BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7032
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MX3|A Chain A, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
pdb|3MX3|B Chain B, Crystal Structure Of A Susd Homolog (Bf0972) From
Bacteroides Fragilis Nctc 9343 At 2.00 A Resolution
Length = 490
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 56 DSIKRKQQARQEKERDFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKG 108
D + KQ A E D++Y R+ Y L + Q V++D+VN G
Sbjct: 45 DELLAKQXAWGESXEDYQYNVFGRSGFGGYTTLINAQKXVESVSDDNVNAYDG 97
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 18 WLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQID 51
+L Y D P LPPP+ F + ++ FG++ +D
Sbjct: 118 YLKYKPDEPLLPPPWTGFIGDPV-VRRFGIKMVD 150
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 18 WLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQID 51
+L Y D P LPPP+ F + ++ FG++ +D
Sbjct: 118 YLKYKPDEPLLPPPWTGFIGDPV-VRRFGIKMVD 150
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 18 WLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQID 51
+L Y D P LPPP+ F + ++ FG++ +D
Sbjct: 117 YLKYKPDEPLLPPPWTGFIGDPV-VRRFGIKMVD 149
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 6 QIDKMRKDS------IKLWLSYFDDSPTLPPPFNIFPTTKMFLKMFG-LRQIDKMRK--D 56
++DK+++D+ + YF +SP PP FP F++ + Q ++ RK +
Sbjct: 328 KLDKLQRDAKTAEEAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQENEARKKQE 387
Query: 57 SIKRKQQARQEKER 70
+ R++Q QE ++
Sbjct: 388 EVMREKQLAQEAKK 401
>pdb|2QM2|A Chain A, Putative Hopj Type Iii Effector Protein From Vibrio
Parahaemolyticus
pdb|2QM2|B Chain B, Putative Hopj Type Iii Effector Protein From Vibrio
Parahaemolyticus
Length = 125
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 93 ADTNPVTEDDVNEVKGEITAMRYELMNVLEK 123
A TN T++D NE G + L+N L+K
Sbjct: 47 AFTNGNTQNDANENNGSCKIFAFGLLNALDK 77
>pdb|3OTB|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTB|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1) - Dgtp Complex
pdb|3OTC|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTC|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native Ii
pdb|3OTD|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTD|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Nai Derivative
pdb|3OTE|A Chain A, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
pdb|3OTE|B Chain B, Crystal Structure Of Human Trnahis Guanylyltransferase
(Thg1)- Native I
Length = 269
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 18 WLSYFDDSPTL-PPPFN----IFPTTKMFLKMFGLRQID 51
W YF+D P L PP F+ ++P+ + RQ D
Sbjct: 112 WRDYFEDQPLLYPPGFDGRVVVYPSNQTLKDYLSWRQAD 150
>pdb|3Q9D|A Chain A, Crystal Structure Of Cpn0803 From C. Pneumoniae.
pdb|3Q9D|B Chain B, Crystal Structure Of Cpn0803 From C. Pneumoniae
Length = 220
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 82 VWRYICLQHRQADTNPVTEDDVNEVKGEITAMR 114
+ R++ + +A NPV E ++ E++ EIT+++
Sbjct: 177 LIRHLLARLLEAQKNPVGEKNLQEIQEEITSLK 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,904,709
Number of Sequences: 62578
Number of extensions: 138151
Number of successful extensions: 361
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 11
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)