RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7019
(128 letters)
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 55.1 bits (133), Expect = 4e-11
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
++Y G ++L YR + +D GQ SE+ T
Sbjct: 68 MIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGPS 118
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 54.6 bits (131), Expect = 8e-11
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
D V+Y G V L+ T Y+F + T+ +G+ YS T T P
Sbjct: 59 EDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT-TRESGP 117
Query: 79 LKG 81
G
Sbjct: 118 SSG 120
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 53.6 bits (129), Expect = 2e-10
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPA 77
+ + Y G+ K+ KL +F ++A ND G +SE +T+ + P+
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPS 116
Query: 78 P 78
Sbjct: 117 S 117
Score = 24.7 bits (54), Expect = 7.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 59 GQGPYSEAYPFTTCTAPPAP 78
G S A FTT + P
Sbjct: 1 GSSGSSGAEIFTTLSCEPDI 20
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 52.7 bits (127), Expect = 2e-10
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT-CTAPPA 77
+ + Y G S ++ L TTY + A + G GP+SE T ++ P+
Sbjct: 46 GGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSGPS 104
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 52.5 bits (126), Expect = 4e-10
Identities = 16/58 (27%), Positives = 21/58 (36%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
D + VY G C V+ L +TY + A N G PYS+ T
Sbjct: 49 DDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 53.1 bits (128), Expect = 8e-10
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP-----LKGK 82
V S KV++LQE +Y F + A N+ G G +E + P P L
Sbjct: 55 VATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDV 114
Query: 83 TYFSLVLS 90
T S+ LS
Sbjct: 115 TRNSVSLS 122
Score = 45.4 bits (108), Expect = 6e-07
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC 72
+ D+ + L + Y F ++A N+ G +
Sbjct: 142 QTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 51.9 bits (124), Expect = 1e-09
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 18 LSDRPDDRKH-VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
+S D K+ VY G + +N L+ Y + A ++ +G SEA FTT + P
Sbjct: 64 ISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Query: 77 AP 78
Sbjct: 124 DI 125
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 50.8 bits (122), Expect = 1e-09
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 27 HVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
Y G + + V L+ T Y+F + A N G+ SE FTTC
Sbjct: 56 KPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPS 107
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 50.4 bits (121), Expect = 2e-09
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 29 VYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
VYQG+ C V+ L TY F + A N G GP+SE TAP +
Sbjct: 59 VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSE--KCDITTAPGSG 106
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 50.6 bits (121), Expect = 7e-09
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ D G + ++ +L T Y F I A N G GP SEA F T A
Sbjct: 150 NAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAHHHH 209
Score = 50.2 bits (120), Expect = 9e-09
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC----TA 74
++ P + K+ T S V L+ T Y F + T +S TT T+
Sbjct: 48 TNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTS 107
Query: 75 PPAPLK 80
PP +
Sbjct: 108 PPKDVT 113
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 49.0 bits (117), Expect = 8e-09
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
S +R + R +V L LTTY + A GQG S +
Sbjct: 54 SWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSA--STISSGV 111
Query: 75 PPAP 78
PP+
Sbjct: 112 PPSG 115
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 50.9 bits (121), Expect = 1e-08
Identities = 17/60 (28%), Positives = 21/60 (35%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
D + V G L TTY F I A+ G GP + T +AP P
Sbjct: 510 IDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMP 569
Score = 41.7 bits (97), Expect = 2e-05
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 21 RPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATN--DAGQGPYSEAYPFTTCTAPPAP 78
+ + S K+ L T Y + T + G G A T A P
Sbjct: 302 TASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMR 361
Score = 39.8 bits (92), Expect = 9e-05
Identities = 8/68 (11%), Positives = 18/68 (26%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ ++ + + ++ + L T + N G+ E T
Sbjct: 398 HYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQT 457
Query: 71 TCTAPPAP 78
P A
Sbjct: 458 DEDLPGAV 465
Score = 39.0 bits (90), Expect = 2e-04
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 42 LQELTTYRFYITATNDAGQGPYSE-AYPFTTCTAPPAP 78
L +YR Y A + A + T A P P
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKP 709
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 48.5 bits (116), Expect = 1e-08
Identities = 16/60 (26%), Positives = 21/60 (35%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ DD G + ++ L T Y F I A N G GP S+ F T
Sbjct: 53 NIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPS 112
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 47.9 bits (114), Expect = 2e-08
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
D+ D QG + LQ Y ITA N G + Y F+ P
Sbjct: 48 KDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTV-YEFSMPPKPNII 106
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 48.2 bits (115), Expect = 3e-08
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 16 HSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAP 75
+ + V + L+ + Y F ITA G G +EA TT
Sbjct: 66 RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT-EKR 124
Query: 76 PAP 78
P
Sbjct: 125 SGP 127
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 47.9 bits (114), Expect = 3e-08
Identities = 12/57 (21%), Positives = 18/57 (31%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
K+ T+ S L+ T Y F + T + +S TT A
Sbjct: 65 SASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGPS 121
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 49.4 bits (117), Expect = 3e-08
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
+ D + V + FS ++ L TTY + A GQG S+ + F T +
Sbjct: 479 RKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534
Score = 47.5 bits (112), Expect = 2e-07
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + T S V+ L+ Y F + A N S ++ + +
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE 443
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 47.1 bits (112), Expect = 3e-08
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
P + K+ T S V L+ T Y F + T +S TT
Sbjct: 55 PANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPS 111
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 47.3 bits (113), Expect = 4e-08
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + + + V+ L+ T Y F + A AG G +S+A T P P
Sbjct: 54 EMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET-GKPSGP 108
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 47.1 bits (112), Expect = 4e-08
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT-CTAPPA 77
SD D K + +G + ++ LQ T+Y + N+ G+ +S T + P+
Sbjct: 53 SDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
Query: 78 P 78
Sbjct: 113 S 113
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 47.0 bits (112), Expect = 5e-08
Identities = 10/58 (17%), Positives = 15/58 (25%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
+ + + + L TY + A G GP S T T
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 47.4 bits (113), Expect = 5e-08
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC-TAPPA 77
+ R D + GT S + L T Y F + A G GP ++ T +
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Query: 78 P 78
Sbjct: 121 T 121
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 48.2 bits (115), Expect = 7e-08
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+K +V N + L+E YR+ + A N AG GP EA T P P
Sbjct: 150 KKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLA-TQPKRP 202
Score = 47.5 bits (113), Expect = 1e-07
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + + S ++ L Y + A G+GPYS T P+
Sbjct: 46 SESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE 101
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 46.6 bits (111), Expect = 7e-08
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
+ D+ + V +S ++ L T Y + A N AG GP S+ T A
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Query: 77 AP 78
Sbjct: 116 PS 117
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 47.5 bits (113), Expect = 9e-08
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT--CTAPPAP 78
+ L+ TTY + A N G G S A F T P AP
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAP 113
Score = 46.0 bits (109), Expect = 3e-07
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
+ + + + + L Y Y+ A N G+ + + F T A
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAH-FVFRTAAAHH 205
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 47.9 bits (114), Expect = 1e-07
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
+ ++ K + + S V+ L T Y + A D ++ TT
Sbjct: 56 TPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV-TTLENVS 114
Query: 77 AP 78
P
Sbjct: 115 PP 116
Score = 41.3 bits (97), Expect = 2e-05
Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 3/60 (5%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ S + LQ T Y+ Y+ ND + TA AP
Sbjct: 149 PANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVI---DASTAIDAP 205
Score = 35.5 bits (82), Expect = 0.002
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 1/57 (1%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ P + + L+ T Y Y+ A + + T
Sbjct: 235 KYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG-RKKT 290
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 47.9 bits (114), Expect = 1e-07
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPF-TTCTAPPAP 78
+ K V G +N L+ TTY + A N GQG YS+ F T P+P
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSP 296
Score = 38.2 bits (89), Expect = 2e-04
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ LQ Y ITA N G + + PP P
Sbjct: 350 HIILEHLQWTMGYEVQITAANRLGYSEPTV----YEFSMPPKP 388
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 45.8 bits (109), Expect = 1e-07
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + V + L + Y F + A N G+GP SE T +
Sbjct: 45 AAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSE--AVRARTGEQSG 102
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 45.8 bits (109), Expect = 1e-07
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
D + + S ++ L+ + Y F + A + G G + T +
Sbjct: 55 DGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPS 113
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 45.5 bits (108), Expect = 2e-07
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC-TAPPAP 78
+ L+ TTY + A N G G S A F T P+
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA 111
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 45.5 bits (108), Expect = 2e-07
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCT-APPAP 78
+R Q + V L+ Y F + A N+ G G S+ T + P+
Sbjct: 61 NRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGPSS 118
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 45.5 bits (108), Expect = 2e-07
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCT-AP 75
+ +R + L T Y F + A N G G S T +
Sbjct: 57 TKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESG 116
Query: 76 PAP 78
P+
Sbjct: 117 PSS 119
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 45.4 bits (108), Expect = 2e-07
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 12 FKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFT 70
+ + + S +V L T Y F + N G P S+
Sbjct: 56 QVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 115
Query: 71 TCTAPP 76
T + P
Sbjct: 116 TLQSGP 121
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 44.9 bits (107), Expect = 2e-07
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 21 RPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
K + S K+ L++ T Y A N G G ++ T +
Sbjct: 47 EVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGPS 104
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 44.7 bits (106), Expect = 3e-07
Identities = 9/56 (16%), Positives = 18/56 (32%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + + ++ L T Y + A G G +S++ TT
Sbjct: 51 GSKMWASQRAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGPS 106
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 46.9 bits (110), Expect = 3e-07
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + ++ V L+ T YR + G+GP + F T PP+
Sbjct: 584 SQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI-KTFRTPELPPSS 636
Score = 46.5 bits (109), Expect = 4e-07
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
S+ V Q T+ ++ ++ Y+F + A N G ++ + P+
Sbjct: 207 SEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSA 266
Score = 36.9 bits (84), Expect = 0.001
Identities = 12/53 (22%), Positives = 16/53 (30%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ G S + KLQ Y + A GQ A T+ A
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHAT 377
Score = 34.2 bits (77), Expect = 0.007
Identities = 5/76 (6%), Positives = 13/76 (17%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ +R + + L Y+ + + T
Sbjct: 438 RWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTT 497
Query: 71 TCTAPPAPLKGKTYFS 86
+ K
Sbjct: 498 PPCSALKGKSHKPIGC 513
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 44.9 bits (106), Expect = 3e-07
Identities = 13/51 (25%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTT 71
K G +F+ V L+ TYRF I A S F
Sbjct: 58 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 44.4 bits (105), Expect = 4e-07
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPLKG 81
+ KLQ TTY + G GP+S + F T + P P G
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT-SPPSGPSSG 107
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 44.3 bits (105), Expect = 4e-07
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
V L + TTY F + A N AG G E T
Sbjct: 63 HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLSGPS 105
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 44.7 bits (106), Expect = 4e-07
Identities = 14/65 (21%), Positives = 26/65 (40%)
Query: 12 FKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
++ + S+ + G + ++ L++ Y + A N AG GP S TT
Sbjct: 55 YRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 114
Query: 72 CTAPP 76
+ P
Sbjct: 115 LESGP 119
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 44.7 bits (106), Expect = 5e-07
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 31 QGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
+ S ++ L++ +Y+F + A N G+ S P+ + P+
Sbjct: 72 PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSS 120
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 43.9 bits (104), Expect = 5e-07
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
SD D K V +G+ + LQ T+Y + N+ G+ +S T
Sbjct: 49 SDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 44.3 bits (105), Expect = 5e-07
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 29 VYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ S V L +Y F + A + G G E T + P
Sbjct: 67 IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREG-VITIESQVSGP 115
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 44.3 bits (105), Expect = 5e-07
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ R ++K + +QG+ + L+ + Y + N G+GP S F T
Sbjct: 64 NRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPS 123
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 43.9 bits (104), Expect = 5e-07
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
F+ ++ + D P DR + + L+ T Y + + ++ FT
Sbjct: 32 GFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKET-FT 90
Query: 71 TCTAPPAPLK 80
T A
Sbjct: 91 TGLAAALEHH 100
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 43.9 bits (104), Expect = 6e-07
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ L+ TTY + A N G G S A F T
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 43.5 bits (103), Expect = 1e-06
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 33 TNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
++ S +N L++ T Y F + A N G G + T +
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSGPS 114
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 43.1 bits (102), Expect = 2e-06
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
S V L +Y+F + A ND G+G +S+ + P
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS-LPESGP 118
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 44.0 bits (104), Expect = 2e-06
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
K G +F+ V L+ TYRF I A S F
Sbjct: 57 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALD 114
Score = 40.9 bits (96), Expect = 3e-05
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC 72
K + S K+ L+ T Y F + + + A +S T
Sbjct: 165 KATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 42.3 bits (100), Expect = 2e-06
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ ++ + T+ + L+ TTY + A G GP S + T
Sbjct: 52 NSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 42.5 bits (100), Expect = 2e-06
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ + ++ L+ +Y + A ++AG GP+ + + T
Sbjct: 49 GAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT 100
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 43.1 bits (102), Expect = 2e-06
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 19 SDRPDDRKHVVYQ--GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
D D +HVV + S + L++ T YR ++ A D G GP S T P
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVP 120
Query: 77 AP 78
+
Sbjct: 121 SG 122
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 42.7 bits (101), Expect = 2e-06
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ + N L++ + Y F ++A G GP S Y T
Sbjct: 73 RRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 25.4 bits (56), Expect = 4.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 52 ITATNDAGQGPYSEAYPFTTC----TAPP 76
++ N G G ++ T +APP
Sbjct: 4 GSSGNRYGPGVSTDDITVVTLSDVPSAPP 32
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 42.4 bits (100), Expect = 2e-06
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
++ + + + +++ L+ Y + A AG G +S F T T
Sbjct: 51 NEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 44.2 bits (104), Expect = 3e-06
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ V ++ ++ L T Y + A D G E T
Sbjct: 540 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTFTTP 588
Score = 43.8 bits (103), Expect = 3e-06
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 27 HVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + L E Y +T G G + P
Sbjct: 448 QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKG 499
Score = 39.6 bits (92), Expect = 1e-04
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE-AYPFTTCTAPPAPLKGKT 83
T S V L+ T Y F I + G+G +S+ + + T P K +
Sbjct: 256 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPS 308
Score = 36.5 bits (84), Expect = 0.001
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 28 VVYQGTNFSCKVNK-LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ T SC V+ ++ A N G+ P P
Sbjct: 150 KAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 201
Score = 32.7 bits (74), Expect = 0.023
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 46 TTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
Y +T N G+ + P
Sbjct: 371 DRYLATLTVRNLVGKSDAAVLTIPACDFQATHP 403
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 43.3 bits (102), Expect = 4e-06
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + V L+ Y + + G+ + T TA P P
Sbjct: 61 AGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL---TQQTAVPPP 117
Score = 31.3 bits (71), Expect = 0.054
Identities = 6/52 (11%), Positives = 19/52 (36%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGP 62
+F +S +D + ++ + + L T Y +++ + +
Sbjct: 144 NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 43.3 bits (102), Expect = 4e-06
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+F +S +D + ++ + + L T Y +++ + +
Sbjct: 217 NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG---R 273
Query: 71 TCTAPPAP 78
T +P
Sbjct: 274 QKTGLDSP 281
Score = 42.1 bits (99), Expect = 1e-05
Identities = 10/62 (16%), Positives = 14/62 (22%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
H + + S + L T Y I A N + P T
Sbjct: 311 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAH 370
Query: 75 PP 76
Sbjct: 371 HH 372
Score = 40.6 bits (95), Expect = 4e-05
Identities = 8/63 (12%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 16 HSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAP 75
+ + + V SC + L Y + D + T
Sbjct: 40 TPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISD---TIIPEV 96
Query: 76 PAP 78
P
Sbjct: 97 PQL 99
Score = 40.6 bits (95), Expect = 4e-05
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
++ + + + V L+ Y + + G+ + T
Sbjct: 126 GYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL---T 182
Query: 71 TCTAPPAP 78
TA P P
Sbjct: 183 QQTAVPPP 190
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 42.9 bits (101), Expect = 5e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ L+ TTY + A N G G S A F T
Sbjct: 174 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 41.6 bits (98), Expect = 6e-06
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 24 DRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQG-PYSEAYPFTTCTAPP 76
+ V + +L+ + Y + A N+AG+G P E+ + T+ P
Sbjct: 60 YAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 42.1 bits (99), Expect = 1e-05
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ V ++ ++ L T Y + A D G E + FTT
Sbjct: 241 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE-FTFTT 288
Score = 38.6 bits (90), Expect = 2e-04
Identities = 7/51 (13%), Positives = 11/51 (21%)
Query: 28 VVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + L E Y +T G G + P
Sbjct: 150 QEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKG 200
Score = 33.2 bits (76), Expect = 0.011
Identities = 5/33 (15%), Positives = 8/33 (24%)
Query: 46 TTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
Y +T N G+ + P
Sbjct: 72 DRYLATLTVRNLVGKSDAAVLTIPACDFQATHP 104
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 40.8 bits (96), Expect = 1e-05
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
V L+ T Y F + A N G S P T + P+
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 41.6 bits (98), Expect = 1e-05
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 33 TNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTC-TAPPAP 78
S V ++ Y F + A N G P S TT P
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKN 107
Score = 37.8 bits (88), Expect = 3e-04
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
+ ++ + + Y + A ND G+ +
Sbjct: 154 ENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAA 194
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 41.7 bits (98), Expect = 1e-05
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
H + + S + L T Y I A N + P T
Sbjct: 219 RHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG---QQSTV 275
Query: 75 PPAP 78
P
Sbjct: 276 SDVP 279
Score = 41.0 bits (96), Expect = 3e-05
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 16 HSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAP 75
+ + + V SC + L Y + D + T A
Sbjct: 39 TPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISD---TIIPAV 95
Query: 76 PAP 78
P P
Sbjct: 96 PPP 98
Score = 38.7 bits (90), Expect = 2e-04
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
S +D + ++ + + L T Y +++ + + T
Sbjct: 131 SPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG---RQKTGLD 187
Query: 77 AP 78
+P
Sbjct: 188 SP 189
Score = 38.3 bits (89), Expect = 2e-04
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ + G+ + ++ L+ Y + A G P S P +
Sbjct: 313 TGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSK-PISI 364
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 40.1 bits (94), Expect = 1e-05
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
+ + P D V + S + L+ TTY I A N P FTT +
Sbjct: 35 TFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPVST-TFTT-GS 92
Query: 75 PPAP 78
Sbjct: 93 LEHH 96
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 40.4 bits (95), Expect = 2e-05
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPA 77
+P H + L Y F + A N G+ SEA + T + P
Sbjct: 58 MHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 78 P 78
Sbjct: 118 K 118
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 40.3 bits (94), Expect = 2e-05
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 12 FKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
++ + L + T S + L++ TY + + QG SE+ T
Sbjct: 52 YRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111
Query: 72 C--TAPPA 77
+ P +
Sbjct: 112 TEESGPSS 119
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 40.0 bits (94), Expect = 2e-05
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAPLK 80
V+ S + +L Y F + + N G + K
Sbjct: 65 FTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIYK 120
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 41.3 bits (97), Expect = 2e-05
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ L + Q V L+ + Y I+A + S
Sbjct: 44 FILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASST---Q 100
Query: 71 TCTAPPAP 78
T AP
Sbjct: 101 FTTEIDAP 108
Score = 36.7 bits (85), Expect = 8e-04
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
++ + G + L T Y I+A ++ Q + T +P
Sbjct: 144 GEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATM---NARTELDSP 200
Score = 34.4 bits (79), Expect = 0.006
Identities = 11/54 (20%), Positives = 15/54 (27%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ + V S + L+ Y ITA Q S FT
Sbjct: 230 TFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAFT 283
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 41.1 bits (95), Expect = 3e-05
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
C++ L Y I AT+ AG G ++E F P
Sbjct: 848 ALERGCRLRGLSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVP 893
Score = 38.0 bits (87), Expect = 3e-04
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC-TAP 75
+ ++ + S ++ L+ T YR + A N + + T P
Sbjct: 729 GNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMP 788
Query: 76 PAP 78
A
Sbjct: 789 EAK 791
Score = 36.4 bits (83), Expect = 0.001
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 5/62 (8%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQ-----GPYSEAYPFTTCTAPP 76
P R + + + L+ T Y ++ G S+ T P
Sbjct: 536 PPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP 595
Query: 77 AP 78
+
Sbjct: 596 SV 597
Score = 27.6 bits (60), Expect = 1.4
Identities = 4/42 (9%), Positives = 8/42 (19%)
Query: 37 CKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
C T+ + + C + P
Sbjct: 647 CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKT 688
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 39.7 bits (93), Expect = 3e-05
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 24 DRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + + L + Y + A N+ G+G T P
Sbjct: 70 HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE-SAVTRPHTSGP 123
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 40.5 bits (95), Expect = 4e-05
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
+R V Q V L T+Y+F + A N G SE P T
Sbjct: 239 ATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus
design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 39.0 bits (91), Expect = 4e-05
Identities = 10/66 (15%), Positives = 23/66 (34%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
++ +++ S+ P + K + ++ S + L Y + A D + P T
Sbjct: 31 GYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQTT 90
Query: 71 TCTAPP 76
Sbjct: 91 GGHHHH 96
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 39.0 bits (91), Expect = 4e-05
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ +++ + K V G + LQ T YR ++A AG+ A T
Sbjct: 37 HYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSA---T 93
Query: 71 TCTAPPAP 78
TA P+
Sbjct: 94 GQTACPSG 101
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 39.1 bits (91), Expect = 4e-05
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 24 DRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTC-TAPPAP 78
+ GT V L + Y F + A + S +T + P+
Sbjct: 52 EVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 39.0 bits (91), Expect = 5e-05
Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
S +++ T I A G GP+S+ A P
Sbjct: 63 SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI-PAHSGP 121
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 40.0 bits (93), Expect = 5e-05
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
F+ + LS+ D+ +++ T S + L Y + ++ G+ + T
Sbjct: 141 GFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 200
Query: 71 T 71
T
Sbjct: 201 T 201
Score = 39.3 bits (91), Expect = 9e-05
Identities = 11/73 (15%), Positives = 19/73 (26%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
+ + K G S + L+ Y + + G + T
Sbjct: 32 KYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 91
Query: 71 TCTAPPAPLKGKT 83
T T+ P T
Sbjct: 92 TSTSTPVTSNTVT 104
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 40.2 bits (93), Expect = 6e-05
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 16 HSLSDRPDDRKHVVYQ-GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
S S + K ++ L Y F + A N G+ + T
Sbjct: 322 ESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVY 381
Query: 75 PPAP 78
P P
Sbjct: 382 PHTP 385
Score = 30.6 bits (68), Expect = 0.11
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 24 DRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
R YQ S K+ L Y I + +D G + P
Sbjct: 34 QRSRSCYQLEKTSIKIPALSH-GDYEITINSLHDFGSSTSKFTLNEQNVSLIPDT 87
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 38.1 bits (89), Expect = 9e-05
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
V L F + N AG+ + P T + P+
Sbjct: 67 GFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 37.4 bits (87), Expect = 1e-04
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
++ ++S + G + ++ L+ + Y + A +D + S+ T
Sbjct: 31 RYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDME---SQPLIGT 87
Query: 71 TCTAPPA 77
TA PA
Sbjct: 88 QSTAIPA 94
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein;
NMR {Homo sapiens} PDB: 2h45_A
Length = 95
Score = 37.1 bits (86), Expect = 2e-04
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
F+ + LS+ D+ +++ T S + L Y + ++ G+ + T
Sbjct: 35 GFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Query: 71 T 71
T
Sbjct: 95 T 95
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 37.6 bits (87), Expect = 2e-04
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 6 EFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
++ + +A+ D +V V+ LQ T Y F + A N AG SE
Sbjct: 51 QYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSE 109
Query: 66 AYPFTTCTAPP 76
T + P
Sbjct: 110 PTRLKTNSQPF 120
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/57 (17%), Positives = 17/57 (29%)
Query: 25 RKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAPLKG 81
+ ++ G S ++ L T+Y + A P T P G
Sbjct: 49 TQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPSSG 105
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 36.7 bits (85), Expect = 3e-04
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYP----FT 70
++ + + ++ + ++ L Y + A + G P +
Sbjct: 40 TYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYR 99
Query: 71 TC 72
TC
Sbjct: 100 TC 101
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 38.0 bits (87), Expect = 3e-04
Identities = 13/49 (26%), Positives = 16/49 (32%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
D +K S KL T Y F I A G+ E+ T
Sbjct: 188 DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 36.2 bits (84), Expect = 4e-04
Identities = 12/54 (22%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
G S + L TTY +T G TT AP
Sbjct: 48 GHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTG-RVTTKKAPS 100
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 36.4 bits (84), Expect = 4e-04
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 21 RPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
R + +V TN + L Y + AT D G G SE +
Sbjct: 58 RTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE--QIRIPRITSSG 113
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 36.2 bits (84), Expect = 4e-04
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAP 78
+ L + A N AG P + P+
Sbjct: 66 KFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 36.3 bits (84), Expect = 6e-04
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 17 SLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPP 76
++ G+ ++ L T Y + + FTT P
Sbjct: 41 QVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASIT-FTTGLEAP 99
Query: 77 APLK 80
L+
Sbjct: 100 RDLE 103
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 35.1 bits (81), Expect = 0.001
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
SF + S++ + ++ G+ S + L+ T Y I + A FT
Sbjct: 31 SFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAE-FT 89
Query: 71 TCTAPPAP 78
T
Sbjct: 90 TGGHHHHH 97
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 35.5 bits (82), Expect = 0.002
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + + S + L T Y + A + + T +P
Sbjct: 46 GKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTI---KGSTVVGSP 98
Score = 31.6 bits (72), Expect = 0.037
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 3/59 (5%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPA 77
V G+ K+ KL Y I + + TA +
Sbjct: 131 PITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG---ILKTALDS 186
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 35.7 bits (82), Expect = 0.002
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA-YPFTTCTAPPAPLKGKT 83
T S V L+ T Y F I + G+G +S+ + T P K +
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213
Score = 33.4 bits (76), Expect = 0.010
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 30 YQGTNFSCKVNK-LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ T SC V+ ++ A N G+ P P
Sbjct: 57 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 106
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 35.2 bits (80), Expect = 0.003
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 30 YQGTNFSCKVNK-LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ T SC V+ ++ A N G+ P P
Sbjct: 153 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP 202
Score = 32.1 bits (72), Expect = 0.039
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 31 QGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
T S V L+ T Y F I + G+G +S+
Sbjct: 256 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 290
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 33.9 bits (78), Expect = 0.004
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 36 SCKVNKLQELTTYRFYITATNDAGQ-GPYSEAYPFTTCTAPP 76
V+ L E Y F + A N AG P SE TC
Sbjct: 69 EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 32.7 bits (75), Expect = 0.007
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA 66
++ + + G++ + ++ L Y + A YS +
Sbjct: 38 TYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYYSYYDLYYSYS 89
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 33.0 bits (75), Expect = 0.008
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 15 SHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
+ RP ++ ++ GT S + L+ T Y + + + T +
Sbjct: 50 TLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG-TARTLSG 108
Query: 75 PP 76
P
Sbjct: 109 PS 110
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding,
phosphoprotein; 2.10A {Homo sapiens}
Length = 103
Score = 32.4 bits (74), Expect = 0.010
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 19 SDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEA 66
+ + G + ++ L+ Y + A + G +
Sbjct: 48 TGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNS 95
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 33.8 bits (76), Expect = 0.010
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 4 TTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNK--LQELTTYRFYITATNDAGQG 61
T F SFK+ + + D V + C + + L ++ A N G
Sbjct: 129 PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTS 188
Query: 62 PYSEAYPFTTCTAPPAP 78
+ P
Sbjct: 189 MSPQLCLDPMDVVKLEP 205
Score = 29.5 bits (65), Expect = 0.26
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE---AYPFTTCTAPP 76
++ L T Y I G +S+ + T
Sbjct: 251 GEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310
Query: 77 AP 78
AP
Sbjct: 311 AP 312
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 33.8 bits (76), Expect = 0.010
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 16 HSLSDRPDDRKHVVY-QGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTA 74
S+S + + + V + F +T N GQ + T A
Sbjct: 327 ESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVA 386
Query: 75 PPAP 78
P P
Sbjct: 387 PHDP 390
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 32.2 bits (73), Expect = 0.013
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
++ ++ + + G + ++ L+ Y + A D
Sbjct: 33 YYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHE 92
Query: 71 TCTAPPAPLKGKT 83
+ P + +T
Sbjct: 93 S----PISINYRT 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.031
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 21/73 (28%)
Query: 1 MIKTTEFNQASFKASHSLSDRPDDRKHV-------------VY-----QGTNFSCKVNKL 42
++KT E + A ++ RP D+K + QG +L
Sbjct: 116 LVKTKELIKNYITARI-MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEEL 173
Query: 43 QEL-TTYRFYITA 54
++L TY +
Sbjct: 174 RDLYQTYHVLVGD 186
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 32.1 bits (72), Expect = 0.035
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 23 DDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYP---FTTCTAPPAP 78
+ + C ++ + + A + GQG +SE P T T +P
Sbjct: 244 KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSP 302
Score = 30.6 bits (68), Expect = 0.12
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 4 TTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNK-LQELTTYRFYITATNDAGQGP 62
TT+ K +S ++ + + FSC++ + + Y + + G
Sbjct: 124 TTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF 183
Query: 63 YSEAYPFTTCTAPPAP 78
P P
Sbjct: 184 SKTQTFQGCGILQPDP 199
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 32.1 bits (73), Expect = 0.036
Identities = 9/57 (15%), Positives = 12/57 (21%)
Query: 22 PDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + L+ Y F I A N GQ E
Sbjct: 52 MGGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.037
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 24 DRKHVVYQGTNFSCK---VNKLQELTTYRFYITATNDAGQGPYSEAY 67
++K + + T ++ +N LQ+L Y+ YI ND P E
Sbjct: 504 EQK-IRHDSTAWNASGSILNTLQQLKFYKPYIC-DND----PKYERL 544
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 30.7 bits (70), Expect = 0.040
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 29 VYQGTNF-------SCKVNKLQELTTYRFYITATNDAG-QGPYSEAYPFTT 71
VY GT + ++ L T+Y F + A + AG S A T
Sbjct: 38 VYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 30.8 bits (69), Expect = 0.090
Identities = 7/50 (14%), Positives = 13/50 (26%)
Query: 29 VYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + C + L+ Y +I + G P P
Sbjct: 63 LQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLP 112
Score = 25.0 bits (54), Expect = 8.6
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 29 VYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
VY + S + Y + G G +S
Sbjct: 161 VYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSN 197
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 29.9 bits (67), Expect = 0.10
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 11 SFKASHSLSDRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFT 70
++ ++ + + G+ + ++ L+ Y + A P +
Sbjct: 58 YYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSK-PIS 116
Query: 71 T 71
Sbjct: 117 I 117
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 29.7 bits (67), Expect = 0.11
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 32 GTNFSCKVNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
TN++ + T Y + ++A ++ + S
Sbjct: 56 STNYT--DTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 30.2 bits (67), Expect = 0.14
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 4 TTEFNQASFKASHSLSDRPDDRKHVVYQGTNFSCKVNK--LQELTTYRFYITATNDAGQG 61
T F SF++ + D V + +C + + L ++ A N G
Sbjct: 35 PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSS 94
Query: 62 PYSEAYPFTTCTAPPAP 78
+ P
Sbjct: 95 ESPKLCLDPMDVVKLEP 111
Score = 29.0 bits (64), Expect = 0.35
Identities = 4/46 (8%), Positives = 12/46 (26%)
Query: 20 DRPDDRKHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE 65
+ + ++ L + Y + + G +S
Sbjct: 157 KGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 30.3 bits (67), Expect = 0.17
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 39 VNKLQELTTYRFYITATNDAGQGPYSEAYPFTT 71
+ + Y + A++ +SE F T
Sbjct: 268 PQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDT 300
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 29.6 bits (66), Expect = 0.24
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 26 KHVVYQGTNFSCKVNKLQELTTYRFYITATNDAGQGPYSE-AYPFTTCTAPPAPL 79
+V Y + + L+ +YR + A A +SE + + P
Sbjct: 150 YNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPF 204
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 28.5 bits (63), Expect = 0.56
Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 31 QGTNFSCKVNK--LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
G SC K TY + ATN G E Y T P P
Sbjct: 56 TGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDP 105
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 28.2 bits (62), Expect = 0.67
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 2/50 (4%)
Query: 31 QGTNFSCKVNK--LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
G N C+ + + + +++ S P P
Sbjct: 191 DGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLP 240
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: 2PE; 1.70A
{Silicibacter SP}
Length = 235
Score = 27.6 bits (61), Expect = 0.93
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 57 DAGQGPYSEAYPFTTCTAPP-----APLKGKTYFSLVLSRGVCLRAGFLWVFASGRAFCV 111
GQ P+ A +LVL+ V L + G F
Sbjct: 18 GPGQDPFDLACQKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGVGFQN 77
Query: 112 SARSPCPGQ 120
+ + P +
Sbjct: 78 ALGALAPPE 86
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 27.2 bits (59), Expect = 0.96
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 29 VYQGTNFSCKVNKLQELTTYR---------FYITATNDAGQGPYSE 65
+Y G SC V Q + F I+A N+ G GP ++
Sbjct: 63 IYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQ 108
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 26.8 bits (58), Expect = 2.0
Identities = 5/52 (9%), Positives = 12/52 (23%), Gaps = 4/52 (7%)
Query: 31 QGTNFSCKVNKLQELTT----YRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
G N +C + L+ + ++ + P
Sbjct: 172 LGRNIACWFPRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINP 223
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 26.9 bits (58), Expect = 2.2
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 42 LQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
+ + Y + A++ +SE F T
Sbjct: 275 VFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLL 311
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 25.0 bits (54), Expect = 8.3
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 33 TNFSCKV-NKLQELTTYRFYITATNDAGQGPYSEAYPFTTCTAPPAP 78
C V + + Y + AT + +S +
Sbjct: 65 EGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILT 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.410
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,784,425
Number of extensions: 86978
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 169
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)