87
Identities = 11/64 (17%), Positives = 21/64 (32%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ + + + + + +LKP Y V + E G +S+P T P
Sbjct: 55 FSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPES 114
Query: 223 PDQP 226
Sbjct: 115 GPSS 118
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 65.6 bits (160), Expect = 9e-13
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 7/147 (4%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
V+ ++ + + L+PG DY + V + T T P
Sbjct: 58 VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVP-- 115
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
P + ++ + W + ++++ D E+S S + N
Sbjct: 116 --PPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVV 171
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADAT 308
L+ L P T + +++V + +S
Sbjct: 172 LTNLLPGTEYVVSVSSVYEQHESTPLR 198
Score = 60.2 bits (146), Expect = 7e-11
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ G S + + T PP L + P ++ V+W+ P + + ++++
Sbjct: 95 YTVKNGGESTPTTLTQ-QTAVPPPTDLRF---TNIGPDTMRVTWAPPPS--IDLTNFLVR 148
Query: 78 ------TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
D A+ SI+ + LT L P T Y
Sbjct: 149 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYV 182
Score = 54.8 bits (132), Expect = 4e-09
Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 34/200 (17%)
Query: 20 GNSAGWSPFSETSVI---TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
G+S S V P L+ T +S+ + W+ + S I+ Y +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVPQPTDLSF---VDITDSSIGLRWTPLNS--STIIGYRI 56
Query: 77 E------TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHT-QKVDLTFESD- 128
+ + Y +TGL P Y VY + + LT ++
Sbjct: 57 TVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYD--ISVYTVKNGGESTPTTLTQQTAV 114
Query: 129 ----QLYLSGL-PNS---EWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGE 180
L + + P++ W +I LT + Y K + + +
Sbjct: 115 PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVR--------YSPVKNEEDVAELSISPS 166
Query: 181 AQSCRIQDLKPGTDYAVCVQ 200
+ + +L PGT+Y V V
Sbjct: 167 DNAVVLTNLLPGTEYVVSVS 186
Score = 47.9 bits (114), Expect = 9e-07
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Query: 210 ASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNATGD 268
S + E QP V T +S+ L+W N + ++ Y + G
Sbjct: 10 HSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPI 67
Query: 269 FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAE 312
F++ S +T++ L P + + V G+S T +
Sbjct: 68 FEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQ 111
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 63.2 bits (154), Expect = 1e-12
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 22 SAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSD 80
S+G S S I PGPP + + ++ ++W+ P + + I Y ++ +D
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKI---EDVWGENVALTWTPPKDDGNAAITGYTIQKAD 58
Query: 81 PAQP-----SITCDTTSYQLTGLSPHTTYK 105
TS +T L Y
Sbjct: 59 KKSMEWFTVIEHYHRTSATITELVIGNEYY 88
Score = 57.4 bits (139), Expect = 1e-10
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNG-AHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P P K+ ++AL W D+G A + Y ++ + F I + T
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT 77
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+++L + FR+ + N G S
Sbjct: 78 ITELVIGNEYYFRVFSENMCGLS 100
Score = 26.2 bits (58), Expect = 9.9
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPG 42
+ N G S + + + G
Sbjct: 92 FSENMCGLSEDATMTKESAVIARDG 116
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 63.2 bits (154), Expect = 1e-12
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 24 GWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE--T 78
G S S P P SL +R + +SW+ P N + Y++
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVR----PQTNCIIMSWTPPLNPNIVVRGYIIGYGV 56
Query: 79 SDPAQPSITCD--TTSYQLTGLSPHTTYK 105
P ++ D Y + L + Y
Sbjct: 57 GSPYAETVRVDSKQRYYSIERLESSSHYV 85
Score = 56.3 bits (136), Expect = 3e-10
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
+S P PDQP+ V + + W ++ V YI+ G+
Sbjct: 3 SGSSGPENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYA 61
Query: 268 DFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+ + SK + +++ +L S+ + L A N G+ A
Sbjct: 62 ETVRVD-SKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESA 104
Score = 27.0 bits (60), Expect = 4.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVIT-TPPGPPGS 43
+A N+AG S T + P S
Sbjct: 89 KAFNNAGEGVPLYESATTRSITSGPSS 115
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 62.7 bits (153), Expect = 2e-12
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 18 RAGNSAGWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS--PI 71
+GN G ++ + T P PP +++L V S+ VSW P + I
Sbjct: 5 SSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLE---VVNSRSIKVSWLPPPSGTQNGFI 61
Query: 72 LHYVL----ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
Y + T ++ + Y TGL + Y
Sbjct: 62 TGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYS 99
Score = 32.7 bits (75), Expect = 0.049
Identities = 8/44 (18%), Positives = 11/44 (25%)
Query: 176 IYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
L+ G+ Y+ V G S TP
Sbjct: 79 TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122
Score = 31.5 bits (72), Expect = 0.14
Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGAHVMHYILESD 261
G++++ T P P P+ V+ S+ + W NG + Y +
Sbjct: 13 GVSTDDITVVTLSDVPSAP--PQNVSLEVVNSRSIKVSWLPPPSGTQNG-FITGYKIRHR 69
Query: 262 QGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
+ G+ + + + + + L + + F+++A+ +G
Sbjct: 70 KTTRRGEMETLEPNNL-WYLFTGLEKGSQYSFQVSAMTVNG 109
Score = 28.1 bits (63), Expect = 2.2
Identities = 6/20 (30%), Positives = 6/20 (30%)
Query: 18 RAGNSAGWSPFSETSVITTP 37
A G P S TP
Sbjct: 103 SAMTVNGTGPPSNWYTAETP 122
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 62.0 bits (151), Expect = 2e-12
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-----TSDPAQPSITCD 89
++ PG T+ ++ + + W P +L Y L+ + P D
Sbjct: 2 SSGSSGPGRPTMMISTTA-MNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKD 60
Query: 90 TTSYQLTGLSPHTTYK 105
+ +TGL TTY
Sbjct: 61 DQHFTVTGLHKGTTYI 76
Score = 56.3 bits (136), Expect = 2e-10
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P +P + T + L+W+ + ++ Y L+ + +
Sbjct: 2 SSGSSGPGRP-TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKD 60
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE 322
+++FT++ L T + FRLAA N+ G E + TPE
Sbjct: 61 DQHFTVTGLHKGTTYIFRLAAKNRAGLG-------EEFEKEIRTPE 99
Score = 32.4 bits (74), Expect = 0.053
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 18 RAGNSAGWSPFSETSVITT--PPGPP 41
A N AG E + T GP
Sbjct: 80 AAKNRAGLGEEFEKEIRTPEDLSGPS 105
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 62.4 bits (152), Expect = 2e-12
Identities = 21/98 (21%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 19 AGNSAGWSPFSETSV-ITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY 74
+ G S + T PGPP + TS+ + W PA IL Y
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVPGPPMGILF---PEVRTTSVRLIWQPPAAPNGIILAY 61
Query: 75 VL-------ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ + + Y TGL P + Y
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYL 99
Score = 47.0 bits (112), Expect = 7e-07
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE--SDQGNATGD 268
P L T P P TS+ L W ++ Y + + A
Sbjct: 16 HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTA 75
Query: 269 FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
E+ + +T + L P + + FR+ A + G
Sbjct: 76 TVEVLAPSARQYTATGLKPESVYLFRITAQTRKG 109
Score = 30.4 bits (69), Expect = 0.32
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 18 RAGNSAGWSPFSETSVITT--PPGPP 41
A GW +E V+TT GP
Sbjct: 103 TAQTRKGWGEAAEALVVTTEKRSGPS 128
Score = 30.1 bits (68), Expect = 0.51
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
++ + + A+ LKP + Y + + G A+E + TT +
Sbjct: 66 RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTE--K 123
Query: 223 PDQP 226
P
Sbjct: 124 RSGP 127
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 62.0 bits (151), Expect = 2e-12
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATG 267
G + P P+ P++ T+ S+ L W YI+E+ + +
Sbjct: 1 GSSGSSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSN 60
Query: 268 DFKEISKS-KNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
++ ++ K +T+ L P+T + F + A+N G S
Sbjct: 61 SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLS 98
Score = 61.6 bits (150), Expect = 4e-12
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQP------SI 86
++ PGPP + + T S+T+SW P Y++E + +
Sbjct: 11 DLSDLPGPPSKPQV---TDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVAN 67
Query: 87 TCDTTSYQLTGLSPHTTYK 105
TT Y + GL P+T Y
Sbjct: 68 HVKTTLYTVRGLRPNTIYL 86
Score = 27.3 bits (61), Expect = 3.2
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
RA N G S S S + T P S
Sbjct: 90 RAINPQGLSDPSPMSDPVRTQDSGPSS 116
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 61.6 bits (150), Expect = 3e-12
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P P + T TS+ L W++ N V +Y ++ G F+E+
Sbjct: 2 SSGSSGPKPPIDLVVTETTATSVTLTWDS--GNSEPVTYYGIQYRAAGTEGPFQEVDGVA 59
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+++ L+P + + FR+ AVN G+
Sbjct: 60 TTRYSIGGLSPFSEYAFRVLAVNSIGRG 87
Score = 60.0 bits (146), Expect = 1e-11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPA-----QPSITCD 89
++ P PP L + + TT TS+T++W + P+ +Y ++ Q
Sbjct: 5 SSGPKPPIDLVV---TETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVA 59
Query: 90 TTSYQLTGLSPHTTYK 105
TT Y + GLSP + Y
Sbjct: 60 TTRYSIGGLSPFSEYA 75
Score = 33.0 bits (76), Expect = 0.029
Identities = 10/27 (37%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
A NS G P SE T P S
Sbjct: 79 LAVNSIGRGPPSEAVRARTGEQSGPSS 105
Score = 27.3 bits (61), Expect = 3.4
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGI--ASEPT-LFTTPPCE 222
G +G ++ + I L P ++YA V +G SE T
Sbjct: 45 AAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLA--VNSIGRGPPSEAVRARTGEQSG 102
Query: 223 PDQ 225
P
Sbjct: 103 PSS 105
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 61.9 bits (150), Expect = 3e-12
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGA-----HVMHYILESDQGNA 265
S P +P+PP + T S+ L W+ + + +E +
Sbjct: 6 SGMEPHKVVP--LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK- 62
Query: 266 TGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
+ I + L P T ++FRL + G+
Sbjct: 63 MHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE 102
Score = 51.5 bits (123), Expect = 1e-08
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 20 GNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-----SPILHY 74
G+S V + P PP V T S+ + W L +
Sbjct: 1 GSSGSSGMEPHKVVPLSKPHPP-----VVGKV-THHSIELYWDLEQKEKRQGPQEQWLRF 54
Query: 75 VLETSDPA----QPSITCDTTSYQLTGLSPHTTYK 105
+E DP T T + + GL P T YK
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYK 89
Score = 30.7 bits (69), Expect = 0.26
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEP-TLFTTPPCEP 223
+ + Y IY G A ++ L+P T Y ++V S ++ TT P
Sbjct: 59 EDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
Score = 30.7 bits (69), Expect = 0.27
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPPGS 43
+ + +G +S V TT P S
Sbjct: 93 KVTSPSGEYEYSPVVSVATTRESGPSS 119
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 63.7 bits (155), Expect = 5e-12
Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 19/103 (18%)
Query: 18 RAGNSAGWSPFSETSVITT--------PPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHG 68
A S + S TS P P L + T++ + WS +
Sbjct: 88 LAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLE---IEEYSETAVVLHWSLASDADE 144
Query: 69 SPILHYVLETSDPAQPS-------ITCDTTSYQLTGLSPHTTY 104
I Y + S+++ L T Y
Sbjct: 145 HLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMY 187
Score = 62.9 bits (153), Expect = 9e-12
Identities = 37/235 (15%), Positives = 60/235 (25%), Gaps = 80/235 (34%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------------------TS 79
PP + + + S+ + W P N G PI+ + ++
Sbjct: 2 TYPPTPPNV---TRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 58
Query: 80 DPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVYLISDKHTQKVDLTFESDQLYLSGLPNS 138
P S + + +T L P TY+ + VY +D +
Sbjct: 59 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNND----------------------N 96
Query: 139 EWPSLRTIILTLYFRTAQVPGVPP---------------------------------YVS 165
+ S + L A P P Y
Sbjct: 97 K-ESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYR 155
Query: 166 DKGRDGKYKS--IYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
G+Y I A+S +I L+ T Y +Q S T
Sbjct: 156 PSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 59.8 bits (145), Expect = 9e-11
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 8/142 (5%)
Query: 177 YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPT--LFTTPPCEPDQPNPPKLVT- 233
G++ + + DLKP Y + S + + P D P+L+
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEI 124
Query: 234 --KTRTSLALKWNAAV-DNGAHVMHYILESDQGNATGDFK--EISKSKNKNFTLSKLTPS 288
+ T++ L W+ A + + Y ++ G++ I + ++F ++ L +
Sbjct: 125 EEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETA 184
Query: 289 TCFRFRLAAVNQHGKSADATSV 310
T + F+L + + S +
Sbjct: 185 TMYEFKLQSFSAASASEFSALK 206
Score = 54.4 bits (131), Expect = 7e-09
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 14/123 (11%)
Query: 226 PNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-------------SDQGNATGDFKEI 272
P PP + + S+ L+W ++G ++ + ++ +D
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 64
Query: 273 SKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVK 332
K+ +++ L P +RFR+ AV + + ++ + VP ++
Sbjct: 65 ELGKSFTASVTDLKPQHTYRFRILAVYSNNDN-KESNTSAKFYLQPGAALDPMPVPELLE 123
Query: 333 VFA 335
+
Sbjct: 124 IEE 126
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 60.5 bits (147), Expect = 6e-12
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITC 88
++ P L + TPTSL +SW + + +Y + S + ++
Sbjct: 5 SSVSSVPTKLEV---VDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPG 61
Query: 89 DTTSYQLTGLSPHTTYK 105
++ ++GL P Y
Sbjct: 62 YYSTATISGLKPGVDYT 78
Score = 46.7 bits (111), Expect = 5e-07
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
P ++V T TSL + W+A + +V +Y + + +E + + T
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTAT 67
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+S L P + + A + + S
Sbjct: 68 ISGLKPGVDYTITVYAYDTFFPGYEPNSPI 97
Score = 27.8 bits (62), Expect = 2.2
Identities = 12/56 (21%), Positives = 17/56 (30%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
Y G + G + I LKPG DY + V + G +
Sbjct: 45 YGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 6e-12
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNAT 266
+S PD P TSL + W + Y +E
Sbjct: 3 SGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGE 61
Query: 267 GDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSV 310
I + + L P+ + FR+ A +Q G + V
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
Score = 60.9 bits (148), Expect = 7e-12
Identities = 24/91 (26%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 24 GWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD 80
G S S + P P L S PTSL VSW EP P+ Y +E
Sbjct: 1 GSSGSSGSHDSRLTAGVPDTPTRLVF---SALGPTSLRVSWQEPRCER-PLQGYSVEYQL 56
Query: 81 PAQPS------ITCDTTSYQLTGLSPHTTYK 105
TS + L P+ +Y
Sbjct: 57 LNGGELHRLNIPNPAQTSVVVEDLLPNHSYV 87
Score = 30.8 bits (70), Expect = 0.23
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSV-ITTPPGPPGS 43
RA + GW E + I + P S
Sbjct: 91 RAQSQEGWGREREGVITIESQVSGPSS 117
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 60.4 bits (147), Expect = 9e-12
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPAQPS------IT 87
++P PPG T ++T+ W++P G I Y++E D
Sbjct: 8 SSPIDPPGKPVP---LNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSN 64
Query: 88 CDTTSYQLTGLSPHTTYK 105
+ ++GL+ Y+
Sbjct: 65 ILENEFTVSGLTEDAAYE 82
Score = 54.7 bits (132), Expect = 1e-09
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILE-SDQGNATGDFKEISKSKNKNF 280
D P P + TR ++ LKW G + YI+E D N S F
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKS 304
T+S LT + FR+ A N G
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAI 94
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 59.3 bits (144), Expect = 2e-11
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 32 SVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL-----ETSDPAQPSI 86
S ++ P + + + TS+++ W EP IL Y + + + ++
Sbjct: 2 SSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTL 61
Query: 87 TCDTTSYQLTGLSPHTTY 104
TT ++GL P T Y
Sbjct: 62 KAVTTRATVSGLKPGTRY 79
Score = 44.3 bits (105), Expect = 4e-06
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKS 275
++ P Q + +TS++L W NG ++ Y ++ + + K+
Sbjct: 5 SSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTLKA 63
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHG 302
T+S L P T + F++ A G
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAG 90
Score = 34.6 bits (80), Expect = 0.010
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+K ++ + S + LKPGT Y V+ G S+ T
Sbjct: 47 KYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK-- 104
Query: 223 PDQP 226
P P
Sbjct: 105 PSGP 108
Score = 30.4 bits (69), Expect = 0.26
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITT-PPGPPGS 43
RA SAG FS+ + T P P S
Sbjct: 84 RARTSAGCGRFSQAMEVETGKPSGPSS 110
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 61.7 bits (150), Expect = 2e-11
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 18 RAGNSAGWSPFSETS-VITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEP--ANHGSP 70
A N G SP S S TT P P ++ + T P +L +SW+ H +P
Sbjct: 80 IAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQ---GTEPNNLVISWTPMPEIEHNAP 136
Query: 71 ILHYVLE--TSDPAQPSITC-----DTTSYQLTGLSPHTTY 104
HY + PA + + Y
Sbjct: 137 NFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKY 177
Score = 60.9 bits (148), Expect = 3e-11
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQP-------S 85
++ P P + + + W + ++ SPILHY ++ + P
Sbjct: 1 IVQDVPNAPKLTGITCQA----DKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYE 56
Query: 86 ITCDTTSYQLTGLSPHTTYK 105
+T S + +SP Y
Sbjct: 57 KVPNTDSSFVVQMSPWANYT 76
Score = 59.3 bits (144), Expect = 1e-10
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 224 DQPNPPKL--VTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISK--SKNKN 279
D PN PKL +T + W DN + ++HY ++ + + + +
Sbjct: 4 DVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKSA 305
+ +++P + FR+ A N+ G S
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASP 89
Score = 57.0 bits (138), Expect = 8e-10
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 6/129 (4%)
Query: 182 QSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTL-FTTPPCEPDQ-PNPPKLVTKTRTSL 239
S + + P +Y V + S + TT P P + P+ +L
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNL 121
Query: 240 ALKWNA--AVDNGAHVMHYILE--SDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRL 295
+ W +++ A HY + D A + I + N ++ + ++
Sbjct: 122 VISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKV 181
Query: 296 AAVNQHGKS 304
A+N G+S
Sbjct: 182 VAINDRGES 190
Score = 29.3 bits (66), Expect = 1.4
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 165 SDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ 200
+ +I++ + I D Y + V
Sbjct: 147 DIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVV 182
Score = 26.6 bits (59), Expect = 9.7
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 18 RAGNSAGWSPFSETSVITT 36
A N G S + V+
Sbjct: 182 VAINDRGESNVAAEEVVGY 200
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 59.0 bits (143), Expect = 2e-11
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-----TSDPAQPSITCD 89
++ P ++ + T S+T+SW +P IL Y + ++
Sbjct: 2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQ 61
Query: 90 TTSYQLTGLSPHTTY 104
T + ++ GL P Y
Sbjct: 62 TNTARIDGLRPGMVY 76
Score = 45.1 bits (107), Expect = 2e-06
Identities = 12/86 (13%), Positives = 28/86 (32%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P V+ T S+ L W ++ Y + + +++S+
Sbjct: 2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQ 61
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHG 302
+ L P + ++ A G
Sbjct: 62 TNTARIDGLRPGMVYVVQVRARTVAG 87
Score = 33.2 bits (76), Expect = 0.032
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ + RI L+PG Y V V+ G S F T
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
Score = 31.7 bits (72), Expect = 0.087
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSE-TSVITTPPGPPGS 43
RA AG+ FS T P S
Sbjct: 81 RARTVAGYGKFSGKMCFQTLTDSGPSS 107
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 59.2 bits (143), Expect = 3e-11
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-------------SDQGNATGDF 269
P PP + + S+ L+W ++G ++ + ++ +D
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 270 KEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
K+ +++ L P +RFR+ AV + +
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDN 97
Score = 57.2 bits (138), Expect = 1e-10
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------------------T 78
PP + + + S+ + W P N G PI+ + ++
Sbjct: 2 STYPPTPPNV---TRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 79 SDPAQPSITCDTTSYQLTGLSPHTTY 104
P S + + +T L P TY
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTY 84
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 58.4 bits (141), Expect = 4e-11
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 218 TPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGD-FKEISKSK 276
+ P + +T + L W+ + Y+LE QG+ +
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGT 61
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ L + FRL A S
Sbjct: 62 ETELLVPGLIKDVLYEFRLVAFAGSFVS 89
Score = 54.9 bits (132), Expect = 6e-10
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCD------T 90
PP L +T + + W P + YVLE +Q D
Sbjct: 7 GLSPPRGLVAVRTP----RGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE 62
Query: 91 TSYQLTGLSPHTTYK 105
T + GL Y+
Sbjct: 63 TELLVPGLIKDVLYE 77
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 58.6 bits (142), Expect = 4e-11
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLE---------TSDPAQP 84
++ P S ++ + + ++ V + EP G PIL Y E S
Sbjct: 2 SSGSSGPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 60
Query: 85 SITCDTTSYQLTGLSPHTTYK 105
+ GL P TTY
Sbjct: 61 KEASMEGIVTIVGLKPETTYA 81
Score = 55.2 bits (133), Expect = 7e-10
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILE----SDQGNATGDFKE 271
++ P P+ + V ++ ++++ G ++ Y E ++ + +
Sbjct: 2 SSGSSGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 60
Query: 272 ISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
S T+ L P T + RLAA+N G
Sbjct: 61 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGE 94
Score = 33.2 bits (76), Expect = 0.039
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 10/43 (23%)
Query: 18 RAGNSAGWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTS 56
A N G S S T P P K + P+S
Sbjct: 85 AALNGKGLGEISAASEFKTQPVREPSAP------KLEGSGPSS 121
Score = 29.7 bits (67), Expect = 0.48
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 177 YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR 236
I LKP T YAV + + +G S + F T P P+ PKL
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE--PSAPKLEGSGP 119
Query: 237 TS 238
+S
Sbjct: 120 SS 121
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 57.8 bits (140), Expect = 6e-11
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL-----ETSDPAQPSITCD 89
++ PP L S + + V W P+ + E Q +
Sbjct: 5 SSGLAPPRHLGF---SDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQTEAPGN 58
Query: 90 TTSYQLTGLSPHTTY 104
TS L LS TTY
Sbjct: 59 ATSAMLGPLSSSTTY 73
Score = 33.5 bits (77), Expect = 0.020
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
+ P P + + + W A V + + +
Sbjct: 4 GSSGLAP--PRHLGFSDVSHDAARVFWEGAPRP---VRLVRVTYVSSEGGHSGQTEAPGN 58
Query: 277 NKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+ L L+ ST + R+ + G S+ T
Sbjct: 59 ATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 31.6 bits (72), Expect = 0.094
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
YVS +G G A S + L T Y V V + T
Sbjct: 42 YVSSEGGHSGQTEA-PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPS 100
Query: 223 P 223
P
Sbjct: 101 P 101
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 57.8 bits (140), Expect = 8e-11
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 31 TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-TSDPAQP----- 84
+S + P P LT+ P ++ VSW P I Y+L T D P
Sbjct: 2 SSGSSGPTSAPKDLTVITREGK-PRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWI 60
Query: 85 --SITCDTTSYQLTGLSPHTTY 104
+I+ D ++Q+ L+ T Y
Sbjct: 61 METISGDRLTHQIMDLNLDTMY 82
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 217 TTPPCEPDQPNPPKLVT-----KTRTSLALKWNAAVDNGAHVMHYILE---SDQGNATGD 268
++ P + PK +T ++ + W ++ + YIL
Sbjct: 2 SSGSSGP--TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDW 59
Query: 269 FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
E + L T + FR+ A N G
Sbjct: 60 IMETISGDRLTHQIMDLNLDTMYYFRIQARNSKG 93
Score = 35.8 bits (83), Expect = 0.004
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 165 SDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ D +G+ + +I DL T Y +Q + VG S+P LF T
Sbjct: 52 KNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 30.8 bits (70), Expect = 0.18
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
+A NS G P S+ + T
Sbjct: 87 QARNSKGVGPLSDPILFRTLKVSG 110
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 58.1 bits (141), Expect = 9e-11
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE--SDQGNATGDFKEISKSKNKNF 280
P+ P +L + S+ L W DN + + +I+E + S +
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKS 304
L+P + FR+ AVN GKS
Sbjct: 77 AQLNLSPYVNYSFRVMAVNSIGKS 100
Score = 57.4 bits (139), Expect = 1e-10
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 23 AGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDP- 81
+ S + + P PP L L + S+ +SW+ ++ SPI +++E D
Sbjct: 2 SSGSSGPTPAPVYDVPNPPFDLEL---TDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAM 58
Query: 82 ------AQPSITCDTTSYQLTGLSPHTTYK 105
+ T + LSP+ Y
Sbjct: 59 HKPGLWHHQTEVSGTQTTAQLNLSPYVNYS 88
Score = 28.9 bits (65), Expect = 1.0
Identities = 10/25 (40%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPP 41
A NS G S SE S T P
Sbjct: 92 MAVNSIGKSLPSEASEQYLTKASEP 116
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 57.1 bits (138), Expect = 1e-10
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-TSDPAQP--SITCDTTS 92
+ P P +L L + W+ P + I Y++E + ++ S +
Sbjct: 6 SGPDAPRNLQLSLPR-EAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNF 64
Query: 93 YQLTGLSPHTTY 104
++ L +T Y
Sbjct: 65 TEIKNLLVNTLY 76
Score = 41.3 bits (97), Expect = 4e-05
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 217 TTPPCEPDQPNPPKLVTK--TRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISK 274
++ PD P +L + W + + YI+E + +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSG--SKMWASQR 59
Query: 275 SKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ + + L +T + R+AAV G
Sbjct: 60 AASNFTEIKNLLVNTLYTVRVAAVTSRGIG 89
Score = 30.9 bits (70), Expect = 0.16
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 175 SIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ + I++L T Y V V +G S+ TT
Sbjct: 56 ASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG 104
Score = 30.5 bits (69), Expect = 0.26
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A S G +S++ ITT G S
Sbjct: 81 AAVTSRGIGNWSDSKSITTIKGSGPS 106
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 57.0 bits (138), Expect = 1e-10
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLE---------TSDPAQPS 85
P P + S ++ V + EP G PIL Y E S
Sbjct: 5 DTPSSPSIDQVEPYS----STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60
Query: 86 ITCDTTSYQLTGLSPHTTYK 105
+ GL P TTY
Sbjct: 61 EASMEGIVTIVGLKPETTYA 80
Score = 49.3 bits (118), Expect = 5e-08
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 222 EPDQPNPPKL--VTKTRTSLALKWNA-AVDNGAHVMHYILE----SDQGNATGDFKEISK 274
D P+ P + V ++ ++++ G ++ Y E ++ + +
Sbjct: 3 HMDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 62
Query: 275 SKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
S T+ L P T + RLAA+N G
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLG 92
Score = 30.8 bits (70), Expect = 0.20
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 18 RAGNSAGWSPFSETSVITTPP 38
A N G S S T P
Sbjct: 84 AALNGKGLGEISAASEFKTQP 104
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 57.0 bits (138), Expect = 1e-10
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 13/91 (14%)
Query: 24 GWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLE-T 78
G S S T P P + S+ + + ++W PA+ L Y + T
Sbjct: 1 GSSGSSGEHAPATTGPLPSAPRDVVA---SLVSTRFIKLTWRTPASDPHGDNLTYSVFYT 57
Query: 79 SDPAQPSITC-----DTTSYQLTGLSPHTTY 104
+ + L P T Y
Sbjct: 58 KEGIARERVENTSHPGEMQVTIQNLMPATVY 88
Score = 48.6 bits (116), Expect = 1e-07
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 210 ASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILE-SDQGNATG 267
+S T P P + + L W A D + Y + + +G A
Sbjct: 5 SSGEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARE 64
Query: 268 DFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSV 327
+ S T+ L P+T + FR+ A N+HG + + V T G
Sbjct: 65 RVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL------RVETQPESGPS 118
Query: 328 PG 329
G
Sbjct: 119 SG 120
Score = 32.8 bits (75), Expect = 0.047
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A N G S + T P S
Sbjct: 93 MAQNKHGSGESSAPLRVETQPESGPS 118
Score = 29.3 bits (66), Expect = 0.70
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
Y + + ++ + IQ+L P T Y V + G +S P T P
Sbjct: 56 YTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPES 115
Query: 223 PDQP 226
Sbjct: 116 GPSS 119
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 57.0 bits (138), Expect = 1e-10
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPAQPS------IT 87
++ PP LT+ T T++T+ W P + + YVLE
Sbjct: 5 SSGTSPPTLLTV---DSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDL 61
Query: 88 CDTTSYQLTGLSPHTTYK 105
D T + +TGL
Sbjct: 62 IDKTKFTITGLPTDAKIF 79
Score = 54.7 bits (132), Expect = 8e-10
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILE-SDQGNATGDFKEISK 274
++ P + + T T++ ++W A + Y+LE +G
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDL 61
Query: 275 SKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
FT++ L R+ AVN G S
Sbjct: 62 IDKTKFTITGLPTDAKIFVRVKAVNAAGAS 91
Score = 28.9 bits (65), Expect = 0.81
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 18 RAGNSAGWSPFSETS--VITTPPGPP 41
+A N+AG S S ++ GP
Sbjct: 83 KAVNAAGASEPKYYSQPILVKESGPS 108
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 56.3 bits (136), Expect = 2e-10
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITC 88
++ P L + TPTSL +SW + S + +Y + S + ++
Sbjct: 2 SSVSSVPTKLEV---VAATPTSLLISW-DAPMSSSSVYYYRITYGETGGNSPVQEFTVPY 57
Query: 89 DTTSYQLTGLSPHTTYK 105
+++ ++GLSP Y
Sbjct: 58 SSSTATISGLSPGVDYT 74
Score = 48.6 bits (116), Expect = 1e-07
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
P ++V T TSL + W+A + + + V +Y + + +E + + + T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSS-VYYYRITYGETGGNSPVQEFTVPYSSSTAT 63
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATS 309
+S L+P + + A +
Sbjct: 64 ISGLSPGVDYTITVYAWGEDSAGYMFMY 91
Score = 27.0 bits (60), Expect = 3.0
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 163 YVSDKGRDGKYKSIY-NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPT 214
+ G + + + + I L PG DY + V E+ G +
Sbjct: 40 TYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 59.9 bits (144), Expect = 2e-10
Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 24/275 (8%)
Query: 55 TSLTVSWSEPANHGSPI---LHYVLETSDPAQPSITCD---TTSYQLTGLSPHTTYKSVC 108
+ + W+ + Y D C +T + L + +
Sbjct: 17 DNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 76
Query: 109 QVYLISDKHTQKVDL-TFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPP----- 162
++ + + ++ +F + G P + I+ + +
Sbjct: 77 RIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136
Query: 163 ---YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI--VGIASEPTLFT 217
+ + +I L P T Y + V+ L +G+ S
Sbjct: 137 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 196
Query: 218 TPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYI---LESDQGNATGDFKEISK 274
T P V+ + LKW+ N + ++ L+ + GN +K+I
Sbjct: 197 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD 256
Query: 275 SKNKNFT----LSKLTPSTCFRFRLAAVNQHGKSA 305
+N T + + R+ A + + S
Sbjct: 257 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 291
Score = 42.2 bits (98), Expect = 1e-04
Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 21/222 (9%)
Query: 19 AGNSAGWSPFSETSVITTPPGPPGSLTLRKT------SVTTPTSLTVSWSEPANHGSPIL 72
N++ W + P + L ++ T +V W+ + L
Sbjct: 82 KENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSL 141
Query: 73 HYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLYL 132
+ S + I + +++ LSP TTY + L++
Sbjct: 142 VI-WKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVE 200
Query: 133 SGLPNSEWPSLRTIILTLYFRTAQVPGVPPYV----------SDKGRDGKYKSIY---NG 179
+ LP E + + + + K+K I N
Sbjct: 201 NELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENV 260
Query: 180 EAQSCRI-QDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ C Q++ Y + VQ SE F T
Sbjct: 261 KTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI 302
Score = 30.3 bits (67), Expect = 0.79
Identities = 8/108 (7%), Positives = 22/108 (20%), Gaps = 12/108 (11%)
Query: 9 TDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG 68
T + + + S +S I T + + W +
Sbjct: 170 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANM 229
Query: 69 SPILHYVL--------ETSDPAQPSITCDTTSYQ----LTGLSPHTTY 104
+ + ++ + C+ + Y
Sbjct: 230 TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 277
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 56.6 bits (137), Expect = 3e-10
Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 24 GWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY-VLET 78
G S S + T P P + R + + T++ V W EP I Y V T
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQAR---MLSSTTILVQWKEPEEPNGQIQGYRVYYT 57
Query: 79 SDPAQPS------ITCDTTSYQLTGLSPHTTYK 105
DP Q D+ + L P TY
Sbjct: 58 MDPTQHVNNWMKHNVADSQITTIGNLVPQKTYS 90
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNAAVDNGAHVMHYIL--ESDQ 262
+S P L T P P+ V + T++ ++W + + Y + D
Sbjct: 3 SGSSGPVLTQTSEQAPSSA--PRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDP 60
Query: 263 GNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
++ + + + ++ T+ L P + ++ A G
Sbjct: 61 TQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIG 100
Score = 33.5 bits (77), Expect = 0.028
Identities = 10/58 (17%), Positives = 15/58 (25%)
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ ++Q I +L P Y+V V G S T
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
Score = 31.6 bits (72), Expect = 0.11
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A S G P S + T G S
Sbjct: 94 LAFTSIGDGPLSSDIQVITQTGSGPS 119
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 59.8 bits (145), Expect = 3e-10
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
PD P K+ +R S+ L W A D G+ + +YI+E + + +++ +T
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK-CATTAERWLRVGQARETRYT 257
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPG 329
+ L T ++FR+ A N+ G S + +E T E K
Sbjct: 258 VINLFGKTSYQFRVIAENKFGLS-KPSEPSE----PTITKEDKTRAMN 300
Score = 58.2 bits (141), Expect = 7e-10
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLE----TSDPAQPSIT 87
+ P PP + + S + S+ ++W+EPA + GS I +Y++E T++
Sbjct: 194 DVADVPDPPRGVKV---SDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ 250
Query: 88 CDTTSYQLTGLSPHTTYK 105
T Y + L T+Y+
Sbjct: 251 ARETRYTVINLFGKTSYQ 268
Score = 27.0 bits (60), Expect = 10.0
Identities = 8/25 (32%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 18 RAGNSAGWSPFSETS-VITTPPGPP 41
A N G S SE S T
Sbjct: 272 IAENKFGLSKPSEPSEPTITKEDKT 296
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 56.2 bits (136), Expect = 3e-10
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPAQP------SITCD 89
P P LT+ T T+ T+ W P I Y++E +
Sbjct: 8 PTSAPQHLTV---EDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVE 64
Query: 90 TTSYQLTGLSPHTTYK 105
+ + L
Sbjct: 65 RCGFTVKDLPTGARIL 80
Score = 49.3 bits (118), Expect = 7e-08
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKS--KNKN 279
P + T T+ LKW + Y++E + ++ +K +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEY-CLEGSEEWVPANKEPVERCG 67
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKSA 305
FT+ L FR+ VN G+S
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSE 93
Score = 28.1 bits (63), Expect = 1.5
Identities = 7/26 (26%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 18 RAGNSAGWSPFSETS--VITTPPGPP 41
N AG S + V GP
Sbjct: 84 VGVNIAGRSEPATLLQPVTIRESGPS 109
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 55.6 bits (134), Expect = 4e-10
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 35 TTPPGPPGS-LTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSIT 87
++ P + +R T + P+SL+++W+ P +L Y ++ + +
Sbjct: 2 SSGSSGPPAVSDIRVTRSS-PSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLK 60
Query: 88 CDTTSYQLTGLSPHTTYK 105
+L GL +Y
Sbjct: 61 TSENRAELRGLKRGASYL 78
Score = 45.2 bits (107), Expect = 2e-06
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKE-ISKS 275
++ P + ++ + +SL+L W V+ Y ++ + A G K+
Sbjct: 2 SSGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHG 302
L L + ++ A ++ G
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAG 88
Score = 34.0 bits (78), Expect = 0.014
Identities = 10/58 (17%), Positives = 14/58 (24%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
Y ++ LK G Y V V+ E G + T
Sbjct: 45 YHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQL 102
Score = 31.3 bits (71), Expect = 0.11
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITTPP-GPPGS 43
RA + AG+ PF + T P S
Sbjct: 82 RARSEAGYGPFGQEHHSQTQLDSGPSS 108
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 57.5 bits (139), Expect = 4e-10
Identities = 38/203 (18%), Positives = 62/203 (30%), Gaps = 40/203 (19%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE----TSDPAQPSITCDT 90
T P L + S T T+L++ W P + Y L + + I D+
Sbjct: 4 GTDLDNPKDLEV---SDPTETTLSLRWRRPV---AKFDRYRLTYVSPSGKKNEMEIPVDS 57
Query: 91 TSYQLTGLSPHTTYK-SVCQVY-----LISDKHTQKV-----DLTFE---SDQLYLSGLP 136
TS+ L GL T Y S+ + V ++F + +S
Sbjct: 58 TSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVS--- 114
Query: 137 NSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYA 196
W R+ + + YV G ++ +G ++ L PG DY
Sbjct: 115 ---WTPPRSRVDSYRVS---------YVPITGGTPNVVTV-DGSKTRTKLVKLVPGVDYN 161
Query: 197 VCVQVHLEEIVGIASEPTLFTTP 219
V + L T
Sbjct: 162 VNIISVKGFEESEPISGILKTAL 184
Score = 54.8 bits (132), Expect = 4e-09
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
A S + +T G P ++ S T S TVSW+ P S + Y +
Sbjct: 76 VAEKGRHKSKPTTIKG-STVVGSPKGISF---SDITENSATVSWTPPR---SRVDSYRVS 128
Query: 78 -----TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
P ++ T +L L P Y
Sbjct: 129 YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYN 161
Score = 53.2 bits (128), Expect = 1e-08
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 7/129 (5%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALK 242
S ++ L GT+Y + + E S+PT P T S +
Sbjct: 59 SFILRGLDAGTEYTISLVA---EKGRHKSKPTTIKGST-VVGSPKGISFSDITENSATVS 114
Query: 243 WNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
W V Y + L KL P + + +V
Sbjct: 115 WTPPRSR---VDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE 171
Query: 303 KSADATSVA 311
+S + +
Sbjct: 172 ESEPISGIL 180
Score = 40.1 bits (94), Expect = 3e-04
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 222 EPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
+ D P ++ T T+L+L+W V Y L + + EI +F
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVAK---FDRYRLTYVSPSGKKNEMEIPVDST-SFI 61
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADAT 308
L L T + L A KS T
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTT 88
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 54.8 bits (132), Expect = 7e-10
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 34 ITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSIT 87
++ PP +L L + TP SL VSW+ P +LHY L S+
Sbjct: 4 GSSGRSPPSNLAL---ASETPDSLQVSWTPPL---GRVLHYWLTYAPASGLGPEKSVSVP 57
Query: 88 CDTTSYQLTGLSPHTTYK 105
+ L L T Y+
Sbjct: 58 GARSHVTLPDLQAATKYR 75
Score = 44.0 bits (104), Expect = 5e-06
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P+ L ++T SL + W + V+HY L + G K +S
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPPLGR---VLHYWLTYAPASGLGPEKSVSVPG 58
Query: 277 NKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
++ TL L +T +R ++A+ G+S
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGRS 87
Score = 32.0 bits (73), Expect = 0.078
Identities = 14/61 (22%), Positives = 17/61 (27%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
Y G + G + DL+ T Y V V A T T P
Sbjct: 42 YAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSG 101
Query: 223 P 223
P
Sbjct: 102 P 102
Score = 26.3 bits (58), Expect = 7.2
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
A +AG S + T P P
Sbjct: 79 SAIYAAGRSEAVSATGQTACPSGP 102
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 55.1 bits (133), Expect = 7e-10
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 34 ITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL----ETSDPAQPSITCD 89
++ P P L T + W P +P+ Y + + P Q
Sbjct: 4 GSSGPDGPTQLR---ALNLTEGFAVLHWKPPQ---NPVDTYDIQVTAPGAPPLQAETPGS 57
Query: 90 TTSYQLTGLSPHTTY 104
Y L L HT Y
Sbjct: 58 AVDYPLHDLVLHTNY 72
Score = 41.3 bits (97), Expect = 5e-05
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 216 FTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKS 275
++ P D P + + T L W + V Y ++ A E S
Sbjct: 4 GSSGP---DGPTQLRALNLTEGFAVLHWKPPQNP---VDTYDIQVTAPGAPPLQAETPGS 57
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
++ L L T + + + ++ A+
Sbjct: 58 AV-DYPLHDLVLHTNYTATVRGLRGPNLTSPASITF 92
Score = 29.7 bits (67), Expect = 0.46
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
G A + DL T+Y V+ + + FTT P
Sbjct: 55 PGSAVDYPLHDLVLHTNYTATVRGLRGPNLT-SPASITFTTGLEAP 99
Score = 26.6 bits (59), Expect = 5.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTS 56
R + + TT P L ++ + + P+S
Sbjct: 77 RGLRGPNLTS-PASITFTTGLEAPRDLEAKEVTPSGPSS 114
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 56.8 bits (137), Expect = 1e-09
Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLE---------TSDPA 82
V P P + S ++ V + EP G PIL Y E S
Sbjct: 109 VQADTPSSPSIDQVEPYS----STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY 164
Query: 83 QPSITCDTTSYQLTGLSPHTTYK 105
+ GL P TTY
Sbjct: 165 DAKEASMEGIVTIVGLKPETTYA 187
Score = 54.1 bits (130), Expect = 9e-09
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILE----SDQGNATGDFKEISKSKN 277
P P+ + V ++ ++++ G ++ Y E ++ + + S
Sbjct: 114 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 172
Query: 278 KNFTLSKLTPSTCFRFRLAAVNQHGKS 304
T+ L P T + RLAA+N G
Sbjct: 173 GIVTIVGLKPETTYAVRLAALNGKGLG 199
Score = 30.9 bits (70), Expect = 0.37
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
A N G S S T P
Sbjct: 191 AALNGKGLGEISAASEFKTQPVQG 214
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 53.9 bits (130), Expect = 1e-09
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITC 88
++ P L + TPTSL +SW + S + +Y + S + ++
Sbjct: 2 SSVSSVPTKLEV---VAATPTSLLISWDASS---SSVSYYRITYGETGGNSPVQEFTVPG 55
Query: 89 DTTSYQLTGLSPHTTYK 105
+++ ++GLSP Y
Sbjct: 56 SSSTATISGLSPGVDYT 72
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
P ++V T TSL + W+A+ + V +Y + + +E + + + T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASSSS---VSYYRITYGETGGNSPVQEFTVPGSSSTAT 61
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+S L+P + + A +
Sbjct: 62 ISGLSPGVDYTITVYAYYSYYDL 84
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 56.6 bits (136), Expect = 1e-09
Identities = 38/203 (18%), Positives = 59/203 (29%), Gaps = 27/203 (13%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTTSY 93
P + + +T P S + W+ P S I Y+L + +I SY
Sbjct: 2 GPVEVFITETPSQ-PNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 94 QLTGLSPHTTYK-SVCQVYLI--SDKHTQKVDLTFESDQLYLSGLPNSEWPSLRTIILTL 150
+ GL P Y+ + + + T S + + + P + +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 151 YF-----RTAQVPGVPP----------YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDY 195
+ V V Y + D A S I DL PG Y
Sbjct: 119 SVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKY 178
Query: 196 AVCVQVHLEEIVGIASEPTLFTT 218
V V E+ T TT
Sbjct: 179 IVNVYQISEDGEQSLILSTSQTT 201
Score = 55.1 bits (132), Expect = 4e-09
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 20/166 (12%)
Query: 163 YVSDKGRDGKYKSI-YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT--- 218
K G++K G S I+ LKPG Y + + + TT
Sbjct: 36 RWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTS 95
Query: 219 ------------PPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNAT 266
P P + T +S + W +A D V + +E +
Sbjct: 96 TPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD---TVSGFRVEYELSEEG 152
Query: 267 GDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+ + + + L P + + +++ G+ + S +
Sbjct: 153 DEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
Score = 48.5 bits (115), Expect = 5e-07
Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 24/109 (22%)
Query: 18 RAGNSAGWSPFSETSVITT---------------PPGPPGSLTLRKTSVTTPTSLTVSWS 62
+ G + TT P P T + T +S VSW
Sbjct: 74 ISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWV 133
Query: 63 EPANHGSPILHYVLE------TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ + +E +P + TS + L P Y
Sbjct: 134 SA---SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYI 179
Score = 43.9 bits (103), Expect = 2e-05
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 226 PNPPKL--VTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTL 282
P + S ++WNA +H+ YIL N+ G +KE + + N +T+
Sbjct: 3 PVEVFITETPSQPNSHPIQWNA--PQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSV 318
L P + +L ++ Q+G S S
Sbjct: 61 KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTST 96
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 54.1 bits (130), Expect = 2e-09
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 20 GNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA----NHGSPILHYV 75
G+S + ++TP PP + T ++ VSW++ + S + Y
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAV---ALTHDAVRVSWADNSVPKNQKTSEVRLYT 57
Query: 76 LE-----TSDPAQPSITCDTTSYQLTGLSPHTTY 104
+ ++ S + SY TGL P+T Y
Sbjct: 58 VRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMY 91
Score = 41.4 bits (97), Expect = 6e-05
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAH----VMHYILESDQG 263
G + PT P + V T ++ + W V Y +
Sbjct: 4 GSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTS 63
Query: 264 NATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
+ + + + ++T + L P+T + F + S
Sbjct: 64 FSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
Score = 33.3 bits (76), Expect = 0.029
Identities = 11/59 (18%), Positives = 13/59 (22%)
Query: 165 SDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+ + S LKP T Y V V S TT
Sbjct: 61 RTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASG 119
Score = 32.5 bits (74), Expect = 0.059
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
+ S +S T+ TT S
Sbjct: 96 MVTKNRRSSTWSMTAHATTYEASGPS 121
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.3 bits (128), Expect = 2e-09
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 31 TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD--PAQPSITC 88
+S + P PP +LTL + TP ++ ++W A ++ + + +
Sbjct: 2 SSGSSGPLPPPRALTL---AAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQV 58
Query: 89 DTTSYQLTGLSPHTTY 104
L GL P Y
Sbjct: 59 GRPEVLLDGLEPGRDY 74
Score = 39.0 bits (91), Expect = 2e-04
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ P P P L T ++ L W + A HY++ + G+ +E
Sbjct: 5 SSGPLPP--PRALTLAAVTPRTVHLTWQPS----AGATHYLVRCSPASPKGEEEEREVQV 58
Query: 277 NKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+ L L P + + ++ S A
Sbjct: 59 GRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
Score = 25.9 bits (57), Expect = 9.5
Identities = 10/57 (17%), Positives = 15/57 (26%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
+ + + + L+PG DY V VQ A T
Sbjct: 42 CSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPT 98
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 53.5 bits (129), Expect = 3e-09
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 24 GWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL--- 76
G S S +VI + P P + ++ V + + ++V W + Y +
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVK---VLSSSEISVHWEHVLE--KIVESYQIRYW 55
Query: 77 ----ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ + +T S +L L P T Y
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLPDTQYF 88
Score = 33.9 bits (78), Expect = 0.019
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
A NSAG P S+ T S
Sbjct: 92 GACNSAGCGPPSDMIEAFTKKASGPS 117
Score = 33.5 bits (77), Expect = 0.028
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 208 GIASEPTLFTTPPCEPDQ-PNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNA 265
+S + + P + P + + + +++ W V V Y + +
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEH-VLEK-IVESYQIRYWAAHDK 60
Query: 266 TGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHG 302
+ + + L L P T + + A N G
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAG 98
Score = 30.8 bits (70), Expect = 0.23
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ + + + + S R+++L P T Y + V G S+ T
Sbjct: 55 WAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAS 114
Query: 223 P 223
Sbjct: 115 G 115
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.2 bits (138), Expect = 3e-09
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 33 VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG-SPILHYVLE----TSDPAQPSIT 87
P PP + ++ +SW PA G S + +Y +E P
Sbjct: 5 ADVPEPEPPRFPII---ENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK 61
Query: 88 CDTTSYQLTGLSPHTTYK 105
T + GL Y+
Sbjct: 62 SRYTYTTIEGLRAGKQYE 79
Score = 53.7 bits (129), Expect = 4e-08
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFT 281
P+ P P + ++ L W A+D G+ V +Y +E + G + +KS+ T
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMG-GSWSPCAKSRYTYTT 68
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+ L + FR+ A N+HG+S
Sbjct: 69 IEGLRAGKQYEFRIIAENKHGQS 91
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 53.5 bits (129), Expect = 3e-09
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 24 GWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS--PILHYVL- 76
G S S + T P P +L+L V S+ + W PA I Y +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLE---VRNSKSIMIHWQPPAPATQNGQITGYKIR 57
Query: 77 -----ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
SD + ++ S + GL T Y
Sbjct: 58 YRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYN 91
Score = 41.2 bits (97), Expect = 7e-05
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
Y + +++ +G S I+ L GT+Y V G A++ T +
Sbjct: 58 YRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 117
Query: 223 PDQPNPPKL 231
D+ P++
Sbjct: 118 LDETRVPEV 126
Score = 31.9 bits (73), Expect = 0.10
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTS 56
A G P ++ T R V+ P+S
Sbjct: 95 AALTINGTGPATDWLSAETFESDLDE--TRVPEVSGPSS 131
Score = 30.4 bits (69), Expect = 0.37
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGAHVMHYILESD 261
+S T P P+ ++ + S+ + W A NG + Y +
Sbjct: 3 SGSSGDVAVRTLSDVPSAA--PQNLSLEVRNSKSIMIHWQPPAPATQNG-QITGYKIRYR 59
Query: 262 QGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHG 302
+ + D E S + + L T + FR+AA+ +G
Sbjct: 60 KASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTING 101
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 52.2 bits (125), Expect = 7e-09
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 30 ETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQ 83
+ P L + TPTSL +SW PA + +Y + S +
Sbjct: 21 NLYFQGSVSDVPTKLEV---VAATPTSLLISWDAPA---VTVRYYRITYGETGGNSPVQE 74
Query: 84 PSITCDTTSYQLTGLSPHTTYK 105
++ ++ ++GL P Y
Sbjct: 75 FTVPGSKSTATISGLKPGVDYT 96
Score = 43.7 bits (103), Expect = 9e-06
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 216 FTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKS 275
D P ++V T TSL + W+A V +Y + + +E +
Sbjct: 22 LYFQGSVSDVPTKLEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSPVQEFTVP 78
Query: 276 KNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+K+ T+S L P + + AV +
Sbjct: 79 GSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPI 115
Score = 26.4 bits (58), Expect = 6.7
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ 200
Y G + G + I LKPG DY + V
Sbjct: 63 YGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVY 100
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 52.8 bits (127), Expect = 8e-09
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 24 GWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS--PILHYVL- 76
G S S T T P PP + T++ VSW P I Y +
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCV---SMGSTTVRVSWVPPPADSRNGVITQYSVA 57
Query: 77 -------ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ I+ + +S+ L GL T Y+
Sbjct: 58 YEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93
Score = 37.7 bits (88), Expect = 0.001
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 163 YVSDKGRDGKYKSIY--NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
Y + G D + + E S + L+ T+Y V V+ H + G S P L T
Sbjct: 58 YEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 221 CEPDQPNPPKLVTKTRTS 238
P PP+ V +S
Sbjct: 118 DVPSG--PPRKVESGPSS 133
Score = 32.7 bits (75), Expect = 0.055
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 18 RAGNSAGWSPFSETSVITT----PPGPPGSLTLRKTS 50
RA G P S ++ T P GPP + +S
Sbjct: 97 RAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 30.8 bits (70), Expect = 0.25
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 19/138 (13%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGAHVMHYIL--- 258
+S T P P P+ V T++ + W NG + Y +
Sbjct: 3 SGSSGTIEARTAQSTPSAP--PQKVMCVSMGSTTVRVSWVPPPADSRNG-VITQYSVAYE 59
Query: 259 ESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSV 318
D + + ++ ++ L L T +R + A G +++ V V
Sbjct: 60 AVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV------LV 113
Query: 319 YTPE-VKGSVPGGVKVFA 335
T E V P V+
Sbjct: 114 RTDEDVPSGPPRKVESGP 131
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 51.7 bits (124), Expect = 8e-09
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE----TSDPAQPSITCDT 90
++ P L TP + ++W+EP Y+L + +
Sbjct: 5 SSGLEAPRDLEA---KEVTPRTALLTWTEPP---VRPAGYLLSFHTPGGQTQEILLPGGI 58
Query: 91 TSYQLTGLSPHTTY 104
TS+QL GL P T+Y
Sbjct: 59 TSHQLLGLFPSTSY 72
Score = 36.3 bits (84), Expect = 0.002
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSK 276
++ + P + T + L W Y+L G +EI
Sbjct: 2 SSGSSGLEAPRDLEAKEVTPRTALLTWTEPP---VRPAGYLLSFHTPG--GQTQEILLPG 56
Query: 277 NKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
L L PST + RL A+ ++
Sbjct: 57 GITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
Score = 32.0 bits (73), Expect = 0.059
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 169 RDGKYKSIY-NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQP 226
G+ + I G S ++ L P T Y +Q + + T FTT P
Sbjct: 45 PGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTTGGLRISGP 102
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 51.6 bits (124), Expect = 9e-09
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTTSY 93
PP ++ + + T T+ V+W P PI ++ SD +T TS
Sbjct: 4 PPFNIKV---TNITLTTAVVTWQPPI---LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 94 QLTGLSPHTTY 104
LT L P+TTY
Sbjct: 58 TLTNLEPNTTY 68
Score = 40.1 bits (94), Expect = 8e-05
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 224 DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTL 282
P K+ T T+ + W + + ++ + N D + + + TL
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPI---LPIEGILVTFGRKNDPSDETTVDLTSSITSLTL 59
Query: 283 SKLTPSTCFRFRLAAVNQHGKS 304
+ L P+T + R+ A N S
Sbjct: 60 TNLEPNTTYEIRIVARNGQQYS 81
Score = 32.4 bits (74), Expect = 0.042
Identities = 7/63 (11%), Positives = 15/63 (23%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ + S + +L+P T Y + + + T T
Sbjct: 36 FGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEH 95
Query: 223 PDQ 225
Sbjct: 96 HHH 98
Score = 26.2 bits (58), Expect = 6.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPP 41
A N +SP T+ T
Sbjct: 73 VARNGQQYSPPVSTTFTTGSLEHH 96
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 54.8 bits (131), Expect = 1e-08
Identities = 42/328 (12%), Positives = 93/328 (28%), Gaps = 41/328 (12%)
Query: 1 MSMVCQSCTDHKV-----STEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPT 55
S + C H V WS +S I+ P + + + +
Sbjct: 155 ASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGS 214
Query: 56 SLTVSWSEPANHGSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISD 115
+T +L ++ ++ + + + ++ +S + V ++
Sbjct: 215 DITFCC----VSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTE 268
Query: 116 KHTQKVDLTF---------------ESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGV 160
+ + + ++ S P +L T Y G
Sbjct: 269 DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRV-TALVGPRATSYTLVESFSG- 326
Query: 161 PPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
K K E+ Q L Y ++ +G + L
Sbjct: 327 ------KYVRLKRAEAPTNESYQLLFQMLPNQEIY--NFTLNAHNPLGRSQSTILVNITE 378
Query: 221 CE-PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEIS----KS 275
P P K+ T++ L W+ + +E + N+ + + ++ ++
Sbjct: 379 KVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVEN 438
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHGK 303
+ L KL P T + FR+ +
Sbjct: 439 SSYLVALDKLNPYTLYTFRIRCSTETFW 466
Score = 53.3 bits (127), Expect = 5e-08
Identities = 60/358 (16%), Positives = 106/358 (29%), Gaps = 47/358 (13%)
Query: 5 CQSCTDHKVSTEDRAGNSAGWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSW 61
S D++++ + + G S T P P L L ++ + ++L + W
Sbjct: 51 ALSHGDYEITIN--SLHDFGSSTSKFTLNEQNVSLIPDTPEILQL--SADFSTSTLYLKW 106
Query: 62 SEPAN---HGSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHT 118
++ + H S ++ + + + T L G + + L H
Sbjct: 107 NDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHF 166
Query: 119 QKVDLTFESDQLYLSGLPN-SEWPSLRTIILTLYFRTAQVPGVP---------------- 161
++ D L+ SGL S+W ++ I +T P
Sbjct: 167 VEI--RCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE 224
Query: 162 -PYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ G +GE + +I+++ V E+ + +F P
Sbjct: 225 KVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGT---VIFAGYP 281
Query: 221 CEPDQPNPPKLVTKTRTSLALKWNAAVD---NGAHVMHYILESDQGNATGDFKEISKSKN 277
PD P T + WN G Y L K N
Sbjct: 282 --PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTN 339
Query: 278 KNF--TLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
+++ L + F L A N G+S V T +V P KV
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILV-------NITEKVYPHTPTSFKV 390
Score = 45.6 bits (107), Expect = 1e-05
Identities = 29/229 (12%), Positives = 52/229 (22%), Gaps = 41/229 (17%)
Query: 21 NSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANH---GSPILHYVL- 76
+ + F PP P L + SW+ G Y L
Sbjct: 265 FTTEDNIFGTVIFAGYPPDTPQQLNCETHD---LKEIICSWNPGRVTALVGPRATSYTLV 321
Query: 77 ------ETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVY--------LISDKHTQKV- 121
+ T ++ L Y + I T+KV
Sbjct: 322 ESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVY 381
Query: 122 -----DLTFE---SDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKY 173
+ S + LS + + + + + + V+ +G +
Sbjct: 382 PHTPTSFKVKDINSTAVKLSWHLPGNFAKI-NFLCEIEIKKSNSVQEQRNVTIQGVENSS 440
Query: 174 KSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGI--ASEPTLFTTPP 220
+ L P T Y ++ E S T
Sbjct: 441 --------YLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTE 481
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 51.8 bits (124), Expect = 1e-08
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 208 GIASEPTLFTTPPCEPDQPN-PPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNAT 266
G + P+ P+ +L T + ++ + W + D+ + Y L+
Sbjct: 1 GSSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWIS--DDEFSISSYELQYTIFTGQ 58
Query: 267 GDFKE----------ISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+F + K ++T+ L T + F + A+NQ G
Sbjct: 59 ANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSR 106
Score = 47.2 bits (112), Expect = 6e-07
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 21/99 (21%)
Query: 22 SAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE---- 77
S+G S E T P PP + + ++TV W I Y L+
Sbjct: 2 SSGSS--GEGLDYLTAPNPPSIRE--ELCTASHDTITVHWISD--DEFSISSYELQYTIF 55
Query: 78 -----------TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ D Y + GL T Y
Sbjct: 56 TGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYI 94
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 53.1 bits (127), Expect = 2e-08
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY 74
A N+ G + P PP +L++ + + L ++W+ P+ IL Y
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL-SSILKLTWTNPSIKSVIILKY 139
Query: 75 VLETSDPAQPS--------ITCDTTSYQLTGLSPHTTY 104
++ + +S+ + L P T Y
Sbjct: 140 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 177
Score = 42.3 bits (99), Expect = 8e-05
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQ-DLKPGTDYAVCVQVHLEEIVG-IASEPTLFTTPP 220
SC + + V V+ E +G + S+ F P
Sbjct: 43 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA--ENALGKVTSDHINFD--P 98
Query: 221 CEPDQPNPPKLVT-----KTRTSLALKWNAAVDNGAHVMHYILE---SDQGNATGDFKEI 272
+PNPP ++ + + L L W ++ Y ++ D + E
Sbjct: 99 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 158
Query: 273 SKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ S +FT+ L P T + FR+ + + GK
Sbjct: 159 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 190
Score = 41.5 bits (97), Expect = 1e-04
Identities = 28/210 (13%), Positives = 56/210 (26%), Gaps = 23/210 (10%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCD------ 89
PP P +L+ V + W ++ L++ C
Sbjct: 6 LPPEKPKNLSCI---VNEGKKMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKRDTP 61
Query: 90 TTSYQLTGLSPHTTYK-SVCQVYLISDKHTQKVDLT-FESDQLYLSGLPNSEWPSLRTII 147
T+ + V + + ++ + + + I
Sbjct: 62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSI 121
Query: 148 LTLYFRTAQVPGVPP------YVSDKGRDGKYKSIYNGEAQ--SCRIQDLKPGTDYAVCV 199
L L + + V Y + + + S +QDLKP T+Y +
Sbjct: 122 LKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 181
Query: 200 QVHLEEIVGIASE---PTLFTTPPCEPDQP 226
+ E+ G S+ T P +
Sbjct: 182 RCMKEDGKGYWSDWSEEASGITYEDRPSKE 211
Score = 28.0 bits (62), Expect = 4.2
Identities = 9/82 (10%), Positives = 20/82 (24%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
P++P + + +W+ + + + D K +
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 283 SKLTPSTCFRFRLAAVNQHGKS 304
+ A N GK
Sbjct: 68 YSTVYFVNIEVWVEAENALGKV 89
Score = 26.9 bits (59), Expect = 8.0
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 18 RAGNSAG---WSPFSETSVITTPPGPP 41
R G WS +SE + T P
Sbjct: 182 RCMKEDGKGYWSDWSEEASGITYEDRP 208
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 50.6 bits (121), Expect = 3e-08
Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 15/94 (15%)
Query: 24 GWSPFSETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHYVL- 76
G S S + +T P P ++T+ + ++ + W +P ++ Y +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLN--ESSDNVDIRWMKPPTKQQDGELVGYRIS 58
Query: 77 ------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
S + + + +++ + T
Sbjct: 59 HVWQSAGISKELLEEVGQNGSRARISVQVHNATC 92
Score = 33.6 bits (77), Expect = 0.029
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 208 GIASEPTLFTTPPCEPDQP--NPPKLVTKTRTSLALKWNAAVDNGAH--VMHYIL---ES 260
+S L +T P N + ++ ++ ++W ++ Y +
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 261 DQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
G + +E+ ++ + +S + R+AAV + G
Sbjct: 63 SAGISKELLEEVGQNGS-RARISVQVHNATCTVRIAAVTRGG 103
Score = 31.3 bits (71), Expect = 0.15
Identities = 9/58 (15%), Positives = 12/58 (20%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
G + RI V + VG S+P P
Sbjct: 60 VWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPA 117
Score = 29.4 bits (66), Expect = 0.79
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITTPP-GPPGS 43
A G PFS+ I P P S
Sbjct: 97 AAVTRGGVGPFSDPVKIFIPAHSGPSS 123
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 49.7 bits (119), Expect = 4e-08
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDT 90
P + + T T+ ++W P+ P+ + L D +T D
Sbjct: 2 RLDAPSQIEV---KDVTDTTALITWMPPS---QPVDGFELTYGIKDVPGDRTTIDLTEDE 55
Query: 91 TSYQLTGLSPHTTYK 105
Y + L P T Y+
Sbjct: 56 NQYSIGNLKPDTEYE 70
Score = 42.0 bits (99), Expect = 2e-05
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
D P+ ++ T T+ + W V + L + GD I ++++N ++
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPS---QPVDGFELTYGIKDVPGDRTTIDLTEDENQYS 59
Query: 282 LSKLTPSTCFRFRLAAVNQHGKS 304
+ L P T + L + S
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSS 82
Score = 31.2 bits (71), Expect = 0.13
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 167 KGRDGKYKSIY-NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQ 225
K G +I + I +LKP T+Y V + ++ ++ T FTT +
Sbjct: 40 KDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKET-FTTGLAAALE 98
Query: 226 P 226
Sbjct: 99 H 99
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 49.4 bits (118), Expect = 5e-08
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 39 GPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTTS 92
P L + T TS+TVSW+ P+ + I Y + +P + ++ +TS
Sbjct: 3 DAPTDLQ---VTNVTDTSITVSWTPPS---ATITGYRITYTPSNGPGEPKELTVPPSSTS 56
Query: 93 YQLTGLSPHTTYK 105
+TGL+P Y
Sbjct: 57 VTITGLTPGVEYV 69
Score = 42.4 bits (100), Expect = 1e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 224 DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTL 282
D P ++ T TS+ + W A + Y + N G+ KE++ + T+
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP---SATITGYRITYTPSNGPGEPKELTVPPSSTSVTI 59
Query: 283 SKLTPSTCFRFRLAAVNQHGKS 304
+ LTP + + A+ + +S
Sbjct: 60 TGLTPGVEYVVSVYALKDNQES 81
Score = 29.3 bits (66), Expect = 0.61
Identities = 12/61 (19%), Positives = 16/61 (26%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
Y G + + S I L PG +Y V V + T T
Sbjct: 36 YTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHH 95
Query: 223 P 223
Sbjct: 96 H 96
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 52.6 bits (125), Expect = 5e-08
Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 35/308 (11%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPAN-HGSPILHYVLETSDPAQPSITCDTTSY 93
T P +L++ SV ++ +W+ P + L Y D I +T
Sbjct: 1 TETQPPVTNLSV---SVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRS 57
Query: 94 QLTGLSPHTTYKSVCQVYL-ISDKHTQKVDLTFESDQLYLSGLPNS---EWPSLRTIILT 149
L+ + Q S+K + V+ + W +L + +
Sbjct: 58 IEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCS 117
Query: 150 LYFRTAQVPGVP--PYVSDKGRDGKYK---SIYNGEAQSCRIQ----DLKPGTDYAVCVQ 200
P Y + + ++ G+ C ++V +
Sbjct: 118 WLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIM 177
Query: 201 VHLEEIVGIASEPTLFTTPPCEPDQPNPPKL--VTKTRTSLALKWNAAVDNGAHVMHYIL 258
V + +P+ P +P+PP + ++ L ++W + + + Y +
Sbjct: 178 V---KDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEV 234
Query: 259 E-------------SDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSA 305
E + E + F + + P T R+
Sbjct: 235 EVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYE 294
Query: 306 DATSVAEW 313
D + W
Sbjct: 295 DDKLWSNW 302
Score = 43.0 bits (100), Expect = 7e-05
Identities = 30/245 (12%), Positives = 69/245 (28%), Gaps = 37/245 (15%)
Query: 12 KVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPI 71
+V ++ S S E + P ++T + + + SW N
Sbjct: 69 QVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDT 128
Query: 72 LHYVLETSDPAQPSITCDTTS---------YQLTGLSPHTTYKSVCQVYLISDKHT---- 118
+ + + C+ + LT + + + Q+ + +
Sbjct: 129 NYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS 188
Query: 119 ---------------QKVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPY 163
+L+F +D LY+ + S R + + +Q +
Sbjct: 189 FNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFIS-RCLFYEVEVNNSQTETHNVF 247
Query: 164 VSDKGRDGKYKSIYNGEAQSC-RIQDLKPGTDYAVCVQVHLEEIVGIA-------SEPTL 215
+ + + N E SC + + P T V ++V ++ S+
Sbjct: 248 YVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMS 307
Query: 216 FTTPP 220
Sbjct: 308 IGKKR 312
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 49.4 bits (118), Expect = 6e-08
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 32 SVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA-NHGSPILHYVLETSDPAQP-SITCD 89
S ++ L+L+ P L ++W+ + L Y L + +
Sbjct: 2 SSGSSGAESLSGLSLKLVKKE-PRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL 60
Query: 90 TTSYQLTGLSPHTTY 104
LT L P TTY
Sbjct: 61 EPRVLLTKLQPDTTY 75
Score = 30.1 bits (68), Expect = 0.30
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ L+P T Y V V+ G S F T P
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 100
Score = 29.8 bits (67), Expect = 0.39
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 217 TTPPCEPDQPNPPKLVTKTRTSLALKWNAAV-DNGAHVMHYILESDQGNATGDFKEISKS 275
+ E KLV K L L W + N + Y L D +
Sbjct: 4 GSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHV----LNQDEEWHQMV 59
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHG 302
L+KL P T + R+ + G
Sbjct: 60 LEPRVLLTKLQPDTTYIVRVRTLTPLG 86
Score = 29.8 bits (67), Expect = 0.50
Identities = 10/27 (37%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITT-PPGPPGS 43
R G PFS T PP P S
Sbjct: 80 RTLTPLGPGPFSPDHEFRTSPPSGPSS 106
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 49.0 bits (117), Expect = 7e-08
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTTSY 93
P +L + S T SL +SW+ P + ++++ + ++ SY
Sbjct: 4 APKNLVV---SEVTEDSLRLSWTAPD---AAFDSFMIQYQESEKVGEAINLTVPGSERSY 57
Query: 94 QLTGLSPHTTYK 105
LTGL P T Y
Sbjct: 58 DLTGLKPGTEYT 69
Score = 41.7 bits (98), Expect = 3e-05
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 224 DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTL 282
P + T SL L W A ++++ + G+ ++ ++ + L
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPDAA---FDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADATSVA 311
+ L P T + + V +S ++
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
Score = 25.9 bits (57), Expect = 7.7
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ 200
Y + G +S + LKPGT+Y V +
Sbjct: 36 YQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 48.8 bits (117), Expect = 8e-08
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS--PILHYVL---ETSDPAQPSITCDTT 91
P G P +L + T ++ ++W P I+ Y + + + + T
Sbjct: 8 PSGFPQNLHVT---GLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDT 64
Query: 92 SYQLTGLSPHTTY 104
+ LTGL P TTY
Sbjct: 65 RFTLTGLKPDTTY 77
Score = 34.6 bits (80), Expect = 0.008
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ + + + + LKP T Y + V+ + G S T P
Sbjct: 49 RDINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMP 102
Score = 28.8 bits (65), Expect = 0.82
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 18 RAGNSAGWSPFSETSVITTPP 38
RA S G P S + T P
Sbjct: 82 RAWTSKGSGPLSPSIQSRTMP 102
Score = 28.4 bits (64), Expect = 1.1
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 217 TTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGAHVMHYILESDQGNATGDFK 270
++ P P+ + T ++ L W+ A NG ++ Y + N+ + +
Sbjct: 2 SSGSSGPSGF--PQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQ 58
Query: 271 EISKSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
I+ + FTL+ L P T + ++ A G
Sbjct: 59 NITT--DTRFTLTGLKPDTTYDIKVRAWTSKG 88
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 49.1 bits (117), Expect = 9e-08
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTT 91
P L + TPTSL +SW +Y + S + ++
Sbjct: 4 SDVPRDLEV---VAATPTSLLISWDSGR---GSYQYYRITYGETGGNSPVQEFTVPGPVH 57
Query: 92 SYQLTGLSPHTTYK 105
+ ++GL P Y
Sbjct: 58 TATISGLKPGVDYT 71
Score = 42.6 bits (100), Expect = 2e-05
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FT 281
D P ++V T TSL + W++ +Y + + +E + + T
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG---RGSYQYYRITYGETGGNSPVQEFTVPGPVHTAT 60
Query: 282 LSKLTPSTCFRFRLAAVNQHGKSADATSVAE 312
+S L P + + AV H AD
Sbjct: 61 ISGLKPGVDYTITVYAVTDHKPHADGPHTYH 91
Score = 31.8 bits (72), Expect = 0.087
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
Y G + G + I LKPG DY + V + T +P
Sbjct: 38 YGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESP 94
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 51.7 bits (123), Expect = 1e-07
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY 74
A N+ G + P PP +L++ + + L ++W+ P+ IL Y
Sbjct: 177 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL-SSILKLTWTNPSIKSVIILKY 235
Query: 75 VLETSDPAQPS--------ITCDTTSYQLTGLSPHTTY 104
++ + +S+ + L P T Y
Sbjct: 236 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 273
Score = 39.4 bits (91), Expect = 0.001
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 14/152 (9%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQ-DLKPGTDYAVCVQVHLEEIVG-IASEPTLFTTPP 220
SC + + V V E +G + S+ F P
Sbjct: 139 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI--EVWVEAENALGKVTSDHINFD--P 194
Query: 221 CEPDQPNPP-----KLVTKTRTSLALKWNAAVDNGAHVMHYILE---SDQGNATGDFKEI 272
+PNPP + + L L W ++ Y ++ D + E
Sbjct: 195 VYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPED 254
Query: 273 SKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
+ S +FT+ L P T + FR+ + + GK
Sbjct: 255 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKG 286
Score = 33.6 bits (76), Expect = 0.072
Identities = 25/199 (12%), Positives = 50/199 (25%), Gaps = 20/199 (10%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCD------TTSY 93
PP V + W ++ L++ C T+
Sbjct: 103 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLET-NFTLKSEWATHKFADCKAKRDTPTSCT 161
Query: 94 QLTGLSPHTTYK-SVCQVYLISDKHTQKVDLT-FESDQLYLSGLPNSEWPSLRTIILTLY 151
+ V + + ++ + + + IL L
Sbjct: 162 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLT 221
Query: 152 FRTAQVPGVPP------YVSDKGRDGKYKSIYNGEAQ--SCRIQDLKPGTDYAVCVQVHL 203
+ + V Y + + + S +QDLKP T+Y ++
Sbjct: 222 WTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 281
Query: 204 EEIVGIASE---PTLFTTP 219
E+ G S+ T
Sbjct: 282 EDGKGYWSDWSEEASGITY 300
Score = 29.8 bits (66), Expect = 1.4
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 2/142 (1%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+ + +I N A S D+ C + ++ T+ + P
Sbjct: 46 KTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP-- 103
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
P++P + + +W+ + + + D K +
Sbjct: 104 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 163
Query: 283 SKLTPSTCFRFRLAAVNQHGKS 304
+ A N GK
Sbjct: 164 YSTVYFVNIEVWVEAENALGKV 185
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 47.9 bits (114), Expect = 1e-07
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCD 89
S ++ + T +S VSW + + + +E +P +
Sbjct: 4 GSHLVATSESV---TEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 90 TTSYQLTGLSPHTTYK 105
TS + L P Y
Sbjct: 58 ATSVNIPDLLPGRKYI 73
Score = 46.7 bits (111), Expect = 4e-07
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 219 PPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNK 278
P + T +S + W +A D V + +E + + + +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSASDT---VSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 279 N-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAE 312
+ L P + + +++ G+ + S ++
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 30.2 bits (68), Expect = 0.26
Identities = 16/56 (28%), Positives = 18/56 (32%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
Y + D A S I DL PG Y V V E+ T TT
Sbjct: 40 YELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 47.5 bits (113), Expect = 3e-07
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 24 GWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHYVL--ETS 79
G S S T +TT PP T T + ++W + + S + Y + TS
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60
Query: 80 DPAQPSITCDTTSYQLTGLSPHTTY 104
+ + L Y
Sbjct: 61 SQNNVQVLNTNKTSAELVLPIKEDY 85
Score = 34.0 bits (78), Expect = 0.014
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 13/124 (10%)
Query: 208 GIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNA--AVDNGAHVMHYILESDQGNA 265
+S TT P QP + T T + L W A++N + V Y +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV---FYRT 59
Query: 266 TGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKG 325
+ + NK L + + A G S + P +
Sbjct: 60 SSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGT--------SSEQIRIPRITS 111
Query: 326 SVPG 329
S P
Sbjct: 112 SGPS 115
Score = 26.7 bits (59), Expect = 6.2
Identities = 6/27 (22%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSET-SVITTPPGPPGS 43
+A G SE + P S
Sbjct: 90 KATTDGGDGTSSEQIRIPRITSSGPSS 116
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 47.0 bits (112), Expect = 3e-07
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHYVL--------ETSDPAQP 84
+TP P + T + + W+ N+ +PI + + SD +
Sbjct: 2 STPITGPHIAYTE---AVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD 58
Query: 85 SITCDTTSYQLTGLSPHTTY 104
+ + + L P T+Y
Sbjct: 59 VVEGSKQWHMIGHLQPETSY 78
Score = 32.3 bits (74), Expect = 0.051
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 174 KSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT 218
+ + G Q I L+P T Y + +Q E S + T
Sbjct: 57 RDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 32.0 bits (73), Expect = 0.071
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 228 PPKLVT---KTRTSLALKWNA--AVDNGAHVMHYIL--ESDQGNATGDFKEISKSKNKN- 279
P + + T + LKW + +N + + + + D+K +K
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 280 FTLSKLTPSTCFRFRLAAVNQHGKS 304
+ L P T + ++ N+ G+S
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGES 91
Score = 26.6 bits (59), Expect = 5.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 18 RAGNSAGWSPFSETSVITT 36
+ N G S FS + T
Sbjct: 83 QCFNEGGESEFSNVMICET 101
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 47.1 bits (112), Expect = 4e-07
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 31 TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA----NHGSPILHYVLE-----TSDP 81
+S + P PP + + + ++ ++W++ + + +Y + ++
Sbjct: 2 SSGSSGPMMPPVGVQAS---ILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT 58
Query: 82 AQPSITCDTTSYQLTGLSPHTTY 104
+ T SY +TGL P+T Y
Sbjct: 59 KYKNANATTLSYLVTGLKPNTLY 81
Score = 37.9 bits (88), Expect = 7e-04
Identities = 12/61 (19%), Positives = 13/61 (21%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
N S + LKP T Y V V S TT
Sbjct: 49 RWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELS 108
Query: 223 P 223
Sbjct: 109 G 109
Score = 37.1 bits (86), Expect = 0.001
Identities = 11/111 (9%), Positives = 32/111 (28%), Gaps = 11/111 (9%)
Query: 217 TTPPCEPDQ-PNPPKLVTKTRTSLALKWNAAVDNG----AHVMHYILESDQGNATGDFKE 271
++ P P + + ++ + W +Y + +
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK 61
Query: 272 ISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE 322
+ + ++ ++ L P+T + F + S + + T E
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA------HGTTFE 106
Score = 32.9 bits (75), Expect = 0.034
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
S +S T+ TT S
Sbjct: 86 MVTKGRRSSTWSMTAHGTTFELSGPS 111
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 46.6 bits (111), Expect = 4e-07
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCDTTSY 93
P L + S+ ++W P + Y + P+ + +
Sbjct: 4 RPKGLA---FTDVDVDSIKIAWESPQ---GQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 94 QLTGLSPHTTYK 105
+L GL P + Y
Sbjct: 58 ELQGLRPGSEYT 69
Score = 35.8 bits (83), Expect = 0.003
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 224 DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILE-SDQGNATGDFKEISKSKNKNFTL 282
D+P S+ + W + V Y + S + + + L
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQGQ---VSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 283 SKLTPSTCFRFRLAAVNQHGKS 304
L P + + + A++ +S
Sbjct: 60 QGLRPGSEYTVSVVALHDDMES 81
Score = 30.8 bits (70), Expect = 0.13
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
Y S + + +GE + +Q L+PG++Y V V +++ T T P
Sbjct: 36 YSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAIP 93
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 48.8 bits (115), Expect = 6e-07
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 17 DRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
AG T+P + K S ++TV+W+EP + Y+L
Sbjct: 127 GLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTE-GLEGYIL 185
Query: 77 ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
I D TSY L+ HT Y
Sbjct: 186 YKDGKKVAEIGKDETSYTFKKLNRHTIYN 214
Score = 46.5 bits (109), Expect = 3e-06
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 216 FTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKS 275
T+P + K + ++ + W + YIL D
Sbjct: 144 GTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG-LEGYILYKDGKKVA-----EIGK 197
Query: 276 KNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSV 310
++T KL T + F++AA +G+ + S+
Sbjct: 198 DETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESL 232
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 49.0 bits (116), Expect = 1e-06
Identities = 40/304 (13%), Positives = 83/304 (27%), Gaps = 35/304 (11%)
Query: 25 WSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPAN---HGSPILHYVL----E 77
+ +S PP + L + W P + + Y L
Sbjct: 19 TFGCTSSSDTEIKVNPPQDFEI--VDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNI 76
Query: 78 TSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLYLSGLPN 137
S+ + IT + L+ + ++ E+
Sbjct: 77 GSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIP 136
Query: 138 SEWP------SLRTIILTLYFRTAQVPGVPP----YVSDKGRDGKYKSIY----NGEAQS 183
L ++ + + +G D + + +G+
Sbjct: 137 ETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIG 196
Query: 184 CRIQ--DLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVT---KTRTS 238
CR + D+ +CV E + FT +P PP +T ++
Sbjct: 197 CRFPYLEASDYKDFYICVNGSSE---NKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCE 253
Query: 239 LALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAA 297
+ LKW+ A Y +E + + T + +N+ +TL + F + +
Sbjct: 254 IKLKWSIPLGPIPARCFDYEIEIREDDTT---LVTATVENETYTLKTTNETRQLCFVVRS 310
Query: 298 VNQH 301
Sbjct: 311 KVNI 314
Score = 43.6 bits (102), Expect = 5e-05
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 9/94 (9%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSP-ILH 73
+ S + P PP LT + S + + WS P
Sbjct: 215 NGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRES---SCEIKLKWSIPLGPIPARCFD 271
Query: 74 YVLE--TSDPAQPSITCDTTSYQLTGLSPHTTYK 105
Y +E D + T + +Y L +
Sbjct: 272 YEIEIREDDTTLVTATVENETYTLKTTNETRQLC 305
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 45.4 bits (108), Expect = 2e-06
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 29 SETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPA--NHGSPILHYVL------ 76
S +S I+T P GPP +TL+ T S+ V+W P I Y +
Sbjct: 3 SGSSGISTEEAAPDGPPMDVTLQ---PVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENS 59
Query: 77 ----ETSDPAQPSITCDTTSYQLTGLSPHTTYK 105
+ T D+ Y L L Y
Sbjct: 60 PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYG 92
Score = 34.3 bits (79), Expect = 0.017
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
+A N AG P S TT P S
Sbjct: 96 QAFNRAGTGPSSSEINATTLESGPSS 121
Score = 33.9 bits (78), Expect = 0.020
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 211 SEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGA---HVMHYILESD 261
S + +T PD P P VT T S+ + W A + NG + + Y S
Sbjct: 3 SGSSGISTEEAAPDGP--PMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSP 60
Query: 262 QGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHG 302
N E+ + + +TL L + + A N+ G
Sbjct: 61 GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG 102
Score = 32.0 bits (73), Expect = 0.10
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTP 219
G+++ + +LK Y V VQ G +S TT
Sbjct: 74 TGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTL 115
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 44.8 bits (106), Expect = 3e-06
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWS--EPANHGSPILHYVL--------ETSDPAQPSI 86
P P + T++ + W +N+ +PI + + SD + +
Sbjct: 8 PVAGPYITFTDAVN---ETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 87 TCDTTSYQLTGLSPHTTY 104
D + ++ L P T+Y
Sbjct: 65 EGDRYWHSISHLQPETSY 82
Score = 37.8 bits (88), Expect = 7e-04
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 217 TTPPCEPDQPNPPKLVT---KTRTSLALKWNA--AVDNGAHVMHYIL---ESDQGNATGD 268
++ P P + T++ LKW A +N + + + +D N +
Sbjct: 2 SSGSSGP--VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDY 59
Query: 269 FKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
K++ + ++S L P T + ++ N+ G+S
Sbjct: 60 KKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGES 95
Score = 34.0 bits (78), Expect = 0.019
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 165 SDKGRDGKYKSI-YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEP 223
+D D YK G+ I L+P T Y + +Q E S + T
Sbjct: 51 TDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSG 110
Query: 224 DQP 226
Sbjct: 111 PSS 113
Score = 27.8 bits (62), Expect = 2.3
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 18 RAGNSAGWSPFSETSVITTPP-GPPGS 43
+ N G S FS + T P S
Sbjct: 87 QCFNEGGESEFSNVMICETKARSGPSS 113
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 45.1 bits (106), Expect = 9e-06
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 3/120 (2%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRT 237
C++Q + VQ+ + L P P L + +
Sbjct: 54 EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 113
Query: 238 SLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAA 297
L L WN H + ++++ + + + E S F+L + + FR+ +
Sbjct: 114 QLELNWNN--RFLNHCLEHLVQY-RTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRS 170
Score = 37.8 bits (87), Expect = 0.002
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 21 NSAGWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ + + P P +LTL K S + L ++W+ + L ++++
Sbjct: 79 DPREPRRQATQMLKLQNLVIPWAPENLTLHKLS---ESQLELNWNNR--FLNHCLEHLVQ 133
Query: 78 TSDPAQPS----ITCDTTSYQLTGLSPHTTY 104
S + L + Y
Sbjct: 134 YRTDWDHSWTEQSVDYRHKFSLPSVDGQKRY 164
Score = 26.6 bits (58), Expect = 9.1
Identities = 7/60 (11%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA------SEPTLFTTPP 220
D + + + Y V+ + G A S P + +
Sbjct: 136 TDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT 195
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 45.8 bits (107), Expect = 1e-05
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 18/100 (18%)
Query: 18 RAGNSAGWSPFSE----TSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILH 73
+A + S +SE + I PP + S + P G+ +
Sbjct: 286 QASDGNNTSFWSEEIKFDTEIQAFLLPPV-----FNIRSLSDSFHIYIGAPKQSGNTPVI 340
Query: 74 ---------YVLETSDPAQPSITCDTTSYQLTGLSPHTTY 104
E + A+ I T + L P T Y
Sbjct: 341 QDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVY 380
Score = 45.4 bits (106), Expect = 2e-05
Identities = 36/280 (12%), Positives = 76/280 (27%), Gaps = 28/280 (10%)
Query: 52 TTPTSLTVSWSEPANHGSPI---LHYVLETSDPAQPSITCDTTS-----YQLTGLSPHTT 103
+ + W+ + Y D C + + L+ +
Sbjct: 18 IIDDNFILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEE 77
Query: 104 YKSVCQVYLISDKHTQKV-DLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPP 162
K ++ + + +F + G P + I+ + +
Sbjct: 78 IK--LRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWA 135
Query: 163 --------YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLE--EIVGIASE 212
+ + +I L P T Y + V+ L +G+ S
Sbjct: 136 LDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSP 195
Query: 213 PTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYI---LESDQGNATGDF 269
T P V+ + LKW+ N + ++ L+ + GN +
Sbjct: 196 VHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKW 255
Query: 270 KEISKSKNKNFTLSKLT----PSTCFRFRLAAVNQHGKSA 305
K+I +N T + R+ A + + S
Sbjct: 256 KQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 295
Score = 45.0 bits (105), Expect = 2e-05
Identities = 53/308 (17%), Positives = 83/308 (26%), Gaps = 23/308 (7%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPG-SLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL 76
+ S+ + S T GPP L ++ S S Y L
Sbjct: 86 KENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSL 145
Query: 77 ---ETSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVYLISDKHTQKVDLTFESDQLYL 132
+ S + I + +++ LSP TTY V L S K + +
Sbjct: 146 VIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVEN 205
Query: 133 SGLP---NSEWPSLRTIILT-LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCR--- 185
P + +L Y V + R+ + C
Sbjct: 206 ELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVK 265
Query: 186 ------IQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSL 239
Q++ Y + VQ SE F T P P + S
Sbjct: 266 TTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLP-PVFNIRSLSDSF 324
Query: 240 ALKWNAAVD--NGAHVMHYIL--ESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRL 295
+ A N + Y L E T + + K + T+ L P T + +
Sbjct: 325 HIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKA 384
Query: 296 AAVNQHGK 303
A K
Sbjct: 385 RAHTMDEK 392
Score = 38.1 bits (87), Expect = 0.004
Identities = 24/246 (9%), Positives = 56/246 (22%), Gaps = 44/246 (17%)
Query: 9 TDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHG 68
T + + + S +S I T + + W +
Sbjct: 174 TTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANM 233
Query: 69 SPILHYVLETSDP------------AQPSITCDTTSYQLTGLSPHTTYK----------- 105
+ + ++ T + Y
Sbjct: 234 TFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 293
Query: 106 --SVCQVYLISDKHTQ----KVDLTFESDQLYLS-GLPNSEWPSLRTIILTLYFRTAQVP 158
++ ++ ++ SD ++ G P + L +
Sbjct: 294 SFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYE----- 348
Query: 159 GVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI----VGIASEPT 214
+ + + K + + +LKP T Y V + H + + S+
Sbjct: 349 ---IIFWENTSNAERK--IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAV 403
Query: 215 LFTTPP 220
T P
Sbjct: 404 CEKTKP 409
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 44.7 bits (105), Expect = 1e-05
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 18 RAGNSAGWSPFSETSVITTP---PGPPGSLTLRKTSV-TTPTSLTVSWSEPANHGSPILH 73
A N G S E V T P PP L + L + WS P
Sbjct: 80 NATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGW 139
Query: 74 YVL--------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
+ L E + + T +++ L P Y
Sbjct: 140 FTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKY 178
Score = 39.3 bits (91), Expect = 7e-04
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 13/136 (9%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKT-- 235
G SC + V+ +G +S QP+PP +
Sbjct: 56 TGGPNSCHFGKQYTSMWRTYIMMVNATNQMG-SSFSDELYVDVTYIVQPDPPLELAVEVK 114
Query: 236 -----RTSLALKWN----AAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLT 286
+ L +KW+ + G + Y + A +++ + F + L
Sbjct: 115 QPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA-EWEIHFAGQQTEFKILSLH 173
Query: 287 PSTCFRFRLAAVNQHG 302
P + ++ HG
Sbjct: 174 PGQKYLVQVRCKPDHG 189
Score = 31.2 bits (70), Expect = 0.34
Identities = 32/206 (15%), Positives = 55/206 (26%), Gaps = 28/206 (13%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYV------LETSDPAQPSITCDT 90
PPG P R + T T W + G P + + IT
Sbjct: 3 PPGKPEIFKCRSPNKET---FTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGP 59
Query: 91 TSYQLTGLSPHTTYKSVCQVYLISDKHTQKVD-LTFESDQLYLSGLP-----NSEWPSLR 144
S + V + + D L + + P + P R
Sbjct: 60 NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDR 119
Query: 145 TIILTLYFRTAQVPGVPPYVSD--------KGRDGKYKSIYNGEAQSCRIQDLKPGTDYA 196
L + + + + + +++ + G+ +I L PG Y
Sbjct: 120 KPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYL 179
Query: 197 VCVQVHLEEIVGIASE---PTLFTTP 219
V V+ + G S T P
Sbjct: 180 VQVRCKPDH--GYWSAWSPATFIQIP 203
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 45.8 bits (107), Expect = 1e-05
Identities = 48/330 (14%), Positives = 85/330 (25%), Gaps = 58/330 (17%)
Query: 26 SPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPA------NHGSPILHYVLETS 79
+ + T P P L + ++WS L + +
Sbjct: 97 TRLTVTLTQHVQPPEPRDLQISTDQ----DHFLLTWSVALGSPQSHWLSPGDLEFEVVYK 152
Query: 80 DPAQP-------SITCDTTSYQLTGLSPHTTY------------KSVCQVYLISDKHTQK 120
+ L P +TY + + S +
Sbjct: 153 RLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212
Query: 121 VDLTFESDQLYLSGLPNS--------EWPSLRT--IILTLYFRTAQVPGVPPYVSDKGRD 170
E+ L + E + L+++ + G + ++
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECS 272
Query: 171 GKYKSIYN--GEAQSCRIQ--DLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQP 226
+ C+I D Y V VQ E +S Q
Sbjct: 273 PVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNI----------QM 322
Query: 227 NPPKL-VTKTRTSLALKWNA-AVDNGAHVMHYILESDQGNATGDFKEISKSKNK-NFTLS 283
PP L VTK S +L+W + + ++ + AT + +N + L
Sbjct: 323 APPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALP 382
Query: 284 KLTPSTCFRFRLAAVNQHGKSADATSVAEW 313
L PST + R+ S EW
Sbjct: 383 ALEPSTRYWARVRVRTSRTGYNGIWS--EW 410
Score = 43.1 bits (100), Expect = 8e-05
Identities = 36/301 (11%), Positives = 77/301 (25%), Gaps = 24/301 (7%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSD---PAQPSITCDTT 91
T ++TL + S H P Q + D
Sbjct: 26 TQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVD 85
Query: 92 SYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLYLS-----GLPNSEWPSLRTI 146
+ P T +V + + + ++ + D L+ G P S W S +
Sbjct: 86 YFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDL 145
Query: 147 ILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI 206
+ ++ Q + + N + + L P + Y V+ L
Sbjct: 146 EFEVVYKRLQDSWEDAAIL----------LSNTSQATLGPEHLMPSSTYVARVRTRLAPG 195
Query: 207 VGIASEPTLFTTPPCEPD------QPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILES 260
++ P+ ++ C QP + L+ W + + V +
Sbjct: 196 SRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYK 255
Query: 261 DQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYT 320
+A + + + T ++ + SV +
Sbjct: 256 PSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIK 315
Query: 321 P 321
Sbjct: 316 S 316
Score = 32.7 bits (73), Expect = 0.16
Identities = 36/233 (15%), Positives = 59/233 (25%), Gaps = 45/233 (19%)
Query: 20 GNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETS 79
S S +S + PG + L+ SW S + +
Sbjct: 197 RLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKP 256
Query: 80 DPAQPSITCDTT-----SYQLTGLSPHTTY--------KSVCQVYLISDKHTQK------ 120
P S + S HT + + Y++S + +
Sbjct: 257 SPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKS 316
Query: 121 ----------VDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRD 170
+ +T + D L E +R + F Y D
Sbjct: 317 SVNIQMAPPSLQVTKDGDSYSLR----WETMKMRYEHIDHTFEIQ-------YRKDTATW 365
Query: 171 GKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA-----SEPTLFTT 218
K+ A S + L+P T Y V+V SE + T
Sbjct: 366 KDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT 418
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 41.9 bits (99), Expect = 2e-05
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 36 TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCDTTSYQL 95
P P +L ++ T +S+T+SW+ + + Y + + T T+ +
Sbjct: 2 MAPTAPTNLA---STAQTTSSITLSWTASTD-NVGVTGYDVYNGT--ALATTVTGTTATI 55
Query: 96 TGLSPHTTY 104
+GL+ T+Y
Sbjct: 56 SGLAADTSY 64
Score = 36.5 bits (85), Expect = 0.001
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
P P +T +S+ L W A+ DN V Y + + + T+
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG-VTGYDVYNGT-------ALATTVTGTTATI 55
Query: 283 SKLTPSTCFRFRLAAVNQHG-KSADATSVA 311
S L T + F + A + G SA + +V+
Sbjct: 56 SGLAADTSYTFTVKAKDAAGNVSAASNAVS 85
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 14/82 (17%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANH-----------GSPILHYVLETSDPAQ 83
+ L++ + T +SL ++W P L +
Sbjct: 6 SGSRPRLSQLSV---TDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRE 62
Query: 84 PSITCDTTSYQLTGLSPHTTYK 105
+ S L L T Y
Sbjct: 63 LMVPGTRHSAVLRDLRSGTLYS 84
Score = 31.5 bits (71), Expect = 0.12
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 8/102 (7%)
Query: 218 TPPCEPDQPNPPKLVTK--TRTSLALKWNAAVDNGAHVMHYILESDQGN-----ATGDFK 270
+ +P +L T +SL L W A + +
Sbjct: 2 SSGSSGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 271 EISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVA 311
E+ ++ L L T + L + K+ A
Sbjct: 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 44.0 bits (103), Expect = 3e-05
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 3/120 (2%)
Query: 178 NGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRT 237
C++Q + VQ+ + L P P L + +
Sbjct: 92 EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 151
Query: 238 SLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAA 297
L L WN H + ++++ + + + E S F+L + + FR+ +
Sbjct: 152 QLELNWNN--RFLNHCLEHLVQY-RTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRS 208
Score = 38.3 bits (88), Expect = 0.002
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 21 NSAGWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE 77
+ + + P P +LTL K S + L ++W+ + L ++++
Sbjct: 117 DPREPRRQATQMLKLQNLVIPWAPENLTLHKLS---ESQLELNWNNR--FLNHCLEHLVQ 171
Query: 78 TSDPAQPS----ITCDTTSYQLTGLSPHTTY 104
S + L + Y
Sbjct: 172 YRTDWDHSWTEQSVDYRHKFSLPSVDGQKRY 202
Score = 28.2 bits (62), Expect = 3.6
Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 6/63 (9%)
Query: 167 KGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA------SEPTLFTTPP 220
D + + + Y V+ + G A S P + +
Sbjct: 174 TDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNT 233
Query: 221 CEP 223
+
Sbjct: 234 SKE 236
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 42.8 bits (100), Expect = 4e-05
Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 21/184 (11%)
Query: 55 TSLTVSWSEPANHGSPILHYVLETSDPAQPSITC---DTTSYQLTGLSPHTTYKSVCQVY 111
+ W PA + + + C T + LS + + +V
Sbjct: 15 FKNILQWESPAFAKGQL-TFTAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHT--LRVR 71
Query: 112 LIS-DKHTQKVDLTFESDQLYLSGLPNSE-WPSLRTIILTLYFRTAQVPGVPPYVSDKGR 169
D+H+ V +TF + G P + + + + + +
Sbjct: 72 AEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYN 131
Query: 170 DGKY-----------KSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI--VGIASEPTLF 216
Y K + +++L+P T Y V V+ L + G SEP
Sbjct: 132 SWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE 191
Query: 217 TTPP 220
T
Sbjct: 192 QTTH 195
Score = 33.2 bits (75), Expect = 0.084
Identities = 18/149 (12%), Positives = 33/149 (22%), Gaps = 12/149 (8%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
C L D+ + V+ S+ T P +
Sbjct: 34 TAQYLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFA---DEHSDWVQITFSPVD 90
Query: 223 PDQPNPPKL-VTKTRTSLALKWNAAVDNGAHVMHYILESDQG--------NATGDFKEIS 273
PP + V L +++ A + + D K
Sbjct: 91 DTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQI 150
Query: 274 KSKNKNFTLSKLTPSTCFRFRLAAVNQHG 302
+ L L P T + ++
Sbjct: 151 TPQYDFEVLRNLEPWTTYCVQVRGFLPDR 179
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 42.8 bits (100), Expect = 5e-05
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 11/175 (6%)
Query: 136 PNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDY 195
++ + + Y R++ P + K + + C Q + + Y
Sbjct: 24 TSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEP-KDCYLQSDGFYECIFQPIFLLSGY 82
Query: 196 AVCVQVHLEEIVG-IASEPTLFTTPPCEPDQPNPPKLVTKTRTS----LALKWNAAVDNG 250
+ + + +G + S PT P +P PP V T L + W V
Sbjct: 83 --TMWIRINHSLGSLDSPPTCVL--PDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE 138
Query: 251 AHVMHYILESDQGNATG-DFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKS 304
++ I G E+ +K+K+ +L + ++ G
Sbjct: 139 NNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLG 193
Score = 41.6 bits (97), Expect = 1e-04
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 11/96 (11%)
Query: 18 RAGNSAGWS---PFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHY 74
R +S G P P PP S+ T L +SW +P + +
Sbjct: 87 RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITI--NIGLLKISWEKPVFPENNLQFQ 144
Query: 75 V------LETSDPAQPSITCDTTSYQLTGLSPHTTY 104
+ E + S L Y
Sbjct: 145 IRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVY 180
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 43.3 bits (101), Expect = 5e-05
Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 45/294 (15%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSP--ILHYVLETSDPAQPSITC-DTTSY 93
PP + T+ VT + + W + L Y ++ + P + T S
Sbjct: 11 SLLPPVNFTI---KVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK 67
Query: 94 QLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFR 153
+T L + ++ + H+ ++ G P + +L T
Sbjct: 68 AVTILHMGFSAS---VRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDN 124
Query: 154 TAQVPGVPPYVS---DKGRDGKYKSIY--------------------NGEAQSCRIQDLK 190
+++ + G D + Y G +C
Sbjct: 125 YSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTF 184
Query: 191 PGT----DYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR--TSLALKWN 244
+ AV V + A P DQ NPP VT T ++++W
Sbjct: 185 ILSKGRDWLAVLVNGSSK---HSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQWE 241
Query: 245 AAVD-NGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAA 297
V H Y + + + T + + N +S + + + ++ A
Sbjct: 242 KPVSAFPIHCFDYEV---KIHNTRNGYLQIEKLMTNAFISIIDDLSKYDVQVRA 292
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 42.8 bits (100), Expect = 6e-05
Identities = 25/213 (11%), Positives = 53/213 (24%), Gaps = 34/213 (15%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLET----SDPAQPSITCD- 89
T P + + + + W Y ++ + C
Sbjct: 5 THESLKPQRVQFQSRN----FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWG 60
Query: 90 --TTSYQLT--GLSPHTTYK-------------SVCQVYLISDKHTQ----KVDLTFESD 128
S LT Y T+ +++T +
Sbjct: 61 TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNG 120
Query: 129 QLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQD 188
L + L P + ++ + + + K +Y G ++ I+
Sbjct: 121 SLLVI-LHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK-VYEGAHRAVEIEA 178
Query: 189 LKPGTDYAVCVQVHLEEI--VGIASEPTLFTTP 219
L P + Y V +++ + SE P
Sbjct: 179 LTPHSSYCVVAEIYQPMLDRRSQRSEERCVEIP 211
Score = 30.1 bits (67), Expect = 0.90
Identities = 8/70 (11%), Positives = 18/70 (25%), Gaps = 6/70 (8%)
Query: 241 LKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKN-----KNFTLSKLTPSTCFRFRL 295
L+W + Y ++ + +K + T + R+
Sbjct: 25 LQWQPGRALTGNSSVYFVQY-KIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRV 83
Query: 296 AAVNQHGKSA 305
A + S
Sbjct: 84 RAASAGSYSE 93
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 42.9 bits (100), Expect = 6e-05
Identities = 23/192 (11%), Positives = 46/192 (23%), Gaps = 26/192 (13%)
Query: 55 TSLTVSWSEPANHGSPILHYVLE----TSDPAQPSITC---DTTSYQLT--GLSPHTTYK 105
+ W+ P + Y ++ C + T L+ Y
Sbjct: 22 MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYY 81
Query: 106 SVCQVYLISDKHTQKVDLTFESDQLYLSGLPN----SEWPSLRTIILTLYFRTAQVPGVP 161
+ + + F G P ++ S+ ++ +P
Sbjct: 82 ARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLP 141
Query: 162 PYVSDKGRDGKYKSIY-----------NGEAQSCRIQDLKPGTDYAVCVQVHLEEI--VG 208
+ + KY + + L+P T Y V V+ +
Sbjct: 142 VSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRA 201
Query: 209 IASEPTLFTTPP 220
SE T
Sbjct: 202 QPSEKQCARTLK 213
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 42.5 bits (99), Expect = 7e-05
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 13/100 (13%)
Query: 18 RAGNSAGWSPFSETSVITT---PPGPPGSLTLR---KTSVTTPTSLTVSWSEPANHGSPI 71
+A N G S + + PP L P L +SW
Sbjct: 86 QAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYME 145
Query: 72 LHYVL-------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
L + + ++L GL Y
Sbjct: 146 QECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVY 185
Score = 39.4 bits (91), Expect = 7e-04
Identities = 19/132 (14%), Positives = 31/132 (23%), Gaps = 14/132 (10%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTR------ 236
S ++L A+ VQ + S P + + PP L
Sbjct: 69 SIPRKNLLLYQYMAIWVQAE-NMLGSSESPKLCLD--PMDVVKLEPPMLQALDIGPDVVS 125
Query: 237 ---TSLALKWNAAVDNGAHVMHYILE--SDQGNATGDFKEISKSKNKNFTLSKLTPSTCF 291
L L W + L A S F L L + +
Sbjct: 126 HQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVY 185
Query: 292 RFRLAAVNQHGK 303
++ +
Sbjct: 186 TLQMRCIRSSLP 197
Score = 37.9 bits (87), Expect = 0.002
Identities = 26/214 (12%), Positives = 47/214 (21%), Gaps = 34/214 (15%)
Query: 37 PPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSP---ILHYVLETSDPAQPSITCD---- 89
PP P +L+ T SL W P IL +D T
Sbjct: 4 PPASPSNLSCL--MHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVA 61
Query: 90 -----TTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVD-LTFESDQLY-------LSGLP 136
S L + V + + + L + + +
Sbjct: 62 KKRQNNCSIPRKNLLLYQYM--AIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDI 119
Query: 137 NSEWPSLRTIILTLYFRTAQVPGVPP-------YVSDKGRDGKYKSIYNGEAQSCRIQDL 189
+ S + L L ++ + KG + + L
Sbjct: 120 GPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGL 179
Query: 190 KPGTDYAVCVQVHLEEIVGIASE---PTLFTTPP 220
Y + ++ + G S
Sbjct: 180 HQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 40.9 bits (96), Expect = 7e-05
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 24/96 (25%)
Query: 29 SETSVITT----PPGPPGSLTLRKTSVTTPTSLTVSWSEPA---NHGSPILHYVL----- 76
S S + P PG++ + V T V W G + Y +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVN---VVNSTLAEVHWDPVPLKSIRG-HLQGYRIYYWKT 57
Query: 77 --------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
+ + T L GL P + Y
Sbjct: 58 QSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHY 93
Score = 34.7 bits (80), Expect = 0.013
Identities = 10/26 (38%), Positives = 10/26 (38%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGS 43
R N G P S V TP G S
Sbjct: 98 RVVNGKGEGPASPDRVFNTPEGSGPS 123
Score = 32.0 bits (73), Expect = 0.085
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 177 YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+ G + L+P + Y + V+V + G AS +F TP
Sbjct: 75 FQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPE 118
Score = 28.1 bits (63), Expect = 2.2
Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 23/134 (17%)
Query: 210 ASEPTLFTTPPCEPDQPNPPKLVT---KTRTSLALKWNA---AVDNGAHVMHYIL----- 258
S + + P P V T + W+ G H+ Y +
Sbjct: 1 GSSGSSGHSGEDLPMVA--PGNVRVNVVNSTLAEVHWDPVPLKSIRG-HLQGYRIYYWKT 57
Query: 259 --ESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLS 315
S + + K ++ +K L L P + + + VN G+ +
Sbjct: 58 QSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR----- 112
Query: 316 YSVYTPEVKGSVPG 329
TPE G G
Sbjct: 113 -VFNTPEGSGPSSG 125
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 40.4 bits (94), Expect = 9e-05
Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPI-------LHYVLETSDPAQPSITCDT 90
P PP ++ R + P L V+W P+ P L Y D Q +
Sbjct: 8 PDPPENVVARPVP-SNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNG 66
Query: 91 TSYQLTGLSPHTTYK 105
T++ +T Y
Sbjct: 67 TAHTITDAYAGKEYI 81
Score = 29.2 bits (65), Expect = 0.84
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 169 RDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASE--PTLFTTPPCE 222
+++ + + I D G +Y + V EI G S+ TP E
Sbjct: 54 ILDQWQHVELSNGTAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAHATPWTE 108
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 42.2 bits (98), Expect = 1e-04
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 18 RAGNSAGWS---PFSETSVITTPPGPPGSLTLR---KTSVTTPTSLTVSWSEPANHGSPI 71
+A N+ G S + PP T+ + + L +SW
Sbjct: 180 QAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHIN 239
Query: 72 LHYVL-------ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
L E S + + Y+L GL P T Y
Sbjct: 240 QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAY 279
Score = 39.5 bits (91), Expect = 0.001
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 10/130 (7%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTT-------PPCEPDQPNPPKLVTKT 235
S + L + + VQ + S PP P+
Sbjct: 163 SIPRKHLLLYQNMGIWVQAE-NALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQ 221
Query: 236 RTSLALKWNAAVDNGAHVMHYILE--SDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRF 293
L L W L +G A+ + + L L P+T +
Sbjct: 222 AGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTL 281
Query: 294 RLAAVNQHGK 303
++ +
Sbjct: 282 QIRCIRWPLP 291
Score = 35.3 bits (80), Expect = 0.020
Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 17/238 (7%)
Query: 2 SMVCQSCTDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSW 61
+ C + + D+ AG+ P ++ SL + T L S+
Sbjct: 74 FLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ-WEPGPETHLPTSF 132
Query: 62 SEPANHGSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTY------KSVCQVYLISD 115
+ + ++ P S L + ++ +
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 116 KHTQKVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPP------YVSDKGR 169
+D+ + + P+ E + L L + Q + +G
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252
Query: 170 DG-KYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASE---PTLFTTPPCEP 223
EA + L P T Y + ++ + G S+ T
Sbjct: 253 ASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310
Score = 28.0 bits (61), Expect = 5.4
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 3/28 (10%)
Query: 18 RAGNSAG---WSPFSETSVITTPPGPPG 42
R WS +S + + T
Sbjct: 284 RCIRWPLPGHWSDWSPSLELRTTERAAA 311
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 39.7 bits (92), Expect = 1e-04
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQP-SITCDTTSY 93
++ + + TSLT+ W N S Y + + ++
Sbjct: 5 SSGAIQVFDV---TAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPRA 61
Query: 94 QLTGLSPHTTY 104
+ GL T Y
Sbjct: 62 VIPGLRSSTFY 72
Score = 29.3 bits (65), Expect = 0.55
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 4/86 (4%)
Query: 223 PDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTL 282
Q V + TSL L W + + + Y + A +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHV----AGETDSSNLNVSEPRAVI 63
Query: 283 SKLTPSTCFRFRLAAVNQHGKSADAT 308
L ST + + V +
Sbjct: 64 PGLRSSTFYNITVCPVLGDIEGTPGF 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-04
Identities = 29/256 (11%), Positives = 67/256 (26%), Gaps = 108/256 (42%)
Query: 101 HTTYKSVCQ--VYLISDKHTQKVDLTFESDQLYLSGLPNSEW-------PSLRTIILTLY 151
+ TY + + ++ ++ + T ++++++ GL EW P Y
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD------KDY 230
Query: 152 FRTAQV--PGVPPYVSDKGRDGKYKSIYNGEAQ------SCRIQDLKPGT--DYAVCVQV 201
+ + P + G Q + ++ PG Y
Sbjct: 231 LLSIPISCPLI------------------GVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 202 HLEEIVG---IASEPT--------------LF--------TTPPCEPDQPNPPKLVTKTR 236
H + +V IA + LF P PP ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL----PPSILED-- 326
Query: 237 TSLALKWNAAVDNGAHVMHYILESDQGNATG-DFKEISKSKNKNFTLSKLTPSTCFRFRL 295
+++N V +L + + +++ +
Sbjct: 327 ---------SLENNEGVPSPML-----SISNLTQEQVQD-------------------YV 353
Query: 296 AAVNQHGKSADATSVA 311
N H + ++
Sbjct: 354 NKTNSHLPAGKQVEIS 369
Score = 39.6 bits (92), Expect = 0.001
Identities = 54/340 (15%), Positives = 90/340 (26%), Gaps = 142/340 (41%)
Query: 24 GWS--PFS------ETSV-ITTPPGPPGSLTLRKT---SVTTPTSLTVSWSEPANHGSPI 71
+S P + E + + T S L++ + PT + EP +P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPT---TPA 58
Query: 72 ------LHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTF 125
L YV +P++ + V + L F
Sbjct: 59 ELVGKFLGYVSSLVEPSKVG-----------------QFDQVLNLCLTE----------F 91
Query: 126 ESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSI---YNGEAQ 182
E+ YL G N I L A++ + K K + Y
Sbjct: 92 ENC--YLEG--ND--------IHAL---AAKLLQ-----ENDTTLVKTKELIKNY----- 126
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALK 242
+ +A P D+ + L
Sbjct: 127 ------------ITARI---------MAKRP---------FDKKSNSAL----------- 145
Query: 243 WNAAVDNGAHVMHYILESDQGNATGDFKE------ISKSKNKNF------TLSKLTPSTC 290
+ A + A + + QGN F+E + TLS+L +T
Sbjct: 146 FRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT- 202
Query: 291 FRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVK--GSVP 328
L A + + + EWL TP+ S+P
Sbjct: 203 ----LDAEKVFTQGLN---ILEWLENPSNTPDKDYLLSIP 235
Score = 38.1 bits (88), Expect = 0.005
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 1 MSMVCQSCTDHKVSTEDRAGNSAGWSPFSETSVITTP---PGPPGSLTLRKTSVTTPTSL 57
+M+ ++ D K+ TE F E + +T G L+ T T P
Sbjct: 1689 SAMIFETIVDGKLKTEK---------IFKEINEHSTSYTFRSEKGLLSA--TQFTQPALT 1737
Query: 58 TVS 60
+
Sbjct: 1738 LME 1740
Score = 36.2 bits (83), Expect = 0.017
Identities = 43/200 (21%), Positives = 60/200 (30%), Gaps = 73/200 (36%)
Query: 33 VITTPPGPPGSL-----TLRKTSVTT-------PTS---LTVSW-----SEPANHGSPIL 72
V++ GPP SL TLRK + P S L S + P H S +L
Sbjct: 378 VVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-H-SHLL 432
Query: 73 HYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSV---CQVYLISDKHTQK-VDLTFESD 128
PA I D + ++ + VY T DL S
Sbjct: 433 -------VPASDLINKDLVKNNV-------SFNAKDIQIPVY-----DTFDGSDLRVLSG 473
Query: 129 QLYLS------GLPNSEWPSLRTIILT--LYFRTAQVPGVPPYVSDKGRDGKYKSIYNGE 180
+ LP +W + T L F G+ + +DG G
Sbjct: 474 SISERIVDCIIRLPV-KWETTTQFKATHILDFGPGGASGLGVLTH-RNKDGT------G- 524
Query: 181 AQSCRI-----QDLKPGTDY 195
R+ D+ P DY
Sbjct: 525 ---VRVIVAGTLDINPDDDY 541
Score = 33.5 bits (76), Expect = 0.11
Identities = 27/157 (17%), Positives = 44/157 (28%), Gaps = 36/157 (22%)
Query: 191 PGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPN-PPKLVTKTRTSLALKWNAAVDN 249
P + + Q+ E+ I EPT D+P P +LV
Sbjct: 23 PTASFFIASQLQ-EQFNKILPEPT---EGFAADDEPTTPAELV----------------- 61
Query: 250 GAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFR----LAAVNQHGKSA 305
+ Y+ + + G F ++ F + LAA
Sbjct: 62 -GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE------NCYLEGNDIHALAAKLLQENDT 114
Query: 306 DATSVAEWL-SYSVYTPEVKGSVPGGVKVFAALFECA 341
E + +Y T + P K +ALF
Sbjct: 115 TLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAV 149
Score = 32.3 bits (73), Expect = 0.28
Identities = 11/59 (18%), Positives = 15/59 (25%), Gaps = 28/59 (47%)
Query: 307 ATSVAEWLSYSVYTPEV---KGSVPGGVKVFA--------AL--------FECALSLVR 346
A + E KG +P FA AL E + +V
Sbjct: 1738 LMEKAAF--------EDLKSKGLIPAD-ATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 37.9 bits (87), Expect = 5e-04
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 232 VTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTC 290
S ++WNA +H+ YIL N+ G +KE + + N +T+ L P
Sbjct: 16 TPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVV 73
Query: 291 FRFRLAAVNQHGKS 304
+ +L ++ Q+G
Sbjct: 74 YEGQLISIQQYGHQ 87
Score = 36.7 bits (84), Expect = 0.002
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 37 PPGPPGSLTLRKT-SVTTPTSLTVSWSEPANHGSPILHYVLE------TSDPAQPSITCD 89
P G G + + T + + P S + W+ P S I Y+L + +I
Sbjct: 2 PLGSSGPVEVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWKEATIPGH 59
Query: 90 TTSYQLTGLSPHTTYK 105
SY + GL P Y+
Sbjct: 60 LNSYTIKGLKPGVVYE 75
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 38.3 bits (89), Expect = 5e-04
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 176 IYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPP 220
+S + +LK G Y + V+ + E G+ SE T
Sbjct: 69 AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 32.9 bits (75), Expect = 0.049
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 44 LTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL---ETSDPAQPS-------ITCDTTSY 93
+ L V TPT++ V+W+ I Y + +TS S S
Sbjct: 19 VRLHNPVVLTPTTVQVTWTVDRQPQ-FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSA 77
Query: 94 QLTGLSPHTTY 104
L L TY
Sbjct: 78 VLVNLKKGVTY 88
Score = 32.2 bits (73), Expect = 0.069
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 230 KLVTKTRTSLALKWNAAVDN----GAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKL 285
V T T++ + W G VM+ Q ++ + ++ L L
Sbjct: 23 NPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 286 TPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPE 322
+ ++ + D+ S +V T E
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESK------TVRTTE 113
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 39.3 bits (91), Expect = 9e-04
Identities = 38/229 (16%), Positives = 51/229 (22%), Gaps = 48/229 (20%)
Query: 25 WSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL-------- 76
P E+ P L + L W E A+ G Y
Sbjct: 8 PDPKFESKAALLAARGPEELLCFTERLED---LVCFWEEAASAGVGPGQYSFSYQLEDEP 64
Query: 77 -----ETSDPAQPSITCDTTSYQLTGLSPHTTY----------KSVCQVYLISDKHTQ-- 119
P S S +V I++
Sbjct: 65 WKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDA 124
Query: 120 ----KVDLTFESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKS 175
L ES + L LP E P I + Q G V
Sbjct: 125 PVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGR----- 179
Query: 176 IYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA-----SEPTLFTTP 219
C + +L+ T Y V+ + E SEP TP
Sbjct: 180 ------TECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTP 222
Score = 37.0 bits (85), Expect = 0.005
Identities = 22/146 (15%), Positives = 39/146 (26%), Gaps = 11/146 (7%)
Query: 183 SCRI--QDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQP-NPPKLVTKTRTSL 239
C + D + V + D P + +
Sbjct: 83 WCSLPTADTSSFVPLELRVTAASGAPR---YHRVIHINEVVLLDAPVGLVARLADESGHV 139
Query: 240 ALKWNAAVDNGAH-VMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAA 297
L+W + + Y ++ G G + + + + LS L T + F + A
Sbjct: 140 VLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
Query: 298 VNQHGKSADATSVAEW-LSYSVYTPE 322
S EW S+ TP
Sbjct: 200 RMAEPSFGGFWS--EWSEPVSLLTPS 223
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 39.9 bits (92), Expect = 0.001
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 18 RAGNSAGWSPFSETSVIT--TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYV 75
N G + + +T P P SL + T +T SW P N L
Sbjct: 365 TGRNPLGQAQSAVVINVTERVAPHDPTSLKV---KDINSTVVTFSWYLPGNFTKINLLCQ 421
Query: 76 LE---------TSDPAQPSITCDTTSYQLTGLSPHTTY 104
+E + T + L+P+T Y
Sbjct: 422 IEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAY 459
Score = 39.6 bits (91), Expect = 0.001
Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 39/324 (12%)
Query: 2 SMVCQSCTDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSW 61
S + C H VS R + + +P + +T+V P V
Sbjct: 161 SDLPLQCATHSVSI--RWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVF-PQDKVVL- 216
Query: 62 SEPANHGSPI-LHYVLETSDP-------AQPSITCDTTSYQLTGLSPHTTYKSVCQVYLI 113
GS + + + T +P I + + L+ + S + I
Sbjct: 217 -----AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFI 271
Query: 114 SDKHTQKVDLTFESDQLYLSGLP---NSEWPSLRTIILT--------LYFRTAQVPGVPP 162
+D + Y +P + E L+ II + L +
Sbjct: 272 TDDDVYGTVVFAG----YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFE 327
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCE 222
+S K E +Q + + +G A +
Sbjct: 328 SISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNP--LGQAQSAVVINVTERV 385
Query: 223 P-DQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEIS----KSKN 277
P K+ T + W + + +E + N+ + + + +
Sbjct: 386 APHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDST 445
Query: 278 KNFTLSKLTPSTCFRFRLAAVNQH 301
+ + KL P T + FR+ ++
Sbjct: 446 YHVAVDKLNPYTAYTFRVRCSSKT 469
Score = 33.0 bits (74), Expect = 0.13
Identities = 26/229 (11%), Positives = 48/229 (20%), Gaps = 41/229 (17%)
Query: 21 NSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPAN---HGSPILHYVLE 77
+ PP P L+ + SW+ G Y L
Sbjct: 270 FITDDDVYGTVVFAGYPPDVPQKLSCE---THDLKEIICSWNPGRITGLVGPRNTEYTLF 326
Query: 78 TSDPA-------QPSITCDTTSYQLTGLSPHTTYKSVCQVY--LISDKHTQKVDLTF--- 125
S +T +T + + L + +++T
Sbjct: 327 ESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVA 386
Query: 126 ------------ESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKY 173
S + S + + + + V D Y
Sbjct: 387 PHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTY 446
Query: 174 KSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA--SEPTLFTTPP 220
+ L P T Y V+ + + S+ T
Sbjct: 447 ---------HVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTTE 486
Score = 33.0 bits (74), Expect = 0.14
Identities = 55/353 (15%), Positives = 101/353 (28%), Gaps = 44/353 (12%)
Query: 7 SCTDHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPAN 66
S DH+V+ G + ++ + ++ P P L L ++ +SL + W++ +
Sbjct: 61 SPGDHEVTINYLNGFQSKFTLNEKD--VSLIPETPEILDL--SADFFTSSLLLKWNDRGS 116
Query: 67 ---HGSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDL 123
H S + +P + + L+G + + L H+ +
Sbjct: 117 ALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSI-- 174
Query: 124 TFESDQLYLSGLPN-SEWPSLRTIILTLYFRTAQVPGVP-----------------PYVS 165
+ D + SG S+W L+ I T P
Sbjct: 175 RWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSG 234
Query: 166 DKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQ 225
G + G+ + I ++ + + + +F P PD
Sbjct: 235 QIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITD---DDVYGTVVFAGYP--PDV 289
Query: 226 PNPPKLVTKTRTSLALKWNAAVD---NGAHVMHYILESDQGNATGDFKEISKSKNKNF-- 280
P T + WN G Y L + F I N+ +
Sbjct: 290 PQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRL 349
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEVKGSVPGGVKV 333
+ F L N G++ A + T V P +KV
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLGQAQSAVVI-------NVTERVAPHDPTSLKV 395
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 38.3 bits (88), Expect = 0.002
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 18 RAGNSAGWS-PFSETSVITTPPGPPGSLTLRKTSVT-TPTSLTVSWSEPAN----HGSPI 71
+ FS ++ P + TL S+T + V W P N G +
Sbjct: 112 TSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMV 171
Query: 72 LHYVL----ETSDPAQPSITCDTTSYQLTGLSPHTTY 104
L Y L + TTS + L Y
Sbjct: 172 LEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEY 208
Score = 30.9 bits (69), Expect = 0.42
Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 15/150 (10%)
Query: 183 SCRIQ--DLKPGTDYAVCVQV--HLEEIVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTS 238
SC Y + + + + + + PP + +T
Sbjct: 93 SCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHAD 152
Query: 239 LALKW----NAAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFR 294
+ ++W NA + G V+ Y L+ + N T +K + + + L + R
Sbjct: 153 IQVRWEAPRNADIQKGWMVLEYELQYKEVNET-KWKMMDPILTTSVPVYSLKVDKEYEVR 211
Query: 295 LAAVNQHGKSADATSVAEW-LSYSVYTPEV 323
+ + K ++ + E+ V P++
Sbjct: 212 VRS-----KQRNSGNYGEFSEVLYVTLPQM 236
Score = 27.9 bits (61), Expect = 5.2
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 170 DGKYKSIYNGEAQSCRIQDLKPGTDYAVCV--QVHLEEIVGIASEPTLFTTP 219
+ K+K + S + LK +Y V V + G SE T P
Sbjct: 183 ETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLP 234
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 38.3 bits (88), Expect = 0.003
Identities = 33/227 (14%), Positives = 64/227 (28%), Gaps = 44/227 (19%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSP---ILHYVLETSDPAQ------------P 84
PP L + +++ W + +L + PA+
Sbjct: 94 PPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQ 153
Query: 85 SITC-------DTTSYQLT---------GLSPHTTYKSVCQVYLISDKHTQKVDLTFESD 128
+C D++ Y ++ S T++ + + +
Sbjct: 154 KFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPR 213
Query: 129 QLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQD 188
L ++ W S L F Y +++ + + + + C I D
Sbjct: 214 WLSVTWQDPHSWNSS---FYRLRFELR-------YRAERSKTFTTWMVKDLQH-HCVIHD 262
Query: 189 LKPGTDYAVCVQVHLEEIVGIASE--PTLFTTPPCEPDQPNPPKLVT 233
G + V ++ E G SE P TP E P V+
Sbjct: 263 AWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVS 309
Score = 34.8 bits (79), Expect = 0.033
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 183 SCRIQ-DLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPP-----KLVTKTR 236
SC++ + Y V + V + S+ F C QP+PP V +
Sbjct: 156 SCQLAVPEGDSSFYIVSMCVA-SSVGSKFSKTQTFQ--GCGILQPDPPANITVTAVARNP 212
Query: 237 TSLALKWN--AAVDNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFR 294
L++ W + ++ + + + L + + K + + +
Sbjct: 213 RWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQ 272
Query: 295 LAAVNQHGKS 304
L A + G+
Sbjct: 273 LRAQEEFGQG 282
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 35.8 bits (83), Expect = 0.003
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 34 ITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLE-----TSDPAQPSITC 88
+ + P P L+ ++ + ++W+ Y ++ +
Sbjct: 1 MVSAPAFPTGLSA--VLDSSGNTANLTWNAAPG----ANSYNVKRSTKSGGPYTTIATNI 54
Query: 89 DTTSYQLTGLSPHTTY 104
+T+Y TG++ T Y
Sbjct: 55 TSTNYTDTGVATGTKY 70
Score = 31.6 bits (72), Expect = 0.080
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 226 PNPPKLVTKTR----TSLALKWNAAVDNGAHVMHYILESDQGNATGDFKEI-SKSKNKNF 280
P P ++ + L WNAA Y ++ + G + I + + N+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAAPG----ANSYNVKRS-TKSGGPYTTIATNITSTNY 59
Query: 281 TLSKLTPSTCFRFRLAAVNQHGKSADATSVAEWLSYSVYTPEV 323
T + + T + + ++AV+ ++ ++ + P++
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNSAEA------ILQYPKL 96
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 34.7 bits (79), Expect = 0.024
Identities = 20/194 (10%), Positives = 48/194 (24%), Gaps = 23/194 (11%)
Query: 53 TPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCDTTSYQLTGLSPHTTYK-SVCQVY 111
P++LT++W + + T + + +
Sbjct: 24 HPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSVQITDQS 83
Query: 112 LISDKHTQKVDLT-------------FESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVP 158
+ L S Q +S + E P+ + L + ++
Sbjct: 84 GQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGKLQY---ELQ 140
Query: 159 GVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA------SE 212
+ + + S + + + Y + V+ S+
Sbjct: 141 YRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSD 200
Query: 213 PTLFTTPPCEPDQP 226
P +F T E +
Sbjct: 201 PVIFQTQSEELKEH 214
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 34.7 bits (79), Expect = 0.029
Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 19/196 (9%)
Query: 40 PPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYV--------LETSDPAQPSITCDTT 91
P L++ T+ + WS G + + V L TS PS C T
Sbjct: 9 APQQLSVLSTN----MKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLT 64
Query: 92 SYQLTGLSPHTTYKSVCQVYLISDKHTQK----VDLTFESDQLYLSGLPNSEW-PSLRTI 146
++ T + + + +Q + + Q + P E +
Sbjct: 65 EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL 124
Query: 147 ILTLYFRTAQVPGVPPYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI 206
++ L Q + Y + ++ + ++ ++PG Y V Q ++ I
Sbjct: 125 VIELEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAI 184
Query: 207 --VGIASEPTLFTTPP 220
S+
Sbjct: 185 GRYSAFSQTECVEVQG 200
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 34.0 bits (77), Expect = 0.050
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 177 YNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIA----SEPTLFTTPPCEPDQ 225
+ + ++ L P T Y V+V + S+P F T P +
Sbjct: 160 LKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGK 212
Score = 32.5 bits (73), Expect = 0.13
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 12/95 (12%)
Query: 19 AGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEP--ANHGSPILHYVL 76
+ P SL + +SW +++ L +
Sbjct: 87 GVRWRVMAIQDFKPFENLRLMAPISLQVVHVE---THRCNISWEISQASHYFERHLEFEA 143
Query: 77 ETSDPAQP-------SITCDTTSYQLTGLSPHTTY 104
T P ++ L L+P T Y
Sbjct: 144 RTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQY 178
Score = 29.4 bits (65), Expect = 1.3
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 220 PCEPDQPNPPKLVTKTRTS---LALKWNAAVDNGAHVMHYILE-----SDQGNATGDFKE 271
P E + P + + W + +H LE G+ +
Sbjct: 100 PFENLRLMAPISLQVVHVETHRCNISWE--ISQASHYFERHLEFEARTLSPGHTWEEAPL 157
Query: 272 ISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
++ + + L LTP T + F++ G+
Sbjct: 158 LTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
Score = 27.4 bits (60), Expect = 5.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 12 KVSTEDRAGNSAGWSPFSETSVITTPPGPPG 42
+V + G WSP+S+ T P G
Sbjct: 181 QVRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix,
dynamic fluctuations, conformational exchange, chaps,
cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 89
Score = 30.9 bits (69), Expect = 0.16
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 251 AHVMHYILESDQGNATGDFKEISKSKNKN-FTLSKLTPSTCFRFRLAAVNQHGKS 304
+H+ YIL N+ G +KE + + N +T+ L P + +L ++ Q+G
Sbjct: 10 SHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQ 64
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 32.3 bits (73), Expect = 0.16
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 183 SCRIQDLKPGTDYAVCVQVHLEEIVGIASEPTLFTTPPCEPDQPNPPKLVT---KTRTSL 239
C + + + + + + + P E +P P +T +L
Sbjct: 60 VCHLLMDDVVSADNYTLDLWAGQQLLWKG-----SFKPSEHVKPRAPGNLTVHTNVSDTL 114
Query: 240 ALKWNAAVDNGAHVMH---YILESDQGNATGDFKEIS---KSKNKNFTLSKLTPSTCFRF 293
L W+ ++ + Y + N DF+ + + S L +R
Sbjct: 115 LLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRA 174
Query: 294 RLAAVNQHGKS 304
R+ A Q +
Sbjct: 175 RVRAWAQAYNT 185
Score = 30.0 bits (67), Expect = 0.83
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 186 IQDLKPGTDYAVCVQVHLEEIVGIASE---PTLFTTPPCEP 223
LK G Y V+ + SE T + EP
Sbjct: 163 ASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.21
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 15/35 (42%)
Query: 315 SYSVYTPEVKGSVPGGVKVFAALFECALSLVRTIE 349
S +Y + S P AL++ T+E
Sbjct: 28 SLKLYADD---SAP------------ALAIKATME 47
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 30.9 bits (69), Expect = 0.50
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 125 FESDQLYLSGLPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIY 177
+ P ++ PS R L + F T Q V V G Y ++
Sbjct: 16 SKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELH 68
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 31.1 bits (70), Expect = 0.63
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 206 IVGIASEPTLFTTPPCEPDQPNPPKLVTKTRTSLALKWNAAVDNGAHVMHYILESDQ--G 263
+VG ++ P Q P L +S+ L W A D V + I + + G
Sbjct: 21 MVGTPMAMAAKSSSLDAPQQLQVPTLAY-DESSIVLVWKAPEDTRKIVDYQIFSAGKLLG 79
Query: 264 NATGDFKEISKSKN-------------------KNFTLSKLTPSTCFRFRLAAVNQHGKS 304
A+ + S +K +NFT+ L P T ++F + A G
Sbjct: 80 KASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSL 139
Query: 305 ADATSVA 311
+ A+
Sbjct: 140 SVASKPI 146
Score = 30.4 bits (68), Expect = 1.1
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 162 PYVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQ-VHLEEIVGIASEPTLFTTPP 220
PY+ + K + Q+ + LKP T Y V+ + + + +AS+P T
Sbjct: 93 PYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAKTSA 152
Score = 27.3 bits (60), Expect = 9.3
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 35 TTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL--------------ETSD 80
++ P L + + +S+ + W P + I+ Y + +
Sbjct: 32 SSSLDAPQQLQVPTLAYD-ESSIVLVWKAPEDTRK-IVDYQIFSAGKLLGKASDNNDNFS 89
Query: 81 PAQPSI-------------TCDTTSYQLTGLSPHTTYK 105
PA+P I ++ + GL P T+Y+
Sbjct: 90 PAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQ 127
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 28.3 bits (62), Expect = 1.9
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 32 SVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPSITCDTT 91
S ++ PG P ++ + K + +SW P + IL Y +
Sbjct: 2 SSGSSGPGAPSTVRISKN----VDGIHLSWEPPTSPSGNILEYSAYLAIRTAQM---QDN 54
Query: 92 SYQLTGLSPHTTYKSVCQV 110
QL + + K+ C V
Sbjct: 55 PSQLVFMRIYCGLKTSCTV 73
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 28.6 bits (63), Expect = 2.6
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 38 PGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVL------ETSDPAQPSITCDTT 91
P P L++ +T + S +L + + + + +++
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 92 SYQLTGLSPHTTY 104
+ L P Y
Sbjct: 173 TLLQRKLQPAAMY 185
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 28.4 bits (62), Expect = 2.8
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 10 DHKVSTEDRAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANH-G 68
++ GN A G T + TPTSL +SW
Sbjct: 73 TVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVS 132
Query: 69 SPILHYVLETSDPAQPSITC--DTTSYQLTGLSPHTTY 104
+ Y + T +++ ++GL P Y
Sbjct: 133 YYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDY 170
Score = 26.8 bits (58), Expect = 9.5
Identities = 11/51 (21%), Positives = 17/51 (33%)
Query: 163 YVSDKGRDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEIVGIASEP 213
Y G + + + I LKPG DY + V + + P
Sbjct: 138 YGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSDYYGSHHYSP 188
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 28.1 bits (62), Expect = 3.9
Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 169 RDGKYKSIYNGEAQSCRIQDLKPGTDYAVCVQVHLEEI--VGIASEPTLFTTP 219
+ Y+ G+ + L P T++ + + + + T P
Sbjct: 154 VNRTYQMHLGGKQREYEFFGLTPDTEFLGTIMILVPTWAKESAPYMCRVKTLP 206
Score = 27.4 bits (60), Expect = 6.0
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 24/106 (22%)
Query: 18 RAGNSAGWSPFSETSVIT----TPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGS---- 69
A ++ G S T + T PP +T S+ +
Sbjct: 80 TAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCISKV----RSIQMIVHPTPTPIRAGDG 134
Query: 70 ---------PILHYVLE--TSDPAQPSITCDTTSYQLTGLSPHTTY 104
L Y LE + Q + Y+ GL+P T +
Sbjct: 135 HRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEF 180
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 27.9 bits (62), Expect = 4.0
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 135 LPNSEWPSLRTIILTLYFRTAQVPGVPPYVSDKGRDGKYKSIY 177
P ++ PS R L + F T Q V V G Y ++
Sbjct: 20 WPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELH 62
>2vse_A MTX holotoxin, mosquitocidal toxin; ADP-ribosyltransferase, lectin,
ricin-B-like domain; 2.5A {Lysinibacillus sphaericus}
PDB: 2vsa_A
Length = 841
Score = 28.4 bits (62), Expect = 4.5
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 18 RAGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVTTPTSL-TVSWSE--PANHGSPILHY 74
R + ++ P V+ P+++ V W E + +
Sbjct: 176 RPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEGNNMDSKGF 235
Query: 75 VLETSDPAQPSIT-CDTTSYQLTGLSPHTTYKSVCQVYLISDKHTQKVDLTFES 127
+L+ + + L+ ++ Y I +K + + +T +S
Sbjct: 236 ILDLDYNQDFDMFAPNGEIPNNNLLNNNSLNVIQNSEYQIKNKKDRNIVVTLDS 289
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 27.6 bits (61), Expect = 4.8
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 21 NSAGWSPFSETS--VITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLET 78
+ S S+ VI P +V ++T+S S +++ L E
Sbjct: 87 SPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEA 146
Query: 79 SDPAQPSITCDTTSYQLT 96
+ P+ ++Q
Sbjct: 147 HERRLPAGPKVNGTFQAD 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 5.1
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 248 DNGAHVMHYILESDQGNATGDFKEISKSKNKNFTLSKLTPSTCFRFRLAAVNQHGKSADA 307
+G + + L S Q F E N F +S + Q S
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-----------KTEQRQPSMMT 109
Query: 308 TSVAEWLS--YSVYTPEVKGSVPGGVKVFAALFECALSL 344
E Y+ K +V ++ + L + L L
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQALLEL 147
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.8 bits (61), Expect = 7.0
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 19 AGNSAGWSPFSETSVITTPPGPPGSLTLRKTSVT-TPTSLTVSWSEPANHGSPILHYVLE 77
+ S +SP S + T+P P S + TS + +PTS + S + P+ + Y
Sbjct: 1592 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPT 1650
Query: 78 TSDPAQPSITCDTTSYQLTGLSPHTTYKS 106
+ + S TS + SP + S
Sbjct: 1651 SPSYSPTSPAYSPTSPSYSPTSPSYSPTS 1679
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 27.5 bits (60), Expect = 7.2
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 32 SVITTPPGPPGSLTLRKTSVTTPTSLTVSWSEPANHGSPILHYVLETSDPAQPS----IT 87
++ P TL + + L WS + + Y TS+P +
Sbjct: 10 ALTLAAPSFAAQTTLMLSQKSDVNYL--GWSTDESKVARQEVYRGTTSNPDLRERIAVLD 67
Query: 88 CDTTSYQLTGLSPHTTY 104
+T +++ + Y
Sbjct: 68 AETRTFKDADTNSGLNY 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.390
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,096,098
Number of extensions: 287287
Number of successful extensions: 1509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 535
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.7 bits)