BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7019
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
S +S D VYQG+ C V+ L TY F + A N G GP+SE TT
Sbjct: 45 SVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 101
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 38 KVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC 72
K +LQ T Y+F + N G+GP+SE F TC
Sbjct: 49 KKQELQPGTAYKFRVAGINACGRGPFSEISAFKTC 83
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 30 YQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC 72
Y G + + V L+ T Y+F + A N G+ SE FTTC
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTC 101
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC----TAPPA---- 77
K V G +N L+ TTY + A N GQG YS+ F T +PP+
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQ 302
Query: 78 PLKGKTY 84
P GK++
Sbjct: 303 PSSGKSF 309
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
G + ++ +L T Y F I A N G GP SEA F T A
Sbjct: 163 GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 205
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
G + ++ +L T Y F I A N G GP SEA F T A
Sbjct: 76 GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 118
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPL 79
+K +V N + L+E YR+ + A N AG GP EA T P P+
Sbjct: 150 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI-INLATQPKRPM 203
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 31 QGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC 72
G +N L+ TTY + A N GQG YS+ F T
Sbjct: 70 HGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 111
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPL 79
+K +V N + L+E YR+ + A N AG GP EA T P P+
Sbjct: 149 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI-INLATQPKRPM 202
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPL 79
+K +V N + L+E YR+ + A N AG GP EA T P P+
Sbjct: 150 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI-INLATQPKRPM 203
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii Domain
From Human Fibronectin Type Iii Domain Containing
Protein 3
Length = 106
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPA 77
+ + Y G S ++ L TTY + A + G GP+SE C PP+
Sbjct: 49 EGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSE---VVACVTPPS 100
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
K V G +N L+ TTY + A N GQG YS+ F T
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA 66
+K +V N + L+E YR+ + A N AG GP EA
Sbjct: 146 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA 187
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 12 FKASHSLSDRPDDRKHVV--YQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYS 64
+ ++ D D +HVV + S + L++ T YR ++ A D G GP S
Sbjct: 54 YSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPES 108
>pdb|3QNA|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
pdb|3QNA|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
pdb|3QNA|C Chain C, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
pdb|3QNA|D Chain D, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
pdb|3QNA|E Chain E, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
pdb|3QNA|F Chain F, Crystal Structure Of A 6-Pyruvoyltetrahydropterin
Synthase Homologue From Esherichia Coli Complexed
Sepiapterin
Length = 141
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 1 MIKTTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYI 52
M+ TT F +F+A+H L P+ K G +F ++ E+ + +I
Sbjct: 21 MMSTTLFKDFTFEAAHRLPHVPEGHKAGRLHGHSFMVRLEITGEVDPHTGWI 72
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPLKGKTYFSLVLSRGVCL 95
S KV++LQE +Y F + A N+ G G +E + P P GK V V L
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLP-PGKITLMDVTRNSVSL 121
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
D + V + FS ++ L TTY + A GQG S+ + F T
Sbjct: 480 DSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 18 LSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
L D + VY G C V+ L +TY + A N G PYS+ T
Sbjct: 48 LDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQT 101
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
D + V + FS ++ L TTY + A GQG S+ + F T
Sbjct: 480 DSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 528
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
D + V + FS ++ L TTY + A GQG S+ + F T
Sbjct: 483 DSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 12 FKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
+K + + R D + GT S + L T Y F + A G GP ++
Sbjct: 54 YKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATD 107
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 13 KASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
++S + R ++K + +QG+ + L+ + Y + N G+GP S F T
Sbjct: 58 QSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 2 IKTTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQG 61
I E+N+ + + +H L + +V L LTTY + A GQG
Sbjct: 53 ISWEEYNRTNTRVTHYLPN------------VTLEYRVTGLTALTTYTIEVAAMTSKGQG 100
Query: 62 PYSEAYPFTTCTAPPAPLKG 81
S A ++ P P G
Sbjct: 101 QVS-ASTISSGVPPSGPSSG 119
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 39 VNKLQELTTYRFYITATNDAGQGPYSEA 66
+ L + Y F + A N G+GP SEA
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEA 92
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 30 YQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT--CTAP 75
Y G+ K+ KL +F ++A ND G +SE + T C+ P
Sbjct: 68 YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGP 115
>pdb|1WK0|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Derived
From Human Kiaa0970 Protein
Length = 137
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
D + VY G + +N L+ Y + A ++ +G SEA FTT + P
Sbjct: 70 DGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,770,133
Number of Sequences: 62578
Number of extensions: 137824
Number of successful extensions: 240
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 34
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)