RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7030
(377 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 46/159 (28%)
Query: 161 RADVILLEYLG------VTDN------HITGQQ-RGLAPSYLEYLVLLYVAGYIWEETCE 207
RAD + G V +N H G++ + + +Y + V G + E +
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE--K 1705
Query: 208 VWKDGLYRYLKDMWN----FIDFTRN----LLYVLVFMLRAMAYVQQQAEIEANESSKFL 259
++K+ + + T+ L + + +++ + F
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL-----KSKGLIPADATFA 1760
Query: 260 GREH----WNAFDPQLIAEGLFAGANVFS---ALKLVHL 291
G H + A L + A+V S +++V
Sbjct: 1761 G--HSLGEYAA---------LASLADVMSIESLVEVVFY 1788
Score = 43.5 bits (102), Expect = 9e-05
Identities = 51/304 (16%), Positives = 86/304 (28%), Gaps = 84/304 (27%)
Query: 45 LLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
LL ++ IK + D SAL A+ N +L+ + G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGG-- 162
Query: 105 KDALLQAINSE-FVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRAD 163
Q + F E +L Y +V + + L L+ D
Sbjct: 163 -----QGNTDDYFEELRDLYQTYHVLV----GDLIKF---------SAETLSELIRTTLD 204
Query: 164 VILLEYLGVTDNHITG--QQRGLAPS--YL----------------EYLVLLYVAGYIWE 203
+ G+ +I + P YL Y+V + G+
Sbjct: 205 AEKVFTQGL---NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 204 ETCEVWKDGLYRYLKDM-----------W-NFIDFTRNLLYVLVFM-LRAMAYVQQQA-- 248
E K G + + + W +F R + VL F+ +R +A
Sbjct: 262 ELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-----YEAYP 315
Query: 249 --EIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLV--HLFSINPHLGP---L 301
+ + L P L L + V ++ N HL +
Sbjct: 316 NTSLPPSILEDSLENNEGVP-SPMLSISNL--------TQEQVQDYVNKTNSHLPAGKQV 366
Query: 302 QISL 305
+ISL
Sbjct: 367 EISL 370
Score = 43.1 bits (101), Expect = 1e-04
Identities = 60/338 (17%), Positives = 92/338 (27%), Gaps = 136/338 (40%)
Query: 83 TLAIEGENLEMTELL------IVMGVEPK-----DALLQAINSEFVE-----------AV 120
A + E EL+ + VEP D +L +EF A
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 121 ELLLEYEEIVHKEGEP---Y-----LSRKPPKSCQNTAYRILLLLVSQRADVILLEYLGV 172
+LL E + + K E Y ++++P N+A L + L+ G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGEGNAQLVAIFG- 161
Query: 173 TDNHITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWKDGLYRYLKDMWNFIDFTRNLLY 232
GQ G Y E L LY +T Y L + I F+ L
Sbjct: 162 ------GQ--GNTDDYFEELRDLY-------QT--------YHVLVG--DLIKFSAETLS 196
Query: 233 VLVFMLRAMAYVQQQAEIEANESSKFLGREHWNAFDPQLIAEGLFAGANVFSALKLVHLF 292
L+ ++ K + G N+ L+
Sbjct: 197 ELIR--------------TTLDAEKVFTQ-----------------GLNILEWLE----- 220
Query: 293 SINPHLGPLQISLGRMIIDIVKFFFIYTLVLLSF-ACGLNQLLWYFTELERKDCYSTMSS 351
NP P + + + + S G+ QL Y T
Sbjct: 221 --NPSNTPDKD------------YLLSIPI--SCPLIGVIQLAHY---------VVTAKL 255
Query: 352 TGALNPSEDPNWEE----HD---------AACSKWRSF 376
G P E ++ + H A W SF
Sbjct: 256 LG-FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Score = 40.8 bits (95), Expect = 8e-04
Identities = 34/194 (17%), Positives = 59/194 (30%), Gaps = 76/194 (39%)
Query: 9 FWFQVGVEIEGPGIVHTQPFDMPNLPTPLTLEEKK--------YLLSVERGDTATVRKCI 60
F+ +GV + + + +LP P LE+ +LS+ V+ +
Sbjct: 304 FF--IGVR------CY-EAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 61 KRAYRNHHIDINCVDPLGRS-ALTLAIEGENLEMTELLIVMGVEPKDALLQAINSEFVEA 119
+ N H+ P G+ ++L +NL +V G P+ L +N
Sbjct: 354 NKT--NSHL------PAGKQVEISLVNGAKNL------VVSG-PPQS--LYGLNLTL--- 393
Query: 120 VELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADVILLEYLGVTDNHITG 179
K + P Q+ RI S+R +L V
Sbjct: 394 -----------RKA------KAPSGLDQS---RIPF---SERKLKFSNRFLPVA------ 424
Query: 180 QQRGLAP---SYLE 190
+P L
Sbjct: 425 -----SPFHSHLLV 433
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 45.9 bits (110), Expect = 1e-05
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TPL L+ + G V + + + N + G + L L + ++ +
Sbjct: 247 TPL-------HLAAQEGHAEMVALLL-----SKQANGNLGNKSGLTPLHLVAQEGHVPVA 294
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
++LI G V+ L A + ++ V+ LL++
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
++ + N G + L +A ++E L+ L A V
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 119 AVELLLEYE---EIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
ELLLE + K G L + + I+ LL+ +
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLH----VAVHHNNLDIVKLLLPRGGSP 205
Score = 44.8 bits (107), Expect = 3e-05
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
I G + L +A +L + + L+ G + L A + E
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 120 VELLLEYE---EIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
+ LL+ + K+ + L + + ++ LL+ A+
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHC----AARIGHTNMVKLLLENNANP 106
Score = 44.4 bits (106), Expect = 3e-05
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TPL ++ G TV + C+ G + L +A + + +
Sbjct: 115 TPL-------HIAAREGHVETVLALL-----EKEASQACMTKKGFTPLHVAAKYGKVRVA 162
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLE 125
ELL+ L A++ ++ V+LLL
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Score = 43.6 bits (104), Expect = 7e-05
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ +N ++ L A + M +LL+ L A VE
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Query: 119 AVELLLEY 126
V LLE
Sbjct: 128 TVLALLEK 135
Score = 42.9 bits (102), Expect = 1e-04
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFVE 118
N G + L +A+ NL++ +LL+ G P L A VE
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE 226
Query: 119 AVELLLEY 126
LL+Y
Sbjct: 227 VARSLLQY 234
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 14/109 (12%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ N G + L LA + + EM LL+ + L V
Sbjct: 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVP 292
Query: 119 AVELLLEYE---EIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
++L+++ + + G L + +++ L+ +ADV
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLH----VASHYGNIKLVKFLLQHQADV 337
Score = 42.1 bits (100), Expect = 2e-04
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
N + + L +A + E+ + L+ V K L A
Sbjct: 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN 94
Query: 119 AVELLLEY 126
V+LLLE
Sbjct: 95 MVKLLLEN 102
Score = 40.6 bits (96), Expect = 5e-04
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ G + L +A + +E+ L+ G + L A E
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE 259
Query: 119 AVELLLEY 126
V LLL
Sbjct: 260 MVALLLSK 267
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFVE 118
H D+N LG S L A + + ++ LL+ G P L A ++
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYIS 391
Query: 119 AVELLLEY 126
++L
Sbjct: 392 VTDVLKVV 399
Score = 35.9 bits (84), Expect = 0.018
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
+PL + ++G T V + + N V G + L +A + +T
Sbjct: 346 SPL-------HQAAQQGHTDIVTLLL-----KNGASPNEVSSDGTTPLAIAKRLGYISVT 393
Query: 95 ELLIVMGVEPKDALLQAINSE-FVEAVELLLEY 126
++L V+ E L+ + F E V+ +L+
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPETVDEILDV 426
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 44.9 bits (107), Expect = 1e-05
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 21/100 (21%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TP + + D + + + D++ VD GR+AL + +
Sbjct: 47 TPW-------WTAARKADEQALSQLL------EDRDVDAVDENGRTALLFVAGLGSDKCV 93
Query: 95 ELLIVMG--VEPKD------ALLQAINSEFVEAVELLLEY 126
LL G ++ +D AL A E VE L+E
Sbjct: 94 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Score = 36.4 bits (85), Expect = 0.010
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG----VEPKDALLQAINSEFVEAVELLLE 125
DI D G +AL LA E + G +E +L+ E+ E E++ +
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 45.6 bits (109), Expect = 1e-05
Identities = 22/149 (14%), Positives = 49/149 (32%), Gaps = 26/149 (17%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TPL + ++E + + + + ++ + G S L AI ++
Sbjct: 175 TPL-------MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQ 147
+ MG V +D L ++ + V + LL+ ++ + PY + +
Sbjct: 228 MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287
Query: 148 NTAYRILL------------LLVSQRADV 164
+ LL + +V
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLDEV 316
Score = 42.2 bits (100), Expect = 2e-04
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPKD-----ALLQAINSEFVEAV 120
+ + G +AL LA + ++ + L +G + A+ + + V
Sbjct: 41 ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100
Query: 121 ELLLEY 126
L+E
Sbjct: 101 VALVEG 106
Score = 41.8 bits (99), Expect = 2e-04
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
++ D + +A + LI G ++ AL A V+
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 119 AVELLLE 125
+ L
Sbjct: 68 TAKYLAS 74
Score = 41.4 bits (98), Expect = 3e-04
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG-------VEPKD-----ALLQAIN 113
D + L A+E N E +L++ ++ + L AI
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220
Query: 114 SEFVEAVELLLEY 126
+ + +E
Sbjct: 221 INWEDVAMRFVEM 233
Score = 34.1 bits (79), Expect = 0.061
Identities = 1/33 (3%), Positives = 7/33 (21%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
++ G + + + +
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 18/127 (14%)
Query: 49 ERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD 106
G+ V++ + D + + G +AL AI G N + + LI G V D
Sbjct: 30 LTGELEVVQQAV-----KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 107 -----ALLQAINSEFVEAVELLLEY----EEIVHKEGEPYLSRKPPKSCQNTAYRILLLL 157
L A + L+++ +G + + L
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC--DPYREGYADCATYL 142
Query: 158 VSQRADV 164
+
Sbjct: 143 ADVEQSM 149
Score = 33.4 bits (77), Expect = 0.071
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 66 NHHIDINCVDPLGRSALTL----AIEGENLEMTELLIVMGVEP--KD-----ALLQAINS 114
+ L L A+ G LE+ + + +P + AL AI
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTG-ELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64
Query: 115 EFVEAVELLLEY 126
V+ L+
Sbjct: 65 ANYSIVDFLITA 76
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 43.2 bits (103), Expect = 4e-05
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
N H D+N VD LG+SAL A N++ +L+ G + ++ L A E
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 119 AVELLLEY 126
++LL++
Sbjct: 173 TAKVLLDH 180
Score = 41.2 bits (98), Expect = 2e-04
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
+ + + + + L LA + E ++L+ + D A +
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 206
Query: 120 VELLLEY 126
V LL EY
Sbjct: 207 VRLLDEY 213
Score = 39.7 bits (94), Expect = 7e-04
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFVE 118
D N D +GR+ L A+ + + ++LI ++ + L+ A
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106
Query: 119 AVELLLEY 126
+E L+
Sbjct: 107 MLEDLINS 114
Score = 35.5 bits (83), Expect = 0.015
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 66 NHHIDI-NCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFV 117
+ N D G +AL LA + + L+ +D L A++++
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71
Query: 118 EAVELLLEY 126
++L+
Sbjct: 72 GVFQILIRN 80
Score = 35.1 bits (82), Expect = 0.019
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPKDAL 108
+H + + D + R +A E + ++ LL + L
Sbjct: 179 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 43.3 bits (102), Expect = 5e-05
Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 63 AYRNHHI-----------DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD--- 106
AY D R+AL A + E+ E L+ +G V KD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 107 --ALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
L A ++ E V+ LL V+ + + + I ++L+ A+
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 165 ILLEYLGVTDNHITGQQ 181
++ T H +
Sbjct: 133 DAKDHYDATAMHRAAAK 149
Score = 32.5 bits (74), Expect = 0.17
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 72 NCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLL 124
CV LA G+ E+ E ++ D AL A ++ E VE LL
Sbjct: 3 GCVS--NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 60
Query: 125 EY 126
+
Sbjct: 61 QL 62
Score = 27.5 bits (61), Expect = 6.4
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
I + ++ L +A L + + G E
Sbjct: 193 TQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEA 229
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 43.6 bits (104), Expect = 6e-05
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+++ + D + L LA + + +LL+ G V KD L A + E
Sbjct: 46 PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE 105
Query: 119 AVELLLEY 126
ELLL++
Sbjct: 106 VTELLLKH 113
Score = 42.5 bits (101), Expect = 1e-04
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
++N + + L +A E + ++ E+L G + D AL +A + ++
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ 294
Query: 119 AVELLLEY 126
LLL Y
Sbjct: 295 TCRLLLSY 302
Score = 40.9 bits (97), Expect = 4e-04
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFVE 118
H +N +D + L A +E+ LL+ G +P + A+ A E E
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Query: 119 AVELLLEYEEIVH 131
+ + ++
Sbjct: 172 RLTYEFKGHSLLQ 184
Score = 39.8 bits (94), Expect = 0.001
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H +N +D LG++AL A +L+ LL+ G A E
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NE 322
Query: 119 AVELLLE 125
AV+ +L
Sbjct: 323 AVQQILS 329
Score = 38.2 bits (90), Expect = 0.003
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLE 125
+H D V+ G+SA+ +A E E +LLQA + V+ L
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRERLTYEF-----KGHSLLQAAREADLAKVKKTLA 199
Query: 126 YEEIVHKE 133
E I K+
Sbjct: 200 LEIINFKQ 207
Score = 35.9 bits (84), Expect = 0.015
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDPLGRSAL-TLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFV 117
+ + L A G ++ LL + D L A V
Sbjct: 12 DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRV 71
Query: 118 EAVELLLEY 126
V+LLL++
Sbjct: 72 RIVQLLLQH 80
Score = 29.8 bits (68), Expect = 1.4
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 63 AYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGV---EPKD---ALLQAINSEF 116
A + + G S L A E + ++ + L + + +P+ AL A+ S
Sbjct: 164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223
Query: 117 ---VEAVELLLEY 126
+ ELLL
Sbjct: 224 PKRKQVAELLLRK 236
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 42.4 bits (101), Expect = 8e-05
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 68 HIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAV 120
H++ RS L A E ++++ +L+ G ++ L++A + +EAV
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 121 ELLLE 125
+ L++
Sbjct: 61 KYLIK 65
Score = 39.3 bits (93), Expect = 0.001
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+I+ R+ L A E +LE + LI G V+PKD L A E
Sbjct: 32 QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE 91
Query: 119 AVELLLE 125
V+ LL
Sbjct: 92 VVQYLLS 98
Score = 38.9 bits (92), Expect = 0.001
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
D++ V+ G S L +A + L + V K+ L A + V
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Query: 119 AVELLLEY 126
+ + +
Sbjct: 225 SALQMSKA 232
Score = 38.9 bits (92), Expect = 0.001
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 18/82 (21%)
Query: 63 AYRNHH-----------IDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD--- 106
A + H+ +D+NC D G + + A E +++++ +LL+ G + +D
Sbjct: 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144
Query: 107 --ALLQAINSEFVEAVELLLEY 126
L A S V+ E+LL
Sbjct: 145 NICLHWAAFSGCVDIAEILLAA 166
Score = 36.6 bits (86), Expect = 0.006
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFV 117
++ D G + L LA + + E+ + L+ G V +D ++ A + V
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 118 EAVELLLEY 126
+ V+LLL
Sbjct: 125 DLVKLLLSK 133
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 42.9 bits (102), Expect = 9e-05
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 45 LLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--V 102
L + GDT V + + DIN + G +AL A +N++M + L+ G +
Sbjct: 45 LAACSSGDTEEVLRLL-----ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 103 EPKD-----ALLQAINSEFVEAVELLLEY 126
D L A + +++ E L+
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQ 128
Score = 39.8 bits (94), Expect = 8e-04
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 26/99 (26%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
+ + +++L S HI+ G +AL +A E+
Sbjct: 175 RIMLRDARQWLNS-------------------GHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
+LLI V KD L A + EA +L+E
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Score = 34.8 bits (81), Expect = 0.036
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLI-VMGVEPKDALLQAINSEFVEAVELLLEY 126
+ V+ G + L +A E E+ + + GV+ + A + +A + L
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188
Score = 27.5 bits (62), Expect = 8.0
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+ D+ V+ +G++A +A E + EL
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 42.8 bits (102), Expect = 9e-05
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFV 117
+H D+N G++ L LA+E ++L + + L+ + D ALL A+ +
Sbjct: 207 DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK 266
Query: 118 EAVELLLE 125
+ ELL +
Sbjct: 267 KIAELLCK 274
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H D G + LA ++++ +L + G V D A ++A V+
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 119 AVELLLEY 126
A++ L +
Sbjct: 120 ALKFLYKR 127
Score = 38.6 bits (91), Expect = 0.002
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD---------------AL 108
+ D+N D G +A A ++ + L G V + AL
Sbjct: 93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152
Query: 109 LQAINSEFVEAVELLLEYE----EIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
+ A VE +++LL+ G L S + I LL+ ADV
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212
Score = 36.7 bits (86), Expect = 0.008
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD------ALLQAINSEFVEAVELLLEY 126
L A++ E++++ + L+ G V ++ L A+ + VELLL +
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 41.7 bits (99), Expect = 1e-04
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 21/100 (21%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TP + + D + + + D++ VD GR+AL + +
Sbjct: 46 TPW-------WTAARKADEQALSQLL------EDRDVDAVDENGRTALLFVAGLGSDKCV 92
Query: 95 ELLIVMG--VEPKD------ALLQAINSEFVEAVELLLEY 126
LL G ++ +D AL A E VE L+E
Sbjct: 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Score = 34.8 bits (81), Expect = 0.021
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLLEY 126
DI D G +AL LA E + G I E + + +L
Sbjct: 135 DIEVEDERGLTALELAREILKTTPKGNPMQFGRR--------IGLE--KVINVLEGQ 181
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 16/103 (15%)
Query: 31 PNLPTPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGEN 90
T L L +V D ++ I + +++ G +AL +N
Sbjct: 167 EPDETALHL-------AVRSVDRTSL--HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217
Query: 91 LEMTELLIVMGVEP-------KDALLQAINSEFVEAVELLLEY 126
E +LL+ + L A + ELL +
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 32.7 bits (74), Expect = 0.14
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 10/114 (8%)
Query: 23 VHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSAL 82
+ + R ++ I + +AL
Sbjct: 114 YMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL 173
Query: 83 TLAIEGEN---LEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
LA+ + L + + L+ ++ + AL ++ E ++LLL
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 42.1 bits (100), Expect = 1e-04
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG------VEPKD-----ALLQAINS 114
+D G++A LA E + L+ +E ++ AL A+N+
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Query: 115 EFVEAVELLLEY----EEIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
E E V+LLLE + + K G L + +N + ++ LL+ A+V
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIH----AVENNSLSMVQLLLQHGANV 176
Score = 40.9 bits (97), Expect = 3e-04
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 48 VERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPK 105
V +G+ V + + ++ +++ + L ++ L LA+ + LL+ G
Sbjct: 17 VVQGNLPAVHRLVNL-FQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75
Query: 106 D-----ALLQAINSEFVEAVELLLEY 126
D A A + LL+
Sbjct: 76 DRHGQTAAHLACEHRSPTCLRALLDS 101
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H ++N G SAL A L + L+ G K+ L+ A + ++
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230
Query: 119 AVELLLEY 126
+
Sbjct: 231 ILRGKATR 238
Score = 32.8 bits (76), Expect = 0.13
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 71 INCVDPLGRSALTLAIEGENLEMTELLIVMG------VEPKD-----ALLQAINSEFVEA 119
D G + L +A+ NL L+ + ++ + L A+ +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 120 VELLLE 125
V LL+
Sbjct: 62 VRLLVT 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 40.4 bits (96), Expect = 2e-04
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
+ + + R+ L +A + + E+L+ G V KD AL A E
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
Query: 120 VELLLEY 126
VELL++Y
Sbjct: 116 VELLIKY 122
Score = 38.1 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
H D+N D L +AL A E + E+ ELLI G V + A +I++ +
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 120 VELL 123
E+L
Sbjct: 149 AEIL 152
Score = 35.1 bits (82), Expect = 0.014
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ D LG S L LA + + TE+L+ G + + L A +
Sbjct: 23 ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN 81
Query: 119 AVELLLEY 126
VE+LL++
Sbjct: 82 IVEVLLKH 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 65/403 (16%), Positives = 114/403 (28%), Gaps = 117/403 (29%)
Query: 2 IVKAQFNFWFQV-------GVEIEGPGIVHTQPFDMPNLPTPLTLEEKKYLLS----VER 50
A FN ++ V + T + + LT +E K LL
Sbjct: 258 AWNA-FNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 51 GDT-ATVRKC-------IKRAYRNHHIDINCVDPLGRSALTLAIEG--ENL---EMTELL 97
D V I + R+ + + LT IE L E ++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 98 IVMGVEPKDA-----LLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYR 152
+ V P A LL I + +++ +V+K + L K PK +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDV-----MVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 153 ILLLLVSQRADVILLEYLGVTDNH--ITGQQRGLAPSYLEYLVLLYVAGYIWEETCEVWK 210
I L L + + L H I + L+ Y+ Y
Sbjct: 431 IYLELKVKLENEYAL--------HRSIVDHYNIPKTFDSDDLIPPYLDQYF--------- 473
Query: 211 DGLYRYL------KDMWNFIDFTRNLLYVLVFMLRAMAYVQQQAEIEANESSKFLGREHW 264
Y ++ + + R + F+ + +I + ++ W
Sbjct: 474 ---YSHIGHHLKNIEHPERMTLFRMVFLDFRFL---------EQKIRHDSTA-------W 514
Query: 265 NAFDPQLIAEGLFAGANVFSALKLV--HLFSINPHLGPLQISLGRMIIDIVKFFFIYTLV 322
NA L N LK ++ +P R++ I+ F
Sbjct: 515 NASGSIL---------NTLQQLKFYKPYICDNDPK-------YERLVNAILDFL------ 552
Query: 323 LLSFACGLNQLLWYFTELERKDCYSTMSSTGALNPSEDPNWEE 365
N + +T+L R AL ++ +EE
Sbjct: 553 ---PKIEENLICSKYTDLLRI----------ALMAEDEAIFEE 582
Score = 33.3 bits (75), Expect = 0.14
Identities = 53/368 (14%), Positives = 108/368 (29%), Gaps = 107/368 (29%)
Query: 70 DINC--VDPLGRSALT------LAIEGENLEMTELLIVMGVEPKDALLQAINS---EFVE 118
+ +C V + +S L+ + + + + T L LL +FVE
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-------WTLLSKQEEMVQKFVE 84
Query: 119 AVELLLEYE---EIVHKEG-EPYLSRKPPKSCQNTAYRILLLLVSQRADVILLEYLGVT- 173
V L + Y+ + E +P + + ++ Y D + V+
Sbjct: 85 EV-LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----------DNQVFAKYNVSR 133
Query: 174 DNHITGQQRGLA---PSYLEYLVLLYVAGYIWEETC---EVWKDGLYRYLKDM-----WN 222
++ L P+ + +++ V G +T +V Y+ M W
Sbjct: 134 LQPYLKLRQALLELRPA--KNVLIDGVLGS--GKTWVALDVCLS--YKVQCKMDFKIFW- 186
Query: 223 FIDFTR------------NLLYVLVFMLRAMAYVQQQAEIEANESSKFLGR--------- 261
++ LLY + + + ++ + L R
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 262 -----------EHWNAFDPQ---LIAEGLFAGANVFSALKLVHLFSINPHLGPLQISLGR 307
+ WNAF+ L+ + SA H+ S++ H L +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVK 304
Query: 308 MIIDIVKFFFIYTLVLLSFACGLNQLL--------------W-YFTELERKDCYSTM-SS 351
+ ++K+ L N W + + + + SS
Sbjct: 305 SL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 352 TGALNPSE 359
L P+E
Sbjct: 363 LNVLEPAE 370
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 41.4 bits (98), Expect = 2e-04
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 46 LSVERGDTATVRKCIKR-AYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--V 102
L+ E+G A+V + + H + + G + L LA L + ELL+ +G V
Sbjct: 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 103 EPKD------ALLQAINSEFVEAVELLLEY 126
++ AL A++ + + V LLL+
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP- 104
L++ + A + I++ +N + L ++ L LA+ E+ E L+ G +P
Sbjct: 14 LAIIHEEKALTMEVIRQVK-GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE 72
Query: 105 -KD-----ALLQAINSEFVEAVELLLEY 126
+D L A + +V +L +
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQS 100
Score = 38.3 bits (90), Expect = 0.002
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQAINSEFVE 118
D+N V G S L + + + L + +E +D SEF E
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231
Query: 119 AVE 121
E
Sbjct: 232 FTE 234
Score = 37.1 bits (87), Expect = 0.006
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--------VEPKD-----ALLQAI 112
D D G + L LA E L +L ++ + L A
Sbjct: 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 113 NSEFVEAVELLLE 125
++ VELL+
Sbjct: 126 IHGYLGIVELLVS 138
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 41.8 bits (99), Expect = 2e-04
Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 7/108 (6%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
++ + LG++AL LA E L G V + AL A +
Sbjct: 37 YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACV 96
Query: 123 LLEYEEIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADVILLEYL 170
LL+ ++ + +T++ + +
Sbjct: 97 LLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144
Score = 41.0 bits (97), Expect = 3e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDP-LGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFV 117
+ D+N +P GR+ L LA+E + + ELL+ G +P + L A+
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238
Query: 118 EAVELLLEY 126
LL +
Sbjct: 239 ILARLLRAH 247
Score = 40.6 bits (96), Expect = 4e-04
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
D GR+ L A+ N + LL G + + +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272
Query: 119 AVELLLEYEE 128
+ EY++
Sbjct: 273 NRDEGDEYDD 282
Score = 39.5 bits (93), Expect = 0.001
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD------ALLQAINSEFV 117
+ + + + G + L +A+ ++ EM LL G + + L A+ ++
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 118 EAVELLLEY 126
+ELLL+
Sbjct: 206 SVLELLLKA 214
Score = 33.3 bits (77), Expect = 0.10
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 10/66 (15%)
Query: 71 INCVDPLGRSALTLAIEGENLEMTELLI-----VMGVEPKD-----ALLQAINSEFVEAV 120
V G +AL LA+ ++ + L+ ++ ++ AL A V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 121 ELLLEY 126
E L
Sbjct: 62 EKLYAA 67
Score = 31.7 bits (73), Expect = 0.28
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 33/113 (29%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
T L L+ G+ +TV K + + G +AL LA
Sbjct: 47 TAL-------HLAAILGEASTVEKLY-----AAGAGVLVAERGGHTALHLACRVRAHTCA 94
Query: 95 ELLIVMGVEPK---------------------DALLQAINSEFVEAVELLLEY 126
+L+ A + + + E ++
Sbjct: 95 CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 40.8 bits (97), Expect = 2e-04
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
H ++N + G + L +A + E+ + L+ +G + +D A A E
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Query: 120 VELLLEY 126
+++ E
Sbjct: 183 IKIFTEV 189
Score = 40.5 bits (96), Expect = 3e-04
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ ++N D G++ L +I EM+ L+ G V ++ L+ A E
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 119 AVELLLEY 126
V+ LLE
Sbjct: 149 IVKKLLEL 156
Score = 38.9 bits (92), Expect = 9e-04
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
+ + D G +AL A++ L + E L+ G V KD L+ +I + E
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Query: 120 VELLLEY 126
LLE+
Sbjct: 117 SYFLLEH 123
Score = 37.4 bits (88), Expect = 0.003
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 63 AYRNHH----IDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQA 111
++ + N D R+ L +A + L+ +E KD AL+ A
Sbjct: 16 DEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWA 75
Query: 112 INSEFVEAVELLLEY 126
+ + + E LL
Sbjct: 76 VKNNRLGIAEKLLSK 90
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 41.3 bits (98), Expect = 2e-04
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
N H D+N VD LG+SAL A N++ +L+ G + ++ L A E
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 204
Query: 119 AVELLLEY 126
++LL++
Sbjct: 205 TAKVLLDH 212
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFV 117
D N D +GR+ L A+ + + ++LI ++ + L+ A
Sbjct: 78 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE 137
Query: 118 EAVELLLEY 126
+E L+
Sbjct: 138 GMLEDLINS 146
Score = 34.0 bits (79), Expect = 0.062
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 66 NHHIDI-NCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFV 117
+ N D G +AL LA + + L+ + +D L A++++
Sbjct: 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 118 EAVELLLE 125
++L+
Sbjct: 104 GVFQILIR 111
Score = 33.6 bits (78), Expect = 0.067
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+H + + D + R +A E + ++ LL
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 39.7 bits (94), Expect = 2e-04
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
+ D+N D G + L LA +LE+ E+L+ G V D L A +E
Sbjct: 36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 120 VELLLEY 126
E+LL++
Sbjct: 96 AEVLLKH 102
Score = 33.1 bits (77), Expect = 0.053
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
H D+N D G++A ++I N ++ E+L
Sbjct: 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 27.0 bits (61), Expect = 6.7
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+H D+ L A + +L+ G V KD L A +E
Sbjct: 9 HHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 119 AVELLLEY 126
VE+LL+
Sbjct: 62 IVEVLLKN 69
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 41.4 bits (98), Expect = 3e-04
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD---ALLQAINSEFVEAVELLL 124
D D G SA AI N+ + L+ G + L QA E + V++LL
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82
Query: 125 E 125
Sbjct: 83 F 83
Score = 40.6 bits (96), Expect = 5e-04
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 66 NHHIDINCVDPLGRS-ALTLAIEGENLEMTELLIVMGVEPKDALLQAINSEFVEAVELLL 124
++ N + L + LAI+ +++EM + L + A L+ + + E ++++
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMII 241
Query: 125 EY 126
E
Sbjct: 242 EK 243
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD------ALLQAINSEFV 117
+D + D G +AL A++ N++ +L + + + A+ V
Sbjct: 83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 142
Query: 118 EAVELLLEYEEIVHK 132
V L
Sbjct: 143 SIVSYFLSEIPSTFD 157
Score = 31.7 bits (73), Expect = 0.33
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 17/81 (20%)
Query: 63 AYRNH---------HIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD----- 106
N I + S + + I+ +++M LL+ +
Sbjct: 137 VMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196
Query: 107 -ALLQAINSEFVEAVELLLEY 126
+ AI+++ +E ++ L +Y
Sbjct: 197 PDIKLAIDNKDIEMLQALFKY 217
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 40.7 bits (96), Expect = 4e-04
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 27/154 (17%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
PL + +RG+ + +R+C+ + + +N +D G +AL A G + ++
Sbjct: 75 NPL-------HEAAKRGNLSWLRECLD-----NRVGVNGLDKAGSTALYWACHGGHKDIV 122
Query: 95 ELLIVMG---VEPKD-----ALLQAINSEFVEAVELLLEYE---EIVHKEGEPYLSRKPP 143
E+L + ++ AL A + + V+LLL ++ + E +
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM--- 179
Query: 144 KSCQNTAYRILLLLVSQRADVILLEYLGVTDNHI 177
+ +L A L D+
Sbjct: 180 -ATNAACASLLKKKQGTDAVRTLSNAEDYLDDED 212
Score = 33.8 bits (78), Expect = 0.061
Identities = 18/113 (15%), Positives = 27/113 (23%), Gaps = 23/113 (20%)
Query: 35 TPL-------TLEEKKYLLSVE--------RGDTATVRKCIK-RAYRNHHIDINCVDPLG 78
+ L E DT + K R +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESI 73
Query: 79 RSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLL 124
+ L A + NL + V D AL A + + VE+L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF 126
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 41.1 bits (96), Expect = 4e-04
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQAINSEFVEA 119
+ ++ G +AL A + +LL+ + AL A E
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 120 VELLLE 125
ELL +
Sbjct: 275 EELLEQ 280
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 39.7 bits (94), Expect = 4e-04
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFVE 118
D+N D G L LA + +L + E L+ V ++ A A E
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE 151
Query: 119 AVELLLEY 126
V L+
Sbjct: 152 VVSLMQAN 159
Score = 37.4 bits (88), Expect = 0.002
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ + D G + + A L+ + L+ V +D L A +
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 119 AVELLLEY 126
VE L+++
Sbjct: 118 VVEFLVKH 125
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 39.7 bits (94), Expect = 4e-04
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H D++ D G L A + E+ ELL+ G V D L +A E
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 119 AVELLLEY 126
+LLL++
Sbjct: 123 ICKLLLQH 130
Score = 35.8 bits (84), Expect = 0.007
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
++ ++ + L A + + E L+ G V KD L A + E
Sbjct: 30 VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89
Query: 119 AVELLLEY 126
ELL+++
Sbjct: 90 VAELLVKH 97
Score = 29.7 bits (68), Expect = 0.89
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
H D + G + L L +G + ++ +LL
Sbjct: 130 HGADPTKKNRDGNTPLDLVKDG-DTDIQDLLR 160
Score = 28.5 bits (65), Expect = 2.0
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFVEAVELLLEY 126
L A + ++E + L + + L A V VE LL++
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ +N + S L A G +L ++L+ G V L A S +
Sbjct: 80 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 139
Query: 119 AVELLLEY 126
V LLL++
Sbjct: 140 CVNLLLQH 147
Score = 35.9 bits (84), Expect = 0.013
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 63 AYRNHH----------IDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-KD----- 106
A R H +I+ + L LA E + + L+ G + +
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDS 224
Query: 107 ALLQAINSEFVEAVELLLEY 126
L + + E LL+++
Sbjct: 225 PLHAVVRTASEELACLLMDF 244
Score = 34.8 bits (81), Expect = 0.030
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H + S + A ++E LI G ++ K L A ++
Sbjct: 146 QHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 119 AVELLLE 125
V+ LLE
Sbjct: 205 CVKKLLE 211
Score = 33.6 bits (78), Expect = 0.074
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEA 119
+ + + V S + A + LI G V L +A +
Sbjct: 50 NPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC 107
Query: 120 VELLLEY 126
V++LL++
Sbjct: 108 VKILLKH 114
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 39.4 bits (93), Expect = 8e-04
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ ++ VD G + L +A+ ++E+ + LI G + ++ L A E
Sbjct: 27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86
Query: 119 AVELLLEY 126
+ +L++
Sbjct: 87 ILAYMLKH 94
Score = 38.2 bits (90), Expect = 0.002
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 23/87 (26%)
Query: 63 AYRNHH-----------IDINCVDPLGRSALTLAIEGEN-----LEMTELLIVMG--VEP 104
A + H DI+ + G +AL A+ ++ +LL+ G
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173
Query: 105 KD-----ALLQAINSEFVEAVELLLEY 126
KD A+ A + E ++L +Y
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 35.5 bits (83), Expect = 0.014
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 69 IDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEF---- 116
D+N + G +AL A E +++ +LL+ G ++ ++ AL++A+
Sbjct: 97 PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 117 -VEAVELLLEY 126
+ V+LL+E
Sbjct: 157 YQDIVKLLMEN 167
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 39.7 bits (94), Expect = 9e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ +N + S L A G +L ++L+ G V L A S +
Sbjct: 24 SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 119 AVELLLEY 126
V LLL++
Sbjct: 84 CVNLLLQH 91
Score = 38.2 bits (90), Expect = 0.002
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 63 AYRNHH----------IDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-KD----- 106
A R H +I+ + L LA E + + L+ G + +
Sbjct: 109 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDS 168
Query: 107 ALLQAINSEFVEAVELLLEY 126
L + E LL+++
Sbjct: 169 PLHAVARTASEELACLLMDF 188
Score = 35.5 bits (83), Expect = 0.021
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H + S + A ++E LI G ++ K L A ++
Sbjct: 90 QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 148
Query: 119 AVELLLEY 126
V+ LLE
Sbjct: 149 CVKKLLES 156
Score = 30.5 bits (70), Expect = 0.77
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
S + A + LI G V L +A + V++LL++
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH 58
Score = 28.9 bits (66), Expect = 2.2
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+ + ++ ++T+L++
Sbjct: 218 EREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 38.6 bits (91), Expect = 0.001
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 48 VERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPK 105
G+ VR + N D+N D G S L A + E+LI+ G +
Sbjct: 13 CREGNAVAVRLWLD----NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 106 D-----ALLQAINSEFVEAVELLLEY 126
+ L A + + V+ LL+Y
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQY 94
Score = 34.3 bits (80), Expect = 0.028
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQAINSEFVEAVEL 122
IN ++ + L LA + ++ + L+ + + L A + E
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAED 123
Query: 123 LLEYE---EIVHKEGEPYLSRKPPKSCQNTAYRILLLLVSQRADV 164
L+ I +K GE + K+ + ++
Sbjct: 124 LVANGALVSICNKYGEMPVD----KAKAPLRELLRERAEKMGQNL 164
Score = 34.3 bits (80), Expect = 0.031
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ DIN V+ G L A ++ E L+ G V + + +A
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
Query: 119 AVELLLEY 126
E +
Sbjct: 153 LRERAEKM 160
Score = 28.6 bits (65), Expect = 2.1
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG 101
+ ++ + G + A + E MG
Sbjct: 126 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 37.4 bits (88), Expect = 0.002
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 49 ERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD 106
+GD +V ++ + D N D G + L A +L++ ELL+ V
Sbjct: 19 IKGDIPSVEYLLQ-----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 107 -----ALLQAINSEFVEAVELLLEY 126
L A + V+ V+LLL Y
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 33.2 bits (77), Expect = 0.052
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 69 IDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVE 121
ID + G + L +A ++ E L+ G KD L +A N ++ VE
Sbjct: 2 IDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 122 LLLEY 126
LLL++
Sbjct: 61 LLLQH 65
Score = 27.0 bits (61), Expect = 5.2
Identities = 4/29 (13%), Positives = 8/29 (27%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLI 98
N V+ G + + + L
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKSLLLLPE 129
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 23/104 (22%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
+PL LL+ + D + K +K +++ +G +AL +A +NLE
Sbjct: 5 SPL-------LLAAKENDVQALSKLLK----FEGCEVHQRGAMGETALHIAALYDNLEAA 53
Query: 95 ELLI-------VMGVEPKD-----ALLQAINSEFVEAVELLLEY 126
+L+ + + AL A+ ++ V V LL
Sbjct: 54 MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Score = 31.0 bits (71), Expect = 0.51
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 17/77 (22%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLE----MTELLIVMG--VEPKD-----------ALL 109
H DI D LG + L + I N M LL+ K
Sbjct: 143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK 202
Query: 110 QAINSEFVEAVELLLEY 126
A + + L++
Sbjct: 203 LAGVEGNIVMFQHLMQK 219
Score = 31.0 bits (71), Expect = 0.52
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 68 HIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAI---NSEFV 117
H + + G L+ A + E+ LLI G + +D L I N F
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170
Query: 118 -EAVELLLEY 126
+ LLL Y
Sbjct: 171 CQMYNLLLSY 180
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 66 NHHIDIN------CVDPLGRSALTLAIEGENLEMTELLI 98
++ + + G + LA N+ M + L+
Sbjct: 179 SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 38.9 bits (90), Expect = 0.002
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 60 IKRAYRNHHIDIN-CVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KD-----ALLQA 111
+ A+ N +++N VD G + L NLE+ + L+ G D L++A
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171
Query: 112 I---NSEFVEAVELLLEY 126
+ N+ E LL+Y
Sbjct: 172 VKSVNNYDSGTFEALLDY 189
Score = 34.6 bits (79), Expect = 0.037
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 65 RNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
+N D G + L +A N+ + + L+ G +P
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 38.2 bits (90), Expect = 0.002
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD--------ALLQAINSE 115
+ + D GR L ++ + E+T L+ V D A +
Sbjct: 24 SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG 83
Query: 116 FVEAVELLLE 125
+E V+ L +
Sbjct: 84 NLEVVKSLYD 93
Score = 38.2 bits (90), Expect = 0.002
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALLQAINSEFV 117
+ + D + L A +L++ ELL +G V +D L A+
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 118 EAVELLLE 125
+A LL+E
Sbjct: 188 DAAVLLVE 195
Score = 36.7 bits (86), Expect = 0.007
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 69 IDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVE 121
D+N + G + L LA+ + E+++ LI G V KD L +A + ++ +E
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 122 LLLEY 126
LL
Sbjct: 158 LLCGL 162
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLI---VMG--VEPKD-----ALLQAI---NSEF 116
D + RSAL A + M ++ + +E D AL+ +
Sbjct: 191 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250
Query: 117 VEAVELLLEY 126
V + +LL+E
Sbjct: 251 VASAKLLVEK 260
Score = 37.6 bits (88), Expect = 0.005
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
+ + D G++ + LA + +E+ LI G VE D A A + V++
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 364
Query: 123 LLEY 126
Sbjct: 365 FDRC 368
Score = 36.5 bits (85), Expect = 0.012
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+N +D + L LA+ + L+ G + AL QA + +
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217
Query: 123 LLE 125
+L
Sbjct: 218 MLN 220
Score = 33.8 bits (78), Expect = 0.080
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+ VD +A LA + + ++
Sbjct: 334 QQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 33.4 bits (77), Expect = 0.12
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 66 NHHIDINCVDPL--------GRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALL 109
++ GR+AL A + N+ + + L+ + +D ++
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 318
Query: 110 QAINSEFVEAVELLLE 125
A +E V L++
Sbjct: 319 LAAQEGRIEVVMYLIQ 334
Score = 33.4 bits (77), Expect = 0.12
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 16/75 (21%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG----------VEPKD-----ALLQ 110
++I R+ L + E +E LIV V D L+
Sbjct: 114 RESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 111 AINSEFVEAVELLLE 125
A+ + V L++
Sbjct: 173 AVLARRRRLVAYLMK 187
Score = 32.6 bits (75), Expect = 0.21
Identities = 6/74 (8%), Positives = 13/74 (17%), Gaps = 10/74 (13%)
Query: 62 RAYRNHHIDI--NCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAI 112
A + +I N + N + + + L
Sbjct: 43 EASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA 102
Query: 113 NSEFVEAVELLLEY 126
E +
Sbjct: 103 AGS-YAITEPITRE 115
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 36.6 bits (86), Expect = 0.003
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
+ +++ GD V+ + D+N GR L A + LE+
Sbjct: 9 KEF-------MWALKNGDLDEVKDYV-----AKGEDVNRTLEGGRKPLHYAADCGQLEIL 56
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLE 125
E L++ G + D LL A+ V V+LLL
Sbjct: 57 EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Score = 27.4 bits (62), Expect = 3.7
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD 106
DIN D + L A+ ++ +LL+ G K
Sbjct: 65 DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Score = 26.6 bits (60), Expect = 7.8
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
A++ +L+ + + G V L A + +E +E LL
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 37.0 bits (87), Expect = 0.003
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
+ D+N D G + L LA +LE+ E+L+ G V +D A +I++ +
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 119 AVELLLEY 126
E+L +
Sbjct: 161 LAEILQKL 168
Score = 36.6 bits (86), Expect = 0.005
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
L L + G VR + + D+N D G + L LA +LE+
Sbjct: 16 KKL-------LEAARAGRDDEVRILM-----ANGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
E+L+ G V D L A +E VE+LL+
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Score = 27.3 bits (62), Expect = 5.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
L A + +L+ G V +D L A + +E VE+LL+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 37.0 bits (87), Expect = 0.003
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
+ +G+ + I+ IN D G + L A + +
Sbjct: 5 LSV-------HQLAAQGEMLYLATRIE-----QENVINHTDEEGFTPLMWAAAHGQIAVV 52
Query: 95 ELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLE 125
E L+ G + AL A + + + V++LL+
Sbjct: 53 EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Score = 37.0 bits (87), Expect = 0.003
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+N D G + L A+ G +++ ++L+ G + ++ A+ + ++
Sbjct: 94 DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Query: 123 LLEY 126
+ +
Sbjct: 154 IESH 157
Score = 28.5 bits (65), Expect = 2.4
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 7/56 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
++ + I + D L+ A + VE LL+
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN 58
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 37.3 bits (87), Expect = 0.003
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG---------VEPKD-----ALLQAINSE 115
DI + + + I ++ E++ + + KD AL +
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165
Query: 116 FVEAVELLLEY 126
A++++ +Y
Sbjct: 166 KPIALKMMEDY 176
Score = 36.2 bits (84), Expect = 0.007
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD 106
+ + D G +AL + +++ K+
Sbjct: 143 SGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 34.3 bits (79), Expect = 0.029
Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 15/100 (15%)
Query: 40 EEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIV 99
E + + G + ++ + + L + +++ LI
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63
Query: 100 MG--VEPKD-----ALLQAINS------EFVEAVELLLEY 126
G ++ + E ++ LE
Sbjct: 64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 37.6 bits (88), Expect = 0.004
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 17/112 (15%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
D + + G +AL A+ + E+ + L+ G V D L A + V+
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 119 AVELLLEY----EEIVHKEGEPYLSRKPPK--SCQNTAYRILLLLVSQRADV 164
+ L+E + + + + K + + L + +
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAA----DKCEEMEEGYTQCSQFLYGVQEKM 165
Score = 35.7 bits (83), Expect = 0.014
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H + + +PL + L + ++ + +I + AL A+ + E
Sbjct: 26 AHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTE 84
Query: 119 AVELLLEY 126
V+ L+++
Sbjct: 85 IVKFLVQF 92
Score = 27.6 bits (62), Expect = 5.9
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD----ALLQAINSEFVEAVELLLE 125
G+ +L + I G V+ LL + + V+ ++
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 37.0 bits (87), Expect = 0.006
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQA-INSEFV 117
+ D + +D G S + LA + + + LI G V+ D L+ A + V
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 118 EAVELLLE 125
+ LLL
Sbjct: 157 DPTRLLLT 164
Score = 36.6 bits (86), Expect = 0.007
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD------ALLQAINSEFV 117
D+ D + L A +++ + I G V+ L A +
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 118 EAVELLLEY 126
V L++Y
Sbjct: 90 SMVVQLMKY 98
Score = 35.1 bits (82), Expect = 0.025
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 66 NHHIDINCVD-PLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFV 117
++ +N D +AL A+ N + LL+ G V+ ++ AL A + V
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNV 223
Query: 118 EAVELLLE 125
+ L E
Sbjct: 224 WMINHLQE 231
Score = 33.9 bits (79), Expect = 0.059
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 70 DINCVDP-LGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVE 121
++ + L + L A +L M L+ G D + A V
Sbjct: 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126
Query: 122 LLLEY 126
L+
Sbjct: 127 YLIAK 131
Score = 33.6 bits (78), Expect = 0.078
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 71 INCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELL 123
+ +D + A + E L+ G V D L A + ++ V+
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 124 LE 125
+
Sbjct: 62 IS 63
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 34.7 bits (81), Expect = 0.009
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+N G + L LA + + E+ +LL+ G V + A + E V+L
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKL 93
Query: 123 LLE 125
L
Sbjct: 94 LDA 96
Score = 27.7 bits (63), Expect = 2.3
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLE 125
G + L A + + E + L+ G V + L A + E V+LLL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 35.1 bits (82), Expect = 0.009
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
I+ + + L A +E L+ G + + + + EL
Sbjct: 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAEL 62
Query: 123 LLEY 126
LL +
Sbjct: 63 LLLH 66
Score = 30.1 bits (69), Expect = 0.52
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG 101
++ D GR + LA E + ++ L
Sbjct: 103 RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 35.5 bits (83), Expect = 0.010
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D + + SAL+LA G ++ LL+ + D LL A+ V+ VE
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 123 LLE 125
LL
Sbjct: 121 LLA 123
Score = 33.2 bits (77), Expect = 0.075
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 20/100 (20%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHID-INCVDPLGRSALTLAIEGENLEM 93
+ +G+ +++ ++ + +N D G + L A +E
Sbjct: 4 LSI-------HQLAAQGELDQLKEHLR-----KGDNLVNKPDERGFTPLIWASAFGEIET 51
Query: 94 TELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
L+ G AL A + + V LLLE
Sbjct: 52 VRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLER 91
Score = 27.8 bits (63), Expect = 4.4
Identities = 4/39 (10%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD 106
D+ G + + LA+ ++ +++ + +
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 33.9 bits (79), Expect = 0.012
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+N D GR+ L LA +LE+ +LL+ G V KD L A + +E V+L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 123 LLEY 126
LLE
Sbjct: 87 LLEA 90
Score = 28.1 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLEY 126
GR+ L LA +LE+ +LL+ G V KD L A + +E V+LLLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Score = 26.9 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG 101
D+N D GR+ L LA +LE+ +LL+ G
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 35.1 bits (82), Expect = 0.012
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
H D+N D G + LA++ + + L + +D L A+ +
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD 147
Query: 119 AVELLLE 125
V++L
Sbjct: 148 LVDILQG 154
Score = 32.4 bits (75), Expect = 0.11
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVE 118
N D G S + A L+ ++L+ G V D + A+
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115
Query: 119 AVELLLE 125
V L
Sbjct: 116 VVSFLAA 122
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 33.5 bits (78), Expect = 0.034
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+N D GR+ L LA +LE+ +LL+ G V KD L A + +E V+L
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 123 LLE 125
LLE
Sbjct: 87 LLE 89
Score = 28.9 bits (66), Expect = 1.1
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 78 GRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVELLLE 125
GR+ L LA +LE+ +LL+ G V KD L A + +E V+LLLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 27.3 bits (62), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLI 98
D+N D GR+ L LA +LE+ +LL+
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 34.4 bits (79), Expect = 0.043
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 45 LLSVERGDTATVRKCIKRAYRNHH------IDINCVDPLGRSALTLAIEGENLEMTELLI 98
+L+++ G A + ++ + + G SAL +AIE +L+ +LL+
Sbjct: 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLV 110
Query: 99 VMG--VEPKD------------------ALLQAINSEFVEAVELLLE 125
G V + L A ++ + V LLE
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157
Score = 31.3 bits (71), Expect = 0.43
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHI----------DINCVDPLGRSALTL 84
T L + L + ++ + Y + G + L L
Sbjct: 174 TVL------HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Query: 85 AIEGENLEMTELLIVMGVEPKDAL 108
A + +E+ ++ A
Sbjct: 228 AAKEGKIEIFRHILQREFSGAAAH 251
Score = 30.1 bits (68), Expect = 0.88
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 24/103 (23%)
Query: 48 VERGDTATVRKCIKRAYRNHHI---DINCVDPLGRSALTLAIEGEN---LEMTELLIVMG 101
V RG + ++ N G++ L A+ L+ +
Sbjct: 10 VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69
Query: 102 VEPKD------------------ALLQAINSEFVEAVELLLEY 126
+ + AL AI ++ V+LL+E
Sbjct: 70 KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 34.8 bits (79), Expect = 0.043
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQAINSEFVEAVEL 122
++N D GR L A + + L + G + +D L A+ + + V L
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
Query: 123 LLE 125
L
Sbjct: 320 LRL 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 34.0 bits (78), Expect = 0.063
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 21/79 (26%)
Query: 68 HIDINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD------------------- 106
+ V G++AL +AIE ELL+ G V +
Sbjct: 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142
Query: 107 ALLQAINSEFVEAVELLLE 125
L A + V L E
Sbjct: 143 PLSLAACTNQPHIVHYLTE 161
Score = 27.1 bits (60), Expect = 9.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 78 GRSALTLAIEGENLEMTELLIVMGVEPKDA 107
G S L +A + + + + +I + A
Sbjct: 225 GLSPLMMAAKTGKIGIFQHIIRREIADAAA 254
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 32.8 bits (75), Expect = 0.14
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 45 LLSVERGDTATVRKCIKRAYRNHHI------DINCVDPLGRSALTLAIEGENLEMTELLI 98
+L++ G T+ + A + + G++AL +AIE N+ + LL+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 99 VMG--VEPKD 106
G V+
Sbjct: 122 ENGADVQAAA 131
Score = 29.0 bits (65), Expect = 2.6
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 29/115 (25%)
Query: 40 EEKKY-----LLSVERGDTATVRKCIKRAYRN--HHIDINCVDP-LGRSALTLAIEGE-- 89
+ Y +V + + + + R+ D DP G++ L A+
Sbjct: 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67
Query: 90 -NLEMTELLIVMG-----------VEPKD-------ALLQAINSEFVEAVELLLE 125
+ LL+ + D AL AI + V LL+E
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 16/87 (18%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHI----------DINCVDPLGRSALTL 84
T L + L +T K + Y I + G + L L
Sbjct: 186 TVL------HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Query: 85 AIEGENLEMTELLIVMGVEPKDALLQA 111
A + + ++ + + A
Sbjct: 240 AASSGKIGVLAYILQREIHEPECRHAA 266
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 31.7 bits (73), Expect = 0.16
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKDALLQA 111
++ D GR + LA E + ++ L +
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARID 146
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 31.8 bits (72), Expect = 0.40
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 67 HHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQAINSEFVEA 119
+ ++ G +AL A + +LL+ + AL A E
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 120 VELL 123
ELL
Sbjct: 256 EELL 259
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 30.7 bits (69), Expect = 0.75
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 55 TVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG----VEPKDALLQ 110
+R + + L LA+ N LL+ + + +
Sbjct: 296 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYI 355
Query: 111 AINSEFVEAVELLLE 125
++ + LE
Sbjct: 356 NETGGRLDLRAVALE 370
Score = 28.4 bits (63), Expect = 4.5
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 9/69 (13%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEPK---------DALLQAINSEF 116
+ + A LA E +L + L + A A +
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175
Query: 117 VEAVELLLE 125
+ + L E
Sbjct: 176 LHVLNRLCE 184
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 28.7 bits (65), Expect = 0.98
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMG--VEPKD-----ALLQAINSEFVEAVEL 122
D+ D G + L LA +LE+ +LL+ G V +D A +I++ + E+
Sbjct: 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Query: 123 L 123
L
Sbjct: 109 L 109
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 27.9 bits (63), Expect = 6.0
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 89 ENLEMTELLIV--MGVEPKDALLQAINSEFVEAVELLLEY-EEIVHKEGEPYLSRKPP 143
E LE ELLI +GVE + +L+ + + +A+E L E EI++ + + + +PP
Sbjct: 49 EELE--ELLIQADVGVETTEYILERLEEKDGDALESLKEIILEILNFDTKLNVPPEPP 104
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 27.7 bits (61), Expect = 7.5
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 49 ERGDTATVRKCIKRAYRNHHIDINCV---DPLGRSALTLAIEGENLEMTELLIVMGVEPK 105
GD + ++R + + D+ + D + L+ L+ T + I
Sbjct: 40 NWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQDY--- 96
Query: 106 DALLQAI-NSEFVEAVELLLEYEEIVHKEGEPYLS 139
D L I N E EYE +V+ + Y+
Sbjct: 97 DLL--TIGNHELYLWENSKQEYETVVNHFQDKYVC 129
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase;
2.50A {Escherichia coli} SCOP: c.55.3.6
Length = 158
Score = 26.7 bits (60), Expect = 9.2
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 265 NAFDPQLIA-EGLFAGANVFSALKL 288
F P A E +F N SALKL
Sbjct: 56 TQFQPDYFAIEQVFMAKNADSALKL 80
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein
structure initiative, midwest center for structural
genomics, kinase; 2.30A {Pseudomonas syringae PV}
Length = 228
Score = 26.9 bits (60), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 270 QLIAEGLFAGANVFSALKLVHLFSINP 296
Q I E L AG +V++ + + HL S+N
Sbjct: 108 QDIQELLAAGIDVYTTVNVQHLESLND 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,979,044
Number of extensions: 362585
Number of successful extensions: 1016
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 197
Length of query: 377
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 282
Effective length of database: 4,049,298
Effective search space: 1141902036
Effective search space used: 1141902036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (25.8 bits)