Query psy702
Match_columns 308
No_of_seqs 148 out of 481
Neff 6.4
Searched_HMMs 46136
Date Sat Aug 17 00:44:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3964|consensus 100.0 6.4E-84 1.4E-88 610.1 17.3 300 1-307 95-406 (469)
2 PRK09428 pssA phosphatidylseri 100.0 5E-50 1.1E-54 396.6 26.5 257 7-307 105-377 (451)
3 COG1502 Cls Phosphatidylserine 99.9 1.5E-21 3.3E-26 191.6 18.4 207 42-307 156-376 (438)
4 PRK11263 cardiolipin synthase 99.9 5.9E-21 1.3E-25 187.8 21.1 223 8-307 78-309 (411)
5 PRK01642 cls cardiolipin synth 99.8 8.6E-20 1.9E-24 183.0 20.2 196 46-307 215-421 (483)
6 PRK12452 cardiolipin synthetas 99.8 2.2E-19 4.7E-24 181.1 20.6 217 20-307 219-447 (509)
7 PHA02820 phospholipase-D-like 99.8 8.6E-17 1.9E-21 159.0 23.0 200 49-307 112-344 (424)
8 PHA03003 palmytilated EEV memb 99.6 1.4E-13 2.9E-18 134.1 20.4 94 184-306 217-329 (369)
9 cd00138 PLDc Phospholipase D. 99.1 1.6E-09 3.5E-14 93.4 12.1 100 185-307 23-135 (176)
10 PHA02820 phospholipase-D-like 98.9 1.3E-08 2.8E-13 101.0 12.2 94 185-306 28-134 (424)
11 PF13091 PLDc_2: PLD-like doma 98.8 1.7E-08 3.7E-13 82.2 8.9 93 189-307 2-96 (126)
12 PRK05443 polyphosphate kinase; 98.5 1.8E-06 4E-11 90.3 14.6 158 50-307 433-615 (691)
13 PRK13912 nuclease NucT; Provis 98.4 2.4E-06 5.3E-11 75.0 10.8 96 186-306 36-140 (177)
14 cd00138 PLDc Phospholipase D. 98.3 2.5E-06 5.4E-11 73.4 8.5 54 48-101 111-166 (176)
15 KOG3603|consensus 98.3 3.2E-05 7E-10 75.8 16.7 246 9-306 114-401 (456)
16 PRK11263 cardiolipin synthase 98.1 1.4E-05 3.1E-10 79.2 9.9 92 190-306 25-131 (411)
17 PRK05443 polyphosphate kinase; 98.0 5.3E-05 1.2E-09 79.5 11.4 104 187-307 352-462 (691)
18 TIGR03705 poly_P_kin polyphosp 97.9 0.00013 2.7E-09 76.4 12.5 83 189-307 510-606 (672)
19 smart00155 PLDc Phospholipase 97.6 9E-05 2E-09 45.6 3.3 26 48-73 2-28 (28)
20 smart00155 PLDc Phospholipase 97.1 0.00077 1.7E-08 41.4 3.5 25 277-307 2-26 (28)
21 PHA03003 palmytilated EEV memb 97.1 0.0041 9E-08 60.8 10.5 92 186-306 34-136 (369)
22 PF13091 PLDc_2: PLD-like doma 96.9 0.0017 3.7E-08 52.5 5.3 89 8-97 22-121 (126)
23 PRK01642 cls cardiolipin synth 96.8 0.007 1.5E-07 61.3 10.1 93 190-306 133-240 (483)
24 PLN02352 phospholipase D epsil 96.8 0.056 1.2E-06 57.4 16.4 55 47-102 296-397 (758)
25 PRK13912 nuclease NucT; Provis 96.7 0.0089 1.9E-07 52.4 8.4 55 46-101 115-170 (177)
26 PLN02270 phospholipase D alpha 96.7 0.14 3E-06 54.8 18.4 56 46-102 325-427 (808)
27 PF00614 PLDc: Phospholipase D 96.6 0.001 2.3E-08 41.2 1.5 25 48-72 2-27 (28)
28 PLN02866 phospholipase D 96.5 0.23 5.1E-06 54.3 19.1 54 48-102 444-544 (1068)
29 PRK12452 cardiolipin synthetas 96.5 0.014 3E-07 59.6 9.4 92 190-306 157-262 (509)
30 PF00614 PLDc: Phospholipase D 96.4 0.0038 8.2E-08 38.7 2.8 24 277-306 2-25 (28)
31 COG3886 Predicted HKD family n 95.9 0.056 1.2E-06 48.2 8.9 101 185-306 38-143 (198)
32 PF09565 RE_NgoFVII: NgoFVII r 95.7 0.1 2.2E-06 49.8 10.6 94 199-307 9-106 (296)
33 PRK09428 pssA phosphatidylseri 95.5 0.11 2.4E-06 52.3 10.6 105 186-306 35-156 (451)
34 TIGR03705 poly_P_kin polyphosp 94.1 0.52 1.1E-05 49.8 11.5 106 186-307 342-453 (672)
35 PLN03008 Phospholipase D delta 93.3 13 0.00028 40.4 20.1 55 47-102 368-463 (868)
36 COG1502 Cls Phosphatidylserine 90.8 1.7 3.8E-05 42.6 9.8 92 190-306 77-185 (438)
37 KOG3603|consensus 86.6 3.9 8.5E-05 40.9 8.8 97 186-306 75-190 (456)
38 PF13090 PP_kinase_C: Polyphos 83.1 3.4 7.4E-05 40.3 6.6 77 210-307 48-132 (352)
39 KOG1329|consensus 80.2 1.2 2.5E-05 48.1 2.5 21 52-72 703-724 (887)
40 PLN02352 phospholipase D epsil 78.3 1.4 3.1E-05 47.0 2.4 23 51-73 608-631 (758)
41 COG0855 Ppk Polyphosphate kina 75.0 12 0.00025 39.5 7.8 81 211-307 383-466 (696)
42 KOG1329|consensus 70.7 3.3 7.2E-05 44.8 2.8 21 280-306 702-722 (887)
43 PF09565 RE_NgoFVII: NgoFVII r 62.9 29 0.00062 33.3 7.2 54 52-105 82-141 (296)
44 PLN02866 phospholipase D 59.5 8.1 0.00018 42.8 3.2 30 51-80 868-898 (1068)
45 PLN03008 Phospholipase D delta 51.2 11 0.00023 41.0 2.5 25 51-75 717-742 (868)
46 PF06087 Tyr-DNA_phospho: Tyro 44.1 9.9 0.00022 38.2 0.9 83 223-306 286-376 (443)
47 PLN02270 phospholipase D alpha 42.0 19 0.00041 39.0 2.6 25 51-75 658-683 (808)
48 PF13072 DUF3936: Protein of u 41.1 18 0.00039 24.0 1.4 14 53-66 1-14 (38)
49 COG4742 Predicted transcriptio 39.4 73 0.0016 30.0 5.8 59 198-273 139-201 (260)
50 CHL00139 rpl18 ribosomal prote 33.9 78 0.0017 25.8 4.4 45 238-283 50-94 (109)
51 PF06087 Tyr-DNA_phospho: Tyro 33.1 27 0.00058 35.1 1.9 43 39-81 90-143 (443)
52 KOG3964|consensus 30.4 14 0.0003 36.9 -0.6 43 37-79 198-240 (469)
53 cd07420 MPP_RdgC Drosophila me 29.4 98 0.0021 29.9 5.1 68 226-306 226-297 (321)
54 PF00541 Adeno_knob: Adenovira 29.2 29 0.00063 30.6 1.3 28 56-83 59-87 (171)
55 PRK10846 bifunctional folylpol 28.5 35 0.00075 33.7 1.8 34 1-36 57-90 (416)
56 PF11495 Regulator_TrmB: Archa 27.0 86 0.0019 28.4 4.0 42 188-232 15-58 (233)
57 PF11520 Cren7: Chromatin prot 26.6 46 0.001 24.2 1.7 22 20-41 35-56 (60)
58 PF12111 PNPase_C: Polyribonuc 22.4 29 0.00063 23.2 0.0 18 268-285 3-20 (39)
59 PTZ00244 serine/threonine-prot 21.8 3.5E+02 0.0076 25.7 7.2 95 199-306 162-268 (294)
60 TIGR01499 folC folylpolyglutam 21.5 65 0.0014 31.4 2.3 33 1-35 26-58 (397)
61 cd07418 MPP_PP7 PP7, metalloph 20.9 1.8E+02 0.0039 28.9 5.1 78 226-306 246-332 (377)
No 1
>KOG3964|consensus
Probab=100.00 E-value=6.4e-84 Score=610.07 Aligned_cols=300 Identities=43% Similarity=0.673 Sum_probs=257.4
Q ss_pred CCCCCChhhhhHH--HHHhcCCceEEEEeeCCCCcccccccCCCccccccCcceeEEEEecCcEEeecccCCcCcccccC
Q psy702 1 TRGDVNSKTLLSP--IVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQ 78 (308)
Q Consensus 1 ~rg~~~s~~~l~~--l~~~~~~~v~i~LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~YftnRq 78 (308)
|||-.+++|||.| |.++|++||+++|||||.|+|+.|+++|.||||++|+||||||+|||+||+||||||+|||||||
T Consensus 95 tr~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddeviiSGanls~dyfTNRq 174 (469)
T KOG3964|consen 95 TRELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEVIISGANLSNDYFTNRQ 174 (469)
T ss_pred cccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhhhcccccchhhhhcccc
Confidence 5778899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCcchHHHHHHHHHHHHhccceeecCCCccccC--CCCCCCCCCcchhhHHHHHHH----HHHHHhhhcccccc
Q psy702 79 DRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILD--KEFPLSPVSVTQRGEYLKRSR----SLVLDMYDGYRTRN 152 (308)
Q Consensus 79 DRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~--~~~~~~p~~~~~~~~f~~~~~----~~l~~~~~~~~~~~ 152 (308)
|||++|++ +.+||||..+|+.++++|+++.++...... +++.+.|...- ..+..++. ....++++.....
T Consensus 175 dry~L~sd-r~~adF~f~l~dlvss~sl~~~~~~~~~~i~~~n~~v~p~~~~--~~a~~q~sqll~~~~s~~l~~~p~~- 250 (469)
T KOG3964|consen 175 DRYYLFSD-RRLADFYFKLHDLVSSFSLQKIPDESDGSIHTKNPRVDPIENL--SGANMQMSQLLTGHSSSLLQQNPID- 250 (469)
T ss_pred ceeEEEec-ccHHHHHHHHHHHHhhhhhhhCcchhhcccccCCccccchhhH--HHhHHHHHHHHHhhhHHHhhhhhHh-
Confidence 99999999 999999999999999999999998665432 24445554431 12222222 2223333221100
Q ss_pred cccCCCCCCCCCCCCeEEEEeecCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHHcCCCCcEEEEecC
Q psy702 153 TTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAH 232 (308)
Q Consensus 153 ~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~~~~~~~v~Ii~as 232 (308)
.+..+.....+|+||+|++||+|..+..++.++..|+..+....+|+|||||||++++|++.|++..|+++.|++|+
T Consensus 251 ---~a~~~~~rp~~da~~~PL~~~~~~~~~~ke~v~~~l~t~~~~~~~~~lttGYfNl~~~y~k~L~~~~~a~~sil~as 327 (469)
T KOG3964|consen 251 ---AAGAFDRRPAPDAWIYPLFQMKPIEIQFKEIVTSTLLTEALRGAKWTLTTGYFNLTQAYMKQLLLGTGAEYSILLAS 327 (469)
T ss_pred ---HhhccCCCcCccceeeecccCccccchhhHHhHHHHHHHHhccceEEEeeccccCcHHHHHHHhhccccceEEEecC
Confidence 11111133456999999999999999999888888888876688999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccChhHHHHHHHHHHHHHh----hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 233 PTANGFLGARGAAGGIPYAYTALAARFLSRV----SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 233 p~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l----~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
|+|||||+++|++|.||++|++++++|++.+ ++++|.++||+++||||||||+|.+......|++|+|||||||+
T Consensus 328 P~aNgF~~akgva~~ip~aY~yi~rqflesv~~~~q~h~v~l~E~q~~GwtyHaKGlW~~l~~~~~p~lTvIGSSNf~~ 406 (469)
T KOG3964|consen 328 PEANGFYGAKGVAGAIPPAYVYIARQFLESVCRLKQNHRVQLQEYQRRGWTYHAKGLWLYLAGSSLPFLTVIGSSNFGR 406 (469)
T ss_pred ccccccccCCCccccCcHHHHHHHHHHHHHHHhhcccccchHHHhhcCCcceeccceeeecccccCceeEEecCCCccc
Confidence 9999999999999999999999999999998 45679999999999999999999998888889999999999985
No 2
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=5e-50 Score=396.58 Aligned_cols=257 Identities=22% Similarity=0.363 Sum_probs=198.1
Q ss_pred hhhhhHHHHHhcCCceEEEEeeCCCCcccccccCCCccccccCcceeEEEEecCcEEeecccCCcCcccc----cCcceE
Q psy702 7 SKTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTS----RQDRYM 82 (308)
Q Consensus 7 s~~~l~~l~~~~~~~v~i~LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~Yftn----RqDRY~ 82 (308)
.++++.+|.+++| +|+|.+|+. |.+++|++|++|+|+|||||+|++|||||+++||++ |+|||+
T Consensus 105 ~~~~~~~l~~~~~-gv~v~~f~~-----------p~~~~e~~gr~HrKi~IiD~~v~ysGaNi~d~Yl~~~~~~r~Dry~ 172 (451)
T PRK09428 105 NADWYCEMAQEYP-GVDIPVYGV-----------PVNTREALGVLHLKGFIIDDTVLYSGASLNNVYLHQHDKYRYDRYH 172 (451)
T ss_pred CHHHHHHHHHhCC-CceEEEcCC-----------ccccchhhhhceeeEEEECCCEEEecccccHHHhcCCcccCcceEE
Confidence 3788889988765 699999964 557889999999999999999999999999999998 999999
Q ss_pred EecCcchHHHHHHHHHHHHhccceeecCCCccccCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCC
Q psy702 83 IIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSS 162 (308)
Q Consensus 83 ~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (308)
+|+| +.++|++..++++| +..+++++... .+..|..... +...+..+..+.. . ..... + .
T Consensus 173 ~i~g-~~la~~~~~fi~~~------~~~~~~v~~l~-~~~~~~~~~~-~~~~~~~~~~l~~---~----~~~~~-~---~ 232 (451)
T PRK09428 173 LIRN-AELADSMVNFIQQN------LLNSPAVNRLD-QPNRPKTKEI-KNDIRQFRQRLRD---A----AYQFQ-G---Q 232 (451)
T ss_pred EEeC-chHHHHHHHHHHHH------hhccCcccccc-ccccccchhh-HHHHHHHHHHHhh---h----ccCcc-c---c
Confidence 9999 99999999999998 23333332211 1112322111 1111122222221 1 11000 0 1
Q ss_pred CCCCCeEEEEeecCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCC
Q psy702 163 TQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLG 240 (308)
Q Consensus 163 ~~~~dt~v~P~~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~ 240 (308)
.++.+++|+|++|+||. ..-++++..++..+ +++|+||||||||++.++++|. +.+|++|+|||++++|||||+
T Consensus 233 ~~~~~~~v~p~~g~g~~--~~l~~~~~~li~~A--~~~i~I~TPYF~p~~~l~~~L~~a~~rGv~V~Ii~~~~~andfy~ 308 (451)
T PRK09428 233 ANNDELSVTPLVGLGKK--NLLNKTIFHLMASA--EQKLTICTPYFNLPAILVRNIIRLLRRGKKVEIIVGDKTANDFYI 308 (451)
T ss_pred cCCCCeEEeeeeccCCc--hHHHHHHHHHHhcc--CcEEEEEeCCcCCCHHHHHHHHHHHhcCCcEEEEcCCcccccCcC
Confidence 23457889999999986 23446777888887 7899999999999999999876 579999999999999999999
Q ss_pred Ccc----cccChhHHHHHHHHHHHHHh---hcCc---eEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 241 ARG----AAGGIPYAYTALAARFLSRV---SNLK---VAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 241 s~g----~sg~IP~~Y~~~~~~f~~~l---~~~~---v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+++ .+|.+|++|+.+.++|.++. .+.| |++|+| ++|||||||||+| ..+++|||+|||+
T Consensus 309 ~~d~~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~~--~~~~~HaK~i~vD------~~~~~iGS~Nld~ 377 (451)
T PRK09428 309 PPDEPFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWKD--GDNSYHLKGIWVD------DRWMLLTGNNLNP 377 (451)
T ss_pred CCccHHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEec--CCCcceEEEEEEe------CCEEEEcCCCCCh
Confidence 886 77999999999999998754 5566 888876 8999999999998 3699999999985
No 3
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.88 E-value=1.5e-21 Score=191.59 Aligned_cols=207 Identities=20% Similarity=0.196 Sum_probs=146.2
Q ss_pred CccccccCcceeEEEEecCcEEeec-ccCCcCccccc------CcceEEecCcchHHHHHHHHHHHHhccceeecCCCcc
Q psy702 42 HRYNELIGLQHMKFYLIDNCVIITG-ANLSGDYFTSR------QDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKF 114 (308)
Q Consensus 42 ~r~nE~~Gv~H~K~yvfDd~viiSG-ANLs~~YftnR------qDRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~ 114 (308)
.++.+..+.+|.|++|+||.+.++| +|++++||+.+ +|.++.+.+ +.+.+....+++.|.... ....
T Consensus 156 ~~~~~~~~r~H~K~~viD~~i~~vGg~N~~d~y~~~~~~~~~~~D~~~~~~g-~~v~~l~~~f~~~w~~~~-----~~~~ 229 (438)
T COG1502 156 LRFRRLNRRLHRKIVVIDGKVAFVGGANIGDEYFHKDKGLGYWRDLHVRITG-PAVADLARLFIQDWNLES-----GSSK 229 (438)
T ss_pred chhhhhhccccceEEEEcCCEEEecCcccchhhhccCcCcccceeeeEEEEC-HHHHHHHHHHHHHhhhcc-----CcCc
Confidence 5788999999999999999988887 99999999986 899999999 999999999999982221 1000
Q ss_pred ccCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEEeecCCCCCCCC--c---HHHHH
Q psy702 115 ILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQL--D---SRVTK 189 (308)
Q Consensus 115 ~~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~~--d---~~~~~ 189 (308)
..... ..+... ... ... ......+.+ +..||..... . .+.+.
T Consensus 230 ~~~~~--~~~~~~-------------------~~~--~~~-------~~~~~~~~~---~~~~P~~~~~~~~~~~~~~~~ 276 (438)
T COG1502 230 PLLAL--VRPPLQ-------------------SLS--LLP-------VGRGSTVQV---LSSGPDKGLGSELIELNRLLL 276 (438)
T ss_pred ccccc--cccccc-------------------ccc--ccc-------cccCcceEE---EecCCccccchhhhhHHHHHH
Confidence 00000 000000 000 000 000111122 2345542111 1 14566
Q ss_pred HHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcCc
Q psy702 190 LILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLK 267 (308)
Q Consensus 190 ~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~ 267 (308)
.++..+ +++|+|+||||+|++++.++|. ..+|++|+||+++..+++.+. .+ ...+..++.+.+.|
T Consensus 277 ~~i~~A--~~~i~i~~pYf~~~~~~~~al~~a~~~Gv~V~ii~~~~~~~d~~~----------~~-~~~~~~~~~l~~~g 343 (438)
T COG1502 277 KAINSA--RESILIATPYFVPDRELLAALKAAARRGVDVRIIIPSLGANDSAI----------VH-AAYRAYLKELLEAG 343 (438)
T ss_pred HHHHhh--ceEEEEEcCCcCCCHHHHHHHHHHHhcCCEEEEEeCCCCCCChHH----------HH-HHHHHHHHHHHHhC
Confidence 777788 8999999999999999999887 569999999999876666442 11 45567777788899
Q ss_pred eEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 268 VAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 268 v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+++|||. +|+.+|+|++|+| +.+++|||+||+.
T Consensus 344 v~i~~~~-~g~~lH~K~~iiD------~~~~~vGS~N~~~ 376 (438)
T COG1502 344 VKVYEYP-GGAFLHSKVMIID------DRTVLVGSANLDP 376 (438)
T ss_pred CEEEEec-CCCcceeeEEEEc------CCEEEEeCCcCCH
Confidence 9999994 2379999999998 4689999999984
No 4
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.87 E-value=5.9e-21 Score=187.82 Aligned_cols=223 Identities=17% Similarity=0.173 Sum_probs=150.1
Q ss_pred hhhhHHHHHhcCCceEEEEeeCCCCcccccccCCCccccccCcceeEEEEecCc-EEeecccCCcCcccc-----cCcce
Q psy702 8 KTLLSPIVKQFSHNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNC-VIITGANLSGDYFTS-----RQDRY 81 (308)
Q Consensus 8 ~~~l~~l~~~~~~~v~i~LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~-viiSGANLs~~Yftn-----RqDRY 81 (308)
...+..|.+ .+|+|..|+.+. + + ...|. ..++.+|.|+.|+|++ .++.|+|++++|+.. ++|--
T Consensus 78 ~~~~~~L~~---aGv~v~~~~p~~-~-~----~~~~~-~~~~R~HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~ 147 (411)
T PRK11263 78 DEFVNELTA---AGVRFRYFDPRP-R-L----LGMRT-NLFRRMHRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYA 147 (411)
T ss_pred HHHHHHHHH---CCeEEEEeCCcc-c-c----ccccc-ccccCCcceEEEEcCCEEEEcCeEchHhhccccCCCCceEEE
Confidence 344444542 468888886542 1 1 11121 2458999999999998 577789999999864 79999
Q ss_pred EEecCcchHHHHHHHHHHHHhccceeecCCCccccCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCC
Q psy702 82 MIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALS 161 (308)
Q Consensus 82 ~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (308)
+.|++ |.+++....+.+.|..- ..... .|+..+. .....
T Consensus 148 v~i~G-p~V~~l~~~f~~~w~~~------~~~~~---~~~~~~~-----------------------~~~~~-------- 186 (411)
T PRK11263 148 VEVEG-PVVADIHQFELEALPGQ------SAARR---WWRRHHR-----------------------AEENR-------- 186 (411)
T ss_pred EEEEC-HHHHHHHHHHHHHHhhc------ccchh---hhccccc-----------------------CcccC--------
Confidence 99999 88888888777776211 00000 0100000 00000
Q ss_pred CCCCCCeEEEEeecCCCCCCCCc-HHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCC
Q psy702 162 STQPPDTWLAPLIELPPLHIQLD-SRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGF 238 (308)
Q Consensus 162 ~~~~~dt~v~P~~q~G~~~i~~d-~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF 238 (308)
..++..+.+ +.-||.....+ ++.+..++.+| +++|+|+||||.|+..++++|. +++||+|+||+++.. |.
T Consensus 187 ~~g~~~~~~---v~~~p~~~~~~i~~~~~~~i~~A--~~~I~I~tpYf~p~~~l~~aL~~Aa~RGV~V~ii~~~~~-d~- 259 (411)
T PRK11263 187 QPGEAQALL---VWRDNEEHRDDIERHYLKALRQA--RREVIIANAYFFPGYRLLRALRNAARRGVRVRLILQGEP-DM- 259 (411)
T ss_pred CCCCeEEEE---EECCCcchHHHHHHHHHHHHHHh--ceEEEEEecCcCCCHHHHHHHHHHHHCCCEEEEEeCCCC-Cc-
Confidence 111112222 34555321111 24566777777 8999999999999999999887 579999999998752 42
Q ss_pred CCCcccccChhHHHHHHHHHHHHHhhcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 239 LGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 239 ~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
|.++ .+++.+++.+++.||+|+|| .+.++|+|.+++| ..+++|||+||+.
T Consensus 260 ----------~~~~-~a~~~~~~~Ll~~Gv~I~~y--~~~~lHaK~~viD------~~~~~vGS~Nld~ 309 (411)
T PRK11263 260 ----------PIVR-VGARLLYNYLLKGGVQIYEY--CRRPLHGKVALMD------DHWATVGSSNLDP 309 (411)
T ss_pred ----------HHHH-HHHHHHHHHHHHCCCEEEEe--cCCCceeEEEEEC------CCEEEEeCCcCCH
Confidence 3333 46778889999999999999 4669999999998 2589999999984
No 5
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.84 E-value=8.6e-20 Score=183.04 Aligned_cols=196 Identities=15% Similarity=0.183 Sum_probs=136.7
Q ss_pred cccCcceeEEEEecCcEEe-ecccCCc-Ccccc------cCcceEEecCcchHHHHHHHHHHHHhccceeecCCCccccC
Q psy702 46 ELIGLQHMKFYLIDNCVII-TGANLSG-DYFTS------RQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILD 117 (308)
Q Consensus 46 E~~Gv~H~K~yvfDd~vii-SGANLs~-~Yftn------RqDRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~ 117 (308)
...+.+|.|++|+|+.+.+ .|+|+++ +|++. +.|--+.+++ +.+++.-..|.++|... .+.....
T Consensus 215 ~~n~RnHrKi~VIDg~ia~~Gg~Ni~d~~y~~~~~~~~~w~D~~~~i~G-p~v~~l~~~F~~dW~~~-----~~~~~~~- 287 (483)
T PRK01642 215 RLDLRNHRKIVVIDGYIAYTGSMNVVDPEYFKQDPGVGQWRDTHVRIEG-PVVTALQLIFAEDWEWE-----TGERILP- 287 (483)
T ss_pred ccccccCceEEEEcCCEEEeCCcccCCHHHhCCCCCCCCcEEEEEEEEc-HHHHHHHHHHHHHHHHH-----hCcccCC-
Confidence 3457899999999999655 5799999 99964 5777899999 88888888888887321 1110000
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEEeecCCCCCCC-CcHHHHHHHHHhcC
Q psy702 118 KEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQ-LDSRVTKLILSLAR 196 (308)
Q Consensus 118 ~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~-~d~~~~~~ll~~~~ 196 (308)
..+ .+.. .+ .. ..++..+.++| .||..-. .-++++.+++..|
T Consensus 288 -~~~--~~~~------------------~~----~~--------~~~~~~~qi~~---sgP~~~~~~~~~~~~~~I~~A- 330 (483)
T PRK01642 288 -PPP--DVLI------------------MP----FE--------EASGHTVQVIA---SGPGDPEETIHQFLLTAIYSA- 330 (483)
T ss_pred -CCc--cccc------------------CC----cc--------CCCCceEEEEe---CCCCChhhHHHHHHHHHHHHh-
Confidence 000 0000 00 00 11122455553 5775211 0113455667777
Q ss_pred CCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcCceEEEEEc
Q psy702 197 DGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYV 274 (308)
Q Consensus 197 ~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~ 274 (308)
+++|+|+||||+|++++.++|. +.+||+|+||+++. .|.+. . ....+++++++.+.||++++|
T Consensus 331 -~~~I~I~tpYfip~~~i~~aL~~Aa~rGV~Vril~p~~-~d~~~-----------~-~~~~~~~~~~L~~~Gv~I~~y- 395 (483)
T PRK01642 331 -RERLWITTPYFVPDEDLLAALKTAALRGVDVRIIIPSK-NDSLL-----------V-FWASRAFFTELLEAGVKIYRY- 395 (483)
T ss_pred -ccEEEEEcCCcCCCHHHHHHHHHHHHcCCEEEEEeCCC-CCcHH-----------H-HHHHHHHHHHHHHcCCEEEEe-
Confidence 8999999999999999999887 57999999999975 34322 1 346788899999999999999
Q ss_pred cCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 275 RSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 275 r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
.+.+.|||.+++| ..+++|||+||+.
T Consensus 396 -~~~~~HaK~~ivD------~~~~~vGS~N~d~ 421 (483)
T PRK01642 396 -EGGLLHTKSVLVD------DELALVGTVNLDM 421 (483)
T ss_pred -CCCceEeEEEEEC------CCEEEeeCCcCCH
Confidence 4559999999998 3689999999974
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.83 E-value=2.2e-19 Score=181.13 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=145.8
Q ss_pred CceEEEEeeCCCCcccccccCCCccccccCcceeEEEEecCcEEe-ecccCCcCcccc------cCcceEEecCcchHHH
Q psy702 20 HNCHVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVII-TGANLSGDYFTS------RQDRYMIIQDHKPLSD 92 (308)
Q Consensus 20 ~~v~i~LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~vii-SGANLs~~Yftn------RqDRY~~i~~~~~lad 92 (308)
.+|+|..|..+... + ...+. ...+|.|++|+|+.+.+ .|+|++++|+.. +.|--+.+++ +.+.+
T Consensus 219 aGi~v~~f~P~~~~-~----~~~~~---n~RnHRKi~VIDg~ia~~GG~Ni~d~y~~~~~~~~~WrD~~~~i~G-p~V~~ 289 (509)
T PRK12452 219 AGIEIVEFDPIFSA-W----LLETV---NYRNHRKIVIVDGEIGFTGGLNVGDEYLGRSKKFPVWRDSHLKVEG-KALYK 289 (509)
T ss_pred CCeEEEEecCcccc-c----ccccc---cCCCCCeEEEEcCCEEEeCCcccchhhcCCCCCCCCceEEEEEEEC-HHHHH
Confidence 45888888654221 1 12222 35689999999999755 579999999876 6888889999 99999
Q ss_pred HHHHHHHHHhccceeecCCCccccCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEE
Q psy702 93 FFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAP 172 (308)
Q Consensus 93 ~~~~lv~~v~~~S~~l~~~~~~~~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P 172 (308)
.-..|.++|...+-... ...|. +.... +... ..+. ..+...+.++
T Consensus 290 l~~~F~~dW~~~~~~~~-------~~~~~--~~~~~------------------~~~~-~~~~------~~~~~~~q~~- 334 (509)
T PRK12452 290 LQAIFLEDWLYASSGLN-------TYSWD--PFMNR------------------QYFP-GKEI------SNAEGAVQIV- 334 (509)
T ss_pred HHHHHHHHHHHhhCccc-------ccccc--cccch------------------hcCC-Cccc------cCCCeEEEEE-
Confidence 99999999832211000 00010 00000 0000 0000 0111123333
Q ss_pred eecCCCCCCCCcHH---HHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccC
Q psy702 173 LIELPPLHIQLDSR---VTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGG 247 (308)
Q Consensus 173 ~~q~G~~~i~~d~~---~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~ 247 (308)
..||.. .++. .+..++.+| +++|+|+||||.|++.+.++|. +.+||+|+||+++. .|.+.
T Consensus 335 --~sgp~~--~~~~i~~~~l~~I~~A--~~~I~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~~-~D~~~-------- 399 (509)
T PRK12452 335 --ASGPSS--DDKSIRNTLLAVMGSA--KKSIWIATPYFIPDQETLTLLRLSAISGIDVRILYPGK-SDSII-------- 399 (509)
T ss_pred --eCCCCc--hhHHHHHHHHHHHHHh--hhEEEEECCccCCCHHHHHHHHHHHHcCCEEEEEcCCC-CChHH--------
Confidence 567742 2223 344556666 8999999999999999999887 56999999999975 35432
Q ss_pred hhHHHHHHHHHHHHHhhcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 248 IPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 248 IP~~Y~~~~~~f~~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
. ..+.+.+++++.++||+++||+ +.+.|+|.+.+| ..+++|||+|++.
T Consensus 400 ---~-~~a~~~~~~~L~~aGv~I~~y~--~~~lHaK~~ivD------~~~a~vGS~Nld~ 447 (509)
T PRK12452 400 ---S-DQASQSYFTPLLKAGASIYSYK--DGFMHAKIVLVD------DKIATIGTANMDV 447 (509)
T ss_pred ---H-HHHHHHHHHHHHHcCCEEEEec--CCCeeeeEEEEC------CCEEEEeCcccCH
Confidence 2 2467888999999999999994 569999999998 3689999999974
No 7
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.76 E-value=8.6e-17 Score=159.00 Aligned_cols=200 Identities=16% Similarity=0.147 Sum_probs=126.0
Q ss_pred CcceeEEEEecCc-EEeecccCCcCcccccCcceEEecCcchHHHHH-HHHHHHHhccceeecCCCccccCCCCCCC-CC
Q psy702 49 GLQHMKFYLIDNC-VIITGANLSGDYFTSRQDRYMIIQDHKPLSDFF-DDLSRVLCKISFQLTPDGKFILDKEFPLS-PV 125 (308)
Q Consensus 49 Gv~H~K~yvfDd~-viiSGANLs~~YftnRqDRY~~i~~~~~lad~~-~~lv~~v~~~S~~l~~~~~~~~~~~~~~~-p~ 125 (308)
|..|.|+.|+|+. +.+.|||+...||+.-.|-=+.+.++++++.-+ ..|...|. +..+ . ....|+.. |.
T Consensus 112 ~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n~E~gv~i~~~g~~v~~L~~~F~~dW~-----~~~~-~--~~~~~~~~~~~ 183 (424)
T PHA02820 112 GVLHTKFWISDNTHIYLGSANMDWRSLTQVKELGIAIFNNSNLAADLTQIFEVYWY-----LGVN-N--LPYNWKNFYPL 183 (424)
T ss_pred ccceeeEEEECCCEEEEeCCcCChhhhhhCCceEEEEecchHHHHHHHHHHHHHHH-----hhcc-C--CCCcccccccc
Confidence 7899999999997 577789999999987667556677656655444 45555552 1111 1 11112100 10
Q ss_pred CcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEEeecCCCC---CC--CCcHHHHHHHHHhcCCCCE
Q psy702 126 SVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPL---HI--QLDSRVTKLILSLARDGSC 200 (308)
Q Consensus 126 ~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P~~q~G~~---~i--~~d~~~~~~ll~~~~~~~~ 200 (308)
. | .. ....... ..+.. ..++ +..+|. .. ..|.+++..+|.+| +++
T Consensus 184 ~------~------------~~----~~p~~~~---~~~~~-~~~~--~sssP~~~~~~~r~~~~~~~l~~I~~A--k~~ 233 (424)
T PHA02820 184 Y------Y------------NT----DHPLSLN---VSGVP-HSVF--IASAPQQLCTMERTNDLTALLSCIRNA--SKF 233 (424)
T ss_pred c------c------------cc----CCCcccc---cCCcc-ceEE--EeCCChhhcCCCCCchHHHHHHHHHHH--hhE
Confidence 0 0 00 0000000 01111 1222 233332 11 34678889999999 899
Q ss_pred EEEEecCCCCC-----------HHHHHHHH--c-CCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcC
Q psy702 201 VSLGTGYFNLT-----------QEYVRAML--D-KPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNL 266 (308)
Q Consensus 201 l~i~TpYFn~~-----------~~~~~~L~--~-~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~ 266 (308)
|+|+||||.|+ +.+.+||. + .|||+|+||++.. .+..+. ....++.+++|.+.
T Consensus 234 I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~-~d~~~~------------~~a~~~~l~~L~~~ 300 (424)
T PHA02820 234 VYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCW-QRSSFI------------MRNFLRSIAMLKSK 300 (424)
T ss_pred EEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEecc-CCCCcc------------HHHHHHHHHHHhcc
Confidence 99999999999 79999886 2 5999999999985 354332 23555667777666
Q ss_pred ceEE----EEEc-------cCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 267 KVAM----FEYV-------RSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 267 ~v~i----~Ey~-------r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
||+| ++|. . +-+.|||-+.+| .++.||||||+.
T Consensus 301 gv~I~Vk~y~~p~~~~~~~~-~~f~HaK~~vvD-------~~a~IGTsN~D~ 344 (424)
T PHA02820 301 NINIEVKLFIVPDADPPIPY-SRVNHAKYMVTD-------KTAYIGTSNWTG 344 (424)
T ss_pred CceEEEEEEEcCcccccCCc-ceeeeeeEEEEc-------ccEEEECCcCCH
Confidence 6555 6563 1 349999999997 359999999973
No 8
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.59 E-value=1.4e-13 Score=134.06 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhcCCCCEEEEEecCCCCC----------HHHHHHHH--c-CCCCcEEEEecCcCCCCCCCCcccccChhH
Q psy702 184 DSRVTKLILSLARDGSCVSLGTGYFNLT----------QEYVRAML--D-KPRVNYSVLMAHPTANGFLGARGAAGGIPY 250 (308)
Q Consensus 184 d~~~~~~ll~~~~~~~~l~i~TpYFn~~----------~~~~~~L~--~-~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~ 250 (308)
+.+.+..+|..| +++|+|+|+||.|. +.+.++|+ + ++||+|+||+++....+.
T Consensus 217 ~~~~ll~~I~~A--k~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~~~~------------ 282 (369)
T PHA03003 217 DADVVLHKIKSA--KKSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKKNDV------------ 282 (369)
T ss_pred CHHHHHHHHHHH--hhEEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCcCCc------------
Confidence 457788888888 89999999999886 48888886 3 699999999986532211
Q ss_pred HHHHHHHHHHHHhhcCc------eEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 251 AYTALAARFLSRVSNLK------VAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 251 ~Y~~~~~~f~~~l~~~~------v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
..+.+++.|.+.| |++++|. .|+|.+.+| ..++.|||+||+
T Consensus 283 ----~~~~~~~~L~~~G~~~~i~vri~~~~-----~H~K~~VVD------~~~a~iGS~N~d 329 (369)
T PHA03003 283 ----YSMASVKSLQALCVGNDLSVKVFRIP-----NNTKLLIVD------DEFAHITSANFD 329 (369)
T ss_pred ----hhhhHHHHHHHcCCCCCceEeeecCC-----CCceEEEEc------CCEEEEeccccC
Confidence 1334677777788 8888873 799999998 368999999996
No 9
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.08 E-value=1.6e-09 Score=93.35 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCC-----CHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHH
Q psy702 185 SRVTKLILSLARDGSCVSLGTGYFNL-----TQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAA 257 (308)
Q Consensus 185 ~~~~~~ll~~~~~~~~l~i~TpYFn~-----~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~ 257 (308)
.+.+..+|.+| +++|+|+++||++ .+.+.++|. .++|++|+||+.+...+.+ ....
T Consensus 23 ~~~i~~~I~~A--~~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~---------------~~~~ 85 (176)
T cd00138 23 LDALLEAISNA--KKSIYIASFYLSPLITEYGPVILDALLAAARRGVKVRILVDEWSNTDL---------------KISS 85 (176)
T ss_pred HHHHHHHHHhh--heEEEEEEeEecccccccchHHHHHHHHHHHCCCEEEEEEcccccCCc---------------hHHH
Confidence 35566777777 7899999999998 888888777 5689999999998864432 1233
Q ss_pred HHHHHhhc---CceEEEEEccCC---ceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 258 RFLSRVSN---LKVAMFEYVRSG---WTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 258 ~f~~~l~~---~~v~i~Ey~r~g---wtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
.+++.+.+ .+++++.+...+ +.+|+|.+++| ...++|||+|+..
T Consensus 86 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~H~K~~iiD------~~~~~vGS~N~~~ 135 (176)
T cd00138 86 AYLDSLRALLDIGVRVFLIRTDKTYGGVLHTKLVIVD------DETAYIGSANLDG 135 (176)
T ss_pred HHHHHHHHhhcCceEEEEEcCCcccccceeeeEEEEc------CCEEEEECCcCCh
Confidence 44455533 389999886543 89999999998 2589999999964
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=101.04 Aligned_cols=94 Identities=16% Similarity=0.148 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCCCH--------HHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHH
Q psy702 185 SRVTKLILSLARDGSCVSLGTGYFNLTQ--------EYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTA 254 (308)
Q Consensus 185 ~~~~~~ll~~~~~~~~l~i~TpYFn~~~--------~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~ 254 (308)
.++...++..| +++|+|+|+||.|++ .+.++|. +++||+|+||+.+. ++ |.
T Consensus 28 ~~~~~~lI~~A--k~~I~I~s~yf~~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~d~~---~~----------~~---- 88 (424)
T PHA02820 28 FNFWREILSNT--TKTLDISSFYWSLSDEVGTNFGTMILNEIIQLPKRGVRVRIAVNKS---NK----------PL---- 88 (424)
T ss_pred HHHHHHHHHhh--CcEEEEEeEEEecCccccchhHHHHHHHHHHHHHCCCEEEEEECCC---CC----------ch----
Confidence 35667788888 899999999999754 4777776 46999999999842 21 11
Q ss_pred HHHHHHHHhhcCceEEEEEcc---CCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 255 LAARFLSRVSNLKVAMFEYVR---SGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 255 ~~~~f~~~l~~~~v~i~Ey~r---~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
.++++|.++||++++|.. .+...|+|-+.+| ..+..|||+|++
T Consensus 89 ---~~~~~L~~aGv~v~~~~~~~~~~~~~HrK~~VID------g~~~~iGS~Nid 134 (424)
T PHA02820 89 ---KDVELLQMAGVEVRYIDITNILGGVLHTKFWISD------NTHIYLGSANMD 134 (424)
T ss_pred ---hhHHHHHhCCCEEEEEecCCCCcccceeeEEEEC------CCEEEEeCCcCC
Confidence 224567779999999852 2347999999998 368999999997
No 11
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=98.84 E-value=1.7e-08 Score=82.18 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=57.7
Q ss_pred HHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcC
Q psy702 189 KLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNL 266 (308)
Q Consensus 189 ~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~ 266 (308)
..+|.+| +.+|+|++|||. .+++.++|. .++|++|+||+.+..... +... ......+.+.+...
T Consensus 2 ~~~i~~A--~~~i~i~~~~~~-~~~i~~~l~~~~~~gv~v~ii~~~~~~~~--------~~~~---~~~~~~~~~~~~~~ 67 (126)
T PF13091_consen 2 IDLIKSA--QKSIWIASPYIT-DPDIIKALLDAAKRGVKVRIIVDSNQDDS--------EAIN---LASLKELRELLKNA 67 (126)
T ss_dssp HHHHHT---SSEEEEEESSS--SCHHHHHHHHHHHTT-EEEEEEECGGGHH--------CCCS---HHHHHHHHHHHHHT
T ss_pred HHHHhcc--CCEEEEEEEecC-cHHHHHHHHHHHHCCCeEEEEECCCcccc--------chhh---hHHHHHHHhhhccc
Confidence 4577777 799999999994 445566555 568999999999865310 0001 12233333333678
Q ss_pred ceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 267 KVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 267 ~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+++++ + .+|+|.+++| + ...+|||+||+.
T Consensus 68 ~i~v~-----~-~~H~K~~i~d---~---~~~iiGS~N~t~ 96 (126)
T PF13091_consen 68 GIEVR-----N-RLHAKFYIID---D---KVAIIGSANLTS 96 (126)
T ss_dssp THCEE-----S--B--EEEEET---T---TEEEEES--CSC
T ss_pred eEEEe-----c-CCCcceEEec---C---ccEEEcCCCCCc
Confidence 88888 3 9999999997 2 479999999974
No 12
>PRK05443 polyphosphate kinase; Provisional
Probab=98.51 E-value=1.8e-06 Score=90.30 Aligned_cols=158 Identities=13% Similarity=0.162 Sum_probs=102.2
Q ss_pred cceeEEEEecCc--------EEeecccCCcCcccccCcceEEecCcchHHHHHHHHHHHHhccceeecCCCccccCCCCC
Q psy702 50 LQHMKFYLIDNC--------VIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFP 121 (308)
Q Consensus 50 v~H~K~yvfDd~--------viiSGANLs~~YftnRqDRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~~~~~ 121 (308)
..|.|+.++|+. +.++++|+++.++.--.|==.+..| ++++.=+..+...+..++
T Consensus 433 k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y~D~~l~t~d-~~i~~d~~~~F~~l~~~~---------------- 495 (691)
T PRK05443 433 KTHAKLALVVRREGGGLRRYVHLGTGNYNPKTARLYTDLSLLTAD-PEIGEDVTRLFNYLTGYS---------------- 495 (691)
T ss_pred cceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhccceeEEEeC-hHHHHHHHHHHHHHhCcC----------------
Confidence 579999999998 7899999999998877775555566 666555555544431100
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEEeecCCCCCCCCcHHH---HHHHHHhc--C
Q psy702 122 LSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSRV---TKLILSLA--R 196 (308)
Q Consensus 122 ~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~~d~~~---~~~ll~~~--~ 196 (308)
.|. .-...++. |.+. .+.+ +...+..| +
T Consensus 496 -~~~--------------------------------------~~~~l~~s------P~~~--~~~l~~~i~~ei~~Ak~G 528 (691)
T PRK05443 496 -RPV--------------------------------------KLRKLLVS------PFTL--RERLLELIDREIANARAG 528 (691)
T ss_pred -ccc--------------------------------------cccEEeec------CccH--HHHHHHHHHHHHHHHhcC
Confidence 000 00012222 3221 2222 33444455 3
Q ss_pred CCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEe----------cCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 197 DGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLM----------AHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 197 ~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~----------asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
+..+|+|.++| .+++.++++|. +.+||+|+||+ ++.. +.... ++++++++
T Consensus 529 ~~a~I~ik~n~-l~d~~ii~aL~~As~~GV~V~liVRGiC~l~pgipg~s-d~i~v----------------~s~v~r~L 590 (691)
T PRK05443 529 KPARIIAKMNS-LVDPQIIDALYEASQAGVKIDLIVRGICCLRPGVPGLS-ENIRV----------------RSIVGRFL 590 (691)
T ss_pred CCCEEEEEcCC-CCCHHHHHHHHHHHHCCCeEEEEEecccccCCCCCCCC-CCEEE----------------HHHHHHHH
Confidence 35599999999 66999999888 57999999999 6664 33221 35666766
Q ss_pred cCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 265 NLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 265 ~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+ +++||+|.+ | + ...+.|||+||+.
T Consensus 591 e-h~rIy~f~~-g----------d------~~~~~iGSAn~d~ 615 (691)
T PRK05443 591 E-HSRIYYFGN-G----------G------DEEVYISSADWMP 615 (691)
T ss_pred h-cCEEEEEeC-C----------C------CcEEEEECCCCCc
Confidence 6 489999953 3 2 2478999999974
No 13
>PRK13912 nuclease NucT; Provisional
Probab=98.41 E-value=2.4e-06 Score=75.03 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHh
Q psy702 186 RVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRV 263 (308)
Q Consensus 186 ~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l 263 (308)
..+..++.+| +++|+|++ |+..++++.++|. .++|++|+||+.+..+.+. .... + .++.+.
T Consensus 36 ~~l~~~I~~A--k~sI~i~~-Y~~~~~~i~~aL~~Aa~RGV~VrIlld~~~~~~~-----~~~~-------~--~~l~~~ 98 (177)
T PRK13912 36 NKLVSLISNA--RSSIKIAI-YSFTHKDIAKALKSAAKRGVKISIIYDYESNHNN-----DQST-------I--GYLDKY 98 (177)
T ss_pred HHHHHHHHhc--ccEEEEEE-EEEchHHHHHHHHHHHHCCCEEEEEEeCccccCc-----chhH-------H--HHHHhC
Confidence 4566777777 78999985 8888999999887 5799999999987642211 0000 0 011111
Q ss_pred hcCceEEEEEc-------cCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 264 SNLKVAMFEYV-------RSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 264 ~~~~v~i~Ey~-------r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
.++++..+. ......|+|.+++| ..+.++||.||+
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~H~K~~viD------~~~~~iGS~N~t 140 (177)
T PRK13912 99 --PNIKVCLLKGLKAKNGKYYGIMHQKVAIID------DKIVVLGSANWS 140 (177)
T ss_pred --CCceEEEecCccccCcccccccceeEEEEc------CCEEEEeCCCCC
Confidence 233333321 12237899999997 368999999997
No 14
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=98.32 E-value=2.5e-06 Score=73.43 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=46.5
Q ss_pred cCcceeEEEEecCc-EEeecccCCcCcccccCcceEEecCcc-hHHHHHHHHHHHH
Q psy702 48 IGLQHMKFYLIDNC-VIITGANLSGDYFTSRQDRYMIIQDHK-PLSDFFDDLSRVL 101 (308)
Q Consensus 48 ~Gv~H~K~yvfDd~-viiSGANLs~~YftnRqDRY~~i~~~~-~lad~~~~lv~~v 101 (308)
.+.+|.|++|||++ ++++|+|++..+|.+..|+.+++++++ ..+++...|-..|
T Consensus 111 ~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~~~e~~~~~~~~~~~~~~~~~~f~~~w 166 (176)
T cd00138 111 GGVLHTKLVIVDDETAYIGSANLDGRSLTLNSEVGVVIYDPASLAADLKASLERDW 166 (176)
T ss_pred ccceeeeEEEEcCCEEEEECCcCChhhhhhhcceEEEEeChHHHHHHHHHHHHHHH
Confidence 58999999999995 888999999999999999999999944 4566666666666
No 15
>KOG3603|consensus
Probab=98.31 E-value=3.2e-05 Score=75.83 Aligned_cols=246 Identities=16% Similarity=0.184 Sum_probs=132.4
Q ss_pred hhhHHHHHhcCCceEEEEeeCCCCcccccc-------c-----CCCccccc--cCcceeEEEEecCc-EEeecccCCcCc
Q psy702 9 TLLSPIVKQFSHNCHVSFYHTPDLRWPLNR-------L-----LPHRYNEL--IGLQHMKFYLIDNC-VIITGANLSGDY 73 (308)
Q Consensus 9 ~~l~~l~~~~~~~v~i~LyhtP~l~g~~~~-------~-----~P~r~nE~--~Gv~H~K~yvfDd~-viiSGANLs~~Y 73 (308)
.++..|...=.++|.|++=.+=.-.+-.+. . --..+++. =|++|.|..++|+. .-+.|||+---=
T Consensus 114 ~vy~~L~~~~~~gIsiriA~~~p~~~~~~~d~~~Le~~Gaa~vr~id~~~l~g~GvlHtKf~vvD~khfylGSaNfDWrS 193 (456)
T KOG3603|consen 114 QVYNTLLALAKSGVKIRIAQSYPSGGPPNADLQVLESLGLAQVRSIDMNRLTGGGVLHTKFWVVDIKHFYLGSANFDWRS 193 (456)
T ss_pred HHHHHHHHhccCCeEEEEEeecCCCCCCcccHHHHHhCCCceEEeecccccccCceEEEEEEEEecceEEEeccccchhh
Confidence 455566655456677776543222211110 0 00123333 49999999999997 777789999888
Q ss_pred ccccCcceEEecCcchHHHHHHHHHHHHhccceeecCCCccccCCCCCCCCCCcchhhHHHHHHHHHHHHhhhccccccc
Q psy702 74 FTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNT 153 (308)
Q Consensus 74 ftnRqDRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~ 153 (308)
+|+-.--=.+++||+.||.=+.++.+.. +.+...+++. .+.|+.. |. ..+-.+.
T Consensus 194 lTqvkElGv~v~NCpclakDL~kiFe~y----W~lg~~~s~~-p~~wp~~---------~s------------t~~N~~~ 247 (456)
T KOG3603|consen 194 LTQVKELGVVVRNCPCLAKDLKKIFERY----WYLGNAKSLI-PKKWPNC---------YS------------THYNKPL 247 (456)
T ss_pred ccceeEeeeEEecChhHHHHHHHHHHHH----hcCCCCCccC-CCCCccc---------cc------------ccccccC
Confidence 9998888899999999998888887774 2333333332 3344311 10 0000000
Q ss_pred ccCCCCCCCCCCCCeEEEEe-ecCCCCCCCCcHHHHHHHHHhcCCCCEEEEE-------ecCCCC------CHHHHHHHH
Q psy702 154 TAVSPALSSTQPPDTWLAPL-IELPPLHIQLDSRVTKLILSLARDGSCVSLG-------TGYFNL------TQEYVRAML 219 (308)
Q Consensus 154 ~~~~~~~~~~~~~dt~v~P~-~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~-------TpYFn~------~~~~~~~L~ 219 (308)
..+ -.+ .....+..+.-. -.+-|-+-..|-+.+.+.+..| ++-|+|+ +=|+++ ++++.+|..
T Consensus 248 p~~-~~~-dg~~~~~y~saSP~~~~~~grt~DL~ail~~i~~A--~~fv~isVMdY~Ps~~y~k~~~fw~iDdaiR~aa~ 323 (456)
T KOG3603|consen 248 PMK-IAV-DGTPATPYISASPPPLNPSGRTWDLEAILNTIDEA--QKFVYISVMDYFPSTIYSKNHRFWEIDDAIRRAAV 323 (456)
T ss_pred cce-eec-CCCCcceEEccCCCCCCCCCCchhHHHHHHHHHHH--hhheeeeehhccchheeecCcchhhhhHHHHHHhh
Confidence 000 000 001112222100 0111223345666677777777 5555553 445544 445555433
Q ss_pred cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHh----hcCceEEEEEccC---------CceEEeeEEE
Q psy702 220 DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRV----SNLKVAMFEYVRS---------GWTYHAKGLW 286 (308)
Q Consensus 220 ~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l----~~~~v~i~Ey~r~---------gwtfHaKGlw 286 (308)
||++|++|++.=. + . -.+..|.+++ +..| .+..|++.-+.-| +--.|+|-|.
T Consensus 324 --RgV~vR~lvs~~~-~---~---~~~m~~~L~S------Lq~l~~~~~~~~iqvk~f~VP~~~~~~ip~~Rv~HnKymV 388 (456)
T KOG3603|consen 324 --RGVKVRLLVSCWK-H---S---EPSMFRFLRS------LQDLSDPLENGSIQVKFFIVPQTNIEKIPFARVNHNKYMV 388 (456)
T ss_pred --cceEEEEEEeccC-C---C---CchHHHHHHH------HHHhcCccccCceEEEEEEeCCCccccCchhhhccceeEE
Confidence 9999999999432 2 1 1222333333 1222 2223444433322 2357999998
Q ss_pred EecCCCCCCcEEEEeCCCCC
Q psy702 287 YSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 287 i~~~~~~~p~~t~IGSsNf~ 306 (308)
-. ..+.||+||++
T Consensus 389 Te-------~aayIGTSNws 401 (456)
T KOG3603|consen 389 TE-------SAAYIGTSNWS 401 (456)
T ss_pred ee-------cceeeeccCCC
Confidence 75 68999999996
No 16
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.11 E-value=1.4e-05 Score=79.19 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=69.2
Q ss_pred HHHHhcCCCCEEEEEecCCCCC---HHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 190 LILSLARDGSCVSLGTGYFNLT---QEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 190 ~ll~~~~~~~~l~i~TpYFn~~---~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
..|..| +++|+|.|.||-.+ +.+.++|+ +++||+|+|++.+..+. . ..+.|+++|.
T Consensus 25 ~~I~~A--k~~I~i~~yi~~~d~~g~~l~~aL~~aa~rGV~Vril~D~~gs~------~-----------~~~~~~~~L~ 85 (411)
T PRK11263 25 EAIAAA--QEEILLETFILFEDKVGKQLHAALLAAAQRGVKVEVLVDGYGSP------D-----------LSDEFVNELT 85 (411)
T ss_pred HHHHHh--CCEEEEEEEEEecCchHHHHHHHHHHHHHCCCEEEEEEECCCCC------C-----------CCHHHHHHHH
Confidence 345555 89999999999765 56788776 46999999999754221 1 1345678888
Q ss_pred cCceEEEEEccCC----c------eEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 265 NLKVAMFEYVRSG----W------TYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 265 ~~~v~i~Ey~r~g----w------tfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.||+++.|.... | ..|.|-+.|| ..+..|||.|++
T Consensus 86 ~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVID------g~~a~vGg~N~~ 131 (411)
T PRK11263 86 AAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVID------GRIAFVGGINYS 131 (411)
T ss_pred HCCeEEEEeCCcccccccccccccCCcceEEEEc------CCEEEEcCeEch
Confidence 8999999995321 1 4699999998 368999999985
No 17
>PRK05443 polyphosphate kinase; Provisional
Probab=97.97 E-value=5.3e-05 Score=79.51 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHHHHHhcC--CC-CEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHH
Q psy702 187 VTKLILSLAR--DG-SCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLS 261 (308)
Q Consensus 187 ~~~~ll~~~~--~~-~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~ 261 (308)
-+..+++.|. |+ ..|.+|-=.+.-++.++++|. +++|++|+|++..+. .|- +.+...+++
T Consensus 352 ~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~ka--rfd-------------e~~n~~~~~ 416 (691)
T PRK05443 352 PVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKA--RFD-------------EEANIRWAR 416 (691)
T ss_pred HHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCc--ccc-------------HHHHHHHHH
Confidence 3445666662 22 256666666666899999888 568999999999873 222 346677788
Q ss_pred HhhcCceEE-EEEccCCceEEeeEEEEecC-CCCCCcEEEEeCCCCCC
Q psy702 262 RVSNLKVAM-FEYVRSGWTYHAKGLWYSES-PGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 262 ~l~~~~v~i-~Ey~r~gwtfHaKGlwi~~~-~~~~p~~t~IGSsNf~~ 307 (308)
+|.++||++ |.| +|+..|||-++|+.. ++....++.|||.||+.
T Consensus 417 ~L~~aGv~V~y~~--~~~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 417 RLEEAGVHVVYGV--VGLKTHAKLALVVRREGGGLRRYVHLGTGNYNP 462 (691)
T ss_pred HHHHcCCEEEEcc--CCccceeEEEEEEeecCCceeEEEEEcCCCCCc
Confidence 889999999 888 799999999999854 22234589999999984
No 18
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.89 E-value=0.00013 Score=76.45 Aligned_cols=83 Identities=8% Similarity=0.123 Sum_probs=59.4
Q ss_pred HHHHHhc--CCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEe----------cCcCCCCCCCCcccccChhHHHHH
Q psy702 189 KLILSLA--RDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLM----------AHPTANGFLGARGAAGGIPYAYTA 254 (308)
Q Consensus 189 ~~ll~~~--~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~----------asp~ANgF~~s~g~sg~IP~~Y~~ 254 (308)
...++.| ++..+|||++|| .+++.++++|. +++||+|++|+ ++.. +....
T Consensus 510 ~~ei~~Ak~g~~~~I~ik~n~-l~D~~ii~aL~~As~aGV~V~LivRGiCcL~pgipg~s-d~i~v-------------- 573 (672)
T TIGR03705 510 DREIENARAGKPARIIAKMNS-LVDPDLIDALYEASQAGVKIDLIVRGICCLRPGVPGLS-ENIRV-------------- 573 (672)
T ss_pred HHHHHHHHcCCCCEEEEEcCC-CCCHHHHHHHHHHHHCCCeEEEEEecccccCCCCCCCC-CCEEE--------------
Confidence 3444555 345699999999 55999999887 56999999999 7664 43221
Q ss_pred HHHHHHHHhhcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 255 LAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 255 ~~~~f~~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+++++++++ +++||+|..+| + ..+.|||+||..
T Consensus 574 --~siv~r~Le-h~rIy~f~~~~--------------d---~~~~igSAn~m~ 606 (672)
T TIGR03705 574 --RSIVGRFLE-HSRIYYFGNGG--------------E---EKVYISSADWMT 606 (672)
T ss_pred --EEEhhHhhC-cCEEEEEeCCC--------------C---cEEEEECCCCCC
Confidence 244666666 79999996332 2 478999999974
No 19
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.56 E-value=9e-05 Score=45.64 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.2
Q ss_pred cCcceeEEEEecCc-EEeecccCCcCc
Q psy702 48 IGLQHMKFYLIDNC-VIITGANLSGDY 73 (308)
Q Consensus 48 ~Gv~H~K~yvfDd~-viiSGANLs~~Y 73 (308)
-|++|.|++|+|+. ++++|||++..|
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 37899999999997 999999998765
No 20
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.08 E-value=0.00077 Score=41.42 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.3
Q ss_pred CceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 277 GWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 277 gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
++..|+|.+++| ..+.+|||+|++.
T Consensus 2 ~~~~H~K~~v~D------~~~~~iGs~N~~~ 26 (28)
T smart00155 2 DGVLHTKLMIVD------DEIAYIGSANLDG 26 (28)
T ss_pred CCcEEeEEEEEc------CCEEEEeCccCCC
Confidence 468999999998 3689999999974
No 21
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=97.07 E-value=0.0041 Score=60.81 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCC-----CCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHH
Q psy702 186 RVTKLILSLARDGSCVSLGTGYFN-----LTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAAR 258 (308)
Q Consensus 186 ~~~~~ll~~~~~~~~l~i~TpYFn-----~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~ 258 (308)
+.+.++|.+| +++|.|.+=||+ ....+.++|. +++|++|+||+-+.. .++
T Consensus 34 ~~l~~~I~~A--k~~I~i~~yi~~~~~d~~g~~i~~aL~~aa~rGV~Vril~D~~~---------------------~~~ 90 (369)
T PHA03003 34 ECFDEIISQA--KKYIYIASFCCNLRSTPEGRLILDKLKEAAESGVKVTILVDEQS---------------------GDK 90 (369)
T ss_pred HHHHHHHHhh--hhEEEEEEEEecccCCchHHHHHHHHHHhccCCCeEEEEecCCC---------------------CCc
Confidence 3445666677 899999999976 3456777776 468999999997421 134
Q ss_pred HHHHhhcCceEEEEEcc----CCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 259 FLSRVSNLKVAMFEYVR----SGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 259 f~~~l~~~~v~i~Ey~r----~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.++|++.||++..+.. +++.+|.|-+.+| .....+||.|++
T Consensus 91 ~~~~L~~~Gv~v~~~~~~~~~~~~~~~~k~~IiD------g~~~y~Gg~Ni~ 136 (369)
T PHA03003 91 DEEELQSSNINYIKVDIGKLNNVGVLLGSFWVSD------DRRCYIGNASLT 136 (369)
T ss_pred cHHHHHHcCCEEEEEeccccCCCCceeeeEEEEc------CcEEEEecCccC
Confidence 46777888999987752 1346799988887 367899999985
No 22
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=96.91 E-value=0.0017 Score=52.46 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=51.1
Q ss_pred hhhhHHHHHhcCCceEEEEeeCCCCc--cc--------ccccCCCccccccCcceeEEEEecCc-EEeecccCCcCcccc
Q psy702 8 KTLLSPIVKQFSHNCHVSFYHTPDLR--WP--------LNRLLPHRYNELIGLQHMKFYLIDNC-VIITGANLSGDYFTS 76 (308)
Q Consensus 8 ~~~l~~l~~~~~~~v~i~LyhtP~l~--g~--------~~~~~P~r~nE~~Gv~H~K~yvfDd~-viiSGANLs~~Yftn 76 (308)
..++..|.+.-..+|+|.+.-..... +. +..+++.---|+-+.+|.|.|+|||+ +++++||++...|..
T Consensus 22 ~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~H~K~~i~d~~~~iiGS~N~t~~~~~~ 101 (126)
T PF13091_consen 22 PDIIKALLDAAKRGVKVRIIVDSNQDDSEAINLASLKELRELLKNAGIEVRNRLHAKFYIIDDKVAIIGSANLTSSSFRR 101 (126)
T ss_dssp CHHHHHHHHHHHTT-EEEEEEECGGGHHCCCSHHHHHHHHHHHHHTTHCEES-B--EEEEETTTEEEEES--CSCCCSCT
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCccccchhhhHHHHHHHhhhccceEEEecCCCcceEEecCccEEEcCCCCCcchhcC
Confidence 34455555544566777777665322 10 11111111111127999999999976 888889999999988
Q ss_pred cCcceEEecCcchHHHHHHHH
Q psy702 77 RQDRYMIIQDHKPLSDFFDDL 97 (308)
Q Consensus 77 RqDRY~~i~~~~~lad~~~~l 97 (308)
-.+--+.+++ +++++-+.+.
T Consensus 102 n~E~~~~~~~-~~~~~~~~~~ 121 (126)
T PF13091_consen 102 NYELGVIIDD-PELVKELIRE 121 (126)
T ss_dssp SEEEEEEEEC-HHHHHHHHHH
T ss_pred CcceEEEEEC-HHHHHHHHHH
Confidence 8899999999 6655554443
No 23
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=96.84 E-value=0.007 Score=61.28 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred HHHHhcCCCCEEEEEecCCCCC---HHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 190 LILSLARDGSCVSLGTGYFNLT---QEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 190 ~ll~~~~~~~~l~i~TpYFn~~---~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
+.+++| +++|+|.+=.|..+ +.+.++|. +++|++|+||+-+-.+.++ ..+.+++++.
T Consensus 133 ~~I~~A--k~~I~l~~yi~~~d~~g~~i~~aL~~aa~rGV~VriL~D~~Gs~~~----------------~~~~~~~~L~ 194 (483)
T PRK01642 133 RDIELA--RHYILMEFYIWRPDGLGDQVAEALIAAAKRGVRVRLLYDSIGSFAF----------------FRSPYPEELR 194 (483)
T ss_pred HHHHHh--hcEEEEEEEEEccCCcHHHHHHHHHHHHHCCCEEEEEEECCCCCCC----------------CcHHHHHHHH
Confidence 444455 88999987445443 36777666 5799999999954322110 1123677788
Q ss_pred cCceEEEEEccC--C--------ceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 265 NLKVAMFEYVRS--G--------WTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 265 ~~~v~i~Ey~r~--g--------wtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.||++..+... + .--|.|.+.|| .....+||-|++
T Consensus 195 ~~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VID------g~ia~~Gg~Ni~ 240 (483)
T PRK01642 195 NAGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVID------GYIAYTGSMNVV 240 (483)
T ss_pred HCCCEEEEecCCCcccccccccccccCceEEEEc------CCEEEeCCcccC
Confidence 899999988422 1 13799999998 368899999986
No 24
>PLN02352 phospholipase D epsilon
Probab=96.78 E-value=0.056 Score=57.38 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=38.0
Q ss_pred ccCcceeEEEEecCc-----------EEeecccCCcCcccc------------------------------------cCc
Q psy702 47 LIGLQHMKFYLIDNC-----------VIITGANLSGDYFTS------------------------------------RQD 79 (308)
Q Consensus 47 ~~Gv~H~K~yvfDd~-----------viiSGANLs~~Yftn------------------------------------RqD 79 (308)
..+.+|=|+.|+|+. -.+.|-.|......+ |.|
T Consensus 296 ~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHD 375 (758)
T PLN02352 296 TLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHD 375 (758)
T ss_pred cccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCCCCcEe
Confidence 556699999999995 345566665433222 345
Q ss_pred ceEEecCcchHHHHHHHHHHHHh
Q psy702 80 RYMIIQDHKPLSDFFDDLSRVLC 102 (308)
Q Consensus 80 RY~~i~~~~~lad~~~~lv~~v~ 102 (308)
=-+.+++ +...|-...|++.|.
T Consensus 376 vh~~V~G-pAA~Dv~~~F~qRW~ 397 (758)
T PLN02352 376 AHACIVG-EAAWDVLTNFEQRWT 397 (758)
T ss_pred EEEEEEC-HHHHHHHHHHHHHHh
Confidence 5567777 778888888888884
No 25
>PRK13912 nuclease NucT; Provisional
Probab=96.69 E-value=0.0089 Score=52.44 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=41.3
Q ss_pred cccCcceeEEEEecCc-EEeecccCCcCcccccCcceEEecCcchHHHHHHHHHHHH
Q psy702 46 ELIGLQHMKFYLIDNC-VIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVL 101 (308)
Q Consensus 46 E~~Gv~H~K~yvfDd~-viiSGANLs~~YftnRqDRY~~i~~~~~lad~~~~lv~~v 101 (308)
+..+..|.|++|+|+. ++++++|++..+|..=.+=-++++| +++++=+.+.-+.+
T Consensus 115 ~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~~N~E~~lii~d-~~~~~~~~~~F~~~ 170 (177)
T PRK13912 115 KYYGIMHQKVAIIDDKIVVLGSANWSKNAFENNYEVLLITDD-TETILKAKEYFQKM 170 (177)
T ss_pred ccccccceeEEEEcCCEEEEeCCCCChhHhccCCceEEEECC-HHHHHHHHHHHHHH
Confidence 3457899999999998 6777899999999865554667778 77766555554443
No 26
>PLN02270 phospholipase D alpha
Probab=96.67 E-value=0.14 Score=54.78 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=40.6
Q ss_pred cccCcceeEEEEecCc-----------E-EeecccCCcCccc-----------------------------------ccC
Q psy702 46 ELIGLQHMKFYLIDNC-----------V-IITGANLSGDYFT-----------------------------------SRQ 78 (308)
Q Consensus 46 E~~Gv~H~K~yvfDd~-----------v-iiSGANLs~~Yft-----------------------------------nRq 78 (308)
...+.+|-|+.|+|+. | .+.|-+|.+.+.. .|.
T Consensus 325 ~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWh 404 (808)
T PLN02270 325 STMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWH 404 (808)
T ss_pred ccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCCCCCeE
Confidence 3589999999999995 3 4447777332222 145
Q ss_pred cceEEecCcchHHHHHHHHHHHHh
Q psy702 79 DRYMIIQDHKPLSDFFDDLSRVLC 102 (308)
Q Consensus 79 DRY~~i~~~~~lad~~~~lv~~v~ 102 (308)
|=-+.|++ +...+.-..|.+.|.
T Consensus 405 Dvh~rVeG-Paa~dL~~~F~~rW~ 427 (808)
T PLN02270 405 DIHSRLEG-PIAWDVLFNFEQRWS 427 (808)
T ss_pred EEEEEEEC-HHHHHHHHHHHHHHH
Confidence 66678888 888888888888884
No 27
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=96.62 E-value=0.001 Score=41.18 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=15.9
Q ss_pred cCcceeEEEEecCc-EEeecccCCcC
Q psy702 48 IGLQHMKFYLIDNC-VIITGANLSGD 72 (308)
Q Consensus 48 ~Gv~H~K~yvfDd~-viiSGANLs~~ 72 (308)
.|.+|.|+.|+||+ ..+.||||.+.
T Consensus 2 ~~~~H~K~~vvD~~~a~vGg~nl~~~ 27 (28)
T PF00614_consen 2 GGSHHQKFVVVDDRVAFVGGANLCDG 27 (28)
T ss_dssp TBEE---EEEETTTEEEEE---SSHH
T ss_pred CcceeeEEEEEcCCEEEECceecCCC
Confidence 57899999999999 77889999764
No 28
>PLN02866 phospholipase D
Probab=96.51 E-value=0.23 Score=54.32 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=42.7
Q ss_pred cCcceeEEEEecCcE-EeecccC---------------------CcCcccc-------------------------cCcc
Q psy702 48 IGLQHMKFYLIDNCV-IITGANL---------------------SGDYFTS-------------------------RQDR 80 (308)
Q Consensus 48 ~Gv~H~K~yvfDd~v-iiSGANL---------------------s~~Yftn-------------------------RqDR 80 (308)
+-.+|.|+.|+|+.| .+.|.|| .+||+.. |.|=
T Consensus 444 n~RhHRKIVVIDg~IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV 523 (1068)
T PLN02866 444 LWSHHEKLVIVDYQICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDV 523 (1068)
T ss_pred cccCCCCeEEECCCEEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccccccccCCCCCceEE
Confidence 348999999999997 5558999 5588843 4555
Q ss_pred eEEecCcchHHHHHHHHHHHHh
Q psy702 81 YMIIQDHKPLSDFFDDLSRVLC 102 (308)
Q Consensus 81 Y~~i~~~~~lad~~~~lv~~v~ 102 (308)
-+.+++ +...|.-..|++.|.
T Consensus 524 ~~~V~G-pAardLa~hFvqRWN 544 (1068)
T PLN02866 524 HCALWG-PPCRDVARHFVQRWN 544 (1068)
T ss_pred EEEEEC-HHHHHHHHHHHHHHH
Confidence 678888 888888888988883
No 29
>PRK12452 cardiolipin synthetase; Reviewed
Probab=96.48 E-value=0.014 Score=59.58 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred HHHHhcCCCCEEEEEecCCCCCH---HHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 190 LILSLARDGSCVSLGTGYFNLTQ---EYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 190 ~ll~~~~~~~~l~i~TpYFn~~~---~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
+.++.| ++.|+|.+=-|..++ .+.++|. +++||+|+||+-+-.+. . ..++|++++.
T Consensus 157 ~~I~~A--k~~I~i~~yi~~~d~~g~~i~~aL~~aa~rGV~VRiL~D~~Gs~------~-----------~~~~~~~~L~ 217 (509)
T PRK12452 157 QAIEQA--KHHIHIQYYIYKSDEIGTKVRDALIKKAKDGVIVRFLYDGLGSN------T-----------LRRRFLQPMK 217 (509)
T ss_pred HHHHHh--CCEEEEEEEEEeCCcHHHHHHHHHHHHHHCCCEEEEEEECCCCC------C-----------CCHHHHHHHH
Confidence 444455 899999962222332 4556555 46899999998644211 1 2356788888
Q ss_pred cCceEEEEEccC---------CceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 265 NLKVAMFEYVRS---------GWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 265 ~~~v~i~Ey~r~---------gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.||++.+|... +.--|-|-+.+| .....+|+.|++
T Consensus 218 ~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VID------g~ia~~GG~Ni~ 262 (509)
T PRK12452 218 EAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVD------GEIGFTGGLNVG 262 (509)
T ss_pred hCCeEEEEecCcccccccccccCCCCCeEEEEc------CCEEEeCCcccc
Confidence 899999988521 223599999998 368899999976
No 30
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=96.37 E-value=0.0038 Score=38.68 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=15.4
Q ss_pred CceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 277 GWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 277 gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+|+.|.|.+++| ..++.|||.|++
T Consensus 2 ~~~~H~K~~vvD------~~~a~vGg~nl~ 25 (28)
T PF00614_consen 2 GGSHHQKFVVVD------DRVAFVGGANLC 25 (28)
T ss_dssp TBEE---EEEET------TTEEEEE---SS
T ss_pred CcceeeEEEEEc------CCEEEECceecC
Confidence 689999999998 258999999986
No 31
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.056 Score=48.18 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCCCH--HHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHH
Q psy702 185 SRVTKLILSLARDGSCVSLGTGYFNLTQ--EYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFL 260 (308)
Q Consensus 185 ~~~~~~ll~~~~~~~~l~i~TpYFn~~~--~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~ 260 (308)
+.++..|.....+...+.|.=.+--+.- -+.+.|+ ..+|++++|+|+.= ++|-.+.. +
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~sG~sll~~~L~d~~~Kgvkgkilts~Y--lnfTdP~a----------------l 99 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITESGLSLLFDLLLDLVNKGVKGKILTSDY--LNFTDPVA----------------L 99 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeCccHHHHHHHHHHHhcCCceEEEecccc--cCccCHHH----------------H
Confidence 5677777776654456655554333221 1222222 36899999999854 55654222 3
Q ss_pred HHh-hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 261 SRV-SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 261 ~~l-~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+++ .-.+|++.-+.-+.-.||.||..+-... ....+|||||+.
T Consensus 100 ~~Ll~~~nve~r~~~~~~~~fH~KgYiFe~~~---~~taiiGSsNlt 143 (198)
T COG3886 100 RKLLMLKNVELRVSTIGSANFHTKGYIFEHNT---GITAIIGSSNLT 143 (198)
T ss_pred HHHHhhhccceEEEecCccccccceeEEEecc---eEEEEEccchhh
Confidence 332 1233555555547789999999976333 356899999985
No 32
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=95.70 E-value=0.1 Score=49.76 Aligned_cols=94 Identities=18% Similarity=0.257 Sum_probs=55.7
Q ss_pred CEEEEEecCCCCCHHHHH--HHHc-CCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhc-CceEEEEEc
Q psy702 199 SCVSLGTGYFNLTQEYVR--AMLD-KPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSN-LKVAMFEYV 274 (308)
Q Consensus 199 ~~l~i~TpYFn~~~~~~~--~L~~-~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~-~~v~i~Ey~ 274 (308)
.++.|+|||.- +..+.. .|.. ....+++++++=-.-+||-. - .|.. ..+.-+.... ....+ |.
T Consensus 9 d~l~IasGYvS-~~~l~~L~~l~e~~~~~~I~LivGM~~~eGis~------~---~~~~-~~~L~~~~~~~~~g~v--Yv 75 (296)
T PF09565_consen 9 DELRIASGYVS-NDALEELKKLVEEYHILKIKLIVGMYYYEGISI------P---QHNA-LCKLNDFLQENGIGEV--YV 75 (296)
T ss_pred CeEEEEEecCC-HHHHHHHHHHHhhCCCcceEEEEeccccCCcCH------H---HHHH-HHHHHHHhhhcCCceE--EE
Confidence 68999999999 544443 1332 24468999998554344322 1 1221 1111111122 22333 33
Q ss_pred cCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 275 RSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 275 r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
.+.--||.|-..+..+ ..|..++|||+||+.
T Consensus 76 ~~~~~~HgKlY~f~k~--g~~~~a~IGSANfS~ 106 (296)
T PF09565_consen 76 VPDPPYHGKLYIFSKN--GKPFRAYIGSANFSQ 106 (296)
T ss_pred eCCCCcccEEEEEecC--CCceEEEEeeccccc
Confidence 4677899999887544 346899999999985
No 33
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=95.51 E-value=0.11 Score=52.34 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=65.6
Q ss_pred HHHHHHHHhc-CCCCEEEEEecCCCCC---HHHHHHHHc----CCCCcEEEEecCcCC-CCCCCCcccccChhHHHHHHH
Q psy702 186 RVTKLILSLA-RDGSCVSLGTGYFNLT---QEYVRAMLD----KPRVNYSVLMAHPTA-NGFLGARGAAGGIPYAYTALA 256 (308)
Q Consensus 186 ~~~~~ll~~~-~~~~~l~i~TpYFn~~---~~~~~~L~~----~~~~~v~Ii~asp~A-NgF~~s~g~sg~IP~~Y~~~~ 256 (308)
+....|++.. .++++|+|+|=||--+ .++.++|.. +.|++|+|++-.-.| -|..|+.+ ....
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~~---------~~~~ 105 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDEAGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAAA---------SNTN 105 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCchHHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccCC---------CCcC
Confidence 4445555443 3489999999999876 577787762 369999999874211 11122211 0122
Q ss_pred HHHHHHhhcC--ceEEEEEccCCce------EEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 257 ARFLSRVSNL--KVAMFEYVRSGWT------YHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 257 ~~f~~~l~~~--~v~i~Ey~r~gwt------fHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.+++++.+. ||++..|..+-+. .|-|++.|| ..+...| .|.+
T Consensus 106 ~~~~~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD------~~v~ysG-aNi~ 156 (451)
T PRK09428 106 ADWYCEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIID------DTVLYSG-ASLN 156 (451)
T ss_pred HHHHHHHHHhCCCceEEEcCCccccchhhhhceeeEEEEC------CCEEEec-cccc
Confidence 4456666443 5888877433332 699999998 2567779 6875
No 34
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=94.07 E-value=0.52 Score=49.82 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=68.0
Q ss_pred HHHHHHHHhcC--CC-CEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHH
Q psy702 186 RVTKLILSLAR--DG-SCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFL 260 (308)
Q Consensus 186 ~~~~~ll~~~~--~~-~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~ 260 (308)
.-+..+++.|. |+ ..|.|+-=-+.-...++++|. +++|++|++++--+.. |= +...-...
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~veLkAr--fd-------------e~~ni~wa 406 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVELKAR--FD-------------EEANIRWA 406 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEehhh--cc-------------chhhHHHH
Confidence 33445666662 22 245554433444688889888 5689999999984421 11 11222334
Q ss_pred HHhhcCceEEEEEccCCceEEeeEEEEecC-CCCCCcEEEEeCCCCCC
Q psy702 261 SRVSNLKVAMFEYVRSGWTYHAKGLWYSES-PGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 261 ~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~-~~~~p~~t~IGSsNf~~ 307 (308)
+++.++|+++. |--+|+--|+|-++|+.. +......+.||+-||+.
T Consensus 407 ~~le~aG~~vi-yg~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 407 RRLEEAGVHVV-YGVVGLKTHAKLALVVRREGGELRRYVHLGTGNYHP 453 (672)
T ss_pred HHHHHcCCEEE-EcCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCCC
Confidence 56678999875 445899999999999853 22223568999999974
No 35
>PLN03008 Phospholipase D delta
Probab=93.27 E-value=13 Score=40.41 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred ccCcceeEEEEecCc--------E-EeecccCCcCcccc--------------------------------cCcceEEec
Q psy702 47 LIGLQHMKFYLIDNC--------V-IITGANLSGDYFTS--------------------------------RQDRYMIIQ 85 (308)
Q Consensus 47 ~~Gv~H~K~yvfDd~--------v-iiSGANLs~~Yftn--------------------------------RqDRY~~i~ 85 (308)
.+..+|=|+.|+|+. | .+.|-+|...+..+ +.|=-+.++
T Consensus 368 ~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVe 447 (868)
T PLN03008 368 TLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRID 447 (868)
T ss_pred ccccccceEEEEccCCCCCccceEEEEcceeccCCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEE
Confidence 679999999999994 3 44466655443222 456667788
Q ss_pred CcchHHHHHHHHHHHHh
Q psy702 86 DHKPLSDFFDDLSRVLC 102 (308)
Q Consensus 86 ~~~~lad~~~~lv~~v~ 102 (308)
+ |.+.|....|.+.|.
T Consensus 448 G-PaV~dL~~~F~qRW~ 463 (868)
T PLN03008 448 G-PAAYDVLINFEQRWR 463 (868)
T ss_pred C-HHHHHHHHHHHHHHH
Confidence 8 888888888888883
No 36
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=90.79 E-value=1.7 Score=42.63 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=62.7
Q ss_pred HHHHhcCCCCEEEEEecCCCCCH---HHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 190 LILSLARDGSCVSLGTGYFNLTQ---EYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 190 ~ll~~~~~~~~l~i~TpYFn~~~---~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
..+..+ +.+|++.+=|+-..+ .+.++|. +++|++|++++.+..+.. + +...+...+.
T Consensus 77 ~~i~~a--~~~I~~~~~i~~~d~~~~~i~~~l~~~a~~gv~vr~l~D~~~~~~-----~-----------~~~~~~~~~~ 138 (438)
T COG1502 77 ELIEAA--KKSIYLQYYIWQDDELGREILDALIEAAKRGVEVRLLLDDIGSTR-----G-----------LLKSLLALLK 138 (438)
T ss_pred HHHHHH--hhEEEEEEEEEeCChhHHHHHHHHHHHHHcCCEEEEEEecCCCcc-----c-----------ccHHHHHHHh
Confidence 444455 789999777777775 5666555 568899999998765421 1 2334455556
Q ss_pred cCce-EEEEEccCCce-----------EEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 265 NLKV-AMFEYVRSGWT-----------YHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 265 ~~~v-~i~Ey~r~gwt-----------fHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.++ .+..+. +.+- .|-|.+.+| ..+.++|+.|++
T Consensus 139 ~~~i~~~~~~~-~~~~~~~~~~~~~~r~H~K~~viD------~~i~~vGg~N~~ 185 (438)
T COG1502 139 RAGIEEVRLFN-PASPRPLRFRRLNRRLHRKIVVID------GKVAFVGGANIG 185 (438)
T ss_pred cCCceEEEecC-CcccccchhhhhhccccceEEEEc------CCEEEecCcccc
Confidence 6677 444442 3333 899999998 368999999987
No 37
>KOG3603|consensus
Probab=86.55 E-value=3.9 Score=40.91 Aligned_cols=97 Identities=21% Similarity=0.197 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCCCCHH--------------HHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChh
Q psy702 186 RVTKLILSLARDGSCVSLGTGYFNLTQE--------------YVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIP 249 (308)
Q Consensus 186 ~~~~~ll~~~~~~~~l~i~TpYFn~~~~--------------~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP 249 (308)
++-..|++++ +..+.|++=|-++.-. ..+.|+ ..+|+.++|....|.++. .....
T Consensus 75 eaW~~Ll~sA--~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~~-~~~d~------ 145 (456)
T KOG3603|consen 75 EAWLELLSTA--QEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGGP-PNADL------ 145 (456)
T ss_pred HHHHHHhhcc--ceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCCC-CcccH------
Confidence 5556788888 8899999988887543 233344 457789999999997664 43222
Q ss_pred HHHHHHHHHHHHHh---hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 250 YAYTALAARFLSRV---SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 250 ~~Y~~~~~~f~~~l---~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
.-+.+. ....+.+.+|.+ +.-+|.|-..+| . ---.+||.||+
T Consensus 146 --------~~Le~~Gaa~vr~id~~~l~g-~GvlHtKf~vvD---~---khfylGSaNfD 190 (456)
T KOG3603|consen 146 --------QVLESLGLAQVRSIDMNRLTG-GGVLHTKFWVVD---I---KHFYLGSANFD 190 (456)
T ss_pred --------HHHHhCCCceEEeeccccccc-CceEEEEEEEEe---c---ceEEEeccccc
Confidence 112221 234577788865 559999999998 2 23568999997
No 38
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=83.10 E-value=3.4 Score=40.30 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCHHHHHHHH--cCCCCcEEEEecCc-----CCCCCCCCcccccChhHHHHHHHHHHHHHhhcCceEEEEEccCCceEEe
Q psy702 210 LTQEYVRAML--DKPRVNYSVLMAHP-----TANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHA 282 (308)
Q Consensus 210 ~~~~~~~~L~--~~~~~~v~Ii~asp-----~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~r~gwtfHa 282 (308)
-...++++|+ ++.|++|++++-=+ ++|=.+ .++|.++|+++. |--+|+=-||
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~Ni~W--------------------a~~Le~aGv~Vi-yG~~glKvHa 106 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLVELKARFDEENNIHW--------------------AKRLEEAGVHVI-YGVPGLKVHA 106 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCCCCC--------------------CHHHHHCT-EEE-E--TT-EE--
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEeccccHHHHhHH--------------------HhhHHhcCeEEE-cCCCChhhee
Confidence 4556666666 45678888888644 334222 455677999986 5569999999
Q ss_pred eEEEEecCCCC-CCcEEEEeCCCCCC
Q psy702 283 KGLWYSESPGS-KPVLTLIGSPNFGI 307 (308)
Q Consensus 283 KGlwi~~~~~~-~p~~t~IGSsNf~~ 307 (308)
|.++|....+. ....+-||+-||+.
T Consensus 107 K~~lI~R~e~~~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 107 KICLIVRREGGGLRRYAHLGTGNYNE 132 (352)
T ss_dssp EEEEEEEEETTEEEEEEEEESS-SST
T ss_pred eEEEEEEEeCCcEEEEEEEcCCCcCc
Confidence 99999754322 24679999999974
No 39
>KOG1329|consensus
Probab=80.25 E-value=1.2 Score=48.08 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred eeEEEEecCc-EEeecccCCcC
Q psy702 52 HMKFYLIDNC-VIITGANLSGD 72 (308)
Q Consensus 52 H~K~yvfDd~-viiSGANLs~~ 72 (308)
|.|+.|+||+ |||.-||||+-
T Consensus 703 HsK~mIvDD~~vIIGSANINqR 724 (887)
T KOG1329|consen 703 HSKLMIVDDEYVIIGSANINQR 724 (887)
T ss_pred eeeeEEecCCEEEEeecccchh
Confidence 9999999998 88888999975
No 40
>PLN02352 phospholipase D epsilon
Probab=78.32 E-value=1.4 Score=47.04 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=18.9
Q ss_pred ceeEEEEecCc-EEeecccCCcCc
Q psy702 51 QHMKFYLIDNC-VIITGANLSGDY 73 (308)
Q Consensus 51 ~H~K~yvfDd~-viiSGANLs~~Y 73 (308)
=|.|+.|+||+ |||.-||||+-=
T Consensus 608 VHSKlMIVDD~~viIGSANIN~RS 631 (758)
T PLN02352 608 VHSKLMIVDDTYILIGSANVNQRS 631 (758)
T ss_pred EeeeEEEEcCcEEEEccccccccc
Confidence 39999999999 666679999643
No 41
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=75.04 E-value=12 Score=39.47 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=54.6
Q ss_pred CHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcCceEEEEEccCCceEEeeEEEEe
Q psy702 211 TQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAKGLWYS 288 (308)
Q Consensus 211 ~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~r~gwtfHaKGlwi~ 288 (308)
+..+++||+ +..|++|+++|-=+. - |= +.+.=...++|.++||++- |--.|+--|||.+.|-
T Consensus 383 dSpIV~ALi~AA~nGKqVtvlVELkA-R-FD-------------EE~NI~WAk~LE~AGvhVv-yG~~glKtHAKm~lVv 446 (696)
T COG0855 383 DSPIVRALIDAAENGKQVTVLVELKA-R-FD-------------EEANIHWAKRLERAGVHVV-YGVVGLKTHAKMLLVV 446 (696)
T ss_pred CCHHHHHHHHHHHcCCeEEEEEEEhh-h-cC-------------hhhhhHHHHHHHhCCcEEE-ecccceeeeeeEEEEE
Confidence 456677676 456788888886442 1 11 1122233566788999885 5558999999999887
Q ss_pred cC-CCCCCcEEEEeCCCCCC
Q psy702 289 ES-PGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 289 ~~-~~~~p~~t~IGSsNf~~ 307 (308)
.. ++.....+-+|+-||+.
T Consensus 447 RrE~~~lrrY~HlGTGNYn~ 466 (696)
T COG0855 447 RREGGKLRRYVHLGTGNYNP 466 (696)
T ss_pred EecCCcEEEEEEecCCCCCc
Confidence 53 33345678999999974
No 42
>KOG1329|consensus
Probab=70.72 E-value=3.3 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.4
Q ss_pred EEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 280 YHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 280 fHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
-|+|+|.+| ....+|||+|.+
T Consensus 702 VHsK~mIvD------D~~vIIGSANIN 722 (887)
T KOG1329|consen 702 VHSKLMIVD------DEYVIIGSANIN 722 (887)
T ss_pred EeeeeEEec------CCEEEEeecccc
Confidence 699999998 267999999986
No 43
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=62.85 E-value=29 Score=33.27 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=36.2
Q ss_pred eeEEEEe-cC----cEEeecccCCc-CcccccCcceEEecCcchHHHHHHHHHHHHhccc
Q psy702 52 HMKFYLI-DN----CVIITGANLSG-DYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKIS 105 (308)
Q Consensus 52 H~K~yvf-Dd----~viiSGANLs~-~YftnRqDRY~~i~~~~~lad~~~~lv~~v~~~S 105 (308)
|-|+|+| .| ..++.-||||. .=|+.||==.++..|-.+..+|+..+-+++..++
T Consensus 82 HgKlY~f~k~g~~~~a~IGSANfS~~~~~~~~~~E~~v~~D~~~a~~~~~~I~~~i~~~~ 141 (296)
T PF09565_consen 82 HGKLYIFSKNGKPFRAYIGSANFSQINGFTRRQYEAMVTCDPNEAEEYYNFIENLIECCC 141 (296)
T ss_pred ccEEEEEecCCCceEEEEeeccccccccccccceeEEEecChHHHHHHHHHHHHHHHhcC
Confidence 6699999 33 37888899999 4444444338888885556666666666554333
No 44
>PLN02866 phospholipase D
Probab=59.48 E-value=8.1 Score=42.81 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=23.2
Q ss_pred ceeEEEEecCc-EEeecccCCcCcccccCcc
Q psy702 51 QHMKFYLIDNC-VIITGANLSGDYFTSRQDR 80 (308)
Q Consensus 51 ~H~K~yvfDd~-viiSGANLs~~YftnRqDR 80 (308)
-|.|+.|+||. +|++-||||+-=+.-+.|.
T Consensus 868 VHsK~~IvDD~~~iiGSaNiN~RS~~G~rDs 898 (1068)
T PLN02866 868 VHSKIMIVDDRAALIGSANINDRSLLGSRDS 898 (1068)
T ss_pred EEeeEEEEcCcEEEEccccccccccccCcCc
Confidence 49999999998 7888899987655433333
No 45
>PLN03008 Phospholipase D delta
Probab=51.21 E-value=11 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.6
Q ss_pred ceeEEEEecCc-EEeecccCCcCccc
Q psy702 51 QHMKFYLIDNC-VIITGANLSGDYFT 75 (308)
Q Consensus 51 ~H~K~yvfDd~-viiSGANLs~~Yft 75 (308)
-|.|+.|+||+ +++.-|||++-=|.
T Consensus 717 vHsK~~ivDd~~~~iGSaN~n~RS~~ 742 (868)
T PLN03008 717 VHAKGMIVDDEYVLMGSANINQRSMA 742 (868)
T ss_pred EeeeEEEECCCEEEEeccccCHhhcc
Confidence 59999999999 55556999876443
No 46
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=44.11 E-value=9.9 Score=38.17 Aligned_cols=83 Identities=18% Similarity=0.138 Sum_probs=42.6
Q ss_pred CCcEEEEecCcC--CCCCCCCcccccChhHHHHHHHHHHHHHhhcCceEEE-----EEccCCceEEeeEEEEec-CCCCC
Q psy702 223 RVNYSVLMAHPT--ANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAMF-----EYVRSGWTYHAKGLWYSE-SPGSK 294 (308)
Q Consensus 223 ~~~v~Ii~asp~--ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~-----Ey~r~gwtfHaKGlwi~~-~~~~~ 294 (308)
...++||-|+.+ .+...|-. -+|.||.-|......|.+..++.-.+-| ...|.+-.-|.|-+.... ...+.
T Consensus 286 ~~~~~IvfPT~e~Vr~S~~G~~-~ggsi~~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~R~~~~pH~K~y~~~~~~~~~~ 364 (443)
T PF06087_consen 286 RPPLKIVFPTVEEVRNSPEGYN-GGGSIPFKYKWWEPNFPQEWLRPYFHKWYASDDPSGRSRAPPHIKTYMRFSKNDFKS 364 (443)
T ss_dssp TEEEEEE--BCHHHCTSTTGGG-GGGGSB--HC--GHHCCHHHHHHCCE-EEEC-TGCTTTTS-B--EEEEEEE-TTTSE
T ss_pred CCCceEECCCHHHHhhCccCCc-CceeEEecchhccccchHHHHHHHHhhhccccccCCCCCcCcceEEEEEecCCCCCc
Confidence 467899988764 12222211 3567888887444444444333223333 335789999999999986 22333
Q ss_pred CcEEEEeCCCCC
Q psy702 295 PVLTLIGSPNFG 306 (308)
Q Consensus 295 p~~t~IGSsNf~ 306 (308)
..+.++||.|+.
T Consensus 365 ~~W~~lgShNLS 376 (443)
T PF06087_consen 365 LGWFYLGSHNLS 376 (443)
T ss_dssp ECEEEEES--BS
T ss_pred cceEEeCcccCC
Confidence 569999999985
No 47
>PLN02270 phospholipase D alpha
Probab=42.01 E-value=19 Score=39.00 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=20.6
Q ss_pred ceeEEEEecCc-EEeecccCCcCccc
Q psy702 51 QHMKFYLIDNC-VIITGANLSGDYFT 75 (308)
Q Consensus 51 ~H~K~yvfDd~-viiSGANLs~~Yft 75 (308)
-|.|+.|+||. +++.-|||++-=|.
T Consensus 658 vH~K~~ivDd~~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 658 VHTKMMIVDDEYIIIGSANINQRSMD 683 (808)
T ss_pred EeeeEEEEcCCEEEEecccccccccc
Confidence 59999999998 77777999875443
No 48
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=41.11 E-value=18 Score=24.01 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=12.5
Q ss_pred eEEEEecCcEEeec
Q psy702 53 MKFYLIDNCVIITG 66 (308)
Q Consensus 53 ~K~yvfDd~viiSG 66 (308)
||+|+-++.+++.|
T Consensus 1 MK~y~~~~~i~lvG 14 (38)
T PF13072_consen 1 MKVYRHENGIILVG 14 (38)
T ss_pred CceEecCCeEEEEe
Confidence 78999999998888
No 49
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=39.42 E-value=73 Score=29.98 Aligned_cols=59 Identities=10% Similarity=0.230 Sum_probs=41.0
Q ss_pred CCEEEEEecCCCCCHHHHHHHHcCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHh----hcCceEEEEE
Q psy702 198 GSCVSLGTGYFNLTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRV----SNLKVAMFEY 273 (308)
Q Consensus 198 ~~~l~i~TpYFn~~~~~~~~L~~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l----~~~~v~i~Ey 273 (308)
.++|+..++||.|.-...-.=++++|++|++|+..+ +|......|-+++ ...+.+++-|
T Consensus 139 S~~i~~~sS~fhP~~p~l~~el~~kg~~vslIlT~~-----------------V~er~~~~~~~el~~~l~~~n~~~~v~ 201 (260)
T COG4742 139 SKRIMGFSSYFHPSYPSLYLELAEKGIDVSLILTEP-----------------VFERLKSDYKEELKEFLKLENTKLYVC 201 (260)
T ss_pred chhhhhhhhhhCCCcHHHHHHHHHcCCCEEEEecHH-----------------HHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 358999999999954333312467899999999866 3555666666555 3455888888
No 50
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=33.90 E-value=78 Score=25.76 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCCcccccChhHHHHHHHHHHHHHhhcCceEEEEEccCCceEEee
Q psy702 238 FLGARGAAGGIPYAYTALAARFLSRVSNLKVAMFEYVRSGWTYHAK 283 (308)
Q Consensus 238 F~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~r~gwtfHaK 283 (308)
+++..+-.+-++.+|. ..+.+.+++++.||.=.-|.|+||.||.|
T Consensus 50 ~~~~~~~~~n~~aA~~-vG~lla~ra~~~gi~~vvfDrgg~~yhGr 94 (109)
T CHL00139 50 VKSSLSSTSTCDASKL-VGQKLAKKSLKKGITKVVFDRGGKLYHGR 94 (109)
T ss_pred hhccccCCCCHHHHHH-HHHHHHHHHHHCCCCEEEEcCCCCccchH
Confidence 3343333455777766 67777888888898888888999999975
No 51
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=33.06 E-value=27 Score=35.12 Aligned_cols=43 Identities=30% Similarity=0.295 Sum_probs=22.2
Q ss_pred cCCCccccccCcceeEEEEe--cCc---EEeecccCCcC---cccc---cCcce
Q psy702 39 LLPHRYNELIGLQHMKFYLI--DNC---VIITGANLSGD---YFTS---RQDRY 81 (308)
Q Consensus 39 ~~P~r~nE~~Gv~H~K~yvf--Dd~---viiSGANLs~~---Yftn---RqDRY 81 (308)
++..+..+-+|.+|.|+.|. +|. |+|+-|||-.. ..+| +||..
T Consensus 90 ~~~~~mp~~~g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~~~~q~vw~~d~l 143 (443)
T PF06087_consen 90 LIFPPMPIPFGTHHSKMMLLFYEDGSLRVVIPTANLTPYDWNNKTQGVWIQDFL 143 (443)
T ss_dssp EEEE---STT--B--EEEEEEETTCEEEEEEESS-BSHHHHCSSB-EEEE---E
T ss_pred EEccCCCcccccccceeEEEEeCCccEEEEEECCCCCHHHHCCcceeEEEeccc
Confidence 34456667889999999885 443 99999999765 4566 78883
No 52
>KOG3964|consensus
Probab=30.35 E-value=14 Score=36.90 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=37.8
Q ss_pred cccCCCccccccCcceeEEEEecCcEEeecccCCcCcccccCc
Q psy702 37 NRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQD 79 (308)
Q Consensus 37 ~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~YftnRqD 79 (308)
...+|.+-+|..|+.|.|--.||+.++.+|||....|+-.+.|
T Consensus 198 s~sl~~~~~~~~~~i~~~n~~v~p~~~~~~a~~q~sqll~~~~ 240 (469)
T KOG3964|consen 198 SFSLQKIPDESDGSIHTKNPRVDPIENLSGANMQMSQLLTGHS 240 (469)
T ss_pred hhhhhhCcchhhcccccCCccccchhhHHHhHHHHHHHHHhhh
Confidence 3468899999999999999999999999999988888776654
No 53
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=29.38 E-value=98 Score=29.92 Aligned_cols=68 Identities=21% Similarity=0.426 Sum_probs=40.4
Q ss_pred EEEEecCcCC-CCCCCC--cccccChhHHHHHHHHHHHHHh-hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEe
Q psy702 226 YSVLMAHPTA-NGFLGA--RGAAGGIPYAYTALAARFLSRV-SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIG 301 (308)
Q Consensus 226 v~Ii~asp~A-NgF~~s--~g~sg~IP~~Y~~~~~~f~~~l-~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IG 301 (308)
.+|+=++|.. ++++.. +|. |+ -.. .-+..+|+++. .+.=||=+|...+|+.++..| .++|+..
T Consensus 226 ~dlLWSDP~~~~~~~~~~~RG~-g~-~FG-~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~----------~~iTvFS 292 (321)
T cd07420 226 LDILWSDPKAQKGCKPNTFRGG-GC-YFG-PDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNN----------KVITIFS 292 (321)
T ss_pred heeeecCCccCCCCCccCCCCC-cc-ccC-HHHHHHHHHHCCCcEEEEcChhhhcceEEecCC----------eEEEEec
Confidence 3788888863 455543 342 22 222 23667888775 334466677766666554322 3778999
Q ss_pred CCCCC
Q psy702 302 SPNFG 306 (308)
Q Consensus 302 SsNf~ 306 (308)
+|||.
T Consensus 293 a~nY~ 297 (321)
T cd07420 293 ASNYY 297 (321)
T ss_pred CCccC
Confidence 99983
No 54
>PF00541 Adeno_knob: Adenoviral fibre protein (knob domain); InterPro: IPR000978 Adenoviruses are responsible for diseases such as pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. Viral infection commences with recognition of host cell receptors by means of specialised proteins on viral surfaces. Specific attachment of adenovirus is achieved through interactions between host-cell receptors and the adenovirus fibre protein and is mediated by the globular carboxy-terminal domain of the adenovirus fibre protein, termed the carboxy-terminal knob domain.; GO: 0007155 cell adhesion, 0019058 viral infectious cycle, 0019062 virion attachment to host cell surface receptor; PDB: 3EXW_A 3F0Y_I 2W9L_S 2J1K_I 2J2J_F 2WBV_E 2WGU_C 1UXE_B 2WGT_B 3QND_E ....
Probab=29.16 E-value=29 Score=30.59 Aligned_cols=28 Identities=25% Similarity=0.532 Sum_probs=24.4
Q ss_pred EEecCc-EEeecccCCcCcccccCcceEE
Q psy702 56 YLIDNC-VIITGANLSGDYFTSRQDRYMI 83 (308)
Q Consensus 56 yvfDd~-viiSGANLs~~YftnRqDRY~~ 83 (308)
+.||++ ++++|.++...|+.-|++--+.
T Consensus 59 L~FD~~G~Ll~~~~~~~~~Wg~R~~~s~~ 87 (171)
T PF00541_consen 59 LLFDSNGVLLSGSSLLKTYWGYRSGDSVV 87 (171)
T ss_dssp EEEETTSEBETTTSSBGSGEEEEETTEEE
T ss_pred EEECCCCCEeeCCcCccccceeccCCccC
Confidence 568998 9999999999999999986554
No 55
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=28.49 E-value=35 Score=33.72 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCCCCChhhhhHHHHHhcCCceEEEEeeCCCCcccc
Q psy702 1 TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWPL 36 (308)
Q Consensus 1 ~rg~~~s~~~l~~l~~~~~~~v~i~LyhtP~l~g~~ 36 (308)
|.||.+.+.||..+++. .+.++.+|-||.|..+.
T Consensus 57 TNGKgSt~~~l~~iL~~--~G~~vG~~tSphl~~~~ 90 (416)
T PRK10846 57 TNGKGTTCRTLESILMA--AGYRVGVYSSPHLVRYT 90 (416)
T ss_pred CCChHHHHHHHHHHHHH--cCCCceEECCCCCCCcc
Confidence 67999999999999987 55788999999886544
No 56
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=26.98 E-value=86 Score=28.38 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecC
Q psy702 188 TKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAH 232 (308)
Q Consensus 188 ~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~as 232 (308)
+..+++.| +.+|.|+.+. ..-+.+.++|. .++|+.|.+++.+
T Consensus 15 i~elI~~A--e~eI~is~~~-~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 15 IRELIENA--ESEIYISIPP-EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHC---SSEEEEEE-G-GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHh--heEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 34577777 8999999885 44456777665 4689999999987
No 57
>PF11520 Cren7: Chromatin protein Cren7; InterPro: IPR020906 Cren7 is a chromatin protein found in Crenarchaeota and has a higher affinity for double-stranded DNA than for single-stranded DNA. The protein contains negative DNA supercoils and is associated with genomic DNA in vivo. Cren7 interacts with duplex DNA through a beta-sheet and a long flexible loop. Its binding to double-stranded DNA is without sequence specificity. There is approximately 1 Cren7 molecule for 12 bp of DNA. The function of Cren7 has not been completely determined but it is thought that the protein may have a role similar to that of archaeal proteins in Euryarchaea [].; GO: 0003690 double-stranded DNA binding, 0005737 cytoplasm; PDB: 3KXT_A 3LWH_A 3LWI_A 2JTM_A.
Probab=26.56 E-value=46 Score=24.19 Aligned_cols=22 Identities=9% Similarity=0.403 Sum_probs=12.8
Q ss_pred CceEEEEeeCCCCcccccccCC
Q psy702 20 HNCHVSFYHTPDLRWPLNRLLP 41 (308)
Q Consensus 20 ~~v~i~LyhtP~l~g~~~~~~P 41 (308)
-+|.|+||++|+.....+..+|
T Consensus 35 kGV~igLFk~P~tGk~fR~~v~ 56 (60)
T PF11520_consen 35 KGVKIGLFKDPETGKYFRKKVP 56 (60)
T ss_dssp --EEEEEEE-TTT--EEEEEE-
T ss_pred CceEEEEEeCCCCCcchhhhcc
Confidence 4599999999997665555554
No 58
>PF12111 PNPase_C: Polyribonucleotide phosphorylase C terminal; InterPro: IPR021968 PNPase regulates the expression of small non-coding RNAs that control expression of outer-membrane proteins. The enzyme also affects complex processes, such as the tissue-invasive virulence of Salmonella enterica and the regulation of a virulence-factor secretion system in Yersinia. In Escherichia coli, PNPase is involved in the quality control of ribosomal RNA precursors and is required for growth following cold shock. This family contains the C-terminal protomer domain of the PNPase core. The function of the C-terminal protomer is to catalyse phosphorolysis through its two active sites [].; PDB: 3H1C_S 3GCM_F 3GME_D.
Probab=22.43 E-value=29 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=0.0
Q ss_pred eEEEEEccCCceEEeeEE
Q psy702 268 VAMFEYVRSGWTYHAKGL 285 (308)
Q Consensus 268 v~i~Ey~r~gwtfHaKGl 285 (308)
+++-||+|+-..|+.||-
T Consensus 3 ~~~s~W~rp~y~F~GKG~ 20 (39)
T PF12111_consen 3 PRISEWQRPAYYFYGKGS 20 (39)
T ss_dssp ------------------
T ss_pred ccccccccccccccccCc
Confidence 467799999999999983
No 59
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=21.83 E-value=3.5e+02 Score=25.72 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=51.6
Q ss_pred CEEEEEecCCCCCHHHHHHHH-cC-------CCCcEEEEecCcC--CCCCCCCcccccChhHHH-HHHHHHHHHHh-hcC
Q psy702 199 SCVSLGTGYFNLTQEYVRAML-DK-------PRVNYSVLMAHPT--ANGFLGARGAAGGIPYAY-TALAARFLSRV-SNL 266 (308)
Q Consensus 199 ~~l~i~TpYFn~~~~~~~~L~-~~-------~~~~v~Ii~asp~--ANgF~~s~g~sg~IP~~Y-~~~~~~f~~~l-~~~ 266 (308)
.++..+-|-+.|.-...+.+. .. .+.-.+++-++|. .++|-.++.=.|+ .| ..+.++|+++. .+.
T Consensus 162 ~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~---~fg~~~~~~Fl~~n~l~~ 238 (294)
T PTZ00244 162 EKIICMHGGLSPDLTSLASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSY---LFGEDIVNDFLDMVDMDL 238 (294)
T ss_pred CeeEEEcCCCCchhhHHHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCcc---ccCHHHHHHHHHHcCCcE
Confidence 345555566655443333222 11 1233589999986 3466554321221 12 23677888775 333
Q ss_pred ceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 267 KVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 267 ~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
=||=+|+...|..++.. ..++|+..||||.
T Consensus 239 iiR~Hq~~~~G~~~~~~----------~~~iTvfSa~~Y~ 268 (294)
T PTZ00244 239 IVRAHQVMERGYGFFAS----------RQLVTVFSAPNYC 268 (294)
T ss_pred EEEcCccccCceEEcCC----------CeEEEEeCCcccc
Confidence 36667766566544321 2378999999984
No 60
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=21.49 E-value=65 Score=31.39 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=28.0
Q ss_pred CCCCCChhhhhHHHHHhcCCceEEEEeeCCCCccc
Q psy702 1 TRGDVNSKTLLSPIVKQFSHNCHVSFYHTPDLRWP 35 (308)
Q Consensus 1 ~rg~~~s~~~l~~l~~~~~~~v~i~LyhtP~l~g~ 35 (308)
|-||.+.+.||..+++. .+.++.+|-||.+..+
T Consensus 26 TNGKgSt~~~l~~iL~~--~g~~vg~~tSphl~~~ 58 (397)
T TIGR01499 26 TNGKGSTCAFLESILRA--AGYKVGLFTSPHLVSF 58 (397)
T ss_pred CCChHHHHHHHHHHHHH--cCCCeeEEeCCCcCcc
Confidence 66899999999999987 5678899999988543
No 61
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=20.95 E-value=1.8e+02 Score=28.88 Aligned_cols=78 Identities=24% Similarity=0.377 Sum_probs=44.5
Q ss_pred EEEEecCcC-CCCCCCC--cccccChhHHHHHHHHHHHHHh-hcCceEEEEE-----ccCCceEEeeEEEEecCCCCCCc
Q psy702 226 YSVLMAHPT-ANGFLGA--RGAAGGIPYAYTALAARFLSRV-SNLKVAMFEY-----VRSGWTYHAKGLWYSESPGSKPV 296 (308)
Q Consensus 226 v~Ii~asp~-ANgF~~s--~g~sg~IP~~Y~~~~~~f~~~l-~~~~v~i~Ey-----~r~gwtfHaKGlwi~~~~~~~p~ 296 (308)
.+|+=++|. .+||+.+ +|. | +... .-+.++|+++. .+.=|+=+|. +|+|--...+|..++...+...+
T Consensus 246 ~dlLWSDP~~~~g~~~~~~RG~-g-~~FG-~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~l 322 (377)
T cd07418 246 GDVLWSDPSLTPGLSPNKQRGI-G-LLWG-PDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKL 322 (377)
T ss_pred eeeEeeCCccCCCCCccCCCCC-c-cccC-HHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcE
Confidence 388889987 4567664 343 2 2222 34778888875 3333555663 33343344456555422112347
Q ss_pred EEEEeCCCCC
Q psy702 297 LTLIGSPNFG 306 (308)
Q Consensus 297 ~t~IGSsNf~ 306 (308)
+|+..+|||.
T Consensus 323 iTvFSa~nY~ 332 (377)
T cd07418 323 ITLFSAPDYP 332 (377)
T ss_pred EEEecCCccc
Confidence 8999999985
Done!