RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7030
(377 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 170 bits (432), Expect = 5e-47
Identities = 96/326 (29%), Positives = 138/326 (42%), Gaps = 52/326 (15%)
Query: 35 TPLTLEEKKYLLSVERGDTA---TVRKCIKRAYRNHH---IDINCVDPLGR--SALTL-A 85
TPL L K+ + + R A +K + + +D R S L L
Sbjct: 259 TPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIV 318
Query: 86 IEGENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKS 145
+ L+ EL + + P L Q F+
Sbjct: 319 VFVIGLKFPELSDMYLIAPLSRLGQFKWKPFI------------------------KFIF 354
Query: 146 CQNTAYRIL--LLLVSQRADVILLEYLGVTDNHITGQQRGLAPSYLEYLVLLYVAGYIWE 203
+ L ++ S L V GL + LE L++ +V G
Sbjct: 355 HSASYLYFLYLIIFTSVAYYRPTRTDLRV---------TGLQQTPLEMLIVTWVDGLRLG 405
Query: 204 ETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREH 263
E +W G++ Y+ +WN +DF N Y+ F+ R A + ++ L REH
Sbjct: 406 EEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILF------VTQAFLVL-REH 458
Query: 264 WNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMII-DIVKFFFIYTLV 322
W FDP LI E LFA A V S L L+++F N HLGPLQI +GRMI+ DI++F FIY +V
Sbjct: 459 WLRFDPTLIEEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVV 518
Query: 323 LLSFACGLNQLLWYFTELERKDCYST 348
L FACGLNQL Y+ EL+ +C +
Sbjct: 519 LFGFACGLNQLYQYYDELKLNECSNP 544
Score = 79.7 bits (197), Expect = 4e-16
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Query: 30 MPNLPTPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSAL-TLAIEG 88
+P +PL+ EEK +L + ERGD A+V + ++ + ++INC D LGRSAL AIE
Sbjct: 7 VPAEESPLSDEEKAFLPAAERGDLASVYRDLEEPKK---LNINCPDRLGRSALFVAAIEN 63
Query: 89 ENLEMTELLIVMGVEPK--DALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSC 146
ENLE+TELL+ + D LL AI+ E+V+AVE +L + ++ P +
Sbjct: 64 ENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTS 123
Query: 147 QNTA-------------YRILLLLVSQRADV 164
+ T Y I+ LL+ + A V
Sbjct: 124 EFTPGITALHLAAHRQNYEIVKLLLERGASV 154
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 66.2 bits (162), Expect = 8e-13
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 30/148 (20%)
Query: 191 YLVLLYVAGYIWEETCEVWKDGL-YRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAE 249
L ++ + E + G +Y + WN +DF L ++ +L +
Sbjct: 1 ILDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFLLG------- 53
Query: 250 IEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGRMI 309
GL + L+L+ L P L L SLGR +
Sbjct: 54 ----------------------EDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSL 91
Query: 310 IDIVKFFFIYTLVLLSFACGLNQLLWYF 337
++ + L+L FA QL
Sbjct: 92 KSLLNLLLLLLLLLFIFAIIGVQLFGGE 119
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 42.8 bits (101), Expect = 3e-05
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TPL L+ G V+ ++ + D+N D GR+ L LA + +LE+
Sbjct: 9 TPL-------HLAASNGHLEVVKLLLE-----NGADVNAKDNDGRTPLHLAAKNGHLEIV 56
Query: 95 ELLIVMGVEPKD-------ALLQAINSEFVEAVELLLEY 126
+LL+ G + L A + ++ V+LLL++
Sbjct: 57 KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95
Score = 35.8 bits (83), Expect = 0.007
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 72 NCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFVEAVELLL 124
N D GR+ L LA +LE+ +LL+ G + KD L A + +E V+LLL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 125 EY 126
E
Sbjct: 61 EK 62
Score = 30.4 bits (69), Expect = 0.65
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
L+ G+ V+ +K H D+N D GR+ L LA + +LE+ +LL+
Sbjct: 79 LAARNGNLDVVKLLLK-----HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 40.7 bits (96), Expect = 7e-05
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPK 105
L+ + G+ V+ + D+N D +AL LA NLE+ +LL+ G +
Sbjct: 3 LAAKNGNLELVKLLL-----EKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVN 55
Query: 106 D-------ALLQAINSEFVEAVELLLEYE 127
AL A + +E V+LLLE+
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHG 84
Score = 38.0 bits (89), Expect = 8e-04
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
L+ G+ V+ ++ H D+N D G +AL LA NLE+ +LL+ G +
Sbjct: 34 LAARNGNLEIVKLLLE-----HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87
Score = 35.7 bits (83), Expect = 0.004
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 82 LTLAIEGENLEMTELLIVMGVEP-----KDALLQAINSEFVEAVELLLEYE---EIVHKE 133
L LA + NLE+ +LL+ G + AL A + +E V+LLLE+ K+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 134 GEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
G L + +N I+ LL+ AD+
Sbjct: 61 GNTALH----LAARNGNLEIVKLLLEHGADI 87
>gnl|CDD|219699 pfam08016, PKD_channel, Polycystin cation channel. This family
contains the cation channel region of PKD1 and PKD2
proteins.
Length = 423
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/145 (20%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 188 YLEYLVLL-YVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLYVLVFMLRAMAYVQQ 246
L ++ L +V ++ E ++ ++G RYL+ +WN +D L V+V +L
Sbjct: 209 LLCEIIFLVFVLYFVVAEITKIRREG-PRYLRSVWNLLDLAIVALSVVVIVLHIYRDFLA 267
Query: 247 QAEIEANESSKFLGREHWNAFDP---QLIAEGLFAGANVF-SALKLVHLFSINPHLGPLQ 302
+ E+S + FD + +F + LKL + N +
Sbjct: 268 TQLWKQVEASP----VDFTDFDRVARLDQLYRIILAFLLFLTWLKLFKVLRFNRTMSLFT 323
Query: 303 ISLGRMIIDIVKFFFIYTLVLLSFA 327
+L R + +++ F ++ ++ L++A
Sbjct: 324 KTLSRALKELLGFAVMFVILFLAYA 348
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 36.8 bits (86), Expect = 7e-04
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 48 VERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
G V+ ++ +DIN D G +AL +A E NLE+ +LL+
Sbjct: 9 AISGRLELVKYLLE-----KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 26.4 bits (59), Expect = 4.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMGVEPKD-------ALLQAINSEFVEAVELLL 124
GR+AL A LE+ + L+ GV+ AL A + +E ++LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 31.5 bits (72), Expect = 0.67
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 74 VDPLGRSALTLAIEG-ENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLEYEE 128
++ L L AIE + + +LL + E +D LL ++ E V LL Y E
Sbjct: 76 IEALSDEELAAAIEELDIDDAADLLDELPDEVRDELLSLLDPEERARVRQLLSYPE 131
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 31.8 bits (72), Expect = 0.70
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 22/115 (19%)
Query: 44 YLLSVE------RGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELL 97
++L+VE GD R + D NC D GR+ L +A ++++ +L
Sbjct: 80 HMLTVELCQLAASGDAVGARILLTGG-----ADPNCRDYDGRTPLHIACANGHVQVVRVL 134
Query: 98 IVMGVEP-------KDALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKS 145
+ G +P K L A + F E V+LL + + + G + P S
Sbjct: 135 LEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELG----ANAKPDS 185
>gnl|CDD|163495 TIGR03783, Bac_Flav_CT_G, Bacteroides conjugation system ATPase,
TraG family. Members of this family include the
predicted ATPase, TraG, encoded by transfer region genes
of conjugative transposons of Bacteroides, such as
CTnDOT, found on the main chromosome. Members also
include TraG homologs borne on plasmids in Bacteroides.
The protein family is related to the conjugative
transfer system ATPase VirB4 [Cellular processes, DNA
transformation].
Length = 829
Score = 31.3 bits (71), Expect = 0.84
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 33/105 (31%)
Query: 30 MPNLPTPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSA-LTLAIEG 88
M N+ TLE + LL+VE G CI + + A +T+A
Sbjct: 1 MRNVLKATTLESRFPLLAVENG-------CI----------------VSKDADITVAFR- 36
Query: 89 ENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLEYEEIVHKE 133
+E+ EL V E +AI+S + +AV++L EY IVHK+
Sbjct: 37 --VELPELFTVTSAE-----YEAIHSAWHKAVKVLPEY-SIVHKQ 73
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 28.1 bits (63), Expect = 0.98
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 65 RNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPK 105
+ ID+N D G + L LA + LE+ + L+ GV+
Sbjct: 3 EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLN 43
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 30.6 bits (69), Expect = 1.4
Identities = 36/139 (25%), Positives = 51/139 (36%), Gaps = 31/139 (22%)
Query: 60 IKRAYRNHHIDINCVDP-LGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQA 111
I + ++ DIN D G +AL A E ++ +TELL+ G L A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208
Query: 112 INSEFVEAVELLLEY-EEIVHKEGEPYLSRKPPKSCQNT----------AYRILLLLVSQ 160
+ V +LLE ++ C NT Y IL LL+
Sbjct: 209 VKHYNKPIVHILLENGASTDARD-----------KCGNTPLHISVGYCKDYDILKLLLEH 257
Query: 161 RADVILLEY-LGVTDNHIT 178
DV Y LG+T H +
Sbjct: 258 GVDVNAKSYILGLTALHSS 276
>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional.
Length = 247
Score = 30.2 bits (68), Expect = 1.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 186 PSYLEYLVLLYVAGY-------IWEETCEVWKDGLYRYLKDMWN 222
P YL +V+LY AG IW+E C+ W+ G+ + +W+
Sbjct: 159 PDYLA-IVMLYQAGQNDILAVEIWQEDCKEWR-GMRKAYGAVWD 200
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 30.2 bits (67), Expect = 1.6
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 67 HHIDINCVDPLGRSALTLAI-----EGENLEMTELLIVMGVEPKD----------ALLQA 111
D+N D G + L LA N+E+ +LL+ G + L A
Sbjct: 95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWA 154
Query: 112 INSEFVEAVELLLEY 126
+ + VELLLE
Sbjct: 155 ALNGDADIVELLLEA 169
>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+
transport [Inorganic ion transport and metabolism].
Length = 126
Score = 28.8 bits (65), Expect = 1.9
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 16 EIEGPGIVHTQPFDMPN----------LPTPLTLEEKKYLLSVERGDTATV 56
E+EG G+V QP P L TP + Y + E G+T V
Sbjct: 62 EVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDEDGETFDV 112
>gnl|CDD|131882 TIGR02835, spore_sigmaE, RNA polymerase sigma-E factor. Members
of this family comprise the Firmicutes lineage
endospore formation-specific sigma factor SigE, also
called SpoIIGB and sigma-29. As characterized in
Bacillus subtilis, this protein is synthesized as a
precursor, specifically in the mother cell compartment,
and must cleaved by the SpoIIGA protein to be made
active [Transcription, Transcription factors, Cellular
processes, Sporulation and germination].
Length = 234
Score = 29.0 bits (65), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 33 LPTPLTLEEKKYLLS-VERGDTATVRKCIKRAYR 65
LP PLT EE++ LL + +GD + I+R R
Sbjct: 30 LPPPLTGEEEEALLQKLTQGDESAKSTLIERNLR 63
>gnl|CDD|220711 pfam10354, DUF2431, Domain of unknown function (DUF2431). This is
the N-terminal domain of a family of proteins found from
plants to humans. The function is not known.
Length = 166
Score = 28.3 bits (64), Expect = 4.7
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 116 FVEAVELLLEYEEIV--HKEGEPY 137
F A ELL EI K+GEPY
Sbjct: 108 FKNASELLKPGGEIHVTLKDGEPY 131
>gnl|CDD|146204 pfam03448, MgtE_N, MgtE intracellular N domain. This domain is
found at the N-terminus of eubacterial magnesium
transporters of the MgtE family pfam01769. This domain
is an intracellular domain that has an alpha-helical
structure. The crystal structure of the MgtE transporter
shows two of 5 magnesium ions are in the interface
between the N domain and the CBS domains. In the absence
of magnesium there is a large shift between the N and
CBS domains.
Length = 102
Score = 27.1 bits (61), Expect = 6.2
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 77 LGRSALTLAIEG-ENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLEYEE 128
L L +E + + +LL + E ++ LL ++ E E + LL Y E
Sbjct: 49 LPPEELAELLEELDPDDAADLLEELPEEVREELLSLLDPEEREEIRELLSYPE 101
>gnl|CDD|165179 PHA02836, PHA02836, putative transmembrane protein; Provisional.
Length = 153
Score = 27.5 bits (61), Expect = 6.8
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 187 SYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDM----WNFIDFTRNLLYVLVFML 238
SY+ L L+ + GYI E C K GL +Y++D+ +NF+D N+L+ L + L
Sbjct: 100 SYVSALTLIGIIGYI-SECCG--KYGLEKYIQDLLLLLFNFLD--DNILFKLRYYL 150
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 28.4 bits (63), Expect = 7.0
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 78 GRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQAINSEFVEAVELLLEY---- 126
G S + LA++ + E +LL+ G P + L A+ V+AVE LL+
Sbjct: 35 GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94
Query: 127 EEIVHKEGEP--YLSRKPPKSCQNTAYRILLLLVSQRAD 163
+++ +K+G +L+ K I+ LL+++ AD
Sbjct: 95 DDVFYKDGMTPLHLATILKK------LDIMKLLIARGAD 127
>gnl|CDD|215567 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 28.2 bits (63), Expect = 7.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 304 SLGRMIIDIVKFFFIYTLVLLSFA-CGLNQLLWYFTELERKDCYSTMSSTGA 354
GR + + V F L +L F C + ++ YF E E K CY + +
Sbjct: 12 GAGRALNEAVSFVVFSLLDILDFLLCFVYKVADYFFEAEWKPCYCSSAKEAI 63
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 28.4 bits (64), Expect = 7.8
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 131 HKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADVILLEY-LGVTDNHITGQQRGLAPSYL 189
+++G P L K+ Q +L +ILL LG + + + YL
Sbjct: 59 NQKGYPVL----SKAHQA----LLTRFFRLNNPIILLLGELGPILHGMEKESDHDLTPYL 110
Query: 190 EYLVLLY 196
+YL L
Sbjct: 111 KYLKYLL 117
>gnl|CDD|232944 TIGR00372, cas4, CRISPR-associated protein Cas4. This model
represents a family of proteins associated with CRISPR
repeats in a wide set of prokaryotic genomes. This scope
of this model has been broadened since it was first
built to describe an archaeal subset only. The function
of the protein is undefined. Distantly related proteins,
excluded from this model, include ORFs from
Mycobacteriophage D29 and Sulfolobus islandicus
filamentous virus and a region of the
Schizosaccharomyces pombe DNA replication helicase Dna2p
[Mobile and extrachromosomal element functions, Other].
Length = 178
Score = 27.4 bits (61), Expect = 8.6
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 114 SEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYR 152
+A +L+ + E++ P + K C+ YR
Sbjct: 136 ELRKKAEKLIEKIRELLEGGKPPSPPKSSRK-CKFCPYR 173
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,679,383
Number of extensions: 1942294
Number of successful extensions: 1713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1697
Number of HSP's successfully gapped: 44
Length of query: 377
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 279
Effective length of database: 6,590,910
Effective search space: 1838863890
Effective search space used: 1838863890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)