BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7028
(707 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 489 DTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDV 539
DT ++VD T+ TPL +A H N+ EI K L+DRGA + + + +
Sbjct: 27 DTTYQVDEVD------TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSR-VNE 564
K+ TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R ++E
Sbjct: 154 KEETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLLDE 209
Query: 565 Y 565
Y
Sbjct: 210 Y 210
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 316 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAA 375
+D++KF Y L + A G + R YS S + P + PN+ E
Sbjct: 133 VDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSC-SWPAYMWPFQKPNYTEIRQY 191
Query: 376 CSKWRSFNNLFESSQS----LFWASF 397
C+ WR+F ++ +S +S L W SF
Sbjct: 192 CNHWRNFADIDDSWKSIKSILDWTSF 217
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 508 ITPLILAAHKNNYEILKILLDRGATLPMPHD 538
+TPL +A H NN +I+K+LL RG + PH
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGS---PHS 207
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSR-VNE 564
++ TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R ++E
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLLDE 212
Query: 565 Y 565
Y
Sbjct: 213 Y 213
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRV 562
K+ TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R+
Sbjct: 80 KEETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRL 132
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 316 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAA 375
+D++KF Y L + A G + R YS + P + PN+ E
Sbjct: 133 VDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPL-YMWPFQKPNYTEIRQY 191
Query: 376 CSKWRSFNNLFESSQS----LFWASF 397
C+ WR+F ++ +S +S L W SF
Sbjct: 192 CNHWRNFADIDDSWKSIKSILDWTSF 217
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 316 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAA 375
+D++KF Y L + A G + R YS + P + PN+ E
Sbjct: 133 VDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPL-YMWPFQKPNYTEIRQY 191
Query: 376 CSKWRSFNNLFESSQS----LFWASF 397
C+ WR+F ++ +S +S L W SF
Sbjct: 192 CNHWRNFADIDDSWKSIKSILDWTSF 217
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSR-VNEY 565
TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R ++EY
Sbjct: 193 TPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRLLDEY 246
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 508 ITPLILAAHKNNYEILKILLDRGATLPMPHDV-RCGCDTCLRESNED 553
ITPL LAA++ + EI+++LL GA + + D + NED
Sbjct: 114 ITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 592 LRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNH--DPETPYEEGEPMK 649
+ L E E +NE F DL S T EL+ L D E P EE E K
Sbjct: 16 VEQLGVDEAEVKNE--------ASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAE--K 65
Query: 650 LTRLELAIDY 659
+T ++ AIDY
Sbjct: 66 ITTVQAAIDY 75
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 93 DEVELELRKQCQQFAVDLLQQSRSTQELLTVLNH--DPETPYEEGEPMKLTRLELAIDY 149
DE E+ K F DL S T EL+ L D E P EE E K+T ++ AIDY
Sbjct: 22 DEAEV---KNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAE--KITTVQAAIDY 75
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRV 562
TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R+
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRL 241
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRV 562
TPL LAA + +YE K+LLD A D+ D R+ ++ + H + R+
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRL 241
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 498 DKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDV-RCGCDTCLRESNED 553
DKN S TPL LAA + E++K+LL+ GA + + D + NED
Sbjct: 54 DKNGS------TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED 104
>pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
Length = 308
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 12 KNQMWERRLMKNFQLTP-VVTAEDEVELVRNVEPAENED 49
K ++ E+R + N Q+ P VVT DE EL R +E E E+
Sbjct: 256 KEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLEREN 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,339,164
Number of Sequences: 62578
Number of extensions: 815288
Number of successful extensions: 2091
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2063
Number of HSP's gapped (non-prelim): 35
length of query: 707
length of database: 14,973,337
effective HSP length: 106
effective length of query: 601
effective length of database: 8,340,069
effective search space: 5012381469
effective search space used: 5012381469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)