RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy702
         (308 letters)



>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp.
           [TaxId: 1931]}
          Length = 258

 Score = 30.8 bits (69), Expect = 0.15
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 23  HVSFYHTPDLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITG-ANLSGDYFTSRQDRY 81
             +   T ++           +N      H K  ++D    +TG  N   D +       
Sbjct: 142 KAAENITLNVASMTTSKTAFSWN------HSKILVVDGQSALTGGINSWKDDYLDTTHPV 195


>d2foka1 a.4.5.12 (A:5-143) Restriction endonuclease FokI,
          N-terminal (recognition) domain {Flavobacterium
          okeanokoites [TaxId: 244]}
          Length = 139

 Score = 28.4 bits (63), Expect = 0.62
 Identities = 8/48 (16%), Positives = 16/48 (33%)

Query: 33 RWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITGANLSGDYFTSRQDR 80
              N  +P    E    + +   +  + +I T   L G   + R + 
Sbjct: 31 NEVKNIKIPTLVKESKIQKELVAIMNQHDLIYTYKELVGTGTSIRSEA 78


>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp.
           [TaxId: 1931]}
          Length = 246

 Score = 28.6 bits (63), Expect = 0.81
 Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)

Query: 31  DLRWPLNRLLPHRYNELIGLQHMKFYLIDNCVIITG-ANLSGDYFT 75
            L    +       +     QH K   +D+     G  NL   +  
Sbjct: 159 QLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWLQ 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,166,112
Number of extensions: 53630
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 7
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)