BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy702
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 47/267 (17%)
Query: 40 LPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTS----RQDRYMIIQDHKPLSD--- 92
+P E+ G+ H+K ++ D+ V+ +GA+++ Y R DRY I H L+D
Sbjct: 130 VPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDRYQKI-THAELADSXV 188
Query: 93 -FFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTR 151
F +D ++LD + P+ VT R R++ + ++ +
Sbjct: 189 NFIND-----------------YLLDFS-AVYPLDVTNR----PRTKEIRGNIRAYRKDL 226
Query: 152 NTTAVSPALSSTQPPDTW-LAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNL 210
S+ + P+ ++PL L +L+ + L L + + + + T YFN
Sbjct: 227 AQNGEYSLKSAVKLPNVLSVSPLFGLGASGNELNQVIEDLFLQVQKK---LVICTPYFNF 283
Query: 211 --TQEYVRAMLDKPRVNYSVLMAHPTANGFL----GARGAAGGIPYAYTALAARFLSRVS 264
T ++ A L + +++ AN F AG +PY Y + RF +
Sbjct: 284 PRTLQHKIATLLENGKRVEIIVGDKVANDFYIPPEQPFKXAGALPYLYESNLRRFCEKFE 343
Query: 265 NLKVAMFEYVRSGW-----TYHAKGLW 286
++ + V W TYH KG+W
Sbjct: 344 T-QIESGQLVVRLWRDGDNTYHLKGVW 369
>pdb|4GGJ|A Chain A, Crystal Structure Of Zucchini From Mouse (Mzuc PLD6
MITOPLD)
pdb|4GGK|A Chain A, Crystal Structure Of Zucchini From Mouse (Mzuc PLD6
MITOPLD) BOUND To Tungstate
Length = 196
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 43 RYNELIGLQHMKFYLIDNCVIITGA-NLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRV 100
R+++ +G H KF ++D V+ITG+ N + + ++ +I++D + + F ++ R+
Sbjct: 115 RHDQDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLIMEDTEYVRLFLEEFERI 173
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 96 DLSRVLCKISFQLTPDGKFILDKEF-PLSPVSVTQRG--EYLKRSRSLVLDMYDGYRTRN 152
+ + +++ TPDGKF + F P+ V G Y+ R ++ +D DG +
Sbjct: 142 NYGQARAAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDT-DG-KGYF 199
Query: 153 TTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNL 210
+A + + L EL P + + S KL + R+ C+ GY+ L
Sbjct: 200 ISAANENMD---------LHLYELTPDYKNIASLKAKLFVGQQREAPCLIKRNGYYYL 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,406,017
Number of Sequences: 62578
Number of extensions: 378080
Number of successful extensions: 1547
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 11
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)