RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7029
(125 letters)
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 100 bits (251), Expect = 4e-27
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 27/123 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTGAS GIGAA+ RAL +G +V+G AR
Sbjct: 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVG------------------------- 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
E+ + + D++ + +++ F I ++ +D+ INNAG+
Sbjct: 68 --NIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPD 125
Query: 123 PVT 125
+
Sbjct: 126 TLL 128
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 88.0 bits (219), Expect = 9e-23
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 28/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ V+TGAS GIG AI RALA G+ + AR + + E + +++ +G
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRL---EKIAH---ELMQEQGV---- 52
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+V +DV+K V E + +FG +DV++ NAG+ F
Sbjct: 53 ------------------EVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFK 94
Query: 123 PV 124
+
Sbjct: 95 RL 96
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 87.6 bits (218), Expect = 2e-22
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M K+I++TGAS GIG I R L G +++ ARR I E++ +I A G
Sbjct: 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARI---EAIAT---EIRDAGG--- 53
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ +DVT V + +G IDV++NNAGV
Sbjct: 54 --------------------TALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMP 93
Query: 121 FAPV 124
+P+
Sbjct: 94 LSPL 97
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 86.9 bits (216), Expect = 4e-22
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 32/119 (26%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
MS + +TGA+ G G A R A G +
Sbjct: 20 MSSTLFITGATSGFGEACARRF-------------------------------AEAGWSL 48
Query: 61 IGFARRAEMIDAMAKE-NPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ RR E + A+A E + +V L +DV A + A D + +F + +INNAG+
Sbjct: 49 VLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL 107
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 86.6 bits (215), Expect = 8e-22
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 32/121 (26%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
K +++TGAS GIG A + ++
Sbjct: 32 AKKTVLITGASAGIGKATALEYLEASN----------------------------GDMKL 63
Query: 61 IGFARRAEMIDAMAKE----NPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNA 116
I ARR E ++ + K P+ KVH ++D+T+ ++ + + +F ID+++NNA
Sbjct: 64 ILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA 123
Query: 117 G 117
G
Sbjct: 124 G 124
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 86.3 bits (214), Expect = 1e-21
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
KII++TGAS G G ALA GH+V R +
Sbjct: 4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRN-------------------- 43
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
A E I A++N + +L++DV V A D I + G IDV+I+NAG
Sbjct: 44 ---ASNVEAIAGFARDNDV-DLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMV 99
Query: 121 FAPV 124
F P
Sbjct: 100 FGPA 103
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 84.5 bits (210), Expect = 2e-21
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 33/124 (26%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M +++TGAS GIG A R L AKG++V
Sbjct: 4 MKGAVLITGASRGIGEATARLL-------------------------------HAKGYRV 32
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
AR + + A+A E L DV ++ + A + FG + ++NNAGV
Sbjct: 33 GLMARDEKRLQALAAELEG--ALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGV 90
Query: 121 FAPV 124
PV
Sbjct: 91 MKPV 94
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 85.0 bits (211), Expect = 2e-21
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 35/124 (28%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M K++V+TGAS GIG AI R + +GH +
Sbjct: 15 MKKLVVITGASSGIGEAIARRF-------------------------------SEEGHPL 43
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ ARR E + A+ +VDVT A +G D ++NNAG+
Sbjct: 44 LLLARRVERLKALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML 99
Query: 121 FAPV 124
+
Sbjct: 100 LGQI 103
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 83.3 bits (207), Expect = 5e-21
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TGAS GIG A RALAA+G V ARR E + +L ++ AA
Sbjct: 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKL---RALGD---ELTAAGA----- 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
KVH L++DV V A G +D+++NNAG+
Sbjct: 57 ------------------KVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLG 98
Query: 123 PV 124
PV
Sbjct: 99 PV 100
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 81.1 bits (201), Expect = 4e-20
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 26/122 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ ++TGAS GIGA I LA G++V+ AR + E + +I+ + H
Sbjct: 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQN---LEKVHD---EIMRSNKHVQ-- 59
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ L +D+T + I+ K+G +D+++N A +
Sbjct: 60 ------------------EPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDG 101
Query: 123 PV 124
+
Sbjct: 102 SL 103
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 81.2 bits (201), Expect = 5e-20
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 30/120 (25%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M K+I+VTG S GIG +I+ L + + V
Sbjct: 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTV-----------------------------V 31
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
G AR + + ++ D + + D+T+D+ + + + G ID ++ NAGV E
Sbjct: 32 YGVARSEAPLKKLKEKYGD-RFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLE 90
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 81.0 bits (201), Expect = 5e-20
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 32/115 (27%)
Query: 4 IIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIGF 63
I++VTGA+ G G I R +GH+VI
Sbjct: 2 IVLVTGATAGFGECITRRF-------------------------------IQQGHKVIAT 30
Query: 64 ARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
RR E + + E D ++ ++DV A + E + ++ +ID+++NNAG+
Sbjct: 31 GRRQERLQELKDELGD-NLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGL 84
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 80.7 bits (200), Expect = 5e-20
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M I+++TGA GIG AI A +
Sbjct: 1 MKHILLITGAGKGIGRAIALEFARAARHH------------------------PDFEPVL 36
Query: 61 IGFARRAEMIDAMAKE--NPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ +R A ++ ++ E ++ D++ A+V I ++GHID ++NNAGV
Sbjct: 37 VLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGV 96
Query: 119 NEFAPV 124
F +
Sbjct: 97 GRFGAL 102
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 78.8 bits (195), Expect = 3e-19
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 32/122 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
I+VTGA G+G A+ L +GHQV RR + + G+ VIG
Sbjct: 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQ----------QQELLLGNAVIG 53
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
D+ +V AF G +++++ AG EF
Sbjct: 54 IV----------------------ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFG 91
Query: 123 PV 124
PV
Sbjct: 92 PV 93
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 77.7 bits (192), Expect = 1e-18
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 32/123 (26%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+K+ +VTGAS G G AI A A G VIG ARR E +D D+VAA +
Sbjct: 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALD----------DLVAAYPDR-- 52
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
++ +DVT + + ++G +DV++NNAG +
Sbjct: 53 --------------------AEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQV 92
Query: 122 APV 124
Sbjct: 93 GAF 95
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 76.4 bits (189), Expect = 2e-18
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 36/122 (29%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
KI VVTGA+ G+G I++ L+ H V
Sbjct: 6 KIAVVTGATGGMGIEIVKDLSR--------------------------------DHIVYA 33
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R E + A+A+ V ++ D+ K+ D + H+D +++ A V
Sbjct: 34 LGRNPEHLAALAEIE---GVEPIESDIVKEVLEEGGVDKL-KNLDHVDTLVHAAAVARDT 89
Query: 123 PV 124
+
Sbjct: 90 TI 91
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 74.6 bits (184), Expect = 2e-17
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++ A GIG R L + + R E
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE------------------------- 40
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEA-FDWINNKFGHIDVMINNAGV 118
+ + NP + DVT + I ++ +D++IN AG+
Sbjct: 41 ---NPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI 94
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 74.5 bits (184), Expect = 2e-17
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ VVTGAS GIGAAI R L + G +V+ AR E ++ + A G +
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEK---LRAV----EREIVAAGGEAES 82
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A D++ + + G DV++NNAGV
Sbjct: 83 HA----------------------CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGV 116
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 72.7 bits (179), Expect = 1e-16
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 28/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++VTGAS GIG + LA G V+ AR E
Sbjct: 29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE------------------------- 63
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + + E H + + + G +D++I N N
Sbjct: 64 ---TLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSL 120
Query: 123 PV 124
+
Sbjct: 121 NL 122
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 71.9 bits (177), Expect = 2e-16
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VTG S GIG A+ R LAA+G V G AR A+ + VD + A GH V G
Sbjct: 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKN---VSAA----VDGLRAAGHDVDG 77
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ DVT EV A +FG I +++N+AG N
Sbjct: 78 SS----------------------CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGG 115
Query: 123 PV 124
Sbjct: 116 ET 117
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 71.8 bits (177), Expect = 2e-16
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGA GIG I + LA VI +R + +S+ VD + + G++ G
Sbjct: 45 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS---CDSV----VDEIKSFGYESSG 97
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ DV+K E+ E + I + ++D+++NNAG+
Sbjct: 98 Y----------------------AGDVSKKEEISEVINKILTEHKNVDILVNNAGI 131
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 71.1 bits (175), Expect = 3e-16
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTGA+ GIG I R L +G +V AR E + + + G + G
Sbjct: 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEG---LRTT----LKELREAGVEADG 75
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
DV E+ + ++G +DV++NNAG
Sbjct: 76 R----------------------TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRP 110
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 71.0 bits (175), Expect = 4e-16
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 29/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TGAS GIG + A A G QV AR ++ + D +A G
Sbjct: 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVV-------ADEIAGVGG---- 81
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
K ++ DVT+ +V D + + G ID+ + NAG+
Sbjct: 82 ------------------KALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQ 123
Query: 123 P 123
Sbjct: 124 A 124
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 70.3 bits (173), Expect = 4e-16
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 35/122 (28%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+IV+TGAS G+GA + + A+G +
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATY---------------------LTG-------- 32
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R + + + V D+ EV + F+ + ++++AG F
Sbjct: 33 --RSESKLSTVTNCLSN-NVGYRARDLASHQEVEQLFEQL---DSIPSTVVHSAGSGYFG 86
Query: 123 PV 124
+
Sbjct: 87 LL 88
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 71.1 bits (175), Expect = 4e-16
Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ VTG+S GIG A+ A A G V + + AE + G
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAE-------HLQKTYGV---- 83
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+ K +++ V E FG IDV + NAGV
Sbjct: 84 ------------------HSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVT 122
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 70.6 bits (174), Expect = 4e-16
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTG++ GIG AI LA+ G VI E
Sbjct: 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGE------------------------- 42
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
RA+ + K H +++++ + + +AF+ I N ID+++NNAG+
Sbjct: 43 ---RAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 70.2 bits (173), Expect = 5e-16
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGAS GIG + ALA+KG V+G A AE + + KG + G
Sbjct: 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQAS---AEKF----ENSMKEKGFKARG 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
++++ + F I + ID+++NNAG+
Sbjct: 59 L----------------------VLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 71.1 bits (174), Expect = 5e-16
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VVTG + GIG I + L++ G V+ R
Sbjct: 13 RCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVT------------------------- 47
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAF-DWINNKFGHIDVMINNAGV 118
+ K + V ++DVT + + D+I FG +D+++NNAGV
Sbjct: 48 ---KGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGV 101
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 70.3 bits (173), Expect = 6e-16
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTGAS GIG AI LA +G VIG A AE + G + G
Sbjct: 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAG---AEGI----GAAFKQAGLEGRG 81
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
++V V + +FG ++V++NNAG+
Sbjct: 82 A----------------------VLNVNDATAVDALVESTLKEFGALNVLVNNAGI 115
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 70.3 bits (173), Expect = 7e-16
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 27/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VVTG S GIG A + L G V AR E
Sbjct: 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGE------------------------- 43
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R A+ + P ++ + DV +V + G +++NNAG +
Sbjct: 44 --RLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVS 101
Query: 123 PV 124
Sbjct: 102 TF 103
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 70.0 bits (172), Expect = 7e-16
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 30/124 (24%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+ + V GA IGA I + AA+G V R E L V + A G +++
Sbjct: 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEK---LAPL----VAEIEAAGGRIV 59
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+ +D + EV + + ++V I N G N
Sbjct: 60 ARS----------------------LDARNEDEVTAFLNAA-DAHAPLEVTIFNVGANVN 96
Query: 122 APVT 125
P+
Sbjct: 97 FPIL 100
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 70.0 bits (172), Expect = 1e-15
Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 32/117 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
KI +VTGA G+G A+ ALA G+ V RR + + + A G +
Sbjct: 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQ----------ETAAEIGDDALC 78
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
DVT V F KFG +DV+ NNAG
Sbjct: 79 VP----------------------TDVTDPDSVRALFTATVEKFGRVDVLFNNAGTG 113
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 70.0 bits (172), Expect = 1e-15
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 28/117 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I +VTG G+G I +AL+A+G+ V+ RR +++D A +I G+ V
Sbjct: 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLD------AAAGEIGGRTGNIVRA 87
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
DV +V F + +F +D+++NNAG N
Sbjct: 88 VV----------------------CDVGDPDQVAALFAAVRAEFARLDLLVNNAGSN 122
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 69.5 bits (171), Expect = 1e-15
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 29/124 (23%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M K+ +VTGA GIG AI L G V D A V
Sbjct: 1 MKKVALVTGAGQGIGKAIALRLVKDGFAVA------------------IADYNDATAKAV 42
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
A I+ ++KVDV+ +V A + G DV++NNAGV
Sbjct: 43 ------ASEINQAGG-----HAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAP 91
Query: 121 FAPV 124
P+
Sbjct: 92 STPI 95
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 69.5 bits (171), Expect = 1e-15
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 33/124 (26%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M++ ++VTG GIG I G +V + A+ A + +
Sbjct: 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK--RSAD---------FAKERPNL 49
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
F DV + + ++ K IDV++NNA
Sbjct: 50 FYF----------------------HGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGS 87
Query: 121 FAPV 124
+
Sbjct: 88 KGIL 91
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 69.6 bits (171), Expect = 2e-15
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTG + GIG AI++ L G V+ +R+ E + A
Sbjct: 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA-------------------- 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A+ + A +V ++ ++ + EV + FG I+ ++NN G +
Sbjct: 59 ----ADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLS 114
Query: 123 PV 124
P
Sbjct: 115 PA 116
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 69.0 bits (170), Expect = 2e-15
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 29/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +VTG++ G+G A LAA G +VI RA ++ + VD + KG+
Sbjct: 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAES-------VDTLTRKGY---- 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
H + DVT + + AF ++ + H+D++INNAG+
Sbjct: 59 ------------------DAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRK 100
Query: 123 P 123
P
Sbjct: 101 P 101
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 68.3 bits (168), Expect = 3e-15
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +VTG+S G+G AI L G ++ A ++ + A G V+
Sbjct: 6 KTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAS--TSLDAT----AEEFKAAGINVVV 59
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
K DV +V + FG ID+++NNAG+
Sbjct: 60 A----------------------KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 68.3 bits (168), Expect = 3e-15
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TG ++GIG AI +G +V+ + G +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEGAKVM------------------ITGRHSDVGEKA-- 46
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A+ + + + + D + + + FD FG + ++NNAG+
Sbjct: 47 ----AKSVGTPDQ------IQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNK 96
Query: 123 PVT 125
V
Sbjct: 97 SVE 99
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 68.3 bits (168), Expect = 3e-15
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 32/122 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
KI V+TGA+ GIG A + A+G +V RR +++D A +A G +G
Sbjct: 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAA----------IAEIGGGAVG 79
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++ D AE+ ++ + + G IDV+ NAG
Sbjct: 80 ----------------------IQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSML 117
Query: 123 PV 124
P+
Sbjct: 118 PL 119
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 68.4 bits (168), Expect = 4e-15
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 28/117 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K I+VTG + GIG A RA+AA G V R A D E + G +
Sbjct: 15 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA--DAVEVT----EKVGKEFGVKTKA 68
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+ + DV+ V + I+ G I +I NAGV+
Sbjct: 69 Y----------------------QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVS 103
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 68.3 bits (168), Expect = 4e-15
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTG + IG A + ALA G +VI M A V+ + +GH V
Sbjct: 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKA-------VEDLRMEGHDVSS 66
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+DVT V A ++ + G +D+++ AG+
Sbjct: 67 V----------------------VMDVTNTESVQNAVRSVHEQEGRVDILVACAGIC 101
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 67.9 bits (167), Expect = 4e-15
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K +VTG+S G+G A LA G+ + I +AR + A + + G +V+
Sbjct: 5 KCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA---ALET----AEEIEKLGVKVL 57
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
K +V + A++ E F I+ FG +DV +NNA
Sbjct: 58 VV----------------------KANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVL 95
Query: 122 APV 124
PV
Sbjct: 96 RPV 98
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 67.9 bits (167), Expect = 4e-15
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +VTGA+ GIG AI LAA G VI AE A+ G +
Sbjct: 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAK----------AAAASIGKKARA 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A D++ V F I G ID+++NNA +
Sbjct: 57 IA----------------------ADISDPGSVKALFAEIQALTGGIDILVNNASI 90
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 67.9 bits (167), Expect = 4e-15
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 28/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TGA+ GIGA I RA AA G +++ R +D A + G
Sbjct: 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAAR------RALGEQFGT---- 70
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
VH++ +D+ + E FG +DV++NNAG++
Sbjct: 71 ------------------DVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQ 112
Query: 123 PV 124
PV
Sbjct: 113 PV 114
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 68.4 bits (168), Expect = 4e-15
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 28/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +TG G+G + L++ G Q + +R+ +++ I + G++V
Sbjct: 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE------QISSQTGNKVHA 80
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
DV V + GH +++INNA N +
Sbjct: 81 IQ----------------------CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFIS 118
Query: 123 P 123
P
Sbjct: 119 P 119
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 68.0 bits (167), Expect = 5e-15
Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ VTG G+GAAI R L G V D + + G
Sbjct: 26 RVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN--DHVSTW----LMHERDAGRDFKA 79
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ VDV + + FG +DV+INNAG+
Sbjct: 80 Y----------------------AVDVADFESCERCAEKVLADFGKVDVLINNAGI 113
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 68.4 bits (168), Expect = 5e-15
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ ++VTG + GIG I A G V AR
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR------------------------- 76
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ A E V +++DV+ +A + + FG +DV+ NAG+
Sbjct: 77 ---ELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGI 129
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 67.5 bits (166), Expect = 5e-15
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGAS GIG AI LA +G +VIG A I G G
Sbjct: 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ----------AISDYLGDNGKG 59
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
++VT + I ++FG +D+++NNAG+
Sbjct: 60 M----------------------ALNVTNPESIEAVLKAITDEFGGVDILVNNAGI 93
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 68.2 bits (167), Expect = 5e-15
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 30/118 (25%)
Query: 2 SKIIVVTGASVGIGAAILRALAAK-GHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
+ +VTG + GIG AI+R L V+ AR +G
Sbjct: 4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT------------------RGQAA 45
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ + E + H L D+ + D++ ++G +DV++NNAG+
Sbjct: 46 V---------QQLQAEGLSPRFHQL--DIDDLQSIRALRDFLRKEYGGLDVLVNNAGI 92
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 68.0 bits (167), Expect = 5e-15
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTGA+ GIG AI R A+G V R + + +I A G V
Sbjct: 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLK----------EIAADLGKDVFV 77
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
F +++ + + + + ID+++NNAG+
Sbjct: 78 F----------------------SANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 67.5 bits (166), Expect = 6e-15
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 30/118 (25%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
S ++VVTGAS GIG AI +L G +V + +AR A+ AE + + A G Q
Sbjct: 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA---AEEV----SKQIEAYGGQA 53
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
I F DV+K+A+V + +G IDV++NNAG+
Sbjct: 54 ITF----------------------GGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGI 89
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 67.5 bits (166), Expect = 6e-15
Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 26/116 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+II+VTGAS GIG A G VI R E + + I G Q
Sbjct: 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEK---LRQVAS---HINEETGRQPQW 66
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
F L + + I + +D +++NAG+
Sbjct: 67 FI--------------------LDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGL 102
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 68.2 bits (167), Expect = 6e-15
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 35/127 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++++TG S GIG + LA+ ++ +V
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASD----------------------------PSQSFKVYA 34
Query: 63 FARRAEMIDAMAKE-----NPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
R + + + P + +L++DV V A + + G +DV++ NAG
Sbjct: 35 TLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV--TEGRVDVLVCNAG 92
Query: 118 VNEFAPV 124
+ P+
Sbjct: 93 LGLLGPL 99
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 67.5 bits (166), Expect = 7e-15
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTG S G+G I + LA G V+ +R E A + G
Sbjct: 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA------QKLTEKYGV---- 71
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + + DV+ EV + + + KFG +D ++N AG+N
Sbjct: 72 ------------------ETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRH 113
Query: 123 P 123
P
Sbjct: 114 P 114
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 67.6 bits (166), Expect = 7e-15
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 27/117 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGA+ GIG A AL KG +V VD G Q
Sbjct: 8 KVALVTGAAQGIGRAFAEALLLKGAKVA------------------LVDWNLEAGVQCK- 48
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
A+ ++ K ++ DV ++ + F + + FG +D+++NNAGVN
Sbjct: 49 --------AALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN 97
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 67.6 bits (166), Expect = 8e-15
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
+ +++VTG S GIGAA+ R A +G +V + +A E A+++ V + G +
Sbjct: 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREA---ADAV----VAAITESGGEA 78
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ DV A++ F ++ +FG +D ++NNAG+ +
Sbjct: 79 VAI----------------------PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVD 116
Query: 121 FA 122
+
Sbjct: 117 YP 118
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 67.2 bits (165), Expect = 8e-15
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 28/115 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ ++T + G+G + L AKG+ V E++ + ++
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT--TAMETM----KETYKDVEERLQF 61
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
+ DVTK ++ + + + FG ID +INNAG
Sbjct: 62 V----------------------QADVTKKEDLHKIVEEAMSHFGKIDFLINNAG 94
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 67.8 bits (166), Expect = 8e-15
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 27/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VTG + G+G ++R L +G +V R +
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQD------------------------- 43
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + + E +V +++DV A D + +FG + ++ NNAGVN F
Sbjct: 44 --SIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQ 101
Query: 123 PV 124
P+
Sbjct: 102 PI 103
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 67.1 bits (165), Expect = 9e-15
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K++V+TG+S G+G ++ A + +V + + + + A S+ ++ + G + I
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDE---ANSV----LEEIKKVGGEAI 60
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
K DVT +++V+ +FG +DVMINNAG+
Sbjct: 61 AV----------------------KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENP 98
Query: 122 APV 124
Sbjct: 99 VSS 101
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 67.2 bits (165), Expect = 9e-15
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I VTG GIG +I + L G +V+ ++ A G
Sbjct: 14 RIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNS--PRRVKW----LEDQKALGFDFYA 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ +V +AFD + + G IDV++NNAG+
Sbjct: 68 S----------------------EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI 101
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 67.2 bits (165), Expect = 9e-15
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ V+TG+S GIG AI A +G ++ AR+ + + A + G +V+
Sbjct: 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR------SLKEKFGVRVLE 61
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A VDV V + + + FG D+++NNAG
Sbjct: 62 VA----------------------VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNE 99
Query: 123 PV 124
+
Sbjct: 100 TI 101
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 67.3 bits (165), Expect = 1e-14
Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 28/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +TG GIG I G + +R + A + A G + +
Sbjct: 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAA------RKLAGATGRRCLP 81
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ +DV V+ A D +FG ID++IN A N
Sbjct: 82 LS----------------------MDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLC 119
Query: 123 PV 124
P
Sbjct: 120 PA 121
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 66.7 bits (164), Expect = 1e-14
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VT ++ GIG AI R LA G V+ +R+ E +D V + +G V G
Sbjct: 15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRT-------VATLQGEGLSVTG 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
V K + N G +D++++NA VN
Sbjct: 68 TV----------------------CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVN 102
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 66.7 bits (164), Expect = 1e-14
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 32/118 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +VTGAS GIG +I LA +G+ V +
Sbjct: 5 KSALVTGASRGIGRSIALQLAEEGYNV------------------------------AVN 34
Query: 63 FARRAEMIDAMAKENPDW--KVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+A E +A+ +E +++ +V EV + ++FG +DV++NNAG+
Sbjct: 35 YAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 66.8 bits (164), Expect = 1e-14
Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 27/124 (21%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
MSK+ +VTG + GIG I LAA G + A + + A + ++ A +
Sbjct: 1 MSKVAMVTGGAQGIGRGISEKLAADGFDIA-VADLPQQEEQAAET----IKLIEAADQKA 55
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ +DVT A A D K G DV++NNAG+ +
Sbjct: 56 VFV----------------------GLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQ 93
Query: 121 FAPV 124
P+
Sbjct: 94 IKPL 97
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 66.8 bits (164), Expect = 1e-14
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K I+VTGA+ GIG A L A +G ++ R ++ + VAA + I
Sbjct: 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLL----------AEAVAALEAEAIA 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
DV+ V F +FG + + + AGV
Sbjct: 57 V----------------------VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGV 90
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 66.7 bits (164), Expect = 1e-14
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 32/118 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGAS GIG AI LA +G V V+
Sbjct: 5 KVALVTGASRGIGRAIAIDLAKQGANV------------------------------VVN 34
Query: 63 FARRAEMIDAMAKENPDW--KVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+A + + + E +++ DV +V + FG +D+++NNAGV
Sbjct: 35 YAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 67.0 bits (164), Expect = 1e-14
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 12/123 (9%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+ +VTGA+ +G +I L A+G+ V + + R A A +L A + A + + I
Sbjct: 10 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE---ANALSA---TLNARRPNSAI 63
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
D VT E +G DV++NNA
Sbjct: 64 TVQ-----ADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP 118
Query: 122 APV 124
P+
Sbjct: 119 TPL 121
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 66.8 bits (164), Expect = 1e-14
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 39/123 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTG S GIG A++ AL G +V+ V + V
Sbjct: 15 KVAIVTGGSSGIGLAVVDALVRYGAKVV------------------SVSLDEKSDVNVSD 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
K+DVT + EV EA + K+G ID+++NNAG+ +++
Sbjct: 57 H---------------------FKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYS 95
Query: 123 PVT 125
P+
Sbjct: 96 PLH 98
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 66.4 bits (163), Expect = 1e-14
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTG+ GIG A ALA +G V+ AE AE++ + A G I
Sbjct: 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEA---AEAV----AKQIVADGGTAIS 62
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
VDV+ D +FG ID ++NNA +
Sbjct: 63 V----------------------AVDVSDPESAKAMADRTLAEFGGIDYLVNNAAI 96
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 66.8 bits (164), Expect = 1e-14
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 30/124 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+VTG S GIG AI+ LA G +V +R + +D ++I KG V G
Sbjct: 22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC-------LEIWREKGLNVEG 74
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKF-GHIDVMINNAGVNEF 121
D+ E + + + F G +++++NNAGV
Sbjct: 75 SV----------------------CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIH 112
Query: 122 APVT 125
Sbjct: 113 KEAK 116
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 66.4 bits (163), Expect = 1e-14
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 29/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K++++TG S G+G + A +G +V+ R E ++ A + Q++
Sbjct: 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEA-------KLEIEQFPGQILT 59
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++DV ++ + + I+ KFG ID++INNA N
Sbjct: 60 V----------------------QMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFIC 97
Query: 123 P 123
P
Sbjct: 98 P 98
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 66.4 bits (163), Expect = 2e-14
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 32/123 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TG + G+GA R A G +V+ D++ +G
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAGARVV------------------LADVLDEEGAAT-- 45
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A+E D +DVT + + + +FG +D ++NNAG++
Sbjct: 46 -----------ARELGD-AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGM 93
Query: 123 PVT 125
+
Sbjct: 94 FLE 96
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 67.1 bits (164), Expect = 2e-14
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+ +VTGA+ +G +I L A+G+ V + + R A A +L A + A + + I
Sbjct: 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAE---ANALSA---TLNARRPNSAI 100
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+A++ + VT E +G DV++NNA
Sbjct: 101 TV--QADLSNV---ATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP 155
Query: 122 APV 124
P+
Sbjct: 156 TPL 158
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 66.4 bits (163), Expect = 2e-14
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTGA+ GIG AI A G V+ ++E AE++ + G + IG
Sbjct: 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEG---AEAV----AAAIRQAGGKAIG 65
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+VT + ++FG I V++NNAG
Sbjct: 66 LE----------------------CNVTDEQHREAVIKAALDQFGKITVLVNNAGGG 100
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 66.4 bits (163), Expect = 2e-14
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 32/123 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTG GIG A A G V+ D+ +V
Sbjct: 28 RVCIVTGGGSGIGRATAELFAKNGAYVV------------------VADVNEDAAVRV-- 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A I + K ++VDV+ + + K+G +DV++NNAG
Sbjct: 68 ----ANEIGS--------KAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTG 115
Query: 123 PVT 125
V
Sbjct: 116 NVV 118
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 66.1 bits (162), Expect = 2e-14
Identities = 31/116 (26%), Positives = 41/116 (35%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VVTG + GIG I A G V R ID A D+ +VIG
Sbjct: 11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADID------ACVADLDQLGSGKVIG 64
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ DV+ A+ +FG IDV+ NAGV
Sbjct: 65 V----------------------QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGV 98
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 65.6 bits (161), Expect = 3e-14
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 32/123 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +V+G + G+GA+ +RA+ A+G +V+ F DI+ +G +
Sbjct: 8 KVALVSGGARGMGASHVRAMVAEGAKVV------------------FGDILDEEGKAM-- 47
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A + A + +DVT+ A+ A D FG + V++NNAG+
Sbjct: 48 ----AAELADAA--------RYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIG 95
Query: 123 PVT 125
+
Sbjct: 96 TIE 98
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 65.6 bits (161), Expect = 3e-14
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 32/122 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +V G + G+G A +R L G +V+ R I G +V
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARI----------REEFGPRVHA 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
L+ D+ E+ G ID++ NAGV+E
Sbjct: 59 ----------------------LRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELE 96
Query: 123 PV 124
P
Sbjct: 97 PF 98
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 65.6 bits (161), Expect = 3e-14
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 32/123 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTG + G+G +++ L +G +V F DI A G Q+
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEGAKVA------------------FSDINEAAGQQL-- 46
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A E + + ++ DV+ +A+ + + G ++V++NNAG+
Sbjct: 47 -----------AAELGE-RSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPG 94
Query: 123 PVT 125
+
Sbjct: 95 DME 97
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 66.0 bits (162), Expect = 3e-14
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 32/123 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGA GIG A+ R LA +G V+ DI
Sbjct: 30 KVAIVTGAGAGIGLAVARRLADEGCHVL------------------CADIDGDAADAA-- 69
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A I A + +VDV+ + +++ D FG +D ++ NAGV A
Sbjct: 70 ----ATKIGCGA--------AACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLA 117
Query: 123 PVT 125
+
Sbjct: 118 SLI 120
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 65.7 bits (161), Expect = 3e-14
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 32/118 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I +VTGAS GIG AI LAA G +V +
Sbjct: 29 RIALVTGASRGIGRAIALELAAAGAKV------------------------------AVN 58
Query: 63 FARRAEMIDAMAKENPDW--KVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+A A D + + ++K DV++++EV F + ++G +DV++NNAG+
Sbjct: 59 YASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 65.7 bits (161), Expect = 3e-14
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 40/123 (32%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+++VTGAS+GIG AI +G +VI + I +
Sbjct: 9 KVVIVTGASMGIGRAIAERFVDEGSKVI------------------DLSIHDPGEAKYDH 50
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ DVT +V + D I ++G I V++NNAG+ +
Sbjct: 51 I----------------------ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYG 88
Query: 123 PVT 125
+
Sbjct: 89 KIE 91
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 65.7 bits (161), Expect = 3e-14
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K + +TGAS GIG AI A G V A+ A V A G Q +
Sbjct: 7 KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLA 66
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
LK D+ ++ +V A + FG ID+++NNA
Sbjct: 67 ----------------------LKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLR 104
Query: 123 PV 124
Sbjct: 105 GT 106
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 65.7 bits (161), Expect = 3e-14
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
KI +VTGAS GIG AI A A G ++ E++D + A G
Sbjct: 35 KIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRG-------MAAYKAAGI---- 83
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
H DVT + + I ++ G ID+++NNAG+
Sbjct: 84 ------------------NAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGI 121
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 65.2 bits (160), Expect = 4e-14
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+ ++TGAS GIG AI LA G + I + + E
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNRE------------------------ 37
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+AE + A+ V L ++ + G +D ++NNAG+
Sbjct: 38 ----KAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGI 90
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 65.8 bits (161), Expect = 4e-14
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 27/122 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K V+TG++ GIG AI R LA G ++ A D ++ ++ V+
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAP--DEIRTVTD---EVAGLSSGTVLH 80
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
D+TK +E+ + + ++FG D+++NNAGV
Sbjct: 81 H----------------------PADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVE 118
Query: 123 PV 124
+
Sbjct: 119 KI 120
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 65.7 bits (161), Expect = 4e-14
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTG GIG I RALAA G + + + + ++ G +VI
Sbjct: 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA--EGVAPV----IAELSGLGARVIF 83
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ D+ + D + +FG ID ++NNAG+
Sbjct: 84 L----------------------RADLADLSSHQATVDAVVAEFGRIDCLVNNAGI 117
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 65.2 bits (160), Expect = 4e-14
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 32/122 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TG++ GIG A A +G V DI + Q
Sbjct: 9 KSALITGSARGIGRAFAEAYVREGATVA------------------IADIDIERARQA-- 48
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A I +++++DVT+ + A G +D+++NNA + + A
Sbjct: 49 ----AAEIGP--------AAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLA 96
Query: 123 PV 124
P+
Sbjct: 97 PI 98
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 65.3 bits (160), Expect = 4e-14
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 29/122 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I+++TGA GIG A +++ + G
Sbjct: 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKH------------------------G 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A + KVH+ VD + ++ + + + G + +++NNAGV +
Sbjct: 68 LEETAAKCKGLGA-----KVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTS 122
Query: 123 PV 124
+
Sbjct: 123 DL 124
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 65.3 bits (160), Expect = 4e-14
Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGA IG A LA +G + +D+ +
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEEGTAIA------------------LLDMNREALEKA-- 47
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ E S DVT + V+ D + FG ID + NNAG
Sbjct: 48 ----EASVREKGVE-----ARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 94
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 65.2 bits (160), Expect = 4e-14
Identities = 28/121 (23%), Positives = 39/121 (32%), Gaps = 32/121 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
VTGA GIG I RA AA G AR +I
Sbjct: 12 ACAAVTGAGSGIGLEICRAFAASG------AR-------------------------LIL 40
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R A +D A+E + DVT + A + +++N+AG+
Sbjct: 41 IDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLH 99
Query: 123 P 123
Sbjct: 100 D 100
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 65.2 bits (160), Expect = 5e-14
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 30/124 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+VTG S GIG I+ LA+ G V +R + ++ + +KG +V
Sbjct: 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDC-------LTQWRSKGFKVEA 62
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKF-GHIDVMINNAGVNEF 121
D++ +E E + + N F G +++++NNAG+ +
Sbjct: 63 SV----------------------CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIY 100
Query: 122 APVT 125
Sbjct: 101 KEAK 104
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 65.2 bits (160), Expect = 5e-14
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 29/121 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TGA GIG I A G V+ DI A + V
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVV------------------VSDINADAANHV-- 51
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ I + + + + D+T + E+ D+ +K G +D+++NNAG
Sbjct: 52 ----VDEIQQLGG-----QAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK 102
Query: 123 P 123
P
Sbjct: 103 P 103
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 65.3 bits (160), Expect = 5e-14
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 26/122 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TG+S GIG A +G V + + +
Sbjct: 7 KTVIITGSSNGIGRTTAILFAQEGANVT------------------ITGRSSERLEET-- 46
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++I + +V+S+ DVT + + + +FG IDV++NNAG
Sbjct: 47 ----RQIILKSGV--SEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPD 100
Query: 123 PV 124
Sbjct: 101 AF 102
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 65.4 bits (160), Expect = 5e-14
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 22/122 (18%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K + ++G S GIG AI + +AA G V A+ AE + G Q +
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALP 69
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ D+ V A +FG ID+ +NNA
Sbjct: 70 ----------------------IVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLG 107
Query: 123 PV 124
+
Sbjct: 108 SI 109
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 65.3 bits (160), Expect = 5e-14
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 26/122 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TG+S GIG A A +G +V A + +
Sbjct: 7 KVAIITGSSNGIGRATAVLFAREGAKVT------------------ITGRHAERLEET-- 46
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ I A V+S+ DVT DA E KFG +D+++NNAG
Sbjct: 47 ----RQQILAAGVSEQ--NVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 100
Query: 123 PV 124
Sbjct: 101 SQ 102
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 64.8 bits (159), Expect = 5e-14
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 28/125 (22%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
MS++ +VTGAS G G AI A+G +V +D+ A +
Sbjct: 1 MSRVAIVTGASSGNGLAIATRFLARGDRVA------------------ALDLSAETLEET 42
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
A + ++ DV + +V A +FG IDV++NNAG+
Sbjct: 43 ARTHWHAYADKVLR----------VRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITG 92
Query: 121 FAPVT 125
+
Sbjct: 93 NSEAG 97
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 64.9 bits (159), Expect = 6e-14
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 26/122 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+IV+ G +GA + A + ++ +A+ D A L D + +G +V
Sbjct: 12 KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKL----KDELEDQGAKVAL 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + D++ + EV + FD+ +FG +D+ IN G
Sbjct: 68 Y----------------------QSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKK 105
Query: 123 PV 124
P+
Sbjct: 106 PI 107
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 65.6 bits (160), Expect = 6e-14
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 22/122 (18%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +TGAS GIG AI A G ++ A+ A+ + + A G + +
Sbjct: 46 CTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALP 105
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
VDV + ++ A + KFG ID+++NNA
Sbjct: 106 ----------------------CIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLT 143
Query: 123 PV 124
Sbjct: 144 NT 145
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 64.9 bits (159), Expect = 6e-14
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 26/117 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++I+VTGA+ GIGAA RA AA G V+ R + I +A Q +
Sbjct: 15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEAS---LAEVSD---QIKSAGQPQPLI 68
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
A L ++ + E + ++FG +D +++NA +
Sbjct: 69 IA--------------------LNLENATAQQYRELAARVEHEFGRLDGLLHNASII 105
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 64.7 bits (158), Expect = 6e-14
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 33/122 (27%)
Query: 1 MS-KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
MS +VVTGA+ GIG +++ L +
Sbjct: 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIR-----------------------------H 31
Query: 60 VIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFG--HIDVMINNAG 117
+I AR E + +VH L + VT D + + G + ++INNAG
Sbjct: 32 IIATARDVEKATELKSIKDS-RVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAG 90
Query: 118 VN 119
V
Sbjct: 91 VL 92
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 64.9 bits (159), Expect = 7e-14
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ +VTGAS GIGAAI LA+ G V I +A +A AE + + A G + +
Sbjct: 28 KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAA---AEEV----AGKIEAAGGKAL 80
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+ DV+ A V F FG +DV++NNAG+
Sbjct: 81 TA----------------------QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPL 118
Query: 122 APV 124
+
Sbjct: 119 TTI 121
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 64.9 bits (159), Expect = 7e-14
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ ++TGA GIG A ALAA G V R E + D + G Q I
Sbjct: 29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTE---VEEV----ADEIVGAGGQAIA 81
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+ DV+ + ++ A + KFGH+D+++ NAG+N
Sbjct: 82 L----------------------EADVSDELQMRNAVRDLVLKFGHLDIVVANAGIN 116
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 64.4 bits (158), Expect = 7e-14
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 35/123 (28%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++VTG + GIG AI +A A +G V R E + AE++ F
Sbjct: 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFF------------ 54
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+VD+ + E V + G +DV++NNA +
Sbjct: 55 -----------------------QVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPG 91
Query: 123 PVT 125
Sbjct: 92 SAL 94
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 64.5 bits (158), Expect = 8e-14
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 23/117 (19%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTGA GIG A+ LA +G V A+ V ++ G +
Sbjct: 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAA---AQET----VRLLGGPGSKEGP 60
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHI-DVMINNAGV 118
+ + DV++ + + F V+++ AG+
Sbjct: 61 PRGNH---------------AAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 64.4 bits (158), Expect = 8e-14
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 37/123 (30%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+VTGA GIG ++AL A G A+ V+
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASG------AK-------------------------VVA 36
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R + ++AKE P + + VD+ +A G +D+++NNA +
Sbjct: 37 VTRTNSDLVSLAKECP--GIEPVCVDLGDWDATEKALG----GIGPVDLLVNNAALVIMQ 90
Query: 123 PVT 125
P
Sbjct: 91 PFL 93
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 64.5 bits (158), Expect = 9e-14
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 40/118 (33%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
MS+ ++VTG + GIG AI RA A G +V R E +
Sbjct: 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-------------------- 59
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
++K D+T +V +A+ I G ++V+I NAGV
Sbjct: 60 --------------------GFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV 97
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 64.5 bits (158), Expect = 9e-14
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 32/122 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTG S GIGAAI RAL G V
Sbjct: 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM------------------------A 48
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++ +++VDVTK A V A + G D++ NAGV+
Sbjct: 49 AQAVVAGLENGG--------FAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMR 100
Query: 123 PV 124
P
Sbjct: 101 PA 102
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 64.1 bits (157), Expect = 1e-13
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 34/116 (29%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TGA+ GIG A L A +G +++
Sbjct: 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEG------------------------P 41
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
AE + A + +DV A V F G +D +++ AG+
Sbjct: 42 LREAAEAVGAHP----------VVMDVADPASVERGFAEALAHLGRLDGVVHYAGI 87
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 64.0 bits (157), Expect = 1e-13
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 31/122 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ V+TG + GIG AI A +G + A + G +V+
Sbjct: 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVP-----APEA----EAAIRNLGRRVLT 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
K DV++ +V + + FG D+++NNAG+
Sbjct: 59 V----------------------KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLI 96
Query: 123 PV 124
P
Sbjct: 97 PF 98
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 64.0 bits (157), Expect = 1e-13
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 37/123 (30%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ ++VTGA GIG ++AL A G AR V+
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATG------AR-------------------------VVA 36
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+R +D++ +E P + + VD+ A G +D+++NNA V
Sbjct: 37 VSRTQADLDSLVRECP--GIEPVCVDLGDWEATERALG----SVGPVDLLVNNAAVALLQ 90
Query: 123 PVT 125
P
Sbjct: 91 PFL 93
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 64.1 bits (157), Expect = 1e-13
Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 30/121 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I +VTG S GIG I + L G +V AR AE ++A G
Sbjct: 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT-------ATRLSAYG----- 77
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++ D++ +A + +D+++NNAG + A
Sbjct: 78 ------------------DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGA 119
Query: 123 P 123
Sbjct: 120 A 120
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 64.1 bits (157), Expect = 1e-13
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+++++TG G+G A LAA+G ++ VD+ +
Sbjct: 14 RVVLITGGGSGLGRATAVRLAAEGAKLS------------------LVDVSSEGLEAS-- 53
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ A PD +V + DV+ +A+V +FG ID NNAG+
Sbjct: 54 ----KAAVLETA---PDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGI 102
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 64.1 bits (157), Expect = 1e-13
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 29/116 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+++VTGA GIG AI + A V+ + + V + G +V+G
Sbjct: 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDR---LNQI----VQELRGMGKEVLG 60
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
K DV+K +V E + IDV+ NNAG+
Sbjct: 61 V----------------------KADVSKKKDVEEFVRRTFETYSRIDVLCNNAGI 94
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 63.8 bits (156), Expect = 1e-13
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 35/124 (28%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVI--GFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
K +VTG++ GIG I + LA G ++ GF A + +A G +
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPA-----------LAEIARHGVKA 53
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ D++ A++ F +FG +D+++NNAG+
Sbjct: 54 VHH----------------------PADLSDVAQIEALFALAEREFGGVDILVNNAGIQH 91
Query: 121 FAPV 124
APV
Sbjct: 92 VAPV 95
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 64.1 bits (157), Expect = 1e-13
Identities = 30/127 (23%), Positives = 41/127 (32%), Gaps = 35/127 (27%)
Query: 3 KIIVVTGASV--GIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
K++VVTGAS G+G R A G V
Sbjct: 21 KVVVVTGASGPKGMGIEAARGCAEMGAAV------------------------------A 50
Query: 61 IGFARRAEMIDAMAKE---NPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
I +A RA+ + KE K + K V + + FG ID I NAG
Sbjct: 51 ITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAG 110
Query: 118 VNEFAPV 124
+ +
Sbjct: 111 ATADSGI 117
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 63.7 bits (156), Expect = 1e-13
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TG+S GIG A R A G +V R+A + + + A G
Sbjct: 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAP--ANIDET----IASMRADGGDAAF 61
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
F D+ + D KFG IDV+INNAG
Sbjct: 62 F----------------------AADLATSEACQQLVDEFVAKFGGIDVLINNAGG 95
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 64.2 bits (157), Expect = 1e-13
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ +VTGA GIG + L +G +V + +A E AE + V + G
Sbjct: 30 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---AEEV----VAAIKKNGSDAA 82
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+K +V ++V F+ FG +D++ +N+GV F
Sbjct: 83 ----------------------CVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSF 120
Query: 122 APV 124
V
Sbjct: 121 GHV 123
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 63.7 bits (156), Expect = 2e-13
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 29/117 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K++V++G +G + R A +G ++ AR E E + V G + +
Sbjct: 12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVER---LEDV----AKQVTDTGRRALS 64
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
D+T DA+V D +G +DV+INNA
Sbjct: 65 VG----------------------TDITDDAQVAHLVDETMKAYGRVDVVINNAFRV 99
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 63.9 bits (156), Expect = 2e-13
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 41/123 (33%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
MSK I+V G S +GA +++ +K I +D
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTIS------------------IDFRENPN--- 59
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
HS + + + E+ + IN+K +D + AG
Sbjct: 60 --------------------ADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS 99
Query: 121 FAP 123
Sbjct: 100 GGN 102
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 63.7 bits (156), Expect = 2e-13
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 26/117 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTG GIG + L A G V+ R + + A
Sbjct: 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGA-------------------- 51
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+ ++A+ + D+T + E A D + G + +++ AG +
Sbjct: 52 ----VQELEALGANGG--AIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGS 102
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 63.4 bits (155), Expect = 2e-13
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 30/124 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ VVTGAS GIG I L G V R + + + G Q +
Sbjct: 6 QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVV-------AQEAQSLGGQCVP 58
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINN-KFGHIDVMINNAGVNEF 121
D ++++EV F+ ++ + G +DV++NNA
Sbjct: 59 VV----------------------CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQ 96
Query: 122 APVT 125
+
Sbjct: 97 TILN 100
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 63.4 bits (155), Expect = 2e-13
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 38/122 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K++V+TGAS GIGA ++RA + ++V+ +R + + +
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK----------------PSADPDIHT 72
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
D++K +FG ID ++NNAGV
Sbjct: 73 V----------------------AGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAK 110
Query: 123 PV 124
P
Sbjct: 111 PF 112
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 63.8 bits (156), Expect = 2e-13
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 32/121 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ ++TG + G+G A++ A+G +V + AE + ++ A G +G
Sbjct: 6 EVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLR----------ELEVAHGGNAVG 55
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ DV + A + FG ID +I NAG+ +++
Sbjct: 56 ----------------------VVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYS 93
Query: 123 P 123
Sbjct: 94 T 94
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 63.4 bits (155), Expect = 2e-13
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 31/124 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVI--GFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
K+ VVTG++ GIG I ALAA+G ++ GF AE+ + A G +V
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRA-------GLAAQHGVKV 57
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ D++K V D + G ID+++NNAG+
Sbjct: 58 LYD----------------------GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQH 95
Query: 121 FAPV 124
A +
Sbjct: 96 TALI 99
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 62.9 bits (154), Expect = 2e-13
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 40/118 (33%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
+S+ ++VTG + GIG AI + LAA GH+V R +
Sbjct: 14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------------- 53
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ ++VDVT V AF + G ++V+++NAG+
Sbjct: 54 --------------------GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL 91
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 62.9 bits (154), Expect = 2e-13
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 39/122 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K + VTGA GIG A A G +V GF + + +
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT-----------------QEQYPFAT 50
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+DV A+V + + + +D ++N AG+
Sbjct: 51 EV----------------------MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMG 88
Query: 123 PV 124
Sbjct: 89 AT 90
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 63.4 bits (155), Expect = 3e-13
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ +VTG+ GIGAA+ L G +V + +A + AE + V + A G
Sbjct: 19 KVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKD---AEKV----VSEIKALG---- 67
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
A I A D+ + E+V+ FD FGH+D+ ++N+GV F
Sbjct: 68 ---SDAIAIKA---------------DIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSF 109
Query: 122 APV 124
+
Sbjct: 110 GHL 112
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 63.3 bits (155), Expect = 3e-13
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K VTG S GIGAAI + LA +G V + + AE A+++ V + G + +
Sbjct: 32 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAER---AQAV----VSEIEQAGGRAV 84
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+++ D + +A G +D+++N+AG+
Sbjct: 85 ----------------------AIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHS 122
Query: 122 APV 124
AP+
Sbjct: 123 APL 125
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 62.9 bits (154), Expect = 3e-13
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 30/117 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
+ IVV GA IG A A +G V + + AE A + V + G +
Sbjct: 9 RTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEG---AATA----VAEIEKLGRSAL 61
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
K D+T AEV A +KFG I +++ AG
Sbjct: 62 AI----------------------KADLTNAAEVEAAISAAADKFGEIHGLVHVAGG 96
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 62.2 bits (152), Expect = 3e-13
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 40/120 (33%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIGFA 64
+++TGA+ G+G A RAL GH ++
Sbjct: 3 VLITGATGGLGGAFARALK---------------------------------GHDLLLSG 29
Query: 65 RRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAPV 124
RRA + +A+E +L D+ + E + + G +D++++ G A V
Sbjct: 30 RRAGALAELAREVG---ARALPADLADELEAKALLE----EAGPLDLLVHAVGKAGRASV 82
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 62.9 bits (154), Expect = 3e-13
Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 30/124 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++VTG + GIG AI+ A G + AR ++ + KG QV G
Sbjct: 15 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNEC-------LSKWQKKGFQVTG 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGH-IDVMINNAGVNEF 121
D + E + +++ FG +D++INN G
Sbjct: 68 SV----------------------CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRS 105
Query: 122 APVT 125
P
Sbjct: 106 KPTL 109
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 62.9 bits (154), Expect = 3e-13
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 29/123 (23%)
Query: 3 KIIVVTGASV-GIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+++VT A+ GIG+ R +G V+
Sbjct: 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER------------------------ 58
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
R + +V ++ DVT V K G +DV++NNAG+
Sbjct: 59 ----RLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQ 114
Query: 122 APV 124
PV
Sbjct: 115 TPV 117
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 63.0 bits (154), Expect = 3e-13
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +TGA+ G G A +AA+G +I VDI V
Sbjct: 12 RVAFITGAARGQGRAHAVRMAAEGADIIA------------------VDIAGKLPSCVPY 53
Query: 63 FARRAEMIDAMAK--ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
+ + + E + ++ + VD + + D G +D+++ NAGV
Sbjct: 54 DPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAA 113
Query: 121 FAPV 124
Sbjct: 114 PQAW 117
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 63.1 bits (154), Expect = 3e-13
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 36/124 (29%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ V+TGAS G G A+ LA + G ++
Sbjct: 7 AVCVLTGASRGFGRALAPQLARL----------------------------LSPGSVMLV 38
Query: 63 FARRAEMIDAMAKE----NPDWKVHSLKVDVTKDAEVVEAFDWINNKFG----HIDVMIN 114
AR M+ + +E PD KV D+ +A V + ++IN
Sbjct: 39 SARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLIN 98
Query: 115 NAGV 118
NA
Sbjct: 99 NAAT 102
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 62.9 bits (154), Expect = 3e-13
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 33/120 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K++VVTG GIGA I+RA G +V+ D + G +
Sbjct: 10 KVVVVTGGGRGIGAGIVRAFVNSGARVV------------------ICDKDESGGRAL-- 49
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
E+ A+ + DVT++ +V +FG +D ++NNAG +
Sbjct: 50 ---EQELPGAVF----------ILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPP 96
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 63.0 bits (154), Expect = 3e-13
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ + TGA GIG I L +G V + + ++ AE + V + G Q +
Sbjct: 22 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA---AEEV----VAELKKLGAQGV 74
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
+++ D++K +EVV FD + FG +D +++N+G+ +
Sbjct: 75 ----------------------AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVW 112
Query: 122 APV 124
Sbjct: 113 CDE 115
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 63.0 bits (154), Expect = 3e-13
Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 30/123 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TG + GIG + G +V+ DI G +V
Sbjct: 17 KVAIITGGAGGIGETTAKLFVRYGAKVV------------------IADIADDHGQKV-- 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
I + + DVTKD +V D K G +D+M N GV
Sbjct: 57 ----CNNI------GSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTT 106
Query: 123 PVT 125
P +
Sbjct: 107 PYS 109
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 62.6 bits (153), Expect = 4e-13
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
V+TG + IG +I L +G +V+ R +E A+ L A ++ AA+ +
Sbjct: 12 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE--GAAQRLVA---ELNAARAGSAVL 66
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVV----EAFDWINNKFGHIDVMINNAGV 118
K D++ + ++ + D FG DV++NNA
Sbjct: 67 C----------------------KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASA 104
Query: 119 NEFAPV 124
P+
Sbjct: 105 YYPTPL 110
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 63.1 bits (154), Expect = 5e-13
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 33/117 (28%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ VVTGA+ GIGA I A G V+
Sbjct: 214 KVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA------------------------- 248
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFG-HIDVMINNAGV 118
AE + +A + +L +DVT D V + + G +D+++NNAG+
Sbjct: 249 ----AEDLKRVADK---VGGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI 298
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 62.2 bits (152), Expect = 5e-13
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 34/122 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
I++TGAS +G L GH+VI R
Sbjct: 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEH------------------------- 62
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A E +L D + + ++ D + + + +++NA
Sbjct: 63 ---------ASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAE 113
Query: 123 PV 124
Sbjct: 114 TP 115
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 62.6 bits (153), Expect = 5e-13
Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 30/124 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
KI +VTGAS GIG A A +G +V+ AR L D +A G +
Sbjct: 9 KIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNA---LAEL----TDEIAGGGGEAAA 61
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV-NEF 121
DV +A + +FG +D NNAG
Sbjct: 62 L----------------------AGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAM 99
Query: 122 APVT 125
++
Sbjct: 100 GEIS 103
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 62.2 bits (152), Expect = 6e-13
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 35/117 (29%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+VT G L+ GH V + D E+ +
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP------------ 49
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
++ + E E + + + +G +DV+++N
Sbjct: 50 -----------------------QLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFA 83
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 62.2 bits (152), Expect = 7e-13
Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 31/123 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VVTGA GIG AI A G V+ + R + + A+ +A G
Sbjct: 32 RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADE--------IADGGG---- 79
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
++ D+ + + +DV++NNAG+ A
Sbjct: 80 ------------------SAEAVVADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARA 120
Query: 123 PVT 125
P
Sbjct: 121 PAE 123
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 62.3 bits (152), Expect = 8e-13
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 26/123 (21%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TG+S GIG + A +G QV + +
Sbjct: 27 KSVIITGSSNGIGRSAAVIFAKEGAQVT------------------ITGRNEDRLEET-- 66
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ I K++++ DVT+ + + + KFG ID+++NNAG N
Sbjct: 67 ----KQQILKAGVPAE--KINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 120
Query: 123 PVT 125
Sbjct: 121 GTA 123
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 61.8 bits (151), Expect = 9e-13
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 40/123 (32%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +VTGA+ GIG A++ AL A G +V D A +
Sbjct: 29 KVALVTGAAGGIGGAVVTALRAAGARVA------------------VADRAVAGIAADLH 70
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
D+ + A + G +D+++NNAGV
Sbjct: 71 LP----------------------GDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRG 108
Query: 123 PVT 125
+T
Sbjct: 109 RIT 111
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 61.8 bits (151), Expect = 1e-12
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +TGA+ G G + LAA+G +I DI A V
Sbjct: 16 RVAFITGAARGQGRSHAVRLAAEGADIIA------------------CDICAPVSASVTY 57
Query: 63 FARRAEMIDAMAK--ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
E +D A+ E+ K + +DV DA + E +FG +DV++ NAGV
Sbjct: 58 APASPEDLDETARLVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLS 117
Query: 121 FAPV 124
+ V
Sbjct: 118 WGRV 121
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 61.4 bits (150), Expect = 1e-12
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TGA G G + + A G +V+ VD A +V
Sbjct: 10 KVALITGAGSGFGEGMAKRFAKGGAKVV------------------IVDRDKAGAERV-- 49
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A I A ++ D++K+A+V A + +KFG +D+++NNAG+
Sbjct: 50 ----AGEIGDAA--------LAVAADISKEADVDAAVEAALSKFGKVDILVNNAGI 93
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 61.4 bits (150), Expect = 1e-12
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 36/116 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TGAS GIG+AI R L G +VI E
Sbjct: 15 KTSLITGASSGIGSAIARLLHKLGSKVIISGSNEE------------------------- 49
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ + + K+ ++ E K ++D+++ NAG+
Sbjct: 50 ---KLKSLGNALKD----NYTIEVCNLANKEECSNLIS----KTSNLDILVCNAGI 94
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 61.1 bits (149), Expect = 1e-12
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++ +VTGAS G+GAA+ R LA +G V+G D+ G
Sbjct: 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGL------------------DLKPPAG----- 44
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ A E V DVT +A+ A + +FGH+ ++N AG
Sbjct: 45 --------EEPAAELGA-AVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGT 91
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 61.0 bits (149), Expect = 2e-12
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 31/122 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +VTG++ GIG AI +L A+G V+ RR E ++
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVN---------------------- 48
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
E I + + PD + + D+ + + + K+ +D++INN G+ E
Sbjct: 49 -----ETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE----KYPKVDILINNLGIFEPV 99
Query: 123 PV 124
Sbjct: 100 EY 101
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 60.8 bits (148), Expect = 2e-12
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 29/122 (23%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VVTG + GIG A A +G +++ D+ Q
Sbjct: 32 RAAVVTGGASGIGLATATEFARRGARLV------------------LSDVDQPALEQA-- 71
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + H + DV E+V D G +DV+ +NAG+
Sbjct: 72 ----VNGLRGQGFD-----AHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAG 122
Query: 123 PV 124
P+
Sbjct: 123 PL 124
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 60.4 bits (147), Expect = 3e-12
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ V+TG + G+G A L +G + D+ + G
Sbjct: 13 LVAVITGGASGLGLATAERLVGQGASAVLL------------------DLPNSGG----- 49
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+A AK+ + DVT + +V A KFG +DV +N AG+
Sbjct: 50 --------EAQAKKLGN-NCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGI 96
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 60.2 bits (147), Expect = 3e-12
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 38/123 (30%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M + +VTG S GIG AI AL A+G++V +R E
Sbjct: 1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPE----------------------- 37
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNE 120
A+ + A+ L D+ + G + V+++ A VN
Sbjct: 38 ----EAAQSLGAVP----------LPTDLE-KDDPKGLVKRALEALGGLHVLVHAAAVNV 82
Query: 121 FAP 123
P
Sbjct: 83 RKP 85
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 59.5 bits (145), Expect = 5e-12
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 40/122 (32%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+VTG S GIG A++ L + + +
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQ------------------------- 39
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ + EN + +K D+TK ++ D I K D + NAG+
Sbjct: 40 ---------SFSAEN----LKFIKADLTKQQDITNVLDII--KNVSFDGIFLNAGILIKG 84
Query: 123 PV 124
+
Sbjct: 85 SI 86
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 59.6 bits (145), Expect = 6e-12
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 33/127 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
VVTGA+ IG AI L G++V I + AE A SL ++ + + +
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEA---AVSLAD---ELNKERSNTAV 77
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKD----AEVVEAFDWINNKFGHIDVMINNAG 117
+ D+T A E + FG DV++NNA
Sbjct: 78 VC----------------------QADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNAS 115
Query: 118 VNEFAPV 124
P+
Sbjct: 116 AFYPTPL 122
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 59.1 bits (144), Expect = 8e-12
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 32/121 (26%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ ++TGA GIG R LA G +V+ D+
Sbjct: 12 KVAIITGACGGIGLETSRVLARAGARVV------------------LADLPETDLAGA-- 51
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
A + A VD+T + V D+ + FG +D++ NNA ++ A
Sbjct: 52 ----AASVGRGA--------VHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPA 99
Query: 123 P 123
Sbjct: 100 D 100
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 59.3 bits (144), Expect = 8e-12
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 35/121 (28%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
I++TG + G+G +++AL +
Sbjct: 22 NSILITGCNRGLGLGLVKALLNL----------------------------PQPPQHLFT 53
Query: 63 FARRAEMID---AMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFG--HIDVMINNAG 117
R E +AK + + +H L++D+ + I ++V+ NNAG
Sbjct: 54 TCRNREQAKELEDLAKNHSN--IHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAG 111
Query: 118 V 118
+
Sbjct: 112 I 112
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 58.7 bits (143), Expect = 1e-11
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 38/122 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+I++T A+ GIG A A A +G +VI DI +K ++
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREGAKVI------------------ATDINESKLQEL-- 46
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ +DVTK ++ + + + +DV+ N AG
Sbjct: 47 ----EKYPGIQT----------RVLDVTKKKQIDQFAN----EVERLDVLFNVAGFVHHG 88
Query: 123 PV 124
V
Sbjct: 89 TV 90
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 58.4 bits (142), Expect = 2e-11
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ VTGA+ G G + LA +G +I +D + + A
Sbjct: 12 KVAFVTGAARGQGRSHAVRLAQEGADIIA-------VDICKP--------IRAGVVDTAI 56
Query: 63 FARRAEMIDAMAK--ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A E + A + + ++ + +VDV + A D + G +D+++ NAG+
Sbjct: 57 PASTPEDLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI 114
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 57.6 bits (140), Expect = 3e-11
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +TGA+ G G A LAA G +I VD+
Sbjct: 14 KVAFITGAARGQGRAHAVRLAADGADIIA------------------VDLCDQIASVPYP 55
Query: 63 FARRAEMIDAMAK-ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A E+ + E+ ++ + + DV + A ++ G +D+++ NAG+
Sbjct: 56 LATPEELAATVKLVEDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI 112
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 57.2 bits (139), Expect = 4e-11
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 19/117 (16%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +TGA+ G G + LA +G +I +D+ +
Sbjct: 29 KVAFITGAARGQGRSHAITLAREGADIIA------------------IDVCKQLDGVKLP 70
Query: 63 FARRAEMIDAMAK-ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ ++ + + + E ++ + +VDV + A D + G +D+++ NA +
Sbjct: 71 MSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 56.7 bits (138), Expect = 5e-11
Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 35/117 (29%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
I +VT A G A + AL G+ V+ D AE G
Sbjct: 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFA--DAAERQ----RFESENPG----- 50
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVN 119
+ + D ID +++N +
Sbjct: 51 ------------------------TIALAEQKPERLVDATLQHGEAIDTIVSNDYIP 83
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 56.8 bits (138), Expect = 6e-11
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 19/117 (16%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++TG + G+G + ALA G + D
Sbjct: 11 KTALITGGARGMGRSHAVALAEAGADIAI------------------CDRCENSDVVGYP 52
Query: 63 FARRAEMIDAMAK-ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A ++ + +A E + S KVDV A + + G ID+ I NAG+
Sbjct: 53 LATADDLAETVALVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGI 109
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 56.5 bits (137), Expect = 8e-11
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 19/123 (15%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ +TGA+ G G LA G ++ +D+ + +
Sbjct: 47 KVAFITGAARGQGRTHAVRLAQDGADIV------------------AIDLCRQQPNLDYA 88
Query: 63 FARRAEMIDAMAK-ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
E+ + + E ++ + + DV A + D +FGHID++++N G++
Sbjct: 89 QGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQ 148
Query: 122 APV 124
V
Sbjct: 149 GEV 151
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 56.1 bits (136), Expect = 9e-11
Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 27/121 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+I +TG++ GIGAA+ LA GH VIG R I+ D+ G
Sbjct: 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE---------ADLSTPGG----- 47
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R + A+ D V A + + V +N GV+
Sbjct: 48 ---RETAVAAVLDR----------CGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALL 94
Query: 123 P 123
Sbjct: 95 D 95
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 56.0 bits (136), Expect = 1e-10
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 28/115 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+ VVT S G+G A LA G +++ F+R E
Sbjct: 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNRE------------------------- 42
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
+ +A +V + D+ + ++ G D+++ + G
Sbjct: 43 --KLEAAASRIASLVSGAQVDIVAGDIR-EPGDIDRLFEKARDLGGADILVYSTG 94
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 56.1 bits (136), Expect = 1e-10
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 19/122 (15%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K+++VTG + G G + LA +G +I DI
Sbjct: 11 KVVLVTGGARGQGRSHAVKLAEEGADII------------------LFDICHDIETNEYP 52
Query: 63 FARRAEMIDAMAK-ENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEF 121
A ++ +A + E K ++ +VDV A V +FG +DV++ NAG+
Sbjct: 53 LATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPL 112
Query: 122 AP 123
Sbjct: 113 GA 114
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 55.0 bits (133), Expect = 1e-10
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 51/123 (41%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
I++ GAS +G+A+ L +VI
Sbjct: 4 MKILLIGASGTLGSAVKERLEK--------------------------------KAEVIT 31
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
R + + VD+T + + ++ + G +D +++ G F+
Sbjct: 32 AGRHSG---------------DVTVDITNIDSIKKMYE----QVGKVDAIVSATGSATFS 72
Query: 123 PVT 125
P+T
Sbjct: 73 PLT 75
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 55.8 bits (135), Expect = 1e-10
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 32/116 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+V+G + G+G A +R L A G V+ D+ A KG
Sbjct: 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIA------------------DLAAEKG----- 67
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A+A E + + + +VT + V+ A + N ++ + G
Sbjct: 68 --------KALADELGN-RAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGF 114
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 55.2 bits (134), Expect = 2e-10
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 36/129 (27%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV-IGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ +VTGAS GIG AI + LA G V I + R E AE V + + G
Sbjct: 8 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEE---AEET----VYEIQSNG---- 56
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKF------GHIDVMINN 115
A I A ++ V + ++N+ D++INN
Sbjct: 57 ---GSAFSIGA---------------NLESLHGVEALYSSLDNELQNRTGSTKFDILINN 98
Query: 116 AGVNEFAPV 124
AG+ A +
Sbjct: 99 AGIGPGAFI 107
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 54.2 bits (131), Expect = 4e-10
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ VVTG + G+G A + L G QV+ R E D+VA G +
Sbjct: 10 AVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE-------------DVVADLGDRARF 56
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
DVT +A V A D G + +++N AG
Sbjct: 57 A----------------------AADVTDEAAVASALDLAE-TMGTLRIVVNCAGT 89
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 52.5 bits (127), Expect = 2e-09
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 44/115 (38%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K ++V AS GIG A+ L+ +G +V AR E++ GH+ +
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL--------------KRSGHRYV- 64
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
D+ KD +++ K +D+++ NAG
Sbjct: 65 -----------------------VCDLRKDLDLLFE------KVKEVDILVLNAG 90
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 52.2 bits (126), Expect = 3e-09
Identities = 29/116 (25%), Positives = 42/116 (36%), Gaps = 36/116 (31%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +V+TGA+ G+GA R LA +G VI R KG
Sbjct: 17 RTVVITGANSGLGAVTARELARRGATVIMAVRDTR------------------KGEA--- 55
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
A +V ++D+ D V F + DV+INNAG+
Sbjct: 56 -----------AARTMAGQVEVRELDLQ-DLSSVRRF---ADGVSGADVLINNAGI 96
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 50.2 bits (121), Expect = 1e-08
Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 27/121 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
+ +VTG GIG A A A +G V AE D A+ + ++ G
Sbjct: 50 RKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEED-AQQV----KALIEECGR---- 100
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
K L D++ ++ G +D++ AG
Sbjct: 101 ------------------KAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAI 142
Query: 123 P 123
P
Sbjct: 143 P 143
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 50.0 bits (120), Expect = 2e-08
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 47/123 (38%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
IIV++G + GIGAA + L A GHQ++G R +++A
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA-------------EVIA-------- 40
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAF-DWINNKFGHIDVMINNAGVNEF 121
D++ +A D + +D ++ AG+
Sbjct: 41 -------------------------DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQ 75
Query: 122 APV 124
V
Sbjct: 76 TKV 78
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 48.0 bits (115), Expect = 7e-08
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 42/118 (35%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M + +VTG + G+G A AL A+G++V+ D+
Sbjct: 1 MERSALVTGGASGLGRAAALALKARGYRVVVL------------------DLRREGE--- 39
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ ++ DVT++ +V A + + +++ AGV
Sbjct: 40 --------------------DLIYVEGDVTREEDVRRAVARAQ-EEAPLFAVVSAAGV 76
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 46.5 bits (111), Expect = 2e-07
Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 37/122 (30%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
++V G +G+AIL G+ V+ A D A+S +
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN--DQADSNILVDGN----------- 50
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFA 122
+ T+ + + + + +D + AG
Sbjct: 51 ------------------------KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGG 86
Query: 123 PV 124
Sbjct: 87 SA 88
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 37/118 (31%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
++ ++V G +G+ ++A A+ V A +
Sbjct: 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN---------------EEASASVI 50
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+ T+ A+ V A +D ++ AG
Sbjct: 51 VKMT----------------------DSFTEQADQVTAEVGKLLGDQKVDAILCVAGG 86
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 43.9 bits (104), Expect = 3e-06
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 27/120 (22%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV----IGFARRAEMIDFAESLFAFFVDIVAAKGH 58
++++VTGA GIG A A AA+G +V IG + + +I AA G
Sbjct: 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG- 86
Query: 59 QVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
+A+A + +V + FG +DV++NNAG+
Sbjct: 87 ------------EAVA--DGS--------NVADWDQAAGLIQTAVETFGGLDVLVNNAGI 124
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 43.7 bits (104), Expect = 3e-06
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 28/116 (24%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K +++TG GIG A+ A A +G + A E D A V +G
Sbjct: 48 KNVLITGGDSGIGRAVSIAFAKEGANIA-IAYLDEEGD-ANET----KQYVEKEGV---- 97
Query: 63 FARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGV 118
K L D++ + + + G +++++NN
Sbjct: 98 ------------------KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQ 135
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 43.7 bits (103), Expect = 3e-06
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 3 KIIVVTGASVG-IGAAILRALAAKGHQVIGFARR--AEMIDFAESLFAFFVDIVAAKGHQ 59
K +++TGA G IGA +L+ L G +V+ R ++ D+ +S++A + AKG
Sbjct: 477 KYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKY----GAKGST 532
Query: 60 VI 61
+I
Sbjct: 533 LI 534
Score = 26.0 bits (57), Expect = 4.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 15/44 (34%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFAR-RAEMIDFAE 43
+ ++IVVTG + +G G AR R EM F E
Sbjct: 816 LERVIVVTGFA-EVGPW-------------GSARTRWEMEAFGE 845
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 42.3 bits (100), Expect = 8e-06
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIV--------AAK 56
I + G++ +G ++L++L+ +Q+ AR+ E + ++ A D+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH 62
Query: 57 GHQVIGFA 64
G I
Sbjct: 63 GMDAIINV 70
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 41.9 bits (98), Expect = 1e-05
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVD 51
I V GA+ G+AI+ +GH+V+ R + +
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLV 49
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 41.2 bits (97), Expect = 2e-05
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 1 MSKI--IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFA 42
M K+ IV+ GAS +G+A+L +G +V R E I
Sbjct: 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-05
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 19/116 (16%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQV------------IGFARRAE-MIDFAESLFAF 48
+K +++ G +G G + ++V + E +++ + L
Sbjct: 150 AKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 49 FVDIVAAKGHQVIGFARRAEMIDAMAKENPDWKVH--SLKV--DVTKDAEVVEAFD 100
++ R I A + K + L V +V ++A+ AF+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFN 263
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 40.7 bits (95), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAE 37
I + GA+ G+ IL +GH+V R A
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG 35
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 40.4 bits (95), Expect = 4e-05
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
V GA+ +G RA+ A GH ++ R + I L
Sbjct: 16 YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL 56
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 39.6 bits (93), Expect = 6e-05
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
+ KI + GA+ G L G++V R + S +V
Sbjct: 3 VKKI-AIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR---LPSEGPRPAHVVVG 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 8e-05
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 33/127 (25%)
Query: 10 ASVGIGAAILRALAAKGHQVIG--FA-----------RRAEMIDFAESLFAFFVDIVAAK 56
A + A L +KG FA A+++ V++V +
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL-----VEVVFYR 1789
Query: 57 GHQVIGFARRAEMID---AMAKENPDWKVHSLKVDVTKDAEVVEAF-DWINNKFGHIDVM 112
G + R E+ M NP +V + E ++ + + + G + V
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPG------RVAASFSQEALQYVVERVGKRTGWL-VE 1842
Query: 113 INNAGVN 119
I VN
Sbjct: 1843 I----VN 1845
Score = 32.3 bits (73), Expect = 0.029
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 48/139 (34%)
Query: 5 IVVTG--AS-VGIGAAILRALAAKGH--QV-IGFARRAEMIDFAESLFAFFVDIVAAKGH 58
+VV+G S G+ LR A Q I F+ R + F+ F+ + +
Sbjct: 377 LVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSERK--LKFSNR----FLPVASP--- 426
Query: 59 QVIGF-----ARRAEMIDA-MAKENPDWKVHSLKVDV--TKDAE---------------- 94
F +++I+ + K N + +++ V T D
Sbjct: 427 ----FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 95 -VVEAFDW---INNKFGHI 109
+ W K HI
Sbjct: 483 IIRLPVKWETTTQFKATHI 501
Score = 26.2 bits (57), Expect = 3.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 9 GASVGIGAAILRALAAKGHQVI 30
G + G+G R G +VI
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVI 528
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 39.0 bits (91), Expect = 1e-04
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 37/123 (30%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV----IGFARRAEMIDF--AESLFAFFVDIVAAK 56
++ VVTGA G+G A +G +V +G + A+ + +I A
Sbjct: 20 RVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVD---EIRKAG 76
Query: 57 GHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVE-AFDWINNKFGHIDVMINN 115
G +A+A + + V A+V+E A FG +D+++NN
Sbjct: 77 G-------------EAVA--DYN--------SVIDGAKVIETAIK----AFGRVDILVNN 109
Query: 116 AGV 118
AG+
Sbjct: 110 AGI 112
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 38.5 bits (89), Expect = 2e-04
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 1 MSKIIVVTGASVGIGAAILR-ALAAKGHQVIGFARRAEMIDFAESLFAFFVDIV------ 53
M I + GA+ I + L + + R+ + E + V ++
Sbjct: 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQN 63
Query: 54 ------AAKGHQVI------GFARRAEMIDAMAKENPDWKV 82
A +V+ + A ++ A+++ N +
Sbjct: 64 PGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVI 104
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
++V GA+ + +L L KGH+ + R E
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER 64
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 37.5 bits (87), Expect = 4e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 1 MS---KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAE 37
M+ K I V GA+ GA+++R AA GH V +
Sbjct: 1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK 40
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 37.4 bits (87), Expect = 6e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 5 IVVTGASVG-IGAAILRALAAKGHQVIGFARRAE 37
+ +TG+ G +G A+ L GH+VI R+
Sbjct: 150 VAITGSR-GLVGRALTAQLQTGGHEVIQLVRKEP 182
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 1 MSKI--IVVTGASVGIGAAILRALAAKGHQVIGFARRA 36
M I++ GA+ IG + +A GH R +
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 37.0 bits (86), Expect = 7e-04
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 37/123 (30%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQV----IGFARRAEMIDF--AESLFAFFVDIVAAK 56
++++VTGA G+G A A A +G V +G + A+ + +I
Sbjct: 10 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVE---EIRRRG 66
Query: 57 GHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVE-AFDWINNKFGHIDVMINN 115
G A+A N D V ++V+ A D FG IDV++NN
Sbjct: 67 G-------------KAVA--NYD--------SVEAGEKLVKTALD----TFGRIDVVVNN 99
Query: 116 AGV 118
AG+
Sbjct: 100 AGI 102
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 36.8 bits (85), Expect = 7e-04
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 MSKI--IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFA 42
M K +++ G + IG I+ A + GH R + +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID 44
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 37.0 bits (86), Expect = 8e-04
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 31/120 (25%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG 62
K++++TGA G+G A G +V+ + D +L + AA V
Sbjct: 9 KVVIITGAGGGLGKYYSLEFAKLGAKVV-------VNDLGGALNGQGGNSKAA--DVV-- 57
Query: 63 FARRAEMIDAM---AKENPDWKVHSLKVDVTKDAEVVE-AFDWINNKFGHIDVMINNAGV 118
+ I A + + +V ++VE A FG + V+INNAG+
Sbjct: 58 ----VDEIVKNGGVAVADYN--------NVLDGDKIVETAVK----NFGTVHVIINNAGI 101
Score = 29.3 bits (66), Expect = 0.36
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 37/119 (31%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K++++TGA G+G + A G +V+ A +I AA G
Sbjct: 322 DKVVLITGAGAGLGKEYAKWFAKYGAKVV-----VNDFKDATKTVD---EIKAAGG---- 369
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAE--VVEAFDWINNKFGHIDVMINNAGV 118
+A + DV KD+E + D K+G ID+++NNAG+
Sbjct: 370 ---------EAWP----------DQHDVAKDSEAIIKNVID----KYGTIDILVNNAGI 405
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 36.1 bits (84), Expect = 0.001
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
M++ ++VTGA+ +G A+ + +G R F + V++
Sbjct: 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQ------VNL-------- 46
Query: 61 IGFARRAEMIDAMAKENPDWKVH 83
+ + P VH
Sbjct: 47 ---LDSNAVHHIIHDFQPHVIVH 66
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGF 32
M ++VTGA+ G+G+AI L H+V
Sbjct: 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLS 32
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 36.0 bits (83), Expect = 0.001
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRA 36
M I++ G + IG +++ GH F R
Sbjct: 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN 45
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 35.9 bits (82), Expect = 0.001
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGH-----QVIGFARRA 36
S + ++ G + IG ++ L +V G ARR
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRT 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 35.2 bits (81), Expect = 0.002
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 1 MSKIIVVTGASVGIG-----AAILRALAAKGHQVIGF 32
++ ++ + G + + A G + I
Sbjct: 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 35.2 bits (81), Expect = 0.002
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAK-GHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
M + ++ GA I ++ LA K + FAR+ + I+
Sbjct: 23 MKNV-LILGAGGQIARHVINQLADKQTIKQTLFARQPAK---IHKPYPTNSQIIMG 74
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 35.0 bits (80), Expect = 0.003
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRA 36
+++ GA+ IG + A AR
Sbjct: 13 VLIAGATGFIGQFVATASLDAHRPTYILARPG 44
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 34.9 bits (80), Expect = 0.004
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAE 37
K VV + +G LA +G +V+ R+ +
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 154
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 34.5 bits (79), Expect = 0.004
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRA 36
M KII+ G + IG ++RA + H +AR
Sbjct: 4 MEKIIIY-GGTGYIGKFMVRASLSFSHPTFIYARPL 38
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.1 bits (78), Expect = 0.006
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIG-F 63
I++ G + IG I+ A G+ R+ E+ + + + G
Sbjct: 5 ILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDI 64
Query: 64 ARRAEMIDAMA 74
++ A+
Sbjct: 65 NDHETLVKAIK 75
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 33.9 bits (78), Expect = 0.006
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1 MS-KIIVVTGASVG-IGAAILRALAAKGHQVIGFARRAE 37
MS I++ G G +G + R L A+GH+V G R A+
Sbjct: 1 MSLSKILIAGC--GDLGLELARRLTAQGHEVTGLRRSAQ 37
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.9 bits (77), Expect = 0.007
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 9/129 (6%)
Query: 1 MSKIIVV-TGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
+ + TG G ++ + G+ V+ +R ++ AA
Sbjct: 19 QGVVCIFGTGD---FGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSD 75
Query: 60 VIGFARRAEMIDAMAKENPDWK-----VHSLKVDVTKDAEVVEAFDWINNKFGHIDVMIN 114
VI A E D +A+ K S + + E + H+ N
Sbjct: 76 VIVLAVHREHYDFLAELADSLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFN 135
Query: 115 NAGVNEFAP 123
Sbjct: 136 TISAWALQS 144
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.8 bits (78), Expect = 0.007
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGF-----ARRAEMIDFAESLFAFF-VDIVA 54
M K+ +TG IG+ I L +G +V+G RR + D F I
Sbjct: 21 MKKV-FITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPN--LTFVEGSI-- 75
Query: 55 AKGHQVIGFARRAEMIDAMAKENPDWKVH 83
A A + + PD VH
Sbjct: 76 ---------ADHALVNQLIGDLQPDAVVH 95
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 33.8 bits (78), Expect = 0.008
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 5 IVVTGASVGIGAAILRALAAK--GHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
I VTGA+ +G +++ L K Q+I R E A +L V++
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK---ASTLADQGVEVRHG 52
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 33.4 bits (77), Expect = 0.010
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIG 31
K+ ++TG + IG+ +L L +V+G
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVG 56
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 33.3 bits (76), Expect = 0.011
Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 3 KIIVVTG-ASV-GIGAAILRALAAKGHQVI----GFARRAEMIDFAESLFAFFVDIVAAK 56
I + G G G I + L+ + ++I M ++ F + I K
Sbjct: 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDK 62
Query: 57 GHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMI 113
++ D + + K ++ + ++ ++ + + + I+ K+G I++++
Sbjct: 63 KMNILDMLPFDASFDTANDIDEETK-NNKRYNMLQNYTIEDVANLIHQKYGKINMLV 118
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 33.4 bits (77), Expect = 0.012
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
V+T + + I+ +G + I RR E I + +
Sbjct: 168 FVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDI 208
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 33.4 bits (77), Expect = 0.012
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGF 32
K ++TG + IG+ +L L VIG
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGL 55
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 32.8 bits (75), Expect = 0.014
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 2 SKIIVVTGASVGIG-----AAILRALAAKGHQVIGF 32
SK VTG +G A+L+A A G++ G+
Sbjct: 1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 33.0 bits (76), Expect = 0.014
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 5 IVVTGASVGIGAAILRALAAK--GHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
I +TGA+ +G ++ +L Q++ R A++L A + + A
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK---AQALAAQGITVRQA 51
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 33.0 bits (75), Expect = 0.018
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 3 KIIVVTGASVG-IGAAILRALAAKGHQVIGFARR--AEMIDFAESLFA 47
K ++TGA G IGA +L+ L + G +VI R ++ ++ + ++A
Sbjct: 653 KHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYA 700
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 32.7 bits (75), Expect = 0.018
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRA 36
M ++ +VTGA+ +G + LA +
Sbjct: 3 MKRL-LVTGAAGQLGRVMRERLAPMAEILRLADLSP 37
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure
initiative; 2.60A {Corynebacterium glutamicum atcc
13032}
Length = 341
Score = 32.7 bits (75), Expect = 0.020
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
+S+ + + G +G IG ++LR L A H V G+ R A + A
Sbjct: 7 ISRPVCILG--LGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEA 60
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 32.5 bits (75), Expect = 0.022
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 52 IVAAKGHQVIGFARRAEMIDAMAK--ENPDWKVHSLKVDVTKDAEVVEAFDWI 102
++ G +VI +ARR E++D + +P + + V T D E ++ D +
Sbjct: 32 MLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDIL 84
Score = 26.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 1 MSKIIVVTGA-SVGIGAAILRALAAKGHQVIGFARRAEMID 40
M V GA S G A + L G +VI +ARR E++D
Sbjct: 13 MEMRFFVLGAGSWGTVFAQM--LHENGEEVILWARRKEIVD 51
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 32.5 bits (75), Expect = 0.022
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGF 32
MS I VTG + G +G ++ ++ G+ I
Sbjct: 1 MSLKIAVTGGT-GFLGQYVVESIKNDGNTPIIL 32
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 32.3 bits (74), Expect = 0.023
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 5 IVVTGASVGIGAAILRALAAKG-HQVIGFARRAEMIDFAESLFAFFVDIVAA 55
I++TGA+ +G I A R E + V +
Sbjct: 3 IMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEK---VPDDWRGKVSVRQL 51
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 32.4 bits (74), Expect = 0.023
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 3 KIIVVTGASVGIG-----AAILRALAAKGHQVIGF 32
I+VVTG G+G AA+ A G V
Sbjct: 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61
>3of5_A Dethiobiotin synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, ligase;
1.52A {Francisella tularensis subsp}
Length = 228
Score = 32.4 bits (74), Expect = 0.023
Identities = 3/37 (8%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 1 MSKIIVVTGASVGIG-----AAILRALAAKGHQVIGF 32
K + G +G ++ + + +
Sbjct: 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 32.6 bits (74), Expect = 0.024
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 KIIVVTGASVG-IGAAILRALAAKGHQVIGFARR--AEMIDFAESLFA 47
K +++TGA G IGA +L+ L G +V+ R ++ D+ +S++A
Sbjct: 676 KYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYA 723
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 32.3 bits (73), Expect = 0.025
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 18 ILRALAAKGHQVI-----GFARRAEMIDFAESLFAFFVDIVAAKGHQ---VIGFARRAEM 69
I L +G V GF E L A+ ++AA G ++G ++
Sbjct: 33 IQEDLQQRGATVYVANLSGFQSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLT 92
Query: 70 IDAMAKENPDWKVHSL 85
+A PD V S+
Sbjct: 93 SRYVAAVAPDL-VASV 107
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 32.1 bits (74), Expect = 0.025
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGF 32
+ I++TG + G IG + RAL A G +V
Sbjct: 6 LKHRILITGGA-GFIGGHLARALVASGEEVTVL 37
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 32.4 bits (74), Expect = 0.026
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 1 MS--KIIVVTGASVGIGAAILRALAAKG-HQVIGFARRAEMIDFAESLFAFFVDIVAA 55
M K++VV G + G ++ R L G +V R A+ L ++V
Sbjct: 2 MVDKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRK-KAAKELRLQGAEVVQG 58
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 32.4 bits (74), Expect = 0.028
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGF----ARRAEMIDFAESL-----FAFFV 50
S+++V+ G G G A L+ K ++V R + ESL +
Sbjct: 11 GSRVMVIGGD--GYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRI 68
Query: 51 DIVAAKGHQVIGFAR-----RAEMIDAMAKENPDWKVH 83
A + I + ++ PD VH
Sbjct: 69 SRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVH 106
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 32.2 bits (73), Expect = 0.030
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
M+ ++ G G + RALA +G ++IG +R + E++ A + + G +
Sbjct: 4 MTGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQ---MEAIRASGAEPLLWPGEE 58
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 31.8 bits (73), Expect = 0.033
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 70 IDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
+ +A L DVT DAE+ F I + G I + + FA
Sbjct: 49 VHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCIA---FAN 99
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 31.8 bits (72), Expect = 0.040
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGH--QVIGFARRAE 37
++VTGAS G + + L G R A+
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ 41
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 31.4 bits (72), Expect = 0.044
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
L+ DV +DA + F + + D +++ G FAP
Sbjct: 64 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIG---FAP 99
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 31.5 bits (72), Expect = 0.046
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 70 IDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
++ + ++ + H ++DV D EV+ F+ I G+ID + ++ FA
Sbjct: 74 LEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIA---FAN 124
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 31.5 bits (72), Expect = 0.050
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
+ DV+ V F + ++G +D +++ F+
Sbjct: 85 VPCDVSDAESVDNMFKVLAEEWGSLDFVVHAVA---FSD 120
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 31.4 bits (72), Expect = 0.051
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
DV A + F+ + K+G +D +++ G F+
Sbjct: 86 GHCDVADAASIDAVFETLEKKWGKLDFLVHAIG---FSD 121
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 31.2 bits (71), Expect = 0.053
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGH--QVIGFARRAE 37
K +++ GA+ G +L + ++ +VI AR+A
Sbjct: 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL 42
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 31.1 bits (71), Expect = 0.061
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
+++VTGA+ + + ++ L G++V G AR A + + +
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWD 56
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 31.4 bits (71), Expect = 0.062
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
+V T A+ +G + + G +++ R+ E D ++
Sbjct: 173 SALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQ 215
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 31.0 bits (71), Expect = 0.069
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
+ DVT+D E+ F + FG +D +++ FAP
Sbjct: 63 FRADVTQDEELDALFAGVKEAFGGLDYLVHAIA---FAP 98
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 31.0 bits (71), Expect = 0.073
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
L DV D E+ + F + + +D ++++ FAP
Sbjct: 80 LPCDVISDQEIKDLFVELGKVWDGLDAIVHSIA---FAP 115
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 31.0 bits (71), Expect = 0.075
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
++DV+K+ ++ + G +D ++++ FAP
Sbjct: 61 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVA---FAP 96
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 31.0 bits (71), Expect = 0.076
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
DV DA++ F + + +D ++++ G FAP
Sbjct: 69 FPCDVADDAQIDALFASLKTHWDSLDGLVHSIG---FAP 104
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 30.7 bits (70), Expect = 0.082
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHIDVMINNAGVNEFAP 123
+K DV+ D ++ ++ +G +D+++++ +AP
Sbjct: 76 VKCDVSLDEDIKNLKKFLEENWGSLDIIVHSIA---YAP 111
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo
sapiens} SCOP: c.72.3.1
Length = 313
Score = 30.9 bits (69), Expect = 0.086
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 13/130 (10%)
Query: 7 VTGASVG-IGAAILRALAAKGHQVIGFARRAEMIDFA----ESLFAFFVDIVAAKGHQVI 61
+ S G GA A A G+ V+ R +A + + ++
Sbjct: 59 LDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLL 118
Query: 62 GFARRAEMIDAMAKENPDWKV-----HSLKVDVTKDAEVVEAFDWINNKFGHI---DVMI 113
+ A+ ++ L V+ T A+ + + +
Sbjct: 119 SLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFY 178
Query: 114 NNAGVNEFAP 123
A V++F
Sbjct: 179 LAAAVSDFYV 188
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 30.6 bits (70), Expect = 0.100
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 14 IGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
IGA++ L +GH +IG +R+ + A
Sbjct: 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVER 42
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.7 bits (70), Expect = 0.10
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAF 48
I+ TG+ IG I G +V+G +R + ++
Sbjct: 145 ILGTGS---IGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL 185
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 30.7 bits (70), Expect = 0.10
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 14 IGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
+GA + +L A G + ++R + ES
Sbjct: 150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG 183
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 30.6 bits (69), Expect = 0.10
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKG--HQVIGFARRA 36
+K + + GAS G +L+ + +G +V RR
Sbjct: 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK 54
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia pestis}
PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 30.4 bits (68), Expect = 0.13
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 22/118 (18%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQ---VIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
K ++V GAS G G A A + F R E S +
Sbjct: 48 KRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGW------------- 94
Query: 60 VIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMINNAG 117
+ A + S+ D D D I G +D +I +
Sbjct: 95 -----YNSAAFHKFAAQK-GLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 30.0 bits (67), Expect = 0.17
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMID 40
V+ + G A LA KG V+ + A+ I
Sbjct: 4 SKTYAVLGLGNGGHAFAAY--LALKGQSVLAWDIDAQRIK 41
Score = 29.6 bits (66), Expect = 0.21
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKE------NPDWKVHSLKVDVTKD-AEVVEAFDWI 102
A KG V+ + A+ I + P + +T D V+ D I
Sbjct: 24 ALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 79
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf;
1.91A {Micromonospora echinospora}
Length = 402
Score = 30.1 bits (68), Expect = 0.18
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 1 MSKIIVVTGASVG-IGA--AILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
I+ G + ++ LA +GH++ + D ++ A V
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRIT-YVTTPLFADEVKAAGAEVVLY 57
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 30.0 bits (68), Expect = 0.19
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIG 31
+ I +TGA I + I R L +GH VI
Sbjct: 29 NLKISITGAGGFIASHIARRLKHEGHYVIA 58
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 29.6 bits (66), Expect = 0.20
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
K + + GA +GA I R + H + E D + + D
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGW 64
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 29.5 bits (67), Expect = 0.22
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFAR 34
S+ + VTGAS IG+ ++ L +G+ V R
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVR 37
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 29.5 bits (67), Expect = 0.28
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
++V IG + ++I R + + L
Sbjct: 148 LLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL 188
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 29.1 bits (66), Expect = 0.29
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFAR 34
K V G + + + +++ L KG+ V R
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR 41
>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding,
fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}
Length = 422
Score = 29.0 bits (64), Expect = 0.36
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 23/119 (19%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQ---VIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
K ++V GAS G G A A + F + A +
Sbjct: 62 KKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAG-----------TAGWYN 110
Query: 60 VIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFG-HIDVMINNAG 117
F + A+ + S+ D DA + + I + G +D+++ +
Sbjct: 111 SAAFDKHAKAAGLYS--------KSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLA 161
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 28.7 bits (65), Expect = 0.37
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 44 SLFAFFVDIVAAKGHQVIGFARRAEMIDAMAKE--NPDWKVHSLKVDVTKDAEVVEAFDW 101
L A++ + H V RR E A+ E + D + D + FD
Sbjct: 15 LLCAYY----LSLYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDL 70
Query: 102 I 102
+
Sbjct: 71 L 71
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET:
ERY UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 29.0 bits (65), Expect = 0.39
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 2 SKIIVVTGASVG---IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFV 50
+ I + + A+ G ++R L A+GH+V +A D + V
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVT-YAIPPVFADKVAATGPRPV 58
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.8 bits (64), Expect = 0.49
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
+ V G +G ++ R AA G +V AR ++++ + I
Sbjct: 158 VAVLGLGR-VGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHI 204
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 28.4 bits (64), Expect = 0.61
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 16 AAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIGFARR--AEMIDAM 73
I +AA+GH V + + E + AF + V K H G A + + +
Sbjct: 21 MRIASTVAARGHHVRVYTQSWE----GDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHL 76
Query: 74 AKENPDWKVHS 84
+ D V
Sbjct: 77 KEHPADR-VVG 86
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural
genomics, protein structure initiative, PSI; 2.70A
{Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Length = 330
Score = 28.0 bits (63), Expect = 0.68
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
++VTGA+ G+G + L +G+ V+ E D+ + L A
Sbjct: 151 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA 196
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 28.5 bits (64), Expect = 0.68
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 22/62 (35%)
Query: 62 GFARRAEMIDAMAKENPDWKV---------------------HSLKVDVTKDAEVVEAFD 100
FA M P+W H ++VDV E+ + FD
Sbjct: 289 SFATFMSYK-TMDTLFPEWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFD 347
Query: 101 WI 102
I
Sbjct: 348 EI 349
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 28.0 bits (63), Expect = 0.78
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFAR 34
+ VTG + +G+ I+++L G+ V R
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIR 33
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 28.2 bits (63), Expect = 0.86
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 21/61 (34%)
Query: 62 GFARRAEMIDAMAKENPDWKV--------------------HSLKVDVTKDAEVVEAFDW 101
GFA+ E + +++ +P+ KV H + V A++ E FD
Sbjct: 332 GFAKFMEFV-SVSVTHPELKVGDYFFGKCFDAMEVDALNSSHPVSTPVENPAQIREMFDD 390
Query: 102 I 102
+
Sbjct: 391 V 391
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.9 bits (61), Expect = 0.86
Identities = 11/70 (15%), Positives = 27/70 (38%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIGFA 64
+ + G + +G + LA GH+++ +RR E + + + + G + A
Sbjct: 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAA 62
Query: 65 RRAEMIDAMA 74
++
Sbjct: 63 EACDIAVLTI 72
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 27.9 bits (63), Expect = 0.90
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
++V GA+ GIG A ++ G +VI R +F +S+
Sbjct: 163 VLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV 203
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 28.0 bits (63), Expect = 0.92
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAE 37
++ ++ G+G A+++ AA G + I R
Sbjct: 171 VIQNASNSGVGQAVIQIAAALGLRTINVVRDRP 203
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 27.9 bits (62), Expect = 0.99
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 22/75 (29%)
Query: 62 GFARRAEMIDAMAKENPDWKV--------------------HSLKVDVTKDAEVVEAFDW 101
GFA+ E+I A+ P+ + + ++ E FD
Sbjct: 394 GFAKYMELI-AVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDE 452
Query: 102 IN-NKFGHIDVMINN 115
++ NK I M+ +
Sbjct: 453 VSYNKGACILNMLKD 467
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 27.5 bits (62), Expect = 1.0
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEM--IDFAESLFAFF-------VDIVAA 55
+ + G +G+AI R L +G + R E+ +D + FF V + AA
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRA-VHDFFASERIDQVYLAAA 64
Query: 56 K 56
K
Sbjct: 65 K 65
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 27.9 bits (62), Expect = 1.1
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 58 HQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWI 102
+IG++ ID+M +L ++ + + +AF +
Sbjct: 347 SALIGWSDLQNSIDSMKDPER---FSTLVQNLNDNTDPDDAFSTV 388
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 27.7 bits (62), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 8/30 (26%)
Query: 3 KIIVVTGASVGIG---AAILRALAAKGHQV 29
K +V+ GA G+G +A L+ GH+V
Sbjct: 2 KTVVI-GA--GLGGLLSAAR--LSKAGHEV 26
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.6 bits (62), Expect = 1.2
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVI 30
M+K+++ G G +G+ + ++G +I
Sbjct: 1 MAKLLITGGC--GFLGSNLASFALSQGIDLI 29
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold,
oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana}
SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A*
1m67_A* 1n1e_A* 1n1g_A*
Length = 366
Score = 27.5 bits (62), Expect = 1.2
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMID 40
++K +V + G A++ L+ K +V + E +
Sbjct: 15 LNKAVVFGSGAFGTALAMV--LSKKCREVCVWHMNEEEVR 52
Score = 27.5 bits (62), Expect = 1.2
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 52 IVAAKGHQVIGFARRAEMIDAMAK--EN----PDWKVHSLKVDVTKD-AEVVEAFDWI 102
+++ K +V + E + + + EN ++ S + T D + + I
Sbjct: 33 VLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLAS-NITFTSDVEKAYNGAEII 89
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 27.6 bits (62), Expect = 1.2
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 1 MS-KIIVV-TGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGH 58
MS + ++ GA +G I L R A+ I + A DIV
Sbjct: 1 MSLSVAIIGPGA---VGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYE 57
Query: 59 QVIG 62
V
Sbjct: 58 DVTN 61
Score = 25.7 bits (57), Expect = 5.0
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 4/49 (8%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWI 102
R A+ I + + + V +V FD I
Sbjct: 22 QQSLPHTTLIGRHAKTITYYTVPH----APAQDIVVKGYEDVTNTFDVI 66
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 27.6 bits (62), Expect = 1.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESL 45
++VT A+ G G ++ VIG E F +SL
Sbjct: 167 VLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL 207
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 27.3 bits (61), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 8/31 (25%)
Query: 3 KIIVVTGASVGIG---AAILRALAAKGHQVI 30
+ +VV GA G+G A LA GH++I
Sbjct: 2 RAVVV-GA--GLGGLLAGAF--LARNGHEII 27
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 27.2 bits (60), Expect = 1.3
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 14 IGAAILRALAAKGHQVIGFARRAEMI-DFAESLFAFFVDIVAAKGHQVIGFARRAEMIDA 72
++ L G +V+ +R + S A +VI A E +
Sbjct: 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSS 98
Query: 73 MAKENPDWK 81
+ +
Sbjct: 99 LCSLSDQLA 107
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976,
oxidoreductase, phospholipid biosynthesis; HET: EPE;
2.10A {Coxiella burnetii}
Length = 356
Score = 27.5 bits (62), Expect = 1.3
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 52 IVAAKGHQVIGFARRAEMIDAMAK--EN----PDWKVHSLKVDVTKD-AEVVEAFDWI 102
++A KG +V ++ ++ +D M N P++ + D +E I
Sbjct: 47 VLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPE-TLKAYCDLKASLEGVTDI 103
Score = 25.2 bits (56), Expect = 6.7
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 1 MSKIIVVTGASVGIGA---AILRALAAKGHQVIGFARRAEMID 40
I + GA G+ A+ LA KG +V ++ ++ +D
Sbjct: 28 FKHPIAILGA----GSWGTALALVLARKGQKVRLWSYESDHVD 66
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics,
protein structure initiative, MCSG; HET: DTY; 2.80A
{Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Length = 328
Score = 27.3 bits (61), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
++VTGA+ G+G+ + LA +G+ V +A D+ L A
Sbjct: 153 VLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA 195
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein
structure initiative, center for eukaryotic structural
genomics; HET: TYD C0T; 2.19A {Micromonospora
echinospora} PDB: 3iaa_A*
Length = 415
Score = 27.3 bits (61), Expect = 1.4
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 19/85 (22%)
Query: 1 MSKIIVVTGASVG-----IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAA 55
M+ +++V AS G + ++ L +GH+V F + V A
Sbjct: 20 MAHLLIVNVASHGLILPTL--TVVTELVRRGHRVSYVTAGG------------FAEPVRA 65
Query: 56 KGHQVIGFARRAEMIDAMAKENPDW 80
G V+ + DA D
Sbjct: 66 AGATVVPYQSEIIDADAAEVFGSDD 90
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.4
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 64 ARRAEMIDAMAKENPDW-KVHSLKVDVTK----DAEVVEAF 99
E + K+ +W + S +V+ K A+ +AF
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD--KAF 145
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWI 102
+GH+V G+ R + ++ D + + + D + + D +
Sbjct: 20 CKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN-DPDFLATSDLL 67
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIG 31
K I++TG + +G+ + L GH+V
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTV 56
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 27.2 bits (60), Expect = 1.5
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
+ G +V ++
Sbjct: 96 LTFPFLDLGWEVTALELSTSVLAAF 120
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 26.8 bits (59), Expect = 1.5
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 22 LAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVIGFARRAEMIDAMAKENPDWK 81
LA G V+G R + F D++ +Q G ++ +
Sbjct: 46 LALDGDAVVGLIR----LVGDGFSSVFVQDLIVLPSYQRQGIGSS--LMKEALGNFKEAY 99
Query: 82 VHSLKVDVTKDAE 94
L + T+
Sbjct: 100 QVQLATEETEKNV 112
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 27.1 bits (61), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 IVVTGASVGIG-AAILRALAAKGHQVIGFARRAEMIDFAESL 45
++V A+ +G AA+ A A G +V+ A R E + +L
Sbjct: 129 VLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL 169
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 27.2 bits (61), Expect = 1.5
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVV 96
G+ + F +D + S + D + A+VV
Sbjct: 23 LKAGYLLNVFDLVQSAVDGLVAAGASA-ARSAR-DAVQGADVV 63
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative
homoserine kinase, THRB, amino-acid biosynthesis,
ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Length = 298
Score = 27.2 bits (61), Expect = 1.5
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 67 AEMIDAMAKENPDWKVHSLKVD-----VTKDAE 94
++ ++ D V L V+ V ++
Sbjct: 261 NKLQTSLQTLEIDADVLLLDVEGSGAEVFREGH 293
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 27.0 bits (60), Expect = 1.8
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 3 KIIVVTG-ASV-GIGAAILRALAAKGHQVI----GFARRAEMIDFAESLFAFFVDIVAAK 56
K + G A G G A+ ++LAA G +++ A F +
Sbjct: 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGS 68
Query: 57 GHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWINNKFGHIDVMI 113
++ + D D K + + + + V EA + + FG ID+++
Sbjct: 69 LMEIKKVYPLDAVFDNPEDVPEDVKANK-RYAGSSNWTVQEAAECVRQDFGSIDILV 124
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 26.4 bits (59), Expect = 2.3
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVV 96
G+ +I + + V S DV + A+ +
Sbjct: 20 MKHGYPLIIYDVFPDACKEFQDAGEQV-VSSPA-DVAEKADRI 60
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 26.5 bits (59), Expect = 2.4
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAF 48
I TG IG ++ +A G VIG D AF
Sbjct: 142 IYGTGQ---IGQSLAAKASALGMHVIGVNTTGHPADHFHETVAF 182
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure
initiati enzyme discovery for natural product
biosynthesis, natPro; 2.40A {Streptomyces SP} PDB:
4g2t_A*
Length = 398
Score = 26.6 bits (59), Expect = 2.4
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 3 KIIVVTGASVG---IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
+I+V+ G S G + AL A GH+V+ A M F
Sbjct: 17 RILVIAGCSEGFVMPLVPLSWALRAAGHEVL-VAASENMGPTVTGAGLPFAPT 68
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 26.3 bits (59), Expect = 2.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGF 32
++VTG + IG+ I+ L A+G +V
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVL 30
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 26.3 bits (58), Expect = 2.5
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
L + G +M+ A
Sbjct: 54 HLEHFTKEFGDTAGLELSEDMLTHA 78
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 26.3 bits (57), Expect = 2.6
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 14 IGAAILRALAAKGHQVIGFARRAEMIDFAESLF 46
+G AI GH+V + + + E +
Sbjct: 30 MGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVI 62
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II,
11231J, structur genomics, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 304
Score = 26.6 bits (59), Expect = 2.6
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGF 32
K + + V I L+ +IG+
Sbjct: 202 KHGITFNSKVYIIGEYLQQRRKSDFSLIGY 231
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 26.4 bits (58), Expect = 2.8
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
LR LA V G A+M+ A
Sbjct: 64 HLRHLADSFGTVEGLELSADMLAIA 88
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 26.2 bits (58), Expect = 2.9
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVIGFARRAE 37
+ KI++V G G +G R L A G+ + R
Sbjct: 21 IHKIVIVGG--YGKLGGLFARYLRASGYPISILDREDW 56
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 26.2 bits (58), Expect = 2.9
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMID 40
+ G + +G + I R +D
Sbjct: 171 FIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 206
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 26.4 bits (59), Expect = 3.0
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 32/101 (31%)
Query: 3 KIIVV-TGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQVI 61
K+ ++ GA +G LA GH+VI AR V + A G ++
Sbjct: 21 KVAIMGAGA---VGCYYGGMLARAGHEVILIARPQ------------HVQAIEATGLRLE 65
Query: 62 GFARRAEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFDWI 102
+KV + D V+ D +
Sbjct: 66 T----------------QSFDEQVKVSASSDPSAVQGADLV 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 26.0 bits (57), Expect = 3.1
Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWKV--HSLKVDVTKDAEVVEAFDWINNKFGHIDV 111
A+ G++V + + + + + V +++ ++ V +A++ I + F H+
Sbjct: 48 ASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPS 107
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 7/32 (21%)
Query: 1 MSKIIVVTGASVGIG---AAILRALAAKGHQV 29
++ V G G AAI AL G V
Sbjct: 10 KTRRAEVAGG--GFAGLTAAI--ALKQNGWDV 37
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 25.4 bits (56), Expect = 3.4
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 67 AEMIDAMAKENPDWKVHSLKVDVTKDAEVVEAFD 100
++ +A++ E + V L +D +++E+ E F+
Sbjct: 40 KQVFEAISNEPSNSNVSFLSIDADENSEISELFE 73
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 26.0 bits (58), Expect = 3.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 5 IVVTGASVGIG-AAILRALAAKGHQVIGFARRAEMIDFAESL 45
++V GA G+G A+ A A G +IG R E ++ A+
Sbjct: 174 LLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA 215
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 25.8 bits (57), Expect = 3.5
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
+ L K EM+ A
Sbjct: 51 LTENLCPKFKNTWAVDLSQEMLSEA 75
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 26.0 bits (58), Expect = 3.5
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 5 IVVTGASVG-IGAAILRALAAKGHQVIGF 32
IVVTG + G IG+ ++ L G++V+
Sbjct: 3 IVVTGGA-GFIGSHLVDKLVELGYEVVVV 30
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 26.0 bits (57), Expect = 3.5
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 16 AAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
A+ L G + ++ + V +
Sbjct: 18 VALAARLRELGADAR-MCLPPDYVERCAEVGVPMVPV 53
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 26.0 bits (57), Expect = 3.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 8 TGASVGIGAAILRALAAKGHQVI 30
TG G A + LA KGHQ++
Sbjct: 260 TGGWGGYDVASSKLLAEKGHQIL 282
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 25.6 bits (56), Expect = 4.2
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 13 GIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
G L G++ G + AE+
Sbjct: 33 GGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSR 67
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 25.9 bits (57), Expect = 4.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 13 GIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
G G I L+ +GH V+G +ID+A+ F
Sbjct: 56 GQGR-IGGYLSKQGHDVLGTDLDPILIDYAKQDFP 89
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 25.8 bits (57), Expect = 4.2
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 53 VAAKGHQVIGFARRAEMIDAMAKEN 77
+ GH+ + + + A+ +E
Sbjct: 41 LRKGGHECVVYDLNVNAVQALEREG 65
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 25.9 bits (57), Expect = 4.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
LA +G++V+G EM+ A
Sbjct: 55 PTLELAERGYEVVGLDLHEEMLRVA 79
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 25.9 bits (57), Expect = 4.3
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 5 IVVTGASVGIG-AAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
+++ GAS G+G AI G + A+ +L
Sbjct: 224 VLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRALGC 266
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 25.8 bits (57), Expect = 4.3
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 17 AILRALAAKGHQVIGFARRAEMIDFAESLFAFFV 50
I++ L A+GH+V +A E ++ A V
Sbjct: 31 GIVQELVARGHRVS-YAITDEFAAQVKAAGATPV 63
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 25.7 bits (57), Expect = 4.4
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 3 KIIVVTGASVGIGAAI-----LRALAAKGHQV--IGFARRAEMIDFAESLFAFFVDIVAA 55
KI + SVG G+ + + LA +GH++ I + +++ V +
Sbjct: 17 KIGITCYPSVG-GSGVVGTELGKQLAERGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQY 75
Query: 56 KGHQVIGFARRA--EMIDAMAKENPDWKVHS 84
Q + +M + +EN D +H
Sbjct: 76 SVFQYPPYDLALASKMAEVAQRENLDI-LHV 105
>2nlz_A Cephalosporin acylase; structural genomics, protein structure
initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans}
SCOP: d.153.1.6
Length = 547
Score = 25.9 bits (58), Expect = 4.5
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 13 GIGAAILRALAAKGHQVIGFARRAEM 38
I +AL +GH++
Sbjct: 484 TFPVDIAQALVRRGHKIQVVLDEGAF 509
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 25.9 bits (58), Expect = 4.6
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 1 MSKIIVVTGASVG-IGAAILRALAAKGHQVI 30
M+ I++ GA G IG+ ++ L +G V+
Sbjct: 1 MNSILICGGA--GYIGSHAVKKLVDEGLSVV 29
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 25.5 bits (57), Expect = 4.8
Identities = 2/18 (11%), Positives = 8/18 (44%)
Query: 15 GAAILRALAAKGHQVIGF 32
G ++ L ++++
Sbjct: 24 GNEMIANLDKNKYEIVPI 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 25.5 bits (56), Expect = 5.1
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 3 KIIVVTGASVG---IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQ 59
+++ + AS + A A GH+V A A + + A G
Sbjct: 22 RVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPA------------LTEDITAAGLT 69
Query: 60 VIGFARRAEMIDAMAKENPDW 80
+ +++D M D
Sbjct: 70 AVPVGTDVDLVDFMTHAGHDI 90
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 25.6 bits (56), Expect = 5.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 8 TGASVGIGAAILRALAAKGHQVI 30
+ G A + LA+KG++ +
Sbjct: 251 SKGWWGYNLASPQYLASKGYKFL 273
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB:
1g3r_A* 1ion_A*
Length = 237
Score = 25.5 bits (57), Expect = 5.5
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 1 MSKIIVVTGASVGIG-----AAILRALAAKGHQVIGFARRAEMIDF 41
M +II + G G A + AL +G +V+ +D
Sbjct: 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVL-------AVDG 39
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A
3a97_A 3adp_A* 3f3s_A*
Length = 319
Score = 25.4 bits (56), Expect = 5.6
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 3 KIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKG 57
+++ G+ + +G + A+ G +V + I A + + G
Sbjct: 7 GDVLIVGSGL-VGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSG 60
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 25.5 bits (56), Expect = 5.7
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 15/121 (12%)
Query: 3 KIIVVTG-ASV-GIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGHQV 60
+ V G A G G AI + LA+ G +V + F +SL + +D
Sbjct: 10 QTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGS 69
Query: 61 IGFARRAEMIDAMAKENPDWKVHSLKVDVTKDAE--------VVEAFDWINNKFGHIDVM 112
+ +DA + D + D+ + + E + G+ID++
Sbjct: 70 LIEFAGVYPLDAAFDKPED-----VPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDIL 124
Query: 113 I 113
+
Sbjct: 125 V 125
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 25.4 bits (55), Expect = 6.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 14 IGAAILRALAAKGHQVIGFARRAE 37
+G + ALA GH+V R +
Sbjct: 30 VGRTMAGALADLGHEVTIGTRDPK 53
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 25.4 bits (55), Expect = 6.1
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 9 GASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
L A G Q++G E +D A L A
Sbjct: 126 PCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 25.1 bits (55), Expect = 6.3
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 20 RALAAKGHQVIGFARRAEMIDFAESLFA 47
LA+ GHQ+ G +++ A
Sbjct: 57 GHLASLGHQIEGLEPATRLVELARQTHP 84
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 25.4 bits (55), Expect = 6.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 20 RALAAKGHQVIGFARRAEMIDFA 42
L +G V +M+ +A
Sbjct: 73 IMLVEEGFSVTSVDASDKMLKYA 95
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 25.4 bits (56), Expect = 6.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 2 SKIIVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
+VVTGAS G+G+ + L G+QV + R + +SL A
Sbjct: 147 DGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGA 192
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 25.2 bits (56), Expect = 6.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVI 30
M++ ++VTG + IG+ + L G+ +
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPV 30
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 25.2 bits (56), Expect = 6.8
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 1 MSKI--IVVTGASVGIGAAILRALAAKGHQVI 30
MS +V GA V +G AI RALAA GH+V+
Sbjct: 1 MSTDIDCIVIGAGV-VGLAIARALAAGGHEVL 31
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 25.1 bits (55), Expect = 6.8
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 3 KIIVVTGASVG---IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
+++VV + AL A GH+V+ A E+ A I
Sbjct: 3 RVLVVPLPYPTHLMAMVPLCWALQASGHEVL-IAAPPELQATAHGAGLTTAGI 54
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 25.1 bits (54), Expect = 7.2
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 1 MSKIIVVTGASVGIGAAILRALAAKGHQVIGFARR-------AEMIDFAESLFAFFVDIV 53
+K + A + + A A + E A+ ++ +
Sbjct: 28 NNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPLTTEQQATAQKIYDDYYTQT 87
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPDWK 81
+A Q+ ++R E + +PD
Sbjct: 88 SALRQQL--ISKRYEYNALLTASSPDTA 113
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 25.1 bits (55), Expect = 7.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 51 DIVAAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVD 88
D + G R A +I+ E +S+ VD
Sbjct: 25 DYYKDAATEKFGLVRTASLIEQARAEVK----NSVLVD 58
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 24.9 bits (54), Expect = 7.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 13 GIGAAILRALAAKGHQVIGFARRAEMIDFAE 43
G+G L G +V+G +MI A
Sbjct: 48 GVGG-FSFLLEDYGFEVVGVDISEDMIRKAR 77
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1,
ATP-grAsp domain, carbamoylphosphate synthase subunit
(split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 25.2 bits (55), Expect = 7.7
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 1 MSKI-IVVTGASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDIVAAKGH- 58
M K +++T A K +V + + V + +
Sbjct: 2 MQKPHLLITSAGRRAKLVEYFVKEFKTGRVSTADCSPLASALYMADQHYIVPKIDEVEYI 61
Query: 59 -QVIGFARRAEMIDA 72
++ + E + A
Sbjct: 62 DHLLTLCQD-EGVTA 75
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 25.2 bits (56), Expect = 7.7
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 7 VTGASVG------IGAAILRALAAKGHQVIGFARRAEMIDFAESLFAFFVDI 52
+T ++VG IG AI R L G Q + R + A A FV
Sbjct: 153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVST 204
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP
UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2
c.65.1.1
Length = 660
Score = 25.4 bits (56), Expect = 7.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 14 IGAAILRALAAKGHQVIG 31
+G + AL A G+++
Sbjct: 11 MGCLGIEALLAAGYEISA 28
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus,
mutation, glycolysis, nucleotide-binding, transfera;
HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A*
3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A*
3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X*
1v4t_A*
Length = 470
Score = 25.0 bits (54), Expect = 7.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 13 GIGAAILRALAAKGHQVIG 31
G GAA++ A+A K ++G
Sbjct: 451 GRGAALVSAVACKKACMLG 469
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; 2.20A {Thermus thermophilus} SCOP:
c.129.1.1
Length = 217
Score = 24.9 bits (55), Expect = 7.9
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 4 IIVVTGASVGIGAAILRALAAKGHQVIGF 32
VVTG G+ A+ R G +G
Sbjct: 70 FGVVTGGGPGVMEAVNRGAYEAGGVSVGL 98
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 24.8 bits (54), Expect = 8.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 12 VGIGAAIL-RALAAKGHQVIGFARRAEMIDFAESLFA 47
+G G L RALA +G + +G ++D A + A
Sbjct: 59 LGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGA 95
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 25.2 bits (56), Expect = 8.0
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 5 IVVTGASVGIGAAILRALAAKGHQVI 30
I++TG + +G+ ++ +GH+++
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEIL 48
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 25.2 bits (55), Expect = 8.4
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 3 KIIVVTG-AS-VGIGAAILRALAAKGHQVI----GFARRAEMIDFAESLFAFFVDIVAAK 56
K V G A G G AI + L A G +V+ S F
Sbjct: 10 KTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEP 69
Query: 57 GHQVIGFARRAEMIDAMAKENP-DWKVHS---LKVDVTKDAE--------VVEAFDWINN 104
+V A + K P D + + +V+ + + E + +
Sbjct: 70 SSKVAAEAAEKPVDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRA 129
Query: 105 KFGHIDVMI 113
G ID+++
Sbjct: 130 DVGQIDILV 138
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 24.9 bits (55), Expect = 8.5
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 85 LKVDVTKDAEVVEAFDWINNKFGHID 110
L++DV + + + G +
Sbjct: 61 LELDVQNEEHLASLAGRVTEAIGAGN 86
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 25.0 bits (55), Expect = 8.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 5 IVVTGASVGIG-AAILRALAAKGHQVIGFARRAEMIDFAESL 45
I++ G + G+G A+ A VI A R E ++ +SL
Sbjct: 175 ILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL 216
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN
nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A
{Haemophilus influenzae} PDB: 3zu0_A*
Length = 579
Score = 24.9 bits (54), Expect = 8.8
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 55 AKGHQVIGFARRAEMIDAMAKENPD 79
+ GF+ ++ + K+ +
Sbjct: 38 QTKVDIGGFSAVNAKLNKLRKKYKN 62
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural
genomics, PSI-2, structure initiative; HET: CIT; 1.25A
{Bacillus subtilis subsp}
Length = 341
Score = 25.1 bits (55), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 51 DIVAAKGHQVIGFARRAEMIDAMAKENPDWKVHSLKVD 88
D + K G AR A++I ++NP ++L VD
Sbjct: 28 DYYSDKETADFGLARTAQLIQKHREQNP----NTLLVD 61
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 24.8 bits (54), Expect = 9.1
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 10 ASVGIGAAILRALAAKGHQVIGFARRAEMIDFAESLFA 47
A++G G LA +V F + + + +
Sbjct: 29 ATMGNGNDTA-FLAGLSKKVYAFDVQEQALGKTSQRLS 65
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 25.0 bits (55), Expect = 9.3
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 7/47 (14%)
Query: 4 IIVVTGASVGIGAAIL---RALAAKGHQVI----GFARRAEMIDFAE 43
+ G+ G + L R + + + GF
Sbjct: 108 CVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILG 154
>3dfu_A Uncharacterized protein from 6-phosphogluconate
dehydrogenase-like family; putative rossmann-like
dehydrogenase, structural genomics; HET: MSE; 2.07A
{Corynebacterium glutamicum}
Length = 232
Score = 24.6 bits (53), Expect = 9.3
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 15 GAAILRALAAKGHQVIGF-----ARRAEMIDFAESLFAFFVDIVAAKGH 58
+ L + GH V R E++ +V+ ++A
Sbjct: 18 TVNMAEKLDSVGHYVTVLHAPEDIRDFELVVIDAHGVEGYVEKLSAFAR 66
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 25.0 bits (55), Expect = 9.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 54 AAKGHQVIGFARRAEMIDAMAKENPD 79
+ + V G ARR + D + +
Sbjct: 50 SGEKTPVGGVARRVALFDRVWARAKN 75
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 24.9 bits (54), Expect = 9.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 18 ILRALAAKGHQVIGFARRAEMIDFA 42
R L+ +V AEMI A
Sbjct: 60 WTRHLSGLADRVTALDGSAEMIAEA 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.396
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,155,865
Number of extensions: 136387
Number of successful extensions: 1657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1397
Number of HSP's successfully gapped: 536
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)