Query psy702
Match_columns 308
No_of_seqs 148 out of 481
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:44:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsi_A Phosphatidylserine synt 100.0 2.1E-40 7E-45 328.2 24.0 259 7-307 107-384 (458)
2 1v0w_A Phospholipase D; hydrol 99.5 9.4E-14 3.2E-18 138.3 13.1 114 185-307 316-460 (506)
3 1byr_A Protein (endonuclease); 99.1 7.5E-10 2.6E-14 92.2 10.7 95 186-306 17-113 (155)
4 4ggj_A Mitochondrial cardiolip 98.8 1.8E-08 6E-13 88.5 9.2 90 189-306 52-143 (196)
5 1xdp_A Polyphosphate kinase; P 98.5 2.9E-06 9.9E-11 87.5 16.5 120 49-233 430-565 (687)
6 1xdp_A Polyphosphate kinase; P 98.3 1.1E-06 3.7E-11 90.7 8.7 102 187-307 351-461 (687)
7 4gel_A Mitochondrial cardiolip 98.1 3.3E-06 1.1E-10 74.3 7.0 96 189-306 64-175 (220)
8 2o8r_A Polyphosphate kinase; s 98.0 1.5E-05 5.1E-10 82.3 8.4 82 190-306 526-619 (705)
9 1byr_A Protein (endonuclease); 97.4 0.00031 1.1E-08 57.7 6.9 54 48-101 90-144 (155)
10 3hsi_A Phosphatidylserine synt 97.3 0.00029 1E-08 69.3 6.2 101 188-306 42-160 (458)
11 4ggj_A Mitochondrial cardiolip 97.1 0.00072 2.5E-08 58.9 6.4 94 8-102 72-175 (196)
12 1v0w_A Phospholipase D; hydrol 96.2 0.019 6.4E-07 56.7 10.2 100 186-305 66-185 (506)
13 2o8r_A Polyphosphate kinase; s 94.3 0.14 4.7E-06 52.9 9.3 103 188-307 357-468 (705)
14 4gel_A Mitochondrial cardiolip 93.2 0.08 2.7E-06 45.9 4.6 96 7-104 83-209 (220)
15 2c1l_A Restriction endonucleas 87.2 1.3 4.5E-05 40.3 6.9 89 197-307 34-128 (358)
16 3qph_A TRMB, A global transcri 75.0 7.9 0.00027 36.1 7.8 83 187-305 123-207 (342)
17 1jy1_A TDP1, tyrosyl-DNA phosp 35.1 18 0.00061 35.3 2.5 75 223-306 290-374 (464)
18 1q32_A TDP1P;, tyrosyl-DNA pho 31.5 19 0.00065 35.9 2.0 79 223-306 367-467 (544)
19 3kxt_A Chromatin protein CREN7 31.0 34 0.0012 23.5 2.6 25 20-44 30-54 (56)
20 1h7z_A Adenovirus fibre protei 29.7 19 0.00065 31.2 1.4 25 55-79 69-94 (194)
21 4a5z_A MITD1, MIT domain-conta 29.3 2.5E+02 0.0085 23.4 9.3 93 175-288 15-120 (163)
22 2qlk_A Fiber, PIV; fibre, CD46 24.8 26 0.00088 30.7 1.4 24 56-79 86-110 (213)
23 1knb_A Adenovirus type 5 fiber 23.6 23 0.00078 30.7 0.8 27 56-82 74-101 (196)
24 3cnc_A Fiber protein; adenovir 22.6 25 0.00086 31.0 0.9 26 55-80 91-117 (220)
25 3sq7_A Tyrosyl-DNA phosphodies 22.6 40 0.0014 33.0 2.4 90 213-306 281-390 (470)
26 1kac_A Protein (fiber KNOB pro 21.8 30 0.001 29.7 1.2 25 56-80 66-94 (185)
No 1
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-40 Score=328.16 Aligned_cols=259 Identities=20% Similarity=0.280 Sum_probs=193.4
Q ss_pred hhhhhHHHHHhcCCceEEE--EeeCCCCcccccccCCCccccccCcceeEEEEecCcEEeecccCCcCcccc----cCcc
Q psy702 7 SKTLLSPIVKQFSHNCHVS--FYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTS----RQDR 80 (308)
Q Consensus 7 s~~~l~~l~~~~~~~v~i~--LyhtP~l~g~~~~~~P~r~nE~~Gv~H~K~yvfDd~viiSGANLs~~Yftn----RqDR 80 (308)
+.+++.+|++..|+ |+|+ +|+ +|.+++|.+|++|+|++|+||+++++||||+++||++ |+||
T Consensus 107 ~~~~~~~L~~~g~n-v~v~~~~f~-----------~p~~~~~~~~r~H~Ki~viD~~v~~~G~Ni~d~y~~~~~~~~~dr 174 (458)
T 3hsi_A 107 NADWYCEQRQTYQL-PDDPNMFFG-----------VPINTREVFGVLHVKGFVFDDTVLYSGASINNVYLHQFEKYRYDR 174 (458)
T ss_dssp HHHHHHHHHHHHTC-TTCCCCEEE-----------ECSSSSGGGCCEECCEEEETTEEEEESCCBSTTTTTCSSCCEECC
T ss_pred cHHHHHHHHhhCCC-ceEeeeecC-----------CccccccccCcceeeEEEECCCEEEEeeecCHHHhcCCcccCcch
Confidence 46788899888665 8888 885 3667889999999999999999999999999999997 9999
Q ss_pred eEEecCcchHHHHHHHHHHHHhccceeecCCCccc-cCCCCCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCC
Q psy702 81 YMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFI-LDKEFPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPA 159 (308)
Q Consensus 81 Y~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~-~~~~~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (308)
|++|++ +.++|++..+++.. +..+..+. +...| .+..+.. ....+..+..+.... .+ .... .
T Consensus 175 d~~i~g-~~~~D~~~~~~~~~------~~~g~~v~~l~~~~--~~~~~~~-~~~~~~~~~~l~~~~--~~--~~~~--~- 237 (458)
T 3hsi_A 175 YQKITH-AELADSMVNFINDY------LLDFSAVYPLDVTN--RPRTKEI-RGNIRAYRKDLAQNG--EY--SLKS--A- 237 (458)
T ss_dssp EEEEEC-HHHHHHHHHHHHHT------TCCTTTCEESSSSC--CCCGGGT-HHHHHHHHHHHHHHC--CC--CCSS--C-
T ss_pred hhhhcC-chHHHHHHHHHHhh------hhcCccchhhHHHh--cccchhh-HHHHHHHHHhhhhcc--cc--cccc--c-
Confidence 999999 99999999998764 23333332 22112 2221111 111111222222110 11 0000 0
Q ss_pred CCCCCCCCeEEEEeecCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCC
Q psy702 160 LSSTQPPDTWLAPLIELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANG 237 (308)
Q Consensus 160 ~~~~~~~dt~v~P~~q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANg 237 (308)
..+..+++++|+.+.|+. ...-.+.+..+|..| +++|+|+||||+|++.+.++|. +.+|++|+|||+++.||+
T Consensus 238 --~~~~~~~~v~p~~~~~~~-~~~i~~~~~~lI~~A--~~~I~I~tpYf~p~~~~~~aL~~Aa~rGV~VrIi~~~~~and 312 (458)
T 3hsi_A 238 --VKLPNVLSVSPLFGLGAS-GNELNQVIEDLFLQV--QKKLVICTPYFNFPRTLQHKIATLLENGKRVEIIVGDKVAND 312 (458)
T ss_dssp --BSSCSSCEEEEEEEESSS-SCHHHHHHHHHHHTC--SSEEEEECSSSCCCHHHHHHHHHHHTTTCEEEEEEECGGGST
T ss_pred --CCCCceEEEecCCCCCCc-hhHHHHHHHHHHHhc--ccEEEEEEeccCCCHHHHHHHHHHHHCCCeEEEEECCccccC
Confidence 123457899999998863 222335667778877 8999999999999999999887 579999999999999999
Q ss_pred CCCCcc----cccChhHHHHHHHHHHHHH---hhcCc---eEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 238 FLGARG----AAGGIPYAYTALAARFLSR---VSNLK---VAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 238 F~~s~g----~sg~IP~~Y~~~~~~f~~~---l~~~~---v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
||.+++ ..+.+|++|+..+++|+++ +.+.| |++||| ++|++|||++|+| ..+++|||+||+.
T Consensus 313 ~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~--~~~~lHaK~~vvD------~~~~~vGS~N~d~ 384 (458)
T 3hsi_A 313 FYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRD--GDNTYHLKGVWVD------DRYILLTGNNLNP 384 (458)
T ss_dssp TCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECB--TTBEECCCEEEET------TTEEEEECCCCSH
T ss_pred CccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEec--CCCceeEEEEEEC------CeEEEecCCCCCc
Confidence 998776 6789999999999999764 45677 777776 7999999999998 3689999999984
No 2
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.50 E-value=9.4e-14 Score=138.31 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCCEEEEEe----cCCCC----CHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHH
Q psy702 185 SRVTKLILSLARDGSCVSLGT----GYFNL----TQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTA 254 (308)
Q Consensus 185 ~~~~~~ll~~~~~~~~l~i~T----pYFn~----~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~ 254 (308)
++.+..+|..| +++|+|+| |||+| ++.+.++|. +.+|++|+||+++.. |++....+....+..++..
T Consensus 316 ~~~~~~~I~~A--~~~I~I~tq~~~pyf~p~~~~~~~i~~aL~~Aa~rGV~VrIl~~~~~-~~~~~~~a~~~~~~~L~~~ 392 (506)
T 1v0w_A 316 ESALRALVASA--KGHIEISQQDLNATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPA-NRGAVGSGGYSQIKSLSEI 392 (506)
T ss_dssp HHHHHHHHHTC--SSEEEEEESCSSCCTTTSCSCCHHHHHHHHHHHHTTCEEEEEECCGG-GCC------CCCCSCTHHH
T ss_pred HHHHHHHHhCc--CcEEEEEeccccccccCcccchHHHHHHHHHHHhCCCcEEEEeCCCC-chHHHHHhHHHHHHHHHHh
Confidence 45566777777 89999998 77777 679999887 469999999999874 6654322222222222221
Q ss_pred ---HHHH--H-------HHHhhcCceEEE--------EEcc-CCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 255 ---LAAR--F-------LSRVSNLKVAMF--------EYVR-SGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 255 ---~~~~--f-------~~~l~~~~v~i~--------Ey~r-~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+... + ++.....++++. +|.. .+..+|+|.+++| ..+++|||+||+.
T Consensus 393 ~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~~~~~~~lHaK~~vvD------~~~~~vGS~N~d~ 460 (506)
T 1v0w_A 393 SDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVD------SSTFYIGSKNLYP 460 (506)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTTSCCCCBCCEEEEET------TTEEEEESCCSSC
T ss_pred hhhhcccchhcccccchhccccccceeeeeccccCccccccCccccceEEEEEEC------CcEEEEeCCCCCC
Confidence 0000 0 001111246774 4421 1458999999997 2589999999974
No 3
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.07 E-value=7.5e-10 Score=92.18 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=75.0
Q ss_pred HHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHh
Q psy702 186 RVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRV 263 (308)
Q Consensus 186 ~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l 263 (308)
+.+..++..| +++|+|+++|| .++.+.++|. +++|++|+||+.+.... + ...+.+++.+
T Consensus 17 ~~~~~~i~~A--~~~I~i~~~~~-~~~~i~~aL~~a~~rGV~Vril~~~~~~~------~----------~~~~~~~~~L 77 (155)
T 1byr_A 17 VLVLSAIDSA--KTSIRMMAYSF-TAPDIMKALVAAKKRGVDVKIVIDERGNT------G----------RASIAAMNYI 77 (155)
T ss_dssp HHHHHHHHHC--SSEEEEEESSB-CCHHHHHHHHHHHHTTCEEEEEEESTTCC------S----------HHHHHHHHHH
T ss_pred HHHHHHHHHH--hhEEEEEEEEe-CCHHHHHHHHHHHHCCCEEEEEEeCcccc------c----------cccHHHHHHH
Confidence 5567788888 78999999999 5788888777 46999999999976421 0 1345567777
Q ss_pred hcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 264 SNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 264 ~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
.+.|++++.+. +...+|+|.+.+| ....+|||+||+
T Consensus 78 ~~~gv~v~~~~-~~~~~H~K~~iiD------~~~~~iGS~N~~ 113 (155)
T 1byr_A 78 ANSGIPLRTDS-NFPIQHDKVIIVD------NVTVETGSFNFT 113 (155)
T ss_dssp HHTTCCEEEEC-SSSCCCCCEEEET------TTEEEEESCCBS
T ss_pred HHCCCeEEEcC-CcccccceEEEEC------CCEEEEECCCCC
Confidence 78899999985 3458999999997 258999999997
No 4
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=98.78 E-value=1.8e-08 Score=88.50 Aligned_cols=90 Identities=14% Similarity=0.015 Sum_probs=66.3
Q ss_pred HHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcC
Q psy702 189 KLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNL 266 (308)
Q Consensus 189 ~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~ 266 (308)
..+|..| +++|+|++ |+-..+++.++|. +++||+|+||+-+..... ....+..+.+.
T Consensus 52 l~~I~~A--~~sI~i~~-y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~------------------~~~~~~~l~~~ 110 (196)
T 4ggj_A 52 LRALLAA--RSSLELCL-FAFSSPQLGRAVQLLHQRGVRVRVITDCDYMAL------------------NGSQIGLLRKA 110 (196)
T ss_dssp HHHHHTC--SSEEEEEE-SCBCCHHHHHHHHHHHHTTCEEEEEESSCCC---------------------CCHHHHHHHT
T ss_pred HHHHHHh--heEEEEEE-EEeCCHHHHHHHHHHHHcCCcEEEEEecccccc------------------cHHHHHHHHhc
Confidence 3445556 89999998 7777899999888 569999999995322110 11124456678
Q ss_pred ceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 267 KVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 267 ~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
||.++.+. +...+|+|.+.+| ..+.++||.||+
T Consensus 111 gi~v~~~~-~~~~~H~K~~viD------~~~~~~GS~N~t 143 (196)
T 4ggj_A 111 GIQVRHDQ-DLGYMHHKFAIVD------KKVLITGSLNWT 143 (196)
T ss_dssp TCEEEECC-SSSCCCCEEEEET------TTEEEEESCCBC
T ss_pred CCCccccc-ccccccCcEEEEc------ceEEEecCccCC
Confidence 99999885 4457899999997 368999999996
No 5
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=98.47 E-value=2.9e-06 Score=87.53 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=77.3
Q ss_pred Cc-ceeEEEEecC----c----EEeecccCCcCcccccCcceEEecCcchHHHHHHHHHHHHhccceeecCCCccccCCC
Q psy702 49 GL-QHMKFYLIDN----C----VIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVLCKISFQLTPDGKFILDKE 119 (308)
Q Consensus 49 Gv-~H~K~yvfDd----~----viiSGANLs~~YftnRqDRY~~i~~~~~lad~~~~lv~~v~~~S~~l~~~~~~~~~~~ 119 (308)
|. .|.|+.|+|+ . +.++|+|++...+....|=-+.+.| ++++.-+..+.......|
T Consensus 430 ~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~n~D~~l~i~~-~~i~~~l~~~F~~~~~~s-------------- 494 (687)
T 1xdp_A 430 GLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLTAD-ARITNEVRRVFNFIENPY-------------- 494 (687)
T ss_dssp TCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTEEEEEEEECC-HHHHHHHHHHHHHHHCTT--------------
T ss_pred CccccceEEEEEeccCCeEEEEEEEeCCcCCcchhhhcceEEEEEeC-HHHHHHHHHHHHHHHhhc--------------
Confidence 45 9999999994 4 5888999999999888888888888 777666655544431111
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCCeEEEEeecCCCCCCCCcHH---HHHHHHHhcC
Q psy702 120 FPLSPVSVTQRGEYLKRSRSLVLDMYDGYRTRNTTAVSPALSSTQPPDTWLAPLIELPPLHIQLDSR---VTKLILSLAR 196 (308)
Q Consensus 120 ~~~~p~~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~v~P~~q~G~~~i~~d~~---~~~~ll~~~~ 196 (308)
.|.. .....+ +|... ... .+...++.|.
T Consensus 495 ---~~~~--------------------------------------~~~l~~------sP~~~--~~~l~~~I~~ei~~A~ 525 (687)
T 1xdp_A 495 ---RPVT--------------------------------------FDYLMV------SPQNS--RRLLYEMVDREIANAQ 525 (687)
T ss_dssp ---SCCC--------------------------------------CSSCEE------ETTSH--HHHHHHHHHHHHHHHH
T ss_pred ---cccc--------------------------------------hhheee------CCchh--hHHHHHHHHHHHHHHH
Confidence 0000 001111 12211 112 2223333442
Q ss_pred --CCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCc
Q psy702 197 --DGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHP 233 (308)
Q Consensus 197 --~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp 233 (308)
...+|+|.++| .+++.++++|. +.+||+|+||+.+.
T Consensus 526 ~g~~~~I~i~~~~-lpD~~ii~AL~~Aa~rGV~VrLivrg~ 565 (687)
T 1xdp_A 526 QGLPSGITLKLNN-LVDKGLVDRLYAASSSGVPVNLLVRGM 565 (687)
T ss_dssp TTCCCCEEEEESC-BCCHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCCCEEEEEeCC-CCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 23379999998 69999999888 56999999999654
No 6
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=98.31 E-value=1.1e-06 Score=90.75 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=73.4
Q ss_pred HHHHHHHhcC--CC-CEEEEEecCCC-CCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHH
Q psy702 187 VTKLILSLAR--DG-SCVSLGTGYFN-LTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFL 260 (308)
Q Consensus 187 ~~~~ll~~~~--~~-~~l~i~TpYFn-~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~ 260 (308)
.+..+|..|. +. ..|+| |+||. +++.+.++|. +++|++|+||+.... .|-.. ....++
T Consensus 351 ~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d~~I~~AL~~AA~rGV~VrVLvd~~a--~~~~~-------------~n~~~~ 414 (687)
T 1xdp_A 351 HVLELLRQASFDPSVLAIKI-NIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQA--RFDEE-------------ANIHWA 414 (687)
T ss_dssp HHHHHHHHHHHCTTEEEEEE-EESSCCTTCHHHHHHHHHHHTTCEEEEEECTTC--SSTTT-------------TTTTTT
T ss_pred hHHHHHHHHhhCCcceEEEE-EeeeecCcHHHHHHHHHHHhcCCEEEEEECCCc--ccchh-------------hHHHHH
Confidence 3445666661 11 37888 99999 9999999888 569999999998763 22111 112346
Q ss_pred HHhhcCceEEEEEccCCceEEeeEEEEecCCCCCCcE---EEEeCCCCCC
Q psy702 261 SRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVL---TLIGSPNFGI 307 (308)
Q Consensus 261 ~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~---t~IGSsNf~~ 307 (308)
++|.++||++++|. +|.-.|+|.+.||.... ..+ +.|||.||+.
T Consensus 415 ~~L~~aGV~V~~~~-~~~k~H~Ki~VID~re~--~~i~~~a~iGS~N~d~ 461 (687)
T 1xdp_A 415 KRLTEAGVHVIFSA-PGLKIHAKLFLISRKEN--GEVVRYAHIGTGNFNE 461 (687)
T ss_dssp HHHHHHTCEEEECC-TTCEECCEEEEEEEEET--TEEEEEEEEESSCSCT
T ss_pred HHHHHCCCEEEEec-CCccccceEEEEEeccC--CeEEEEEEEeCCcCCc
Confidence 67778999999885 77779999999983211 244 8999999974
No 7
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=98.15 E-value=3.3e-06 Score=74.28 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcC
Q psy702 189 KLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNL 266 (308)
Q Consensus 189 ~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~ 266 (308)
..+|..| +.+|.|+. |+-..+++.++|. +++||+|+||+-+..+.... ..+..+...
T Consensus 64 i~~I~~A--~~sI~i~~-Y~~~~~~I~~aL~~Aa~RGV~VRii~D~~~~~~~~------------------~~~~~~~~~ 122 (220)
T 4gel_A 64 VEQIDRA--VYSIDLAI-YTFTSLFLADSIKRALQRGVIIRIISDGEMVYSKG------------------SQISMLAQL 122 (220)
T ss_dssp HHHHHTC--SSEEEEEC-SCBCCHHHHHHHHHHHHHTCEEEEECCTTTTTSTT------------------CHHHHHHHT
T ss_pred HHHHHHh--hhEEEEEE-EEeCCHHHHHHHHHHHHcCCeEEEEEechhhhhhH------------------HHHHHHHhc
Confidence 3444555 89999997 8888999999888 56999999999654332111 012333445
Q ss_pred ceEEEEEccCCceEEeeEEEEecCC--------------CCCCcEEEEeCCCCC
Q psy702 267 KVAMFEYVRSGWTYHAKGLWYSESP--------------GSKPVLTLIGSPNFG 306 (308)
Q Consensus 267 ~v~i~Ey~r~gwtfHaKGlwi~~~~--------------~~~p~~t~IGSsNf~ 306 (308)
++.+..+. .+...|.|.+++|... .....+.++||.||+
T Consensus 123 ~~~~~~~~-~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N~t 175 (220)
T 4gel_A 123 GVPVRVPI-TTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWT 175 (220)
T ss_dssp TCCEEECC-SSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCCBS
T ss_pred CCcEEeec-ccccccceeEEEcchhcccccccccceeccccccceEEecCcccc
Confidence 66666554 4558899999997210 000257899999996
No 8
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=97.95 E-value=1.5e-05 Score=82.26 Aligned_cols=82 Identities=6% Similarity=0.071 Sum_probs=54.6
Q ss_pred HHHHhc--CCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEe-------cCc-CCCCCCCCcccccChhHHHHHHHH
Q psy702 190 LILSLA--RDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLM-------AHP-TANGFLGARGAAGGIPYAYTALAA 257 (308)
Q Consensus 190 ~ll~~~--~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~-------asp-~ANgF~~s~g~sg~IP~~Y~~~~~ 257 (308)
..+..| ++..+|+|.++| .++++++++|. ..+||+|+||+ |.. .++.... +
T Consensus 526 ~eI~~Ak~G~~a~I~ik~n~-l~D~~ii~aL~~As~~GV~V~LIVRGiC~L~Pgv~~sdni~V----------------~ 588 (705)
T 2o8r_A 526 REIENVKRGKRGYMLLKMNG-LQDKNVITQLYRASEAGVEIDLIVRGICCLVPDMPQSRNIRV----------------T 588 (705)
T ss_dssp HHHHHHHTTCCCEEEEEESC-BCCHHHHHHHHHHHHTTCEEEEEESSCBCSCCSSGGGTTEEE----------------E
T ss_pred HHHHHHhcCCCCEEEEEcCC-CCCHHHHHHHHHHHHCCCeEEEEEccccccCCCCCCCCCeEE----------------E
Confidence 344444 234599999999 89999999888 56999999999 551 1232211 2
Q ss_pred HHHHHhhcCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 258 RFLSRVSNLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 258 ~f~~~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+++.++++++ +||+|..+ + + ..+.|||+||.
T Consensus 589 Sivgr~Leh~-RIy~f~~g-----------d---~---~~~~IGSAn~m 619 (705)
T 2o8r_A 589 RLVDMYLEHS-RIWCFHNG-----------G---K---EEVFISSADWM 619 (705)
T ss_dssp ECCSSSEECC-CEEEECGG-----------G---S---CEEEEESCCBC
T ss_pred eeHHHHHhcC-EEEEEECC-----------C---C---cEEEEeccccc
Confidence 2344445565 77777422 1 2 47899999986
No 9
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=97.39 E-value=0.00031 Score=57.71 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=43.4
Q ss_pred cCcceeEEEEecCc-EEeecccCCcCcccccCcceEEecCcchHHHHHHHHHHHH
Q psy702 48 IGLQHMKFYLIDNC-VIITGANLSGDYFTSRQDRYMIIQDHKPLSDFFDDLSRVL 101 (308)
Q Consensus 48 ~Gv~H~K~yvfDd~-viiSGANLs~~YftnRqDRY~~i~~~~~lad~~~~lv~~v 101 (308)
.|..|.|++|+||. ++++++|++...+....+--+.+++.+++++.+.+..+..
T Consensus 90 ~~~~H~K~~iiD~~~~~iGS~N~~~~~~~~n~E~~~~i~~~~~l~~~~~~~f~~~ 144 (155)
T 1byr_A 90 FPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLEHWQDR 144 (155)
T ss_dssp SSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred cccccceEEEECCCEEEEECCCCCccccccCcccEEEEcCcHHHHHHHHHHHHHH
Confidence 47899999999997 7777899999888777777888888547777777666554
No 10
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=97.27 E-value=0.00029 Score=69.32 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=63.2
Q ss_pred HHHHHHhcCCCCEEEEEecCCCCCH---HHHHHHH--cCC--CCcEEEEecCcCC-CCCCCCcccccChhHHHHHHHHHH
Q psy702 188 TKLILSLARDGSCVSLGTGYFNLTQ---EYVRAML--DKP--RVNYSVLMAHPTA-NGFLGARGAAGGIPYAYTALAARF 259 (308)
Q Consensus 188 ~~~ll~~~~~~~~l~i~TpYFn~~~---~~~~~L~--~~~--~~~v~Ii~asp~A-NgF~~s~g~sg~IP~~Y~~~~~~f 259 (308)
+..++..| +++|+|++.||.+++ .+.++|. +++ |++|+||+.+-.+ -|..++... ....++
T Consensus 42 l~~~I~~A--~~~I~i~~~~~~~d~~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~~~~---------~~~~~~ 110 (458)
T 3hsi_A 42 IIELIRNA--KKRIYVTALYWQKDEAGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGAEKS---------ATNADW 110 (458)
T ss_dssp HHHHHHTC--SSEEEEEESCBCSSHHHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC--------------CCHHHH
T ss_pred HHHHHHhc--CCEEEEEEEEEecCcHHHHHHHHHHHHHhcCCCCEEEEEEECccccccccccccc---------cccHHH
Confidence 34455555 899999999999986 8888776 445 9999999986321 111222110 012456
Q ss_pred HHHhhcCc----eE--EEEEc----cCCceEEeeEEEEecCCCCCCcEEEEeCCCCC
Q psy702 260 LSRVSNLK----VA--MFEYV----RSGWTYHAKGLWYSESPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 260 ~~~l~~~~----v~--i~Ey~----r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~ 306 (308)
+.+|.+.| |+ ++.+. +.....|.|.+.+| ..+.+.| .|++
T Consensus 111 ~~~L~~~g~nv~v~~~~f~~p~~~~~~~~r~H~Ki~viD------~~v~~~G-~Ni~ 160 (458)
T 3hsi_A 111 YCEQRQTYQLPDDPNMFFGVPINTREVFGVLHVKGFVFD------DTVLYSG-ASIN 160 (458)
T ss_dssp HHHHHHHHTCTTCCCCEEEECSSSSGGGCCEECCEEEET------TEEEEES-CCBS
T ss_pred HHHHHhhCCCceEeeeecCCccccccccCcceeeEEEEC------CCEEEEe-eecC
Confidence 66665545 55 44421 11236899999998 2566666 8876
No 11
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=97.11 E-value=0.00072 Score=58.85 Aligned_cols=94 Identities=16% Similarity=0.250 Sum_probs=61.6
Q ss_pred hhhhHHHHHhcCCceEEEEeeCCCCc--------ccccccCCCccccccCcceeEEEEecCc-EEeecccCCcCcccccC
Q psy702 8 KTLLSPIVKQFSHNCHVSFYHTPDLR--------WPLNRLLPHRYNELIGLQHMKFYLIDNC-VIITGANLSGDYFTSRQ 78 (308)
Q Consensus 8 ~~~l~~l~~~~~~~v~i~LyhtP~l~--------g~~~~~~P~r~nE~~Gv~H~K~yvfDd~-viiSGANLs~~YftnRq 78 (308)
..++.-|++.-..+|+|++--..... -+.+.=+|.|...-.|.+|.|++|+|+. +++.|+|++..+|..-.
T Consensus 72 ~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~H~K~~viD~~~~~~GS~N~t~~~~~~n~ 151 (196)
T 4ggj_A 72 PQLGRAVQLLHQRGVRVRVITDCDYMALNGSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNR 151 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCC---CCHHHHHHHTTCEEEECCSSSCCCCEEEEETTTEEEEESCCBCHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccccccHHHHHHHHhcCCCcccccccccccCcEEEEcceEEEecCccCChhhhcccc
Confidence 34555565554456777765432211 1222336677777789999999999998 55567999999987766
Q ss_pred cceEEecCcchHHH-HHHHHHHHHh
Q psy702 79 DRYMIIQDHKPLSD-FFDDLSRVLC 102 (308)
Q Consensus 79 DRY~~i~~~~~lad-~~~~lv~~v~ 102 (308)
+--+++.| ++++. |-..|-+.|.
T Consensus 152 E~~~~i~~-~~~~~~~~~~F~~~W~ 175 (196)
T 4ggj_A 152 ENVLIMED-TEYVRLFLEEFERIWE 175 (196)
T ss_dssp EEEEEECC-HHHHHHHHHHHHHHHH
T ss_pred eeEEEEEC-HHHHHHHHHHHHHHHH
Confidence 66667777 77655 4455555663
No 12
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=96.24 E-value=0.019 Score=56.68 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=60.5
Q ss_pred HHHHHHHHhc-CCCCEEEEEecC-CCCC---HHHHHHHH--cCCC--CcEEEEecCcCCCCCCCCcccccChhHHHHHHH
Q psy702 186 RVTKLILSLA-RDGSCVSLGTGY-FNLT---QEYVRAML--DKPR--VNYSVLMAHPTANGFLGARGAAGGIPYAYTALA 256 (308)
Q Consensus 186 ~~~~~ll~~~-~~~~~l~i~TpY-Fn~~---~~~~~~L~--~~~~--~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~ 256 (308)
+....+++.+ .++++|+|++-+ |..+ ..+.++|. +++| ++|+||+-+- |.+... .+|
T Consensus 66 ~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~~g~~i~~aL~~aa~rGp~V~Vril~D~~---g~~~~~----~~~------- 131 (506)
T 1v0w_A 66 RLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNKLKVRILVGAA---PVYHMN----VIP------- 131 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEESSCCCHHHHHHHHHHHHHHHHTTCCEEEEEEEECC---C--CCC----CHH-------
T ss_pred HHHHHHHHHHHHhccEEEEEEeeccCCChHHHHHHHHHHHHHhCCCCcEEEEEEeCc---cccccc----cCC-------
Confidence 4445444433 238999999877 4543 46777666 4689 9999999741 111111 122
Q ss_pred HHHHHHhhcC------ceEEE--EEc---cCCceEEeeEEEEecCCCCCCcEEEEeCCCC
Q psy702 257 ARFLSRVSNL------KVAMF--EYV---RSGWTYHAKGLWYSESPGSKPVLTLIGSPNF 305 (308)
Q Consensus 257 ~~f~~~l~~~------~v~i~--Ey~---r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf 305 (308)
+.++++|.+. .+.++ .|. ......|.|.+.|| ..+.++||.|+
T Consensus 132 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~r~H~K~~ViD------~~~a~~Gg~Nl 185 (506)
T 1v0w_A 132 SKYRDELTAKLGKAAENITLNVASMTTSKTAFSWNHSKILVVD------GQSALTGGINS 185 (506)
T ss_dssp HHHHHHHHHHHGGGGGGEEEEEEEECSBTTTTBCBCCCEEEET------TTEEEEESCCC
T ss_pred HHHHHHHHhcccceeecCccccccccccCCccccceeeEEEEC------CcEEEeecccc
Confidence 3444544332 23333 343 12337899999997 36899999998
No 13
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=94.30 E-value=0.14 Score=52.88 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=69.1
Q ss_pred HHHHHHhc--CCCC-EEEEEecCCCC-CHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHH
Q psy702 188 TKLILSLA--RDGS-CVSLGTGYFNL-TQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLS 261 (308)
Q Consensus 188 ~~~ll~~~--~~~~-~l~i~TpYFn~-~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~ 261 (308)
+..+|..| +++. .|. .|-|..- ...++++|. +++|++|+||+--. |- |. +.+...+.+
T Consensus 357 vi~~I~~A~~DP~V~sIk-~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~-ar-fd-------------ee~ni~wa~ 420 (705)
T 2o8r_A 357 VVRLLMEAAISPDVSEIR-LTQYRVAENSSIISALEAAAQSGKKVSVFVELK-AR-FD-------------EENNLRLSE 420 (705)
T ss_dssp HHHHHHHHHTCTTEEEEE-EEESCCCSCCHHHHHHHHHHHTTCEEEEEECCC-SC-C-----------------CHHHHH
T ss_pred HHHHHHHhccCCCceEEE-EEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCC-CC-cc-------------hhhhHHHHH
Confidence 44466665 1222 455 5777665 678999888 56999999999843 32 22 112345577
Q ss_pred HhhcCceEEEEEccCCceEEeeEEEEecC---CCCCCcEEEEeCCCCCC
Q psy702 262 RVSNLKVAMFEYVRSGWTYHAKGLWYSES---PGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 262 ~l~~~~v~i~Ey~r~gwtfHaKGlwi~~~---~~~~p~~t~IGSsNf~~ 307 (308)
+|.++||++... -.|.--|+|-+.|+.. +...+..+.+|+.||+-
T Consensus 421 ~Le~aGv~Vv~g-~~~lk~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~ 468 (705)
T 2o8r_A 421 RMRRSGIRIVYS-MPGLKVHAKTALILYHTPAGERPQGIALLSTGNFNE 468 (705)
T ss_dssp HHHHHTCEEEEC-CTTCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSC
T ss_pred HHHHCCCEEEEc-cCCCCceeEEEEEecccccCCceeEEEeccccceee
Confidence 888899998543 3788999999999954 22335568889999963
No 14
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=93.25 E-value=0.08 Score=45.85 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=54.0
Q ss_pred hhhhhHHHHHhcCCceEEEEeeCCCCc--------ccccccCCCccccccCcceeEEEEecC------------------
Q psy702 7 SKTLLSPIVKQFSHNCHVSFYHTPDLR--------WPLNRLLPHRYNELIGLQHMKFYLIDN------------------ 60 (308)
Q Consensus 7 s~~~l~~l~~~~~~~v~i~LyhtP~l~--------g~~~~~~P~r~nE~~Gv~H~K~yvfDd------------------ 60 (308)
+..++.-|++.-..+|+|++--.+.-. .+.+.-++.+....-|..|.|..|+|+
T Consensus 83 ~~~I~~aL~~Aa~RGV~VRii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~ 162 (220)
T 4gel_A 83 SLFLADSIKRALQRGVIIRIISDGEMVYSKGSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRP 162 (220)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCTTTTTSTTCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCC
T ss_pred CHHHHHHHHHHHHcCCeEEEEEechhhhhhHHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceecccc
Confidence 344555566554445777765432211 112233445555556777777777774
Q ss_pred --c-EEeecccCCcCcccc-cCcceEEecCcchHHHHHH-HHHHHHhcc
Q psy702 61 --C-VIITGANLSGDYFTS-RQDRYMIIQDHKPLSDFFD-DLSRVLCKI 104 (308)
Q Consensus 61 --~-viiSGANLs~~Yftn-RqDRY~~i~~~~~lad~~~-~lv~~v~~~ 104 (308)
. ++..++|++...|.. +-| -+++.+ +++++-|. .|-+.|.++
T Consensus 163 D~~~v~~GS~N~t~~s~~~N~E~-~~vi~~-~~~a~~~~~~F~~~W~~~ 209 (220)
T 4gel_A 163 CYSIVISGSVNWTALGLGGNWEN-CIITAD-DKLTATFQAEFQRMWRAF 209 (220)
T ss_dssp CCCEEEEESCCBSHHHHHTSBEE-EEEECC-HHHHHHHHHHHHHHHHHS
T ss_pred ccceEEecCccccccccccCceE-EEEEEC-HHHHHHHHHHHHHHHHhc
Confidence 4 566679999888754 433 345556 76655544 455666443
No 15
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=87.22 E-value=1.3 Score=40.34 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=65.8
Q ss_pred CCCEEEEEecCCC------CCHHHHHHHHcCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhhcCceEE
Q psy702 197 DGSCVSLGTGYFN------LTQEYVRAMLDKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVSNLKVAM 270 (308)
Q Consensus 197 ~~~~l~i~TpYFn------~~~~~~~~L~~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~~~~v~i 270 (308)
.+-.+++.+|+=| +.+.+.+. .++|++|.+|.+...++. + -+++-.+++++.||..
T Consensus 34 gegT~~~isgFAnYnGgvrfy~~f~~h--~~~Ggkv~~IlGgstsQr-----l-----------TSKQavEElL~cGvev 95 (358)
T 2c1l_A 34 GEGTLYLISGFSNYNGGVRFYETFTEH--INQGGRVIAILGGSTSQR-----L-----------SSRQVVEELLNRGVEV 95 (358)
T ss_dssp TSSEEEEEESSBCGGGTTTTHHHHHHH--HHTTCEEEEEEECCSSSC-----C-----------BBHHHHHHHHHTTCEE
T ss_pred CCceEEEEEeeeccCCceeecHHHHHH--HhcCCcEEEEEccccccc-----c-----------cHHHHHHHHHhcCCce
Confidence 3568899998866 55666663 457899999999777663 2 2345577888899999
Q ss_pred EEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCCCC
Q psy702 271 FEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNFGI 307 (308)
Q Consensus 271 ~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf~~ 307 (308)
+-++|.. -||||-.....++ ...-+|||-||..
T Consensus 96 ~IiNrkR-i~HaK~Yg~~~n~---g~~LIV~SgNfT~ 128 (358)
T 2c1l_A 96 HIINRKR-ILHAKLYGTSNNL---GESLVVSSGNFTG 128 (358)
T ss_dssp EEEECSS-CBCCEEEEEEETT---EEEEEEESCCBST
T ss_pred EEeeeee-ecchhhhcccCCC---ceEEEEecCCccc
Confidence 9888655 9999988876433 3567899999964
No 16
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=75.04 E-value=7.9 Score=36.08 Aligned_cols=83 Identities=7% Similarity=-0.150 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH--cCCCCcEEEEecCcCCCCCCCCcccccChhHHHHHHHHHHHHHhh
Q psy702 187 VTKLILSLARDGSCVSLGTGYFNLTQEYVRAML--DKPRVNYSVLMAHPTANGFLGARGAAGGIPYAYTALAARFLSRVS 264 (308)
Q Consensus 187 ~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~--~~~~~~v~Ii~asp~ANgF~~s~g~sg~IP~~Y~~~~~~f~~~l~ 264 (308)
-+..|+..| +.+|++.+++-. .+.+..+|. .++|++|++|+.+. ++. ..++ | . ..
T Consensus 123 ri~eli~~A--~~eI~i~~~~~~-l~~l~~~L~~a~~RGV~Vrvi~~~~--~d~---a~~~------~-------~--~~ 179 (342)
T 3qph_A 123 MFRESLYSA--KNEVIVVTPSEF-FETIREDLIKTLERGVTVSLYIDKI--PDL---SEFK------G-------K--GN 179 (342)
T ss_dssp HHHHHHHHC--SSEEEEEECHHH-HHHHHHHHHHHHHTTCEEEEEESSC--CCC---GGGS------S-------S--SE
T ss_pred HHHHHHHhh--heEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECCC--CCh---hhhh------c-------c--cc
Confidence 345677888 889999887643 244555454 46999999999543 331 0000 0 0 12
Q ss_pred cCceEEEEEccCCceEEeeEEEEecCCCCCCcEEEEeCCCC
Q psy702 265 NLKVAMFEYVRSGWTYHAKGLWYSESPGSKPVLTLIGSPNF 305 (308)
Q Consensus 265 ~~~v~i~Ey~r~gwtfHaKGlwi~~~~~~~p~~t~IGSsNf 305 (308)
..+|++++ .++++ +.+| ...++||+.|.
T Consensus 180 ~~~vR~~~--~~p~l-----~ivD------~~~alv~~~~~ 207 (342)
T 3qph_A 180 FFVRQFYK--LNHLI-----GMTD------GKEVVTIQNAT 207 (342)
T ss_dssp EEEEECSC--CCSEE-----EEET------TTEEEEECSSS
T ss_pred ceEEEEcC--CCcEE-----EEEE------CCEEEEecccc
Confidence 34566665 35543 5555 25789999886
No 17
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=35.14 E-value=18 Score=35.30 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCcEEEEecCcC----CCCCCCCcccccChhHHHHHHHH-HHHHHhhcCceEEEEE-----ccCCceEEeeEEEEecCCC
Q psy702 223 RVNYSVLMAHPT----ANGFLGARGAAGGIPYAYTALAA-RFLSRVSNLKVAMFEY-----VRSGWTYHAKGLWYSESPG 292 (308)
Q Consensus 223 ~~~v~Ii~asp~----ANgF~~s~g~sg~IP~~Y~~~~~-~f~~~l~~~~v~i~Ey-----~r~gwtfHaKGlwi~~~~~ 292 (308)
...++||-|+++ +.+-|.+ .|-||+-.....+ .|++.. ++.| .|.+.+-|.|...-..++.
T Consensus 290 ~~~~~iifPT~e~Vr~S~~G~~~---ggsi~~~~~~~~~~~~l~~~------l~~w~~~~~~R~~a~pHiKty~r~~~~~ 360 (464)
T 1jy1_A 290 SVPLYLIYPSVENVRTSLEGYPA---GGSLPYSIQTAEKQNWLHSY------FHKWSAETSGRSNAMPHIKTYMRPSPDF 360 (464)
T ss_dssp CCCEEEECCBHHHHHTSSSCGGG---GGGSCCCHHHHTTCGGGGGG------EECCCCGGGTCTTSCBCCEEEEEECTTS
T ss_pred CCceEEEcCCHHHHHhcccccCC---cceeeccchhhhhhhhhHHH------HHHhccCccCCCCcCCceeeEEecCCCC
Confidence 467999999853 2222222 3456655443322 243332 2333 3688999999966653332
Q ss_pred CCCcEEEEeCCCCC
Q psy702 293 SKPVLTLIGSPNFG 306 (308)
Q Consensus 293 ~~p~~t~IGSsNf~ 306 (308)
..-.+.++||+|+.
T Consensus 361 ~~~~W~lltSaNLS 374 (464)
T 1jy1_A 361 SKIAWFLVTSANLS 374 (464)
T ss_dssp SEEEEEEEESCCBS
T ss_pred CeecEEEEccccCC
Confidence 23468999999985
No 18
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=31.54 E-value=19 Score=35.93 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=44.7
Q ss_pred CCcEEEEecCcCC--CCCCCCcccccChhHHHH---HHHHHHHHHhhcCceEEEEE-------ccCCceEEeeEEEEec-
Q psy702 223 RVNYSVLMAHPTA--NGFLGARGAAGGIPYAYT---ALAARFLSRVSNLKVAMFEY-------VRSGWTYHAKGLWYSE- 289 (308)
Q Consensus 223 ~~~v~Ii~asp~A--NgF~~s~g~sg~IP~~Y~---~~~~~f~~~l~~~~v~i~Ey-------~r~gwtfHaKGlwi~~- 289 (308)
...++||-|+++. +..-|- .-.|-||.-|. .....|++.. -..|.. .|.+-+-|.|.+.-..
T Consensus 367 ~~~~~IIfPT~e~Vr~S~~G~-~~Ggsi~~~~~~~~~~~~~~l~~~----~~~w~~~~~~~~s~R~~a~PHiKty~r~~~ 441 (544)
T 1q32_A 367 KIKPYIIFPTEQEFVTSPLKW-SSSGWFHFQYLQKKSYYEMLRNKF----KVFYKQDPAMVTRRRGTTPAHSKFYMHCAT 441 (544)
T ss_dssp TEEEEEECCBSGGGTTSTTGG-GGGGGCBCCCGGGHHHHHHHHHTS----CCEEECCTTTSCTTTTTCCBCCEEEEEEEE
T ss_pred CCCceEEcCCHHHHhhccccc-CccceEEeccchhhhhhhHHHhhh----hhhccCCCccccCCCCCccCceEEEEeecc
Confidence 4578999998741 111111 12455775443 2233444432 223444 4789999999875432
Q ss_pred ---------CCCCCCcEEEEeCCCCC
Q psy702 290 ---------SPGSKPVLTLIGSPNFG 306 (308)
Q Consensus 290 ---------~~~~~p~~t~IGSsNf~ 306 (308)
++...-.+.++||+|+.
T Consensus 442 ~~~~~~~~~~~~~~i~W~lltSaNLS 467 (544)
T 1q32_A 442 NSAGPCDASQVFKELEWCLYTSANLS 467 (544)
T ss_dssp CC-------CTTSEESEEEEESCCBS
T ss_pred ccccccccCCCccceeEEEEccccCC
Confidence 11223468999999984
No 19
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=31.00 E-value=34 Score=23.52 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=20.6
Q ss_pred CceEEEEeeCCCCcccccccCCCcc
Q psy702 20 HNCHVSFYHTPDLRWPLNRLLPHRY 44 (308)
Q Consensus 20 ~~v~i~LyhtP~l~g~~~~~~P~r~ 44 (308)
..|.|+||.+|.-....+..+|.-+
T Consensus 30 kGVkIgLFk~P~tGk~fR~k~pddy 54 (56)
T 3kxt_A 30 KGVKIGLFKDPETGKYFRHKLPDDY 54 (56)
T ss_dssp CCEEEEEEECTTTCCEEEEECCTTC
T ss_pred CceEEEEEECCCCCcEeeeeCcCcC
Confidence 5699999999988887788888643
No 20
>1h7z_A Adenovirus fibre protein; cell receptor recognition, receptor; 1.6A {Human adenovirus type 3} SCOP: b.21.1.1
Probab=29.69 E-value=19 Score=31.16 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=22.5
Q ss_pred EEEecCc-EEeecccCCcCcccccCc
Q psy702 55 FYLIDNC-VIITGANLSGDYFTSRQD 79 (308)
Q Consensus 55 ~yvfDd~-viiSGANLs~~YftnRqD 79 (308)
.+.||++ +++++.||+..|+.-|++
T Consensus 69 ~L~FD~~G~Ll~~s~l~~~~Wg~R~~ 94 (194)
T 1h7z_A 69 ELYFDATGHILPDSSSLKTDLELKYK 94 (194)
T ss_dssp EEEECTTSCBCTTTSSBCSCCEESSC
T ss_pred EEEECCCCCCccCCCcccccccccCC
Confidence 3568998 999999999999999997
No 21
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=29.34 E-value=2.5e+02 Score=23.40 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=54.0
Q ss_pred cCCCCCCCCcHHHHHHHHHhcCCCCEEEEEecCCCCCHHHHHHHH------cC--CCCcEEEEecCcCCCCCCCCccccc
Q psy702 175 ELPPLHIQLDSRVTKLILSLARDGSCVSLGTGYFNLTQEYVRAML------DK--PRVNYSVLMAHPTANGFLGARGAAG 246 (308)
Q Consensus 175 q~G~~~i~~d~~~~~~ll~~~~~~~~l~i~TpYFn~~~~~~~~L~------~~--~~~~v~Ii~asp~ANgF~~s~g~sg 246 (308)
+-|..|...| .++-.-|.. .-.+|+|.-||.--+-.+.+-+. .. .-+.|+++|.....++
T Consensus 15 ~en~tG~SYe-~LFg~YL~~--~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~--------- 82 (163)
T 4a5z_A 15 EENATGFSYE-SLFREYLNE--TVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDEGIE--------- 82 (163)
T ss_dssp CTTCCCCCHH-HHHGGGCCT--TCCEEEEECSCCCSHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCSTT---------
T ss_pred ecCCccccHH-HHHHHHHhC--CceEEEEECCccccHHHHHHHHHHHHHHHhcCCCccEEEEEeCCccccC---------
Confidence 4455554444 333333332 13789999999988887766221 22 2256899998543211
Q ss_pred ChhHHHHHHHHHHHHH----hhcCceEE-EEEccCCceEEeeEEEEe
Q psy702 247 GIPYAYTALAARFLSR----VSNLKVAM-FEYVRSGWTYHAKGLWYS 288 (308)
Q Consensus 247 ~IP~~Y~~~~~~f~~~----l~~~~v~i-~Ey~r~gwtfHaKGlwi~ 288 (308)
......-+.+ +...||.+ ||| .+ |+|..-|.++
T Consensus 83 ------~~~Q~~~L~~ik~sL~~~gI~l~~~f--s~-tiHDR~I~~d 120 (163)
T 4a5z_A 83 ------QVQQSRGLQEIEESLRSHGVLLEVQY--SS-SIHDREIRFN 120 (163)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCEEEEEE--CT-TCCCCEEEET
T ss_pred ------HHHHHHHHHHHHHHHHHCCCEEEEEe--CC-CccceEEEec
Confidence 1122222333 36688887 677 45 8999999886
No 22
>2qlk_A Fiber, PIV; fibre, CD46-bindning, viral protein; 2.02A {Human adenovirus 35} PDB: 3bq4_A 3l88_A 3l89_A*
Probab=24.85 E-value=26 Score=30.73 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=22.4
Q ss_pred EEecCc-EEeecccCCcCcccccCc
Q psy702 56 YLIDNC-VIITGANLSGDYFTSRQD 79 (308)
Q Consensus 56 yvfDd~-viiSGANLs~~YftnRqD 79 (308)
+.||++ +|+++.||...|+.-|++
T Consensus 86 L~FD~~G~Ll~~s~l~k~yWg~R~~ 110 (213)
T 2qlk_A 86 LYFDSSGNLLTEESDLKIPLKNKSS 110 (213)
T ss_dssp EEECTTSCBCTTTSSBCSCCEECCC
T ss_pred EEECCCCCCccCCCcccccccccCC
Confidence 568998 999999999999999999
No 23
>1knb_A Adenovirus type 5 fiber protein; cell receptor recognition; 1.70A {Human adenovirus 5} SCOP: b.21.1.1
Probab=23.63 E-value=23 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.7
Q ss_pred EEecCc-EEeecccCCcCcccccCcceE
Q psy702 56 YLIDNC-VIITGANLSGDYFTSRQDRYM 82 (308)
Q Consensus 56 yvfDd~-viiSGANLs~~YftnRqDRY~ 82 (308)
+.||++ +++++.||...|+.-|++--.
T Consensus 74 L~FD~~G~Ll~~s~l~~~~W~~R~~~s~ 101 (196)
T 1knb_A 74 IRFDENGVLLNNSFLDPEYWNFRNGDLT 101 (196)
T ss_dssp EEECTTSCBCTTCSBCGGGCEEEETTEE
T ss_pred EEECCCCCCCcCCCCcccccccccCCcc
Confidence 468998 999999999999999975433
No 24
>3cnc_A Fiber protein; adenovirus fiber KNOB, viral protein; 2.40A {Human adenovirus 16}
Probab=22.61 E-value=25 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.8
Q ss_pred EEEecCc-EEeecccCCcCcccccCcc
Q psy702 55 FYLIDNC-VIITGANLSGDYFTSRQDR 80 (308)
Q Consensus 55 ~yvfDd~-viiSGANLs~~YftnRqDR 80 (308)
.+.||++ +|+++.||+..|+.-|++-
T Consensus 91 ~L~FD~~G~Ll~~s~l~~~yWg~R~~~ 117 (220)
T 3cnc_A 91 NLAFDNTGQIITYLSSLKSNLNFKDNQ 117 (220)
T ss_dssp EEEECTTSCBCGGGSSBCSCCEEEETT
T ss_pred EEEECCCCCCCcCCCccccccccccCC
Confidence 3568998 9999999999999999865
No 25
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=22.56 E-value=40 Score=32.96 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCCcEEEEecCcCCCCCCCCc---ccccChhHHHHHHHHHHHHHhhcCceEEEEEc-------cCCceEEe
Q psy702 213 EYVRAMLDKPRVNYSVLMAHPTANGFLGAR---GAAGGIPYAYTALAARFLSRVSNLKVAMFEYV-------RSGWTYHA 282 (308)
Q Consensus 213 ~~~~~L~~~~~~~v~Ii~asp~ANgF~~s~---g~sg~IP~~Y~~~~~~f~~~l~~~~v~i~Ey~-------r~gwtfHa 282 (308)
.+.+ .+.....+..||-|+++ | --.|. .-.|.||+-|....+++ ..+.+..--+|.|. |..-+=|.
T Consensus 281 ~~~~-~~~~~~~~~~iIfPTve-e-Vr~S~~Gy~aGgsip~~~~~~~~q~-~~l~~~~~~~~kw~~~~~~~~R~~a~PHi 356 (470)
T 3sq7_A 281 SLIN-EYSQRKIKPYIIFPTEQ-E-FVTSPLKWSSSGWFHFQYLQKKSYY-EMLRNKFKVFYKQDPAMVTRRRGTTPANS 356 (470)
T ss_dssp HHHH-HHHHTTEEEEEECCBTG-G-GTTSTTGGGGGGGCBCCCGGGHHHH-HHHHHTSCCEEECCTTTSCTTTTTCCBCC
T ss_pred chhh-hhccCCCCeEEEcCCHH-H-HhcCccccccCceeeecccchHHHH-HHHhcccceEecccCcCCCCCCCCcCCce
Confidence 4444 33334568899998774 2 22222 14577888876554331 22222112334443 23344699
Q ss_pred eEEEEecCC----------CCCCcEEEEeCCCCC
Q psy702 283 KGLWYSESP----------GSKPVLTLIGSPNFG 306 (308)
Q Consensus 283 KGlwi~~~~----------~~~p~~t~IGSsNf~ 306 (308)
|...=..+. .....|.++||+|+.
T Consensus 357 KtY~r~s~~~~~~~~~~~~~~~i~W~LlTSaNLS 390 (470)
T 3sq7_A 357 KFYMHCATNSAGPCDASQVFKELEWCLYTSANLS 390 (470)
T ss_dssp EEEEEEEC--------CCTTSEESEEEEESCCBS
T ss_pred EEEEEecccccccccccCCCceeeEEEEecccCC
Confidence 998843221 123678999999974
No 26
>1kac_A Protein (fiber KNOB protein); adhesion protein receptor complex, viral protein/receptor complex; 2.60A {Human adenovirus 12} SCOP: b.21.1.1 PDB: 1nob_A 1p6a_A 1p69_A
Probab=21.79 E-value=30 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred EEecCc-EEeecccC---CcCcccccCcc
Q psy702 56 YLIDNC-VIITGANL---SGDYFTSRQDR 80 (308)
Q Consensus 56 yvfDd~-viiSGANL---s~~YftnRqDR 80 (308)
+.||++ +++++.|| +..|+.-|++-
T Consensus 66 L~FD~~G~Ll~~s~l~~~~~~~Wg~R~~~ 94 (185)
T 1kac_A 66 LVFDEQGRLITSTPTALVPQASWGYRQGQ 94 (185)
T ss_dssp EEECTTSCBCCSTTBSBCTTSCCEEEETT
T ss_pred EEECCCCCCCcCCcccccccccceeccCC
Confidence 568998 99999999 89999999743
Done!