Query psy7032
Match_columns 136
No_of_seqs 116 out of 200
Neff 4.9
Searched_HMMs 29240
Date Sat Aug 17 01:02:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 66.4 6.2 0.00021 22.2 3.0 17 101-117 2-18 (33)
2 3knd_B Targeting protein for X 63.5 2.2 7.4E-05 29.1 0.8 11 25-35 2-12 (81)
3 1yzm_A FYVE-finger-containing 63.2 3.8 0.00013 25.6 1.9 36 79-114 11-48 (51)
4 3q9d_A Protein CPN_0803/CP_106 61.1 4.4 0.00015 31.2 2.3 40 76-120 176-215 (220)
5 1use_A VAsp, vasodilator-stimu 60.1 12 0.00041 22.8 3.7 20 103-122 17-36 (45)
6 1nh2_B Transcription initiatio 59.6 9.2 0.00031 23.8 3.2 32 73-108 8-39 (53)
7 2c0s_A Conserved domain protei 59.0 8.7 0.0003 24.7 3.1 28 103-130 3-30 (64)
8 1nvp_B Transcription initiatio 58.7 8.7 0.0003 24.3 3.0 32 73-108 12-43 (57)
9 3ra3_B P2F; coiled coil domain 56.3 9.5 0.00032 20.7 2.5 15 105-119 11-25 (28)
10 3v86_A De novo design helix; c 51.6 19 0.00066 19.3 3.2 20 101-120 7-26 (27)
11 3v1a_A Computational design, M 51.3 4.7 0.00016 24.9 0.8 32 80-111 11-44 (48)
12 3bbz_A P protein, phosphoprote 51.2 11 0.00036 23.4 2.4 16 96-111 30-45 (49)
13 1z0k_B FYVE-finger-containing 50.9 7.2 0.00025 25.8 1.7 35 79-113 29-65 (69)
14 1z0j_B FYVE-finger-containing 50.5 5.8 0.0002 25.5 1.2 35 79-113 18-54 (59)
15 2bzb_A Conserved domain protei 49.5 6.9 0.00024 25.0 1.4 28 103-130 3-30 (62)
16 3r4h_A Coiled coil helix CC-TE 49.1 18 0.00062 20.4 3.0 20 102-121 10-29 (34)
17 1dqe_A PBP, pheromone-binding 43.6 18 0.0006 25.5 3.0 51 75-125 2-60 (137)
18 3nrk_A LIC12922; NC domain, pa 42.9 78 0.0027 25.0 7.0 55 73-127 53-113 (325)
19 2kkm_A Translation machinery-a 38.5 36 0.0012 24.8 4.0 13 76-88 48-60 (144)
20 1bb1_B Designed, thermostable 35.8 30 0.001 19.7 2.5 19 100-118 15-33 (36)
21 3k4t_A Virion-associated prote 34.6 41 0.0014 23.4 3.6 30 100-129 8-37 (95)
22 2w6b_A RHO guanine nucleotide 29.8 58 0.002 20.6 3.4 20 101-120 17-36 (56)
23 1m5y_A SurviVal protein, survi 28.5 2.2E+02 0.0075 22.5 7.7 31 74-104 47-77 (408)
24 1g03_A HTLV-I capsid protein; 27.9 26 0.0009 25.5 1.7 12 101-112 18-29 (134)
25 3ra3_A P1C; coiled coil domain 26.8 48 0.0016 17.9 2.2 15 100-114 13-27 (28)
26 1ng6_A Hypothetical protein YQ 26.4 1.8E+02 0.0061 20.8 6.5 50 75-125 23-72 (148)
27 3bhp_A UPF0291 protein YNZC; N 26.0 1.3E+02 0.0045 19.1 4.8 40 80-124 5-44 (60)
28 3trt_A Vimentin; cytoskeleton, 26.0 45 0.0015 21.1 2.5 22 99-120 54-75 (77)
29 3tnu_B Keratin, type II cytosk 24.8 73 0.0025 22.3 3.6 26 98-123 33-58 (129)
30 2klq_A CBD, P105MCM, DNA repli 24.6 95 0.0032 21.6 4.1 31 72-103 11-41 (114)
31 2i9i_A Hypothetical protein; P 23.9 45 0.0015 27.0 2.6 41 72-135 207-247 (254)
32 3rgc_A Possible periplasmic pr 22.7 1.5E+02 0.0052 22.1 5.3 31 75-105 29-59 (252)
33 2riq_A Poly [ADP-ribose] polym 20.9 91 0.0031 23.3 3.6 29 101-129 29-59 (160)
34 1z2t_A Anchor peptide Ser65-Le 20.9 35 0.0012 18.1 0.9 12 80-91 9-20 (26)
35 2l2l_B Methyl-CPG-binding doma 20.5 1.3E+02 0.0046 17.3 3.9 28 96-123 5-32 (36)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.36 E-value=6.2 Score=22.21 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=8.9
Q ss_pred hHHHHHHhhHHHHHHHH
Q psy7032 101 DDVNEVKGEITAMRYEL 117 (136)
Q Consensus 101 ~dl~EiKQDISslRyEl 117 (136)
+++..+||+|..|+.|+
T Consensus 2 geiaalkqeiaalkkei 18 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEI 18 (33)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34555555555555554
No 2
>3knd_B Targeting protein for XKLP2; mitosis, importin, transport, protein transport; 2.15A {Xenopus laevis}
Probab=63.47 E-value=2.2 Score=29.14 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=9.9
Q ss_pred CCCCCCCcccc
Q psy7032 25 SPTLPPPFNIF 35 (136)
Q Consensus 25 ~~tlPpPFNli 35 (136)
|.|+|-||||=
T Consensus 2 g~T~pkPFnls 12 (81)
T 3knd_B 2 GHTVPKPFNLS 12 (81)
T ss_pred CCccccccccC
Confidence 78999999985
No 3
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=63.19 E-value=3.8 Score=25.61 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhcCCCC--ChhHHHHHHhhHHHHH
Q psy7032 79 RALVWRYICLQHRQADTNPV--TEDDVNEVKGEITAMR 114 (136)
Q Consensus 79 r~LVkRYi~~~qr~~e~~~v--tE~dl~EiKQDISslR 114 (136)
..+|+-||..+.....-|+| =+..|+||.+.|..+.
T Consensus 11 ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 11 IHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999987776553333 4677777777776654
No 4
>3q9d_A Protein CPN_0803/CP_1068/CPJ0803/CPB0832; coiled-coil, needle TIP TYPEIII secretion system, unknown FU; 2.00A {Chlamydophila pneumoniae}
Probab=61.08 E-value=4.4 Score=31.18 Aligned_cols=40 Identities=30% Similarity=0.526 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHHHH
Q psy7032 76 AVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMNV 120 (136)
Q Consensus 76 ~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~e~ 120 (136)
-++|-|..|.+.+. ..+|.|.++.||..||.|||...-+.
T Consensus 176 hlirhllarlleaq-----knpvgeknl~eiqedi~slk~hfeel 215 (220)
T 3q9d_A 176 HLIRHLLARLLEAQ-----KNPVGEKNLQEIQEEITSLKNHFDEL 215 (220)
T ss_dssp HHHHHHHHHHHHHH-----HSHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----cCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 36777777776553 35678999999999999999865443
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=60.10 E-value=12 Score=22.81 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=11.8
Q ss_pred HHHHHhhHHHHHHHHHHHHH
Q psy7032 103 VNEVKGEITAMRYELMNVLE 122 (136)
Q Consensus 103 l~EiKQDISslRyEl~e~l~ 122 (136)
|.|+++.|+.++.|+++.++
T Consensus 17 L~E~RkElqK~K~EIIeAi~ 36 (45)
T 1use_A 17 LEEVKKELQKVKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666677665
No 6
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=59.61 E-value=9.2 Score=23.78 Aligned_cols=32 Identities=9% Similarity=0.305 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHh
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKG 108 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQ 108 (136)
-|+.||... |...+.+.+++||.|.=|+||||
T Consensus 8 vY~~VI~dV----I~~vr~~F~~~Gvde~vL~eLk~ 39 (53)
T 1nh2_B 8 VYEIIVESV----VNEVREDFENAGIDEQTLQDLKN 39 (53)
T ss_dssp HHHHHHHHH----HHHTHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 466666554 55556678889999998888887
No 7
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=58.99 E-value=8.7 Score=24.73 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=16.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCc
Q psy7032 103 VNEVKGEITAMRYELMNVLEKNGMDTSS 130 (136)
Q Consensus 103 l~EiKQDISslRyEl~e~l~~~gm~~~~ 130 (136)
+..|.++|...|-||.+...+.|+.-|.
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~ 30 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKYGFTHHK 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3455666666666666666666655443
No 8
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=58.68 E-value=8.7 Score=24.26 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHh
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKG 108 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQ 108 (136)
-|+.||... |...+.+.+++||.|.=|+||||
T Consensus 12 vY~~VIedV----I~~vr~~F~~~Gvde~vL~eLk~ 43 (57)
T 1nvp_B 12 LYRSVIEDV----INDVRDIFLDDGVDEQVLMELKT 43 (57)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 567777555 55666678888999998888877
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=56.31 E-value=9.5 Score=20.72 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=12.9
Q ss_pred HHHhhHHHHHHHHHH
Q psy7032 105 EVKGEITAMRYELMN 119 (136)
Q Consensus 105 EiKQDISslRyEl~e 119 (136)
.+||+|..|-||+..
T Consensus 11 rlkqeiaaleyeiaa 25 (28)
T 3ra3_B 11 RLKQEIAALEYEIAA 25 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999999854
No 10
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=51.61 E-value=19 Score=19.33 Aligned_cols=20 Identities=40% Similarity=0.767 Sum_probs=17.2
Q ss_pred hHHHHHHhhHHHHHHHHHHH
Q psy7032 101 DDVNEVKGEITAMRYELMNV 120 (136)
Q Consensus 101 ~dl~EiKQDISslRyEl~e~ 120 (136)
|++-|+|.++-+|+-|+-+.
T Consensus 7 devgelkgevralkdevkdl 26 (27)
T 3v86_A 7 DEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcc
Confidence 78899999999999998664
No 11
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=51.32 E-value=4.7 Score=24.92 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhcCCCC--ChhHHHHHHhhHH
Q psy7032 80 ALVWRYICLQHRQADTNPV--TEDDVNEVKGEIT 111 (136)
Q Consensus 80 ~LVkRYi~~~qr~~e~~~v--tE~dl~EiKQDIS 111 (136)
.+|+-||.++.....-++| =+.+|+||.+.|.
T Consensus 11 ~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 11 KNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 5788899887766553333 3566666666654
No 12
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=51.20 E-value=11 Score=23.44 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=13.0
Q ss_pred CCCChhHHHHHHhhHH
Q psy7032 96 NPVTEDDVNEVKGEIT 111 (136)
Q Consensus 96 ~~vtE~dl~EiKQDIS 111 (136)
.--||+|++.||.||-
T Consensus 30 ~~~tE~q~k~iKr~II 45 (49)
T 3bbz_A 30 KASTEDALNDIKRDII 45 (49)
T ss_dssp TCCSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHH
Confidence 3447999999999984
No 13
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=50.89 E-value=7.2 Score=25.76 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhcCCCC--ChhHHHHHHhhHHHH
Q psy7032 79 RALVWRYICLQHRQADTNPV--TEDDVNEVKGEITAM 113 (136)
Q Consensus 79 r~LVkRYi~~~qr~~e~~~v--tE~dl~EiKQDISsl 113 (136)
..+|+-||.++..+..-|+| =|..|+||.+.|..+
T Consensus 29 ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 29 IHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 36888999987776553333 467777777776554
No 14
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=50.50 E-value=5.8 Score=25.51 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC--ChhHHHHHHhhHHHH
Q psy7032 79 RALVWRYICLQHRQADTNPV--TEDDVNEVKGEITAM 113 (136)
Q Consensus 79 r~LVkRYi~~~qr~~e~~~v--tE~dl~EiKQDISsl 113 (136)
..+|+-||..+.....-|+| =+..|+||.+.|..+
T Consensus 18 i~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 18 IDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 36889999988776553333 467777777776554
No 15
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=49.52 E-value=6.9 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=21.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcCCCCCc
Q psy7032 103 VNEVKGEITAMRYELMNVLEKNGMDTSS 130 (136)
Q Consensus 103 l~EiKQDISslRyEl~e~l~~~gm~~~~ 130 (136)
+..|.++|...|.||.+...+.|+.-|.
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~Gl~~~~ 30 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHGLDHDK 30 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 4677888888888888888877776544
No 16
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=49.10 E-value=18 Score=20.38 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=10.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q psy7032 102 DVNEVKGEITAMRYELMNVL 121 (136)
Q Consensus 102 dl~EiKQDISslRyEl~e~l 121 (136)
++..||.++...+|||..+.
T Consensus 10 elaaikkelaaikfelaaik 29 (34)
T 3r4h_A 10 ELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 17
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=43.63 E-value=18 Score=25.51 Aligned_cols=51 Identities=12% Similarity=0.056 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHh----hH----HHHHHHHHHHHHhcC
Q psy7032 75 AAVMRALVWRYICLQHRQADTNPVTEDDVNEVKG----EI----TAMRYELMNVLEKNG 125 (136)
Q Consensus 75 ~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQ----DI----SslRyEl~e~l~~~g 125 (136)
++||+.+-..+......=.++.|||++++.+++. ++ -.+++=+.=++++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~C~~E~gvs~e~i~~~~~~~~~~~~~~d~~~kC~~~C~~~K~g 60 (137)
T 1dqe_A 2 QEVMKNLSLNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKNRETGCAIMCLSTKLN 60 (137)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTTCCTHHHHHHHTTTSTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccCCCCCcccCcHHHHHHHHcC
Confidence 5788888888776655556688999999999988 63 356666666666666
No 18
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=42.87 E-value=78 Score=24.99 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhh-HHHHH----HHHHHHHHh-cCCC
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGE-ITAMR----YELMNVLEK-NGMD 127 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQD-ISslR----yEl~e~l~~-~gm~ 127 (136)
-.+.|+..||.+.+....-+...-.|++++|.+.=++ |..+. -++...|.. +||+
T Consensus 53 ~~~~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~~~~~~~~~~~~~~L~~~~g~t 113 (325)
T 3nrk_A 53 FRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMP 113 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCC
Confidence 3678999999999988666666667788777654333 54432 355677777 7775
No 19
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=38.54 E-value=36 Score=24.82 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q psy7032 76 AVMRALVWRYICL 88 (136)
Q Consensus 76 ~VMr~LVkRYi~~ 88 (136)
.-|+.||.+||..
T Consensus 48 ~e~~~lI~~yl~R 60 (144)
T 2kkm_A 48 AHTREFIQSFIER 60 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4578888888865
No 20
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=35.79 E-value=30 Score=19.69 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=16.6
Q ss_pred hhHHHHHHhhHHHHHHHHH
Q psy7032 100 EDDVNEVKGEITAMRYELM 118 (136)
Q Consensus 100 E~dl~EiKQDISslRyEl~ 118 (136)
|++++.||.+|...+|-+.
T Consensus 15 eeeiqaikeeiaaikylia 33 (36)
T 1bb1_B 15 EEEIQAIKEEIAAIKYLIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999654
No 21
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=34.61 E-value=41 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=26.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhcCCCCC
Q psy7032 100 EDDVNEVKGEITAMRYELMNVLEKNGMDTS 129 (136)
Q Consensus 100 E~dl~EiKQDISslRyEl~e~l~~~gm~~~ 129 (136)
..+|.|+.+|+.++..++-.+|..+|---|
T Consensus 8 ~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p 37 (95)
T 3k4t_A 8 QKEVSEILSDQKSMKADIKAILELLGSQNP 37 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 368999999999999999999999886554
No 22
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.77 E-value=58 Score=20.56 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=15.8
Q ss_pred hHHHHHHhhHHHHHHHHHHH
Q psy7032 101 DDVNEVKGEITAMRYELMNV 120 (136)
Q Consensus 101 ~dl~EiKQDISslRyEl~e~ 120 (136)
|+++||+||...|..-|=+.
T Consensus 17 DqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999887755443
No 23
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=28.51 E-value=2.2e+02 Score=22.53 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhHHH
Q psy7032 74 YAAVMRALVWRYICLQHRQADTNPVTEDDVN 104 (136)
Q Consensus 74 y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~ 104 (136)
.+.|+..||.+.+....-+...-.|++++|.
T Consensus 47 ~~~vl~~LI~~~ll~q~A~~~gi~vs~~ev~ 77 (408)
T 1m5y_A 47 RHQIMERLIMDQIILQMGQKMGVKISDEQLD 77 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 4668888888888765555555556666654
No 24
>1g03_A HTLV-I capsid protein; beta hairpin loop, helix core, viral protein; NMR {Human t-lymphotropic virus 1} SCOP: a.73.1.1
Probab=27.93 E-value=26 Score=25.50 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=10.7
Q ss_pred hHHHHHHhhHHH
Q psy7032 101 DDVNEVKGEITA 112 (136)
Q Consensus 101 ~dl~EiKQDISs 112 (136)
-||..|||+||+
T Consensus 18 kdLQ~IKqei~~ 29 (134)
T 1g03_A 18 KDLQAIKQEVSQ 29 (134)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 689999999986
No 25
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.81 E-value=48 Score=17.87 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=10.5
Q ss_pred hhHHHHHHhhHHHHH
Q psy7032 100 EDDVNEVKGEITAMR 114 (136)
Q Consensus 100 E~dl~EiKQDISslR 114 (136)
|..+..+||-|.||+
T Consensus 13 eqkiaalkqkiaslk 27 (28)
T 3ra3_A 13 EQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 455667788888775
No 26
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=26.35 E-value=1.8e+02 Score=20.79 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHHHHHHhcC
Q psy7032 75 AAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMNVLEKNG 125 (136)
Q Consensus 75 ~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~e~l~~~g 125 (136)
-.++|. |...|.....+..+.++|++++-+|=+=+..-|.|+++.+...|
T Consensus 23 ~~~lR~-l~aai~~~e~~~~~~~lt~~~l~~li~~~~K~~ke~~~~~~~~g 72 (148)
T 1ng6_A 23 LTVVRM-VKASLQNEAIKLKKDSLTEDEELTVLSRELKQRKDSLQEFSNAN 72 (148)
T ss_dssp HHHHHH-HHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344443 33344443333334679999999998888899999998887655
No 27
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=26.02 E-value=1.3e+02 Score=19.08 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHHHHHHhc
Q psy7032 80 ALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMNVLEKN 124 (136)
Q Consensus 80 ~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~e~l~~~ 124 (136)
.++.|.-.-+ +++.+.|+|++|.. +=..||.|-++.++.+
T Consensus 5 ~~i~RINeLa-kK~K~~gLT~eEk~----EQ~~LR~eYl~~fR~~ 44 (60)
T 3bhp_A 5 AKIARINELA-AKAKAGVITEEEKA----EQQKLRQEYLKGFRSS 44 (60)
T ss_dssp HHHHHHHHHH-HHHHHTCCCHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhccCCCHHHHH----HHHHHHHHHHHHHHHH
Confidence 3455543333 33445899998844 4455777777666643
No 28
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.96 E-value=45 Score=21.11 Aligned_cols=22 Identities=9% Similarity=0.324 Sum_probs=18.1
Q ss_pred ChhHHHHHHhhHHHHHHHHHHH
Q psy7032 99 TEDDVNEVKGEITAMRYELMNV 120 (136)
Q Consensus 99 tE~dl~EiKQDISslRyEl~e~ 120 (136)
+..+|.|++..|.+|..||-.+
T Consensus 54 ~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999997654
No 29
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.80 E-value=73 Score=22.28 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=20.6
Q ss_pred CChhHHHHHHhhHHHHHHHHHHHHHh
Q psy7032 98 VTEDDVNEVKGEITAMRYELMNVLEK 123 (136)
Q Consensus 98 vtE~dl~EiKQDISslRyEl~e~l~~ 123 (136)
-+..+|.|++..|++|+.||-.....
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36788999999999999998766543
No 30
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=24.63 E-value=95 Score=21.56 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCChhHH
Q psy7032 72 FRYAAVMRALVWRYICLQHRQADTNPVTEDDV 103 (136)
Q Consensus 72 ~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl 103 (136)
..|..+++.||.+=-.. ....+..|++.+||
T Consensus 11 d~Y~~i~n~lV~~ir~~-E~~~~~~G~~~~eL 41 (114)
T 2klq_A 11 SEYSRISNLIVLHLRKV-EEEEDESALKRSEL 41 (114)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHTSSSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hhhcccCCCCHHHH
Confidence 57899998888664332 22224578888776
No 31
>2i9i_A Hypothetical protein; PSI-2 structural genomics, protein structure initiative, NEW research center for structural genomics, nysgxrc; 1.80A {Helicobacter pylori} SCOP: c.51.6.1
Probab=23.88 E-value=45 Score=26.97 Aligned_cols=41 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHHHHHHhcCCCCCcccccc
Q psy7032 72 FRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMNVLEKNGMDTSSADKKE 135 (136)
Q Consensus 72 ~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~e~l~~~gm~~~~~~~~~ 135 (136)
.-|..||+.|++ .+|+.+++--+.||+.| + |..+|.-.++|
T Consensus 207 kiYa~vMkKi~k-------------eLt~~ni~sY~~~i~el--------K--g~k~~~~~~~~ 247 (254)
T 2i9i_A 207 RMYAVVMKKAVT-------------ELTKENIDKYREAIDRM--------K--GFKSSMPQKKE 247 (254)
T ss_dssp HHHHHHHHHHHH-------------HCCHHHHTTTHHHHHHH--------H--TCC--------
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH--------h--ccCCCCCcccc
Confidence 467788887775 35666555555555433 3 77777777765
No 32
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=22.71 E-value=1.5e+02 Score=22.09 Aligned_cols=31 Identities=6% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q psy7032 75 AAVMRALVWRYICLQHRQADTNPVTEDDVNE 105 (136)
Q Consensus 75 ~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~E 105 (136)
+.++..||.+-+....-+...-.|++++|.+
T Consensus 29 ~~vL~~LI~~~ll~q~A~~~gi~vsd~ev~~ 59 (252)
T 3rgc_A 29 NKALGVLINEKMEISQMKQLGIVVNDLELDD 59 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4677888887777655555555566655443
No 33
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=20.90 E-value=91 Score=23.26 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=23.0
Q ss_pred hHHHHHHhhHHH-HH-HHHHHHHHhcCCCCC
Q psy7032 101 DDVNEVKGEITA-MR-YELMNVLEKNGMDTS 129 (136)
Q Consensus 101 ~dl~EiKQDISs-lR-yEl~e~l~~~gm~~~ 129 (136)
+.+-+|++.|+. +- -+|.++|..|++.++
T Consensus 29 ~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~ 59 (160)
T 2riq_A 29 DLIWNIKDELKKVCSTNDLKELLIFNKQQVP 59 (160)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHcCCCCC
Confidence 667788888876 33 789999999998876
No 34
>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}
Probab=20.86 E-value=35 Score=18.12 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q psy7032 80 ALVWRYICLQHR 91 (136)
Q Consensus 80 ~LVkRYi~~~qr 91 (136)
..|+||+.++..
T Consensus 9 lfvkryvrkmrk 20 (26)
T 1z2t_A 9 LFVKRYVRKMRK 20 (26)
T ss_dssp HHHHHHTHHHHS
T ss_pred eeHHHHHHHHHh
Confidence 468999987654
No 35
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=20.55 E-value=1.3e+02 Score=17.26 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCCChhHHHHHHhhHHHHHHHHHHHHHh
Q psy7032 96 NPVTEDDVNEVKGEITAMRYELMNVLEK 123 (136)
Q Consensus 96 ~~vtE~dl~EiKQDISslRyEl~e~l~~ 123 (136)
..||++||..--.-+..-|--|-+.|..
T Consensus 5 ~~Vte~DIr~QE~rV~~aR~rL~eaL~a 32 (36)
T 2l2l_B 5 FIVTDEDIRKQEERVQQVRKKLEEALMA 32 (36)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4689999998888888899999888864
Done!