Query psy7028
Match_columns 707
No_of_seqs 395 out of 1506
Neff 7.3
Searched_HMMs 29240
Date Sat Aug 17 00:55:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxw_A Navrh, ION transport pr 99.6 6.3E-15 2.2E-19 149.7 13.1 186 193-450 42-228 (229)
2 3rvy_A ION transport protein; 99.5 2.6E-14 9E-19 149.9 11.7 186 192-453 60-247 (285)
3 2r9r_B Paddle chimera voltage 98.9 2.5E-08 8.5E-13 112.8 17.8 193 192-451 238-434 (514)
4 4f4l_A ION transport protein; 98.7 1.5E-08 5.2E-13 90.9 5.8 103 316-454 4-106 (112)
5 3beh_A MLL3241 protein; transm 98.1 2E-05 6.9E-10 84.6 14.5 180 194-451 40-220 (355)
6 1orq_C Potassium channel; volt 97.7 0.0044 1.5E-07 61.7 21.2 48 192-241 38-86 (223)
7 1ors_C Potassium channel; volt 93.9 0.044 1.5E-06 50.0 4.3 92 193-318 37-129 (132)
8 2ih3_C Voltage-gated potassium 85.0 9.8 0.00034 33.6 11.7 34 417-451 87-120 (122)
9 2kav_A Sodium channel protein 84.8 0.11 3.7E-06 47.1 -1.5 21 433-453 14-34 (129)
10 2a9h_A Voltage-gated potassium 84.1 6.8 0.00023 36.4 10.6 33 417-450 110-142 (155)
11 2r9r_B Paddle chimera voltage 81.6 12 0.0004 41.8 13.2 26 223-248 237-262 (514)
12 2kyh_A KVAP, voltage-gated pot 71.6 10 0.00035 34.9 7.5 43 195-239 54-97 (147)
13 1ors_C Potassium channel; volt 65.6 45 0.0015 29.6 10.5 26 223-248 35-60 (132)
14 3rvy_A ION transport protein; 49.2 98 0.0034 30.9 11.0 90 222-323 58-150 (285)
15 4gpm_A Engineered protein OR26 47.9 9.9 0.00034 35.3 2.9 35 503-537 132-166 (169)
16 1n0q_A 3ANK, 3 ankyrin repeats 44.8 24 0.00083 28.2 4.6 34 503-536 31-64 (93)
17 4dxw_A Navrh, ION transport pr 42.5 15 0.00053 35.8 3.5 77 223-309 40-121 (229)
18 1n0q_A 3ANK, 3 ankyrin repeats 41.1 23 0.00078 28.4 3.8 30 507-536 2-31 (93)
19 4h33_A LMO2059 protein; bilaye 40.6 1.8E+02 0.0061 25.8 10.1 33 416-449 68-100 (137)
20 3eff_K Voltage-gated potassium 40.4 1.8E+02 0.0062 25.6 10.2 32 417-449 66-97 (139)
21 2k1e_A Water soluble analogue 35.8 1.1E+02 0.0036 25.8 7.4 34 418-452 67-100 (103)
22 2zgd_A 3 repeat synthetic anky 34.8 39 0.0013 28.1 4.4 34 503-536 53-86 (110)
23 3g9r_A Fusion complex of HIV-1 32.7 47 0.0016 23.1 3.5 20 223-242 5-24 (42)
24 4gpm_A Engineered protein OR26 32.2 39 0.0014 31.0 4.3 29 505-533 68-96 (169)
25 3aaa_C Myotrophin, protein V-1 31.3 44 0.0015 28.1 4.2 31 504-534 37-67 (123)
26 3aaa_C Myotrophin, protein V-1 30.4 49 0.0017 27.8 4.4 33 503-535 69-101 (123)
27 3beh_A MLL3241 protein; transm 28.8 71 0.0024 33.1 6.1 21 226-246 40-60 (355)
28 1bd8_A P19INK4D CDK4/6 inhibit 26.5 58 0.002 28.5 4.3 31 504-534 65-95 (156)
29 2jab_A H10-2-G3; HER2, darpin, 26.3 65 0.0022 27.6 4.5 32 503-534 43-74 (136)
30 1d9s_A Cyclin-dependent kinase 26.3 75 0.0026 27.2 4.9 34 503-536 8-41 (136)
31 1bi7_B P16INK4A, MTS1, multipl 26.1 68 0.0023 28.3 4.7 35 503-537 8-42 (156)
32 2jab_A H10-2-G3; HER2, darpin, 25.7 66 0.0022 27.6 4.4 32 504-535 77-108 (136)
33 1n0r_A 4ANK, 4 ankyrin repeats 25.7 67 0.0023 26.5 4.4 30 505-534 66-95 (126)
34 3twr_A Tankyrase-2; ankyrin re 25.3 86 0.0029 27.7 5.3 35 503-537 104-138 (165)
35 2l6b_A NR1C; ankyrin, consensu 24.9 71 0.0024 26.3 4.4 29 505-533 7-35 (115)
36 1d9s_A Cyclin-dependent kinase 24.5 73 0.0025 27.3 4.5 30 507-536 78-107 (136)
37 1awc_B Protein (GA binding pro 24.5 68 0.0023 28.0 4.4 34 503-536 96-129 (153)
38 4g8k_A 2-5A-dependent ribonucl 24.5 42 0.0014 34.0 3.3 31 503-533 269-299 (337)
39 3c5r_A BARD-1, BRCA1-associate 23.6 70 0.0024 27.3 4.2 34 504-537 73-106 (137)
40 1awc_B Protein (GA binding pro 23.3 72 0.0025 27.9 4.3 31 504-534 64-94 (153)
41 3c5r_A BARD-1, BRCA1-associate 23.3 76 0.0026 27.1 4.4 30 505-534 8-37 (137)
42 1n0r_A 4ANK, 4 ankyrin repeats 22.7 75 0.0026 26.2 4.1 32 503-534 31-62 (126)
43 4b93_B Ankyrin repeat domain-c 22.4 90 0.0031 30.8 5.2 34 503-536 181-214 (269)
44 3hra_A Ankyrin repeat family p 22.2 81 0.0028 28.8 4.6 34 503-536 35-68 (201)
45 3twr_A Tankyrase-2; ankyrin re 21.9 86 0.0029 27.6 4.6 34 503-536 38-71 (165)
46 2l6b_A NR1C; ankyrin, consensu 21.7 56 0.0019 27.0 3.1 33 503-535 38-70 (115)
47 1ihb_A P18-INK4C(INK6), cyclin 21.7 55 0.0019 28.8 3.1 30 503-532 133-162 (162)
48 3v30_A DNA-binding protein rfx 21.6 82 0.0028 28.0 4.4 48 493-540 18-69 (172)
49 4g8k_A 2-5A-dependent ribonucl 21.3 71 0.0024 32.2 4.3 32 505-536 57-88 (337)
50 3vou_A ION transport 2 domain 20.9 4.4E+02 0.015 23.3 9.7 27 416-443 77-103 (148)
51 2pnn_A Transient receptor pote 20.6 38 0.0013 33.1 2.0 36 503-538 229-264 (273)
52 3f6q_A Integrin-linked protein 20.5 89 0.003 28.1 4.4 26 507-532 72-97 (179)
53 3v31_A Ankyrin repeat family A 20.3 91 0.0031 27.5 4.4 33 503-535 98-130 (167)
No 1
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.59 E-value=6.3e-15 Score=149.67 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDG-LYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWN 271 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G-~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~ 271 (707)
.+++++-.+++..|..|-+.+++..| .++|+++.||++|++.+..+++.....
T Consensus 42 ~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~~~~-------------------------- 95 (229)
T 4dxw_A 42 ETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNN-------------------------- 95 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHTTCC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhcCcc--------------------------
Confidence 46777778888899999999999875 579999999999998877655422100
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy7028 272 AFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDC 351 (707)
Q Consensus 272 ~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c 351 (707)
....+..++..+|++++.+.++.+..+..++.+..+++..++++++++++.||+...+++.
T Consensus 96 ---------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~---------- 156 (229)
T 4dxw_A 96 ---------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFG---------- 156 (229)
T ss_dssp -------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 0111223466788889999999999999999999999999999999999999976666541
Q ss_pred ccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHH
Q psy7028 352 YSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVI 431 (707)
Q Consensus 352 ~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~I 431 (707)
..+| .+|+|+++|+.++|..+.|+...+... +.... ..++.++|++|++++++
T Consensus 157 --------~~~~----------------~~F~~~~~a~~~lf~~~t~~~w~~i~~-~~~~~--~~~~~~~f~~~~~i~~~ 209 (229)
T 4dxw_A 157 --------NDDP----------------SRWGDLGISLITLFQVLTLSSWETVML-PMQEI--YWWSWVYFFSFIIICSI 209 (229)
T ss_dssp --------TTSC----------------TTTSSHHHHHHHHHHHHTTSSTHHHHH-HHHTT--CTTHHHHHHHHHHHHHH
T ss_pred --------cCCc----------------ccccCHHHHHHHHHHHHccCCHHHHHH-HHHHh--CCcHHHHHHHHHHHHHH
Confidence 1111 479999999999999999974422211 11111 12688999999999999
Q ss_pred HHHHHHHHHHHhhHHhhhh
Q psy7028 432 VLLNLLIAMMSNSYAMIEV 450 (707)
Q Consensus 432 VLLNLLIAmms~sy~~V~~ 450 (707)
+++||+||++.++|++.++
T Consensus 210 i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 210 TILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 2
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.52 E-value=2.6e-14 Score=149.91 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=140.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC
Q psy7028 192 PSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWN 271 (707)
Q Consensus 192 ~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~ 271 (707)
..+++++-.++++.|++|.+.+++..| ++|+++.||++|+++++.+++...
T Consensus 60 ~~~l~~~e~~~~~iF~~E~~lrl~~~~-~~y~~~~wn~~Dl~~v~~~~i~~~---------------------------- 110 (285)
T 3rvy_A 60 GVYTTLFNQIVITIFTIEIILRIYVHR-ISFFKDPWSLFDFFVVAISLVPTS---------------------------- 110 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGGGCHHHHHHHHHHHHHHSCSS----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHcCChHHhHHHHHHHHHHccc----------------------------
Confidence 356778888888999999999999999 589999999999998766543210
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q psy7028 272 AFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDC 351 (707)
Q Consensus 272 ~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c 351 (707)
..+++..++..+|++++++.++.+..+..++.+..+++..++++++++++.||+...++|. +
T Consensus 111 ---------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~---~------ 172 (285)
T 3rvy_A 111 ---------SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFG---E------ 172 (285)
T ss_dssp ---------SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHT---T------
T ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---c------
Confidence 0122345677888888899999999999999999999999999999999999977666541 1
Q ss_pred ccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCC-Ccc-cccCCccchhHHHHHHHHHHHHHH
Q psy7028 352 YSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGT-DKF-ELKGIKSYTRFWGLLMFGSYSVIN 429 (707)
Q Consensus 352 ~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~-~~~-~~~~~~~~~~~~g~ilf~~Y~li~ 429 (707)
. ...+|+|+++|+.++|..+.|.... |.. +.. ....+|.++|++|++++
T Consensus 173 ---------~----------------~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~----~~~~~~~~~f~~~~~i~ 223 (285)
T 3rvy_A 173 ---------R----------------FPEWFGTLGESFYTLFQVMTLESWSMGIVRPLM----EVYPYAWVFFIPFIFVV 223 (285)
T ss_dssp ---------T----------------CHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHH----TTCTTTHHHHHHHHHHH
T ss_pred ---------c----------------cccccCCHHHHHHHHHHHHHhCCCcHHHHHHHH----HcCChHHhhHHHHHHHH
Confidence 0 0146999999999999999887443 332 111 11235778999999999
Q ss_pred HHHHHHHHHHHHHhhHHhhhhccc
Q psy7028 430 VIVLLNLLIAMMSNSYAMIEVGVE 453 (707)
Q Consensus 430 ~IVLLNLLIAmms~sy~~V~~~sd 453 (707)
.++++||++|++.++|++..++.+
T Consensus 224 ~~~~lnl~~aii~~~f~~~~~~~~ 247 (285)
T 3rvy_A 224 TFVMINLVVAICVDAMAILNQKEE 247 (285)
T ss_dssp HHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877644
No 3
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.89 E-value=2.5e-08 Score=112.77 Aligned_cols=193 Identities=13% Similarity=0.212 Sum_probs=118.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q psy7028 192 PSYLEYLVLLYVAGYIWEETCEVWKDGLY-RYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHW 270 (707)
Q Consensus 192 ~s~~E~ll~i~v~~~l~~Ei~ql~~~G~~-~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W 270 (707)
..++.++-+++++.|++|-+.+++..|.+ .|++++||++|+++++.+++.+.+.... .
T Consensus 238 ~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~-----------~---------- 296 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESN-----------K---------- 296 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTS-----------C----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhcc-----------c----------
Confidence 45667777778888999999999988754 8999999999999988777655432100 0
Q ss_pred CcCChHHHHHHHHHHHHHHHHHHHHhhhhccCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy7028 271 NAFDPQLIAEGLFAGANVFSALKLVHLFSINPH---LGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELE 347 (707)
Q Consensus 271 ~~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~---lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~ 347 (707)
..... ..++.+..++..+|++++++..++ +..+..++.+.++.+..++++++++++.||..+. +...
T Consensus 297 ---~~~~~-~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~-----~~e~- 366 (514)
T 2r9r_B 297 ---SVLQF-QNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVY-----FAEA- 366 (514)
T ss_dssp ---SHHHH-HTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-----HHHT-
T ss_pred ---cchhh-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----eeec-
Confidence 00000 011223333444444444444333 4455556666777777666666666777775432 1110
Q ss_pred hcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHH
Q psy7028 348 RKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSV 427 (707)
Q Consensus 348 ~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~l 427 (707)
.. ....|.++.+|+...+..+.+. ++.++.. ....|. +|+++.+
T Consensus 367 ---------------~~-------------~~~~F~s~~~a~y~~~vT~TTv-GYGDi~P------~t~~gr-~f~~~~~ 410 (514)
T 2r9r_B 367 ---------------DE-------------RDSQFPSIPDAFWWAVVSMTTV-GYGDMVP------TTIGGK-IVGSLCA 410 (514)
T ss_dssp ---------------TC-------------TTCSCSSHHHHHHHHHHHHTTC-CCSSSCC------CSHHHH-HHHHHHH
T ss_pred ---------------cC-------------CCccccchhhhhheeeeEEEec-ccCCCCC------CCcchH-hhehhHH
Confidence 00 0146788888876666555432 2233221 123455 4667777
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhhc
Q psy7028 428 INVIVLLNLLIAMMSNSYAMIEVG 451 (707)
Q Consensus 428 i~~IVLLNLLIAmms~sy~~V~~~ 451 (707)
+..++++|++||++.+.|+...+.
T Consensus 411 l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 411 IAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987654
No 4
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.69 E-value=1.5e-08 Score=90.95 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHH
Q psy7028 316 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWA 395 (707)
Q Consensus 316 ~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~ 395 (707)
..+...+++++++++.||+...++|. + . ...+|+++..|+.++|..
T Consensus 4 ~g~~nv~~ll~l~~~ifAi~G~~lFg---~---------------~----------------~~~~F~~~~~s~ltLF~i 49 (112)
T 4f4l_A 4 MGVGSVAALLTVVFYIAAVMATNLYG---A---------------T----------------FPEWFGDLSKSLYTLFQV 49 (112)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHT---T---------------T----------------CHHHHSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHC---C---------------C----------------ccccccCHHHHHHHHHHH
Confidence 34667788889999999987778762 1 0 014799999999999999
Q ss_pred HcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcccc
Q psy7028 396 SFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEI 454 (707)
Q Consensus 396 lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~sd~ 454 (707)
+.|+--.+....+.. . ...++.++|++|+++++.+++||+||++.++|++.+++.+.
T Consensus 50 ~T~e~W~~~~~~~~~-~-~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~~~~~ 106 (112)
T 4f4l_A 50 MTLESWSMGIVRPVM-N-VHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQEEE 106 (112)
T ss_dssp HTTTTCCCCCHHHHT-T-TSTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred HHccccHHHHHHHHH-h-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999744332211111 1 12356789999999999999999999999999999877654
No 5
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.14 E-value=2e-05 Score=84.60 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCc
Q psy7028 194 YLEYLVLLYVAGYIWEETCEVWKDGLY-RYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNA 272 (707)
Q Consensus 194 ~~E~ll~i~v~~~l~~Ei~ql~~~G~~-~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~ 272 (707)
.++++..+..+.|++|-+..++..+.+ .|+++.||++|++++++-+.... .. +.
T Consensus 40 ~~~~~~~~~~~~f~~e~~~r~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~~---~~-----------------~~----- 94 (355)
T 3beh_A 40 ALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFL---LD-----------------GS----- 94 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSCSSCCCHHHHHHHHHHHHHHHHHHH---SC-----------------CS-----
T ss_pred HHHHHHhHHHHHHHHHHHHhcccccccceeccCcchHHHHHHHHHHHHHHH---hc-----------------cc-----
Confidence 456654444445777777776655433 47889999999998743222110 00 00
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q psy7028 273 FDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCY 352 (707)
Q Consensus 273 ~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di~~Fl~i~~lvl~aFa~~l~~Ly~~y~~~~~~~c~ 352 (707)
....++..+|++++.+..+.+..+...+.+....+..++++++++++.||+++..+..
T Consensus 95 -----------~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~----------- 152 (355)
T 3beh_A 95 -----------PDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIER----------- 152 (355)
T ss_dssp -----------GGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------
Confidence 0012244567777777777777777777777788888888888888888877643310
Q ss_pred cccccCCcCCCCCCCCcccchhhhccccccchhHHhHHHHHHHHcCCCCCCcccccCCccchhHHHHHHHHHHHHHHHHH
Q psy7028 353 STMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIV 432 (707)
Q Consensus 353 ~~~~~~g~l~p~~~~~~~~~~~~c~~~~~F~~~~~S~~tLf~~lfG~~~~~~~~~~~~~~~~~~~g~ilf~~Y~li~~IV 432 (707)
.. ....|+++.+|+...+-.+. -++++++.+ ....|.+ ++++..+..++
T Consensus 153 -------~~----------------~~~~f~~~~~s~y~~~~t~t-tvGygd~~p------~t~~~~~-~~~~~~~~g~~ 201 (355)
T 3beh_A 153 -------DI----------------QPEKFGSIPQAMWWAVVTLS-TTGYGDTIP------QSFAGRV-LAGAVMMSGIG 201 (355)
T ss_dssp -------TT----------------CHHHHSSHHHHHHHHHHHHT-TCCCSSSCC------CSHHHHH-HHHHHHHHHHH
T ss_pred -------CC----------------CCcccccHHHHHHHHHhhee-ecCCCCCCC------CChhHHH-HHHHHHHHHHH
Confidence 00 01356677666443333332 122222221 1235654 45566667789
Q ss_pred HHHHHHHHHHhhHHhhhhc
Q psy7028 433 LLNLLIAMMSNSYAMIEVG 451 (707)
Q Consensus 433 LLNLLIAmms~sy~~V~~~ 451 (707)
++|++|+.+.+.|++..++
T Consensus 202 ~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 202 IFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875543
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.67 E-value=0.0044 Score=61.67 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHHHH
Q psy7028 192 PSYLEYLVLLYVAGYIWEETCEVWKDG-LYRYLKDMWNFIDFTRNLLYVLV 241 (707)
Q Consensus 192 ~s~~E~ll~i~v~~~l~~Ei~ql~~~G-~~~Yf~d~WN~lD~v~i~L~i~~ 241 (707)
..+.+++-.+..+.|+.|=+.+++..+ .++|+++ |++|+++++-+...
T Consensus 38 ~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y~~~--~iiDllailP~~~~ 86 (223)
T 1orq_C 38 LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLL 86 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH--hHHHHHHHHHHHHH
Confidence 345566666667778888887787653 3588887 99999887665543
No 7
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=93.91 E-value=0.044 Score=49.99 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC
Q psy7028 193 SYLEYLVLLYVAGYIWEETCEVWKDG-LYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWN 271 (707)
Q Consensus 193 s~~E~ll~i~v~~~l~~Ei~ql~~~G-~~~Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~ 271 (707)
..++++-.+.+..|..|-+.+++..+ .++|++ ||++|+++++-+...+.+ - ...
T Consensus 37 ~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~--~niiDllailp~~~~~~~-~-~~l--------------------- 91 (132)
T 1ors_C 37 VRLYLVDLILVIILWADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLALI-E-GHL--------------------- 91 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHHHH-H-HHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHh-c-chH---------------------
Confidence 45666667777888888888888753 457888 999999877655544432 0 100
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHH
Q psy7028 272 AFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMIIDI 318 (707)
Q Consensus 272 ~~dp~lia~~l~ai~~vl~~lRll~ll~~~~~lGpl~isl~rmi~Di 318 (707)
..+.+.-++..+|++++.+..+.++.+..++.+..+++
T Consensus 92 ---------~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l 129 (132)
T 1ors_C 92 ---------AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp ---------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 01122334455666666777777888888887777665
No 8
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=85.01 E-value=9.8 Score=33.63 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhc
Q psy7028 417 WGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVG 451 (707)
Q Consensus 417 ~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~ 451 (707)
.|.++.+.+++ ..++++-+.++.+.+.+++..++
T Consensus 87 ~gr~~~~~~~~-~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 87 WGRLVAVVVMV-AGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46655544444 44556778888888888776543
No 9
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=84.77 E-value=0.11 Score=47.12 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhHHhhhhccc
Q psy7028 433 LLNLLIAMMSNSYAMIEVGVE 453 (707)
Q Consensus 433 LLNLLIAmms~sy~~V~~~sd 453 (707)
||||+||++.+.|+.+.++++
T Consensus 14 ~LNLfIAVIlenF~~~~~~~~ 34 (129)
T 2kav_A 14 LVPRGSHMASENFSVATEESA 34 (129)
T ss_dssp ----------CCSCCTTSSCS
T ss_pred hhheeeeeeeccHHHHHHhhc
Confidence 699999999999999988765
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=84.13 E-value=6.8 Score=36.36 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy7028 417 WGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEV 450 (707)
Q Consensus 417 ~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~ 450 (707)
.|.++.+++++ ..++++-+.++.+.+.+.+...
T Consensus 110 ~gr~~~~~~~l-~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 110 WGRCVAVVVMV-AGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 56665555444 4455677788888877776543
No 11
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=81.64 E-value=12 Score=41.80 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy7028 223 LKDMWNFIDFTRNLLYVLVFMLRAMA 248 (707)
Q Consensus 223 f~d~WN~lD~v~i~L~i~~~~lr~~~ 248 (707)
+.+.|.++|.+..++|.+-+++|+.+
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR~~~ 262 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVRFFA 262 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 12
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=71.61 E-value=10 Score=34.86 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHhhhHHHHHHHHHHHH
Q psy7028 195 LEYLVLLYVAGYIWEETCEVWKDG-LYRYLKDMWNFIDFTRNLLYV 239 (707)
Q Consensus 195 ~E~ll~i~v~~~l~~Ei~ql~~~G-~~~Yf~d~WN~lD~v~i~L~i 239 (707)
.+++-.+.++.|+.|=+..++..+ .++|+++ |++|+++++-+.
T Consensus 54 ~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~ 97 (147)
T 2kyh_A 54 LYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAG 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHH
Confidence 444444444556666666666543 3578886 999988665443
No 13
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=65.64 E-value=45 Score=29.64 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=22.5
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy7028 223 LKDMWNFIDFTRNLLYVLVFMLRAMA 248 (707)
Q Consensus 223 f~d~WN~lD~v~i~L~i~~~~lr~~~ 248 (707)
..+.+.++|.+..++|.+-+.+|+.+
T Consensus 35 ~~~~l~~~d~~~~~iFt~E~~lRl~~ 60 (132)
T 1ors_C 35 YLVRLYLVDLILVIILWADYAYRAYK 60 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999876
No 14
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=49.20 E-value=98 Score=30.93 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHHH---HHHHHHHHHhhh
Q psy7028 222 YLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGA---NVFSALKLVHLF 298 (707)
Q Consensus 222 Yf~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai~---~vl~~lRll~ll 298 (707)
.......++|.+..++|.+-+++|+.+.- ...-+..|+-+|-..+.-.+.... .++..+|+++++
T Consensus 58 ~~~~~l~~~e~~~~~iF~~E~~lrl~~~~------------~~y~~~~wn~~Dl~~v~~~~i~~~~~~~~lr~~RilR~l 125 (285)
T 3rvy_A 58 SFGVYTTLFNQIVITIFTIEIILRIYVHR------------ISFFKDPWSLFDFFVVAISLVPTSSGFEILRVLRVLRLF 125 (285)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHTTG------------GGGGGCHHHHHHHHHHHHHHSCSSSSCTHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHcCChHHhHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34456788999999999999999987621 112345566555433321211111 234444455555
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHH
Q psy7028 299 SINPHLGPLQISLGRMIIDIVKFFF 323 (707)
Q Consensus 299 ~~~~~lGpl~isl~rmi~Di~~Fl~ 323 (707)
+..+....+...+..+...+-.++.
T Consensus 126 rl~~~~~~l~~l~~~l~~~~~~l~~ 150 (285)
T 3rvy_A 126 RLVTAVPQMRKIVSALISVIPGMLS 150 (285)
T ss_dssp HHHHSSTTHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444433344444333
No 15
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=47.92 E-value=9.9 Score=35.25 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMPH 537 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph 537 (707)
....+.||+..|+..++.+++++|+++|.++..-|
T Consensus 132 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~~~ 166 (169)
T 4gpm_A 132 SDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEHHH 166 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHTC--------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCCCC
Confidence 44567788888888888888888888888876544
No 16
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=44.76 E-value=24 Score=28.25 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=28.1
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+-||+..|+..++.+++++|+++|.++...
T Consensus 31 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 64 (93)
T 1n0q_A 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence 4456789999999999999999999998876443
No 17
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=42.54 E-value=15 Score=35.76 Aligned_cols=77 Identities=16% Similarity=0.348 Sum_probs=39.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcCChHHHHHHHHHH--H---HHHHHHHHHhh
Q psy7028 223 LKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAG--A---NVFSALKLVHL 297 (707)
Q Consensus 223 f~d~WN~lD~v~i~L~i~~~~lr~~~~~~~~~~~~~~p~~~~~~r~~W~~~dp~lia~~l~ai--~---~vl~~lRll~l 297 (707)
..+..+++|.+...+|.+-..+|+.+.- .....-+..|+-+|-..+.-.+... . .++..+|+++.
T Consensus 40 ~~~~l~~~e~~~~~iF~~E~~lri~~~~----------~~~~y~~~~wni~D~~~v~~~~i~~~~~~~~~~lr~~RilR~ 109 (229)
T 4dxw_A 40 FLETIHLLDYGITIFFVIEILIRFIGEK----------QKADFFKSGWNIFDTVIVAISLIPIPNNSSFLVLRLLRIFRV 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHTTCC--------CCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----------chhHHhcCCcHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHH
Confidence 3456678899999999999999987631 1111235567767654332221111 1 12244555555
Q ss_pred hhccCcchHHHH
Q psy7028 298 FSINPHLGPLQI 309 (707)
Q Consensus 298 l~~~~~lGpl~i 309 (707)
++..+....+..
T Consensus 110 lrl~~~~~~l~~ 121 (229)
T 4dxw_A 110 LRLISVIPELKQ 121 (229)
T ss_dssp TTHHHHCHHHHH
T ss_pred HHHHHHhHHHHH
Confidence 555555444433
No 18
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=41.11 E-value=23 Score=28.40 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=25.4
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
+-||+..|+..++.++++.|+++|.++...
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~ 31 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK 31 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 568999999999999999999999876433
No 19
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=40.59 E-value=1.8e+02 Score=25.82 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy7028 416 FWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449 (707)
Q Consensus 416 ~~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~ 449 (707)
..|.++-++++++ .+.++-++++.+++.|..-.
T Consensus 68 ~~gr~~~~~~~~~-g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 68 PIGRILASIMMLF-GIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTTTT
T ss_pred HhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3566665555554 45677888899888776533
No 20
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=40.43 E-value=1.8e+02 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy7028 417 WGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449 (707)
Q Consensus 417 ~g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~ 449 (707)
.|.++.++++ +..++++-++++.+.+.+.+-.
T Consensus 66 ~~r~~~~~~~-~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 66 WGRLVAVVVM-VAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4665555554 4455667788888877765443
No 21
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=35.75 E-value=1.1e+02 Score=25.79 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhcc
Q psy7028 418 GLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGV 452 (707)
Q Consensus 418 g~ilf~~Y~li~~IVLLNLLIAmms~sy~~V~~~s 452 (707)
|.++.+++ .+..++++-+.++.+.+.+.+-.++.
T Consensus 67 gr~~~~~~-~l~G~~~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2k1e_A 67 GRKVAEQV-MKAGIEVFALVTAALATDFVRREEER 100 (103)
T ss_dssp CTHHHHHH-HHHHHHHHHHTHHHHHTTGGGHHHHT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33343333 44445567777888887777665543
No 22
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=34.76 E-value=39 Score=28.11 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.5
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+-+|+..|+..++.+++++|+++|.++...
T Consensus 53 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~ 86 (110)
T 2zgd_A 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86 (110)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 4466789999999999999999999999876443
No 23
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=32.73 E-value=47 Score=23.10 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=15.2
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q psy7028 223 LKDMWNFIDFTRNLLYVLVF 242 (707)
Q Consensus 223 f~d~WN~lD~v~i~L~i~~~ 242 (707)
.++.|||+|+.--+-|+-.+
T Consensus 5 Wa~lWnWFdItkWlwyIKI~ 24 (42)
T 3g9r_A 5 WASLWNWFNITNWLWYIKIE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 57899999998777666443
No 24
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=32.15 E-value=39 Score=31.00 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=19.0
Q ss_pred cCChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 505 TKDITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 505 ~~dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
..+.||+..|+..++.+++++|+++|.++
T Consensus 68 ~~g~TpLh~A~~~g~~~~v~~Ll~~gadv 96 (169)
T 4gpm_A 68 SDGRTPLHHAAENGHKEVVKLLISKGADV 96 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 44556677777777777777777666554
No 25
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=31.30 E-value=44 Score=28.13 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=21.9
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
...+-+|+..|+..++.+++++|+++|.++.
T Consensus 37 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 67 (123)
T 3aaa_C 37 LEGGRKPLHYAADCGQLEILEFLLLKGADIN 67 (123)
T ss_dssp CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 3456677777777777777777777776553
No 26
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=30.38 E-value=49 Score=27.84 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=28.2
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
....+-||+..|+..++.+++++|+++|.++..
T Consensus 69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 101 (123)
T 3aaa_C 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101 (123)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 345678999999999999999999999987643
No 27
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=28.77 E-value=71 Score=33.07 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy7028 226 MWNFIDFTRNLLYVLVFMLRA 246 (707)
Q Consensus 226 ~WN~lD~v~i~L~i~~~~lr~ 246 (707)
..+++|.+....|++-+.+|+
T Consensus 40 ~~~~~~~~~~~~f~~e~~~r~ 60 (355)
T 3beh_A 40 ALAALLAVIWGAYLLQLAATL 60 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhc
Confidence 345555555555555555554
No 28
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.52 E-value=58 Score=28.46 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=24.2
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
...+.+|+..|+..++.+++++|+++|.++.
T Consensus 65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 95 (156)
T 1bd8_A 65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95 (156)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 3556788888888888888888888886653
No 29
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=26.31 E-value=65 Score=27.64 Aligned_cols=32 Identities=34% Similarity=0.511 Sum_probs=25.4
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
....+.+|+..|+..++.+++++|+++|.++.
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 74 (136)
T 2jab_A 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74 (136)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 34557788899998889999998888887653
No 30
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=26.25 E-value=75 Score=27.22 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+.+|+..|+..++.++++.|+++|.++...
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 41 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNAL 41 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc
Confidence 4567789999999999999999999999876544
No 31
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=26.14 E-value=68 Score=28.29 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMPH 537 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph 537 (707)
..+++-+|+..|+..++.++++.|+++|..+....
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 42 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPN 42 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 45677899999999999999999999998775443
No 32
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=25.66 E-value=66 Score=27.60 Aligned_cols=32 Identities=38% Similarity=0.461 Sum_probs=27.1
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
...+.+|+..|+..++.+++++|+++|.++..
T Consensus 77 d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 108 (136)
T 2jab_A 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108 (136)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcC
Confidence 45678999999999999999999999877643
No 33
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=25.65 E-value=67 Score=26.51 Aligned_cols=30 Identities=40% Similarity=0.631 Sum_probs=21.8
Q ss_pred cCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 505 TKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 505 ~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
..+.+|+..|+..++.+++++|+++|.++.
T Consensus 66 ~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~ 95 (126)
T 1n0r_A 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVN 95 (126)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCcHHHHHHHcChHHHHHHHHHcCCCCc
Confidence 445677778887778888888877776653
No 34
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=25.32 E-value=86 Score=27.66 Aligned_cols=35 Identities=40% Similarity=0.424 Sum_probs=29.1
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMPH 537 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph 537 (707)
....+.||+..|+..++.+++++|+++|.++....
T Consensus 104 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 138 (165)
T 3twr_A 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138 (165)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 34567899999999999999999999998775443
No 35
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=24.89 E-value=71 Score=26.32 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=18.2
Q ss_pred cCChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 505 TKDITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 505 ~~dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
..+-+|+..|+..++.++++.|+++|..+
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 35 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADV 35 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 34556666666666666666666666554
No 36
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=24.50 E-value=73 Score=27.28 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=26.1
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
+.||+..|+...+.+++++|+++|.++...
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 107 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVC 107 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence 689999999999999999999999776433
No 37
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=24.47 E-value=68 Score=28.05 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+-||+..|+..++.+++++|+++|.++...
T Consensus 96 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 129 (153)
T 1awc_B 96 KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129 (153)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 3456789999999999999999999999876443
No 38
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.46 E-value=42 Score=34.01 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATL 533 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i 533 (707)
....+.||+..|+..++.+++++|+++|.++
T Consensus 269 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~ 299 (337)
T 4g8k_A 269 TDSDGKTALLLAVELKLKKIAELLCKRGAST 299 (337)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 3456778999999999999999999888755
No 39
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=23.57 E-value=70 Score=27.34 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=27.9
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATLPMPH 537 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph 537 (707)
...+.||+..|+..++.+++++|+++|.++....
T Consensus 73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 3456799999999999999999999998775443
No 40
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=23.32 E-value=72 Score=27.88 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=22.5
Q ss_pred CcCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 504 FTKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 504 ~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
...+.+|+..|+...+.+++++|+++|.++.
T Consensus 64 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 94 (153)
T 1awc_B 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVN 94 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHcCCCCC
Confidence 3456678888888888888888887776553
No 41
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=23.28 E-value=76 Score=27.10 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=21.5
Q ss_pred cCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 505 TKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 505 ~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
..+.+|+..|+..++.++++.|+++|.++.
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 37 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPN 37 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 456677777777777777777777776553
No 42
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=22.74 E-value=75 Score=26.17 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=25.8
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLP 534 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~ 534 (707)
....+.+|+..|+..++.+++++|+++|..+.
T Consensus 31 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 62 (126)
T 1n0r_A 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62 (126)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence 34567889999999999999999998887653
No 43
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=22.39 E-value=90 Score=30.78 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=29.5
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+.||+..|+..++.+++++|+++|.++...
T Consensus 181 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 181 SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred cccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 4567889999999999999999999999877543
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.21 E-value=81 Score=28.75 Aligned_cols=34 Identities=44% Similarity=0.641 Sum_probs=28.3
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+.+|+..|+..++.+++++|+++|.++...
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 68 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 4456789999999999999999999999876543
No 45
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.95 E-value=86 Score=27.64 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
....+.+|+..|+..++.++++.|+++|.++...
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 71 (165)
T 3twr_A 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71 (165)
T ss_dssp TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred cccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc
Confidence 3445668999999999999999999888766433
No 46
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=21.75 E-value=56 Score=26.96 Aligned_cols=33 Identities=39% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
....+.+|+..|+..++.+++++|+++|.++..
T Consensus 38 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~ 70 (115)
T 2l6b_A 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70 (115)
T ss_dssp CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc
Confidence 345667888888888888888888888776543
No 47
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=21.68 E-value=55 Score=28.79 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=24.9
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGAT 532 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~ 532 (707)
....+.||+..|+...+.+++++|+++|.+
T Consensus 133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 133 RNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 445678999999999999999999999863
No 48
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=21.57 E-value=82 Score=28.00 Aligned_cols=48 Identities=27% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhhhhhc----cCCCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCCCC
Q psy7028 493 SWEKVDKN----TSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVR 540 (707)
Q Consensus 493 V~ryv~k~----~~~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~~~ 540 (707)
++..+.+. +.....+.+|+..|+..++.+++++|+++|.++.......
T Consensus 18 v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 69 (172)
T 3v30_A 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69 (172)
T ss_dssp HHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred HHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccC
No 49
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.31 E-value=71 Score=32.22 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=27.8
Q ss_pred cCChHHHHHHHhhChHHHHHHHHhCCCCCCCC
Q psy7028 505 TKDITPLILAAHKNNYEILKILLDRGATLPMP 536 (707)
Q Consensus 505 ~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~p 536 (707)
+.+.||+..|+...+.+++++|+++|..+...
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~ 88 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhhh
Confidence 34789999999999999999999999877543
No 50
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=20.87 E-value=4.4e+02 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7028 416 FWGLLMFGSYSVINVIVLLNLLIAMMSN 443 (707)
Q Consensus 416 ~~g~ilf~~Y~li~~IVLLNLLIAmms~ 443 (707)
..|.++.++|+++...++. +.++.+..
T Consensus 77 ~~~r~~~~~~~~~g~~~~~-~~~~~~~~ 103 (148)
T 3vou_A 77 DFGKVFTILYIFIGIGLVF-GFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3577777777766654433 44444443
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.61 E-value=38 Score=33.08 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPMPHD 538 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ph~ 538 (707)
....+.||+..|+...+.+++++|+++|..-|.+.+
T Consensus 229 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~ 264 (273)
T 2pnn_A 229 TNRKGLTPLALAASSGKIGVLAYILQREIHEPECRH 264 (273)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred cCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence 346688999999999999999999999997655443
No 52
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.51 E-value=89 Score=28.12 Aligned_cols=26 Identities=42% Similarity=0.489 Sum_probs=12.7
Q ss_pred ChHHHHHHHhhChHHHHHHHHhCCCC
Q psy7028 507 DITPLILAAHKNNYEILKILLDRGAT 532 (707)
Q Consensus 507 dl~pl~~a~~~~~~ei~~lL~~~g~~ 532 (707)
+.+|+..|+...+.+++++|+++|.+
T Consensus 72 g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (179)
T 3f6q_A 72 DDTPLHLAASHGHRDIVQKLLQYKAD 97 (179)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 34455555555555555555544443
No 53
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.29 E-value=91 Score=27.54 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=27.5
Q ss_pred CCcCChHHHHHHHhhChHHHHHHHHhCCCCCCC
Q psy7028 503 MFTKDITPLILAAHKNNYEILKILLDRGATLPM 535 (707)
Q Consensus 503 ~~~~dl~pl~~a~~~~~~ei~~lL~~~g~~i~~ 535 (707)
....+.||+..|+..++.+++++|+++|.++..
T Consensus 98 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 345678999999999999999999999877643
Done!