RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7019
(128 letters)
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including
extracellular and intracellular proteins, membrane
spanning cytokine receptors, growth hormone receptors,
tyrosine phosphatase receptors, and adhesion molecules.
FN3-like domains are also found in bacterial glycosyl
hydrolases.
Length = 93
Score = 42.9 bits (101), Expect = 2e-06
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
D ++ V G+ S + L+ T Y F + A N G+ P SE+ TT
Sbjct: 42 GSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 33.2 bits (76), Expect = 0.007
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 15 SHSLSDRPDDRKHVVYQGTN--------------FSCKVNKLQELTTYRFYITATNDAGQ 60
S + P V Y+ N S + L+ T Y + A N AG+
Sbjct: 21 SPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTEYEVRVQAVNGAGE 80
Query: 61 GPYS 64
GP S
Sbjct: 81 GPPS 84
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types
of internal repeat within the plasma protein,
fibronectin. The tenth fibronectin type III repeat
contains a RGD cell recognition sequence in a flexible
loop between 2 strands. Type III modules are present in
both extracellular and intracellular proteins.
Length = 83
Score = 32.6 bits (74), Expect = 0.010
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQG 61
+ + K V ++ S + L+ T Y F + A N AG+G
Sbjct: 41 REEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
>gnl|CDD|151922 pfam11485, DUF3211, Protein of unknown function (DUF3211). This
archaeal family of proteins has no known function.
Length = 136
Score = 28.4 bits (64), Expect = 0.68
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 2 IKTTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQG 61
IK+ + SF+A +G + TY FY++ G G
Sbjct: 34 IKSVDVEGNSFRAEGRFGAFS-----FEIKGRVYVSNNE-----VTYIFYVSGGGPNGNG 83
>gnl|CDD|182098 PRK09828, PRK09828, putative fimbrial outer membrane usher protein;
Provisional.
Length = 865
Score = 28.2 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 5 TEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITA 54
T +F +HS ++ PDD+ YQG ++ NKL E T+ F + A
Sbjct: 417 TSVGAFAFDVTHSNAEIPDDKT---YQGQSYRLTWNKLFEATSTSFNVAA 463
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 27.4 bits (61), Expect = 2.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 5 TEFNQASFKASHSLSDRPDDRKHVVYQGTNF 35
+EF A+++ HSL DR Q
Sbjct: 161 SEFFTAAYRFGHSLVPEGVDRIDENGQPKEI 191
>gnl|CDD|216843 pfam02010, REJ, REJ domain. The REJ (Receptor for Egg Jelly)
domain is found in PKD1, and the sperm receptor for egg
jelly. The function of this domain is unknown. The
domain is 600 amino acids long so is probably composed
of multiple structural domains. There are six completely
conserved cysteine residues that may form disulphide
bridges. This region contains tandem PKD-like domains.
Length = 436
Score = 27.4 bits (61), Expect = 2.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT-------TCTAPP 76
G N + L+ YRF +T T+ +G G Y+ T TC+ P
Sbjct: 256 GPNLVIRAGVLEPGVEYRFSLTVTDTSGSGGYASISFTTNAPPTGGTCSVSP 307
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family
of eukaryotic proteins with undetermined function.
Length = 321
Score = 27.0 bits (60), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 29 VYQGTNFSCKVNKLQE---LTT--YRFYITATN 56
+Y+GT F+ + K+ L T +RFYI T
Sbjct: 50 IYKGTKFNARKEKVGNETYLGTPIFRFYIKCTK 82
>gnl|CDD|151780 pfam11339, DUF3141, Protein of unknown function (DUF3141). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 581
Score = 26.4 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 92 GVCLRAGFLWVFASGRAFCVSARSPCPGQTLSS 124
GV LRAG F F P PGQTL
Sbjct: 94 GVALRAGHPCYFVG---F---LPDPEPGQTLED 120
>gnl|CDD|163257 TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A
number of bacteria degrade urea as a nitrogen source by
the urea carboxylase/allophanate hydrolase pathway,
which uses biotin and consumes ATP, rather than my means
of the nickel-dependent enzyme urease. This model
represents one of a pair of homologous, tandem
uncharacterized genes found together with the urea
carboxylase and allophanate hydrolase genes.
Length = 233
Score = 25.3 bits (56), Expect = 9.3
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 79 LKGKTYFSLVLSRGVCLRAGFLWVFASGRAFCVSA---RSPCPGQTLSSTDTV 128
+ G Y+S VL RG LR L G A VS + P + + DT+
Sbjct: 7 VPGGGYWSKVLRRGTRLRLTDL----EGGA-NVSLLLYNADAPLERYNMADTL 54
>gnl|CDD|233569 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
receptors. This family of TonB-dependent receptors are
responsible for import of iron from the mammalian iron
carriers lactoferrin and transferrin across the outer
membrane. These receptors are found only in bacteria
which can infect mammals such as Moraxella, Mannheimia,
Neisseria, Actinobacillus, Pasteurella, Haemophilus and
Histophilus species [Transport and binding proteins,
Cations and iron carrying compounds, Transport and
binding proteins, Porins].
Length = 932
Score = 25.5 bits (56), Expect = 9.5
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 9 QASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYP 68
+ S R D R+ Q YR YSE
Sbjct: 515 LLGYDKFKSQLSRHDYRRQNAVGTYESIRGDEPKQNPYKYRLGKATIVKNSLCRYSETNG 574
Query: 69 FTTCTAPPAPLKGKTYF 85
+ C P +KG ++
Sbjct: 575 YANCCE-PRKIKGSNHY 590
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.410
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,029,467
Number of extensions: 483812
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 13
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)