BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7030
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 26/101 (25%)
Query: 27 PFDMPNLPTPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDIN-CVDPL-------- 77
P D+ LP L+ + KYL E + +T + C+ +A N +N C+ PL
Sbjct: 20 PEDLAGLPEYLS-KTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPLLQIDRDSG 78
Query: 78 ----------------GRSALTLAIEGENLEMTELLIVMGV 102
G SAL +AIE +L+ +LL+ G
Sbjct: 79 NPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGA 119
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 34 PTPLTLE-EKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLE 92
TPL L EKK+L ++R HI+IN D G++AL LA+E + +
Sbjct: 220 KTPLILAVEKKHL------------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 93 MTELLIVMGV 102
+ ELL G
Sbjct: 268 IAELLCKRGA 277
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 35 TPLTLE-EKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEM 93
TPL L EKK+L ++R HI+IN D G++AL LA+E + ++
Sbjct: 241 TPLILAVEKKHL------------GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288
Query: 94 TELLIVMGV 102
ELL G
Sbjct: 289 AELLCKRGA 297
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 62 RAYRNHHIDINCVDP-LGRSALTLAIEGENLEMTELLIVMGVEP 104
R R+ D+N +P GR+ L LA+E + + ELL+ G +P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 62 RAYRNHHIDINCVDP-LGRSALTLAIEGENLEMTELLIVMGVEP 104
R R+ D+N +P GR+ L LA+E + + ELL+ G +P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELL 97
L+ +RG V +K H D+N D G++A ++I+ N ++ E+L
Sbjct: 119 LAADRGHLEIVEVLLK-----HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1ABR|A Chain A, Crystal Structure Of Abrin-A
Length = 251
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 21 GIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTAT 55
G++H D+P LP P TL+E+ ++VE ++ T
Sbjct: 31 GLIH----DIPVLPDPTTLQERNRYITVELSNSDT 61
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 110 NSHADVNAVDDLGKSAL 126
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 310 IDIVKFFFIYTLVLLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEEHDAA 369
+D++KF Y L + A G + R YS S + P + PN+ E
Sbjct: 133 VDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSC-SWPAYMWPFQKPNYTEIRQY 191
Query: 370 CSKWRSF 376
C+ WR+F
Sbjct: 192 CNHWRNF 198
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 145 NSHADVNAVDDLGKSAL 161
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 145 NSHADVNAVDDLGKSAL 161
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 113 NSHADVNAVDDLGKSAL 129
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 146 NSHADVNAVDDLGKSAL 162
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVE 103
L+ +RG V +K H D+N D GR+ L LA +LE+ E+L+ G +
Sbjct: 53 LAAKRGHLEIVEVLLK-----HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 66 NHHIDINCVDPLGRSAL 82
N H D+N VD LG+SAL
Sbjct: 36 NSHADVNAVDDLGKSAL 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,946,638
Number of Sequences: 62578
Number of extensions: 430556
Number of successful extensions: 941
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 26
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)