Query psy7028
Match_columns 707
No_of_seqs 395 out of 1506
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:55:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3609|consensus 100.0 1.2E-88 2.7E-93 760.3 38.5 400 51-479 180-659 (822)
2 TIGR00870 trp transient-recept 100.0 3.1E-51 6.7E-56 487.3 36.7 438 54-521 177-743 (743)
3 KOG3609|consensus 100.0 1.6E-51 3.5E-56 461.9 17.1 201 502-707 126-326 (822)
4 KOG3614|consensus 100.0 2.9E-46 6.3E-51 433.0 29.4 416 15-500 528-1111(1381)
5 PLN03223 Polycystin cation cha 99.9 8.8E-27 1.9E-31 270.4 21.2 225 193-452 1176-1429(1634)
6 KOG3676|consensus 99.9 8.1E-24 1.7E-28 238.1 25.3 301 103-456 343-658 (782)
7 PF08016 PKD_channel: Polycyst 99.9 9.9E-22 2.1E-26 219.6 21.3 210 193-448 211-425 (425)
8 KOG3614|consensus 99.9 3.1E-22 6.7E-27 234.0 14.2 135 562-706 566-708 (1381)
9 KOG3599|consensus 99.8 1.1E-19 2.4E-24 212.1 22.6 219 191-454 464-688 (798)
10 PF08344 TRP_2: Transient rece 99.8 1.7E-21 3.7E-26 154.8 4.8 63 541-603 1-63 (63)
11 TIGR00870 trp transient-recept 99.7 2.6E-17 5.7E-22 196.6 15.7 200 503-706 124-328 (743)
12 KOG0510|consensus 99.7 5.5E-15 1.2E-19 166.3 20.7 200 193-454 563-766 (929)
13 PF00520 Ion_trans: Ion transp 99.6 1.4E-15 3E-20 150.4 12.8 198 197-441 1-200 (200)
14 KOG2301|consensus 99.6 1.6E-14 3.4E-19 177.8 15.7 217 184-453 1178-1408(1592)
15 KOG2302|consensus 99.2 2.5E-11 5.4E-16 137.7 10.7 222 184-450 1462-1689(1956)
16 KOG2302|consensus 99.0 2.4E-08 5.2E-13 114.1 21.7 213 200-456 1163-1399(1956)
17 KOG2301|consensus 99.0 1.9E-09 4.2E-14 133.6 11.8 194 193-449 473-666 (1592)
18 PF08344 TRP_2: Transient rece 98.8 1.9E-09 4.2E-14 86.2 1.4 45 48-95 12-62 (63)
19 KOG3733|consensus 97.7 0.00015 3.2E-09 77.8 8.5 172 225-451 341-513 (566)
20 KOG3713|consensus 96.9 0.041 8.9E-07 61.2 17.8 193 192-452 242-437 (477)
21 KOG1545|consensus 95.9 0.093 2E-06 55.9 12.0 121 190-335 253-378 (507)
22 KOG0498|consensus 92.9 0.84 1.8E-05 54.2 11.9 167 285-466 197-378 (727)
23 PF13606 Ank_3: Ankyrin repeat 89.1 0.54 1.2E-05 32.1 3.3 27 507-533 2-28 (30)
24 PF00023 Ank: Ankyrin repeat H 88.7 0.68 1.5E-05 32.0 3.7 30 506-535 1-30 (33)
25 PLN03192 Voltage-dependent pot 85.8 19 0.00041 44.3 16.4 28 508-535 526-553 (823)
26 KOG0515|consensus 78.8 5 0.00011 45.2 6.8 58 492-549 565-625 (752)
27 KOG3533|consensus 69.0 2.3E+02 0.005 36.3 17.4 33 419-451 2543-2575(2706)
28 PF13857 Ank_5: Ankyrin repeat 61.1 13 0.00029 28.9 3.9 34 503-536 12-45 (56)
29 KOG1419|consensus 55.6 16 0.00034 41.8 4.7 27 288-315 200-226 (654)
30 KOG4390|consensus 51.0 1.4 2.9E-05 47.7 -4.2 87 221-336 256-342 (632)
31 PF13637 Ank_4: Ankyrin repeat 48.8 22 0.00047 27.2 3.3 30 507-536 1-30 (54)
32 KOG0508|consensus 46.9 17 0.00037 40.8 3.2 79 501-596 111-191 (615)
33 PF12796 Ank_2: Ankyrin repeat 46.4 21 0.00046 29.9 3.2 30 504-533 56-85 (89)
34 smart00248 ANK ankyrin repeats 46.2 34 0.00073 20.5 3.5 27 507-533 2-28 (30)
35 KOG0510|consensus 43.5 49 0.0011 39.8 6.3 29 652-680 475-503 (929)
36 PRK13108 prolipoprotein diacyl 34.1 4.9E+02 0.011 29.8 12.3 29 224-252 123-151 (460)
37 KOG4412|consensus 29.6 39 0.00085 33.4 2.3 40 502-541 101-140 (226)
38 PF13980 UPF0370: Uncharacteri 28.9 92 0.002 24.8 3.8 28 197-224 9-36 (63)
39 PF12796 Ank_2: Ankyrin repeat 28.3 92 0.002 25.9 4.3 27 507-533 26-52 (89)
40 COG4272 Predicted membrane pro 26.8 31 0.00067 31.0 1.0 19 424-442 103-121 (125)
41 PRK10845 colicin V production 26.2 6E+02 0.013 24.5 10.2 34 303-336 47-81 (162)
42 PF09125 COX2-transmemb: Cytoc 25.6 1.4E+02 0.003 21.5 3.8 19 418-436 15-33 (38)
43 KOG0844|consensus 24.1 38 0.00083 35.7 1.2 22 77-98 182-203 (408)
44 PF06341 DUF1056: Protein of u 21.4 4.5E+02 0.0099 21.4 8.0 24 220-243 4-27 (63)
45 KOG4214|consensus 20.7 1E+02 0.0022 27.4 2.9 31 503-533 63-93 (117)
46 PF13637 Ank_4: Ankyrin repeat 20.3 1.1E+02 0.0024 23.1 3.0 25 503-527 30-54 (54)
No 1
>KOG3609|consensus
Probab=100.00 E-value=1.2e-88 Score=760.30 Aligned_cols=400 Identities=39% Similarity=0.620 Sum_probs=352.5
Q ss_pred hhHHHHHHHHhhhcccccccccchHhHHHHhHHh----hhhhhcccHHH---HHHHHHHHHHHHHHHHhcccCchHHHHH
Q psy7028 51 LDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQ----LTPVVTAEDEV---ELELRKQCQQFAVDLLQQSRSTQELLTV 123 (707)
Q Consensus 51 ~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~a~~----L~~la~~E~E~---y~~L~~~~e~fA~~LLd~cr~s~E~~~i 123 (707)
.+|.|.+||||++||+||++++ +|||+|||+ |++||.+|+|| |++|+.|||+||||||||||+|+|++.|
T Consensus 180 hS~srin~yraLaSpa~i~LsS---~DPiltAf~LS~eL~~La~~E~Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~i 256 (822)
T KOG3609|consen 180 HSLSRVNIYRALASPALIWLSS---DDPILTAFALSWDLQQLASDELEFKEDYRDLSMQCQRFAVDLLDQARTSDELEMI 256 (822)
T ss_pred chHHHHHHHHHhhcHHHHHccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 5999999999999999999998 899999996 68999999999 9999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCchhhHHHHHhcccccc---chhHHHHHHHH-----------------------------------
Q psy7028 124 LNHDPETPYEEGEPMKLTRLELAIDYKQKRC---LDCEILLLLVS----------------------------------- 165 (707)
Q Consensus 124 L~~~~~~~~~~~~~~~l~~L~lAi~~~qKkF---p~~Q~ll~l~s----------------------------------- 165 (707)
||++++. ++..++.+++|||+||+|+||+| ||||-++.-+.
T Consensus 257 Ln~~~~~-~~~~~~~sl~RLklAIkyeqK~FVahpNcQq~L~siWy~g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~ 335 (822)
T KOG3609|consen 257 LNNRNNC-PERMTRISLPRLKLAIKYEQKEFVAHPNCQQLLKSVWYSGWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPM 335 (822)
T ss_pred HcCCCCC-cccccccccHHHHHHHHHhhhheecCccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCC
Confidence 9998873 33334789999999999999999 99993221100
Q ss_pred -h---hhhHHHHHhhccccc---------------c--cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7028 166 -Q---RADVILLEYLGVTDN---------------H--ITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLK 224 (707)
Q Consensus 166 -~---~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~ 224 (707)
+ ....||+.|+.+..+ . ...+.+|++|+++||+++.||+|++|+|++++|..|++.|+.
T Consensus 336 S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~~~~~~~~g~~p~~vE~li~~wV~G~iw~E~k~lw~~G~~~y~~ 415 (822)
T KOG3609|consen 336 SRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFYFAWTDSRGVTPQALEILIYLWVMGLIWEEIKELWRVGRDGYLA 415 (822)
T ss_pred CcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 0 001122222221111 1 125688999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q psy7028 225 DMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHL 304 (707)
Q Consensus 225 d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~l 304 (707)
++||++|++++++|++++++|.+++.+..... ..+.+|.+|+++||++++|++||+++||+++|+++++++|+++
T Consensus 416 ~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~-----~~~~~R~~W~~~dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~l 490 (822)
T KOG3609|consen 416 FWWNWLDFAMISIYLASFILRAVAWGKREAFD-----PSSVDRMHWPSFDPSLLAEGLFAIANVLSFLKLFYIFTMNPSL 490 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----ccccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999998654331 2567999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccch
Q psy7028 305 GPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNN 384 (707)
Q Consensus 305 Gpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~ 384 (707)
||+||++|||++|+++|++||++|++||++|++||||||.+..+.+|.. +.|.+...|++
T Consensus 491 GPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~--------------------~~~~~~~~fst 550 (822)
T KOG3609|consen 491 GPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQ--------------------DYTKTTDSFST 550 (822)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccc--------------------ccccccccccc
Confidence 9999999999999999999999999999999999999998877766532 22334458999
Q ss_pred hHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC--------
Q psy7028 385 LFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG-------- 456 (707)
Q Consensus 385 ~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW-------- 456 (707)
+++|+++|||++||.+......+++.|.+++++|.++|++|+++++||||||||||||++||+|+|++|+||
T Consensus 551 i~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWKFARAKLw 630 (822)
T KOG3609|consen 551 IGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWKFARAKLW 630 (822)
T ss_pred HHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHHHHHHHHH
Confidence 999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred -----CCCcCCCCCc-CCCChhHHHhhhh
Q psy7028 457 -----PGIVHTQPFD-MPNLPTPLTLEEK 479 (707)
Q Consensus 457 -----~~~~lPpPfn-ip~~~~~~~~~~~ 479 (707)
++.++||||| +|+||++++...+
T Consensus 631 ~syF~eg~tLPpPFNlipspks~~~~~~~ 659 (822)
T KOG3609|consen 631 MSYFDEGMALPPPFNLIPSPKSFVYRNLR 659 (822)
T ss_pred HHHhcCCCCCCCCcccccchHHHHHHHhh
Confidence 8899999999 9999999987644
No 2
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=100.00 E-value=3.1e-51 Score=487.32 Aligned_cols=438 Identities=34% Similarity=0.526 Sum_probs=335.7
Q ss_pred HHHHHHHhhhcccccccccchHhHH--HHhHHh----hhhhhcccHHH---HHHHHHHHHHHHHHHHhcccCchHHHHHH
Q psy7028 54 FRRVAKLAVLNSTVIGKKNQMWERR--LMKNFQ----LTPVVTAEDEV---ELELRKQCQQFAVDLLQQSRSTQELLTVL 124 (707)
Q Consensus 54 ~r~~~~~~~~~~~~~~~~~~~~~~p--~~~a~~----L~~la~~E~E~---y~~L~~~~e~fA~~LLd~cr~s~E~~~iL 124 (707)
.+...+.+..++.++... .++| +.++.+ +..+|..+.|+ |.+++.+|.+|+++++++|++++|++.++
T Consensus 177 tpL~~Aa~~~~~~iv~lL---l~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~ 253 (743)
T TIGR00870 177 SPLNAAACLGSPSIVALL---SEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL 253 (743)
T ss_pred cHHHHHHHhCCHHHHHHH---hcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence 344444444445443322 2455 556654 45678888887 99999999999999999999999999999
Q ss_pred hCCCCCCCC---CCCCCchhhHHHHHhcccccc---chhHHHHH-------------------HHHh-------------
Q psy7028 125 NHDPETPYE---EGEPMKLTRLELAIDYKQKRC---LDCEILLL-------------------LVSQ------------- 166 (707)
Q Consensus 125 ~~~~~~~~~---~~~~~~l~~L~lAi~~~qKkF---p~~Q~ll~-------------------l~s~------------- 166 (707)
|++...|.. ...+..+.++.++++++||+| |+||..+. ++..
T Consensus 254 N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~ 333 (743)
T TIGR00870 254 NHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMY 333 (743)
T ss_pred CCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChHHHHHH
Confidence 987665431 233457889999999999999 88882110 0000
Q ss_pred ----------------------hhhHHHHHhhccc-cc------ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7028 167 ----------------------RADVILLEYLGVT-DN------HITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKD 217 (707)
Q Consensus 167 ----------------------~~~~~~~~~~~~~-~~------~~~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~ 217 (707)
..++.++.++... .. ....+.++++|++.|++++.|+.|++|+|++++|..
T Consensus 334 ~~~P~~~l~~~kw~pf~kf~~~~~~~~~fl~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 413 (743)
T TIGR00870 334 LIAPLSRLGQFKWKPFIKFIFHSASYLYFLYLIIFTSVAYYRPTRTDLRVTGLQQTPLEMLIVTWVDGLRLGEEKLIWLG 413 (743)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0001111111000 00 011235667899999999999999999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhh
Q psy7028 218 GLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHL 297 (707)
Q Consensus 218 G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~l 297 (707)
|.+.|+++.||++|++++.+|+++++++...+.....+ ....+..|..+++..++++++|++++++|+|++++
T Consensus 414 g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~a~~~~l~~~rll~~ 486 (743)
T TIGR00870 414 GIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQA-------FLVLREHWLRFDPTLIEEALFAFALVLSWLNLLYI 486 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhh-------hhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876533211 22457789999999999999999999999999999
Q ss_pred hhccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhh
Q psy7028 298 FSINPHLGPLQISLGRMII-DIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAAC 376 (707)
Q Consensus 298 l~~~~~lGpl~isl~rmi~-Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c 376 (707)
+++++++||+++|+++|+. |+++|++++++|++|||+|++++|++|.+.....|... . ....|
T Consensus 487 ~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~---------~-------~~~~~ 550 (743)
T TIGR00870 487 FRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNP---------H-------ARSCE 550 (743)
T ss_pred HhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc---------c-------ccccc
Confidence 9999999999999999999 99999999999999999999999998765443332211 0 12235
Q ss_pred ccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC
Q psy7028 377 SKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG 456 (707)
Q Consensus 377 ~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW 456 (707)
.++..|+++.+|+.++||++||.+++.. ..+.+++++|+++|++|+++++|||||||||||++||++|++++|.||
T Consensus 551 ~~~~~f~~~~~s~~~lf~~~~G~~~~~~----~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~w 626 (743)
T TIGR00870 551 KQGNAYSTLFETSQELFWAIIGLGDLLA----NEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEW 626 (743)
T ss_pred cccccccCHHHHHHHHHHHHcCCccccc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 5568999999999999999999987632 234557899999999999999999999999999999999999999999
Q ss_pred -------------CCCcCCCCCc-CCCChhHHHhhhhhh--------------c---c-c-------ccc----ccc---
Q psy7028 457 -------------PGIVHTQPFD-MPNLPTPLTLEEKKY--------------L---L-S-------VER----GDT--- 490 (707)
Q Consensus 457 -------------~~~~lPpPfn-ip~~~~~~~~~~~~~--------------~---~-~-------~~~----~~~--- 490 (707)
+++++||||| +|+|+++.++..+.+ + . . ..+ .++
T Consensus 627 k~~r~~~~~~y~~~~~~~p~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (743)
T TIGR00870 627 KFQRAKLWMSYEREGGTCPPPFNIIPGPKSFVGLFKRIEKHDGKKRQRWCRRVEEVNWTTWERKAETLIEDGLHYQRVMK 706 (743)
T ss_pred HHHHHHHHHHHHhcCCCCCCCceeccchHHHHHHHhhhhcccCcchHhHhhhhhhhccchhhhhhhhccccchhHHHHHH
Confidence 5689999999 999999876542211 0 0 0 000 011
Q ss_pred chhhhhhhhc------cCCCcCChHHHHHHHhhChHH
Q psy7028 491 ATSWEKVDKN------TSMFTKDITPLILAAHKNNYE 521 (707)
Q Consensus 491 ~lV~ryv~k~------~~~~~~dl~pl~~a~~~~~~e 521 (707)
.+++||+... +.+.++|+.++++++++.|||
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 743 (743)
T TIGR00870 707 RLIKRYVLAEQRPRDDEGTTEEETKELKQDISSLRFE 743 (743)
T ss_pred hhhhhhhhhhccccccCCCChhhHHHHHHHhhhccCC
Confidence 2478998764 238999999999999999986
No 3
>KOG3609|consensus
Probab=100.00 E-value=1.6e-51 Score=461.90 Aligned_cols=201 Identities=57% Similarity=0.915 Sum_probs=191.9
Q ss_pred CCCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCCccccccccccccchhhhhhhHHHHHHhhhchhHHhhhCCCh
Q psy7028 502 SMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDP 581 (707)
Q Consensus 502 ~~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~c~c~~c~~~~~~d~l~~s~~rl~~yral~sp~yi~l~~~dp 581 (707)
..|.+|+||+++|||+|+|||+++|+++||.+++||+++|.|.+|...+.+|++ ||++|+|+||||||||||||+|+||
T Consensus 126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~~C~C~~C~~~~~~dsl-hS~srin~yraLaSpa~i~LsS~DP 204 (822)
T KOG3609|consen 126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDIRCECKTCKRETVTDSL-HSLSRVNIYRALASPALIWLSSDDP 204 (822)
T ss_pred ccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCcccccCchHhhhccccCCc-chHHHHHHHHHhhcHHHHHccCCcH
Confidence 389999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHhcCCCCCCCCCCCCCccchHHHHHhcCc
Q psy7028 582 ILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQ 661 (707)
Q Consensus 582 i~~Af~ls~~L~~la~~e~e~~~ey~~la~~~e~fa~~Ll~~cr~s~E~~~~L~~~~~~~~~~~~~~~l~~L~lAi~~~q 661 (707)
|+|||+||++|++||.+|.||+++|++|+.||++||||||||||+++|++.+||+++.++ ..-+..+++||++||+|+|
T Consensus 205 iltAf~LS~eL~~La~~E~Efk~dY~~Ls~qcq~F~v~LLdq~r~s~Ele~iLn~~~~~~-~~~~~~sl~RLklAIkyeq 283 (822)
T KOG3609|consen 205 ILTAFALSWDLQQLASDELEFKEDYRDLSMQCQRFAVDLLDQARTSDELEMILNNRNNCP-ERMTRISLPRLKLAIKYEQ 283 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHcCCCCCc-ccccccccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999987532 2223678999999999999
Q ss_pred cccccchhHHHHHHHHHhCCCCCCCccchhHHHHHHHHhhhccccC
Q psy7028 662 KRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY 707 (707)
Q Consensus 662 k~FVAHp~~Q~~L~~~W~g~l~~~~~~~~~~~~l~~~~~~~~~p~~ 707 (707)
|+|||||||||+|+++||+ |||+++...|++.+.++++++|++
T Consensus 284 K~FVahpNcQq~L~siWy~---g~R~~~~~~K~~~~~~~~~~~P~~ 326 (822)
T KOG3609|consen 284 KEFVAHPNCQQLLKSVWYS---GWRRKGIKPKFDAWRFLRLCFPMP 326 (822)
T ss_pred hheecCccHHHHHHHHHhh---hhhhcchHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999 799999999999999999999963
No 4
>KOG3614|consensus
Probab=100.00 E-value=2.9e-46 Score=432.98 Aligned_cols=416 Identities=20% Similarity=0.302 Sum_probs=313.8
Q ss_pred HHHHHhhhcccccccccchhhHHHhhccCCCCCCChhhHHHHHHHHhhh----cccccccccchHhHHHHhHHh----hh
Q psy7028 15 MWERRLMKNFQLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAVL----NSTVIGKKNQMWERRLMKNFQ----LT 86 (707)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~p~~~a~~----L~ 86 (707)
-|..|+-+-++...+...++..-. +++|+.-..+|.+. +.+-.++. ...+++... |+|+..|.- +|
T Consensus 528 ~~~~r~~~~~~~~~~~~~~~~~~~-~~ee~~~s~yP~~d--LlIWAvL~~R~~MA~~~W~~g---ee~~AkALvA~rLyk 601 (1381)
T KOG3614|consen 528 FGVDRLGQGFGPPNVFCNDKSKRD-KSEEEDLSRYPIRD--LLIWAVLLNRQGMAKCLWAHG---EEAVAKALVASRLYK 601 (1381)
T ss_pred ccccccccccCCccccccccccCc-cchhhccccccHHH--HHHHHHHhccHHHHHHHHHhc---hhHHHHHHHHHHHHH
Confidence 455566555666666666554321 22333333556543 22222222 234566343 899988884 68
Q ss_pred hhhcccHH-H-----HHHHHHHHHHHHHHHHhcccCchHHH--HHHhCCCCCCCCCCCCCchhhHHHHHhcccccc---c
Q psy7028 87 PVVTAEDE-V-----ELELRKQCQQFAVDLLQQSRSTQELL--TVLNHDPETPYEEGEPMKLTRLELAIDYKQKRC---L 155 (707)
Q Consensus 87 ~la~~E~E-~-----y~~L~~~~e~fA~~LLd~cr~s~E~~--~iL~~~~~~~~~~~~~~~l~~L~lAi~~~qKkF---p 155 (707)
.||..++| . .+++++++++.|+||||+|++++|.. .+|.++.+ .|+ +.+||+||++++.|+| |
T Consensus 602 slA~ea~d~~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~LLt~el~-~W~-----~~tCL~LAv~a~~r~FiAH~ 675 (1381)
T KOG3614|consen 602 SLAHEAHDWHEAAKELKTLSDEFEGLAVELFDECYSSDEARALQLLTYELE-NWG-----NSTCLQLAVEANAREFIAHP 675 (1381)
T ss_pred HHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHh-hcc-----cccHHHHHHhcCCCceeccH
Confidence 88888877 2 88889999999999999999999988 77999887 786 5799999999999999 9
Q ss_pred hhHHHHH------------------------------HHHhh--------------------------------------
Q psy7028 156 DCEILLL------------------------------LVSQR-------------------------------------- 167 (707)
Q Consensus 156 ~~Q~ll~------------------------------l~s~~-------------------------------------- 167 (707)
+||.++. ++..+
T Consensus 676 c~Q~lLt~~W~G~L~~r~~~~~kvila~icpP~Il~l~~kfk~~~e~~~~t~~~~~~~~~~~~~~~~ss~~~~~~~~~~~ 755 (1381)
T KOG3614|consen 676 CCQMLLTDKWYGNLQARNNPIWKVILALICPPLILTLLVKFKMSEETPSQTVAELDVDKDPQKQRASSSYSSISSREEDL 755 (1381)
T ss_pred hHHHHHHHHHhccccccCCCcHHHHHHHHhhHHHHHhhcchhhhhccCcccchhhhccccccccccccccCcccchhccc
Confidence 9994331 00000
Q ss_pred ------------------------hhHHHHHhhcccccc-----------------cccccCCCCchHHHHHHHHHHHHH
Q psy7028 168 ------------------------ADVILLEYLGVTDNH-----------------ITGQQRGLAPSYLEYLVLLYVAGY 206 (707)
Q Consensus 168 ------------------------~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~E~ll~i~v~~~ 206 (707)
....+..|+.+|..+ ....+..+.|++.||+++.|++.+
T Consensus 756 ~~~~~~~~~~~~~~~~~~r~r~~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~~Ew~~~~~iftl 835 (1381)
T KOG3614|consen 756 EAGPLSTRSKGDQSMVFPRPRPLGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSMWEWILFAWIFTL 835 (1381)
T ss_pred ccccccccccCChhcccCCCCchhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHheeccCCCCCccchhHHHHHHHH
Confidence 001123455555432 234566678899999999999999
Q ss_pred HHHHHHHHHH-------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHH
Q psy7028 207 IWEETCEVWK-------DGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIA 279 (707)
Q Consensus 207 l~~Ei~ql~~-------~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia 279 (707)
.+||+||+.. ++++.||.++||.+|.+.+.+|++++++|+... ...+. +
T Consensus 836 ~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~-----------~~~~~-------------G 891 (1381)
T KOG3614|consen 836 FLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPI-----------DSIYS-------------G 891 (1381)
T ss_pred HHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCc-----------cceec-------------c
Confidence 9999999974 457889999999999999999999999998651 11222 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCC
Q psy7028 280 EGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTG 359 (707)
Q Consensus 280 ~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g 359 (707)
++++|+.++++++|+++++.+++.+||+++|++||++|++.|+++++++++|||++-+ +
T Consensus 892 RvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQ---------------------a 950 (1381)
T KOG3614|consen 892 RVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQ---------------------A 950 (1381)
T ss_pred eeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------h
Confidence 5799999999999999999999999999999999999999999999999999999963 4
Q ss_pred cCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccC-------------------CccchhHHHHH
Q psy7028 360 ALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKG-------------------IKSYTRFWGLL 420 (707)
Q Consensus 360 ~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~-------------------~~~~~~~~g~i 420 (707)
.+.|++.+.| ..|.+ .+..+|||+||++..++++.++ ...+..|+.++
T Consensus 951 Il~P~e~~~w----------~l~R~---i~y~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~pl 1017 (1381)
T KOG3614|consen 951 ILRPDEPRHW----------WLFRN---IFYWPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPL 1017 (1381)
T ss_pred hcCCCCCchH----------HHHHH---HHHHHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHH
Confidence 4567765443 44544 4678999999999877776543 11356799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC------------CCCcCCCCCc-CCCChhHHHhhhhhhcccccc
Q psy7028 421 MFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG------------PGIVHTQPFD-MPNLPTPLTLEEKKYLLSVER 487 (707)
Q Consensus 421 lf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW------------~~~~lPpPfn-ip~~~~~~~~~~~~~~~~~~~ 487 (707)
+.++|+++++|+|+||||||+|++|+.|++++|..| ++|.|||||+ +.|...+++.++++....+++
T Consensus 1018 Ll~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPfiilsHi~l~~~r~~~~~~~~~~~ 1097 (1381)
T KOG3614|consen 1018 LLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPFIILSHIYLLLKRLSNSFRGDKRA 1097 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHcccCccccc
Confidence 999999999999999999999999999999999999 8999999999 999999888776554321111
Q ss_pred ccc-chhhhhhhhc
Q psy7028 488 GDT-ATSWEKVDKN 500 (707)
Q Consensus 488 ~~~-~lV~ryv~k~ 500 (707)
.+. --.|.|++++
T Consensus 1098 ~~~~~~~klfls~e 1111 (1381)
T KOG3614|consen 1098 RDKDESLKLFLSKE 1111 (1381)
T ss_pred chhhhhhHhhCCHH
Confidence 111 2256666654
No 5
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.95 E-value=8.8e-27 Score=270.42 Aligned_cols=225 Identities=19% Similarity=0.295 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhcccc-
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDG-----LYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAE----IEANESS- 262 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G-----~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~----~~~~p~~- 262 (707)
-++|+++++|+++++++|+++++..| .+.||+++|||+|+++++|.++++++++.......+. +..+.+.
T Consensus 1176 LacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ 1255 (1634)
T PLN03223 1176 FAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKN 1255 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhh
Confidence 36899999999999999999998754 4699999999999999999999999876432111111 1101000
Q ss_pred -----ccc---cccccCc----CCh-------HHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHH
Q psy7028 263 -----KFL---GREHWNA----FDP-------QLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFF 323 (707)
Q Consensus 263 -----~~~---~r~~W~~----~dp-------~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~ 323 (707)
.+. ....+.. |.. ...-..+.++.++++++|++++++++++++.+..++.++.+||+.|++
T Consensus 1256 ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~I 1335 (1634)
T PLN03223 1256 LSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFV 1335 (1634)
T ss_pred hhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000111 100 001123667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCC
Q psy7028 324 IYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTD 403 (707)
Q Consensus 324 i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~ 403 (707)
+|++++++||+..+.+| |. ....|+++..|+.||||+++|++++-
T Consensus 1336 IF~IVF~AFAqLG~LLF------------------Gt-----------------~ve~FSTf~sSL~TLFqMLLGDfdYF 1380 (1634)
T PLN03223 1336 IFGMVFVGYAFIGHVIF------------------GN-----------------ASVHFSDMTDSINSLFENLLGDITYF 1380 (1634)
T ss_pred HHHHHHHHHHHHHHHHh------------------cc-----------------CchhhcCHHHHHHHHHHHHHcCchHH
Confidence 99999999996655543 21 12589999999999999999998742
Q ss_pred cccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcc
Q psy7028 404 KFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGV 452 (707)
Q Consensus 404 ~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~s 452 (707)
..+....+...+++|+++|++|++++++||||||||||+++|++|+++.
T Consensus 1381 ~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1381 NEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1112222345678999999999999999999999999999999998763
No 6
>KOG3676|consensus
Probab=99.92 E-value=8.1e-24 Score=238.11 Aligned_cols=301 Identities=19% Similarity=0.256 Sum_probs=209.5
Q ss_pred HHHHHHHHHhcccCchHHHHHHhCCCCCCCCCCCCCchhhHHHHHhccccccchhHHHHHHHHhhhhHHHHH--hhcccc
Q psy7028 103 CQQFAVDLLQQSRSTQELLTVLNHDPETPYEEGEPMKLTRLELAIDYKQKRCLDCEILLLLVSQRADVILLE--YLGVTD 180 (707)
Q Consensus 103 ~e~fA~~LLd~cr~s~E~~~iL~~~~~~~~~~~~~~~l~~L~lAi~~~qKkFp~~Q~ll~l~s~~~~~~~~~--~~~~~~ 180 (707)
|.-+-..-+|.|-+.+.+-.|.-++.+. +|...-.+.|+..++.|+|+|..-+|+..++....+.+.+. ++-.|.
T Consensus 343 sslYpL~~iDT~~n~~SvLeivvyg~~~---eHl~Ll~~~i~~LL~~KW~~f~k~~f~~~~~~~~~y~i~ft~~~y~RP~ 419 (782)
T KOG3676|consen 343 SSLYPLNSIDTIGNENSVLEIVVYGIKN---EHLELLDGPIEELLEDKWKAFGKKQFFMSLLIYLLYMICFTLAFYYRPA 419 (782)
T ss_pred cccccchhcccccchhhhhhhhhcCCcH---HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5556667788888777777666665331 23334557899999999999977777666655544433332 222221
Q ss_pred cc-------cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHH
Q psy7028 181 NH-------ITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDM-----WNFIDFTRNLLYVLVFMLRAMA 248 (707)
Q Consensus 181 ~~-------~~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~-----WN~lD~v~i~L~i~~~~lr~~~ 248 (707)
.. ......+......|.+.++|.+.++..|+..++.+|...|++.. ++++=+...++.++..++++..
T Consensus 420 ~~~~~~~~~~~~~~~~~~r~~~e~~~l~~~~~~~~~~~~~if~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~~~~i~~ 499 (782)
T KOG3676|consen 420 LEQAKLLDEAYINDYDELRLAGETLTLLGGILFLFCELPDIFLQGLPAYNGQLIDGPLFHVLGFLQAVLVLVSPVLRLGA 499 (782)
T ss_pred cccccchhhccccCchhhhhhhhHHHhhhhHhhhhhhhHhHHhcccHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111222456789999999999999999999888876665442 3333333334444444444433
Q ss_pred HHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHH-HHHHHHHHHHHH
Q psy7028 249 YVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMI-IDIVKFFFIYTL 327 (707)
Q Consensus 249 ~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi-~Di~~Fl~i~~l 327 (707)
.- | -..+++++.++.|.-++|+.|.++.+||+++||.+|+ +|+++|++|++|
T Consensus 500 ~~-------------------~--------~~~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~IY~V 552 (782)
T KOG3676|consen 500 IK-------------------W--------ELALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLLIYLV 552 (782)
T ss_pred HH-------------------H--------HHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 1358899999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccc
Q psy7028 328 VLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFEL 407 (707)
Q Consensus 328 vl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~ 407 (707)
|++|||.+|..++. + |.... .|+++.-+ .+..|. .+.++...+.++|-...|..|++..+
T Consensus 553 fl~GFsqAfy~if~---~-----~~~~~------~~~~~~~~--~~~m~~---~~ds~~~~~l~lf~ftig~~dl~~~~- 612 (782)
T KOG3676|consen 553 FLVGFSQAFYSIFQ---T-----CDRDS------SPNDKNVE--SNPMCN---PYDSFSTFLLTLFEFTIGMGDLEACE- 612 (782)
T ss_pred HHHHHHHHHHHHHc---C-----CCccc------cccccccc--ccccCC---hhhHHHHHHHHHHHHhhhhhhhhhcc-
Confidence 99999999877663 2 22110 01111000 111233 33446677889999888887766533
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC
Q psy7028 408 KGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG 456 (707)
Q Consensus 408 ~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW 456 (707)
+.-.++++.++|++|++++.|+|+|||||||++||++|.++++.||
T Consensus 613 ---~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~W 658 (782)
T KOG3676|consen 613 ---NTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEW 658 (782)
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH
Confidence 2335789999999999999999999999999999999999999999
No 7
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.88 E-value=9.9e-22 Score=219.64 Aligned_cols=210 Identities=26% Similarity=0.429 Sum_probs=172.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcccc--ccccc
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQA---EIEANESS--KFLGR 267 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~---~~~~~p~~--~~~~r 267 (707)
..+|++.++.++++++.|++++++.| +.|+++.||++|++.+++.++.+++++........ ....++.. ++..-
T Consensus 211 ~~~~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~ 289 (425)
T PF08016_consen 211 LLCEILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQEL 289 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHH
Confidence 45699999999999999999999999 69999999999999999999999888766542211 11122211 11111
Q ss_pred cccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7028 268 EHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELE 347 (707)
Q Consensus 268 ~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~ 347 (707)
..|+ .....+.|+.+++.|+|++++++++++++.+..++.++.+|+..|+++++++++|||..+..+++
T Consensus 290 a~~~-----~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG------ 358 (425)
T PF08016_consen 290 AQWD-----QLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFG------ 358 (425)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence 1121 23356889999999999999999999999999999999999999999999999999988766652
Q ss_pred hcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHH
Q psy7028 348 RKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSV 427 (707)
Q Consensus 348 ~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~l 427 (707)
. ....|+++..|+.++|.++.|+++++++. ...+++|++++.+|++
T Consensus 359 ------------~-----------------~~~~f~s~~~s~~tl~~~l~g~~~~~~~~-----~~~~~lg~l~~~~~~~ 404 (425)
T PF08016_consen 359 ------------S-----------------YSEDFSSFSSSLVTLFRMLLGDFDYDELY-----QANPVLGPLFFFSFMF 404 (425)
T ss_pred ------------C-----------------CccccCCHHHHHHHHHHHhcCCCchhhhh-----cccccHHHHHHHHHHH
Confidence 1 02579999999999999999999887654 2356899999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHhh
Q psy7028 428 INVIVLLNLLIAMMSNSYAMI 448 (707)
Q Consensus 428 i~~IVLLNLLIAmms~sy~~V 448 (707)
++.++++||+|||+.++|++|
T Consensus 405 ~~~~illNl~iaIi~~~y~~V 425 (425)
T PF08016_consen 405 LVFFILLNLFIAIINDSYEEV 425 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999976
No 8
>KOG3614|consensus
Probab=99.87 E-value=3.1e-22 Score=233.99 Aligned_cols=135 Identities=21% Similarity=0.295 Sum_probs=122.4
Q ss_pred HHHHHhhhchh----HHhhhCCChHHHHHHHHHHHHHhhhcc---HHHHHHHHHHHHHHHHHHHHHhhcc-CCcHHHHHH
Q psy7028 562 VNEYRALASPS----LIALSSNDPILTAFQLSWELRNLAFTE---PECRNEYMELRKQCQQFAVDLLQQS-RSTQELLTV 633 (707)
Q Consensus 562 l~~yral~sp~----yi~l~~~dpi~~Af~ls~~L~~la~~e---~e~~~ey~~la~~~e~fa~~Ll~~c-r~s~E~~~~ 633 (707)
|.+|+.|.++. |+|.+++||+++|+.+|+.++.||..+ .|.+++.+++|++|++.|++|||+| +++|+.+..
T Consensus 566 LlIWAvL~~R~~MA~~~W~~gee~~AkALvA~rLykslA~ea~d~~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~ 645 (1381)
T KOG3614|consen 566 LLIWAVLLNRQGMAKCLWAHGEEAVAKALVASRLYKSLAHEAHDWHEAAKELKTLSDEFEGLAVELFDECYSSDEARALQ 645 (1381)
T ss_pred HHHHHHHhccHHHHHHHHHhchhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88999999998 999999999999999999888888664 5578999999999999999999999 888888999
Q ss_pred hcCCCCCCCCCCCCCccchHHHHHhcCccccccchhHHHHHHHHHhCCCCCCCccchhHHHHHHHHhhhcccc
Q psy7028 634 LNHDPETPYEEGEPMKLTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPY 706 (707)
Q Consensus 634 L~~~~~~~~~~~~~~~l~~L~lAi~~~qk~FVAHp~~Q~~L~~~W~g~l~~~~~~~~~~~~l~~~~~~~~~p~ 706 (707)
|+.++++.|++.|| |++|++++.|+|+|||+||.+|+++|||++. -+++.+||++.+ .+|+|+
T Consensus 646 LLt~el~~W~~~tC-----L~LAv~a~~r~FiAH~c~Q~lLt~~W~G~L~--~r~~~~~kvila---~icpP~ 708 (1381)
T KOG3614|consen 646 LLTYELENWGNSTC-----LQLAVEANAREFIAHPCCQMLLTDKWYGNLQ--ARNNPIWKVILA---LICPPL 708 (1381)
T ss_pred HHHhHHhhcccccH-----HHHHHhcCCCceeccHhHHHHHHHHHhcccc--ccCCCcHHHHHH---HHhhHH
Confidence 99999999999999 9999999999999999999999999999983 266788888888 445554
No 9
>KOG3599|consensus
Probab=99.84 E-value=1.1e-19 Score=212.07 Aligned_cols=219 Identities=22% Similarity=0.384 Sum_probs=178.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-hhccc--ccc
Q psy7028 191 APSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAE---I-EANES--SKF 264 (707)
Q Consensus 191 ~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~---~-~~~p~--~~~ 264 (707)
.+-..|+++++++++|+++|+.+++..+.++|+++.||++|++++.+.++.+++.+....-.... . .+++. ..+
T Consensus 464 ~~~l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F 543 (798)
T KOG3599|consen 464 LIMLCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDF 543 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCH
Confidence 34568999999999999999999998888899999999999999999999888877664211111 1 11221 111
Q ss_pred ccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7028 265 LGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFT 344 (707)
Q Consensus 265 ~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~ 344 (707)
..-..|+ .++..+.|+.+++.|+|+++++++++.++.+..+|.+..+|++.|.++++++++|||.....+++
T Consensus 544 ~~~a~~~-----~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG--- 615 (798)
T KOG3599|consen 544 TEVAQWN-----IAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFG--- 615 (798)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 1122232 34678999999999999999999999999999999999999999999999999999987766541
Q ss_pred hhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHH
Q psy7028 345 ELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGS 424 (707)
Q Consensus 345 ~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~ 424 (707)
. ...+|+++.+|++++++.++|++.+.++. ..++++|+++|++
T Consensus 616 ---------------~-----------------~v~~f~~f~~s~~t~~~~~~G~~~~~~i~-----~~~r~LG~~~~~~ 658 (798)
T KOG3599|consen 616 ---------------N-----------------QVSDFRTFVASIVTLLRYILGDFCPAEIF-----HANRILGPLLFLT 658 (798)
T ss_pred ---------------C-----------------ccCChHHHHHHHHHHHHHHhccCCccccc-----cCCchHHHHHHHH
Confidence 0 12579999999999999999966655543 3468999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhcccc
Q psy7028 425 YSVINVIVLLNLLIAMMSNSYAMIEVGVEI 454 (707)
Q Consensus 425 Y~li~~IVLLNLLIAmms~sy~~V~~~sd~ 454 (707)
|++++..||+||+.|+|+++|+++++..+.
T Consensus 659 ~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 659 YVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 999999999999999999999999987654
No 10
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=99.84 E-value=1.7e-21 Score=154.85 Aligned_cols=63 Identities=68% Similarity=1.131 Sum_probs=61.6
Q ss_pred ccccccccccccchhhhhhhHHHHHHhhhchhHHhhhCCChHHHHHHHHHHHHHhhhccHHHH
Q psy7028 541 CGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECR 603 (707)
Q Consensus 541 c~c~~c~~~~~~d~l~~s~~rl~~yral~sp~yi~l~~~dpi~~Af~ls~~L~~la~~e~e~~ 603 (707)
|+|++|.+.+..|++++|+.|||+||||+||+||||+++|||++||+||++|+++|..|+|||
T Consensus 1 C~C~~C~~~~~~Dsl~~S~~rln~YrAlaSpayi~Lts~DPi~~AF~Ls~eL~~la~~E~Efk 63 (63)
T PF08344_consen 1 CGCDECKRKREEDSLRHSRSRLNTYRALASPAYISLTSDDPILTAFELSWELRELARIEKEFK 63 (63)
T ss_pred CCCccccchhhhchHHHHHHHHHHHHHHhCHHHHHHcCccHHHHHHHHHHHHHHHHHcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999986
No 11
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.73 E-value=2.6e-17 Score=196.62 Aligned_cols=200 Identities=46% Similarity=0.628 Sum_probs=179.6
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCCccccccccccccchhhhhhhHHHHHHhhhchhHHhhhCCCh-
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDP- 581 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~c~c~~c~~~~~~d~l~~s~~rl~~yral~sp~yi~l~~~dp- 581 (707)
.+..+.||+..|++++++|++++|+++|.++. .+|.|+.|......|...++..+|+.+++..+|.++.+..++|
T Consensus 124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~----~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga 199 (743)
T TIGR00870 124 EFTPGITALHLAAHRQNYEIVKLLLERGASVP----ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA 199 (743)
T ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC----cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc
Confidence 46789999999999999999999999999886 5788888988777788888888999999999999999999999
Q ss_pred -HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHhcCCCCCCCC---CCCCCccchHHHHH
Q psy7028 582 -ILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYE---EGEPMKLTRLELAI 657 (707)
Q Consensus 582 -i~~Af~ls~~L~~la~~e~e~~~ey~~la~~~e~fa~~Ll~~cr~s~E~~~~L~~~~~~~~~---~~~~~~l~~L~lAi 657 (707)
+.++...+++...+|..+.|++.+|.+++.+|.+++++++++|++++|+..+++.+...+.. ......+-++.+++
T Consensus 200 din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~ 279 (743)
T TIGR00870 200 DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI 279 (743)
T ss_pred chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876544321 22234677899999
Q ss_pred hcCccccccchhHHHHHHHHHhCCCCCCCccchhHHHHHHHHhhhcccc
Q psy7028 658 DYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPY 706 (707)
Q Consensus 658 ~~~qk~FVAHp~~Q~~L~~~W~g~l~~~~~~~~~~~~l~~~~~~~~~p~ 706 (707)
+++||+|+|||+||+.++..||+++++|++++..++++++..+.+.+|.
T Consensus 280 ~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~ 328 (743)
T TIGR00870 280 KYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPE 328 (743)
T ss_pred HHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChH
Confidence 9999999999999999999999999999999999999999887777664
No 12
>KOG0510|consensus
Probab=99.65 E-value=5.5e-15 Score=166.32 Aligned_cols=200 Identities=18% Similarity=0.255 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCc
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNA 272 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~ 272 (707)
.++-++++..++.....|+.|++.+.. +||.++=|++|+++++..++.+--.... .+.+|
T Consensus 563 ~~~~ili~~~i~~~~~~E~iQifqqk~-~Y~~~i~Nimew~iyts~li~v~~~~~~-----------------~~~~~-- 622 (929)
T KOG0510|consen 563 AFCMILIFTSIILGILRECIQIFQQKR-HYFMDIENIMEWFIYTSALITVYPLFFE-----------------ITAHL-- 622 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHhhhhheeehhhhh-----------------hHHHH--
Confidence 455566666677888999999999875 9999999999999888766532111000 00111
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q psy7028 273 FDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCY 352 (707)
Q Consensus 273 ~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~ 352 (707)
...+-|+++++.|++++-+++-.+.+|.+++|+..+.+.+++++.+|.++++||+.+|+.|+.
T Consensus 623 ------Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~----------- 685 (929)
T KOG0510|consen 623 ------QWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLN----------- 685 (929)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeec-----------
Confidence 235889999999999999999999999999999999999999999999999999999866541
Q ss_pred cccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCccccc----CCccchhHHHHHHHHHHHHH
Q psy7028 353 STMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELK----GIKSYTRFWGLLMFGSYSVI 428 (707)
Q Consensus 353 ~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~----~~~~~~~~~g~ilf~~Y~li 428 (707)
. ...|++.+-|..+.|-|+.|+.++...... ..+-..+.+..+.|++|+++
T Consensus 686 -----------~--------------~~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~If 740 (929)
T KOG0510|consen 686 -----------K--------------SSEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIF 740 (929)
T ss_pred -----------C--------------CCCcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHH
Confidence 0 135888889999999999999887621111 11123457889999999999
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcccc
Q psy7028 429 NVIVLLNLLIAMMSNSYAMIEVGVEI 454 (707)
Q Consensus 429 ~~IVLLNLLIAmms~sy~~V~~~sd~ 454 (707)
+.|||+||||++-...-+.|+.+++.
T Consensus 741 mtIvLMNLLiGLAV~DIq~vqk~A~L 766 (929)
T KOG0510|consen 741 MTIVLMNLLIGLAVGDIQGVQKHAEL 766 (929)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999773
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.64 E-value=1.4e-15 Score=150.38 Aligned_cols=198 Identities=26% Similarity=0.363 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCC
Q psy7028 197 YLVLLYVAGYIWEETCEVWKDGL--YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFD 274 (707)
Q Consensus 197 ~ll~i~v~~~l~~Ei~ql~~~G~--~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~d 274 (707)
|+-+++.+.+++|++.+++..|+ +.|++++||++|++++.++++..+.+.....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------------------ 56 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSA------------------------ 56 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccc------------------------
Confidence 45577889999999999999997 7999999999999998888766654432100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Q psy7028 275 PQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYST 354 (707)
Q Consensus 275 p~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~ 354 (707)
+. ..+.++..++.++|++++++.++.+|+++.++.++.+++.++++++++++++||++..+++..... ..|...
T Consensus 57 ~~---~~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~---~~~~~~ 130 (200)
T PF00520_consen 57 SA---QSLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN---SCCDPT 130 (200)
T ss_dssp HH---CHCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS----------
T ss_pred cc---cceEEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccc---cccccc
Confidence 00 246778888999999999999999999999999999999999999999999999998887643211 110000
Q ss_pred cccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHH
Q psy7028 355 MSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLL 434 (707)
Q Consensus 355 ~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLL 434 (707)
..+ .........|+++.+|+.+++..+.|+.+.+...... ....+.+.+++.+|.+++.++++
T Consensus 131 --------~~~-------~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~l~ 193 (200)
T PF00520_consen 131 --------WDS-------ENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCM--SARSWLAVIFFISFIIIVSILLL 193 (200)
T ss_dssp --------SS-----------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHH--HTTSTTHHHHHHHHHHHHHHHHH
T ss_pred --------ccc-------ccccccccccccccccccccccccccCCccccccccc--cccchhHhHHhhhhhhhHHHHHH
Confidence 000 0000123688999999999999999986654433110 12356788999999999999999
Q ss_pred HHHHHHH
Q psy7028 435 NLLIAMM 441 (707)
Q Consensus 435 NLLIAmm 441 (707)
|++||+|
T Consensus 194 nlliavi 200 (200)
T PF00520_consen 194 NLLIAVI 200 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999997
No 14
>KOG2301|consensus
Probab=99.58 E-value=1.6e-14 Score=177.83 Aligned_cols=217 Identities=17% Similarity=0.231 Sum_probs=172.2
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy7028 184 TGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSK 263 (707)
Q Consensus 184 ~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~ 263 (707)
...++.....++-++.++++..|+.|++.+++..|++.||++.||.+|++.+++.++.+++......
T Consensus 1178 ~~~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------- 1244 (1592)
T KOG2301|consen 1178 TYDQSDTYTAILTILNAVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------- 1244 (1592)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh-------------
Confidence 4444545556788899999999999999999999999999999999999999999998887654310
Q ss_pred cccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7028 264 FLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYF 343 (707)
Q Consensus 264 ~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y 343 (707)
...+...+.+...+...|++++++..+.+..|.-++..+++.+.+...+++++++.||+...|+|.+-
T Consensus 1245 ------------~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~V 1312 (1592)
T KOG2301|consen 1245 ------------YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYV 1312 (1592)
T ss_pred ------------hccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 11123477778888899999999999999999999999999999999999999999998888887532
Q ss_pred hhhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCc----------cccc----C
Q psy7028 344 TELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDK----------FELK----G 409 (707)
Q Consensus 344 ~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~----------~~~~----~ 409 (707)
. .. ..+ +..+|+++.+|+..||....|+---+. .+.+ +
T Consensus 1313 k------------------l~-~i~---------~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~ 1364 (1592)
T KOG2301|consen 1313 K------------------LG-GIN---------DHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNG 1364 (1592)
T ss_pred e------------------cc-ccC---------CCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcc
Confidence 1 11 000 236899999999999999988632110 0000 0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccc
Q psy7028 410 IKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVE 453 (707)
Q Consensus 410 ~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd 453 (707)
.+...+.+|+++|++|.+|+..|++||+||++.+.|+-+.+++.
T Consensus 1365 ~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s 1408 (1592)
T KOG2301|consen 1365 TDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSS 1408 (1592)
T ss_pred cccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 01223568999999999999999999999999999999988766
No 15
>KOG2302|consensus
Probab=99.24 E-value=2.5e-11 Score=137.71 Aligned_cols=222 Identities=21% Similarity=0.311 Sum_probs=161.9
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy7028 184 TGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSK 263 (707)
Q Consensus 184 ~~~~~~~~~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~ 263 (707)
...+...-..++.+..+.+.+.++.|-+.++...|.++||+|-||.+|+.+++|.+.++.+.-+.. |..
T Consensus 1462 hyqqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~---------naa-- 1530 (1956)
T KOG2302|consen 1462 HYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEI---------NAA-- 1530 (1956)
T ss_pred HHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheee---------ccc--
Confidence 344444445678888899999999999999999999999999999999999999999988763321 000
Q ss_pred cccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7028 264 FLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYF 343 (707)
Q Consensus 264 ~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y 343 (707)
+ +..| .+..+..++...|+++++...-.+..++-++...+..+....++|.+.++.||.-...||
T Consensus 1531 -l------pinp-----tiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaalgvelf--- 1595 (1956)
T KOG2302|consen 1531 -L------PINP-----TIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELF--- 1595 (1956)
T ss_pred -C------CCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHh---
Confidence 0 1123 355566777778888888888888899999999999999999999999999984434444
Q ss_pred hhhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccc---cC---CccchhHH
Q psy7028 344 TELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFEL---KG---IKSYTRFW 417 (707)
Q Consensus 344 ~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~---~~---~~~~~~~~ 417 (707)
+..+ |.. .+|++..+ ....|++|..+++|||....|+-.-...+. ++ .+.+..++
T Consensus 1596 g~le---c~e-------~npcegls---------rhatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~ 1656 (1956)
T KOG2302|consen 1596 GKLE---CNE-------ENPCEGLS---------RHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFV 1656 (1956)
T ss_pred cccc---cCC-------CCCccccc---------cccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhc
Confidence 3221 211 12332211 235789999999999999998633221110 11 23356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy7028 418 GLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEV 450 (707)
Q Consensus 418 g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~ 450 (707)
.+++|++|.+.+.+||+|..||++.+-.++-+.
T Consensus 1657 sp~yfvsfvltaqfvlvnvvvavlmkhleesnk 1689 (1956)
T KOG2302|consen 1657 SPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNK 1689 (1956)
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHhhch
Confidence 999999999999999999999998877665543
No 16
>KOG2302|consensus
Probab=99.02 E-value=2.4e-08 Score=114.14 Aligned_cols=213 Identities=20% Similarity=0.297 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHhhH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCCh
Q psy7028 200 LLYVAGYIWEETCEVWKDGL----YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDP 275 (707)
Q Consensus 200 ~i~v~~~l~~Ei~ql~~~G~----~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp 275 (707)
++|+..|+.|...++...|+ ..|+++.||.+|.+.+++.++-+.+....-. + .
T Consensus 1163 yIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~---------------g--------~ 1219 (1956)
T KOG2302|consen 1163 YIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAG---------------G--------A 1219 (1956)
T ss_pred hHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh---------------h--------H
Confidence 67788888888888887773 5899999999999988888776655433210 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhhhhhccccc
Q psy7028 276 QLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLW--YFTELERKDCYS 353 (707)
Q Consensus 276 ~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~--~y~~~~~~~c~~ 353 (707)
.+ -+++-+...+..+|-++.++..+.+--.+-+++..++.|...++|.+-+++.|++-..|||. +| -|..
T Consensus 1220 kI--LgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy------~c~g 1291 (1956)
T KOG2302|consen 1220 KI--LGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFY------HCLG 1291 (1956)
T ss_pred HH--HHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccce------eccc
Confidence 00 12444445555555666666667777778888999999999999999999999988888875 11 1221
Q ss_pred ccccCCcCCCCCCCCccc--chhhhcc--------ccccchhHHhHHHHHHHHcCC----CCCCccc---ccCCcc-chh
Q psy7028 354 TMSSTGALNPSEDPNWEE--HDAACSK--------WRSFNNLFESSQSLFWASFGS----TGTDKFE---LKGIKS-YTR 415 (707)
Q Consensus 354 ~~~~~g~l~p~~~~~~~~--~~~~c~~--------~~~F~~~~~S~~tLf~~lfG~----~~~~~~~---~~~~~~-~~~ 415 (707)
. |..+ ....|-. ..+|.+...++++||-..--+ +.+|..+ ++..+. -.+
T Consensus 1292 ~-------------dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhn 1358 (1956)
T KOG2302|consen 1292 V-------------DTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHN 1358 (1956)
T ss_pred c-------------ccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCC
Confidence 1 1100 0111221 147788888899998544221 1122221 111111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccccC
Q psy7028 416 FWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG 456 (707)
Q Consensus 416 ~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~eW 456 (707)
.|-.++|.+|.+|+...+||||+..+.+.|-+-.++.+.|=
T Consensus 1359 pwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~Ee 1399 (1956)
T KOG2302|consen 1359 PWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEE 1399 (1956)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999998888777665
No 17
>KOG2301|consensus
Probab=98.97 E-value=1.9e-09 Score=133.61 Aligned_cols=194 Identities=19% Similarity=0.242 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCc
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNA 272 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~ 272 (707)
..+.+..++++..|..|.+.+++.-|++.||..+||++|.+.+++.++... .. +
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~---~~----------------------~- 526 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL---LK----------------------N- 526 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc---cc----------------------c-
Confidence 456677788888899999999999999999999999999987774333222 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q psy7028 273 FDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCY 352 (707)
Q Consensus 273 ~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~ 352 (707)
..-+++...+..+|+.++....+++.-++.+++..++.+...+++++++++.||+-..|||. +
T Consensus 527 -------~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg---~------- 589 (1592)
T KOG2301|consen 527 -------VYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFG---G------- 589 (1592)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhC---c-------
Confidence 12344555666777777778888999999999999999999999999999999966667752 1
Q ss_pred cccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHH
Q psy7028 353 STMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIV 432 (707)
Q Consensus 353 ~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IV 432 (707)
..+++ |....+|.++++|++++|+.+.|++. +.+ .++......++..++|.+++++++.|
T Consensus 590 -------~~n~~-----------~~~~~~~~~fp~sfl~vFqlt~e~W~-evm-~~~~~~~~~~~~~i~Fi~~~l~gn~v 649 (1592)
T KOG2301|consen 590 -------VYNLH-----------CDIHWHFTDFPHSFLSVFQITCEEWT-DVM-WDCMEAAGQPLCAIYFIAYFLFGNLV 649 (1592)
T ss_pred -------ccCCC-----------CCCccchhhCHHHHHHHHHHcCCchH-HHH-HHHHHHhccchhhhHHHHHHHHHHHH
Confidence 11111 11114889999999999995555432 111 12333335577889999999999999
Q ss_pred HHHHHHHHHHhhHHhhh
Q psy7028 433 LLNLLIAMMSNSYAMIE 449 (707)
Q Consensus 433 LLNLLIAmms~sy~~V~ 449 (707)
+||+++|++.+++...+
T Consensus 650 vLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 650 VLNLFLALILDNFESDE 666 (1592)
T ss_pred HHHHHHHHHHhhchhhh
Confidence 99999999999998776
No 18
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=98.78 E-value=1.9e-09 Score=86.21 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=40.2
Q ss_pred CChh--hHHHHHHHHhhhcccccccccchHhHHHHhHHh----hhhhhcccHHH
Q psy7028 48 EDPL--DRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQ----LTPVVTAEDEV 95 (707)
Q Consensus 48 ~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~a~~----L~~la~~E~E~ 95 (707)
.|+| ++.|.++|+|++||+||++++ +|||++||+ |++||.+|+||
T Consensus 12 ~Dsl~~S~~rln~YrAlaSpayi~Lts---~DPi~~AF~Ls~eL~~la~~E~Ef 62 (63)
T PF08344_consen 12 EDSLRHSRSRLNTYRALASPAYISLTS---DDPILTAFELSWELRELARIEKEF 62 (63)
T ss_pred hchHHHHHHHHHHHHHHhCHHHHHHcC---ccHHHHHHHHHHHHHHHHHccccc
Confidence 4555 589999999999999999877 899999996 78999999997
No 19
>KOG3733|consensus
Probab=97.65 E-value=0.00015 Score=77.80 Aligned_cols=172 Identities=16% Similarity=0.271 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcc
Q psy7028 225 DMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHL 304 (707)
Q Consensus 225 d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~l 304 (707)
++|-|+=++..++.+++.++..--.... . ..+| +-..++....++.|+-+++++.+++.-
T Consensus 341 n~wyi~ii~~dvl~i~gs~~k~~iE~K~------------l-----~~yD---vCSI~LGtstLLVW~GVIRYLgfF~~Y 400 (566)
T KOG3733|consen 341 NGWYIMIIFSDVLTIIGSILKEQIEAKY------------L-----VSYD---VCSILLGTSTLLVWFGVIRYLGFFKTY 400 (566)
T ss_pred eeeeEEeeehhHHHHHHHHHHHHHHHHh------------h-----hHHH---HHHHHhCcchhHHHHHHHHHHHHHHhh
Confidence 3566666666677777776664321110 0 0111 234578888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccch
Q psy7028 305 GPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNN 384 (707)
Q Consensus 305 Gpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~ 384 (707)
..++.++.+.++.+++|+.--+++.+||.+..-.+..+|- ..|.+
T Consensus 401 NvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPYH-----------------------------------dKFrs 445 (566)
T KOG3733|consen 401 NVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPYH-----------------------------------DKFRS 445 (566)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecchH-----------------------------------Hhhhh
Confidence 9999999999999999999999999999844322222221 24555
Q ss_pred hHHhHHHHHHHHcCCCCCCcccccCCccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q psy7028 385 LFESSQSLFWASFGSTGTDKFELKGIKSYT-RFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVG 451 (707)
Q Consensus 385 ~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~-~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~ 451 (707)
+-....+||-.+=|+=-...+..-..++.- -+...+++-+|+-+-+-++|.|+||+++++|+.|+.-
T Consensus 446 LntvsECLFSLINGDDMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~ 513 (566)
T KOG3733|consen 446 LNTVSECLFSLINGDDMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAY 513 (566)
T ss_pred HHHHHHHHHHhhCchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHh
Confidence 555556666655553111111111112222 2345677767777777789999999999999999854
No 20
>KOG3713|consensus
Probab=96.95 E-value=0.041 Score=61.16 Aligned_cols=193 Identities=19% Similarity=0.332 Sum_probs=116.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy7028 192 PSYLEYLVLLYVAGYIWEETCEVWK-DGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHW 270 (707)
Q Consensus 192 ~s~~E~ll~i~v~~~l~~Ei~ql~~-~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W 270 (707)
-..+|.+-++|. ..|=+..+.. -...+|+++.=|++|+++++-|.+...+....- +...+ .
T Consensus 242 l~~vE~vCi~WF---T~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~-~~~~~---------l----- 303 (477)
T KOG3713|consen 242 LTYVETVCIAWF---TFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGG-ESLKE---------L----- 303 (477)
T ss_pred hHHHHHHHHHHH---HHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc-chHHH---------H-----
Confidence 356676666664 4444433332 233489999999999999998887776664431 00000 0
Q ss_pred CcCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy7028 271 NAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKD 350 (707)
Q Consensus 271 ~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~ 350 (707)
+ -+..+.-+..++..+|++++.|.+..|..|-.++.++.+.+.-.++.+++-++.||... ||.+.+
T Consensus 304 ---~---~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlv-----Y~~Ek~--- 369 (477)
T KOG3713|consen 304 ---E---NAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLV-----YFAEKD--- 369 (477)
T ss_pred ---h---hhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhc---
Confidence 0 01123444455556666666677777888999999999998777777777777777433 343211
Q ss_pred cccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCC--CCcccccCCccchhHHHHHHHHHHHHH
Q psy7028 351 CYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTG--TDKFELKGIKSYTRFWGLLMFGSYSVI 428 (707)
Q Consensus 351 c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~--~~~~~~~~~~~~~~~~g~ilf~~Y~li 428 (707)
.++ ..|.+++.+ ..|++..+.. |.|+.+ .-+.|.+. ++=.++
T Consensus 370 ---------------~~~-----------~~FtSIPa~---~WWaiVTMTTVGYGDm~P------~T~~Gklv-as~cil 413 (477)
T KOG3713|consen 370 ---------------EPD-----------TKFTSIPAG---FWWAVVTMTTVGYGDMVP------VTVLGKLV-ASLCIL 413 (477)
T ss_pred ---------------CCC-----------CCCccccch---hheeeEEEeeecccCccc------cccchHHH-HHHHHH
Confidence 001 246666543 4566544322 222221 11345543 444677
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhcc
Q psy7028 429 NVIVLLNLLIAMMSNSYAMIEVGV 452 (707)
Q Consensus 429 ~~IVLLNLLIAmms~sy~~V~~~s 452 (707)
+-|+++=|=|.||.|+|.+...+.
T Consensus 414 ~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 414 CGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred HhHHHhhcchHhHhhhHHHHHHHH
Confidence 778888899999999998877553
No 21
>KOG1545|consensus
Probab=95.89 E-value=0.093 Score=55.90 Aligned_cols=121 Identities=14% Similarity=0.230 Sum_probs=70.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy7028 190 LAPSYLEYLVLLYVAGYIWEETCEVWK--DGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGR 267 (707)
Q Consensus 190 ~~~s~~E~ll~i~v~~~l~~Ei~ql~~--~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r 267 (707)
.|.-++|.+-++|... |-+..... .+ ..|+++.-|++|+++++-|.+.++..+...... .++ +
T Consensus 253 dPFFiVEt~CIiWFtf---EllvRf~aCPsK-~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~-----g~~-----g- 317 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTF---ELLVRFFACPSK-ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGG-----GGQ-----G- 317 (507)
T ss_pred CchHhHHHHHHHHHhH---HHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcC-----Ccc-----c-
Confidence 4455788888777543 22223322 23 278999999999999999998888776542100 000 0
Q ss_pred cccCcCChHHHHHHHHHHHHHHHHHHHHhhhhccCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7028 268 EHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPH---LGPLQISLGRMIIDIVKFFFIYTLVLLSFACG 335 (707)
Q Consensus 268 ~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~---lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~ 335 (707)
. ...-+|+..++...|+++++..++| +-.+=.++.-.+..+.-.++.+++-++-|+.|
T Consensus 318 -------q---qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSa 378 (507)
T KOG1545|consen 318 -------Q---QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSA 378 (507)
T ss_pred -------h---hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhce
Confidence 0 0135666666777777777766666 44444456666665544444444444445444
No 22
>KOG0498|consensus
Probab=92.92 E-value=0.84 Score=54.20 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccccccCCcCCC
Q psy7028 285 GANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELER-KDCYSTMSSTGALNP 363 (707)
Q Consensus 285 i~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~-~~c~~~~~~~g~l~p 363 (707)
...++.+.|+.++.++.+.+--+.... .++.+...+.+.+.+.++.++.-...-+||+-+.++ ..|....+..+.+..
T Consensus 197 l~~il~~~rL~Rl~Rv~~l~~r~~k~~-~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~ 275 (727)
T KOG0498|consen 197 LVGILLLQRLPRLRRVIPLFARLEKDT-GFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR 275 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 345566777777777666555444333 344444445454555555555333334566654432 223321000000000
Q ss_pred CCCCCcccchhhhcc-ccccchhHHh---HHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7028 364 SEDPNWEEHDAACSK-WRSFNNLFES---SQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIA 439 (707)
Q Consensus 364 ~~~~~~~~~~~~c~~-~~~F~~~~~S---~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIA 439 (707)
-..|.. ...|+..... +.++||.+--... +.. |. ..+...+-.+|.+++.+...+|.=+||+
T Consensus 276 ---------~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLst---vG~-g~-~~s~~~~E~iFsi~~mi~GllL~A~lIG 341 (727)
T KOG0498|consen 276 ---------LLSCYNLSFTFGIYSLALKYVYALYWGLSTLST---VGY-GL-VHANNMGEKIFSIFIMLFGLLLFAYLIG 341 (727)
T ss_pred ---------ccccCcccccccchhHHHHHHHHHHHHhhHhhh---ccC-Cc-cCCCCcHHHHHHHHHHHHhHHHHHHHHh
Confidence 012322 0124443333 4466666532221 111 11 1123468889999999999999999999
Q ss_pred HHHhhHHhhhhcc--------c-ccC-CCCcCCCCCc
Q psy7028 440 MMSNSYAMIEVGV--------E-IEG-PGIVHTQPFD 466 (707)
Q Consensus 440 mms~sy~~V~~~s--------d-~eW-~~~~lPpPfn 466 (707)
=|++--|+..... | .+| .+.-||+|+.
T Consensus 342 Nmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LR 378 (727)
T KOG0498|consen 342 NMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLR 378 (727)
T ss_pred hHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 9988777766432 2 233 6677787754
No 23
>PF13606 Ank_3: Ankyrin repeat
Probab=89.06 E-value=0.54 Score=32.06 Aligned_cols=27 Identities=52% Similarity=0.693 Sum_probs=24.6
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
+-||+-.|+..+++|+++.|+++|.++
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADV 28 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 568999999999999999999999765
No 24
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=88.73 E-value=0.68 Score=31.96 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=26.8
Q ss_pred CChHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 506 KDITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 506 ~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
++.||+..|+..++.+++++|+++|.++..
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA 30 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 367999999999999999999999988754
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=85.79 E-value=19 Score=44.26 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=20.8
Q ss_pred hHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 508 ITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 508 l~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
-+++..|+..++.++++.|+++|.++..
T Consensus 526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~ 553 (823)
T PLN03192 526 ASNLLTVASTGNAALLEELLKAKLDPDI 553 (823)
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 4667778888888888888888876543
No 26
>KOG0515|consensus
Probab=78.82 E-value=5 Score=45.23 Aligned_cols=58 Identities=22% Similarity=0.195 Sum_probs=46.4
Q ss_pred hhhhhhhhccC---CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCCccccccccc
Q psy7028 492 TSWEKVDKNTS---MFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRE 549 (707)
Q Consensus 492 lV~ryv~k~~~---~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~c~c~~c~~~ 549 (707)
+|.|-+.+.++ .++.+||++-.|+.-.+|+||+.|++.|.++..++..+.....|...
T Consensus 565 lVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAAS 625 (752)
T KOG0515|consen 565 LVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAAS 625 (752)
T ss_pred HHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhh
Confidence 37777776644 78889999999999999999999999999998777666554445433
No 27
>KOG3533|consensus
Probab=68.97 E-value=2.3e+02 Score=36.27 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q psy7028 419 LLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVG 451 (707)
Q Consensus 419 ~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~ 451 (707)
.++=.+|.+|++||+|||.-+++-+||.....+
T Consensus 2543 V~YDllFffivIiIVLNLIFGVIIDTFaDLRsE 2575 (2706)
T KOG3533|consen 2543 VAYDLLFFFIVIIIVLNLIFGVIIDTFADLRSE 2575 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 344467889999999999999999999988755
No 28
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=61.10 E-value=13 Score=28.88 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+.||+..|+..++.+++++|++.|.++...
T Consensus 12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~ 45 (56)
T PF13857_consen 12 QDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAK 45 (56)
T ss_dssp --TTS--HHHHHHHHT-HHHHHHHHHCT--TT--
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCC
Confidence 4567789999999999999999999999877544
No 29
>KOG1419|consensus
Probab=55.64 E-value=16 Score=41.79 Aligned_cols=27 Identities=15% Similarity=0.380 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhhccCcchHHHHHHHHHH
Q psy7028 288 VFSALKLVHLFSINPHLGPLQISLGRMI 315 (707)
Q Consensus 288 vl~~lRll~ll~~~~~lGpl~isl~rmi 315 (707)
-+.|+.+++++++.++-|.+ .-+|.|+
T Consensus 200 slRFlQILRmlr~DRrggTW-KLLGSvV 226 (654)
T KOG1419|consen 200 SLRFLQILRMLRMDRRGGTW-KLLGSVV 226 (654)
T ss_pred hhHHHHHHHHHHhhccCchh-hhhhhhh
Confidence 35678888888888887776 4556655
No 30
>KOG4390|consensus
Probab=51.02 E-value=1.4 Score=47.68 Aligned_cols=87 Identities=22% Similarity=0.383 Sum_probs=59.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy7028 221 RYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSI 300 (707)
Q Consensus 221 ~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~~vl~~lRll~ll~~ 300 (707)
+|+++.-.++|++.+.-|-++.++.- |. -+ .+.|....+|..+|++++-+.
T Consensus 256 rF~RSvMSiIDVvAIlPYYigLv~t~------------N~----------------DV-SGaFVTLRVFRVFRIFKFSRH 306 (632)
T KOG4390|consen 256 RFLRSVMSIIDVVAILPYYIGLVMTD------------NE----------------DV-SGAFVTLRVFRVFRIFKFSRH 306 (632)
T ss_pred HHHHHHHHHHHHhhhhhhheEEEecC------------Cc----------------cc-cceeEEEEeeeeeeeeeeccc
Confidence 68899999999998887776654321 00 01 122323334445555566666
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7028 301 NPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGL 336 (707)
Q Consensus 301 ~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l 336 (707)
++.+..+=-++..+...+...++-+.+.++.||..+
T Consensus 307 SQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvM 342 (632)
T KOG4390|consen 307 SQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVM 342 (632)
T ss_pred ccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 667888888888888999888888888999999655
No 31
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=48.76 E-value=22 Score=27.18 Aligned_cols=30 Identities=43% Similarity=0.615 Sum_probs=23.4
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
+.+|+..|+..++.|+++.|+++|.++...
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~ 30 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQ 30 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence 357899999999999999999988776444
No 32
>KOG0508|consensus
Probab=46.88 E-value=17 Score=40.76 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred cCCCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCCcccc--ccccccccchhhhhhhHHHHHHhhhchhHHhhhC
Q psy7028 501 TSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCD--TCLRESNEDSLRHSMSRVNEYRALASPSLIALSS 578 (707)
Q Consensus 501 ~~~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~c~c~--~c~~~~~~d~l~~s~~rl~~yral~sp~yi~l~~ 578 (707)
+..+.+.-||++.|+-..++|++++|+++|.+...+...+..|- .|.++... . ..|+-..+
T Consensus 111 N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~-I----------------~qyLle~g 173 (615)
T KOG0508|consen 111 NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD-I----------------AQYLLEQG 173 (615)
T ss_pred ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH-H----------------HHHHHHhC
Confidence 44677778999999999999999999999998877766555543 34433321 1 12555566
Q ss_pred CChHHHHHHHHHHHHHhh
Q psy7028 579 NDPILTAFQLSWELRNLA 596 (707)
Q Consensus 579 ~dpi~~Af~ls~~L~~la 596 (707)
-|+-.++-+....|..+|
T Consensus 174 ADvn~ks~kGNTALH~ca 191 (615)
T KOG0508|consen 174 ADVNAKSYKGNTALHDCA 191 (615)
T ss_pred CCcchhcccCchHHHhhh
Confidence 666655554444444444
No 33
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=46.44 E-value=21 Score=29.93 Aligned_cols=30 Identities=40% Similarity=0.512 Sum_probs=26.2
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
...+.||+..|+..++.|++++|+++|.++
T Consensus 56 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 85 (89)
T PF12796_consen 56 DKNGNTALHYAAENGNLEIVKLLLEHGADV 85 (89)
T ss_dssp STTSSBHHHHHHHTTHHHHHHHHHHTTT-T
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 367899999999999999999999998765
No 34
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=46.23 E-value=34 Score=20.55 Aligned_cols=27 Identities=52% Similarity=0.808 Sum_probs=23.0
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
+.+|+..++..++.++++.++++|..+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 457888999999999999999888654
No 35
>KOG0510|consensus
Probab=43.50 E-value=49 Score=39.76 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=26.9
Q ss_pred hHHHHHhcCccccccchhHHHHHHHHHhC
Q psy7028 652 RLELAIDYKQKRFVAHSNIQQLLAAMWYD 680 (707)
Q Consensus 652 ~L~lAi~~~qk~FVAHp~~Q~~L~~~W~g 680 (707)
-+..+++.+|+.-..||-||.+|---|..
T Consensus 475 ~~~~mv~~~~~eLL~HPL~ssfL~mKW~~ 503 (929)
T KOG0510|consen 475 ILNIMVDKEQIELLEHPLSSSFLFMKWNR 503 (929)
T ss_pred HHHHHhhhhHHHHhcChhHHHHHHHHHHH
Confidence 48999999999999999999999999875
No 36
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=34.10 E-value=4.9e+02 Score=29.78 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=24.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7028 224 KDMWNFIDFTRNLLYVLVFMLRAMAYVQQ 252 (707)
Q Consensus 224 ~d~WN~lD~v~i~L~i~~~~lr~~~~~~~ 252 (707)
-++|-++|.+...+.+...+-|+-++++.
T Consensus 123 i~~~~~~D~~ap~l~lGqaiGRiGnF~Ng 151 (460)
T PRK13108 123 IPLPVLLDAVAPGVVLAQAIGRLGNYFNQ 151 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35799999999999998888899887643
No 37
>KOG4412|consensus
Probab=29.62 E-value=39 Score=33.45 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCCc
Q psy7028 502 SMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRC 541 (707)
Q Consensus 502 ~~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~c 541 (707)
..++.+-|++-.|+.++|+||..+|+++|..+..-....|
T Consensus 101 a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~q 140 (226)
T KOG4412|consen 101 ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQ 140 (226)
T ss_pred eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccC
Confidence 3788999999999999999999999999987765544443
No 38
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=28.90 E-value=92 Score=24.85 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy7028 197 YLVLLYVAGYIWEETCEVWKDGLYRYLK 224 (707)
Q Consensus 197 ~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~ 224 (707)
|++++..+|+++.-|+++.+.-.++|+.
T Consensus 9 WiiLl~lvG~i~n~iK~L~RvD~K~fL~ 36 (63)
T PF13980_consen 9 WIILLILVGMIINGIKELRRVDHKKFLD 36 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhc
Confidence 5667777788888888777766666654
No 39
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.32 E-value=92 Score=25.93 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=24.6
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
+-+|+..|+..++.++++.|+++|.++
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~ 52 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADI 52 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccc
Confidence 557999999999999999999999866
No 40
>COG4272 Predicted membrane protein [Function unknown]
Probab=26.78 E-value=31 Score=30.99 Aligned_cols=19 Identities=47% Similarity=0.791 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7028 424 SYSVINVIVLLNLLIAMMS 442 (707)
Q Consensus 424 ~Y~li~~IVLLNLLIAmms 442 (707)
.|..++.|||.|+++||+.
T Consensus 103 LYvaitiiVlfnL~famlv 121 (125)
T COG4272 103 LYVAITIIVLFNLFFAMLV 121 (125)
T ss_pred EEEehHHHHHHHHHHHHHh
Confidence 5788999999999999974
No 41
>PRK10845 colicin V production protein; Provisional
Probab=26.24 E-value=6e+02 Score=24.52 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=22.7
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7028 303 HLGPLQIS-LGRMIIDIVKFFFIYTLVLLSFACGL 336 (707)
Q Consensus 303 ~lGpl~is-l~rmi~Di~~Fl~i~~lvl~aFa~~l 336 (707)
.++|+... ...+......|+++|+++++++.+..
T Consensus 47 ~la~~l~~~~~~~~~~~~af~~iFi~v~~~~~i~~ 81 (162)
T PRK10845 47 YLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVN 81 (162)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554433 23556677888988988888887553
No 42
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=25.57 E-value=1.4e+02 Score=21.51 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7028 418 GLLMFGSYSVINVIVLLNL 436 (707)
Q Consensus 418 g~ilf~~Y~li~~IVLLNL 436 (707)
|.+.|++.|+++.++++--
T Consensus 15 ~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6778888887777766543
No 43
>KOG0844|consensus
Probab=24.10 E-value=38 Score=35.74 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHhHHhhhhhhcccHHHHHH
Q psy7028 77 RRLMKNFQLTPVVTAEDEVELE 98 (707)
Q Consensus 77 ~p~~~a~~L~~la~~E~E~y~~ 98 (707)
+---|||-=.+++++|||||+|
T Consensus 182 RRYRTAFTReQIaRLEKEFyrE 203 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRE 203 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 4456888888999999999876
No 44
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.45 E-value=4.5e+02 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=17.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q psy7028 220 YRYLKDMWNFIDFTRNLLYVLVFM 243 (707)
Q Consensus 220 ~~Yf~d~WN~lD~v~i~L~i~~~~ 243 (707)
|.+|+..|-++|+++..+..+.+.
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~ 27 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFIN 27 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999765555444433
No 45
>KOG4214|consensus
Probab=20.73 E-value=1e+02 Score=27.36 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=27.2
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
.---++||+..|+-..+.+.+++|+.+|.+-
T Consensus 63 kDKygITPLLsAvwEGH~~cVklLL~~GAdr 93 (117)
T KOG4214|consen 63 KDKYGITPLLSAVWEGHRDCVKLLLQNGADR 93 (117)
T ss_pred ccccCCcHHHHHHHHhhHHHHHHHHHcCccc
Confidence 3445899999999999999999999999854
No 46
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=20.32 E-value=1.1e+02 Score=23.08 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=19.0
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHH
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILL 527 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~ 527 (707)
....+.||+-.|+..++++++++|+
T Consensus 30 ~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 30 QDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHccCHHHHHHHC
Confidence 4677999999999999999999985
Done!