RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7032
         (136 letters)



>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
           assembly, protein binding; 2.55A {Homo sapiens} PDB:
           2z6e_A
          Length = 483

 Score = 27.9 bits (62), Expect = 0.98
 Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 6   QIDKMRKDSIKLWLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKDSIKRKQQAR 65
            + + +    K  + +F +      P   F     FL+        + ++++   +++  
Sbjct: 350 LLAEAKDLFTKA-VKHFGEEAGKIQPDEFFGIFDQFLQAV-----SEAKQENENMRKKKE 403

Query: 66  QEKER 70
           +E+ R
Sbjct: 404 EEERR 408


>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
           cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
           PDB: 3o4x_E 2bap_D
          Length = 457

 Score = 27.9 bits (62), Expect = 1.0
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 19  LSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKDSIKRKQQARQEKERDFRYAAVM 78
             YF   P        F     F  MF      +  K++ KR++   + +          
Sbjct: 350 GDYFVFDPKKLSVEEFFMDLHNFRNMF-----LQAVKENQKRRETEEKMRRAKLAKEKAE 404

Query: 79  RALVWRYICLQHRQADTNPVTEDDVNEVKGEITAMR 114
           +  + +    +  Q        D+   +   + A++
Sbjct: 405 KERLEK--QQKREQLIDMNAEGDETGVMDSLLEALQ 438


>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
           {Mus musculus} SCOP: a.207.1.1
          Length = 340

 Score = 27.8 bits (62), Expect = 1.2
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 6   QIDKMRKDSIKLWLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKDSIKRKQQAR 65
               M     +L   YF   P        F     F  MF      +  K++ KR++   
Sbjct: 267 MHSNMETLYKEL-GDYFVFDPKKLSVEEFFMDLHNFRNMF-----LQAVKENQKRRETEE 320

Query: 66  QEKER 70
           + +  
Sbjct: 321 KMRRA 325


>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle,
           cell division, chromosome partition, cytoplasm; 2.30A
           {Mycobacterium tuberculosis}
          Length = 219

 Score = 27.3 bits (61), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 34  IFPTTKMFLKMFGLRQID 51
            F TT++FL+  GL  + 
Sbjct: 154 TFATTELFLERLGLTSLS 171


>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
           {Nicotiana tabacum}
          Length = 453

 Score = 26.4 bits (58), Expect = 4.0
 Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 5/84 (5%)

Query: 5   RQIDKMRKDSIKLWLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKDSIKRKQQA 64
           R + K          +       +    ++          F    I +     +K     
Sbjct: 203 RSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTF---IITRHDIGKLKNLVLT 259

Query: 65  RQEKERDF-RYAAVMRALVWRYIC 87
           R+ K      +     A VW  I 
Sbjct: 260 RRPKLTHVTSFTVTC-AYVWTCII 282


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 23/76 (30%)

Query: 79   RALVWRYICLQHRQ-ADTNPVTE---DDVNEV---------KGE----------ITAMRY 115
            + +   Y  +      D    TE    ++NE          KG           +T M  
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741

Query: 116  ELMNVLEKNGMDTSSA 131
                 L+  G+  + A
Sbjct: 1742 AAFEDLKSKGLIPADA 1757


>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
           {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
          Length = 995

 Score = 25.4 bits (56), Expect = 7.7
 Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 5/57 (8%)

Query: 38  TKMFLKMFGLRQIDKMRKDSIKRKQ-----QARQEKERDFRYAAVMRALVWRYICLQ 89
           +K+F +   L Q+++ R     +           +   D + +   R        +Q
Sbjct: 738 SKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQ 794


>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix,
           structural genomics, BSGC structu by NIH, protein
           structure initiative, PSI; 1.95A {Chlorobium tepidum
           tls} SCOP: a.4.5.60 a.4.5.60
          Length = 162

 Score = 24.8 bits (55), Expect = 10.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 34  IFPTTKMFLKMFGL 47
            + TT++FL +F L
Sbjct: 149 QYGTTEVFLDLFHL 162


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,045,124
Number of extensions: 110815
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 21
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)