RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7028
(707 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 8e-09
Identities = 103/599 (17%), Positives = 181/599 (30%), Gaps = 217/599 (36%)
Query: 72 NQMWERRLMKNFQLT-PVVT----AEDE--VELELRKQCQQFAVDLLQQSRSTQE---LL 121
+Q+ E+ F P T A+DE EL + + L++ S+ Q L
Sbjct: 31 SQLQEQ-----FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 122 TVLNHDPETPYEEGEPM-----KLTRLELAIDYKQKRCLDCEILLLLVSQR-----ADVI 171
L E Y EG + KL + K K + I ++++R ++
Sbjct: 86 LCLTEF-ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 172 LLEYLGVTDNHIT------GQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKD 225
L V + + GQ G Y E L LY +T Y L
Sbjct: 145 LFR--AVGEGNAQLVAIFGGQ--GNTDDYFEELRDLY-------QT--------YHVLVG 185
Query: 226 MWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAG 285
+ I F+ L L+ ++ K + G
Sbjct: 186 --DLIKFSAETLSELIR--------------TTLDAEKVFTQ-----------------G 212
Query: 286 ANVFSALKLVHLFSINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSF-ACGLNQLLWYFT 344
N+ L+ NP P + + + + S G+ QL Y
Sbjct: 213 LNILEWLE-------NPSNTPDKD------------YLLSIPI--SCPLIGVIQLAHY-- 249
Query: 345 ELERKDCYSTMSSTGALNPSEDPNWEE----HD---------AACSKWRSFNNLFESS-Q 390
T G P E ++ + H A W SF +
Sbjct: 250 -------VVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 391 SLFWA------SFGSTGTDKFELK-------GIKSYTRFWGLLMFGSYSVINV-IVLLNL 436
LF+ ++ +T L+ G+ S M S+ N+ +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-------ML---SISNLTQEQVQD 351
Query: 437 LIAMMSNSY----AMIEVGVEIEGP-GIVHTQPFDMPNLPTPLTLEEKKYLLSVE-RGDT 490
+ NS+ +E+ + + G +V + P P +L Y L++ R
Sbjct: 352 YVNKT-NSHLPAGKQVEISL-VNGAKNLVVSGP--------PQSL----YGLNLTLRKAK 397
Query: 491 ATSWEKVDKNTSMFTK----------DIT-P-----LILAAHKNNYEILKILLD-RGATL 533
A S +D++ F++ + P L+ A+ N +++K + +
Sbjct: 398 APS--GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 534 PMP-HDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWE 591
+P +D G D LR + S ++ D I+ + WE
Sbjct: 456 QIPVYDTFDGSD--LRVLSGS---------------ISERIV-----DCIIRL-PVKWE 491
Score = 50.4 bits (120), Expect = 2e-06
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 46/159 (28%)
Query: 167 RADVILLEYLG------VTDN------HITGQQ-RGLAPSYLEYLVLLYVAGYIWEETCE 213
RAD + G V +N H G++ + + +Y + V G + E +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE--K 1705
Query: 214 VWKDGLYRYLKDMWN----FIDFTRN----LLYVLVFMLRAMAYVQQQAEIEANESSKFL 265
++K+ + + T+ L + + +++ + F
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL-----KSKGLIPADATFA 1760
Query: 266 GREH----WNAFDPQLIAEGLFAGANVFS---ALKLVHL 297
G H + A L + A+V S +++V
Sbjct: 1761 G--HSLGEYAA---------LASLADVMSIESLVEVVFY 1788
Score = 38.1 bits (88), Expect = 0.012
Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 72/225 (32%)
Query: 489 DTATSWEKVDKNTSMFTKDIT---------------PLILAAHKNNYEILKILLDRGATL 533
D EK+ K + + T P + + L +G +
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAAFEDLKSKGL-I 1753
Query: 534 PMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIA--LSSNDPILTAFQLSWE 591
P G HS + EY ALAS +A +S + F
Sbjct: 1754 PAD-ATFAG--------------HS---LGEYAALAS---LADVMSIESLVEVVFY---- 1788
Query: 592 LRNLAFTE-----PECRNEY-M------ELRKQCQQFAVDLL--QQSRSTQELLTVLNHD 637
R + R+ Y M + Q A+ + + + T L+ ++N++
Sbjct: 1789 -RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 638 PETPYEE----GEPMKLTRLELAIDY-KQKRFVAHSNIQQLLAAM 677
++ G+ L + +++ K ++ +I +L ++
Sbjct: 1848 --VENQQYVAAGDLRALDTVTNVLNFIKLQKI----DIIELQKSL 1886
Score = 35.8 bits (82), Expect = 0.059
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 26/111 (23%)
Query: 608 ELRKQCQQ--------FAVDLLQQSRSTQELLT-VLNH--DPETPYEEGEPMKLTRLELA 656
+L++Q + FA D + + EL+ L + P + G+ ++ L L
Sbjct: 32 QLQEQFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLC 87
Query: 657 IDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYY 707
+ + ++ ++I L A L L++ LI Y
Sbjct: 88 LTEFENCYLEGNDIHALAAK-----LLQENDTTLVKTKE------LIKNYI 127
Score = 35.4 bits (81), Expect = 0.089
Identities = 30/163 (18%), Positives = 48/163 (29%), Gaps = 37/163 (22%)
Query: 52 DRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRKQCQQFAV-DL 110
+ F + A+ IG + N L P + ED +E ++ +L
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCY----EAYPNTSLPPSIL-EDSLENNEGVPSPMLSISNL 344
Query: 111 LQQSRSTQELLTVLN-HDPETPYEE-------------GEPMKLTRLELAIDYKQKRCLD 156
Q+ Q+ + N H P E G P L L L + K K
Sbjct: 345 TQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR-KAKAPSG 401
Query: 157 CEILLLLVSQRADVILLEYLGVTDNHITGQQRGLAP---SYLE 196
+ + S+R +L V +P L
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVA-----------SPFHSHLLV 433
Score = 30.0 bits (67), Expect = 3.2
Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 45/146 (30%)
Query: 29 VVTAEDEVELVRN----VEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQ 84
V++ E VE+V ++ A D L R +A+ V
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRV----------------- 1817
Query: 85 LTPVVTAEDEVELELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPYEE----GEPMKL 140
+ E L+ ++ + T L+ ++N++ ++ G+ L
Sbjct: 1818 ---AASFSQEA---LQYVVERVG-------KRTGWLVEIVNYN--VENQQYVAAGDLRAL 1862
Query: 141 TRLELAIDY-KQKRCLDCEILLLLVS 165
+ +++ K ++ +I+ L S
Sbjct: 1863 DTVTNVLNFIKLQK---IDIIELQKS 1885
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 6e-06
Identities = 95/652 (14%), Positives = 196/652 (30%), Gaps = 181/652 (27%)
Query: 125 NHDPETPYEEGEPMKLTRLELAIDYKQ--KRCLDC---EILLLLVSQRADVILLEYLGVT 179
+H +E GE + ++ ++ DC + + + + ++
Sbjct: 2 HHHHHMDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--------- 51
Query: 180 DNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYV 239
+HI + + L W ++ + ++++++ I++
Sbjct: 52 -DHIIMS-----KDAVSGTLRL-----FWT-LLSKQEEMVQKFVEEVLR-INYK------ 92
Query: 240 LVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANV-----FSALKL 294
F++ + Q+Q + + R +N D Q+ FA NV + L+
Sbjct: 93 --FLMSPIKTEQRQPSMMTRMYIEQRDRL-YN--DNQV-----FAKYNVSRLQPYLKLRQ 142
Query: 295 VHLFSINPHLGPLQISL------GR--MIIDIVKFFFIYTLVLLSFACGLNQLLWY-FTE 345
L + P + + G+ + +D+ + V ++ W
Sbjct: 143 -ALLELRPAKN---VLIDGVLGSGKTWVALDVCLSY----KVQCKMD---FKIFWLNLKN 191
Query: 346 LERKDCYSTMSSTGALNPSEDPNW-EEHDAACSKWRSFNNLFESSQSLF----------- 393
+ + + L DPNW D + + +++ + L
Sbjct: 192 CNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 394 ----WASFGSTGTDKFELK-GIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMI 448
+ + F L I TRF + F S + I L + + +
Sbjct: 250 LLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-------- 298
Query: 449 EVGVEIEGPGI----VHTQPFDMPNLPT---PLTL----EEKKYLLSVERGDTATSWEKV 497
E + + +P D+P P L E + + T +W+ V
Sbjct: 299 ---TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-----DGLATWDNWKHV 350
Query: 498 --DKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSL 555
DK T++ + L A ++ ++ L + P +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAHIPTILLSLIWFDVIK 401
Query: 556 RHSMSRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQ 615
M VN+ L SL+ + ++ + EL+ + NEY L +
Sbjct: 402 SDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELK------VKLENEY-ALHRSI-- 449
Query: 616 FAVDLLQQSRSTQELLTVLNHDPETPYEEG----------------EPMKLTRLELAIDY 659
VD ++ + D PY + E M L R + +D+
Sbjct: 450 --VDHYNIPKTFD------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVFLDF 500
Query: 660 KQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSK----IILIFPYY 707
RF ++Q + +D +L L L I P Y
Sbjct: 501 ---RF-----LEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Score = 46.8 bits (110), Expect = 3e-05
Identities = 111/725 (15%), Positives = 193/725 (26%), Gaps = 238/725 (32%)
Query: 42 VEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELRK 101
V+ + +D D + + ++ ++ K RL + VE LR
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 102 Q----CQQFAVDLLQQSRSTQ---ELLTVLNHDPE--TPY--EEGEPM-----KLTRLE- 144
+ Q S T+ E L +D + Y +P L L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 145 ----------------LAI----DYKQKRCLDCEILLLLVSQ-RADVILLEYLGVTDNHI 183
+A+ YK + +D +I L + + +LE L I
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 184 T--GQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLV 241
R S ++ + L R LK + LL VL
Sbjct: 210 DPNWTSRSDHSSNIKL-------------RIHSIQAELRRLLKSK----PYENCLL-VL- 250
Query: 242 FMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQ---LIAEGLFAGANVFSALKLVHLF 298
N + + WNAF+ L+ + SA H+
Sbjct: 251 ----------------LNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI- 289
Query: 299 SINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSST 358
S++ H L + + ++K+ L N +S
Sbjct: 290 SLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRR--------------LSII 333
Query: 359 GALNPSEDPN-WEEHDAACSKWR-----SFNNLFESS-QSLFWASFGSTGTDKFELKGIK 411
+ W+ W+ + ESS L + E +
Sbjct: 334 AESI-RDGLATWDN-------WKHVNCDKLTTIIESSLNVL----------EPAEYR--- 372
Query: 412 SYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIEVGVEIEGPGIVHTQPFDMPNLP 471
F L +F P ++P
Sbjct: 373 --KMFDRLSVF-----------------------------------------PPSA-HIP 388
Query: 472 TPLTLEEKKYLLSVERGDTATSWEKVDKNTSM-FTKDITPLILAAHKNNYEILKILLDRG 530
T L L+ W V K+ M + L + + I
Sbjct: 389 TI-LLS----LI----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----- 428
Query: 531 ATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSSNDPILTA----- 585
+ + ++ NE +L S+ V+ Y S+D I
Sbjct: 429 ------PSIY--LELKVKLENEYALHRSI--VDHYNIPK-----TFDSDDLIPPYLDQYF 473
Query: 586 FQ-LSWELRNLAFTE--PECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDPETPY 642
+ + L+N+ E R +++ R F L+Q + HD
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFR-----F----LEQK---------IRHDSTAWN 515
Query: 643 EEGEPMK-LTRLELAIDYKQKRFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKII 701
G + L +L+ YK ++L+ A+ D LP + K DL +I
Sbjct: 516 ASGSILNTLQQLKF---YKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIA 571
Query: 702 LIFPY 706
L+
Sbjct: 572 LMAED 576
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 42.9 bits (102), Expect = 2e-04
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
EE LL D N + D +T L A +N +++K L++ GA
Sbjct: 53 TEEVLRLLE----------RGADINYA--NVDGLTALHQACIDDNVDMVKFLVENGA 97
Score = 42.1 bits (100), Expect = 4e-04
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 472 TPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLD 528
+ + +++L S ++ T L +AA K E+LK+L+
Sbjct: 175 RIMLRDARQWLNS----------GHINDVR----HAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 529 RGA 531
Sbjct: 221 ARY 223
Score = 37.9 bits (89), Expect = 0.007
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL AA +I + L+ +GA
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGA 130
Score = 37.9 bits (89), Expect = 0.008
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AAH E +IL++
Sbjct: 234 TPLHAAAHWGKEEACRILVENLC 256
Score = 33.6 bits (78), Expect = 0.20
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
D + A + E + LL+RGA
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGA 64
Score = 33.2 bits (77), Expect = 0.22
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 509 TPLILAAHKNNYEILKILLDRG 530
TPL +A + E+L+ ++R
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQ 162
Score = 30.9 bits (71), Expect = 1.5
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L + L+ + +
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRK 32
Score = 28.2 bits (64), Expect = 8.9
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T +A + ++ +
Sbjct: 267 TAFDVADEDILGYLEELQKKQNL 289
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 40.1 bits (95), Expect = 3e-04
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
L+E K ++ D N PL AA EIL+ LL +GA
Sbjct: 20 LDEVKDYVAK----------GEDVNR----TLEGGRKPLHYAADCGQLEILEFLLLKGA 64
Score = 40.1 bits (95), Expect = 3e-04
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD---ITPLILAAHKNNYEILKILLDRGA 531
++LL D N D ITPL+ A ++ + +K+LL +GA
Sbjct: 57 EFLLLK----------GADINA----PDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 36.2 bits (85), Expect = 0.006
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ A + + +K + +G
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGE 31
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 39.3 bits (93), Expect = 3e-04
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
K LL DKN TPL LAA + E++K+LL+ GA
Sbjct: 19 KLLLEAG-----ADVNAKDKN------GRTPLHLAARNGHLEVVKLLLEAGA 59
Score = 38.9 bits (92), Expect = 5e-04
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD---ITPLILAAHKNNYEILKILLDRGA 531
K LL D N KD TPL LAA + E++K+LL+ GA
Sbjct: 52 KLLLEAG----------ADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 38.1 bits (90), Expect = 8e-04
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + E++K+LL+ GA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGA 26
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
LL V R + T + K T L +A + N ++ +L++ GA
Sbjct: 74 ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125
Score = 39.0 bits (91), Expect = 0.003
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA +L +L R
Sbjct: 235 TPLALAASSGKIGVLAYILQREI 257
Score = 39.0 bits (91), Expect = 0.004
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 480 KYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
L+ V+ + K K F PL LAA N I+K LL
Sbjct: 118 TLLVENGADVQAAAN-GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172
Score = 29.8 bits (67), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 506 KDITPLILAAHKNNYEILKILLD 528
D + A ++N + L+ LL
Sbjct: 12 YDRRSIFDAVAQSNCQELESLLP 34
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 39.6 bits (94), Expect = 4e-04
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
K LL D N KD TPL LAA + E++K+LL+ GA
Sbjct: 85 KLLLEA----------GADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 39.3 bits (93), Expect = 7e-04
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 24/70 (34%)
Query: 472 TPL-------TLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYE 521
TPL LE K LL D N KD TPL LAA + E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEA----------GADVNA----KDKNGRTPLHLAARNGHLE 49
Query: 522 ILKILLDRGA 531
++K+LL+ GA
Sbjct: 50 VVKLLLEAGA 59
Score = 38.5 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
K LL D N KD TPL LAA + E++K+LL+ GA
Sbjct: 52 KLLLEAG----------ADVNA----KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 39.1 bits (92), Expect = 6e-04
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 14/52 (26%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
L+ RG + L+ AA + ++IL+ GA
Sbjct: 11 SGLVP--RG--------SHMGS----DLGKKLLEAARAGQDDEVRILMANGA 48
Score = 37.6 bits (88), Expect = 0.002
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + E++K+LL+ GA
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGA 81
Score = 27.9 bits (63), Expect = 3.9
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 514 AAHKNNYEILKILLDRGA 531
+ +++ L+ RG+
Sbjct: 1 GSSHHHHHHSSGLVPRGS 18
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 40.9 bits (97), Expect = 7e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+YLLS G D TP+I A + +++K+LL +G+
Sbjct: 94 QYLLS--NG--QMDVNCQDDG------GWTPMIWATEYKHVDLVKLLLSKGS 135
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ LL+ K D + +I +PL +AA +N Y+ + + L R +
Sbjct: 161 EILLAA----------KCDLHA----VNIHGDSPLHIAARENRYDCVVLFLSRDS 201
Score = 39.7 bits (94), Expect = 0.002
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 497 VDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
++ + +PL AA + +I +L+ GA
Sbjct: 2 MNFKM----EHQNKRSPLHAAAEAGHVDICHMLVQAGA 35
Score = 38.9 bits (92), Expect = 0.003
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 509 TPLILAAHKNNYEILKILLDRGAT 532
T L LAA K +YE+++ LL G
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQM 102
Score = 37.8 bits (89), Expect = 0.007
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L AA +I +ILL
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKC 168
Score = 37.8 bits (89), Expect = 0.008
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL+ AA N+ E +K L+ GA
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGA 68
Score = 34.7 bits (81), Expect = 0.071
Identities = 8/55 (14%), Positives = 12/55 (21%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
LS D K+ TPL A+ + +
Sbjct: 194 VLFLSR----------DSDVTL----KNKEGETPLQCASLNSQVWSALQMSKALQ 234
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 38.9 bits (92), Expect = 7e-04
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TP LA ++EI+K+L +GA
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKGA 99
Score = 38.5 bits (91), Expect = 9e-04
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD---ITPLILAAHKNNYEILKILLDRGA 531
K LLS +G D N + TPL LAA + EI+K+LL +GA
Sbjct: 26 KKLLS--KG--------ADVNA----RSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Score = 38.5 bits (91), Expect = 0.001
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA + E +K LL +GA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGA 33
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 41.3 bits (98), Expect = 8e-04
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +A H NN +I+K+LL RG
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGG 203
Score = 39.8 bits (94), Expect = 0.003
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA +N E+ + LL G
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGG 236
Score = 39.0 bits (92), Expect = 0.005
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
K TPL +AA + ++LL+R A
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERDA 170
Score = 39.0 bits (92), Expect = 0.005
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA + E+ K LL A
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNKA 71
Score = 38.6 bits (91), Expect = 0.006
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL L A + + + +L+ G
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGV 302
Score = 38.6 bits (91), Expect = 0.006
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +A+H N +++K LL A
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQA 335
Score = 38.6 bits (91), Expect = 0.007
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA + + E + LL++ A
Sbjct: 115 TPLHIAAREGHVETVLALLEKEA 137
Score = 37.9 bits (89), Expect = 0.010
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA + ++K+LL+ A
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNA 104
Score = 37.9 bits (89), Expect = 0.011
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL AA + + +I+ +LL GA
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGA 368
Score = 37.9 bits (89), Expect = 0.012
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +A+ + I+K LL RGA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGA 38
Score = 37.5 bits (88), Expect = 0.015
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + + E++ +LL + A
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQA 269
Score = 31.3 bits (72), Expect = 1.1
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +A + +L
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTD 401
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 39.7 bits (94), Expect = 8e-04
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
LL R VD N D TPL+ A N+ + ++ LL RGA
Sbjct: 86 GLLLE--RD--------VDINI----YDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Score = 39.7 bits (94), Expect = 9e-04
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 472 TPLT-------LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILK 524
+ L++ K L +G K D+ TPLI A+ E ++
Sbjct: 4 LSIHQLAAQGELDQLKEHLR--KG--DNLVNKPDER------GFTPLIWASAFGEIETVR 53
Query: 525 ILLDRGA 531
LL+ GA
Sbjct: 54 FLLEWGA 60
Score = 38.9 bits (92), Expect = 0.002
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 13/53 (24%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
++LL D + K+ + L LA+ +I+ +LL+R
Sbjct: 53 RFLLEW----------GADPHIL--AKERESALSLASTGGYTDIVGLLLERDV 93
Score = 38.6 bits (91), Expect = 0.002
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
+ LL+ RG D T TP+ LA ++ +++ +
Sbjct: 119 EALLA--RG--------ADLTTE--ADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 38.2 bits (90), Expect = 0.003
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 507 DITPLILAAHKNNYEILKILLDRGA 531
D + A + + LK L +G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGD 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 40.5 bits (96), Expect = 8e-04
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
K L D N T +T L LA K +E+ + L++ GA
Sbjct: 89 KSLYDRPLK--------PDLNKI--TNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Score = 37.0 bits (87), Expect = 0.012
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL + +EI LL +
Sbjct: 38 IPLHWSVSFQAHEITSFLLSKME 60
Score = 36.3 bits (85), Expect = 0.019
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL AA + +++++L G
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGK 164
Score = 34.7 bits (81), Expect = 0.067
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TP +A N E++K L DR
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPL 96
Score = 34.3 bits (80), Expect = 0.085
Identities = 5/24 (20%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNY-EILKILLDRGA 531
PL A +N + ++ ++L + +
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPS 27
Score = 32.0 bits (74), Expect = 0.49
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNYEILKILLDR-GA 531
TPL A + + + +L+++ GA
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGA 199
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 40.5 bits (96), Expect = 8e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 26/72 (36%)
Query: 472 TPL--------TLEEKKYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNN 519
TPL +++ + LL+ V GD K KNT L A N
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGD------KYHKNT--------ALHWAVLAGN 189
Query: 520 YEILKILLDRGA 531
++ +LL+ GA
Sbjct: 190 TTVISLLLEAGA 201
Score = 39.0 bits (92), Expect = 0.003
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ L+ G D D T L AA N +++K + +GA
Sbjct: 26 RELVE--AG--------YDVRQ----PDKENVTLLHWAAINNRIDLVKYYISKGA 66
Score = 38.2 bits (90), Expect = 0.005
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
KY +S + + TPL A + + ++ L+ GA
Sbjct: 59 KYYISK----------GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100
Score = 38.2 bits (90), Expect = 0.005
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
L+ D + D + + LAA + I+ L+ +G
Sbjct: 93 VQLMKY----------GADPSL----IDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Score = 37.4 bits (88), Expect = 0.008
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
++ A YE + L++ G
Sbjct: 11 WDIVKATQYGIYERCRELVEAGY 33
Score = 37.0 bits (87), Expect = 0.014
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
LL + + ++I + L LA + N ++ L +
Sbjct: 194 SLLLEA----------GANVDA----QNIKGESALDLAKQRKNVWMINHLQEARQ 234
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 39.7 bits (94), Expect = 9e-04
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
K LL VD N D TPL+ A H N+ + +K+LL+ GA
Sbjct: 86 KMLLDC----------GVDVNE----YDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 38.9 bits (92), Expect = 0.002
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
++LL D K + L LA K +I+K+LLD G
Sbjct: 53 EFLLQN----------GADPQLL--GKGRESALSLACSKGYTDIVKMLLDCGV 93
Score = 38.5 bits (91), Expect = 0.002
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ ++ N D TPL+ AA +++ LL GA
Sbjct: 20 ATRIE----------QENVINH----TDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Score = 38.1 bits (90), Expect = 0.003
Identities = 2/23 (8%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ A + L +++
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQEN 27
Score = 37.8 bits (89), Expect = 0.004
Identities = 7/53 (13%), Positives = 12/53 (22%), Gaps = 13/53 (24%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
K LL D T + LA + +++
Sbjct: 119 KMLLES----------GADPTIE--TDSGYNSMDLAVALGYRSVQQVIESHLL 159
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 38.9 bits (92), Expect = 9e-04
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL AA + +I+K+LL GA
Sbjct: 78 SPLHDAAKNGHVDIVKLLLSYGA 100
Score = 37.4 bits (88), Expect = 0.003
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL A + + +++++LL A
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKA 67
Score = 37.4 bits (88), Expect = 0.003
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 497 VDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+D T+ + T L +A+ K + ++ LL G+
Sbjct: 2 IDPFTN--HRGETLLHIASIKGDIPSVEYLLQNGS 34
Score = 33.5 bits (78), Expect = 0.069
Identities = 2/23 (8%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ ++ +L + +
Sbjct: 111 RPVDYTDDESMKSLLLLPEKNES 133
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 41.1 bits (97), Expect = 9e-04
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 16/55 (29%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
KYL+ E+G +K+ +D TP++LAA + E++ L+ +GA
Sbjct: 296 KYLVG-EKG--------SNKDK----QDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337
Score = 37.6 bits (88), Expect = 0.012
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL+LA ++ L+ GA
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGA 190
Score = 36.9 bits (86), Expect = 0.020
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 22/75 (29%)
Query: 472 TPL----------TLEEKKYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHK 517
T L + K L+ V+ A + T L AA
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE-KYK------GRTALHYAAQV 289
Query: 518 NNYEILKILL-DRGA 531
+N I+K L+ ++G+
Sbjct: 290 SNMPIVKYLVGEKGS 304
Score = 36.5 bits (85), Expect = 0.027
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 495 EKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
E VD D T LA N++ I+ I
Sbjct: 340 EAVDAT------DHTARQLAQANNHHNIVDIFDRCRP 370
Score = 32.2 bits (74), Expect = 0.52
Identities = 4/23 (17%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L A +Y I + +
Sbjct: 96 IKLHTEA-AGSYAITEPITRESV 117
Score = 32.2 bits (74), Expect = 0.63
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 509 TPLILAAHKNNYEILKILLD 528
+ L AA ++ ++ +L+
Sbjct: 201 SALHQAAANRDFGMMVYMLN 220
Score = 31.1 bits (71), Expect = 1.4
Identities = 2/24 (8%), Positives = 4/24 (16%)
Query: 508 ITPLILAAHKNNYEILKILLDRGA 531
+ P N +
Sbjct: 62 LYPNPQGYGNGNDFLGDFNHTNLQ 85
Score = 29.9 bits (68), Expect = 2.8
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCD 544
T L A ++ E + L+ A + G D
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAA----GAD 158
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 41.1 bits (96), Expect = 0.001
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATL 533
L++ ++LLS+ + + + L LA N +LL + L
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDAN------ELLRLALRLGNQGACALLLSIPSVL 345
Score = 34.5 bits (79), Expect = 0.12
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 11/53 (20%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFT-KDITPLILAAHKNNYEILKILLDRGA 531
L + + +M ++ LAA + +L L +
Sbjct: 145 NRLCEL----------APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187
Score = 33.4 bits (76), Expect = 0.23
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 11/56 (19%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
L+ LL+ ++ LAA + +L L +
Sbjct: 108 LDTLCLLLT----------SDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELAP 152
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 41.0 bits (97), Expect = 0.001
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
++ ++ + +K + L A N ++ ++ G
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQ------GNSHLHWAILINWEDVAMRFVEMGI 235
Score = 41.0 bits (97), Expect = 0.001
Identities = 7/40 (17%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 495 EKVDKNTSMFTKD---ITPLILAAHKNNYEILKILLDRGA 531
K+++ D + + +AA K + ++ L++ G
Sbjct: 9 PKLNRIK----SDDENMEKIHVAARKGQTDEVRRLIETGV 44
Score = 39.5 bits (93), Expect = 0.003
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA + K L G
Sbjct: 55 TALHLACKFGCVDTAKYLASVGE 77
Score = 39.5 bits (93), Expect = 0.003
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ K + ++ L A
Sbjct: 325 GGAVKRKKKAAPAVKRMKLAPSA 347
Score = 38.3 bits (90), Expect = 0.008
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 480 KYLLSVERGDTATSWEKVDKN----TSMFTKDITPLILAAHKNNYEILKILLDRGA 531
K LL + D N + + AA + E+L++L ++
Sbjct: 261 KELLQ--KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314
Score = 37.9 bits (89), Expect = 0.009
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
PL L+ + K LL +
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVF 270
Score = 37.2 bits (87), Expect = 0.016
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 15/53 (28%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
KYL SV + P+ LA N +++ L++
Sbjct: 70 KYLASV----------GEVHSL----WHGQKPIHLAVMANKTDLVVALVEGAK 108
Score = 36.4 bits (85), Expect = 0.030
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 509 TPLILAAHKNNYEILKILLDRGAT 532
TPL+ A N E L +++D +
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPS 198
Score = 34.8 bits (81), Expect = 0.073
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 480 KYLLSV--ERGDTATSW-------EKVDKNTSMFTKD-ITPLILAAHKNNY--EILKILL 527
L+ ERG S E + + + T L E++KIL+
Sbjct: 101 VALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILV 160
Query: 528 DRGA 531
GA
Sbjct: 161 QLGA 164
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 40.6 bits (96), Expect = 0.001
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +A + E++++L D GA
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGA 182
Score = 39.8 bits (94), Expect = 0.002
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA +L++LL GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGA 216
Score = 39.1 bits (92), Expect = 0.003
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL A + N + ++L GA
Sbjct: 227 TPLGSALLRPNPILARLLRAHGA 249
Score = 38.3 bits (90), Expect = 0.006
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 505 TKD-ITPLILAAHKNNYEILKILLDRGA 531
T+D T L LA + L LL A
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSA 33
Score = 38.3 bits (90), Expect = 0.006
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA + +LL
Sbjct: 80 TALHLACRVRAHTCACVLLQPRP 102
Score = 37.9 bits (89), Expect = 0.007
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LAA ++ L GA
Sbjct: 47 TALHLAAILGEASTVEKLYAAGA 69
Score = 28.3 bits (64), Expect = 8.0
Identities = 6/55 (10%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 480 KYLLS---VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
LL D + ++ ++ + T + + E D
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 38.9 bits (92), Expect = 0.001
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA K YEI K+LL GA
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGA 132
Score = 38.5 bits (91), Expect = 0.002
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL A +YE+ ++L+ GA
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGA 99
Score = 36.6 bits (86), Expect = 0.009
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA N +++ LL GA
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGA 66
Score = 35.8 bits (84), Expect = 0.017
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+ L+ AA + E +K L +
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQS 32
Score = 32.0 bits (74), Expect = 0.37
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL L + +I +L A
Sbjct: 143 TPLDLVKD-GDTDIQDLLRGDAA 164
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 39.3 bits (93), Expect = 0.001
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ LLS + NT KD TPL+ + E+ LL+ GA
Sbjct: 85 EKLLSK----------GSNVNT----KDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125
Score = 38.9 bits (92), Expect = 0.002
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+LL + N +++ TPLI+A+ EI+K LL+ GA
Sbjct: 118 YFLLEH----------GANVND----RNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 38.5 bits (91), Expect = 0.003
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
L+ KDI T LI A N I + LL +G+
Sbjct: 52 DKLVEN----------FDKLED----KDIEGSTALIWAVKNNRLGIAEKLLSKGS 92
Score = 37.8 bits (89), Expect = 0.005
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL++A + L++
Sbjct: 37 TPLMVACMLGMENAIDKLVENFD 59
Score = 33.9 bits (79), Expect = 0.10
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 17/52 (32%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLD 528
K LL + D + +D+ T A E++KI +
Sbjct: 151 KKLLEL----------GADISA----RDLTGLTAEASARIFGRQEVIKIFTE 188
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 40.2 bits (95), Expect = 0.001
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 15/53 (28%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
LL+ KN + PL AA + +I+KILL G
Sbjct: 48 CTLLN----------AGALKNL----LENEFPLHQAATLEDTKIVKILLFSGL 86
Score = 39.8 bits (94), Expect = 0.002
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ + + + +++ +LLD
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMT 185
Score = 39.0 bits (92), Expect = 0.003
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 18/59 (30%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
++ K LS D D+ + A NN ++ LL+ GA
Sbjct: 12 SKQLKSFLS-----------SKDTFK----ADVHGHSASYYAIADNNVRLVCTLLNAGA 55
Score = 37.9 bits (89), Expect = 0.007
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L A N + +K+ + +
Sbjct: 97 TALYYAVDSGNMQTVKLFVKKNW 119
Score = 37.5 bits (88), Expect = 0.011
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T A N+ I+ L
Sbjct: 131 TSFYHAVMLNDVSIVSYFLSEIP 153
Score = 33.3 bits (77), Expect = 0.22
Identities = 4/26 (15%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 507 DI-TPLILAAHKNNYEILKILLDRGA 531
+I + + ++ EI K+++++
Sbjct: 220 NIYSANLENVLLDDAEIAKMIIEKHV 245
Score = 31.7 bits (73), Expect = 0.61
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 509 TPLI-LAAHKNNYEILKILLDRGA 531
P I LA + E+L+ L
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDI 219
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 39.7 bits (94), Expect = 0.002
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + +YE K+LLD A
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFA 182
Score = 38.9 bits (92), Expect = 0.003
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LAA + + K LL+ A
Sbjct: 27 TALHLAARYSRSDAAKRLLEASA 49
Score = 38.2 bits (90), Expect = 0.005
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPLILAA +L+ L++ A
Sbjct: 94 TPLILAARLAVEGMLEDLINSHA 116
Score = 37.8 bits (89), Expect = 0.006
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P +A + +++I+++L +
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL 215
Score = 37.4 bits (88), Expect = 0.008
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ L AA NN + +LL GA
Sbjct: 127 SALHWAAAVNNVDAAVVLLKNGA 149
Score = 36.6 bits (86), Expect = 0.014
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 509 TPLILAAHKNNYEILKILLDRGAT 532
TPL A + + +IL+ AT
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRAT 83
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 39.8 bits (94), Expect = 0.002
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T + AA + LK L RGA
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGA 129
Score = 39.8 bits (94), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TP +LAA + ++LK+ L +GA
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSKGA 96
Score = 38.6 bits (91), Expect = 0.005
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L+LA +I ++L RGA
Sbjct: 255 TALLLAVELKLKKIAELLCKRGA 277
Score = 38.6 bits (91), Expect = 0.005
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ LL G + N TPL A + +I+++LL GA
Sbjct: 22 QQLLE--GG--------ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Score = 38.2 bits (90), Expect = 0.006
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 505 TKDITPLILAAHKNNYEILKILLDRGA 531
+D LI A + ++++ LL+ GA
Sbjct: 3 VEDNHLLIKAVQNEDVDLVQQLLEGGA 29
Score = 34.8 bits (81), Expect = 0.086
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNYEILKILLDR-GA 531
TPLILA K + +++ LL++
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHI 244
Score = 34.4 bits (80), Expect = 0.089
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNYEILKILLD-RGA 531
T L+ AA K + E+LKILLD GA
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGA 173
Score = 33.2 bits (77), Expect = 0.26
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 20/59 (33%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNY----EILKILLDRGA 531
K LL E G D N D LI A ++ I +LLD GA
Sbjct: 165 KILLD-EMG--------ADVNA----CDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 39.7 bits (94), Expect = 0.002
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 13/55 (23%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ LL + +D ++ T L +A + E +++LL+RGA
Sbjct: 96 RALLD--SA----APGTLDLEA----RNYDGLTALHVAVNTECQETVQLLLERGA 140
Score = 39.0 bits (92), Expect = 0.003
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL++A + +IL+ R A
Sbjct: 218 TPLMVARSRRVIDILRGKATRPA 240
Score = 38.6 bits (91), Expect = 0.004
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA ++++L+ GA
Sbjct: 48 TPLHLAVITTLPSVVRLLVTAGA 70
Score = 38.6 bits (91), Expect = 0.004
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PLI A N+ ++++LL GA
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGA 174
Score = 37.8 bits (89), Expect = 0.007
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ L A+ + +++ L+ GA
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGA 207
Score = 37.8 bits (89), Expect = 0.007
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPM 535
T LA + L+ LLD A +
Sbjct: 81 TAAHLACEHRSPTCLRALLDSAAPGTL 107
Score = 31.7 bits (73), Expect = 0.63
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 509 TPLILAAHKNNYEILKILLDR 529
TPL +A + N + L++
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNL 31
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 38.2 bits (90), Expect = 0.002
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ LA + + +I + L
Sbjct: 113 LPVDLAEEQGHRDIARYLHAATG 135
Score = 37.8 bits (89), Expect = 0.003
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L AA + E ++ LL+ GA
Sbjct: 14 AGLATAAARGQVETVRQLLEAGA 36
Score = 37.0 bits (87), Expect = 0.005
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 499 KNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ + T P+ AA + + L +L GA
Sbjct: 73 ADPATLT---RPVHDAAREGFLDTLVVLHRAGA 102
Score = 34.3 bits (80), Expect = 0.033
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 21/68 (30%)
Query: 472 TPLT-------LEEKKYLLSVERG-DTATSWEKVDKNTSMFTKDITPLILAAHKNNYEIL 523
L +E + LL G D +++ P+ + + ++
Sbjct: 14 AGLATAAARGQVETVRQLLE--AGADP----NALNRF------GRRPIQVMM-MGSAQVA 60
Query: 524 KILLDRGA 531
++LL GA
Sbjct: 61 ELLLLHGA 68
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 39.8 bits (93), Expect = 0.002
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ LL + ++ + T L +A + +++L+++GA
Sbjct: 62 NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
Score = 37.1 bits (86), Expect = 0.013
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL++AA I + ++ R
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREI 249
Score = 35.1 bits (81), Expect = 0.057
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL LAA N I+ L + G
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGH 164
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 39.0 bits (92), Expect = 0.002
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 24/70 (34%)
Query: 472 TPL-------TLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYE 521
L T + K+ L + D TPL +A H N+ E
Sbjct: 8 ALLEAANQRDTKKVKEILQD----------TTYQVDE----VDTEGNTPLNIAVHNNDIE 53
Query: 522 ILKILLDRGA 531
I K L+DRGA
Sbjct: 54 IAKALIDRGA 63
Score = 38.2 bits (90), Expect = 0.004
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
K L+ D N ++ +P + A + EIL +L
Sbjct: 56 KALIDR----------GADINL----QNSISDSPYLYAGAQGRTEILAYMLKHAT 96
Score = 36.3 bits (85), Expect = 0.017
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
Y+L D K ++ LI AA K + + +K+LL+ G
Sbjct: 89 AYMLKHATPDL----NKHNRY------GGNALIPAAEKGHIDNVKLLLEDGR 130
Score = 31.7 bits (73), Expect = 0.51
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 21/60 (35%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNY-----EILKILLDRGA 531
K LL G D + ++ T LI A +I+K+L++ GA
Sbjct: 123 KLLLE--DGR-------EDIDF----QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169
Score = 31.7 bits (73), Expect = 0.53
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 17/51 (33%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKD---ITPLILAAHKNNYEILKILL 527
K L+ D++ KD T + A K EI KIL
Sbjct: 162 KLLMEN----------GADQSI----KDNSGRTAMDYANQKGYTEISKILA 198
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 17/59 (28%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKD---ITPLILAAHKNNYEILKILLDRGA 531
LE + + E D + + IT L A NY I+ L+ GA
Sbjct: 34 LEVVQQAVK----------EMNDPSQ----PNEEGITALHNAICGANYSIVDFLITAGA 78
Score = 37.2 bits (87), Expect = 0.011
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA N+ I L+ GA
Sbjct: 89 TPLHCAASCNDTVICMALVQHGA 111
Score = 32.6 bits (75), Expect = 0.30
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L+ AA E+++ +
Sbjct: 23 VLLLDAALTGELEVVQQAVKEMN 45
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 38.1 bits (90), Expect = 0.002
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + EI ++LL GA
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGA 104
Score = 37.7 bits (89), Expect = 0.003
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA + EI+++LL GA
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGA 71
Score = 35.4 bits (83), Expect = 0.015
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 507 DI-TPLILAAHKNNYEILKILLDRGA 531
D+ L+ AA + ++IL+ GA
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGA 38
Score = 32.0 bits (74), Expect = 0.24
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 509 TPLILAAHKNNYEILKILL 527
T ++ N ++ +IL
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 39.1 bits (92), Expect = 0.002
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 480 KYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ LL+ V T + + N + + PL AA + EI+++L++ GA
Sbjct: 92 RALLARGASVSARATGSVFHYRPHNLIYYGE--HPLSFAACVGSEEIVRLLIEHGA 145
Score = 38.4 bits (90), Expect = 0.004
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TP LA + N + + L+ +
Sbjct: 199 TPFKLAGVEGNIVMFQHLMQKRK 221
Score = 38.4 bits (90), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +A N +++ LL RGA
Sbjct: 77 TALHIAVINQNVNLVRALLARGA 99
Score = 36.4 bits (85), Expect = 0.020
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +AA +N E +L++
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAP 61
Score = 34.1 bits (79), Expect = 0.12
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNYEIL-KILLDRGA 531
+PL+LAA +N+ + L K+L G
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGC 28
Score = 29.5 bits (67), Expect = 3.2
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 509 TPLILAAHKNNYEI----LKILLDRGA 531
T L + + N +LL
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDG 182
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 38.9 bits (91), Expect = 0.002
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LK++ D
Sbjct: 156 TALEFVKRCQKPIALKMMEDYIK 178
Score = 35.4 bits (82), Expect = 0.033
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ AA YE L ++G
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGY 30
Score = 32.3 bits (74), Expect = 0.29
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 6/29 (20%)
Query: 509 TPLILAAHKNN------YEILKILLDRGA 531
T E+ KI L++GA
Sbjct: 77 TLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Score = 31.2 bits (71), Expect = 0.81
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
E+ L E+G E V K+ ++ L + Y+I L+++GA
Sbjct: 19 YEDFLELF--EKGYEDK--ESVLKSNILYD----VLRNNNDEARYKISMFLINKGA 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 38.1 bits (90), Expect = 0.002
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 506 KDI---TPLILAAHKNNYEILKILLDRGA 531
KD+ T L A N+ E++++L+ GA
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 37.8 bits (89), Expect = 0.003
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA + + I+++LL GA
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGA 91
Score = 37.4 bits (88), Expect = 0.005
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL LAA ++ ++LL G
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGV 58
Score = 36.2 bits (85), Expect = 0.009
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L+ AA + ++IL+ GA
Sbjct: 4 KKLLEAARAGQDDEVRILMANGA 26
Score = 30.4 bits (70), Expect = 0.86
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 509 TPLILAAHKNNYEILKIL 526
T ++ N ++ +IL
Sbjct: 135 TAFDISIDNGNEDLAEIL 152
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 39.1 bits (92), Expect = 0.002
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEILKILLDRGA 531
+ + ++ D + + IT L A + EI+K L+ G
Sbjct: 50 FDLVQRIIY--EV--------DDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGV 94
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
K+L+ G V+ N D TPL AA NN ++ K L++ GA
Sbjct: 87 KFLVQ--FG--------VNVNA----ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 35.3 bits (82), Expect = 0.039
Identities = 4/68 (5%), Positives = 20/68 (29%), Gaps = 21/68 (30%)
Query: 472 TPLT-------LEEKKYLLSVERGDTATSWEKVDKNTSMFTKD-ITPLILAAHKNNYEIL 523
L + ++ G + F + L+ ++ + ++++
Sbjct: 7 VSLPPGKRTNLRKTGSERIA--HG--------MRVK---FNPLPLALLLDSSLEGEFDLV 53
Query: 524 KILLDRGA 531
+ ++
Sbjct: 54 QRIIYEVD 61
Score = 32.2 bits (74), Expect = 0.40
Identities = 6/56 (10%), Positives = 12/56 (21%), Gaps = 16/56 (28%)
Query: 480 KYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
K+L+ V D T+ + + + L
Sbjct: 120 KFLVESGAAVFAMT------YSDMQTA------ADKCEEMEEGYTQCSQFLYGVQE 163
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 38.2 bits (90), Expect = 0.002
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ LA + ++ + L
Sbjct: 113 LPVDLAEELGHRDVARYLRAAAG 135
Score = 37.8 bits (89), Expect = 0.003
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L AA + E ++ LL+ GA
Sbjct: 14 DWLATAAARGRVEEVRALLEAGA 36
Score = 37.1 bits (87), Expect = 0.007
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ AA + + L +L GA
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGA 102
Score = 34.0 bits (79), Expect = 0.067
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 25/70 (35%)
Query: 472 TPLT-------LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYE 521
L +EE + LL G + N + P+ + +
Sbjct: 14 DWLATAAARGRVEEVRALLE--AG--------ANPNA----PNSYGRRPIQVMM-MGSAR 58
Query: 522 ILKILLDRGA 531
+ ++LL GA
Sbjct: 59 VAELLLLHGA 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 38.1 bits (90), Expect = 0.002
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 509 TPLILAAHKNNYEILKILLDRGAT 532
PL LAA + + +++ L+ A+
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 38.1 bits (90), Expect = 0.003
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
++L+ A++ + T LA E++ ++ GA
Sbjct: 120 EFLVK--HT--ASNVGHRNHK------GDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (89), Expect = 0.003
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L AA + + E L LL
Sbjct: 7 NELASAAARGDLEQLTSLLQNNV 29
Score = 37.4 bits (88), Expect = 0.004
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ AA + L+ LL+ A
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQA 94
Score = 33.5 bits (78), Expect = 0.091
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 18/59 (30%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
LE+ LL V+ N ++ T L + N EI + LL RGA
Sbjct: 18 LEQLTSLLQ--NN--------VNVNA----QNGFGRTALQVMKL-GNPEIARRLLLRGA 61
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 39.4 bits (93), Expect = 0.003
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA +K LL+ GA
Sbjct: 192 TPLYLACENQQRACVKKLLESGA 214
Score = 38.6 bits (91), Expect = 0.004
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 507 DITPLILAAHKNNYEILKILLDRGA 531
D +P+ AA + L+ L+ +G
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGW 83
Score = 38.6 bits (91), Expect = 0.005
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL A +++ + +LL GA
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGA 149
Score = 38.6 bits (91), Expect = 0.005
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 505 TKD-ITPLILAAHKNNYEILKILLDRGA 531
T D ++PL A + +KILL GA
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILLKHGA 116
Score = 38.2 bits (90), Expect = 0.005
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL + E+ +L+D GA
Sbjct: 224 SPLHAVVRTASEELACLLMDFGA 246
Score = 37.9 bits (89), Expect = 0.007
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P+ AA + + E + L+ G
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGG 181
Score = 30.2 bits (69), Expect = 1.9
Identities = 3/19 (15%), Positives = 10/19 (52%)
Query: 513 LAAHKNNYEILKILLDRGA 531
+ + +++ L+ RG+
Sbjct: 1 MGSSHHHHHHSSGLVPRGS 19
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 38.6 bits (91), Expect = 0.003
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ L +T + D + +PL A + ++++L+ RGA
Sbjct: 18 AVAVRLWLD----NTENDLNQGDDH------GFSPLHWACREGRSAVVEMLIMRGA 63
Score = 38.2 bits (90), Expect = 0.003
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ + N +++ LD
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTE 29
Score = 38.2 bits (90), Expect = 0.004
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL A ++ + L+ GA
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGA 129
Score = 37.4 bits (88), Expect = 0.005
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ L+ RG +++ D TPL LAA + +I++ LL A
Sbjct: 56 EMLIM--RG---ARINVMNRG------DDTPLHLAASHGHRDIVQKLLQYKA 96
Score = 36.6 bits (86), Expect = 0.012
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ A + + G
Sbjct: 140 MPVDKAKAPLRELLRERAEKMGQ 162
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 38.6 bits (91), Expect = 0.003
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L+ A + + +++L + GA
Sbjct: 78 TALLFVAGLGSDKCVRLLAEAGA 100
Score = 37.5 bits (88), Expect = 0.006
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +AA E+++ L++ GA
Sbjct: 112 TALHMAAGYVRPEVVEALVELGA 134
Score = 34.0 bits (79), Expect = 0.073
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+ TP AA K + + L LL+
Sbjct: 43 EYETPWWTAARKADEQALSQLLE-DR 67
Score = 34.0 bits (79), Expect = 0.082
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA + G
Sbjct: 145 TALELAREILKTTPKGNPMQFGR 167
Score = 30.9 bits (71), Expect = 0.86
Identities = 1/23 (4%), Positives = 4/23 (17%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
++ + A
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAA 38
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 39.0 bits (92), Expect = 0.003
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + +YE K+LLD A
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFA 214
Score = 37.8 bits (89), Expect = 0.008
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LAA + + K LL+ A
Sbjct: 59 TALHLAARYSRSDAAKRLLEASA 81
Score = 37.8 bits (89), Expect = 0.008
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPLILAA +L+ L++ A
Sbjct: 126 TPLILAARLAVEGMLEDLINSHA 148
Score = 37.4 bits (88), Expect = 0.009
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ L AA NN + +LL GA
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGA 181
Score = 36.3 bits (85), Expect = 0.021
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 509 TPLILAAHKNNYEILKILLDRGAT 532
TPL A + + +IL+ AT
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRAT 115
Score = 35.5 bits (83), Expect = 0.044
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P +A + +++I+++L
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHH 247
Score = 29.0 bits (66), Expect = 4.6
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 20/51 (39%)
Query: 497 VDKNTSMFTKDI---TPLILAA-------------HKNNYEILKILLDRGA 531
+D N + TPL++A+ ++ ++ + +GA
Sbjct: 1 MDVNV----RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA 47
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 39.1 bits (92), Expect = 0.003
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L+ A + + +++L + GA
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGA 101
Score = 38.4 bits (90), Expect = 0.004
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +AA E+++ L++ GA
Sbjct: 113 TALHMAAGYVRPEVVEALVELGA 135
Score = 35.3 bits (82), Expect = 0.041
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA + G
Sbjct: 146 TALELAREILKTTPKGNPMQFGR 168
Score = 34.9 bits (81), Expect = 0.059
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 505 TKDITPLILAAHKNNYEILKILLDRGA 531
++ TP AA K + + L LL+
Sbjct: 43 SEYETPWWTAARKADEQALSQLLE-DR 68
Score = 31.8 bits (73), Expect = 0.67
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
K L K+ + + A
Sbjct: 198 KGKDVEYLVRWKDGGDCEWVKGVHVA 223
Score = 30.3 bits (69), Expect = 1.9
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+ + ++ E+ +I+ RG
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGK 198
Score = 30.3 bits (69), Expect = 2.1
Identities = 1/26 (3%), Positives = 5/26 (19%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+ ++ + A
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAA 39
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 38.1 bits (90), Expect = 0.003
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + EI+++LL GA
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGA 137
Score = 37.7 bits (89), Expect = 0.004
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 17/59 (28%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+E + L++ D N +D TPL LAA + EI+++LL GA
Sbjct: 27 DDEVRILMAN----------GADVNA----EDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Score = 37.0 bits (87), Expect = 0.008
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + EI+++LL GA
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGA 104
Score = 36.2 bits (85), Expect = 0.013
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L+ AA + ++IL+ GA
Sbjct: 16 KKLLEAARAGRDDEVRILMANGA 38
Score = 31.6 bits (73), Expect = 0.43
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 509 TPLILAAHKNNYEILKILL 527
T ++ N ++ +IL
Sbjct: 148 TAFDISIDNGNEDLAEILQ 166
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 39.4 bits (93), Expect = 0.003
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA + + +++++L GA
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGA 271
Score = 39.0 bits (92), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL A +YE+ ++LL GA
Sbjct: 93 VPLHNACSYGHYEVTELLLKHGA 115
Score = 39.0 bits (92), Expect = 0.004
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA KN E+ +LL GA
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGA 148
Score = 38.6 bits (91), Expect = 0.006
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L AA + + ++LL G+
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGS 304
Score = 38.2 bits (90), Expect = 0.008
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA N I+++LL GA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGA 82
Score = 35.5 bits (83), Expect = 0.050
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 509 TPLILAA---HKNNYEILKILLDRGA 531
T L A H ++ ++LL +GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGA 238
Score = 35.2 bits (82), Expect = 0.072
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
+ + +A E L + L
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLL 183
Score = 30.2 bits (69), Expect = 2.1
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 506 KDITPLILAAHKNNY-EILKILLDRGA 531
L+ AA N +++ +L
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNV 49
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 38.7 bits (91), Expect = 0.003
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDV 539
TPL LA + + +L T + +
Sbjct: 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Score = 38.7 bits (91), Expect = 0.004
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA N +++ +LL GA
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGA 175
Score = 38.3 bits (90), Expect = 0.005
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L LA+ I+++L+ GA
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGA 141
Score = 36.4 bits (85), Expect = 0.021
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P L + + I + L
Sbjct: 186 SPYQLTWGRPSTRIQQQLGQLTL 208
Score = 36.4 bits (85), Expect = 0.022
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA N EI + LL G
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGC 69
Score = 31.0 bits (71), Expect = 1.1
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 10/41 (24%)
Query: 495 EKVDKNTSMFTKDITPLILAAHKNN----YEILKILLDRGA 531
+++ ++ + L LA E+++ + A
Sbjct: 2 QQLTED------GDSFLHLAIIHEEKALTMEVIRQVKGDLA 36
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 37.8 bits (89), Expect = 0.004
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P+ AA + LK+L++ GA
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGA 92
Score = 33.9 bits (79), Expect = 0.065
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
++E + LL E + +++ T L + + I LL +GA
Sbjct: 15 VQEVRRLLHRELVHP----DALNRF------GKTALQVMMF-GSTAIALELLKQGA 59
Score = 31.2 bits (72), Expect = 0.48
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 509 TPLILAAHKNNYEILKILLD 528
TPL LA + +++ IL
Sbjct: 135 TPLELALQRGAQDLVDILQG 154
Score = 30.8 bits (71), Expect = 0.78
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 509 TPLILAAHKNNYEILKILL 527
P+ LA + + ++ L
Sbjct: 103 LPIHLAVQEGHTAVVSFLA 121
Score = 30.5 bits (70), Expect = 0.86
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 506 KDITPLILAAHKNNYEILKILLDR-GA 531
+ L AA + + + ++ LL R
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELV 27
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 38.6 bits (91), Expect = 0.004
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P+ AA + L+ L+ +G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGW 27
Score = 38.6 bits (91), Expect = 0.004
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LA +K LL+ GA
Sbjct: 136 TPLYLACENQQRACVKKLLESGA 158
Score = 38.2 bits (90), Expect = 0.005
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P+ AA + + E + L+ G
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGG 125
Score = 38.2 bits (90), Expect = 0.006
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL A + E+ +L+D GA
Sbjct: 168 SPLHAVARTASEELACLLMDFGA 190
Score = 37.8 bits (89), Expect = 0.008
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL A +++ + +LL GA
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGA 93
Score = 37.4 bits (88), Expect = 0.010
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 505 TKD-ITPLILAAHKNNYEILKILLDRGA 531
T D ++PL A + +KILL GA
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILLKHGA 60
Score = 34.7 bits (81), Expect = 0.065
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+ +++I K++L
Sbjct: 232 RIRKCFGIQQHHKITKLVLPEDL 254
Score = 30.9 bits (71), Expect = 1.1
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
P+ L ++ + ++ L+R
Sbjct: 201 RPVELVPPES--PLAQLFLEREG 221
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 38.7 bits (90), Expect = 0.004
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 17/55 (30%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
+ +L+ +K D T L A + EI++ LL G
Sbjct: 24 ERILA----------DKSLATR----TDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Score = 36.8 bits (85), Expect = 0.016
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 497 VDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
++ S +I LA E+ + +L +
Sbjct: 1 MEGCVS----NIMICNLAYSGKLDELKERILADKS 31
Score = 33.3 bits (76), Expect = 0.18
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
+PL +AA EI+K LL +GA +
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHV 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 38.0 bits (89), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L AA K +I+++LL +GA
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGA 164
Score = 37.6 bits (88), Expect = 0.007
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 24/84 (28%)
Query: 472 TPL-------TLEEKKYLLSVE--------RGDTA------TSWEKVDKNTSMFTKDI-- 508
+ L E DT + + + +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI 73
Query: 509 -TPLILAAHKNNYEILKILLDRGA 531
PL AA + N L+ LD
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRV 97
Score = 36.1 bits (84), Expect = 0.024
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+A + +LK A
Sbjct: 175 LAFDMATNAACASLLKKKQGTDA 197
Score = 33.0 bits (76), Expect = 0.20
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 509 TPLILAAHKNNYEILKILLD-RGA 531
T L A H + +I+++L
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNI 131
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 38.2 bits (89), Expect = 0.005
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL LAA + EI + +L R
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREF 245
Score = 37.1 bits (86), Expect = 0.013
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 480 KYLLSVERGDTATSWEKVDKNTSMFTKDI---TPLILAAHKNNYEILKILLDRGA 531
LL + D + K N + + L +A K + + +K+L++ GA
Sbjct: 63 MPLLQI---DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Score = 36.7 bits (85), Expect = 0.019
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 480 KYLLS----VERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
K L+ V ++K F + PL LAA ++++ LL+
Sbjct: 107 KLLVENGADVHLRACGRFFQKHQGTCFYFGE--LPLSLAACTKQWDVVTYLLENPH 160
Score = 30.1 bits (68), Expect = 2.3
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 12/62 (19%)
Query: 480 KYLLSVERGDTATSWEKVDKN----------TSMFTKDITPLILAAHKNNYEILKILLDR 529
YLL S E D + + + + L++ + ++ L
Sbjct: 153 TYLLE--NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210
Query: 530 GA 531
Sbjct: 211 VQ 212
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 38.1 bits (88), Expect = 0.008
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +AA N I+ LLD GA
Sbjct: 285 TCLNIAARLGNISIVDALLDYGA 307
Score = 36.9 bits (85), Expect = 0.017
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL N E++K L+ G+
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGS 155
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 31.1 bits (70), Expect = 1.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +N E LK+LL A
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKA 229
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 30.7 bits (69), Expect = 1.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L AA N + LK+LL A
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRA 250
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 30.2 bits (68), Expect = 2.0
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 8 VIGKKNQM-WERRL---MKNF-QLTPVVTAEDEVELVRNVEPAENEDPLDRFRRVAKLAV 62
+G K + W + + MK F +T V +L N++ +D +
Sbjct: 39 GLGNKGVLPW-KCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKK 97
Query: 63 LNSTVI-GKKNQMWE 76
L + V+ G+ N WE
Sbjct: 98 LQNVVVMGRTN--WE 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 30.1 bits (67), Expect = 2.3
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 24/102 (23%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL---------PMPHDVRCGCDTCLRESNEDSLRHSM 559
PL A + + + L RGA L P+ + LR +
Sbjct: 270 GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI-----VTLLRLAK 324
Query: 560 SRVNEYRALASPSLIALSSNDPILTAFQLSWELRNLAFTEPE 601
R E A T + + +A +PE
Sbjct: 325 MREAE----------AAQGQAGDETYLDIFRDFSLMASDDPE 356
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 30.0 bits (67), Expect = 3.0
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 513 LAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRAL---- 568
+ + ++ + +++ G + +R L+ +L + S + +
Sbjct: 114 ILSREHR-PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA 172
Query: 569 -ASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRN 604
A P I L + Q W L N+A + R+
Sbjct: 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
>2ckz_A DNA-directed RNA polymerase III 18 KD polypeptide; multiprotein
complex, nucleotidyltransferase, nuclear protein,
hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Length = 161
Score = 29.1 bits (64), Expect = 3.6
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 13/146 (8%)
Query: 519 NYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRALASPSLIALSS 578
+YE+LK L D L H L++S ++ E + + + LS
Sbjct: 13 DYEVLKFLTD----LEKKHLWDQKSLAALKKSRSKGKQNRPYNHPELQGITRNVVNYLSI 68
Query: 579 NDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQELLTVLNHDP 638
N + E + + E + + L E L ++N P
Sbjct: 69 NKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLP 128
Query: 639 ETPYEEGEPMKLTRLELAIDYKQKRF 664
L ++ RF
Sbjct: 129 ANMVH---------LYSIVEECDARF 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 29.1 bits (65), Expect = 5.9
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 9/49 (18%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL---------PMPHDVRCGCDTCLR 548
T L AA N + LK+LL A + + + C
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 6.4
Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 26/52 (50%)
Query: 350 DCYSTMSSTGALNPS--EDPNWEEHDAACSK---------------WRSFNN 384
+C P E E D C+ WR+F+N
Sbjct: 26 EC-------KVYPPKIVERF--SEGDVVCALCGLVLSDKLVDTRSEWRTFSN 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,900,225
Number of extensions: 661871
Number of successful extensions: 1465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 285
Length of query: 707
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 607
Effective length of database: 3,909,693
Effective search space: 2373183651
Effective search space used: 2373183651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)