Query psy7033
Match_columns 107
No_of_seqs 101 out of 198
Neff 6.1
Searched_HMMs 13730
Date Sat Aug 17 01:03:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7033.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7033hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g5qa_ c.34.1.1 (A:) Epidermi 19.6 23 0.0017 23.0 1.8 42 3-51 84-134 (174)
2 d1mvla_ c.34.1.1 (A:) 4'-phosp 19.0 35 0.0025 22.2 2.6 47 4-51 90-141 (182)
3 d1sbza_ c.34.1.1 (A:) Probable 18.9 16 0.0011 23.7 0.7 48 2-50 87-137 (186)
4 d1qzua_ c.34.1.1 (A:) 4'-phosp 17.4 36 0.0026 22.2 2.3 51 3-54 92-147 (181)
5 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 14.8 29 0.0021 22.7 1.3 49 3-52 90-141 (183)
6 d1r2ja1 a.29.3.1 (A:213-365) P 12.7 43 0.0031 20.1 1.6 43 5-53 16-62 (153)
7 d3mdea1 a.29.3.1 (A:242-395) M 11.5 49 0.0036 19.6 1.6 43 5-53 17-63 (154)
8 d1twya_ c.94.1.1 (A:) ABC tran 9.0 84 0.0061 20.0 2.2 58 2-59 38-108 (249)
9 d1ivha1 a.29.3.1 (A:242-392) I 8.0 75 0.0055 18.7 1.5 42 5-52 16-61 (151)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.3 1.8E+02 0.013 19.4 3.5 34 60-93 48-85 (248)
No 1
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}
Probab=19.58 E-value=23 Score=22.97 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=29.3
Q ss_pred hhhhhHhhhcchhhhhhhhcCCCCcccccccccc-ce--------eehhHHHHHHHHH
Q psy7033 3 ESGLAQVATGIGDKLITHRCQSHKYQPLPTNFFQ-FV--------AHSNIQQLLAAMW 51 (107)
Q Consensus 3 ~~~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~~q-FV--------AHp~~Q~~L~~~W 51 (107)
-.-++..|+|++|++++...... +..- |+ .||-.|+-+..+-
T Consensus 84 aNtlaKiA~GiaDnllt~~~la~-------~~piiiaPaMn~~Mw~~p~~~~nl~~L~ 134 (174)
T d1g5qa_ 84 ANTINKIANGICDNLLTTVCLTG-------YQKLFIFPNMNIRMWGNPFLQKNIDLLK 134 (174)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHT-------GGGEEEEECSCHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhheeecc-------cccEEEEecccHHHHhhhhHHHHHHHHH
Confidence 34688999999999998654332 2222 22 4899999888874
No 2
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.96 E-value=35 Score=22.23 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=26.8
Q ss_pred hhhhHhhhcchhhhhhhhcCCCCc---ccc--ccccccceeehhHHHHHHHHH
Q psy7033 4 SGLAQVATGIGDKLITHRCQSHKY---QPL--PTNFFQFVAHSNIQQLLAAMW 51 (107)
Q Consensus 4 ~~~~~~~~~~g~~ll~~~~~~~~~---L~l--Ai~~~qFVAHp~~Q~~L~~~W 51 (107)
.-++..|+|++|++++.....+.+ +-. |++-+ =-.||-+|.-+.++-
T Consensus 90 NtiaK~A~GiaD~llt~~~la~~~~kPv~iaPaMn~~-Mw~~p~t~~Nl~~L~ 141 (182)
T d1mvla_ 90 NTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTL-MWNNPFTERHLLSLD 141 (182)
T ss_dssp HHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHH-HHHSHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhhHHHHHhccCCCCEEEEecccHH-HHhhHHHHHHHHHHh
Confidence 457888999999998753222210 001 11111 124788888877763
No 3
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=18.89 E-value=16 Score=23.74 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=29.1
Q ss_pred chhhhhHhhhcchhhhhhhhcCCC---CccccccccccceeehhHHHHHHHH
Q psy7033 2 SESGLAQVATGIGDKLITHRCQSH---KYQPLPTNFFQFVAHSNIQQLLAAM 50 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~~---~~L~lAi~~~qFVAHp~~Q~~L~~~ 50 (107)
|-.-+|..|+|++|+|+++..... .+.-.++..++. .||-.|+-+..+
T Consensus 87 TanTlAKiA~GiaDnLlt~~a~~~~k~~~~lv~~p~em~-~~~~~~~N~~~L 137 (186)
T d1sbza_ 87 SMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMP-LSTIHLENMLAL 137 (186)
T ss_dssp CHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEECCSS-BCHHHHHHHHHH
T ss_pred cHhHHHHHHcCCCCCHHHHHHHHhccccceeEEeecCCc-cCHHHHHHHHHH
Confidence 345688999999999998754321 222234444442 266666666554
No 4
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.44 E-value=36 Score=22.18 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=31.4
Q ss_pred hhhhhHhhhcchhhhhhhhcCCCC---cccc--ccccccceeehhHHHHHHHHHhcC
Q psy7033 3 ESGLAQVATGIGDKLITHRCQSHK---YQPL--PTNFFQFVAHSNIQQLLAAMWYDG 54 (107)
Q Consensus 3 ~~~~~~~~~~~g~~ll~~~~~~~~---~L~l--Ai~~~qFVAHp~~Q~~L~~~Wy~~ 54 (107)
-.-++-.|+|++|++++.....+. .+-. |++-+ =-.||-+|.-++++--.+
T Consensus 92 ANtiaK~A~GiaD~lls~~lla~~~~kPv~iaPaMn~~-Mw~np~tq~nl~~Lk~~G 147 (181)
T d1qzua_ 92 ANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTA-MWEHPITAQQVDQLKAFG 147 (181)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEECCCHH-HHTSSTHHHHHHHHHTTC
T ss_pred HHHHHHHhccCcCHHHHHHHHhccCCCCEEEEECccHH-HHhhHHHHHHHHHHHHCC
Confidence 345788999999999876443321 0111 22111 124899999999885444
No 5
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=14.77 E-value=29 Score=22.66 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=29.3
Q ss_pred hhhhhHhhhcchhhhhhhhcCCCCc-ccc--ccccccceeehhHHHHHHHHHh
Q psy7033 3 ESGLAQVATGIGDKLITHRCQSHKY-QPL--PTNFFQFVAHSNIQQLLAAMWY 52 (107)
Q Consensus 3 ~~~~~~~~~~~g~~ll~~~~~~~~~-L~l--Ai~~~qFVAHp~~Q~~L~~~Wy 52 (107)
-.-+|..|+|++|+|.+.......+ +-. |++.+ -=.||-+|.-+.++--
T Consensus 90 aNtlaKiA~GiaDnL~t~~~la~~~pvviaPaMn~~-M~~np~~~~ni~~L~~ 141 (183)
T d1p3y1_ 90 ANILGQTANGVAMNLVATTVLAHPHNTIFFPNMNDL-MWNKTVVSRNIEQLRK 141 (183)
T ss_dssp HHHHHHHHTTCCSSHHHHHHHHSSSCCEEEECCCHH-HHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhhHHHhhccCceEEEEccchH-HHhhhhhHHHHHHHHH
Confidence 4568899999999998865443321 111 11111 2257888888777643
No 6
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Probab=12.72 E-value=43 Score=20.11 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=26.2
Q ss_pred hhhHhhhcchhhhhhhhcCCCCcccccccccc----ceeehhHHHHHHHHHhc
Q psy7033 5 GLAQVATGIGDKLITHRCQSHKYQPLPTNFFQ----FVAHSNIQQLLAAMWYD 53 (107)
Q Consensus 5 ~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~~q----FVAHp~~Q~~L~~~Wy~ 53 (107)
++++.+.|+.+..+... ++.|-+-+| -..||.+|+.|.++.-.
T Consensus 16 ~ia~~a~G~a~~al~~a------~~ya~~R~~fG~pl~~~q~vq~~la~~~~~ 62 (153)
T d1r2ja1 16 SVAWGCVGILRACRTAA------VAHARTREQFGRPLGDHQLVAGHIADLWTA 62 (153)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHTTCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHhhcccCCccccccchhhhhhhhhccc
Confidence 57777777777665432 111111222 67789999999887543
No 7
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=11.46 E-value=49 Score=19.60 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=25.7
Q ss_pred hhhHhhhcchhhhhhhhcCCCCcccccccccc----ceeehhHHHHHHHHHhc
Q psy7033 5 GLAQVATGIGDKLITHRCQSHKYQPLPTNFFQ----FVAHSNIQQLLAAMWYD 53 (107)
Q Consensus 5 ~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~~q----FVAHp~~Q~~L~~~Wy~ 53 (107)
++++.+-|+++....... +.|-+-++ -..||.+|+.|.+++..
T Consensus 17 ~~aa~~~G~~~~a~~~a~------~~a~~R~~~g~pl~~~~~v~~~l~~~~~~ 63 (154)
T d3mdea1 17 PVAAGAVGLAQRALDEAT------KYALERKTFGKLLAEHQGISFLLADMAMK 63 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHTTCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HhhhcccccCcchhhhhHHHHHHHHHHHH
Confidence 566677777755544311 11112222 56789999999988765
No 8
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]}
Probab=9.02 E-value=84 Score=19.97 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=31.7
Q ss_pred chhhhhHhhhcchhhhhhhhcCCCC----cc-cccccccc--ceeehh------HHHHHHHHHhcCCCCCc
Q psy7033 2 SESGLAQVATGIGDKLITHRCQSHK----YQ-PLPTNFFQ--FVAHSN------IQQLLAAMWYDGLPGFR 59 (107)
Q Consensus 2 ~~~~~~~~~~~~g~~ll~~~~~~~~----~L-~lAi~~~q--FVAHp~------~Q~~L~~~Wy~~l~~~~ 59 (107)
|..|+.+..+|..|.-...+...-. .+ ...+-++. ||.||. .-..|..++-+....|.
T Consensus 38 S~~~~~~l~~g~~di~~~s~~~~~~e~~~~~~~~~ia~d~lviiv~~~np~~~lt~~ql~~I~~g~i~~W~ 108 (249)
T d1twya_ 38 STAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWK 108 (249)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCCTTTCCTTCEEEEEEEEEEEEEECTTCCCCEECHHHHHHHHHTSCCBGG
T ss_pred cHHHHHHHHcCCCeeeecccchhhhhhhcceeeEEEEeeccccccccccccccccHHHHHhhhhhhccchh
Confidence 4567777888777765543332211 11 11122333 777765 25567888877766664
No 9
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.99 E-value=75 Score=18.72 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=25.8
Q ss_pred hhhHhhhcchhhhhhhhcCCCCcccccccc---cc-ceeehhHHHHHHHHHh
Q psy7033 5 GLAQVATGIGDKLITHRCQSHKYQPLPTNF---FQ-FVAHSNIQQLLAAMWY 52 (107)
Q Consensus 5 ~~~~~~~~~g~~ll~~~~~~~~~L~lAi~~---~q-FVAHp~~Q~~L~~~Wy 52 (107)
++++.+.|+++..+... ++.|-+- .. -..||.+|+.|.++.-
T Consensus 16 ~~aa~~~G~~~~al~~a------~~~a~~r~~~g~pl~~~~~vq~~la~~~~ 61 (151)
T d1ivha1 16 VLAGGPLGLMQAVLDHT------IPYLHVREAFGQKIGHFQLMQGKMADMYT 61 (151)
T ss_dssp HHTHHHHHHHHHHHHHH------HHHHTTCEETTEEGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHhhccccccchhhhhHHHHHHHHHHH
Confidence 56677777777666542 1112222 22 6678999999988754
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=1.8e+02 Score=19.44 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=23.2
Q ss_pred ccchHHHHH----HHHHHHHHHHHHHHHHHHhcCCccc
Q psy7033 60 RKPLLEKLL----DLSKIILIFPYYCLLYMISGMSDTG 93 (107)
Q Consensus 60 ~~~~~~k~l----~~~~~~~~~Pll~l~y~i~P~s~~g 93 (107)
++...+|.+ ..+..+.++|+++.+|+-+-|=.-|
T Consensus 48 ~r~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tg 85 (248)
T d2r6gf1 48 RKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSST 85 (248)
T ss_dssp SCCTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSST
T ss_pred cCccceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCC
Confidence 444555544 4777888999999999877654333
Done!