RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7033
         (107 letters)



>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis
          sp.), pcc 6803 [TaxId: 1143]}
          Length = 98

 Score = 24.0 bits (51), Expect = 3.6
 Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 76 IFPYYCLLYMISGMSDTGKII 96
           + YYC  +  +GM   GK++
Sbjct: 78 TYTYYCEPHRGAGM--VGKVV 96


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 24.4 bits (53), Expect = 4.0
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 1   MSESGLAQVATGIGDKLITHRCQSHKYQPLPTNFFQFVAHSNIQQLLAAMWYDGLPG 57
           +  +       G   K+I      H+   +PT           +  L  +    +P 
Sbjct: 308 IVTATTIAALAG-ATKVIV--KTPHEAIGIPTKEANAAGIKATKMALNMLEGQRMPM 361


>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote
          (Prochlorothrix hollandica) [TaxId: 1223]}
          Length = 97

 Score = 23.2 bits (49), Expect = 5.1
 Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 2/21 (9%)

Query: 76 IFPYYCLLYMISGMSDTGKII 96
           + +YC  +  +GM   G I 
Sbjct: 77 TYSFYCTPHRGAGM--VGTIT 95


>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
           [TaxId: 562]}
          Length = 164

 Score = 23.6 bits (50), Expect = 6.9
 Identities = 5/31 (16%), Positives = 17/31 (54%)

Query: 43  IQQLLAAMWYDGLPGFRRKPLLEKLLDLSKI 73
           +  L+  ++ D L   +++ + +K+  L ++
Sbjct: 134 MDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164


>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas
          reinhardtii) [TaxId: 3055]}
          Length = 98

 Score = 22.9 bits (48), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 76 IFPYYCLLYMISGMSDTGKII 96
           + YYC  +  +GM   GKII
Sbjct: 78 EYGYYCEPHQGAGM--VGKII 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,045
Number of extensions: 17497
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.0 bits)