RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7022
(124 letters)
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 30.1 bits (68), Expect = 0.015
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 4 YYCNVCDCVVKDSINFLDHINGKKHQRNL 32
+ C C DS N H K H++ L
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDHKKRL 44
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 26.3 bits (58), Expect = 0.33
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 1 MLGYYCNVCDCVVKDS--INFLDHINGKKHQRNLGMSMRVERSSLDQVKKRFDMNKKKYE 58
M +YC+ CD + H +G+KH+ N + ++ +Q + D ++
Sbjct: 1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKEN--VKDYYQKWMEEQAQSLIDKTTAAFQ 58
Query: 59 QKK 61
Q K
Sbjct: 59 QGK 61
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 27.7 bits (61), Expect = 0.35
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 12/54 (22%)
Query: 54 KKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKRKLDDGEEEEEGDQS 107
Y K K Y+ EQ + + +K K +DG E Q+
Sbjct: 4 LADYPVKLKAYEDEQ------------ASIKAALAELEKHKNEDGNLTEPSAQN 45
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 27.2 bits (59), Expect = 0.64
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 52 MNKKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRK 89
+ ++ E + EQ+ EL+ +E+L + ER++
Sbjct: 1 LRQRTEELLRC---NEQQAAELETCKEQLFQSNMERKE 35
Score = 24.5 bits (52), Expect = 5.0
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 70 MRELKEEEEKLKEYRRERRKEKKRKLDDGEEE 101
+R+ EE + E + + K +L E
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNME 32
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 26.5 bits (58), Expect = 1.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 72 ELKEEEEKLKEYRRERRKEKKRKLDD--GEEEEEG-DQSDLAAIMGFSGFGGG 121
L ++E K +R++R++ + + G + EG + ++ G GGG
Sbjct: 8 ALCDQE---KTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVPVVAILGSGGG 57
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 26.2 bits (56), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 69 RMRELKEEEEKLKEYRRERRKEKK 92
+ +L++E E+LK R+ RK
Sbjct: 3 ELDQLRQEAEQLKNQIRDARKACA 26
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346,
JAZ) {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 55
Score = 24.5 bits (53), Expect = 1.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 4 YYCNVCDCVVKDSINFLDHINGKKHQRNL 32
C VC+ + H GK H +NL
Sbjct: 22 KCCPVCNMTFSSPVVAESHYIGKTHIKNL 50
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.9 bits (54), Expect = 2.5
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 48 KRFDMNKKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKRKLDDGEEEEE 103
++ ++ + Q + + E+KE ++ K +RRK R + G EEE
Sbjct: 54 EKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEE 109
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 24.8 bits (53), Expect = 2.9
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 75 EEEEKLKEYRRERRKEKKRK 94
E L ++ R K++
Sbjct: 138 TLTEHLSPFQAWRNFANKKE 157
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 24.7 bits (54), Expect = 3.1
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 55 KKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKRKLDDGEEEEEG 104
Y Q +K EQ+ + +E+++++ R + ++ K DG E+ G
Sbjct: 98 FDYFQLQK----EQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVG 143
>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
2 [TaxId: 10515]}
Length = 646
Score = 24.3 bits (53), Expect = 5.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 16 SINFLDHINGKKHQRNLGMSMR 37
S++++D++N H RN G+ R
Sbjct: 536 SLDYMDNVNPFNHHRNAGLRYR 557
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.9 bits (52), Expect = 6.8
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 55 KKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKRKLDDGEEEEEG 104
+Y + + E R + KEE+ K+KE + KE + D +E
Sbjct: 106 SQYFKAQT----EARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIA 151
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 23.6 bits (51), Expect = 8.6
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 54 KKKYEQKKKDYDIEQRMRELKEEEEKLKEYRRERRKEKKR 93
+KK+ ++ +Y E+ + +LK+E + + R + R
Sbjct: 248 EKKFIPREFNYS-EELIDQLKKEHDSAASLEQSLRVQLVR 286
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 22.5 bits (48), Expect = 8.6
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 46 VKKRFDMNKKKYEQKKKDYDIEQRMRELKEE---EEKLKEYRRERRKEKKRK 94
+ +R K +Y K K + E E +E + + E+ + ++ +
Sbjct: 20 LDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETD 71
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 23.4 bits (49), Expect = 9.5
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 80 LKEYRRERRKEKKRKLDDGEEEEEGDQSDLAAIMGFSGFGGGKK 123
+ K+ + L + + M + GGK+
Sbjct: 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKR 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.134 0.375
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,775
Number of extensions: 25109
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 158
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.9 bits)