RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7030
(377 letters)
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId:
9606]}
Length = 408
Score = 44.2 bits (103), Expect = 2e-05
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 19/104 (18%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMT 94
TPL ++ G V+ ++ N + + L +A + E+
Sbjct: 2 TPL-------HVASFMGHLPIVKNLLQ-----RGASPNVSNVKVETPLHMAARAGHTEVA 49
Query: 95 ELLIVMGVEP-------KDALLQAINSEFVEAVELLLEYEEIVH 131
+ L+ + + L A V+LLLE +
Sbjct: 50 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 93
Score = 34.6 bits (78), Expect = 0.019
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELL 97
+ ++G T V +K + N V G + L +A + +T++L
Sbjct: 336 QAAQQGHTDIVTLLLK-----NGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human
(Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 41.5 bits (96), Expect = 9e-05
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 58 KCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMG---VEPKD-----ALL 109
+ I +H D+N G++ L LA+E ++L + + L+ + D ALL
Sbjct: 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258
Query: 110 QAINSEFVEAVELLLEY 126
A+ + + ELL +
Sbjct: 259 LAVELKLKKIAELLCKR 275
Score = 38.8 bits (89), Expect = 6e-04
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
L+VE+ V++ +++ HI+IN D G++AL LA+E + ++ ELL G
Sbjct: 225 LAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279
Score = 26.9 bits (58), Expect = 4.0
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 65 RNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
R D + G +AL A E ++E+ ++L+
Sbjct: 135 RKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor
I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId:
10090]}
Length = 255
Score = 37.4 bits (85), Expect = 0.002
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 48 VERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGV-EPKD 106
VE + + +K D GR+ L A+ N + LL G EP+D
Sbjct: 200 VEAQAASVLELLLK-----AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 9/132 (6%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENL-------EMTELLI 98
L+V + + + H ++ + LG++AL LA ++
Sbjct: 15 LAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72
Query: 99 VMGVEPKDALLQAINSEFVEAVELLLEYEEIVHKEGEPYLSRKPPKSCQNTAYRILLLLV 158
V AL A +LL+ ++ + +T++ +
Sbjct: 73 VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDS 132
Query: 159 SQRADVILLEYL 170
+
Sbjct: 133 QPNPENEEEPRD 144
Score = 28.9 bits (63), Expect = 0.94
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 74 VDPLGRSALTLAIEGENLEMTELLIVMGVEPKD 106
V G +AL LA+ ++ + L+ +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY 37
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 58 KCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP-------KDALLQ 110
+ ++ GR+ L LA+E + + ELL+ G +P + L
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 111 AINSEFVEAVELLLEY 126
A+ LL +
Sbjct: 232 ALLRPNPILARLLRAH 247
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 153
Score = 35.6 bits (80), Expect = 0.004
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 58 KCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELL 97
+ + + D++ ++A ++I+ N ++ E+L
Sbjct: 113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans
[TaxId: 6239]}
Length = 277
Score = 35.9 bits (81), Expect = 0.005
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
L+ + G V I+ + VD +A LA + + ++
Sbjct: 227 LAAQEGRIEVVMYLIQ-----QGASVEAVDATDHTARQLAQANNHHNIVDIFD 274
Score = 29.3 bits (64), Expect = 0.66
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 46 LSVERGDTATVRKCIKRAYRNHHIDINCVDPL-GRSALTLAIEGENLEMTELLIVMGVE 103
L E + + + I R +N +DP R+ L + E +E LIV +
Sbjct: 6 LHTEAAGSYAITEPITRE------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 35.0 bits (79), Expect = 0.011
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 60 IKRAYRNHHIDINC-VDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
+ A+ N +++N VD G + L NLE+ + L+ G
Sbjct: 88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR 133
Score = 34.3 bits (77), Expect = 0.021
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 70 DINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP 104
+N D G + L +A N+ + + L+ G +P
Sbjct: 251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 10/79 (12%)
Query: 58 KCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELL-----IVMGVEPKD-----A 107
+ + + I S + E L I + +D
Sbjct: 203 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 262
Query: 108 LLQAINSEFVEAVELLLEY 126
L A + V+ LL+Y
Sbjct: 263 LNIAARLGNISIVDALLDY 281
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo
sapiens) [TaxId: 9606]}
Length = 156
Score = 34.0 bits (76), Expect = 0.013
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 59 CIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
++ D++ D G + L LA++ ++ ++L
Sbjct: 114 TAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 33.9 bits (76), Expect = 0.026
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 57 RKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP--KDAL----LQ 110
+ + D+N D G + L A E +L+ + + +
Sbjct: 211 YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270
Query: 111 AINSEFVEAVELLLEYEEIVH 131
+ + + +E L + + ++H
Sbjct: 271 VADEDILGYLEELQKKQNLLH 291
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416
{Legionella pneumophila [TaxId: 446]}
Length = 346
Score = 33.7 bits (76), Expect = 0.028
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 9/70 (12%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGVEP---------KDALLQAINSEF 116
+ + A LA E +L + L + A A +
Sbjct: 114 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 173
Query: 117 VEAVELLLEY 126
+ + L E
Sbjct: 174 LHVLNRLCEL 183
Score = 31.0 bits (69), Expect = 0.20
Identities = 7/50 (14%), Positives = 13/50 (26%)
Query: 49 ERGDTATVRKCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+ +R + + L LA+ N LL+
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337
Score = 31.0 bits (69), Expect = 0.20
Identities = 11/113 (9%), Positives = 26/113 (23%), Gaps = 18/113 (15%)
Query: 35 TPLTLEEKKYLLSVERGDTATVRKCIKRAYRNHHIDINCVDP-----LGRSALTLAIEGE 89
++ + K + + D+ L +
Sbjct: 232 EYGEKYVNPFIARHVNRL-KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 290
Query: 90 NLEMTELLIVMGV------------EPKDALLQAINSEFVEAVELLLEYEEIV 130
L+ L+ + + + L A+ A LLL ++
Sbjct: 291 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 343
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 209
Score = 32.8 bits (73), Expect = 0.043
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELL 97
++ + D + R +A E + ++ LL
Sbjct: 177 DNFANREITDHMDRLPRDVASERLHHDIVRLL 208
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 229
Score = 29.8 bits (65), Expect = 0.45
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 58 KCIKRAYRNHHIDINCVDPLGRSALTLAIEGENLEMTELLIVMGV 102
+ + + VD G A +A+ N ++ + + V
Sbjct: 186 DAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 27.6 bits (60), Expect = 2.3
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 66 NHHIDINCVDPLGRSALTLAIEGENLEMTELLI 98
+ I + ++ L +A G + + ++
Sbjct: 190 SQGASIYIENKEEKTPLQVAKGG-LGLILKRMV 221
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
(RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (57), Expect = 2.8
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 16/82 (19%)
Query: 2 IVKAQFNFWFQVGVEIEGP--GIVHTQPFDMPNLPTPLTLEEKKYLLSVERGDTATVRKC 59
+ + + V++ G + F+ T + + + GD +
Sbjct: 14 VTAKSGDIFK---VDVGGSEPASLSYLSFE------GATKRNRPNV---QVGDLIYGQ-- 59
Query: 60 IKRAYRNHHIDINCVDPLGRSA 81
A ++ ++ C+D GR+
Sbjct: 60 FVVANKDMEPEMVCIDSCGRAN 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,459,044
Number of extensions: 67857
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 31
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)