Query psy7033
Match_columns 107
No_of_seqs 101 out of 198
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 01:03:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mvl_A PPC decarboxylase athal 29.1 32 0.0011 24.7 2.4 48 3-50 107-158 (209)
2 3d0w_A YFLH protein; GRAM-posi 23.9 29 0.00098 22.7 1.2 38 1-54 48-85 (104)
3 2y69_L Cytochrome C oxidase su 17.6 1.7E+02 0.0057 17.1 4.4 21 64-84 38-58 (63)
4 3zqu_A Probable aromatic acid 15.4 49 0.0017 23.7 0.9 47 2-50 104-154 (209)
5 3lqk_A Dipicolinate synthase s 15.1 51 0.0017 23.4 0.9 21 2-22 96-116 (201)
6 2ejb_A Probable aromatic acid 14.9 52 0.0018 23.0 1.0 48 2-51 91-142 (189)
7 1sbz_A Probable aromatic acid 14.3 55 0.0019 23.2 0.9 48 2-51 87-138 (197)
8 3mcu_A Dipicolinate synthase, 13.5 60 0.002 23.2 0.9 19 2-20 94-112 (207)
9 1qzu_A Hypothetical protein MD 13.5 83 0.0028 22.3 1.7 51 2-52 106-160 (206)
10 3may_A RV0203, possible export 13.4 1.2E+02 0.0039 19.6 2.2 14 37-50 56-69 (101)
No 1
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=29.10 E-value=32 Score=24.68 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=29.8
Q ss_pred hhhhhHhhhcchhhhhhhhcCCC---Ccccccccccc-ceeehhHHHHHHHH
Q psy7033 3 ESGLAQVATGIGDKLITHRCQSH---KYQPLPTNFFQ-FVAHSNIQQLLAAM 50 (107)
Q Consensus 3 ~~~~~~~~~~~g~~ll~~~~~~~---~~L~lAi~~~q-FVAHp~~Q~~L~~~ 50 (107)
-.-+|..|+|++|+|++.....+ ..+-+|-.-+. --.||-.|.-|..+
T Consensus 107 anTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPaMN~~M~e~P~t~~nl~~L 158 (209)
T 1mvl_A 107 ANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSL 158 (209)
T ss_dssp HHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHccccCcHHHHHHHHhcCCCCEEEEECCChhHhhChhHHHHHHHH
Confidence 45688999999999998422221 12222222122 23588999988887
No 2
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=23.85 E-value=29 Score=22.73 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=27.3
Q ss_pred CchhhhhHhhhcchhhhhhhhcCCCCccccccccccceeehhHHHHHHHHHhcC
Q psy7033 1 MSESGLAQVATGIGDKLITHRCQSHKYQPLPTNFFQFVAHSNIQQLLAAMWYDG 54 (107)
Q Consensus 1 ~~~~~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~~qFVAHp~~Q~~L~~~Wy~~ 54 (107)
|||..++.+|.-+|+-|-.+..|. + .-|.+|.++|--+
T Consensus 48 msee~I~~~A~~iGdyLA~~vdP~---------N-------~EerlLkELW~Va 85 (104)
T 3d0w_A 48 LDDGKLVKSAAILGDYLAKHEEPQ---------N-------GEEMLLQELWSVA 85 (104)
T ss_dssp HTTTCCCCHHHHHHHHHHTCCCCC---------S-------HHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCC---------C-------HHHHHHHHHHHhC
Confidence 567778888888888888877666 2 2377777777643
No 3
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=17.61 E-value=1.7e+02 Score=17.13 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7033 64 LEKLLDLSKIILIFPYYCLLY 84 (107)
Q Consensus 64 ~~k~l~~~~~~~~~Pll~l~y 84 (107)
..+....+..++..|++...+
T Consensus 38 ~~~~~~f~g~GF~~PF~i~~~ 58 (63)
T 2y69_L 38 LAMMTLFFGSGFAAPFFIVRH 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 355666778888999997665
No 4
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=15.41 E-value=49 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=27.2
Q ss_pred chhhhhHhhhcchhhhhhh---hcCCC-CccccccccccceeehhHHHHHHHH
Q psy7033 2 SESGLAQVATGIGDKLITH---RCQSH-KYQPLPTNFFQFVAHSNIQQLLAAM 50 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~---~~~~~-~~L~lAi~~~qFVAHp~~Q~~L~~~ 50 (107)
|-..+|..|+|++|+|+++ ....- ..+-++-. ++ -.||-.|+-+.++
T Consensus 104 SanTlakiA~GiaDnLltraadv~Lk~~~plvl~Pa-em-~~~~~~~~Nm~~L 154 (209)
T 3zqu_A 104 STGTLSAVATGACNNLIERAADVALKERRPLVLVPR-EA-PFSSIHLENMLKL 154 (209)
T ss_dssp CHHHHHHHHHTCCCSHHHHHHHHHHHHTCCEEEEEC-CS-SCCHHHHHHHHHH
T ss_pred CHhHHHHHHccccCcHHHHHHHHHHhcCCcEEEEEc-cc-ccCHHHHHHHHHH
Confidence 3456899999999999987 21110 11222221 22 1377777766655
No 5
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=15.06 E-value=51 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=16.9
Q ss_pred chhhhhHhhhcchhhhhhhhc
Q psy7033 2 SESGLAQVATGIGDKLITHRC 22 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~ 22 (107)
|-..+|..|+|++|+|+++..
T Consensus 96 TanTlAkiA~GiaDnLlt~aa 116 (201)
T 3lqk_A 96 TGNSTSKFANAMTDSPVLMGA 116 (201)
T ss_dssp CHHHHHHHHTTCCCSHHHHHH
T ss_pred CHHHHHHHHCcccCcHHHHHH
Confidence 345689999999999998743
No 6
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=14.91 E-value=52 Score=23.00 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=29.7
Q ss_pred chhhhhHhhhcchhhhhhhhcCCC----CccccccccccceeehhHHHHHHHHH
Q psy7033 2 SESGLAQVATGIGDKLITHRCQSH----KYQPLPTNFFQFVAHSNIQQLLAAMW 51 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~~----~~L~lAi~~~qFVAHp~~Q~~L~~~W 51 (107)
|-..+|..|+|++|+|+++..... ..+-+|-. ++. .||-.|+-+..+-
T Consensus 91 TanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~Pa-~m~-~~~~~~~N~~~L~ 142 (189)
T 2ejb_A 91 STNTLSCIANGINKNLIHRVGEVALKERVPLVLLVR-EAP-YNEIHLENMLKIT 142 (189)
T ss_dssp CHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEEEC-CSS-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEEEC-CCC-CCHHHHHHHHHHH
Confidence 345688999999999998743321 12222322 222 4788887777663
No 7
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=14.31 E-value=55 Score=23.18 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=29.7
Q ss_pred chhhhhHhhhcchhhhhhhhcCC----CCccccccccccceeehhHHHHHHHHH
Q psy7033 2 SESGLAQVATGIGDKLITHRCQS----HKYQPLPTNFFQFVAHSNIQQLLAAMW 51 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~----~~~L~lAi~~~qFVAHp~~Q~~L~~~W 51 (107)
|-..+|..|+|++|+|+++.... -..+-+|-. ++ =.||-.|+-+.++-
T Consensus 87 TanTlAkiA~GiaDnLlt~aa~v~L~~~~plvl~Pa-~m-~~~~~~~~N~~~L~ 138 (197)
T 1sbz_A 87 SMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR-EM-PLSTIHLENMLALS 138 (197)
T ss_dssp CHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEEC-CS-SBCHHHHHHHHHHH
T ss_pred CHhHHHHHHccccccHHHHHHHHHHhcCCCEEEEEC-CC-CCCHHHHHHHHHHH
Confidence 34568899999999999974311 012222222 33 23788888877764
No 8
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=13.52 E-value=60 Score=23.19 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=16.2
Q ss_pred chhhhhHhhhcchhhhhhh
Q psy7033 2 SESGLAQVATGIGDKLITH 20 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~ 20 (107)
|-..+|..|+|++|+|+++
T Consensus 94 TanTlAKiA~GiaDnLlt~ 112 (207)
T 3mcu_A 94 TGNSMSKFANAMTDSPVLM 112 (207)
T ss_dssp CHHHHHHHHTTCCCSHHHH
T ss_pred CHHHHHHHHccccCcHHHH
Confidence 3456899999999999987
No 9
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=13.46 E-value=83 Score=22.28 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=30.0
Q ss_pred chhhhhHhhhcchhhhhhhhcCCC---Ccccccccccc-ceeehhHHHHHHHHHh
Q psy7033 2 SESGLAQVATGIGDKLITHRCQSH---KYQPLPTNFFQ-FVAHSNIQQLLAAMWY 52 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~~---~~L~lAi~~~q-FVAHp~~Q~~L~~~Wy 52 (107)
|-..+|..|+|++|+|++.....+ ..+-+|-.-+. -=.||-.|+-+.++--
T Consensus 106 TanTlAKiA~GiaDnLlt~~~~alk~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~ 160 (206)
T 1qzu_A 106 DANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKA 160 (206)
T ss_dssp CHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEECCCHHHHTSSTHHHHHHHHHT
T ss_pred CHHHHHHHHccccCCHHHHHHHHhcCCCCEEEEecCCccccCCHHHHHHHHHHHH
Confidence 345688999999999998754332 11112211111 2247777887777643
No 10
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=13.35 E-value=1.2e+02 Score=19.64 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=9.0
Q ss_pred ceeehhHHHHHHHH
Q psy7033 37 FVAHSNIQQLLAAM 50 (107)
Q Consensus 37 FVAHp~~Q~~L~~~ 50 (107)
|.+||.+..-|..|
T Consensus 56 f~aNPqv~~dL~~I 69 (101)
T 3may_A 56 FEANPKVASDLHAL 69 (101)
T ss_dssp HHHCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHH
Confidence 77777776655544
Done!