Query psy7033
Match_columns 107
No_of_seqs 101 out of 198
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 01:03:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3609|consensus 99.9 7.5E-29 1.6E-33 211.6 2.9 83 22-107 269-353 (822)
2 TIGR00870 trp transient-recept 99.4 5.6E-14 1.2E-18 119.4 -0.7 83 25-107 272-356 (743)
3 KOG3614|consensus 99.2 7.3E-12 1.6E-16 112.0 1.9 71 11-86 640-715 (1381)
4 PF13373 DUF2407_C: DUF2407 C- 59.0 40 0.00086 23.9 5.7 28 63-90 88-115 (140)
5 KOG4349|consensus 50.6 23 0.0005 25.1 3.3 37 63-101 50-86 (143)
6 PF11588 DUF3243: Protein of u 42.1 12 0.00026 24.4 0.7 38 1-54 26-63 (81)
7 TIGR02972 TMAO_torE trimethyla 31.2 1.2E+02 0.0025 17.9 3.7 17 69-85 13-29 (47)
8 PF06796 NapE: Periplasmic nit 29.8 1.3E+02 0.0027 18.3 3.8 15 70-84 22-36 (56)
9 PF11970 Git3_C: G protein-cou 29.0 82 0.0018 19.9 3.0 20 69-88 9-28 (76)
10 PF08352 oligo_HPY: Oligopepti 27.2 30 0.00066 20.3 0.8 12 39-50 14-25 (64)
11 TIGR02973 nitrate_rd_NapE peri 26.3 1E+02 0.0023 17.6 2.8 16 69-84 8-23 (42)
12 COG0163 UbiX 3-polyprenyl-4-hy 25.6 36 0.00079 25.6 1.0 21 2-22 90-110 (191)
13 COG4459 NapE Periplasmic nitra 25.5 1.5E+02 0.0032 18.3 3.6 28 55-84 12-39 (62)
14 PF04342 DUF486: Protein of un 25.1 1.8E+02 0.0038 20.0 4.2 45 44-94 11-56 (108)
15 cd01053 AOX Alternative oxidas 23.9 1.2E+02 0.0027 22.2 3.5 32 59-90 63-94 (168)
16 TIGR02113 coaC_strep phosphopa 23.6 60 0.0013 23.5 1.9 52 2-53 86-141 (177)
17 PF01786 AOX: Alternative oxid 22.2 1.1E+02 0.0025 23.0 3.2 31 60-90 104-134 (207)
No 1
>KOG3609|consensus
Probab=99.95 E-value=7.5e-29 Score=211.59 Aligned_cols=83 Identities=41% Similarity=0.680 Sum_probs=80.5
Q ss_pred cCCCCcccccccccc--ceeehhHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhccc
Q psy7033 22 CQSHKYQPLPTNFFQ--FVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRKP 99 (107)
Q Consensus 22 ~~~~~~L~lAi~~~q--FVAHp~~Q~~L~~~Wy~~l~~~~~~~~~~k~l~~~~~~~~~Pll~l~y~i~P~s~~g~~~r~P 99 (107)
..+++|||+||+|+| |||||||||+|+++||+ |||+++...|++.+..++++||+++++|+++|+|+.|+++|+|
T Consensus 269 ~~sl~RLklAIkyeqK~FVahpNcQq~L~siWy~---g~R~~~~~~K~~~~~~~~~~~P~~~l~yllap~S~~G~~~r~P 345 (822)
T KOG3609|consen 269 RISLPRLKLAIKYEQKEFVAHPNCQQLLKSVWYS---GWRRKGIKPKFDAWRFLRLCFPMPSLVYLLAPMSRKGTTMRKP 345 (822)
T ss_pred ccccHHHHHHHHHhhhheecCccHHHHHHHHHhh---hhhhcchHHHHHHHHHHHHHhHHHHHHHHhCCCCcccchhhch
Confidence 367899999999999 99999999999999999 8999999999999999999999999999999999999999999
Q ss_pred eeeccccC
Q psy7033 100 FVKFVVHA 107 (107)
Q Consensus 100 fvKF~~h~ 107 (107)
|+||++|+
T Consensus 346 fmKFi~H~ 353 (822)
T KOG3609|consen 346 FMKFIAHI 353 (822)
T ss_pred HHHHHHHH
Confidence 99999995
No 2
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.37 E-value=5.6e-14 Score=119.39 Aligned_cols=83 Identities=37% Similarity=0.572 Sum_probs=77.5
Q ss_pred CCcccccccccc--ceeehhHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhccceee
Q psy7033 25 HKYQPLPTNFFQ--FVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRKPFVK 102 (107)
Q Consensus 25 ~~~L~lAi~~~q--FVAHp~~Q~~L~~~Wy~~l~~~~~~~~~~k~l~~~~~~~~~Pll~l~y~i~P~s~~g~~~r~PfvK 102 (107)
+.++.++++++| ||+||+||+.++..||++.++|++++..++++......+.+|..+.+|.++|.+++|++.++||+|
T Consensus 272 l~~lLL~~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~P~~~l~~~kw~pf~k 351 (743)
T TIGR00870 272 LFRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIK 351 (743)
T ss_pred HHHHHHHHHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHHhhcChHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 346778999999 999999999999999999999999988999999988888999999999999999999999999999
Q ss_pred ccccC
Q psy7033 103 FVVHA 107 (107)
Q Consensus 103 F~~h~ 107 (107)
|+.|+
T Consensus 352 f~~~~ 356 (743)
T TIGR00870 352 FIFHS 356 (743)
T ss_pred HHHHH
Confidence 99873
No 3
>KOG3614|consensus
Probab=99.18 E-value=7.3e-12 Score=112.01 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=59.3
Q ss_pred hcchhhhhhhhcCCC---Ccccccccccc--ceeehhHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy7033 11 TGIGDKLITHRCQSH---KYQPLPTNFFQ--FVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYM 85 (107)
Q Consensus 11 ~~~g~~ll~~~~~~~---~~L~lAi~~~q--FVAHp~~Q~~L~~~Wy~~l~~~~~~~~~~k~l~~~~~~~~~Pll~l~y~ 85 (107)
...+.+|+++++..| +||++|++++. |+|||.||.+|+++|||++.. +++.++|++.+++ ++|++.+.-+
T Consensus 640 e~~A~~LLt~el~~W~~~tCL~LAv~a~~r~FiAH~c~Q~lLt~~W~G~L~~--r~~~~~kvila~i---cpP~Il~l~~ 714 (1381)
T KOG3614|consen 640 EARALQLLTYELENWGNSTCLQLAVEANAREFIAHPCCQMLLTDKWYGNLQA--RNNPIWKVILALI---CPPLILTLLV 714 (1381)
T ss_pred HHHHHHHHHhHHhhcccccHHHHHHhcCCCceeccHhHHHHHHHHHhccccc--cCCCcHHHHHHHH---hhHHHHHhhc
Confidence 345678889999987 89999999998 999999999999999999853 7778899888765 8888777643
Q ss_pred H
Q psy7033 86 I 86 (107)
Q Consensus 86 i 86 (107)
=
T Consensus 715 k 715 (1381)
T KOG3614|consen 715 K 715 (1381)
T ss_pred c
Confidence 3
No 4
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=59.00 E-value=40 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7033 63 LLEKLLDLSKIILIFPYYCLLYMISGMS 90 (107)
Q Consensus 63 ~~~k~l~~~~~~~~~Pll~l~y~i~P~s 90 (107)
....++.-+.+++++|++++++++...+
T Consensus 88 ~~~dlL~G~liGff~g~~~~~~L~~~~~ 115 (140)
T PF13373_consen 88 HNDDLLWGLLIGFFFGLFSLFWLLREDG 115 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence 4567888999999999999998877654
No 5
>KOG4349|consensus
Probab=50.64 E-value=23 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhcccee
Q psy7033 63 LLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRKPFV 101 (107)
Q Consensus 63 ~~~k~l~~~~~~~~~Pll~l~y~i~P~s~~g~~~r~Pfv 101 (107)
..|-++..+++.+.--++ .++-..|.|.|+|+..|+.
T Consensus 50 FLWal~Ss~fih~~A~il--alFTLRkHkygrF~si~il 86 (143)
T KOG4349|consen 50 FLWALLSSMFIHLGATIL--ALFTLRKHKYGRFISIPIL 86 (143)
T ss_pred HHHHHHHHHHHHhhHHHH--HHHHhhcCccceeeehHHH
Confidence 355555555544433333 3455678899999998875
No 6
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=42.06 E-value=12 Score=24.38 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=20.1
Q ss_pred CchhhhhHhhhcchhhhhhhhcCCCCccccccccccceeehhHHHHHHHHHhcC
Q psy7033 1 MSESGLAQVATGIGDKLITHRCQSHKYQPLPTNFFQFVAHSNIQQLLAAMWYDG 54 (107)
Q Consensus 1 ~~~~~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~~qFVAHp~~Q~~L~~~Wy~~ 54 (107)
|||..++..|.-+|+-|-.+..|. ++ -|.+|.++|--+
T Consensus 26 ms~e~i~~~A~~iGdyLA~~vdP~---------N~-------EerlLkELW~va 63 (81)
T PF11588_consen 26 MSEETIANLAYQIGDYLAKNVDPK---------NP-------EERLLKELWDVA 63 (81)
T ss_dssp HHTT----HHHHHHHHHHT--------------SH-------HHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCC---------CH-------HHHHHHHHHHhC
Confidence 567778888899999887776665 22 267777777643
No 7
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=31.17 E-value=1.2e+02 Score=17.85 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7033 69 DLSKIILIFPYYCLLYM 85 (107)
Q Consensus 69 ~~~~~~~~~Pll~l~y~ 85 (107)
+.+..++++|++++..+
T Consensus 13 flfl~v~l~PiLsV~~V 29 (47)
T TIGR02972 13 LGFIIVVLFPILSVAGI 29 (47)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456789999998743
No 8
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=29.83 E-value=1.3e+02 Score=18.30 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7033 70 LSKIILIFPYYCLLY 84 (107)
Q Consensus 70 ~~~~~~~~Pll~l~y 84 (107)
.+..++++|++++..
T Consensus 22 lfl~~~l~PiL~v~~ 36 (56)
T PF06796_consen 22 LFLAVVLFPILAVAF 36 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445678999999874
No 9
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=28.95 E-value=82 Score=19.91 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7033 69 DLSKIILIFPYYCLLYMISG 88 (107)
Q Consensus 69 ~~~~~~~~~Pll~l~y~i~P 88 (107)
..+...+.+|+..++-++.|
T Consensus 9 r~lr~mfiYP~~Yi~lwlfP 28 (76)
T PF11970_consen 9 RQLRSMFIYPLVYIVLWLFP 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455569999999999988
No 10
>PF08352 oligo_HPY: Oligopeptide/dipeptide transporter, C-terminal region; InterPro: IPR013563 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry features a region found towards the C terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (IPR003439 from INTERPRO). All characterised members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the haem precursor delta-aminolevulinic acid. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0015833 peptide transport
Probab=27.23 E-value=30 Score=20.30 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=10.6
Q ss_pred eehhHHHHHHHH
Q psy7033 39 AHSNIQQLLAAM 50 (107)
Q Consensus 39 AHp~~Q~~L~~~ 50 (107)
.||+.|.+|+++
T Consensus 14 ~HPYT~~Ll~a~ 25 (64)
T PF08352_consen 14 RHPYTRALLAAV 25 (64)
T ss_pred cCHHHHHHHHcC
Confidence 599999999985
No 11
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=26.26 E-value=1e+02 Score=17.61 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7033 69 DLSKIILIFPYYCLLY 84 (107)
Q Consensus 69 ~~~~~~~~~Pll~l~y 84 (107)
+.+..++++|++++..
T Consensus 8 flfl~~~l~PiLsV~~ 23 (42)
T TIGR02973 8 FLFLAAVIWPVLSVIT 23 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445677999999874
No 12
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.61 E-value=36 Score=25.56 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=17.4
Q ss_pred chhhhhHhhhcchhhhhhhhc
Q psy7033 2 SESGLAQVATGIGDKLITHRC 22 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~ 22 (107)
|-..||+.|+|++|+|+++..
T Consensus 90 SmkTla~IA~G~~dnLi~RAA 110 (191)
T COG0163 90 SMKTLAAIAHGFADNLITRAA 110 (191)
T ss_pred cHHHHHHHHhcccccHHHHHH
Confidence 446799999999999998743
No 13
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=25.51 E-value=1.5e+02 Score=18.26 Aligned_cols=28 Identities=11% Similarity=0.066 Sum_probs=15.5
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHH
Q psy7033 55 LPGFRRKPLLEKLLDLSKIILIFPYYCLLY 84 (107)
Q Consensus 55 l~~~~~~~~~~k~l~~~~~~~~~Pll~l~y 84 (107)
.+.-++++ -|+. +.+..+-+||++++.+
T Consensus 12 v~~~~~r~-e~it-Fl~la~~l~PilsV~~ 39 (62)
T COG4459 12 VKPSEKRS-EWIT-FLFLAFGLFPILSVAF 39 (62)
T ss_pred CCcchhhh-HHHH-HHHHHHHHHHHHHHHH
Confidence 33444444 2222 3334456899999875
No 14
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=25.12 E-value=1.8e+02 Score=19.99 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccc
Q psy7033 44 QQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMIS-GMSDTGK 94 (107)
Q Consensus 44 Q~~L~~~Wy~~l~~~~~~~~~~k~l~~~~~~~~~Pll~l~y~i~-P~s~~g~ 94 (107)
--.++--|||.+....+++ ++..++. -+=+-..-|.+. |..|+|.
T Consensus 11 N~FMTfAWYGHLK~~~~~p-l~~ail~-----SWgIAffEY~l~VPANRiG~ 56 (108)
T PF04342_consen 11 NIFMTFAWYGHLKFKSSKP-LWIAILI-----SWGIAFFEYCLQVPANRIGY 56 (108)
T ss_pred HHHHHHHHHHHhhccccCc-HHHHHHH-----HHHHHHHHHHHhCcchhhhc
Confidence 3467778999987544444 3333222 222222345554 7778774
No 15
>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain. Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular
Probab=23.91 E-value=1.2e+02 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7033 59 RRKPLLEKLLDLSKIILIFPYYCLLYMISGMS 90 (107)
Q Consensus 59 ~~~~~~~k~l~~~~~~~~~Pll~l~y~i~P~s 90 (107)
+..+.+.+.+.....++.+=++++.|++.|+.
T Consensus 63 ~~p~~~~r~~v~~~q~vfy~~~~~~YlisPr~ 94 (168)
T cd01053 63 GGPGWWFRRFVAQHQAVFYNAYFLLYLISPRL 94 (168)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34557788888888888999999999999975
No 16
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=23.64 E-value=60 Score=23.52 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred chhhhhHhhhcchhhhhhhhcCCCC---cccccccccc-ceeehhHHHHHHHHHhc
Q psy7033 2 SESGLAQVATGIGDKLITHRCQSHK---YQPLPTNFFQ-FVAHSNIQQLLAAMWYD 53 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~~~---~L~lAi~~~q-FVAHp~~Q~~L~~~Wy~ 53 (107)
|-..++..|+|++|++++.....+. .+-.|-.-+. =-.||-.|+-+..+--.
T Consensus 86 SanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~ 141 (177)
T TIGR02113 86 SANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKI 141 (177)
T ss_pred CHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHC
Confidence 3456889999999999987555431 1111111111 23488888888887543
No 17
>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope
Probab=22.15 E-value=1.1e+02 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7033 60 RKPLLEKLLDLSKIILIFPYYCLLYMISGMS 90 (107)
Q Consensus 60 ~~~~~~k~l~~~~~~~~~Pll~l~y~i~P~s 90 (107)
..+++-+.+.....++.+-++++.|++.|+.
T Consensus 104 ~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ 134 (207)
T PF01786_consen 104 KPSWFDRFLVLHAQGVFYNIFFLLYLVSPRT 134 (207)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 4456778888888999999999999999976
Done!