BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7022
         (124 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
          Length = 470

 Score = 30.4 bits (67), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 6  CNVCDCVVKDSINFLDHINGKKHQRNLGMSM 36
          CNVC   V  +INF   + GKKH+ NL   +
Sbjct: 39 CNVCTADVNATINF--DVGGKKHKLNLDFGL 67


>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
          Maritima Msb8
          Length = 367

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 12 VVKDSINFLDHINGKKHQRNLGMSMRVERSSLDQV 46
          + + SI +LD ING+ + R + +    E+S+ ++ 
Sbjct: 11 ICESSICYLDGINGRLYYRGIPVEELAEKSTFEET 45


>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
           U2 Snrnp
          Length = 402

 Score = 25.4 bits (54), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 3   GYYCNVCDCVVKDSINFLDHINGKKHQRN 31
           G YC  C    K S  F  H+ GK H++N
Sbjct: 292 GIYCPFCSRWFKTSSVFESHLVGKIHKKN 320


>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
           Gtp-Specific Succinyl-Coa Synthetase
          Length = 396

 Score = 25.4 bits (54), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 10  DCVVKDSINFLDHINGKKHQR---NLGMSMRVERSSLDQVKKRFDM 52
           + + K+ I+ ++ I   + QR   NLG    ++  + DQ+KK +++
Sbjct: 150 ELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNL 195


>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
           Specific Succinyl-Coa Synthetase
          Length = 396

 Score = 25.4 bits (54), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 10  DCVVKDSINFLDHINGKKHQR---NLGMSMRVERSSLDQVKKRFDM 52
           + + K+ I+ ++ I   + QR   NLG    ++  + DQ+KK +++
Sbjct: 150 ELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNL 195


>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase In Complex With Gtp
 pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase In Complex With Gdp
 pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase From Polyethylene Glycol
 pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
           Synthetase From Polyethylene Glycol With Chloride Ions
          Length = 395

 Score = 25.4 bits (54), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 10  DCVVKDSINFLDHINGKKHQR---NLGMSMRVERSSLDQVKKRFDM 52
           + + K+ I+ ++ I   + QR   NLG    ++  + DQ+KK +++
Sbjct: 149 ELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNL 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.136    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,642,102
Number of Sequences: 62578
Number of extensions: 38430
Number of successful extensions: 141
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)