Query psy7032
Match_columns 136
No_of_seqs 116 out of 200
Neff 4.9
Searched_HMMs 13730
Date Sat Aug 17 01:02:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m5ya1 a.223.1.2 (A:25-164,A: 48.3 31 0.0023 22.5 6.8 56 73-128 42-101 (173)
2 d1nvpb_ a.32.1.1 (B:) Large ch 48.2 9.9 0.00072 21.5 3.4 33 73-109 5-37 (43)
3 d1f54a_ a.39.1.5 (A:) Calmodul 43.8 13 0.00094 21.6 3.7 37 96-132 2-47 (77)
4 d1nh2b_ a.32.1.1 (B:) Large ch 39.6 19 0.0014 20.4 3.7 33 73-109 7-39 (46)
5 d2pq3a1 a.39.1.5 (A:3-75) Calm 34.8 19 0.0014 20.7 3.4 34 98-131 2-44 (73)
6 d1avsa_ a.39.1.5 (A:) Troponin 33.9 24 0.0018 20.7 3.8 35 98-132 8-51 (81)
7 d1g03a_ a.73.1.1 (A:) HTLV-I c 30.9 10 0.00074 25.9 1.7 13 100-112 17-29 (134)
8 d1dd5a_ d.67.3.1 (A:) Ribosome 29.2 84 0.0061 21.7 6.9 49 71-119 120-168 (184)
9 d1yzma1 a.2.19.1 (A:456-501) F 28.0 11 0.00078 21.7 1.2 31 80-110 9-41 (46)
10 d1dlwa_ a.1.1.1 (A:) Protozoan 27.8 24 0.0017 22.0 3.1 40 71-118 75-114 (116)
11 d1sd4a_ a.4.5.39 (A:) Penicill 25.0 34 0.0025 21.9 3.6 43 71-113 72-119 (122)
12 d1is1a_ d.67.3.1 (A:) Ribosome 22.7 1.1E+02 0.0082 21.0 7.3 47 72-118 122-168 (185)
13 d1wqga1 d.67.3.1 (A:2-184) Rib 22.2 1.1E+02 0.0084 20.9 7.3 47 72-118 121-167 (183)
14 d1ngna_ a.96.1.2 (A:) Mismatch 22.0 58 0.0042 21.4 4.5 13 75-87 39-51 (144)
15 d1ez3a_ a.47.2.1 (A:) Syntaxin 20.4 40 0.0029 21.3 3.2 22 101-122 10-31 (124)
No 1
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=48.26 E-value=31 Score=22.53 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHH----HHHHHHHHHhcCCCC
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAM----RYELMNVLEKNGMDT 128 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISsl----RyEl~e~l~~~gm~~ 128 (136)
-...++..||.+-+....-+..+-.|++++|..-=++|..- ..++...|+.+||+.
T Consensus 42 l~~~vl~~LI~~~Ll~q~a~~~~i~vs~~ev~~~i~~~~~~~~~~~~~f~~~L~~~g~~~ 101 (173)
T d1m5ya1 42 LRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNY 101 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 45678899999988876555556667777766544444221 235667778888764
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.20 E-value=9.9 Score=21.46 Aligned_cols=33 Identities=21% Similarity=0.129 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhh
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGE 109 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQD 109 (136)
-|+.||... |.+.+.+.+++||.|.=|+|||+-
T Consensus 5 vY~~VIedV----I~~vR~~F~~~GvDe~vL~eLk~~ 37 (43)
T d1nvpb_ 5 LYRSVIEDV----INDVRDIFLDDGVDEQVLMELKTL 37 (43)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 356666554 455666788899999999999874
No 3
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.81 E-value=13 Score=21.63 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCCChhHHHHHHhhHHHH---------HHHHHHHHHhcCCCCCccc
Q psy7032 96 NPVTEDDVNEVKGEITAM---------RYELMNVLEKNGMDTSSAD 132 (136)
Q Consensus 96 ~~vtE~dl~EiKQDISsl---------RyEl~e~l~~~gm~~~~~~ 132 (136)
..+|++++.+|++=+..| +.||..+|+..|+..+..+
T Consensus 2 ~~lt~eqi~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~t~~e 47 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAE 47 (77)
T ss_dssp CCCCHHHHHHHHHHHHHTCTTCSSEEEHHHHHHHHHHHTCCCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCeEChHHHHHHHHHhCCCCCHHH
Confidence 356788888887655555 4588888888887766543
No 4
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.63 E-value=19 Score=20.43 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhh
Q psy7032 73 RYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGE 109 (136)
Q Consensus 73 ~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQD 109 (136)
-|+.||...+ ..-+.+.+++||.|.=|+|||+-
T Consensus 7 vY~~VI~dVI----~~vR~dF~~~Gvde~vL~eLk~~ 39 (46)
T d1nh2b_ 7 VYEIIVESVV----NEVREDFENAGIDEQTLQDLKNI 39 (46)
T ss_dssp HHHHHHHHHH----HHTHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHcCCcHHHHHHHHHH
Confidence 5777776654 44456788899999999999874
No 5
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=34.81 E-value=19 Score=20.69 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=20.0
Q ss_pred CChhHHHHHHhhHHHH---------HHHHHHHHHhcCCCCCcc
Q psy7032 98 VTEDDVNEVKGEITAM---------RYELMNVLEKNGMDTSSA 131 (136)
Q Consensus 98 vtE~dl~EiKQDISsl---------RyEl~e~l~~~gm~~~~~ 131 (136)
+|++++.|+++=...| ..||..+|+..|+..+..
T Consensus 2 Ls~eei~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~ 44 (73)
T d2pq3a1 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEA 44 (73)
T ss_dssp CCHHHHHHHHHHHHHTCTTSSSEEEGGGHHHHHHHTTCCCCHH
T ss_pred cCHHHHHHHHHHHHHHcCCCCceEeHHHHHHHHHHhCCCCCHH
Confidence 5667777766522222 126777777777776643
No 6
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.93 E-value=24 Score=20.73 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=19.9
Q ss_pred CChhHHHHHHhhHHHH---------HHHHHHHHHhcCCCCCccc
Q psy7032 98 VTEDDVNEVKGEITAM---------RYELMNVLEKNGMDTSSAD 132 (136)
Q Consensus 98 vtE~dl~EiKQDISsl---------RyEl~e~l~~~gm~~~~~~ 132 (136)
+|++++.|++.=+..| .-||..+|+..|.+.+..+
T Consensus 8 Lt~~~i~el~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~s~~e 51 (81)
T d1avsa_ 8 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEE 51 (81)
T ss_dssp BCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCeEchhHHHHHHHHcCCCCCHHH
Confidence 3555555555533333 3366677777777766543
No 7
>d1g03a_ a.73.1.1 (A:) HTLV-I capsid protein {Human T-cell leukemia virus type 1 [TaxId: 11908]}
Probab=30.91 E-value=10 Score=25.88 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=11.1
Q ss_pred hhHHHHHHhhHHH
Q psy7032 100 EDDVNEVKGEITA 112 (136)
Q Consensus 100 E~dl~EiKQDISs 112 (136)
--||..||||||+
T Consensus 17 mkdLQaIKqeis~ 29 (134)
T d1g03a_ 17 MKDLQAIKQEVSQ 29 (134)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3689999999986
No 8
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=29.17 E-value=84 Score=21.70 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHHH
Q psy7032 71 DFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMN 119 (136)
Q Consensus 71 ~~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~e 119 (136)
-..+..-+|+.=+-++...+....+.+++|||+.....+|..+=-+-.+
T Consensus 120 ~E~aKv~iR~iR~~~~~~lk~~~k~~~iseD~~k~~~~~iq~ltd~~~~ 168 (184)
T d1dd5a_ 120 VEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIE 168 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 3455566666444444444444457789999999999999887655443
No 9
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.04 E-value=11 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhcCCCC--ChhHHHHHHhhH
Q psy7032 80 ALVWRYICLQHRQADTNPV--TEDDVNEVKGEI 110 (136)
Q Consensus 80 ~LVkRYi~~~qr~~e~~~v--tE~dl~EiKQDI 110 (136)
..|+-||.+++.+..-|+| =|.+|+||+...
T Consensus 9 ~~ik~yI~QAk~a~R~dEV~~Le~NLreLq~e~ 41 (46)
T d1yzma1 9 HNITSFIRQAKAAGRMDEVRTLQENLRQLQDEY 41 (46)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3578899888776553333 356666665543
No 10
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=27.85 E-value=24 Score=21.98 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHH
Q psy7032 71 DFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELM 118 (136)
Q Consensus 71 ~~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~ 118 (136)
+..+..++..|.. .-++.++.++.+.|+..-+.++|.+++
T Consensus 75 ~~~fd~~~~~l~~--------al~e~~v~~~~~~e~~~~~~~lr~~Iv 114 (116)
T d1dlwa_ 75 NAQFTTVIGHLRS--------ALTGAGVAAALVEQTVAVAETVRGDVV 114 (116)
T ss_dssp HHHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHH--------HHHHcCCCHHHHHHHHHHHHHHHhcce
Confidence 4455555544433 333457899999999999999999875
No 11
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=24.98 E-value=34 Score=21.93 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHH----HHHh-hcCCCCChhHHHHHHhhHHHH
Q psy7032 71 DFRYAAVMRALVWRYICL----QHRQ-ADTNPVTEDDVNEVKGEITAM 113 (136)
Q Consensus 71 ~~~y~~VMr~LVkRYi~~----~qr~-~e~~~vtE~dl~EiKQDISsl 113 (136)
+......|+.++.++..- .-.. -+++.++.+|+.||++=|..+
T Consensus 72 ~~~~~~~~~~~~~~~~~gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~ 119 (122)
T d1sd4a_ 72 DDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDI 119 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 344556777777776532 1111 235789999999999877654
No 12
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=22.72 E-value=1.1e+02 Score=20.98 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHH
Q psy7032 72 FRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELM 118 (136)
Q Consensus 72 ~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~ 118 (136)
..+..-+|+.=+...........+.+++|||+..+..+|..+=-+-.
T Consensus 122 E~akv~iRniRr~~~~~ikk~~k~~~iseD~~k~~~~~iq~ltd~~~ 168 (185)
T d1is1a_ 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAV 168 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCHhHHHHHHHHHHHHHHHHH
Confidence 34445555544444444344344668999999999999988765443
No 13
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.24 E-value=1.1e+02 Score=20.90 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHhhHHHHHHHHH
Q psy7032 72 FRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELM 118 (136)
Q Consensus 72 ~~y~~VMr~LVkRYi~~~qr~~e~~~vtE~dl~EiKQDISslRyEl~ 118 (136)
..+..-+|++=+.+....+....+.+++|||+.....+|..+=-+-.
T Consensus 121 E~aKv~iRniR~~~~~~lk~~~k~~~iseD~~~~~~~~iq~ltd~~~ 167 (183)
T d1wqga1 121 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYV 167 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHH
Confidence 45555666666666665555556777999999999999988765443
No 14
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.99 E-value=58 Score=21.44 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q psy7032 75 AAVMRALVWRYIC 87 (136)
Q Consensus 75 ~~VMr~LVkRYi~ 87 (136)
..|+.+|+++|-+
T Consensus 39 ~~v~~~L~~~~pt 51 (144)
T d1ngna_ 39 IPVLWEFLEKYPS 51 (144)
T ss_dssp HHHHHHHHHHSCS
T ss_pred HHHHHHHHHhCCc
Confidence 4677788877753
No 15
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.36 E-value=40 Score=21.31 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=14.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHH
Q psy7032 101 DDVNEVKGEITAMRYELMNVLE 122 (136)
Q Consensus 101 ~dl~EiKQDISslRyEl~e~l~ 122 (136)
+++.+|+++|..++..+-.+-.
T Consensus 10 ~eV~~Ir~~I~~i~~~v~~i~~ 31 (124)
T d1ez3a_ 10 EQVEEIRGFIDKIAENVEEVKR 31 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766655443
Done!