Query psy7022
Match_columns 124
No_of_seqs 147 out of 227
Neff 4.9
Searched_HMMs 46136
Date Sat Aug 17 00:48:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4727|consensus 100.0 1.2E-45 2.6E-50 284.9 10.7 121 1-123 73-193 (193)
2 smart00451 ZnF_U1 U1-like zinc 99.0 1.3E-10 2.9E-15 66.5 2.4 33 1-33 1-33 (35)
3 PF12171 zf-C2H2_jaz: Zinc-fin 98.9 1.1E-09 2.5E-14 60.4 2.2 27 3-29 1-27 (27)
4 PF12874 zf-met: Zinc-finger o 98.7 7.9E-09 1.7E-13 55.4 1.9 25 4-28 1-25 (25)
5 PF08648 DUF1777: Protein of u 98.4 1.2E-07 2.6E-12 72.1 1.9 18 106-123 126-143 (180)
6 PF06220 zf-U1: U1 zinc finger 98.3 4E-07 8.7E-12 54.7 1.8 32 1-32 1-34 (38)
7 KOG0717|consensus 97.9 5.4E-06 1.2E-10 72.9 1.6 28 4-31 293-320 (508)
8 COG5188 PRP9 Splicing factor 3 97.5 5.5E-05 1.2E-09 65.2 2.6 30 2-31 237-266 (470)
9 KOG3454|consensus 97.2 0.00015 3.2E-09 56.2 1.6 32 1-32 1-34 (165)
10 PF00096 zf-C2H2: Zinc finger, 97.1 0.00027 5.8E-09 36.7 1.2 22 4-25 1-22 (23)
11 KOG3408|consensus 96.9 0.00032 6.9E-09 52.3 1.1 29 2-30 56-84 (129)
12 KOG3263|consensus 96.7 0.00068 1.5E-08 53.3 1.3 18 106-123 143-160 (196)
13 PF07535 zf-DBF: DBF zinc fing 96.7 0.0013 2.9E-08 41.6 2.3 43 3-50 5-47 (49)
14 PF13912 zf-C2H2_6: C2H2-type 96.6 0.0013 2.9E-08 35.3 1.4 22 4-25 2-23 (27)
15 KOG2837|consensus 96.5 0.00072 1.6E-08 56.4 0.2 54 3-56 25-83 (309)
16 PF13894 zf-C2H2_4: C2H2-type 96.4 0.0021 4.5E-08 32.6 1.4 21 4-24 1-21 (24)
17 PF12756 zf-C2H2_2: C2H2 type 96.3 0.0015 3.2E-08 43.3 0.7 29 3-31 50-78 (100)
18 COG5112 UFD2 U1-like Zn-finger 95.9 0.0025 5.4E-08 46.9 0.4 30 2-31 54-83 (126)
19 PHA02768 hypothetical protein; 95.8 0.0044 9.6E-08 40.2 1.2 24 2-25 4-27 (55)
20 PF03194 LUC7: LUC7 N_terminus 95.6 0.02 4.3E-07 46.6 4.6 42 4-57 191-235 (254)
21 KOG2384|consensus 95.5 0.0038 8.2E-08 50.2 0.1 30 2-32 83-112 (223)
22 PLN02748 tRNA dimethylallyltra 95.4 0.0088 1.9E-07 52.6 2.1 30 3-32 418-448 (468)
23 smart00355 ZnF_C2H2 zinc finge 95.3 0.0097 2.1E-07 30.2 1.2 21 4-24 1-21 (26)
24 smart00586 ZnF_DBF Zinc finger 95.1 0.011 2.4E-07 37.5 1.2 26 2-30 4-29 (49)
25 KOG3032|consensus 94.7 0.02 4.4E-07 47.0 2.1 30 1-31 33-62 (264)
26 KOG2785|consensus 94.4 0.013 2.8E-07 50.7 0.4 32 3-34 68-99 (390)
27 COG4049 Uncharacterized protei 94.0 0.016 3.5E-07 38.3 0.1 29 4-33 18-46 (65)
28 KOG0150|consensus 93.8 0.028 6.2E-07 47.7 1.3 30 2-31 9-39 (336)
29 PHA00616 hypothetical protein 91.9 0.048 1E-06 33.9 0.0 22 4-25 2-23 (44)
30 KOG0227|consensus 90.5 0.12 2.6E-06 41.6 1.0 32 1-32 51-82 (222)
31 PF14968 CCDC84: Coiled coil p 90.2 0.45 9.7E-06 40.6 4.3 30 3-32 58-93 (336)
32 KOG0796|consensus 90.0 0.3 6.4E-06 41.5 3.1 41 5-57 188-231 (319)
33 KOG2785|consensus 90.0 0.45 9.8E-06 41.4 4.2 58 1-58 1-59 (390)
34 COG5136 U1 snRNP-specific prot 89.7 0.1 2.2E-06 40.9 0.0 31 1-31 1-33 (188)
35 COG5246 PRP11 Splicing factor 88.6 0.23 4.9E-06 39.8 1.3 32 1-32 51-82 (222)
36 PF11931 DUF3449: Domain of un 88.5 0.14 2.9E-06 40.8 0.0 33 3-35 101-137 (196)
37 PF13913 zf-C2HC_2: zinc-finge 88.2 0.32 6.8E-06 26.3 1.3 20 4-24 3-22 (25)
38 PTZ00448 hypothetical protein; 86.7 0.43 9.3E-06 41.3 2.0 31 3-33 314-344 (373)
39 smart00734 ZnF_Rad18 Rad18-lik 85.5 0.47 1E-05 26.0 1.1 19 5-24 3-21 (26)
40 PF06658 DUF1168: Protein of u 83.5 5.2 0.00011 30.4 6.3 45 48-92 50-94 (142)
41 PF14968 CCDC84: Coiled coil p 82.8 0.48 1E-05 40.5 0.5 27 5-34 1-27 (336)
42 PF05605 zf-Di19: Drought indu 82.7 0.67 1.5E-05 28.8 1.1 23 3-26 2-24 (54)
43 PF04959 ARS2: Arsenite-resist 82.7 1.9 4E-05 34.7 3.9 25 3-27 77-101 (214)
44 PF13909 zf-H2C2_5: C2H2-type 81.1 1.1 2.3E-05 23.2 1.3 20 4-24 1-20 (24)
45 PF09237 GAGA: GAGA factor; I 80.4 1 2.2E-05 29.2 1.3 21 4-24 25-45 (54)
46 PF13465 zf-H2C2_2: Zinc-finge 80.0 0.79 1.7E-05 24.6 0.6 12 3-14 14-25 (26)
47 PF12756 zf-C2H2_2: C2H2 type 79.2 0.61 1.3E-05 30.6 0.0 24 6-30 2-25 (100)
48 PF04988 AKAP95: A-kinase anch 79.0 0.7 1.5E-05 36.0 0.3 47 4-50 92-140 (165)
49 KOG3792|consensus 74.0 1 2.3E-05 42.2 0.0 31 3-33 359-389 (816)
50 PF12855 Ecl1: Life-span regul 73.7 0.89 1.9E-05 28.0 -0.3 16 4-19 7-25 (43)
51 PF13821 DUF4187: Domain of un 73.0 1.9 4.1E-05 27.6 1.0 24 3-26 27-50 (55)
52 PHA00732 hypothetical protein 72.7 2.1 4.6E-05 29.1 1.3 21 4-24 2-22 (79)
53 PF04423 Rad50_zn_hook: Rad50 65.9 3 6.4E-05 25.9 0.8 13 5-17 22-34 (54)
54 PF15437 PGBA_C: Plasminogen-b 65.6 32 0.00069 24.2 6.0 48 39-86 32-79 (86)
55 KOG2482|consensus 65.3 2 4.3E-05 37.4 -0.1 28 3-30 195-222 (423)
56 KOG2636|consensus 65.3 5.7 0.00012 35.6 2.7 33 3-35 401-437 (497)
57 PHA00733 hypothetical protein 64.2 3.8 8.3E-05 30.0 1.3 22 3-24 73-94 (128)
58 KOG2636|consensus 63.9 11 0.00024 33.8 4.3 31 2-32 270-300 (497)
59 PF04780 DUF629: Protein of un 60.7 5.9 0.00013 35.3 2.0 21 4-24 58-78 (466)
60 KOG2462|consensus 59.5 4.3 9.4E-05 34.0 0.9 27 3-29 215-241 (279)
61 PF08790 zf-LYAR: LYAR-type C2 59.4 4.4 9.6E-05 22.9 0.7 19 4-23 1-19 (28)
62 KOG1144|consensus 58.8 37 0.00081 32.9 6.9 15 43-57 216-230 (1064)
63 PF02892 zf-BED: BED zinc fing 56.9 6.8 0.00015 22.9 1.2 21 3-23 16-40 (45)
64 COG5188 PRP9 Splicing factor 3 56.3 14 0.0003 32.6 3.5 30 3-32 374-404 (470)
65 KOG2505|consensus 55.8 7.7 0.00017 35.4 1.9 48 3-50 66-114 (591)
66 PF14616 DUF4451: Domain of un 55.3 5.9 0.00013 29.0 0.9 22 5-26 27-51 (124)
67 KOG4722|consensus 55.3 4.4 9.5E-05 36.5 0.3 47 5-51 495-551 (672)
68 KOG1842|consensus 52.9 5.2 0.00011 35.8 0.4 22 3-24 15-36 (505)
69 COG5200 LUC7 U1 snRNP componen 51.9 5 0.00011 32.9 0.1 26 5-30 187-215 (258)
70 KOG4055|consensus 51.4 62 0.0013 26.1 6.1 30 62-91 108-137 (213)
71 PRK02224 chromosome segregatio 47.5 60 0.0013 30.0 6.3 19 5-23 453-473 (880)
72 TIGR03831 YgiT_finger YgiT-typ 44.5 12 0.00025 21.6 0.9 14 2-15 31-44 (46)
73 PF04988 AKAP95: A-kinase anch 42.9 14 0.00031 28.8 1.4 44 4-47 1-45 (165)
74 KOG3623|consensus 41.7 11 0.00024 36.0 0.7 40 3-45 950-989 (1007)
75 KOG3623|consensus 41.6 9 0.00019 36.6 0.1 50 3-52 309-376 (1007)
76 PRK10328 DNA binding protein, 40.7 1.5E+02 0.0033 22.1 7.4 17 70-86 37-53 (134)
77 smart00614 ZnF_BED BED zinc fi 40.7 15 0.00033 22.2 1.0 22 4-25 19-45 (50)
78 PF08432 Vfa1: AAA-ATPase Vps4 40.3 47 0.001 25.5 3.9 18 8-26 38-55 (182)
79 KOG3993|consensus 40.1 12 0.00027 33.5 0.7 26 3-28 295-321 (500)
80 PHA03123 dUTPase; Provisional 38.5 16 0.00034 32.2 1.1 14 110-123 388-401 (402)
81 KOG2894|consensus 38.4 1.2E+02 0.0025 26.1 6.1 17 41-57 67-83 (331)
82 PF08262 Lem_TRP: Leucophaea m 38.1 13 0.00029 16.4 0.3 7 112-118 3-9 (10)
83 PF09986 DUF2225: Uncharacteri 36.9 10 0.00022 29.9 -0.3 22 3-24 5-26 (214)
84 PF04615 Utp14: Utp14 protein; 36.5 1.1E+02 0.0025 28.2 6.3 52 38-94 194-245 (735)
85 COG1645 Uncharacterized Zn-fin 35.7 16 0.00035 27.4 0.7 12 2-13 43-54 (131)
86 PHA02562 46 endonuclease subun 35.3 1.8E+02 0.0039 25.1 7.1 20 4-23 285-304 (562)
87 KOG1074|consensus 35.2 17 0.00036 35.1 0.8 21 3-23 879-899 (958)
88 PF13240 zinc_ribbon_2: zinc-r 34.8 14 0.00031 19.5 0.2 15 5-19 1-15 (23)
89 TIGR00570 cdk7 CDK-activating 34.6 2.9E+02 0.0063 23.5 8.3 16 2-17 42-57 (309)
90 PF06936 Selenoprotein_S: Sele 34.5 1.1E+02 0.0023 24.2 5.1 8 109-116 166-173 (190)
91 KOG3576|consensus 34.3 15 0.00032 30.3 0.2 20 4-23 174-193 (267)
92 PF00692 dUTPase: dUTPase; In 33.6 21 0.00045 25.2 0.9 12 110-121 117-128 (129)
93 PHA03127 dUTPase; Provisional 33.1 20 0.00044 30.6 0.9 12 110-121 309-320 (322)
94 KOG3634|consensus 33.0 65 0.0014 28.0 3.9 13 108-120 181-194 (361)
95 PTZ00373 60S Acidic ribosomal 32.8 26 0.00057 25.5 1.3 7 113-119 106-112 (112)
96 PF03879 Cgr1: Cgr1 family; I 32.1 1.4E+02 0.003 21.7 5.0 17 41-57 41-57 (108)
97 PF13119 DUF3973: Domain of un 31.5 13 0.00029 22.7 -0.3 8 4-11 2-9 (41)
98 PHA03126 dUTPase; Provisional 31.1 22 0.00049 30.4 0.9 12 110-121 313-324 (326)
99 COG5067 DBF4 Protein kinase es 30.7 13 0.00029 32.9 -0.5 30 5-37 424-453 (468)
100 PF13462 Thioredoxin_4: Thiore 30.1 10 0.00022 26.7 -1.2 21 3-23 21-41 (162)
101 KOG2462|consensus 29.9 26 0.00056 29.5 1.0 23 3-25 187-209 (279)
102 PRK10947 global DNA-binding tr 29.6 2.4E+02 0.0052 21.0 7.3 13 19-31 4-16 (135)
103 PF05766 NinG: Bacteriophage L 29.5 1.6E+02 0.0034 23.4 5.3 12 6-17 126-137 (189)
104 KOG2593|consensus 29.3 21 0.00046 31.7 0.4 54 2-55 127-184 (436)
105 COG4469 CoiA Competence protei 28.7 22 0.00047 30.7 0.4 10 3-12 25-34 (342)
106 PF05477 SURF2: Surfeit locus 28.6 30 0.00065 28.4 1.1 32 3-34 79-111 (244)
107 PF10825 DUF2752: Protein of u 28.4 21 0.00045 22.3 0.1 10 3-12 9-18 (52)
108 PHA03129 dUTPase; Provisional 27.9 28 0.0006 31.0 0.9 12 110-121 423-434 (436)
109 cd04411 Ribosomal_P1_P2_L12p R 27.4 38 0.00083 24.2 1.4 12 41-52 17-28 (105)
110 PF13842 Tnp_zf-ribbon_2: DDE_ 26.9 26 0.00057 19.8 0.4 11 3-13 16-26 (32)
111 cd00085 HNHc HNH nucleases; HN 26.4 19 0.0004 20.7 -0.3 24 4-27 12-35 (57)
112 smart00834 CxxC_CXXC_SSSS Puta 26.2 31 0.00068 19.4 0.7 15 3-17 5-19 (41)
113 TIGR03830 CxxCG_CxxCG_HTH puta 26.2 32 0.00068 23.8 0.8 17 2-18 30-46 (127)
114 KOG2186|consensus 25.9 29 0.00062 29.1 0.6 22 2-24 28-49 (276)
115 smart00400 ZnF_CHCC zinc finge 25.7 44 0.00094 20.5 1.3 26 2-28 22-47 (55)
116 PF07649 C1_3: C1-like domain; 25.2 26 0.00057 19.1 0.2 13 2-14 14-26 (30)
117 PHA03130 dUTPase; Provisional 25.2 33 0.00071 29.9 0.8 13 109-121 354-366 (368)
118 TIGR00606 rad50 rad50. This fa 24.7 1.9E+02 0.0042 28.5 6.0 21 5-25 679-702 (1311)
119 cd05833 Ribosomal_P2 Ribosomal 24.4 49 0.0011 23.8 1.5 7 113-119 103-109 (109)
120 PF01418 HTH_6: Helix-turn-hel 24.1 33 0.00071 22.4 0.5 12 108-119 53-64 (77)
121 PF15005 IZUMO: Izumo sperm-eg 23.8 3.2E+02 0.0069 21.0 6.0 81 2-82 2-108 (160)
122 PF00558 Vpu: Vpu protein; In 23.7 39 0.00084 23.5 0.8 8 110-117 69-76 (81)
123 PF01844 HNH: HNH endonuclease 23.6 19 0.00041 20.7 -0.7 23 6-28 1-24 (47)
124 COG5509 Uncharacterized small 23.6 1.5E+02 0.0032 19.8 3.5 25 64-88 28-52 (65)
125 PF04640 PLATZ: PLATZ transcri 23.5 30 0.00064 23.4 0.2 16 2-17 48-63 (72)
126 KOG2893|consensus 23.0 37 0.0008 28.7 0.7 44 4-47 11-66 (341)
127 KOG3608|consensus 22.6 27 0.0006 30.8 -0.1 20 5-24 209-228 (467)
128 KOG2635|consensus 22.5 1.3E+02 0.0028 27.3 4.0 11 41-51 125-135 (512)
129 KOG0801|consensus 22.3 37 0.00081 27.0 0.6 14 2-15 137-150 (205)
130 PF07043 DUF1328: Protein of u 21.8 48 0.001 20.0 0.9 11 109-119 9-19 (39)
131 KOG3576|consensus 21.8 33 0.00071 28.3 0.2 23 3-25 117-139 (267)
132 COG5487 Small integral membran 21.6 49 0.0011 21.3 0.9 12 108-119 13-24 (54)
133 COG5151 SSL1 RNA polymerase II 21.6 37 0.00079 29.6 0.4 30 1-30 306-346 (421)
134 PLN00138 large subunit ribosom 21.4 59 0.0013 23.6 1.4 8 112-119 106-113 (113)
135 PF09712 PHA_synth_III_E: Poly 21.1 1.1E+02 0.0023 25.4 3.1 21 17-37 226-246 (293)
136 KOG1029|consensus 21.1 2.8E+02 0.0062 27.2 6.1 8 63-70 370-377 (1118)
137 KOG3792|consensus 21.0 38 0.00082 32.2 0.4 29 4-32 194-222 (816)
138 PF12760 Zn_Tnp_IS1595: Transp 21.0 48 0.001 19.8 0.8 11 2-12 17-27 (46)
139 PF03992 ABM: Antibiotic biosy 20.7 87 0.0019 19.0 2.0 18 13-30 57-74 (78)
140 smart00531 TFIIE Transcription 20.7 44 0.00096 24.6 0.7 16 2-17 98-113 (147)
141 KOG2807|consensus 20.7 40 0.00086 29.4 0.5 10 1-10 274-283 (378)
142 KOG1280|consensus 20.6 48 0.001 29.0 1.0 24 3-26 79-102 (381)
143 PF04504 DUF573: Protein of un 20.6 1E+02 0.0022 21.5 2.5 17 41-57 49-65 (98)
144 KOG2963|consensus 20.6 5.4E+02 0.012 22.8 7.3 10 41-50 316-325 (405)
145 PF10186 Atg14: UV radiation r 20.4 3.9E+02 0.0085 20.7 6.1 10 3-12 11-20 (302)
No 1
>KOG4727|consensus
Probab=100.00 E-value=1.2e-45 Score=284.87 Aligned_cols=121 Identities=69% Similarity=1.122 Sum_probs=111.0
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHH
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSSLDQVKKRFDMNKKKYEQKKKDYDIEQRMRELKEEEEKL 80 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~ver~tle~V~~rl~~lk~k~~~~~~~~~~~eRl~~~~eeEek~ 80 (124)
++||||.||||+|+||++|||||||+.|++|+||||+|+|+||+||+.||+.++.+.+.....+++++||.+.+++|++.
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm~verst~~qv~erf~~~k~k~~~~~ke~~vE~r~~e~qeee~rl 152 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKERFEQNKKKMEEKQKEYDVEERLRETQEEEERL 152 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCccccCChHHHHHHhCCCCCCCCCC
Q psy7022 81 KEYRRERRKEKKRKLDDGEEEEEGDQSDLAAIMGFSGFGGGKK 123 (124)
Q Consensus 81 re~rr~kkkekk~~~~~~~~~~~~~~~emaamMGF~gFGssKK 123 (124)
+..+++|++++|+...+..+.+ ..|||+|||||||||+|||
T Consensus 153 kd~~kEK~ke~K~~t~~di~~e--s~~~~~amMGFSgF~tsKk 193 (193)
T KOG4727|consen 153 KDTRKEKKKEKKRATKEDIDFE--SKDEMAAMMGFSGFGTSKK 193 (193)
T ss_pred HHHHHHHHHHHhhccccccccc--ccHHHHHHhCccccccCCC
Confidence 9999999988887765432222 2489999999999999997
No 2
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=99.03 E-value=1.3e-10 Score=66.48 Aligned_cols=33 Identities=36% Similarity=0.874 Sum_probs=30.4
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHHhc
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRNLG 33 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G 33 (124)
.++|||++|+++|.++.+|..|++|++|..++.
T Consensus 1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~ 33 (35)
T smart00451 1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33 (35)
T ss_pred CcCeEccccCCccCCHHHHHHHHChHHHHHHHH
Confidence 478999999999999999999999999998754
No 3
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.87 E-value=1.1e-09 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.755 Sum_probs=25.2
Q ss_pred CccccccCceecchhhHhhhhccHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQ 29 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~ 29 (124)
-|||++||++|.+..+|..|++|+.|.
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence 389999999999999999999999994
No 4
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.70 E-value=7.9e-09 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.816 Sum_probs=24.5
Q ss_pred ccccccCceecchhhHhhhhccHHH
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKKH 28 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~H 28 (124)
|||.+|+++|.+..+|..|++|+.|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 8999999999999999999999998
No 5
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=98.40 E-value=1.2e-07 Score=72.07 Aligned_cols=18 Identities=39% Similarity=0.874 Sum_probs=15.9
Q ss_pred hHHHHHHhCCCCCCCCCC
Q psy7022 106 QSDLAAIMGFSGFGGGKK 123 (124)
Q Consensus 106 ~~emaamMGF~gFGssKK 123 (124)
+.+||+||||+||||||-
T Consensus 126 e~~mmk~MGf~gF~TTKg 143 (180)
T PF08648_consen 126 EEEMMKMMGFGGFGTTKG 143 (180)
T ss_pred HHHHHHhhcccccccCCC
Confidence 457999999999999985
No 6
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=98.28 E-value=4e-07 Score=54.65 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=18.2
Q ss_pred CCCccccccCcee-cch-hhHhhhhccHHHHHHh
Q psy7022 1 MLGYYCNVCDCVV-KDS-INFLDHINGKKHQRNL 32 (124)
Q Consensus 1 ~~gfyC~vCd~~f-kDs-~~~ldHlngk~H~~~~ 32 (124)
++.|||+.|+++| .|+ ++...|.+|.+|+.|.
T Consensus 1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv 34 (38)
T PF06220_consen 1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENV 34 (38)
T ss_dssp --S-B-TTT--B-S--SHHHHHHHT--THHHHHH
T ss_pred CcCeecccccceecCCChHHHHHhhccHHHHHHH
Confidence 4689999999999 677 4669999999999875
No 7
>KOG0717|consensus
Probab=97.87 E-value=5.4e-06 Score=72.87 Aligned_cols=28 Identities=39% Similarity=0.723 Sum_probs=26.9
Q ss_pred ccccccCceecchhhHhhhhccHHHHHH
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKKHQRN 31 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~H~~~ 31 (124)
+||.||+++|++-.++.+|.||++|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHken 320 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKEN 320 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHH
Confidence 8999999999999999999999999874
No 8
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=97.52 E-value=5.5e-05 Score=65.17 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=28.5
Q ss_pred CCccccccCceecchhhHhhhhccHHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQRN 31 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~~ 31 (124)
.+|||++|++||+.|.+|..|+-|+.|.++
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~ 266 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKE 266 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhh
Confidence 589999999999999999999999999884
No 9
>KOG3454|consensus
Probab=97.22 E-value=0.00015 Score=56.20 Aligned_cols=32 Identities=41% Similarity=0.834 Sum_probs=27.3
Q ss_pred CCCccccccC-ceecchh-hHhhhhccHHHHHHh
Q psy7022 1 MLGYYCNVCD-CVVKDSI-NFLDHINGKKHQRNL 32 (124)
Q Consensus 1 ~~gfyC~vCd-~~fkDs~-~~ldHlngk~H~~~~ 32 (124)
+..|||+.|| ..+.||+ +-..|++|.+|+.|.
T Consensus 1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nv 34 (165)
T KOG3454|consen 1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNV 34 (165)
T ss_pred CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHH
Confidence 3579999999 6778887 889999999999853
No 10
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.06 E-value=0.00027 Score=36.73 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=20.4
Q ss_pred ccccccCceecchhhHhhhhcc
Q psy7022 4 YYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlng 25 (124)
|-|+.|++.|.+...|..|+..
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 6799999999999999999975
No 11
>KOG3408|consensus
Probab=96.95 E-value=0.00032 Score=52.29 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=27.7
Q ss_pred CCccccccCceecchhhHhhhhccHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQR 30 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~ 30 (124)
|-|||..|.+.|-|+.++..|..++.|.+
T Consensus 56 GqfyCi~CaRyFi~~~~l~~H~ktK~HKr 84 (129)
T KOG3408|consen 56 GQFYCIECARYFIDAKALKTHFKTKVHKR 84 (129)
T ss_pred ceeehhhhhhhhcchHHHHHHHhccHHHH
Confidence 57999999999999999999999999987
No 12
>KOG3263|consensus
Probab=96.71 E-value=0.00068 Score=53.35 Aligned_cols=18 Identities=44% Similarity=0.778 Sum_probs=15.8
Q ss_pred hHHHHHHhCCCCCCCCCC
Q psy7022 106 QSDLAAIMGFSGFGGGKK 123 (124)
Q Consensus 106 ~~emaamMGF~gFGssKK 123 (124)
..||++||||+||-|||-
T Consensus 143 eiEMmk~MGf~gFDtTkg 160 (196)
T KOG3263|consen 143 EIEMMKIMGFSGFDTTKG 160 (196)
T ss_pred HHHHHHHhCcCcccCCCC
Confidence 457999999999999974
No 13
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=96.69 E-value=0.0013 Score=41.58 Aligned_cols=43 Identities=23% Similarity=0.453 Sum_probs=31.8
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhccccccccccHHHHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSSLDQVKKRF 50 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~ver~tle~V~~rl 50 (124)
.-||+.|...|.| |..||.|++|..=...+.+. ..||.+-.+|
T Consensus 5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA~~~~Nf--~~lD~li~~l 47 (49)
T PF07535_consen 5 PGYCENCRVKYDD---LEEHIQSEKHRKFAENDSNF--KELDSLISQL 47 (49)
T ss_pred CccCccccchhhh---HHHHhCCHHHHHHHcCcccH--HHHHHHHHHh
Confidence 5699999999986 99999999999865555553 3455554443
No 14
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.55 E-value=0.0013 Score=35.31 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=20.3
Q ss_pred ccccccCceecchhhHhhhhcc
Q psy7022 4 YYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlng 25 (124)
|.|.+|+.+|.+..+|..|+..
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCccCCccCChhHHHHHhHH
Confidence 7899999999999999999953
No 15
>KOG2837|consensus
Probab=96.50 E-value=0.00072 Score=56.41 Aligned_cols=54 Identities=26% Similarity=0.432 Sum_probs=38.5
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhccccc-----cccccHHHHHHHHHHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMR-----VERSSLDQVKKRFDMNKKK 56 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~-----ver~tle~V~~rl~~lk~k 56 (124)
.|||..|-+.|+|-+.|..|+.|..|++.+-.-.- +++-|-+=.+.-|+.|++.
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~Np~~~~~~fs~eF~~dFl~LLr~~ 83 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFALNPGRSLERFSNEFEKDFLSLLRQR 83 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHhCcchhHHHhHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999997644322 2233333344445555554
No 16
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.36 E-value=0.0021 Score=32.63 Aligned_cols=21 Identities=14% Similarity=0.586 Sum_probs=17.7
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
|-|++|+.+|.+...|..|+.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHH
Confidence 679999999999999999985
No 17
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.27 E-value=0.0015 Score=43.34 Aligned_cols=29 Identities=17% Similarity=0.584 Sum_probs=25.5
Q ss_pred CccccccCceecchhhHhhhhccHHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRN 31 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~ 31 (124)
.|.|.+|+..|.+..++..||+++.|...
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~ 78 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKR 78 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence 58999999999999999999999999873
No 18
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=95.88 E-value=0.0025 Score=46.93 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=27.9
Q ss_pred CCccccccCceecchhhHhhhhccHHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQRN 31 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~~ 31 (124)
|-|||..|++.|-.+.++..|..|+-|.+.
T Consensus 54 GqhYCieCaryf~t~~aL~~HkkgkvHkRR 83 (126)
T COG5112 54 GQHYCIECARYFITEKALMEHKKGKVHKRR 83 (126)
T ss_pred ceeeeehhHHHHHHHHHHHHHhccchhHHH
Confidence 569999999999999999999999999873
No 19
>PHA02768 hypothetical protein; Provisional
Probab=95.78 E-value=0.0044 Score=40.16 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=22.4
Q ss_pred CCccccccCceecchhhHhhhhcc
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlng 25 (124)
-||.|+.|++.|..+++|..|...
T Consensus 4 ~~y~C~~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 4 LGYECPICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cccCcchhCCeeccHHHHHHHHHh
Confidence 389999999999999999999976
No 20
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=95.60 E-value=0.02 Score=46.61 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=31.2
Q ss_pred ccccccC--ceecchh-hHhhhhccHHHHHHhccccccccccHHHHHHHHHHHHHHH
Q psy7022 4 YYCNVCD--CVVKDSI-NFLDHINGKKHQRNLGMSMRVERSSLDQVKKRFDMNKKKY 57 (124)
Q Consensus 4 fyC~vCd--~~fkDs~-~~ldHlngk~H~~~~G~s~~ver~tle~V~~rl~~lk~k~ 57 (124)
-.|+||+ ++..|+. =+.||+.||+|+- .-.||..|+.|+++.
T Consensus 191 ~VCeVCGA~Ls~~D~d~RladH~~GK~HlG------------y~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 191 EVCEVCGAFLSVGDNDRRLADHFGGKQHLG------------YAKIREKLKELKEKR 235 (254)
T ss_pred cchhhhhhHHhccchHHHHHHHhccchhhh------------HHHHHHHHHHHHHHH
Confidence 4699999 5556666 4899999999975 445677777776654
No 21
>KOG2384|consensus
Probab=95.51 E-value=0.0038 Score=50.20 Aligned_cols=30 Identities=30% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCccccccCceecchhhHhhhhccHHHHHHh
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~ 32 (124)
.+|||++||..|.++ .+..|+.|--|+.++
T Consensus 83 ~lfyCE~Cd~~ip~~-~~snH~tSttHllsl 112 (223)
T KOG2384|consen 83 ALFYCEVCDIYIPNS-KKSNHFTSTTHLLSL 112 (223)
T ss_pred ccchhhhhhhhccCC-CCccchhhHHHHhhh
Confidence 589999999999985 456788887777654
No 22
>PLN02748 tRNA dimethylallyltransferase
Probab=95.42 E-value=0.0088 Score=52.64 Aligned_cols=30 Identities=23% Similarity=0.696 Sum_probs=27.2
Q ss_pred CccccccCc-eecchhhHhhhhccHHHHHHh
Q psy7022 3 GYYCNVCDC-VVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 3 gfyC~vCd~-~fkDs~~~ldHlngk~H~~~~ 32 (124)
-|+|++|+. ++....+|.-||+|+.|.+++
T Consensus 418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~ 448 (468)
T PLN02748 418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRV 448 (468)
T ss_pred cccccCCCCcccCCHHHHHHHhcchHHHHHH
Confidence 478999997 999999999999999998843
No 23
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.26 E-value=0.0097 Score=30.19 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.6
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
|-|+.|+.+|.+...+..|+.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 579999999999999999986
No 24
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=95.07 E-value=0.011 Score=37.47 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCccccccCceecchhhHhhhhccHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQR 30 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~ 30 (124)
..-||+.|..-|. .|..||.|++|..
T Consensus 4 k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~ 29 (49)
T smart00586 4 KPGYCENCREKYD---DLETHLLSEKHRR 29 (49)
T ss_pred CCcccccHhHHHh---hHHHHhccHHHHH
Confidence 3569999999998 5888999999987
No 25
>KOG3032|consensus
Probab=94.67 E-value=0.02 Score=47.00 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.6
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHH
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRN 31 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~ 31 (124)
+|...|.||+.-.| .+.|.-|+||++|.-+
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~ 62 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREA 62 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHH
Confidence 45678999999999 9999999999999654
No 26
>KOG2785|consensus
Probab=94.41 E-value=0.013 Score=50.72 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=28.9
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhcc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLGM 34 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~ 34 (124)
-+||.||.+.|..+.++.+||+|+.|..++-.
T Consensus 68 ~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~ 99 (390)
T KOG2785|consen 68 VVYCEACNKSFASPKAHENHLKSKKHVENLSN 99 (390)
T ss_pred ceehHHhhccccChhhHHHHHHHhhcchhhhh
Confidence 48999999999999999999999999876544
No 27
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=93.97 E-value=0.016 Score=38.29 Aligned_cols=29 Identities=28% Similarity=0.639 Sum_probs=23.9
Q ss_pred ccccccCceecchhhHhhhhccHHHHHHhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKKHQRNLG 33 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~H~~~~G 33 (124)
|-|+-||..|+++-.|..|+| +.|....|
T Consensus 18 lrCPRC~~~FR~~K~Y~RHVN-KaH~~~~~ 46 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIRHVN-KAHGWLFG 46 (65)
T ss_pred eeCCchhHHHHHhHHHHHHhh-HHhhhhhc
Confidence 579999999999999999998 45555443
No 28
>KOG0150|consensus
Probab=93.82 E-value=0.028 Score=47.65 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=25.2
Q ss_pred CCccccccCceecchhh-HhhhhccHHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSIN-FLDHINGKKHQRN 31 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~-~ldHlngk~H~~~ 31 (124)
+.+||.+|-|||.|+-. -..|=-|+.|..+
T Consensus 9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~ 39 (336)
T KOG0150|consen 9 PKKFCDYCKIWIKDNPASVRFHERGKRHKEN 39 (336)
T ss_pred cchhhhhhhhhhcCChHHHHhHhhhhHHHHH
Confidence 57899999999999984 4556699999874
No 29
>PHA00616 hypothetical protein
Probab=91.90 E-value=0.048 Score=33.87 Aligned_cols=22 Identities=18% Similarity=0.596 Sum_probs=20.3
Q ss_pred ccccccCceecchhhHhhhhcc
Q psy7022 4 YYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlng 25 (124)
|-|+-|+..|.....+..|++.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 7799999999999999999953
No 30
>KOG0227|consensus
Probab=90.50 E-value=0.12 Score=41.58 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=28.9
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHHh
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~ 32 (124)
.|.|-|..|.-.--+-.+|+.|..|++|+-|+
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nl 82 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNL 82 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHH
Confidence 36799999999999999999999999998865
No 31
>PF14968 CCDC84: Coiled coil protein 84
Probab=90.23 E-value=0.45 Score=40.62 Aligned_cols=30 Identities=27% Similarity=0.848 Sum_probs=27.3
Q ss_pred CccccccCceecch------hhHhhhhccHHHHHHh
Q psy7022 3 GYYCNVCDCVVKDS------INFLDHINGKKHQRNL 32 (124)
Q Consensus 3 gfyC~vCd~~fkDs------~~~ldHlngk~H~~~~ 32 (124)
.|+|..||+-..+. ...|.||.|+.|++++
T Consensus 58 ~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~v 93 (336)
T PF14968_consen 58 RFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNV 93 (336)
T ss_pred eeEeeCccchhhhccchhhhccHHhhcCCHHHHHHH
Confidence 68999999999988 6899999999999875
No 32
>KOG0796|consensus
Probab=90.03 E-value=0.3 Score=41.53 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=29.6
Q ss_pred cccccCcee--cchh-hHhhhhccHHHHHHhccccccccccHHHHHHHHHHHHHHH
Q psy7022 5 YCNVCDCVV--KDSI-NFLDHINGKKHQRNLGMSMRVERSSLDQVKKRFDMNKKKY 57 (124)
Q Consensus 5 yC~vCd~~f--kDs~-~~ldHlngk~H~~~~G~s~~ver~tle~V~~rl~~lk~k~ 57 (124)
.|+||+..+ .|+. =+.||+|||.|+- --.|++.|..|+...
T Consensus 188 VCeVCGa~L~~~D~d~RlaDHf~GKlHlG------------y~~iR~~l~eLk~~~ 231 (319)
T KOG0796|consen 188 VCEVCGAFLSVNDADRRLADHFGGKLHLG------------YVLIREKLAELKKEK 231 (319)
T ss_pred HHHhhhHHHhccchHHHHHHhhcchHHHH------------HHHHHHHHHHHHHHH
Confidence 599999755 3443 5789999999976 345577777776654
No 33
>KOG2785|consensus
Probab=89.99 E-value=0.45 Score=41.37 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=48.8
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHHhc-cccccccccHHHHHHHHHHHHHHHH
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRNLG-MSMRVERSSLDQVKKRFDMNKKKYE 58 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G-~s~~ver~tle~V~~rl~~lk~k~~ 58 (124)
|+||-|..|...|.++-.--.|-.+-.|..|+- ..-.+.-.|+++.-+++......++
T Consensus 1 st~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~ 59 (390)
T KOG2785|consen 1 STGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKE 59 (390)
T ss_pred CCcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhh
Confidence 689999999999999999999999999988763 3445667899999999887766553
No 34
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=89.70 E-value=0.1 Score=40.95 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=25.5
Q ss_pred CCCccccccCceecc-hh-hHhhhhccHHHHHH
Q psy7022 1 MLGYYCNVCDCVVKD-SI-NFLDHINGKKHQRN 31 (124)
Q Consensus 1 ~~gfyC~vCd~~fkD-s~-~~ldHlngk~H~~~ 31 (124)
++.|||+.|..|+.. ++ +-..|+-|+.|.++
T Consensus 1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~ 33 (188)
T COG5136 1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLM 33 (188)
T ss_pred CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHH
Confidence 468999999999853 33 77899999999984
No 35
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=88.63 E-value=0.23 Score=39.81 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=29.1
Q ss_pred CCCccccccCceecchhhHhhhhccHHHHHHh
Q psy7022 1 MLGYYCNVCDCVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 1 ~~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~ 32 (124)
+|.|.|..|.-.--+-++|+.|+.|++|.-|+
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~ 82 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENS 82 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhH
Confidence 46799999999999999999999999998764
No 36
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=88.50 E-value=0.14 Score=40.77 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=0.0
Q ss_pred CccccccC-ceecchhhHhhhhccHHHH---HHhccc
Q psy7022 3 GYYCNVCD-CVVKDSINFLDHINGKKHQ---RNLGMS 35 (124)
Q Consensus 3 gfyC~vCd-~~fkDs~~~ldHlngk~H~---~~~G~s 35 (124)
-|+|+||+ .+|+---+|..|++...|+ +.+|++
T Consensus 101 ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~ 137 (196)
T PF11931_consen 101 EYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIP 137 (196)
T ss_dssp -------------------------------------
T ss_pred eeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCC
Confidence 59999996 6789999999999999995 456766
No 37
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=88.16 E-value=0.32 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.3
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
.-|+.|+++| ....+..|+.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHH
Confidence 3599999999 6778888864
No 38
>PTZ00448 hypothetical protein; Provisional
Probab=86.73 E-value=0.43 Score=41.33 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.4
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLG 33 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G 33 (124)
-|-|..|+..|.|+..+-+|.-|-.|..|+-
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLK 344 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTK 344 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHH
Confidence 5789999999999999999999999988763
No 39
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=85.54 E-value=0.47 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.3
Q ss_pred cccccCceecchhhHhhhhc
Q psy7022 5 YCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ldHln 24 (124)
-|++|+..+ ......+||.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 599999999 6678889986
No 40
>PF06658 DUF1168: Protein of unknown function (DUF1168); InterPro: IPR009548 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=83.53 E-value=5.2 Score=30.36 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7022 48 KRFDMNKKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKK 92 (124)
Q Consensus 48 ~rl~~lk~k~~~~~~~~~~~eRl~~~~eeEek~re~rr~kkkekk 92 (124)
.||..+-...........|..++......++..-+.+++||..+|
T Consensus 50 ~Rl~~me~~~~~e~~~~eF~~kree~~~~~eekTaKkR~KR~KkK 94 (142)
T PF06658_consen 50 ERLEYMEEEAKKEKEDEEFQRKREERKKEAEEKTAKKRAKRQKKK 94 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444434445667888888877777777777766665443
No 41
>PF14968 CCDC84: Coiled coil protein 84
Probab=82.78 E-value=0.48 Score=40.46 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.0
Q ss_pred cccccCceecchhhHhhhhccHHHHHHhcc
Q psy7022 5 YCNVCDCVVKDSINFLDHINGKKHQRNLGM 34 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ldHlngk~H~~~~G~ 34 (124)
||.||.+..-- ...|+-++.|++++-.
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~ 27 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSA 27 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHH
Confidence 99999987654 9999999999987653
No 42
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=82.74 E-value=0.67 Score=28.79 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=19.1
Q ss_pred CccccccCceecchhhHhhhhccH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGK 26 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk 26 (124)
.|-|++|++ .-|...|..|+...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDE 24 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhH
Confidence 588999999 66778999999743
No 43
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=82.70 E-value=1.9 Score=34.67 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=19.8
Q ss_pred CccccccCceecchhhHhhhhccHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKK 27 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~ 27 (124)
.|-|.+|.+.|+-..=+.-||..|.
T Consensus 77 K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 77 KWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp EEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred EECCCCCCcccCChHHHHHHHhhcC
Confidence 5889999999999999999997553
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=81.13 E-value=1.1 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=15.6
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
|-|+.|+-+.. ...+..|+.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHH
Confidence 67999998888 889999985
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=80.42 E-value=1 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=15.8
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
--|++|+.++..+-++-.|+-
T Consensus 25 atCP~C~a~~~~srnLrRHle 45 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLE 45 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHH
T ss_pred CCCCcchhhccchhhHHHHHH
Confidence 359999999999999999983
No 46
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=79.96 E-value=0.79 Score=24.65 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=10.8
Q ss_pred CccccccCceec
Q psy7022 3 GYYCNVCDCVVK 14 (124)
Q Consensus 3 gfyC~vCd~~fk 14 (124)
.|-|++|++.|.
T Consensus 14 ~~~C~~C~k~F~ 25 (26)
T PF13465_consen 14 PYKCPYCGKSFS 25 (26)
T ss_dssp SEEESSSSEEES
T ss_pred CCCCCCCcCeeC
Confidence 589999999996
No 47
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=79.24 E-value=0.61 Score=30.57 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=0.0
Q ss_pred ccccCceecchhhHhhhhccHHHHH
Q psy7022 6 CNVCDCVVKDSINFLDHINGKKHQR 30 (124)
Q Consensus 6 C~vCd~~fkDs~~~ldHlngk~H~~ 30 (124)
|.+|+.+|.+...++.|++ ..|..
T Consensus 2 C~~C~~~f~~~~~l~~H~~-~~H~~ 25 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMK-KKHGF 25 (100)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccc-ccccc
Confidence 9999999999999999995 44544
No 48
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=79.02 E-value=0.7 Score=35.99 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=32.9
Q ss_pred ccccccCceecchh-hHhhhhccHHHHHHhcc-ccccccccHHHHHHHH
Q psy7022 4 YYCNVCDCVVKDSI-NFLDHINGKKHQRNLGM-SMRVERSSLDQVKKRF 50 (124)
Q Consensus 4 fyC~vCd~~fkDs~-~~ldHlngk~H~~~~G~-s~~ver~tle~V~~rl 50 (124)
++|.+||...-.+. ....||.|..|++|.-. --..+|.+|.=-+.-|
T Consensus 92 ~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~sl~vA~Sil 140 (165)
T PF04988_consen 92 AHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMMEQSKRSSLSVARSIL 140 (165)
T ss_pred hhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 58999999998876 77899999999997533 3334444444333333
No 49
>KOG3792|consensus
Probab=74.01 E-value=1 Score=42.17 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=27.7
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLG 33 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G 33 (124)
.|.|.+|||.|.|-++-+-|||+..|-...-
T Consensus 359 ~f~cKlcdckf~d~nak~mhl~grRhrLQYk 389 (816)
T KOG3792|consen 359 RFHCKLCDCKFNDPNAKEMHLKGRRHRLQYK 389 (816)
T ss_pred hhhhhhhcCCCCCcchHHhhhhcccccceec
Confidence 5899999999999999999999999965443
No 50
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=73.71 E-value=0.89 Score=27.97 Aligned_cols=16 Identities=38% Similarity=0.791 Sum_probs=12.4
Q ss_pred ccccccCcee---cchhhH
Q psy7022 4 YYCNVCDCVV---KDSINF 19 (124)
Q Consensus 4 fyC~vCd~~f---kDs~~~ 19 (124)
-||.+||+.+ .++..|
T Consensus 7 ~yC~~Cdk~~~~~~~~~lY 25 (43)
T PF12855_consen 7 DYCIVCDKQIDPPDDGSLY 25 (43)
T ss_pred hHHHHhhccccCCCCCccc
Confidence 4999999999 555544
No 51
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=72.98 E-value=1.9 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.5
Q ss_pred CccccccCceecchhhHhhhhccH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGK 26 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk 26 (124)
=+||-.|+..|.|...+..|..|.
T Consensus 27 ~~YC~~Cg~~Y~d~~dL~~~CPG~ 50 (55)
T PF13821_consen 27 HNYCFWCGTKYDDEEDLERNCPGP 50 (55)
T ss_pred CceeeeeCCccCCHHHHHhCCCCC
Confidence 379999999999999999998775
No 52
>PHA00732 hypothetical protein
Probab=72.72 E-value=2.1 Score=29.11 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=19.4
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
|-|+.|+..|.+..++..|+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r 22 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHAR 22 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhh
Confidence 679999999999999999985
No 53
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=65.95 E-value=3 Score=25.88 Aligned_cols=13 Identities=15% Similarity=0.578 Sum_probs=7.7
Q ss_pred cccccCceecchh
Q psy7022 5 YCNVCDCVVKDSI 17 (124)
Q Consensus 5 yC~vCd~~fkDs~ 17 (124)
-||||+..|.+..
T Consensus 22 ~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 22 CCPLCGRPLDEEH 34 (54)
T ss_dssp E-TTT--EE-HHH
T ss_pred cCCCCCCCCCHHH
Confidence 6999999998776
No 54
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=65.62 E-value=32 Score=24.19 Aligned_cols=48 Identities=33% Similarity=0.446 Sum_probs=36.6
Q ss_pred ccccHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHH
Q psy7022 39 ERSSLDQVKKRFDMNKKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRE 86 (124)
Q Consensus 39 er~tle~V~~rl~~lk~k~~~~~~~~~~~eRl~~~~eeEek~re~rr~ 86 (124)
...+..+-+.||..-+.+......+..|++|-.+.++..+++-++|+.
T Consensus 32 ~kl~~kEekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrK 79 (86)
T PF15437_consen 32 PKLSPKEEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRK 79 (86)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888899887777655566778999988888888777776653
No 55
>KOG2482|consensus
Probab=65.34 E-value=2 Score=37.44 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=26.0
Q ss_pred CccccccCceecchhhHhhhhccHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQR 30 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~ 30 (124)
.+-|-.|.+.|+|-..+.+|.+-+.|.+
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccCcc
Confidence 4679999999999999999999999976
No 56
>KOG2636|consensus
Probab=65.27 E-value=5.7 Score=35.61 Aligned_cols=33 Identities=33% Similarity=0.681 Sum_probs=28.4
Q ss_pred CccccccC-ceecchhhHhhhhccHHHHHH---hccc
Q psy7022 3 GYYCNVCD-CVVKDSINFLDHINGKKHQRN---LGMS 35 (124)
Q Consensus 3 gfyC~vCd-~~fkDs~~~ldHlngk~H~~~---~G~s 35 (124)
-|-|++|+ .+|+---+|..|+|.-.|+.- +|++
T Consensus 401 ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCLGIp 437 (497)
T KOG2636|consen 401 EYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCLGIP 437 (497)
T ss_pred ccceeeccCccccCcHHHHHHhHHHHHhhcceecCCC
Confidence 48899999 999999999999999999763 4554
No 57
>PHA00733 hypothetical protein
Probab=64.24 E-value=3.8 Score=29.98 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.1
Q ss_pred CccccccCceecchhhHhhhhc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHln 24 (124)
.|-|+.|++.|.+...+..|+.
T Consensus 73 Py~C~~Cgk~Fss~s~L~~H~r 94 (128)
T PHA00733 73 PYVCPLCLMPFSSSVSLKQHIR 94 (128)
T ss_pred CccCCCCCCcCCCHHHHHHHHh
Confidence 5889999999999999998885
No 58
>KOG2636|consensus
Probab=63.93 E-value=11 Score=33.76 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCccccccCceecchhhHhhhhccHHHHHHh
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H~~~~ 32 (124)
+|-+|+-|+++|..+...+.||-++-|.+|-
T Consensus 270 gGt~~~ra~rlf~Tk~~~l~~L~~~~~~kn~ 300 (497)
T KOG2636|consen 270 GGTLHERAQRLFSTKSKSLSHLDTKLFAKNP 300 (497)
T ss_pred CCeecHHHHhhhhhcCcchhhhhhhhhccCc
Confidence 5788999999999999999999988887753
No 59
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=60.69 E-value=5.9 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=19.7
Q ss_pred ccccccCceecchhhHhhhhc
Q psy7022 4 YYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHln 24 (124)
|-|++|+..|.|...|..|+-
T Consensus 58 WiCp~CskkF~d~~~~~~H~~ 78 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHME 78 (466)
T ss_pred eeCCcccceeCCHHHHHHHHH
Confidence 679999999999999999994
No 60
>KOG2462|consensus
Probab=59.48 E-value=4.3 Score=34.02 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.9
Q ss_pred CccccccCceecchhhHhhhhccHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQ 29 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~ 29 (124)
-|-|+.|++.|-|-+++-.|+....+.
T Consensus 215 PF~C~hC~kAFADRSNLRAHmQTHS~~ 241 (279)
T KOG2462|consen 215 PFSCPHCGKAFADRSNLRAHMQTHSDV 241 (279)
T ss_pred CccCCcccchhcchHHHHHHHHhhcCC
Confidence 589999999999999999998655443
No 61
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=59.40 E-value=4.4 Score=22.92 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.0
Q ss_pred ccccccCceecchhhHhhhh
Q psy7022 4 YYCNVCDCVVKDSINFLDHI 23 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHl 23 (124)
|-|.-|...| +...|..|.
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 5699999999 778888885
No 62
>KOG1144|consensus
Probab=58.80 E-value=37 Score=32.88 Aligned_cols=15 Identities=0% Similarity=0.153 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7022 43 LDQVKKRFDMNKKKY 57 (124)
Q Consensus 43 le~V~~rl~~lk~k~ 57 (124)
|-.++..|+.+++..
T Consensus 216 v~~~qe~La~~qe~e 230 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEE 230 (1064)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566666555544
No 63
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=56.92 E-value=6.8 Score=22.87 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=13.9
Q ss_pred CccccccCceecch----hhHhhhh
Q psy7022 3 GYYCNVCDCVVKDS----INFLDHI 23 (124)
Q Consensus 3 gfyC~vCd~~fkDs----~~~ldHl 23 (124)
...|..|+..++-+ +.+..||
T Consensus 16 ~a~C~~C~~~~~~~~~~ts~l~~HL 40 (45)
T PF02892_consen 16 KAKCKYCGKVIKYSSGGTSNLKRHL 40 (45)
T ss_dssp -EEETTTTEE-----SSTHHHHHHH
T ss_pred eEEeCCCCeEEeeCCCcHHHHHHhh
Confidence 45799999999985 5888888
No 64
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=56.25 E-value=14 Score=32.58 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.8
Q ss_pred CccccccC-ceecchhhHhhhhccHHHHHHh
Q psy7022 3 GYYCNVCD-CVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 3 gfyC~vCd-~~fkDs~~~ldHlngk~H~~~~ 32 (124)
-|-|++|+ .++----.|..|.|...|+.-+
T Consensus 374 ef~CEICgNyvy~GR~~FdrHF~E~rHiygl 404 (470)
T COG5188 374 EFECEICGNYVYYGRDRFDRHFEEDRHIYGL 404 (470)
T ss_pred ceeeeecccccccchHHHHhhhhhhhhhhhe
Confidence 48899999 8999999999999999998754
No 65
>KOG2505|consensus
Probab=55.78 E-value=7.7 Score=35.35 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=32.6
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhccccc-cccccHHHHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMR-VERSSLDQVKKRF 50 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~-ver~tle~V~~rl 50 (124)
.+.|.+|++.|.+-.....|+.+-.|.-|+-...+ ..=.|.+++-.-+
T Consensus 66 ~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~~~~ils~edFe~i~ 114 (591)
T KOG2505|consen 66 SDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLRGKPILSEEDFEGII 114 (591)
T ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhh
Confidence 57899999999999999999988888776544322 1114555554333
No 66
>PF14616 DUF4451: Domain of unknown function (DUF4451)
Probab=55.35 E-value=5.9 Score=28.96 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=17.6
Q ss_pred cccccC--ceec-chhhHhhhhccH
Q psy7022 5 YCNVCD--CVVK-DSINFLDHINGK 26 (124)
Q Consensus 5 yC~vCd--~~fk-Ds~~~ldHlngk 26 (124)
+|++|. .||. -+++|..||+-.
T Consensus 27 lCp~C~~~~wl~lKnSsY~~Hl~~~ 51 (124)
T PF14616_consen 27 LCPYCPGGNWLKLKNSSYWYHLQFA 51 (124)
T ss_pred ECCCCCCCcEeeecccchhhhhhhc
Confidence 799999 8886 477899999643
No 67
>KOG4722|consensus
Probab=55.32 E-value=4.4 Score=36.52 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=34.7
Q ss_pred cccccCceecchhhHhhhhccHHHHHHhccc----------cccccccHHHHHHHHH
Q psy7022 5 YCNVCDCVVKDSINFLDHINGKKHQRNLGMS----------MRVERSSLDQVKKRFD 51 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ldHlngk~H~~~~G~s----------~~ver~tle~V~~rl~ 51 (124)
.|.+|+....+..-+..|+.|++|++++... ..|+-++|+-+--++.
T Consensus 495 qcslcnvlissevylfshvkgrkhqqal~e~~~iegrel~deevehlSle~~~idi~ 551 (672)
T KOG4722|consen 495 QCSLCNVLISSEVYLFSHVKGRKHQQALNELLLIEGRELEDEEVEHLSLEHLAIDIC 551 (672)
T ss_pred ccchhhhhhhhhhhhhhhhcchhHHHHHHHHhccCcccCCccccccccHHhhhhHHH
Confidence 5999999999999999999999999876432 2355566655444433
No 68
>KOG1842|consensus
Probab=52.91 E-value=5.2 Score=35.84 Aligned_cols=22 Identities=23% Similarity=0.643 Sum_probs=19.5
Q ss_pred CccccccCceecchhhHhhhhc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHln 24 (124)
||.||+|-.-|..-.++.+|+-
T Consensus 15 gflCPiC~~dl~~~~~L~~H~d 36 (505)
T KOG1842|consen 15 GFLCPICLLDLPNLSALNDHLD 36 (505)
T ss_pred cccCchHhhhhhhHHHHHHHHh
Confidence 8999999999999999999983
No 69
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=51.87 E-value=5 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=20.3
Q ss_pred cccccCceecch---hhHhhhhccHHHHH
Q psy7022 5 YCNVCDCVVKDS---INFLDHINGKKHQR 30 (124)
Q Consensus 5 yC~vCd~~fkDs---~~~ldHlngk~H~~ 30 (124)
.|.+|+..+.-+ .-+.||+||+-|+-
T Consensus 187 vC~iCgayLsrlDtdrrladHf~GklHlG 215 (258)
T COG5200 187 VCGICGAYLSRLDTDRRLADHFNGKLHLG 215 (258)
T ss_pred hhhhhhhHHHhcchhhHHHHHhccchhhh
Confidence 599998765433 36889999999975
No 70
>KOG4055|consensus
Probab=51.43 E-value=62 Score=26.08 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=19.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7022 62 KDYDIEQRMRELKEEEEKLKEYRRERRKEK 91 (124)
Q Consensus 62 ~~~~~~eRl~~~~eeEek~re~rr~kkkek 91 (124)
.+..|..||...+..+|..-..+|.||..+
T Consensus 108 ~daefq~r~ek~~kaaEeKTaKKRaKRqk~ 137 (213)
T KOG4055|consen 108 LDAEFQIRLEKNQKAAEEKTAKKRAKRQKK 137 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577888887766666666666655443
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=47.45 E-value=60 Score=29.96 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=14.5
Q ss_pred cccccCceecchh--hHhhhh
Q psy7022 5 YCNVCDCVVKDSI--NFLDHI 23 (124)
Q Consensus 5 yC~vCd~~fkDs~--~~ldHl 23 (124)
.||+|+..|.+.. .+++|+
T Consensus 453 ~Cp~C~r~~~~~~~~~~~~~~ 473 (880)
T PRK02224 453 KCPECGQPVEGSPHVETIEED 473 (880)
T ss_pred cCCCCCCcCCCcchhhhHHHH
Confidence 6999999998877 455444
No 72
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=44.47 E-value=12 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.2
Q ss_pred CCccccccCceecc
Q psy7022 2 LGYYCNVCDCVVKD 15 (124)
Q Consensus 2 ~gfyC~vCd~~fkD 15 (124)
++++|+.|+-.|-|
T Consensus 31 p~~~C~~CGE~~~~ 44 (46)
T TIGR03831 31 PALVCPQCGEEYLD 44 (46)
T ss_pred CccccccCCCEeeC
Confidence 57899999987654
No 73
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=42.88 E-value=14 Score=28.80 Aligned_cols=44 Identities=16% Similarity=0.449 Sum_probs=31.5
Q ss_pred ccccccCceecchhhHhhhhccHHHHHHhcc-ccccccccHHHHH
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKKHQRNLGM-SMRVERSSLDQVK 47 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~H~~~~G~-s~~ver~tle~V~ 47 (124)
|.|.+|--.--..-....||-|+.|+--+-. .++..++|++=+.
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLq 45 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQ 45 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHH
Confidence 7899999887788899999999999753221 3455555554433
No 74
>KOG3623|consensus
Probab=41.70 E-value=11 Score=36.04 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=30.1
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHhccccccccccHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSSLDQ 45 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~ver~tle~ 45 (124)
-|.|.-|.+.|.-|-+|-.|.| |...+=-..+-+|++.++
T Consensus 950 PfQCdKClKRFSHSGSYSQHMN---HRYSYCKpyrEer~s~e~ 989 (1007)
T KOG3623|consen 950 PFQCDKCLKRFSHSGSYSQHMN---HRYSYCKPYREERASPED 989 (1007)
T ss_pred cchhhhhhhhcccccchHhhhc---cchhcccchhhccCChhh
Confidence 5889999999999999999999 544444445556666655
No 75
>KOG3623|consensus
Probab=41.63 E-value=9 Score=36.60 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=38.4
Q ss_pred CccccccCceecchhhHhhhhccHHHHHHh-------------cc-----ccccccccHHHHHHHHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGKKHQRNL-------------GM-----SMRVERSSLDQVKKRFDM 52 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk~H~~~~-------------G~-----s~~ver~tle~V~~rl~~ 52 (124)
-|-|+-|.+.|.-|-+|-.||.+|+=+-.. +- |---.+++..+.+.+|+.
T Consensus 309 PfeCpnCkKRFSHSGSySSHmSSKKCIsli~vngr~R~~lKt~~~Sp~saSsSp~~s~~pq~r~klen 376 (1007)
T KOG3623|consen 309 PFECPNCKKRFSHSGSYSSHMSSKKCISLILVNGRNRALLKTLEKSPGSASSSPRRSPSPQGRGKLEN 376 (1007)
T ss_pred CcCCcccccccccCCcccccccccchhhhhcccCcchhhhhhcccCCcccCCCCCCCCChhHhhhccC
Confidence 588999999999999999999999986221 11 112346888888888876
No 76
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=40.69 E-value=1.5e+02 Score=22.06 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7022 70 MRELKEEEEKLKEYRRE 86 (124)
Q Consensus 70 l~~~~eeEek~re~rr~ 86 (124)
|.+++++++.......+
T Consensus 37 v~er~~~~~~~~~~~~e 53 (134)
T PRK10328 37 TKERREEEEQQQRELAE 53 (134)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 77
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=40.66 E-value=15 Score=22.23 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.1
Q ss_pred ccccccCceecch-----hhHhhhhcc
Q psy7022 4 YYCNVCDCVVKDS-----INFLDHING 25 (124)
Q Consensus 4 fyC~vCd~~fkDs-----~~~ldHlng 25 (124)
-.|..|++.+.-. ++|..||..
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~ 45 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRR 45 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence 3699999999765 478888764
No 78
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=40.33 E-value=47 Score=25.51 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=11.0
Q ss_pred ccCceecchhhHhhhhccH
Q psy7022 8 VCDCVVKDSINFLDHINGK 26 (124)
Q Consensus 8 vCd~~fkDs~~~ldHlngk 26 (124)
||+..++|. +|-..|.+.
T Consensus 38 ~C~~HL~D~-~F~~p~~~~ 55 (182)
T PF08432_consen 38 VCPSHLKDR-QFATPIYDE 55 (182)
T ss_pred eCcccccCc-ccCCCCCCH
Confidence 666666666 666655444
No 79
>KOG3993|consensus
Probab=40.08 E-value=12 Score=33.46 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=21.9
Q ss_pred CccccccCceecchhhHhhhh-ccHHH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHI-NGKKH 28 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHl-ngk~H 28 (124)
-|-|+.||++|.--.++-.|- |+|--
T Consensus 295 EYrCPEC~KVFsCPANLASHRRWHKPR 321 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASHRRWHKPR 321 (500)
T ss_pred eecCCcccccccCchhhhhhhcccCCc
Confidence 378999999999999999998 55443
No 80
>PHA03123 dUTPase; Provisional
Probab=38.55 E-value=16 Score=32.19 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=10.8
Q ss_pred HHHhCCCCCCCCCC
Q psy7022 110 AAIMGFSGFGGGKK 123 (124)
Q Consensus 110 aamMGF~gFGssKK 123 (124)
-..=|.+|||||-|
T Consensus 388 pS~Rg~~GFGSTg~ 401 (402)
T PHA03123 388 PSDRGNKGFGSTDK 401 (402)
T ss_pred cccccCCCCCCCCC
Confidence 34569999999865
No 81
>KOG2894|consensus
Probab=38.42 E-value=1.2e+02 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy7022 41 SSLDQVKKRFDMNKKKY 57 (124)
Q Consensus 41 ~tle~V~~rl~~lk~k~ 57 (124)
+||++.+++=+.+.+..
T Consensus 67 VtL~Dmk~kqeniVreR 83 (331)
T KOG2894|consen 67 VTLDDMKAKQENIVRER 83 (331)
T ss_pred EEHHHHHHHHHHHHHHH
Confidence 67777776666654443
No 82
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=38.08 E-value=13 Score=16.39 Aligned_cols=7 Identities=57% Similarity=1.146 Sum_probs=5.3
Q ss_pred HhCCCCC
Q psy7022 112 IMGFSGF 118 (124)
Q Consensus 112 mMGF~gF 118 (124)
.|||-|.
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 5999773
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.89 E-value=10 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.6
Q ss_pred CccccccCceecchhhHhhhhc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHln 24 (124)
.+-||||+..|+.....-.++-
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCce
Confidence 4679999999998877766663
No 84
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=36.49 E-value=1.1e+02 Score=28.16 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=27.2
Q ss_pred cccccHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7022 38 VERSSLDQVKKRFDMNKKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKRK 94 (124)
Q Consensus 38 ver~tle~V~~rl~~lk~k~~~~~~~~~~~eRl~~~~eeEek~re~rr~kkkekk~~ 94 (124)
...-|+++++.|...|..-.. +-|-+=.+.++..--+=+.|+|-.|+++.+.
T Consensus 194 ~~~ms~eE~~~r~~el~~~R~-----L~~~~e~KakR~kKIKSK~yhri~kk~k~k~ 245 (735)
T PF04615_consen 194 LKKMSLEEAKERRAELAKMRA-----LMFYEEAKAKRIKKIKSKTYHRILKKEKEKE 245 (735)
T ss_pred hccCCHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 345788999988888766532 1111111111222224566666666665443
No 85
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=35.68 E-value=16 Score=27.42 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=9.1
Q ss_pred CCccccccCcee
Q psy7022 2 LGYYCNVCDCVV 13 (124)
Q Consensus 2 ~gfyC~vCd~~f 13 (124)
|--||++|+..+
T Consensus 43 G~v~CPvC~~~~ 54 (131)
T COG1645 43 GEVFCPVCGYRE 54 (131)
T ss_pred CeEECCCCCceE
Confidence 567999999633
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.32 E-value=1.8e+02 Score=25.12 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=14.5
Q ss_pred ccccccCceecchhhHhhhh
Q psy7022 4 YYCNVCDCVVKDSINFLDHI 23 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHl 23 (124)
-.||+|+..|.++...+..|
T Consensus 285 ~~Cp~C~~~~~~~~~~~~~l 304 (562)
T PHA02562 285 GVCPTCTQQISEGPDRITKI 304 (562)
T ss_pred CCCCCCCCcCCCcHHHHHHH
Confidence 37999999999984433333
No 87
>KOG1074|consensus
Probab=35.19 E-value=17 Score=35.07 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred CccccccCceecchhhHhhhh
Q psy7022 3 GYYCNVCDCVVKDSINFLDHI 23 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHl 23 (124)
.-||.||++.|..|.++.-|.
T Consensus 879 ~h~C~vCgk~FsSSsALqiH~ 899 (958)
T KOG1074|consen 879 AHVCNVCGKQFSSSAALEIHM 899 (958)
T ss_pred hhhhccchhcccchHHHHHhh
Confidence 359999999999999999887
No 88
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.77 E-value=14 Score=19.47 Aligned_cols=15 Identities=33% Similarity=0.953 Sum_probs=11.0
Q ss_pred cccccCceecchhhH
Q psy7022 5 YCNVCDCVVKDSINF 19 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ 19 (124)
||+-|+....+...|
T Consensus 1 ~Cp~CG~~~~~~~~f 15 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKF 15 (23)
T ss_pred CCcccCCCCCCcCcc
Confidence 688888777776655
No 89
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.65 E-value=2.9e+02 Score=23.53 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.0
Q ss_pred CCccccccCceecchh
Q psy7022 2 LGYYCNVCDCVVKDSI 17 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~ 17 (124)
+...|++|...++-+.
T Consensus 42 ~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 42 GSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCCCCCccchhh
Confidence 3457999998777665
No 90
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=34.50 E-value=1.1e+02 Score=24.21 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHhCCC
Q psy7022 109 LAAIMGFS 116 (124)
Q Consensus 109 maamMGF~ 116 (124)
-.=+||=|
T Consensus 166 yNPL~G~~ 173 (190)
T PF06936_consen 166 YNPLTGDG 173 (190)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 34445543
No 91
>KOG3576|consensus
Probab=34.26 E-value=15 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.677 Sum_probs=11.0
Q ss_pred ccccccCceecchhhHhhhh
Q psy7022 4 YYCNVCDCVVKDSINFLDHI 23 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHl 23 (124)
|-|.+|++.|..--++..||
T Consensus 174 ykc~~c~kaftqrcsleshl 193 (267)
T KOG3576|consen 174 YKCSLCEKAFTQRCSLESHL 193 (267)
T ss_pred cchhhhhHHHHhhccHHHHH
Confidence 45555555555555555554
No 92
>PF00692 dUTPase: dUTPase; InterPro: IPR008180 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA []. The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes []. Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process; PDB: 4DHK_A 1DUC_A 1DUN_A 3LQW_A 2BT1_A 2WE1_A 2WE0_A 2WE2_A 2BSY_A 2WE3_A ....
Probab=33.60 E-value=21 Score=25.23 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHHhCCCCCCCC
Q psy7022 110 AAIMGFSGFGGG 121 (124)
Q Consensus 110 aamMGF~gFGss 121 (124)
...+|-+|||||
T Consensus 117 ~~~rg~~Gfgst 128 (129)
T PF00692_consen 117 NTERGEGGFGST 128 (129)
T ss_dssp TSSSTTTSTTTT
T ss_pred CccCCCCCCCCC
Confidence 567899999997
No 93
>PHA03127 dUTPase; Provisional
Probab=33.06 E-value=20 Score=30.61 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=9.8
Q ss_pred HHHhCCCCCCCC
Q psy7022 110 AAIMGFSGFGGG 121 (124)
Q Consensus 110 aamMGF~gFGss 121 (124)
-..=|.+|||||
T Consensus 309 ~S~Rg~~GFGST 320 (322)
T PHA03127 309 SSARGDRGFGST 320 (322)
T ss_pred cccccCCCCCCC
Confidence 456799999998
No 94
>KOG3634|consensus
Probab=33.02 E-value=65 Score=28.02 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=8.8
Q ss_pred HHHHH-hCCCCCCC
Q psy7022 108 DLAAI-MGFSGFGG 120 (124)
Q Consensus 108 emaam-MGF~gFGs 120 (124)
-++.| ++|+|||.
T Consensus 181 tvakk~a~~~~fgn 194 (361)
T KOG3634|consen 181 TVAKKGAQNDGFGN 194 (361)
T ss_pred eeecccccchhHHH
Confidence 35555 78888874
No 95
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=32.83 E-value=26 Score=25.54 Aligned_cols=7 Identities=71% Similarity=1.322 Sum_probs=5.9
Q ss_pred hCCCCCC
Q psy7022 113 MGFSGFG 119 (124)
Q Consensus 113 MGF~gFG 119 (124)
||||=|+
T Consensus 106 mgf~LFd 112 (112)
T PTZ00373 106 LGFSLFG 112 (112)
T ss_pred ccccccC
Confidence 8999885
No 96
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=32.14 E-value=1.4e+02 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=7.5
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy7022 41 SSLDQVKKRFDMNKKKY 57 (124)
Q Consensus 41 ~tle~V~~rl~~lk~k~ 57 (124)
..+.+|+++...|+..+
T Consensus 41 ~~~~~~K~~ekElKeEK 57 (108)
T PF03879_consen 41 LELKAIKEKEKELKEEK 57 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 97
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=31.53 E-value=13 Score=22.73 Aligned_cols=8 Identities=50% Similarity=1.294 Sum_probs=6.8
Q ss_pred ccccccCc
Q psy7022 4 YYCNVCDC 11 (124)
Q Consensus 4 fyC~vCd~ 11 (124)
|||..|+.
T Consensus 2 yYCi~Cs~ 9 (41)
T PF13119_consen 2 YYCINCSE 9 (41)
T ss_pred EEEEEhHH
Confidence 89999965
No 98
>PHA03126 dUTPase; Provisional
Probab=31.14 E-value=22 Score=30.44 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.9
Q ss_pred HHHhCCCCCCCC
Q psy7022 110 AAIMGFSGFGGG 121 (124)
Q Consensus 110 aamMGF~gFGss 121 (124)
-..=|.+|||||
T Consensus 313 ~S~Rg~~GFGST 324 (326)
T PHA03126 313 SSLRADGGFGST 324 (326)
T ss_pred cccccCCCCCCC
Confidence 566799999998
No 99
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=30.73 E-value=13 Score=32.94 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=23.8
Q ss_pred cccccCceecchhhHhhhhccHHHHHHhccccc
Q psy7022 5 YCNVCDCVVKDSINFLDHINGKKHQRNLGMSMR 37 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ldHlngk~H~~~~G~s~~ 37 (124)
||+-|-.-|. +|..||-|..|.+=..-..+
T Consensus 424 YCENCreky~---~lE~Hi~s~~HrrFAEnd~N 453 (468)
T COG5067 424 YCENCREKYE---SLEQHIVSEKHRRFAENDLN 453 (468)
T ss_pred hhHHHHHHHH---HHHHHhhhhhhhhhhhcccc
Confidence 8999999887 48899999999884443333
No 100
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=30.11 E-value=10 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=18.4
Q ss_pred CccccccCceecchhhHhhhh
Q psy7022 3 GYYCNVCDCVVKDSINFLDHI 23 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHl 23 (124)
.|+|+.|-.++..-..++.|+
T Consensus 21 d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 21 DFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp -TTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHHhhhhhhc
Confidence 489999999999988999887
No 101
>KOG2462|consensus
Probab=29.92 E-value=26 Score=29.48 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=16.5
Q ss_pred CccccccCceecchhhHhhhhcc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlng 25 (124)
++-|.+|++-|...--|..||.+
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRT 209 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRT 209 (279)
T ss_pred CcccccccccccchHHhhccccc
Confidence 46677777777777777777754
No 102
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=29.64 E-value=2.4e+02 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=6.4
Q ss_pred HhhhhccHHHHHH
Q psy7022 19 FLDHINGKKHQRN 31 (124)
Q Consensus 19 ~ldHlngk~H~~~ 31 (124)
|+..||+-.-+++
T Consensus 4 ~lk~l~niR~lra 16 (135)
T PRK10947 4 ALKILNNIRTLRA 16 (135)
T ss_pred HHHHHHhHHHHHH
Confidence 4555554444443
No 103
>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap). These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].
Probab=29.45 E-value=1.6e+02 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=5.9
Q ss_pred ccccCceecchh
Q psy7022 6 CNVCDCVVKDSI 17 (124)
Q Consensus 6 C~vCd~~fkDs~ 17 (124)
|..|+..+..++
T Consensus 126 C~~CN~~~sgn~ 137 (189)
T PF05766_consen 126 CKHCNRHLSGNI 137 (189)
T ss_pred CCccccccccCH
Confidence 555555544443
No 104
>KOG2593|consensus
Probab=29.27 E-value=21 Score=31.72 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=30.0
Q ss_pred CCccccccCceecchh--hHhhhhccHHHHHHhcccccc--ccccHHHHHHHHHHHHH
Q psy7022 2 LGYYCNVCDCVVKDSI--NFLDHINGKKHQRNLGMSMRV--ERSSLDQVKKRFDMNKK 55 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~--~~ldHlngk~H~~~~G~s~~v--er~tle~V~~rl~~lk~ 55 (124)
+||-|+.|.+.|.+-- .+++--.+-+|=-+-|-.... ...+-.+++.+|..+-.
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~~~~~e~~~~l~~~~~ 184 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENKLPSKESRTALNRLME 184 (436)
T ss_pred ccccCCccccchhhhHHHHhhcccCceEEEecCCCchhcccccCchHHHHHHHHHHHH
Confidence 6899999999987643 444444455554444443222 23444555555544433
No 105
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=28.68 E-value=22 Score=30.72 Aligned_cols=10 Identities=20% Similarity=1.002 Sum_probs=8.2
Q ss_pred CccccccCce
Q psy7022 3 GYYCNVCDCV 12 (124)
Q Consensus 3 gfyC~vCd~~ 12 (124)
.|||++|+--
T Consensus 25 ~ffCPaC~~~ 34 (342)
T COG4469 25 RFFCPACGSQ 34 (342)
T ss_pred ccccCCCCCe
Confidence 5999999854
No 106
>PF05477 SURF2: Surfeit locus protein 2 (SURF2); InterPro: IPR008833 Surfeit locus protein 2 is part of a group of at least six sequence unrelated genes (Surf-1 to Surf-6). The six Surfeit genes have been classified as housekeeping genes, being expressed in all tissue types tested and not containing a TATA box in their promoter region. The exact function of SURF2 is unknown [].
Probab=28.57 E-value=30 Score=28.41 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=23.3
Q ss_pred CccccccCceec-chhhHhhhhccHHHHHHhcc
Q psy7022 3 GYYCNVCDCVVK-DSINFLDHINGKKHQRNLGM 34 (124)
Q Consensus 3 gfyC~vCd~~fk-Ds~~~ldHlngk~H~~~~G~ 34 (124)
-+||.+...... +-..-+.||||+..++++-.
T Consensus 79 ~LfCkLT~~~iNk~pe~V~rHv~GKRf~kaLek 111 (244)
T PF05477_consen 79 KLFCKLTGRHINKSPEHVERHVNGKRFQKALEK 111 (244)
T ss_pred eeEEechHhHhccCHHHHHHHhhhHHHHHHHHH
Confidence 467887766654 44588899999999886543
No 107
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=28.37 E-value=21 Score=22.27 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.8
Q ss_pred CccccccCce
Q psy7022 3 GYYCNVCDCV 12 (124)
Q Consensus 3 gfyC~vCd~~ 12 (124)
|++|+-|+-+
T Consensus 9 G~~CPgCG~t 18 (52)
T PF10825_consen 9 GIPCPGCGMT 18 (52)
T ss_pred CCCCCCCcHH
Confidence 8999999975
No 108
>PHA03129 dUTPase; Provisional
Probab=27.90 E-value=28 Score=31.02 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=9.3
Q ss_pred HHHhCCCCCCCC
Q psy7022 110 AAIMGFSGFGGG 121 (124)
Q Consensus 110 aamMGF~gFGss 121 (124)
-..=|.+|||||
T Consensus 423 ~S~Rg~~GFGST 434 (436)
T PHA03129 423 TSERQEGGFGST 434 (436)
T ss_pred cccccCCCCCCC
Confidence 456688889887
No 109
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=27.42 E-value=38 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=6.9
Q ss_pred ccHHHHHHHHHH
Q psy7022 41 SSLDQVKKRFDM 52 (124)
Q Consensus 41 ~tle~V~~rl~~ 52 (124)
+|.++|+.-|..
T Consensus 17 ~ta~~I~~IL~a 28 (105)
T cd04411 17 LTEDKIKELLSA 28 (105)
T ss_pred CCHHHHHHHHHH
Confidence 566666655543
No 110
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=26.95 E-value=26 Score=19.84 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.7
Q ss_pred CccccccCcee
Q psy7022 3 GYYCNVCDCVV 13 (124)
Q Consensus 3 gfyC~vCd~~f 13 (124)
.|+|..|+..+
T Consensus 16 ~~~C~~C~v~l 26 (32)
T PF13842_consen 16 RYMCSKCDVPL 26 (32)
T ss_pred EEEccCCCCcc
Confidence 59999998553
No 111
>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.
Probab=26.45 E-value=19 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=18.4
Q ss_pred ccccccCceecchhhHhhhhccHH
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKK 27 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~ 27 (124)
+.|.+|+..+.....=++||....
T Consensus 12 ~~C~~c~~~~~~~~~~v~Hi~p~~ 35 (57)
T cd00085 12 GLCPYCGKPGGTEGLEVDHIIPLS 35 (57)
T ss_pred CcCccCCCcCCCCCceEEeecchh
Confidence 689999999866666778886543
No 112
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.25 E-value=31 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.4
Q ss_pred CccccccCceecchh
Q psy7022 3 GYYCNVCDCVVKDSI 17 (124)
Q Consensus 3 gfyC~vCd~~fkDs~ 17 (124)
.|.|..|+..|.-..
T Consensus 5 ~y~C~~Cg~~fe~~~ 19 (41)
T smart00834 5 EYRCEDCGHTFEVLQ 19 (41)
T ss_pred EEEcCCCCCEEEEEE
Confidence 488999999886443
No 113
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=26.22 E-value=32 Score=23.81 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.0
Q ss_pred CCccccccCceecchhh
Q psy7022 2 LGYYCNVCDCVVKDSIN 18 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~ 18 (124)
++|+|+.|+-.|-|...
T Consensus 30 ~~~~C~~CGe~~~~~e~ 46 (127)
T TIGR03830 30 PGWYCPACGEELLDPEE 46 (127)
T ss_pred eeeECCCCCCEEEcHHH
Confidence 58999999998877654
No 114
>KOG2186|consensus
Probab=25.86 E-value=29 Score=29.13 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=19.1
Q ss_pred CCccccccCceecchhhHhhhhc
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHln 24 (124)
.-|-|.-|+.+|-+ ..|.+|+.
T Consensus 28 ~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 28 AYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred CeeEEeeccccccc-chhhhhhh
Confidence 35889999999999 89999973
No 115
>smart00400 ZnF_CHCC zinc finger.
Probab=25.65 E-value=44 Score=20.48 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred CCccccccCceecchhhHhhhhccHHH
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKH 28 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H 28 (124)
..|||-.|+..- |.+.|+.++.+...
T Consensus 22 n~~~Cf~cg~gG-d~i~fv~~~~~~sf 47 (55)
T smart00400 22 QFFHCFGCGAGG-NVISFLMKYDKLSF 47 (55)
T ss_pred CEEEEeCCCCCC-CHHHHHHHHHCcCH
Confidence 458999998765 77888888765443
No 116
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=25.21 E-value=26 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=5.2
Q ss_pred CCccccccCceec
Q psy7022 2 LGYYCNVCDCVVK 14 (124)
Q Consensus 2 ~gfyC~vCd~~fk 14 (124)
..|+|..||-.+.
T Consensus 14 ~~Y~C~~Cdf~lH 26 (30)
T PF07649_consen 14 WFYRCSECDFDLH 26 (30)
T ss_dssp -EEE-TTT-----
T ss_pred ceEECccCCCccC
Confidence 3688999987653
No 117
>PHA03130 dUTPase; Provisional
Probab=25.21 E-value=33 Score=29.91 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.2
Q ss_pred HHHHhCCCCCCCC
Q psy7022 109 LAAIMGFSGFGGG 121 (124)
Q Consensus 109 maamMGF~gFGss 121 (124)
+-..=|++|||||
T Consensus 354 p~S~R~~~GFGST 366 (368)
T PHA03130 354 PPSERGTGGFGST 366 (368)
T ss_pred CcccccCCCCCCC
Confidence 4556799999998
No 118
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.73 E-value=1.9e+02 Score=28.52 Aligned_cols=21 Identities=24% Similarity=0.692 Sum_probs=15.9
Q ss_pred cccccCceecchh---hHhhhhcc
Q psy7022 5 YCNVCDCVVKDSI---NFLDHING 25 (124)
Q Consensus 5 yC~vCd~~fkDs~---~~ldHlng 25 (124)
.|++|.+.|++.. .|+.||..
T Consensus 679 ~C~LC~R~f~~eee~~~f~~~L~~ 702 (1311)
T TIGR00606 679 CCPVCQRVFQTEAELQEFISDLQS 702 (1311)
T ss_pred cCCCCCCCCCChhHHHHHHHHHHH
Confidence 7999999999775 45555543
No 119
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=24.44 E-value=49 Score=23.84 Aligned_cols=7 Identities=57% Similarity=0.999 Sum_probs=5.5
Q ss_pred hCCCCCC
Q psy7022 113 MGFSGFG 119 (124)
Q Consensus 113 MGF~gFG 119 (124)
||||=|.
T Consensus 103 mGf~LFd 109 (109)
T cd05833 103 MGFGLFD 109 (109)
T ss_pred cCCCCCC
Confidence 7998774
No 120
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=24.11 E-value=33 Score=22.42 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=9.4
Q ss_pred HHHHHhCCCCCC
Q psy7022 108 DLAAIMGFSGFG 119 (124)
Q Consensus 108 emaamMGF~gFG 119 (124)
-++.-+||.||-
T Consensus 53 Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 53 RFCKKLGFSGFK 64 (77)
T ss_dssp HHHHHCTTTCHH
T ss_pred HHHHHhCCCCHH
Confidence 468889999983
No 121
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=23.81 E-value=3.2e+02 Score=21.02 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCccccccCceecchhhHhhhhccHHH-----HHHh------cc-------------ccccccccHHHHHHHHHHHHHH-
Q psy7022 2 LGYYCNVCDCVVKDSINFLDHINGKKH-----QRNL------GM-------------SMRVERSSLDQVKKRFDMNKKK- 56 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~~~ldHlngk~H-----~~~~------G~-------------s~~ver~tle~V~~rl~~lk~k- 56 (124)
+++=|-.||-.|......+.|---|.| +..+ +| -..|...||+.|..-|..--++
T Consensus 2 ~a~GCL~CDp~v~eal~~L~~~~lP~~~~~~~~~~~~~rl~~~m~~~~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl 81 (160)
T PF15005_consen 2 GARGCLQCDPSVVEALKSLRHDYLPSHLHVEGLQARAQRLLLEMEDFFFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRL 81 (160)
T ss_pred CCCeeeeCCHHHHHHHHHHHHHhCccccCcchHHHHHHHHHHHhhCccccccchhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 577799999999999988776655555 2222 22 1247778888887555422222
Q ss_pred HHhhhh-cccHHHHHHHHHHHHHHHHH
Q psy7022 57 YEQKKK-DYDIEQRMRELKEEEEKLKE 82 (124)
Q Consensus 57 ~~~~~~-~~~~~eRl~~~~eeEek~re 82 (124)
..+.-+ ..=|++=+..++......++
T Consensus 82 ~~s~~kg~~ll~EL~~~r~~~~~~lk~ 108 (160)
T PF15005_consen 82 TDSDLKGEPLLKELVWMRQNQKKELKK 108 (160)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 222222 23355555555555444433
No 122
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=23.73 E-value=39 Score=23.46 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=4.1
Q ss_pred HHHhCCCC
Q psy7022 110 AAIMGFSG 117 (124)
Q Consensus 110 aamMGF~g 117 (124)
..-|||-.
T Consensus 69 v~~~G~~~ 76 (81)
T PF00558_consen 69 VESMGFDN 76 (81)
T ss_dssp HH-GCCSS
T ss_pred HHHcCCCC
Confidence 33478753
No 123
>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]. This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.
Probab=23.55 E-value=19 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=12.5
Q ss_pred ccccCceecch-hhHhhhhccHHH
Q psy7022 6 CNVCDCVVKDS-INFLDHINGKKH 28 (124)
Q Consensus 6 C~vCd~~fkDs-~~~ldHlngk~H 28 (124)
|++|+..|... ..-++||....+
T Consensus 1 C~~C~~~~~~~~~~~v~Hi~~~~~ 24 (47)
T PF01844_consen 1 CQYCGKPGSDNESLHVHHIIPRSK 24 (47)
T ss_dssp -TTT--B--GG-GEEEEESS-TTT
T ss_pred CCCCCCcCccCcceEeECcCchhc
Confidence 89999999887 556788865554
No 124
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.55 E-value=1.5e+02 Score=19.80 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q psy7022 64 YDIEQRMRELKEEEEKLKEYRRERR 88 (124)
Q Consensus 64 ~~~~eRl~~~~eeEek~re~rr~kk 88 (124)
..+++||...+.+-++.++++..|.
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3478899998888888877766554
No 125
>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins.
Probab=23.48 E-value=30 Score=23.42 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=13.5
Q ss_pred CCccccccCceecchh
Q psy7022 2 LGYYCNVCDCVVKDSI 17 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~ 17 (124)
++..|.+|++++.|+.
T Consensus 48 ~~~~C~~C~R~L~d~~ 63 (72)
T PF04640_consen 48 SGNICETCHRSLQDPY 63 (72)
T ss_pred CCCccCCCCCCCCCCC
Confidence 4678999999999873
No 126
>KOG2893|consensus
Probab=22.99 E-value=37 Score=28.66 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=30.0
Q ss_pred ccccccCceecchhhHhhhhccHH------HHHH---hccc---cccccccHHHHH
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKK------HQRN---LGMS---MRVERSSLDQVK 47 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~------H~~~---~G~s---~~ver~tle~V~ 47 (124)
-||=+|++-|.|.-.++.|-.-+. |.+. -|.+ |.|-+-|+|-|-
T Consensus 11 pwcwycnrefddekiliqhqkakhfkchichkkl~sgpglsihcmqvhketid~ip 66 (341)
T KOG2893|consen 11 PWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLFSGPGLSIHCMQVHKETIDKIP 66 (341)
T ss_pred ceeeecccccchhhhhhhhhhhccceeeeehhhhccCCCceeehhhhhhhhhhccc
Confidence 489999999999999988765443 2221 1333 667777776664
No 127
>KOG3608|consensus
Probab=22.57 E-value=27 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.629 Sum_probs=18.4
Q ss_pred cccccCceecchhhHhhhhc
Q psy7022 5 YCNVCDCVVKDSINFLDHIN 24 (124)
Q Consensus 5 yC~vCd~~fkDs~~~ldHln 24 (124)
-|+.|+..|.....|.|||-
T Consensus 209 ACp~Cg~~F~~~tkl~DH~r 228 (467)
T KOG3608|consen 209 ACPHCGELFRTKTKLFDHLR 228 (467)
T ss_pred ecchHHHHhccccHHHHHHH
Confidence 59999999999999999984
No 128
>KOG2635|consensus
Probab=22.46 E-value=1.3e+02 Score=27.33 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=6.6
Q ss_pred ccHHHHHHHHH
Q psy7022 41 SSLDQVKKRFD 51 (124)
Q Consensus 41 ~tle~V~~rl~ 51 (124)
.+|-||+.-++
T Consensus 125 v~laQikty~e 135 (512)
T KOG2635|consen 125 VNLAQIKTYLE 135 (512)
T ss_pred ccHHHhhhhhc
Confidence 56677765444
No 129
>KOG0801|consensus
Probab=22.31 E-value=37 Score=26.97 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=11.4
Q ss_pred CCccccccCceecc
Q psy7022 2 LGYYCNVCDCVVKD 15 (124)
Q Consensus 2 ~gfyC~vCd~~fkD 15 (124)
.||-|+||.++.-.
T Consensus 137 ~g~KCPvC~K~V~s 150 (205)
T KOG0801|consen 137 SGMKCPVCHKVVPS 150 (205)
T ss_pred CCccCCccccccCC
Confidence 48999999997643
No 130
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=21.84 E-value=48 Score=20.02 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.8
Q ss_pred HHHHhCCCCCC
Q psy7022 109 LAAIMGFSGFG 119 (124)
Q Consensus 109 maamMGF~gFG 119 (124)
+|.+.||+|-.
T Consensus 9 iAg~lGF~Gia 19 (39)
T PF07043_consen 9 IAGVLGFGGIA 19 (39)
T ss_pred HHHHcCcccHH
Confidence 68899999854
No 131
>KOG3576|consensus
Probab=21.79 E-value=33 Score=28.32 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.3
Q ss_pred CccccccCceecchhhHhhhhcc
Q psy7022 3 GYYCNVCDCVVKDSINFLDHING 25 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlng 25 (124)
-|-|.||.+.|.=.--+..||.-
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kc 139 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKC 139 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhh
Confidence 47888888888888888888743
No 132
>COG5487 Small integral membrane protein [Function unknown]
Probab=21.62 E-value=49 Score=21.35 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.4
Q ss_pred HHHHHhCCCCCC
Q psy7022 108 DLAAIMGFSGFG 119 (124)
Q Consensus 108 emaamMGF~gFG 119 (124)
=+|+..||||--
T Consensus 13 lIa~~lGFgGia 24 (54)
T COG5487 13 LIAGALGFGGIA 24 (54)
T ss_pred HHHHHhCcccHH
Confidence 368899999854
No 133
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=21.59 E-value=37 Score=29.61 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=18.9
Q ss_pred CCCccccccCce----------ecchhhHhhhh-ccHHHHH
Q psy7022 1 MLGYYCNVCDCV----------VKDSINFLDHI-NGKKHQR 30 (124)
Q Consensus 1 ~~gfyC~vCd~~----------fkDs~~~ldHl-ngk~H~~ 30 (124)
.|||+|++|.-. +.-.+.+-.|| .|..|+.
T Consensus 306 ~gGy~CP~CktkVCsLPi~CP~Csl~LilsthLarSyhhL~ 346 (421)
T COG5151 306 GGGYECPVCKTKVCSLPISCPICSLQLILSTHLARSYHHLY 346 (421)
T ss_pred cCceeCCcccceeecCCccCcchhHHHHHHHHHHHHHHhhc
Confidence 379999988632 23345666788 5566654
No 134
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.43 E-value=59 Score=23.61 Aligned_cols=8 Identities=63% Similarity=0.791 Sum_probs=6.3
Q ss_pred HhCCCCCC
Q psy7022 112 IMGFSGFG 119 (124)
Q Consensus 112 mMGF~gFG 119 (124)
-||||=|+
T Consensus 106 DmGfgLFd 113 (113)
T PLN00138 106 DMGFSLFD 113 (113)
T ss_pred cccccccC
Confidence 48999875
No 135
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=21.15 E-value=1.1e+02 Score=25.44 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=14.9
Q ss_pred hhHhhhhccHHHHHHhccccc
Q psy7022 17 INFLDHINGKKHQRNLGMSMR 37 (124)
Q Consensus 17 ~~~ldHlngk~H~~~~G~s~~ 37 (124)
.+|...+.++.+....|...+
T Consensus 226 ~~~~~~~~S~ef~~~~g~~~~ 246 (293)
T PF09712_consen 226 EAYEELFRSEEFAQAYGQLVN 246 (293)
T ss_pred HHHHHHHCCHHHHHHHHHHHH
Confidence 367777888888887776443
No 136
>KOG1029|consensus
Probab=21.06 E-value=2.8e+02 Score=27.22 Aligned_cols=8 Identities=13% Similarity=0.659 Sum_probs=3.7
Q ss_pred cccHHHHH
Q psy7022 63 DYDIEQRM 70 (124)
Q Consensus 63 ~~~~~eRl 70 (124)
...++.+|
T Consensus 370 qlElekqL 377 (1118)
T KOG1029|consen 370 QLELEKQL 377 (1118)
T ss_pred HHHHHHHH
Confidence 34455444
No 137
>KOG3792|consensus
Probab=21.03 E-value=38 Score=32.24 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=27.0
Q ss_pred ccccccCceecchhhHhhhhccHHHHHHh
Q psy7022 4 YYCNVCDCVVKDSINFLDHINGKKHQRNL 32 (124)
Q Consensus 4 fyC~vCd~~fkDs~~~ldHlngk~H~~~~ 32 (124)
-||.+|-.+..-..+|..||-+..|+.+.
T Consensus 194 ~~~kw~k~~a~G~qs~re~lr~~r~l~kr 222 (816)
T KOG3792|consen 194 HYCKWCKISAAGPQTYREHLRGQKHLKKE 222 (816)
T ss_pred hhhHHHHHhccccHHHHHHHHHHHHHHhc
Confidence 39999999999999999999999998865
No 138
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=21.01 E-value=48 Score=19.78 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=9.3
Q ss_pred CCccccccCce
Q psy7022 2 LGYYCNVCDCV 12 (124)
Q Consensus 2 ~gfyC~vCd~~ 12 (124)
.||+|+-|+-.
T Consensus 17 ~g~~CP~Cg~~ 27 (46)
T PF12760_consen 17 DGFVCPHCGST 27 (46)
T ss_pred CCCCCCCCCCe
Confidence 58999999964
No 139
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=20.74 E-value=87 Score=18.97 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=15.4
Q ss_pred ecchhhHhhhhccHHHHH
Q psy7022 13 VKDSINFLDHINGKKHQR 30 (124)
Q Consensus 13 fkDs~~~ldHlngk~H~~ 30 (124)
+.|..+|.+|++++.|..
T Consensus 57 W~s~~a~~~~~~s~~~~~ 74 (78)
T PF03992_consen 57 WESEEAFQAHFKSPEFKA 74 (78)
T ss_dssp ESSHHHHHHHHTSHHHHH
T ss_pred ECCHHHHHHHHcCHHHHH
Confidence 567779999999999876
No 140
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.70 E-value=44 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.197 Sum_probs=12.8
Q ss_pred CCccccccCceecchh
Q psy7022 2 LGYYCNVCDCVVKDSI 17 (124)
Q Consensus 2 ~gfyC~vCd~~fkDs~ 17 (124)
..|.|+.|+..|...-
T Consensus 98 ~~Y~Cp~C~~~y~~~e 113 (147)
T smart00531 98 AYYKCPNCQSKYTFLE 113 (147)
T ss_pred cEEECcCCCCEeeHHH
Confidence 4688999999998544
No 141
>KOG2807|consensus
Probab=20.65 E-value=40 Score=29.36 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=6.6
Q ss_pred CCCccccccC
Q psy7022 1 MLGYYCNVCD 10 (124)
Q Consensus 1 ~~gfyC~vCd 10 (124)
.+||+|+.|.
T Consensus 274 ~~Gy~CP~Ck 283 (378)
T KOG2807|consen 274 GGGYFCPQCK 283 (378)
T ss_pred cCceeCCccc
Confidence 3678877654
No 142
>KOG1280|consensus
Probab=20.64 E-value=48 Score=28.98 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.9
Q ss_pred CccccccCceecchhhHhhhhccH
Q psy7022 3 GYYCNVCDCVVKDSINFLDHINGK 26 (124)
Q Consensus 3 gfyC~vCd~~fkDs~~~ldHlngk 26 (124)
.|-|++|++|=-....|..|+.+.
T Consensus 79 SftCPyC~~~Gfte~~f~~Hv~s~ 102 (381)
T KOG1280|consen 79 SFTCPYCGIMGFTERQFGTHVLSQ 102 (381)
T ss_pred cccCCcccccccchhHHHHHhhhc
Confidence 588999999999999999999653
No 143
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=20.61 E-value=1e+02 Score=21.49 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy7022 41 SSLDQVKKRFDMNKKKY 57 (124)
Q Consensus 41 ~tle~V~~rl~~lk~k~ 57 (124)
+|..||..+|..|+++=
T Consensus 49 ~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 49 VSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78899999999999883
No 144
>KOG2963|consensus
Probab=20.55 E-value=5.4e+02 Score=22.80 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=5.0
Q ss_pred ccHHHHHHHH
Q psy7022 41 SSLDQVKKRF 50 (124)
Q Consensus 41 ~tle~V~~rl 50 (124)
-|-|++++-.
T Consensus 316 Kt~eEi~~l~ 325 (405)
T KOG2963|consen 316 KTEEEIKALR 325 (405)
T ss_pred CCHHHHHHHH
Confidence 3556665433
No 145
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.39 E-value=3.9e+02 Score=20.73 Aligned_cols=10 Identities=30% Similarity=0.849 Sum_probs=6.5
Q ss_pred CccccccCce
Q psy7022 3 GYYCNVCDCV 12 (124)
Q Consensus 3 gfyC~vCd~~ 12 (124)
.|||..|=..
T Consensus 11 ~~~C~~C~~~ 20 (302)
T PF10186_consen 11 RFYCANCVNN 20 (302)
T ss_pred CeECHHHHHH
Confidence 5777777544
Done!