BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7035
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 32.7 bits (73), Expect = 0.060, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 11 NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF 68
N ++ + +L + V++ AG YTC SN G +AQ LG+ A P F
Sbjct: 51 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ-------LGVQAPPRF 101
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 11 NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF 68
N ++ + +L + V++ AG YTC SN G +AQ LG+ P F
Sbjct: 51 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ-------LGVQEPPRF 101
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 11 NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF 68
N ++ + +L + V++ AG YTC SN G +AQ LG+ P F
Sbjct: 243 NYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ-------LGVQEPPRF 293
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 6 VQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
+Q NN++ SLV+ V + G YTC N G S+A
Sbjct: 54 MQFKNNVA--------SLVINKVDHSDVGEYTCKAENSVGAVASSA 91
>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
Length = 125
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
VIV N SL L+NV AG Y C +G G +N +
Sbjct: 79 VIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLE 115
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI 58
++ + SL + NV + AG Y CV N G S K ++
Sbjct: 149 VLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56
SN L + N + AG Y CV N G + Q T Y
Sbjct: 255 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 292
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
IV +L + V ++ G Y CV N G+ QS+AQ
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56
SN L + N + AG Y CV N G + Q T Y
Sbjct: 256 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 13 SAGVIVSNQS---LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
+AGV +++ L L+NVS AG YTC+ N G +A T +
Sbjct: 174 TAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 221
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 13 SAGVIVSNQS---LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
+AGV +++ L L+NVS AG YTC+ N G +A T +
Sbjct: 173 TAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 13 SAGVIVSNQS---LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
+AGV +++ L L+NVS AG YTC+ N G +A T +
Sbjct: 173 TAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVLE 220
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEG 45
N++L + NVS +G Y C+ SN G
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMG 299
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
++S+ +L NV+ G YTC+ SN G+ ++A
Sbjct: 393 VLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASA 427
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49
+ + L++ ++ AG Y CVG+N G+ +S
Sbjct: 160 ITIRGGKLMITYTRKSDAGKYVCVGTNMVGERES 193
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 18 VSNQSLVLQNVSRARAGHYTCVGSNGEGD 46
V++ LV++ V G+Y C +N GD
Sbjct: 357 VTDSGLVIKGVKNGDKGYYGCRATNEHGD 385
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
+ SN LY + + +I+ N LV N+S + +G+N +G NA
Sbjct: 62 NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENA 111
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49
S + V +L + N+ + G+Y C NG G G S
Sbjct: 765 SDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLS 801
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 21 QSLVLQNVSRARAGHYTCVGSNGEG 45
SL+++ V+ AG YTC+ +N G
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAG 90
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 AGVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
+G+ SN + L L NV+ A AG Y C SN G +A T
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEG 45
G V NQ SL++++V + G+YTCV N G
Sbjct: 57 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 90
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEG 45
G V NQ SL++++V + G+YTCV N G
Sbjct: 59 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 AGVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
+G+ SN + L L NV+ A AG Y C SN G +A T
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
L + V++A +G Y+ +NG G S A+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAE 94
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 AGVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
+G+ SN + L L NV+ A AG Y C SN G +A T
Sbjct: 176 SGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 217
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
L + V++A +G Y+ +NG G S A+
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAE 94
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEG 45
G V NQ SL++++V + G+YTCV N G
Sbjct: 58 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 91
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEG 45
G V NQ SL++++V + G+YTCV N G
Sbjct: 59 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 AGVIVSNQ--SLVLQNVSRARAGHYTCVGSNGEG 45
G V NQ SL++++V + G+YTCV N G
Sbjct: 59 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,003,801
Number of Sequences: 62578
Number of extensions: 62182
Number of successful extensions: 225
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 56
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)