RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7032
         (136 letters)



>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
           protein.  The Transient Receptor Potential Ca2+ Channel
           (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
           been called the store-operated calcium channel (SOC)
           family. The prototypical members include the Drosophila
           retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
           Hardie and Minke, 1993). SOC members of the family
           mediate the entry of extracellular Ca2+ into cells in
           responseto depletion of intracellular Ca2+ stores
           (Clapham, 1996) and agonist stimulated production of
           inositol-1,4,5 trisphosphate (IP3). One member of the
           TRP-CCfamily, mammalian Htrp3, has been shown to form a
           tight complex with the IP3 receptor (TC #1.A.3.2.1).
           This interaction is apparently required for IP3
           tostimulate Ca2+ release via Htrp3. The vanilloid
           receptor subtype 1 (VR1), which is the receptor for
           capsaicin (the ?hot? ingredient in chili peppers) and
           servesas a heat-activated ion channel in the pain
           pathway (Caterina et al., 1997), is also a member of
           this family. The stretch-inhibitable non-selective
           cation channel(SIC) is identical to the vanilloid
           receptor throughout all of its first 700 residues, but
           it exhibits a different sequence in its last 100
           residues. VR1 and SICtransport monovalent cations as
           well as Ca2+. VR1 is about 10x more permeable to Ca2+
           than to monovalent ions. Ca2+ overload probably causes
           cell deathafter chronic exposure to capsaicin.
           (McCleskey and Gold, 1999) [Transport and binding
           proteins, Cations and iron carrying compounds].
          Length = 743

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 16  KLWLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKD-SIKRKQQARQEK------ 68
           KLW+SY  +  T PPPFNI P  K F+ +F   +    +K     R+ +           
Sbjct: 632 KLWMSYEREGGTCPPPFNIIPGPKSFVGLFKRIEKHDGKKRQRWCRRVEEVNWTTWERKA 691

Query: 69  ----ERDFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYE 116
               E    Y  VM+ L+ RY+  + R  D    TE++  E+K +I+++R+E
Sbjct: 692 ETLIEDGLHYQRVMKRLIKRYVLAEQRPRDDEGTTEEETKELKQDISSLRFE 743


>gnl|CDD|221398 pfam12056, DUF3537, Protein of unknown function (DUF3537).  This
           family of transmembrane proteins are functionally
           uncharacterized. This protein is found in eukaryotes.
           Proteins in this family are typically between 427 to 453
           amino acids in length.
          Length = 398

 Score = 27.7 bits (62), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 41  FLKMFGLRQ---IDKMRKDSIKRKQQARQEKERDFRYAAV 77
           + + +GLR+   +DK+  DS + +     E +R FR  A 
Sbjct: 83  WFRKYGLRKFLFLDKLSDDSDRVRLGYTAEIKRSFRLLAY 122


>gnl|CDD|188285 TIGR03133, malonate_beta, malonate decarboxylase, beta subunit.
           Members of this protein family are the beta subunit of
           malonate decarboxylase. Malonate decarboxylase may be a
           soluble enzyme, or linked to membrane subunits and
           active as a sodium pump. In the malonate decarboxylase
           complex, the beta subunit appears to act as a
           malonyl-CoA decarboxylase.
          Length = 274

 Score = 27.6 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 79  RALVWRYICLQHRQA--DTNPVTEDDVNEVKGEITA 112
           RALVWR    +HR    D + + EDDV+  +  + A
Sbjct: 193 RALVWRTTGGKHRFLSGDADVLVEDDVDAFRAAVIA 228


>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956).  This
          family of proteins with unknown function appears to be
          restricted to Gammaproteobacteria.
          Length = 103

 Score = 26.5 bits (59), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 48 RQIDKMRKDSIKRKQQARQEKE 69
          R+ DK RK  +K KQ+     +
Sbjct: 48 READKARKQQLKAKQRQAANDD 69


>gnl|CDD|235954 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
          Length = 301

 Score = 27.2 bits (61), Expect = 2.7
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 79  RALVWRYICLQHRQA--DTNPVTEDDVNEVKGEITA 112
           RALVWR    +HR      + + +DDV   +    A
Sbjct: 202 RALVWRTTGGKHRYLSGLADALVDDDVAAFRAAALA 237


>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
          Length = 1320

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 57  SIKRKQQARQEKERDFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYE 116
           +I   Q  + E     R+A   +A+          +A  N V +DDVN ++  I  +R E
Sbjct: 410 AISPSQSCKSETFSTLRFAQRAKAI--------KNKAVVNEVMQDDVNFLREVIRQLRDE 461

Query: 117 LMNV 120
           L  V
Sbjct: 462 LQRV 465


>gnl|CDD|182816 PRK10894, PRK10894, lipopolysaccharide transport periplasmic
           protein LptA; Provisional.
          Length = 180

 Score = 26.3 bits (58), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)

Query: 96  NPVT----EDDVNEVKGEITAMRYELMN 119
           NP T    +D+   VKG  + M YEL  
Sbjct: 87  NPATFYQMQDNGKPVKGHASKMHYELAK 114


>gnl|CDD|182742 PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional.
          Length = 130

 Score = 25.5 bits (56), Expect = 8.4
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 13/80 (16%)

Query: 62  QQARQE--KERDFRYAAVMR---ALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYE 116
           ++AR E  +   F   A++    A V R + +++      P   DD+ EV+ EIT+MR  
Sbjct: 30  ERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYA----PARLDDMLEVQSEITSMRGT 85

Query: 117 LM----NVLEKNGMDTSSAD 132
            +     ++   G   + A+
Sbjct: 86  SLTFTQRIVNAEGTLLNEAE 105


>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase;
           Provisional.
          Length = 409

 Score = 25.9 bits (58), Expect = 9.3
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 3/23 (13%)

Query: 36  PTTKMFLKMFGLRQIDKMRKDSI 58
           P+TK    M G  ++  M+  +I
Sbjct: 215 PSTK---NMIGAEELALMKPGAI 234


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,006,476
Number of extensions: 616160
Number of successful extensions: 703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 29
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)