RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7032
         (136 letters)



>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 411

 Score = 28.1 bits (62), Expect = 0.31
 Identities = 8/64 (12%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 6   QIDKMRKDSIKLWLSYFDDSPTLPPPFNIFPTTKMFLKMFGLRQIDKMRKDSIKRKQQAR 65
           ++     +   L  +Y +DS       + F     F+  +      K +  ++  +++ R
Sbjct: 352 EVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEY-----KKAQAQNLAAEEEER 406

Query: 66  QEKE 69
              +
Sbjct: 407 LYIK 410


>d2aega1 d.303.1.1 (A:2-244) Hypothetical protein Atu5096
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 243

 Score = 25.6 bits (55), Expect = 1.9
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 12 KDSIKLWLSYFDDSPTLPPPFNIFPTTKM 40
          KD +  W    +    L P + + P    
Sbjct: 9  KDWVSKWAQDAESLINLMPAYQMNPDQMG 37


>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating
           enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
          Length = 196

 Score = 25.4 bits (55), Expect = 2.4
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 22  FDDSPTLPPPFNIFPTTK 39
            D+     P F  F ++ 
Sbjct: 130 SDEDGWSAPEFAAFVSSI 147


>d1tt8a_ d.190.1.1 (A:) Chorismate lyase {Escherichia coli [TaxId:
          562]}
          Length = 164

 Score = 24.9 bits (54), Expect = 3.5
 Identities = 5/14 (35%), Positives = 6/14 (42%)

Query: 18 WLSYFDDSPTLPPP 31
           L Y  + P L P 
Sbjct: 10 ALRYSKEIPALDPQ 23


>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 23.9 bits (52), Expect = 4.6
 Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 49  QIDKMRKDSIKRKQQARQEKERDFRYAAVMRALVWRYICLQHRQADTNPVTEDDVNEVKG 108
           +I KM +D+   +  A  +++ +       +     +   +  +   + +  DD   ++ 
Sbjct: 5   EIQKMVRDA---EANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 61

Query: 109 EITAMRYELMNVLEKNGMDTSSADKKE 135
            +T     L   L+        A  +E
Sbjct: 62  ALT----ALETALKGEDKAAIEAKMQE 84


>d1t6sa2 a.4.5.60 (A:86-162) Segregation and condensation protein
          B, ScpB {Chlorobium tepidum [TaxId: 1097]}
          Length = 77

 Score = 23.2 bits (50), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 22 FDDSPTLPPPFNIFPTTKMFLKMFGL 47
            DSP  P     + TT++FL +F L
Sbjct: 55 RADSPGRP---LQYGTTEVFLDLFHL 77


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 4   LRQIDKMRKDSIKLWLS---YFDDSPTLPPPFNIFPTTKMFLKMFG--LRQIDKMRK--D 56
             ++  M  +   L+     YF   P        F     F  MF   +++  K R+  +
Sbjct: 256 YNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEE 315

Query: 57  SIKRKQQARQEKERD 71
            ++R + A+++ E++
Sbjct: 316 KMRRAKLAKEKAEKE 330


>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 24.1 bits (52), Expect = 6.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 81  LVWRYICLQHRQADTNPVTEDDVNEVKGEITAMRYELMN 119
             ++   LQ+R+ +TN V + D  + +  +  M   L N
Sbjct: 35  YDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDN 73


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 23.6 bits (51), Expect = 9.3
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 13  DSIKLWLSYFDDSPTLPP 30
            S+   LS    +P +PP
Sbjct: 337 HSVLSILSLLLKAPVVPP 354


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,235
Number of extensions: 21196
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 14
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)