RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7033
(107 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 75.1 bits (185), Expect = 3e-17
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 37 FVAHSNIQQLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKII 96
FVA N QQLL+ W + L G+RRK + +L+ + I L FP +Y+I+ +S G+
Sbjct: 286 FVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFK 345
Query: 97 RKPFVKFVVHA 107
KPF+KF+ H+
Sbjct: 346 WKPFIKFIFHS 356
>gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase
domain of Thermoanaerobacter tengcongensis and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in Thermoanaerobacter tengcongensis
glycerophosphodiester phosphodiesterase (TtGDE, EC
3.1.4.46) and its uncharacterized homologs. Members in
this family show high sequence similarity to
Escherichia coli GP-GDE, which catalyzes the
degradation of glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. Despite the fact that most of GDPD family
members exist as the monomer, TtGDE can function as a
dimeric unit. Its catalytic mechanism is based on the
general base-acid catalysis, which is similar to that
of phosphoinositide-specific phospholipases C (PI-PLCs,
EC 3.1.4.11). A divalent metal cation is required for
the enzyme activity of TtGDE.
Length = 230
Score = 28.3 bits (64), Expect = 0.69
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 43 IQQLLAAMWYDGLPGFRRKPLLEKLLDL 70
+++L A W+D + P LE++LDL
Sbjct: 70 LKKLDAGSWFDEKFTGEKIPTLEEVLDL 97
>gnl|CDD|216114 pfam00777, Glyco_transf_29, Glycosyltransferase family 29
(sialyltransferase). Members of this family belong to
glycosyltransferase family 29.
Length = 268
Score = 27.2 bits (61), Expect = 1.4
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 25 HKYQPL-PTNFFQFVA-HSNIQQLLAAMWYDGL---PGFRRKPLLEKLLDLSKIILIFPY 79
YQ L FF V L A GL F + L LD K+ ++ P
Sbjct: 115 KSYQELDRNTFFVLVPFKGLDLLWLPAFLTKGLGTYRSFWKYVALRIPLDPQKVRILNPE 174
Query: 80 Y 80
+
Sbjct: 175 F 175
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N- acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 26.6 bits (60), Expect = 2.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 12/42 (28%)
Query: 57 GFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRK 98
G RRK L L K+ + G+ KI+++
Sbjct: 60 GLRRKGSLANLKAPFKL------------LKGVLQARKILKR 89
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 26.4 bits (59), Expect = 3.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 28/84 (33%)
Query: 10 ATGIG---DKLITHRCQSHKYQPLP---TNFFQFVAHSNIQQLLAAM------------- 50
ATG+ +KL R ++H Y LP N+F+F+A ++ +A +
Sbjct: 1117 ATGVATQDEKL---R-KNH-YHGLPEMVMNYFEFIAEE-TREWMAQLGVRSLEDLIGRTD 1170
Query: 51 WYDGLPGFRRKPLLEKLLDLSKII 74
+ L G K ++ LDLS ++
Sbjct: 1171 LLEELEGETAK---QQKLDLSPLL 1191
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase.
Length = 361
Score = 26.5 bits (59), Expect = 3.5
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 16 KLITHRCQSHKYQPLPTNFFQFVAHSNIQQLLAAMWYDGLPGFRRKPLLEKL 67
+L+ C H FFQ V H + L ++ + F + PL EK
Sbjct: 62 RLVREACLKH-------GFFQVVNHG-VDAALIRAAHEYMDAFFKLPLSEKQ 105
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional.
Length = 428
Score = 25.9 bits (57), Expect = 4.9
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 49 AMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMS 90
A++Y GL R K +L L +++ + F C+L+++ G S
Sbjct: 51 ALFYGGL--IRGKNVLSML---TQVTVTFALVCILWVVYGYS 87
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase,
class 6 nitrilases). DCase hydrolyses
N-carbamyl-D-amino acids to produce D-amino acids. It is
an important biocatalyst in the pharmaceutical industry,
producing useful D-amino acids for example in the
preparation of beta-lactam antibiotics. This subgroup
belongs to a larger nitrilase superfamily comprised of
nitrile- or amide-hydrolyzing enzymes and
amide-condensing enzymes, which depend on a Glu-Lys-Cys
catalytic triad. This superfamily has been classified in
the literature based on global and structure based
sequence analysis into thirteen different enzyme classes
(referred to as 1-13), this subgroup corresponds to
class 6. Members of this superfamily generally form
homomeric complexes, the basic building block of which
is a homodimer. Agrobacterium radiobacter DCase forms a
tetramer (dimer of dimers). Some DCases may form
trimers.
Length = 302
Score = 25.7 bits (57), Expect = 5.1
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 10 ATGIGDKLITHRCQSHKYQPLPTNFFQFVAHSNIQQ 45
AT + D++I C + F F H +
Sbjct: 261 ATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEH 296
>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase.
Alternate name: phosphoribosylformylglycinamidine
cyclo-ligase; AIRS; AIR synthase This enzyme is found as
a homodimeric monofunctional protein in prokaryotes and
as part of a larger, multifunctional protein, sometimes
with two copies of this enzyme in tandem, in eukaryotes
[Purines, pyrimidines, nucleosides, and nucleotides,
Purine ribonucleotide biosynthesis].
Length = 332
Score = 25.4 bits (56), Expect = 6.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 40 HSN-------IQQLLAAMWYDGLPGFRRKPLLEKLLDLSKI 73
HSN + + +A + Y+ P K L E+LL+ ++I
Sbjct: 184 HSNGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRI 224
>gnl|CDD|198435 cd10285, somatotropin_like, Somatotropin or growth hormone (GH),
placental lactogen, and related pituitary gland
hormones. Growth hormone (GH) or somatotropin is a
peptide hormone synthesized by the pituitary gland,
which mediates anabolic effects in development. GH is
known to activate, via binding to specific cellular
receptors, the MAPK/ERK and JAK-STAT signaling pathways.
Via the latter, it triggers the secretion of
insulin-like growth factor 1 (mostly in the liver).
Besides increasing body height, GH has been shown to
have a host of other effects.
Length = 180
Score = 25.1 bits (55), Expect = 7.5
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 45 QLLAAMWYDGLPGFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRKPFVKFV 104
Q L++++ + L + EKL DL + I + + G G+++++ + KF
Sbjct: 82 QFLSSVFTNQLHFGSSDRIYEKLKDLEEGIQTL----IRELEDGSPRGGQLLKQTYSKFD 137
Query: 105 VH 106
V+
Sbjct: 138 VN 139
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase,
the last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft
that separates the two domains includes the catalytic
center and permits a high degree of flexibility.
Length = 350
Score = 24.7 bits (55), Expect = 9.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 57 GFRRKPLLEKLLDLSKIILIFPYYCLLYMISGMSDTGKIIRK 98
G RRK L+KL K++ G+ KI++K
Sbjct: 58 GLRRKGSLKKLKAPFKLLK------------GVLQARKILKK 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.442
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,567,229
Number of extensions: 479010
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 22
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.2 bits)