RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7033
         (107 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.081
 Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 29/95 (30%)

Query: 15  DKLITH----RCQSHKYQPLPTN---FFQFVAH--SNIQQ----LLAAMWY--------- 52
             ++ H    +         P     F+  + H   NI+      L  M +         
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 53  ---DGLPGFRRKPLLEKLLDLSK----IILIFPYY 80
              D         +L  L  L      I    P Y
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541



 Score = 25.2 bits (54), Expect = 5.2
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 11/39 (28%)

Query: 59  RRKPLL---EKLLDLSKIILIFPYYCLLYMISGMSDTGK 94
           R +P L   + LL+L     +      +    G+  +GK
Sbjct: 133 RLQPYLKLRQALLELRPAKNVL-----ID---GVLGSGK 163


>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
            flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
            brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
          Length = 1479

 Score = 27.5 bits (62), Expect = 0.85
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 23/58 (39%)

Query: 33   NFFQFVAHSNIQQLLAAMWYDGLPGFR-------RKPLLE---------KLLDLSKII 74
            N F F+A   ++++LA +      GFR       R  LL            LDL+  +
Sbjct: 1137 NLFTFLAE-EVREILAGL------GFRSLNEVIGRTDLLHQVSRGAEHLDDLDLNPRL 1187


>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
            enzyme, substrate channeling, amidotransferase,
            flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
            {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
            1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
          Length = 1520

 Score = 27.5 bits (62), Expect = 0.98
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 24/59 (40%)

Query: 33   NFFQFVAHSNIQQLLAAMWYDGLPGFR-------RKPLLE----------KLLDLSKII 74
            NFF F+A   ++ LLA +      G+R       R  LL+          + L L  ++
Sbjct: 1172 NFFYFIAE-EVRSLLAHL------GYRSLDDIIGRTDLLKVRSDVQLSKTQNLTLDCLL 1223


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,668,595
Number of extensions: 87524
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 5
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)