RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7028
(707 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 251 bits (642), Expect = 5e-73
Identities = 110/291 (37%), Positives = 154/291 (52%), Gaps = 37/291 (12%)
Query: 160 LLLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGL 219
L++ S L V GL + LE L++ +V G E +W G+
Sbjct: 365 LIIFTSVAYYRPTRTDLRV---------TGLQQTPLEMLIVTWVDGLRLGEEKLIWLGGI 415
Query: 220 YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIA 279
+ Y+ +WN +DF N Y+ F+ R A + ++ L REHW FDP LI
Sbjct: 416 FEYIHQLWNILDFGMNSFYLATFLDRPFAILF------VTQAFLVL-REHWLRFDPTLIE 468
Query: 280 EGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMII-DIVKFFFIYTLVLLSFACGLNQ 338
E LFA A V S L L+++F N HLGPLQI +GRMI+ DI++F FIY +VL FACGLNQ
Sbjct: 469 EALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQ 528
Query: 339 LLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWASFG 398
L Y+ EL+ +C + + + + +++ LFE+SQ LFWA G
Sbjct: 529 LYQYYDELKLNECSNPHARS----------------CEKQGNAYSTLFETSQELFWAIIG 572
Query: 399 STGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449
D L +T F GLL+FG+Y+VI I+LLN+LIAMM N+Y +I
Sbjct: 573 --LGDL--LANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIA 619
Score = 233 bits (595), Expect = 2e-66
Identities = 94/223 (42%), Positives = 125/223 (56%), Gaps = 9/223 (4%)
Query: 488 GDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCL 547
+ D+ TS FT IT L LAAH+ NYEI+K+LL+RGA++P R D +
Sbjct: 109 RKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP----ARACGDFFV 164
Query: 548 RESNEDSLRHSMSRVNEYRALASPSLIALSSNDP--ILTAFQLSWELRNLAFTEPECRNE 605
+ DS H S +N L SPS++AL S DP ILTA L L +L E E + E
Sbjct: 165 KSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAE 224
Query: 606 YMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPY---EEGEPMKLTRLELAIDYKQK 662
Y EL Q FA+ LL + R ++EL +LNH TP + + L RL+LAI YKQK
Sbjct: 225 YEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQK 284
Query: 663 RFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFP 705
+FVA N QQLL+ W + L G+RRK + +L+ + I L FP
Sbjct: 285 KFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFP 327
Score = 30.8 bits (70), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 467 MPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTK-----DITPLILAAHKNNYE 521
+P +PL+ EEK +L + ERGD A+ + +++ + + L +AA +N
Sbjct: 7 VPAEESPLSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENL 66
Query: 522 ILKILL 527
L LL
Sbjct: 67 ELTELL 72
>gnl|CDD|149414 pfam08344, TRP_2, Transient receptor ion channel II. This domain
is found in the transient receptor ion channel (Trp)
family of proteins. There is strong evidence that Trp
proteins are structural elements of calcium-ion entry
channels activated by G protein-coupled receptors. This
domain does not tend to appear with the TRP domain
(pfam06011) but is often found to the C-terminus of
Ankyrin repeats (pfam00023).
Length = 63
Score = 119 bits (300), Expect = 2e-32
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 541 CGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEP 600
CGCD C R+ DSLRHS+SR+N YRALASP+ I+L+S DPILTAF+LSWELR LAF E
Sbjct: 1 CGCDECSRKRETDSLRHSLSRINAYRALASPAYISLTSEDPILTAFELSWELRRLAFIEQ 60
Query: 601 ECR 603
E +
Sbjct: 61 EFK 63
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 94.3 bits (235), Expect = 4e-22
Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 57/248 (22%)
Query: 197 YLVLLYVAGYIWEETCEVWKDGL-YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAE 255
L ++ + E + G +Y + WN +DF L ++ +L +
Sbjct: 1 ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLG------- 53
Query: 256 IEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMI 315
GL + L+L+ L P L L SLGR +
Sbjct: 54 ----------------------EDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSL 91
Query: 316 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAA 375
++ + L+L FA QL ++
Sbjct: 92 KSLLNLLLLLLLLLFIFAIIGVQLFGG-------------------------ELDKCCDK 126
Query: 376 CSKWRSFNNLFESSQSLFWASFGSTGTDKFE--LKGIKSYTRFWGLLMFGSYSVINVIVL 433
+ N+ F+S F + T+ + + G + F + ++ ++L
Sbjct: 127 NENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVLGKIFFVIFIILGGVLL 186
Query: 434 LNLLIAMM 441
LNLLI ++
Sbjct: 187 LNLLIGVI 194
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 53.9 bits (130), Expect = 2e-07
Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 56/261 (21%)
Query: 194 YLEYLVLL-YVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQ 252
L ++ L +V ++ E ++ ++G RYL+ +WN +D L V+V +L
Sbjct: 209 LLCEIIFLVFVLYFVVAEITKIRREG-PRYLRSVWNLLDLAIVALSVVVIVLHIYRDFLA 267
Query: 253 QAEIEANESSKFLGREHWNAFDP---QLIAEGLFAGANVF-SALKLVHLFSINPHLGPLQ 308
+ E+S + FD + +F + LKL + N +
Sbjct: 268 TQLWKQVEASP----VDFTDFDRVARLDQLYRIILAFLLFLTWLKLFKVLRFNRTMSLFT 323
Query: 309 ISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPN 368
+L R + +++ F ++ ++ L++A QL + + + N
Sbjct: 324 KTLSRALKELLGFAVMFVILFLAYA----QLGY------------LLFGSQVDN------ 361
Query: 369 WEEHDAACSKWRSFNNLFESSQSLF---WASFGSTGTDKFELKGIKSYTRFWGLLMFGSY 425
F+N +S +LF FG T I S R G L+F ++
Sbjct: 362 -------------FSNFVKSILTLFRTLCGDFGYT--------EIFSGNRVLGPLLFLTF 400
Query: 426 SVINVIVLLNLLIAMMSNSYA 446
+ + +LLNL +A++++SY
Sbjct: 401 VFLVIFILLNLFLAIINDSYV 421
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 38.7 bits (91), Expect = 2e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + E++K+LL+ GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA 26
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
TPL LAA N E++K+LLD+GA +
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADI 28
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 36.5 bits (85), Expect = 0.006
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LAA N EI+K+LL+ GA
Sbjct: 63 TALHLAARNGNLEIVKLLLEHGA 85
Score = 35.3 bits (82), Expect = 0.012
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LAA N EI+K+LL+ GA
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGA 52
Score = 31.1 bits (71), Expect = 0.40
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 511 LILAAHKNNYEILKILLDRGA 531
L LAA N E++K+LL++GA
Sbjct: 1 LHLAAKNGNLELVKLLLEKGA 21
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 36.6 bits (85), Expect = 0.008
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + EI+K+LL++GA
Sbjct: 42 TPLHLAAKNGHLEIVKLLLEKGA 64
Score = 35.8 bits (83), Expect = 0.015
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA N +++K+LL GA
Sbjct: 75 TPLHLAARNGNLDVVKLLLKHGA 97
Score = 35.4 bits (82), Expect = 0.023
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCL 547
TPL LAA + E++K+LL+ GA + T L
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGA---DVNAKDNDGRTPL 44
Score = 28.1 bits (63), Expect = 7.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 509 TPLILAAHKNNYEILKILL 527
TPL LAA + E++K+LL
Sbjct: 108 TPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 33.4 bits (77), Expect = 0.014
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
TPL LAA N E++K+LL+ GA +
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 36.8 bits (85), Expect = 0.043
Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 84/311 (27%)
Query: 195 LEYLVLLYVAGYIWEE-----TCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFML----- 244
+E L+ + ++EE + + + Y WN++DF L++ M+
Sbjct: 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFS 1237
Query: 245 --RAMAY-VQQQAEIEAN--ESSKFLGREHWNAFDPQLIAEGLFAGANVFSALK-LVHLF 298
A A+ +I N S+ F N ++F +K LV F
Sbjct: 1238 WSYARAFEPDIHYDIYKNLSASANFTALRIPNELP---------EMNDMFLEMKNLVDYF 1288
Query: 299 S-------IN---------------PHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGL 336
IN P LG + +L D++ FF I+ +V + +A +
Sbjct: 1289 QWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAF-I 1347
Query: 337 NQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESSQSLFWAS 396
+++ + +S M+ S N+LFE+
Sbjct: 1348 GHVIFGNASVH----FSDMTD-----------------------SINSLFENL------- 1373
Query: 397 FGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEG 456
G +LK + G++ F SY++ ++L N L+A++ +++ EV
Sbjct: 1374 LGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFG--EVKANAAE 1431
Query: 457 PGIVHTQPFDM 467
VHT+ F M
Sbjct: 1432 TVSVHTELFPM 1442
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 31.2 bits (71), Expect = 0.17
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA E+++ LL G
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGV 40
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 34.3 bits (79), Expect = 0.25
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 505 TKDI---TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCL 547
KD+ TPL A + NN E +K LLD GA P+ V DT L
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN---PNLVNKYGDTPL 229
Score = 30.4 bits (69), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 506 KDITPLILAA--HKNNYEILKILLDRGA 531
ITPL+ A N+Y I++ LLD GA
Sbjct: 105 NGITPLLYAISKKSNSYSIVEYLLDNGA 132
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 33.4 bits (76), Expect = 0.38
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 484 SVERGDTATSWEKVDKNT----SMFTKDITPLILAAHKNNYEILKILLDRGATLPMP 536
+VE GD E +D + +TPL LA +I+K+L+ RGA +P
Sbjct: 75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131
Score = 30.3 bits (68), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPLI+A K + I K+LLD GA
Sbjct: 170 TPLIIAMAKGDIAICKMLLDSGA 192
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional.
Length = 247
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 192 PSYLEYLVLLYVAGY-------IWEETCEVWKDGLYRYLKDMWN 228
P YL +V+LY AG IW+E C+ W+ G+ + +W+
Sbjct: 159 PDYLA-IVMLYQAGQNDILAVEIWQEDCKEWR-GMRKAYGAVWD 200
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 509 TPLILAAHKNNYEILKILL 527
T L +AA N E+LK+LL
Sbjct: 36 TALHIAAENGNLEVLKLLL 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,589,172
Number of extensions: 3644900
Number of successful extensions: 3182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3169
Number of HSP's successfully gapped: 44
Length of query: 707
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 603
Effective length of database: 6,324,786
Effective search space: 3813845958
Effective search space used: 3813845958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.9 bits)