RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7028
(707 letters)
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 38.7 bits (88), Expect = 7e-04
Identities = 14/133 (10%), Positives = 36/133 (27%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRHSMSRVNEYRAL 568
L+ AA + ++IL+ GA + + + + A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 569 ASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQ 628
L A + L++ A + + L + ++++
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123
Query: 629 ELLTVLNHDPETP 641
+ + +T
Sbjct: 124 ADVHTQSKFCKTA 136
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 37.8 bits (86), Expect = 0.002
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLP 534
TPL A + N + ++L GA P
Sbjct: 227 TPLGSALLRPNPILARLLRAHGAPEP 252
Score = 36.2 bits (82), Expect = 0.009
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 6/38 (15%)
Query: 494 WEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ V ++ T L LA + L LL A
Sbjct: 2 FGYVTED------GDTALHLAVIHQHEPFLDFLLGFSA 33
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 38.0 bits (87), Expect = 0.004
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 508 ITPLILAAHKNNYEILKILLDRGA 531
+TPL +A+ + I+K LL RGA
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRGA 24
Score = 36.1 bits (82), Expect = 0.014
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL +AA + E+ K LL A
Sbjct: 35 TPLHMAARAGHTEVAKYLLQNKA 57
Score = 35.0 bits (79), Expect = 0.029
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+PL AA + + +I+ +LL GA
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGA 354
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTC 546
TPL AA + ++K+LL+ A +
Sbjct: 68 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105
Score = 28.4 bits (62), Expect = 2.9
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 1/133 (0%)
Query: 510 PLILAAHKNNYEILKILLDRGATLPMP-HDVRCGCDTCLRESNEDSLRHSMSRVNEYRAL 568
PL +AA + ++LL+R A + + +N D ++ + R +
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194
Query: 569 ASPSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYMELRKQCQQFAVDLLQQSRSTQ 628
A L L+ E L Q+ +++ S Q
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 254
Query: 629 ELLTVLNHDPETP 641
+ N TP
Sbjct: 255 ANGNLGNKSGLTP 267
Score = 28.4 bits (62), Expect = 3.6
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 471 PTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRG 530
TPL L ++ + + N S +TPL L A + + + +L+ G
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKS----GLTPLHLVAQEGHVPVADVLIKHG 287
Query: 531 ATLPMPHD 538
+
Sbjct: 288 VMVDATTR 295
Score = 28.0 bits (61), Expect = 4.4
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 509 TPLILAAHKNNYEI---LKILLDRGATLPM 535
TPL +A + LK++ D + + +
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVLV 394
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 37.3 bits (85), Expect = 0.004
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L +AA N I+ LLD GA
Sbjct: 261 TCLNIAARLGNISIVDALLDYGA 283
Score = 35.4 bits (80), Expect = 0.021
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL N E++K L+ G+
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGS 131
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 37.3 bits (85), Expect = 0.005
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
T L+LA +I ++L RGA
Sbjct: 255 TALLLAVELKLKKIAELLCKRGA 277
Score = 34.9 bits (79), Expect = 0.024
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+D LI A + ++++ LL+ GA
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGA 29
Score = 31.9 bits (71), Expect = 0.26
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSLRH 557
T L+ AA K + E+LKILLD D + D
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Score = 27.6 bits (60), Expect = 4.9
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 497 VDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTC 546
+ N TPL A + +I+++LL GA +
Sbjct: 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL 78
Score = 27.6 bits (60), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 509 TPLILAAHKNNYEILKILLDRG 530
TPLILA K + +++ LL++
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQE 242
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 34.5 bits (77), Expect = 0.018
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 509 TPLILAAHKNNYEILKILLDRG 530
T LA E++ ++ G
Sbjct: 135 TACDLARLYGRNEVVSLMQANG 156
Score = 31.8 bits (70), Expect = 0.16
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
L AA + + E L LL
Sbjct: 3 NELASAAARGDLEQLTSLLQNNV 25
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 35.1 bits (79), Expect = 0.022
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TP++LAA + E++ L+ +GA
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGA 245
Score = 31.2 bits (69), Expect = 0.40
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDS 554
T L A ++ E + L+ A + G D + +E++
Sbjct: 35 TVLHWIASNSSAEKSEDLIVHEA----KECIAAGADVNAMDCDENT 76
Score = 29.3 bits (64), Expect = 1.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 509 TPLILAAHKNNYEILKILL 527
T LA N++ I+ I
Sbjct: 256 TARQLAQANNHHNIVDIFD 274
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 35.3 bits (80), Expect = 0.024
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 476 LEEKKYLLSVERGDTATSWEKVDKNTSMFTKDITPLILAAHKNNYEILKILLD 528
L++ ++LLS+ + + L LA N +LL
Sbjct: 292 LDDIRFLLSIPGIKALAPTATIPGD------ANELLRLALRLGNQGACALLLS 338
Score = 31.4 bits (70), Expect = 0.34
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 506 KDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESNEDSL 555
++ LAA + +L L + T M + L
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 174
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 154
Score = 33.8 bits (76), Expect = 0.025
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHD 538
TPL +A + ++L + H
Sbjct: 116 TPLDIAKRLKHEHCEELLTQALSGRFNSHV 145
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 34.7 bits (78), Expect = 0.030
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 494 WEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ D N TPL AAH E +IL++
Sbjct: 220 QARYDVNI-KDYDGWTPLHAAAHWGKEEACRILVENLC 256
Score = 32.4 bits (72), Expect = 0.15
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 507 DITPLILAAHKNNYEILKILLDRGA 531
D + A + E + LL+RGA
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGA 64
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 34.2 bits (78), Expect = 0.059
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 41 NVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELR 100
+ AE E L ++A+ AV +G + + + + L E+ E+R
Sbjct: 522 RLGTAEIESALVAHPKIAEAAV-----VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576
Query: 101 KQCQQ 105
++
Sbjct: 577 NWVRK 581
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 221
Score = 32.6 bits (72), Expect = 0.13
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
+P L + + I + L
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTL 202
Score = 26.4 bits (56), Expect = 10.0
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 509 TPLILAAHKNNY----EILKILLDRGA 531
+ L LA E+++ + A
Sbjct: 4 SFLHLAIIHEEKALTMEVIRQVKGDLA 30
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 118
Score = 31.0 bits (68), Expect = 0.17
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTC 546
+ A + + +K + +G + +
Sbjct: 4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHY 41
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 31.3 bits (69), Expect = 0.19
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 509 TPLILAAHKNNYEILKILLD 528
TPL LA + +++ IL
Sbjct: 135 TPLELALQRGAQDLVDILQG 154
Score = 26.7 bits (57), Expect = 7.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLP 534
L AA + + + ++ LL R P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHP 29
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 130
Score = 30.8 bits (68), Expect = 0.23
Identities = 3/35 (8%), Positives = 16/35 (45%)
Query: 509 TPLILAAHKNNYEILKILLDRGATLPMPHDVRCGC 543
L+ ++ + +++++ ++ +P+D
Sbjct: 3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 37
Score = 27.3 bits (59), Expect = 3.5
Identities = 1/25 (4%), Positives = 5/25 (20%)
Query: 509 TPLILAAHKNNYEILKILLDRGATL 533
+ + + L +
Sbjct: 105 ADKCEEMEEGYTQCSQFLYGVQEKM 129
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 30.9 bits (68), Expect = 0.44
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
PL A +N + ++ LL
Sbjct: 2 YPLHQACMENEFFKVQELLHSKP 24
Score = 28.6 bits (62), Expect = 2.3
Identities = 20/206 (9%), Positives = 49/206 (23%), Gaps = 20/206 (9%)
Query: 330 LSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAACSKWRSFNNLFESS 389
L ++ L + + + + S + + + +
Sbjct: 38 LHWSVSFQAHEITSFLLSKMENVNLDDYP---DDSGWTPFHIACSVGNLEVVKSLYDRPL 94
Query: 390 QSLFWASFGSTGTDKFELKGIKSYTRFWGLLMFGSYSVINVIVLLNLLIAMMSNSYAMIE 449
+ T G K + L+ G+ I L S +
Sbjct: 95 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 154
Query: 450 VGVEIEGPGIVHTQPFD----MPNLPTPLTLEEKKYLLSVERGDTATSWEKVDKNTSMFT 505
+ G V+ Q + + + L+ + + VD
Sbjct: 155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY----DLVDNK----- 205
Query: 506 KDITPLILAAHKNNYEILKILLDRGA 531
+A ++ ++ K L+
Sbjct: 206 -GAKAEDVALNE---QVKKFFLNNVV 227
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 29.9 bits (65), Expect = 0.50
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 509 TPLILAAHKNNYEILKILLD 528
P+ LA + ++ + L
Sbjct: 104 LPVDLAEELGHRDVARYLRA 123
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 30.3 bits (67), Expect = 0.66
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 509 TPLILAAHKNNYEILKILLDRGA 531
TPL AA KN +EI +LL+ GA
Sbjct: 105 TPLHYAASKNRHEIAVMLLEGGA 127
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 29.8 bits (65), Expect = 1.0
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 494 WEKVDKNTSMFTKDITPLILAAHKNNYEILKILLDRGA 531
+ + + L A+ + +++ L+ GA
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA 201
Score = 29.4 bits (64), Expect = 1.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 509 TPLILAAHKNNYEILKILLD 528
TPL +A + N + L++
Sbjct: 5 TPLHIAVVQGNLPAVHRLVN 24
Score = 27.5 bits (59), Expect = 4.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 509 TPLILAAHKNNYEILK 524
TPL++A + +IL+
Sbjct: 212 TPLMVARSRRVIDILR 227
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 28.2 bits (61), Expect = 2.7
Identities = 4/18 (22%), Positives = 13/18 (72%)
Query: 509 TPLILAAHKNNYEILKIL 526
P +A+ + +++I+++L
Sbjct: 191 LPRDVASERLHHDIVRLL 208
Score = 27.4 bits (59), Expect = 4.3
Identities = 13/55 (23%), Positives = 19/55 (34%)
Query: 497 VDKNTSMFTKDITPLILAAHKNNYEILKILLDRGATLPMPHDVRCGCDTCLRESN 551
+ N +M T L LAA + K LLD GA + ++
Sbjct: 13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
{Enterobacter aerogenes [TaxId: 548]}
Length = 271
Score = 27.8 bits (60), Expect = 4.2
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 457 PGIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATSW 494
PG VH P+ + L L+ + G+ S+
Sbjct: 213 PGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSY 250
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 27.7 bits (60), Expect = 6.1
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 41 NVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELR 100
V E E+ L V A ++ +Q R E++ LR
Sbjct: 439 KVAAEEVENHLLAHPAVHDAA-----MVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLR 493
Query: 101 KQC 103
++
Sbjct: 494 ERG 496
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 27.6 bits (60), Expect = 6.7
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 41 NVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVEL-EL 99
VE E E L + +++ A V K+ + L +E + L +L
Sbjct: 423 RVELEEVESILLKHMYISETA-----VSVHKDHQEQPYLCA------YFVSEKHIPLEQL 471
Query: 100 RKQCQQ 105
R+ +
Sbjct: 472 RQFSSE 477
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 26.3 bits (58), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 29 VVTAEDEVELVRNVEPAENED 49
VVT DE EL R +E E E+
Sbjct: 91 VVTDTDETELARQMERLEREN 111
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 27.1 bits (58), Expect = 9.0
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 571 PSLIALSSNDPILTAFQLSWELRNLAFTEPECRNEYME-------LRKQCQQFAVDLLQQ 623
L+ L + + LRNL F + E + + ++ +Q
Sbjct: 47 CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQ 106
Query: 624 SRSTQELLTVLNHDPETPYEEGEPMKLTRL 653
L+ + E + P+ R+
Sbjct: 107 LTGLLWNLSSTDELKEELIADALPVLADRV 136
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 27.2 bits (59), Expect = 9.0
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 41 NVEPAENEDPLDRFRRVAKLAVLNSTVIGKKNQMWERRLMKNFQLTPVVTAEDEVELELR 100
V PAE E L + + ++ V G + L T ++ E+
Sbjct: 445 QVAPAELESILLQHP-----NIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK---EIV 496
Query: 101 KQCQQ 105
Sbjct: 497 DYVAS 501
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,659,337
Number of extensions: 125719
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 54
Length of query: 707
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,144,436
Effective search space: 703828140
Effective search space used: 703828140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)