Query psy7035
Match_columns 70
No_of_seqs 112 out of 654
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 01:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.5 5.3E-14 1.1E-18 82.4 7.0 61 2-63 35-97 (98)
2 cd05740 Ig_CEACAM_D4 Fourth im 99.5 6E-14 1.3E-18 81.3 6.1 55 2-57 37-91 (91)
3 cd05853 Ig6_Contactin-4 Sixth 99.5 8.4E-14 1.8E-18 80.5 5.6 58 2-60 22-85 (85)
4 cd05735 Ig8_DSCAM Eight immuno 99.5 2.1E-13 4.6E-18 78.3 7.2 60 2-62 21-87 (88)
5 cd05724 Ig2_Robo Second immuno 99.5 1.5E-13 3.2E-18 77.2 6.3 55 2-56 32-86 (86)
6 cd05852 Ig5_Contactin-1 Fifth 99.5 1.7E-13 3.8E-18 76.5 5.8 53 2-56 21-73 (73)
7 cd04970 Ig6_Contactin_like Six 99.5 1.4E-13 3E-18 78.0 5.3 58 2-60 22-85 (85)
8 cd05854 Ig6_Contactin-2 Sixth 99.5 1.7E-13 3.8E-18 78.3 5.8 57 2-59 22-84 (85)
9 cd05892 Ig_Myotilin_C C-termin 99.5 2.1E-13 4.4E-18 76.8 5.9 54 2-56 18-75 (75)
10 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 3.1E-13 6.8E-18 75.1 6.2 56 2-57 18-74 (74)
11 cd05893 Ig_Palladin_C C-termin 99.4 4E-13 8.7E-18 75.5 5.6 54 2-56 18-75 (75)
12 cd05744 Ig_Myotilin_C_like Imm 99.4 7.5E-13 1.6E-17 74.0 6.3 54 2-56 18-75 (75)
13 cd05867 Ig4_L1-CAM_like Fourth 99.4 9E-13 1.9E-17 73.4 6.5 54 2-56 21-75 (76)
14 cd05745 Ig3_Peroxidasin Third 99.4 5.5E-13 1.2E-17 73.9 5.6 53 2-56 22-74 (74)
15 cd04969 Ig5_Contactin_like Fif 99.4 1.1E-12 2.5E-17 72.3 5.3 53 2-56 21-73 (73)
16 cd04975 Ig4_SCFR_like Fourth i 99.4 1.5E-12 3.2E-17 77.0 5.9 55 2-57 39-100 (101)
17 cd05760 Ig2_PTK7 Second immuno 99.4 3.3E-12 7.1E-17 71.5 6.9 56 2-57 18-75 (77)
18 cd05848 Ig1_Contactin-5 First 99.4 2.2E-12 4.8E-17 74.9 6.2 54 2-55 39-93 (94)
19 cd05850 Ig1_Contactin-2 First 99.4 3.2E-12 7E-17 74.1 6.8 54 2-55 39-93 (94)
20 cd04978 Ig4_L1-NrCAM_like Four 99.3 3.9E-12 8.5E-17 70.0 6.2 54 2-56 21-75 (76)
21 cd04976 Ig2_VEGFR Second immun 99.3 2.6E-12 5.7E-17 71.1 5.4 52 2-56 18-69 (71)
22 cd05723 Ig4_Neogenin Fourth im 99.3 3.6E-12 7.8E-17 70.3 5.7 53 2-56 19-71 (71)
23 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 4.9E-12 1.1E-16 72.0 6.4 48 2-49 18-74 (81)
24 cd05748 Ig_Titin_like Immunogl 99.3 7.5E-12 1.6E-16 69.0 6.7 54 2-56 19-74 (74)
25 cd05865 Ig1_NCAM-1 First immun 99.3 4.4E-12 9.5E-17 74.3 6.0 53 4-56 39-95 (96)
26 cd05866 Ig1_NCAM-2 First immun 99.3 4.6E-12 9.9E-17 73.8 5.8 53 4-57 37-92 (92)
27 cd05876 Ig3_L1-CAM Third immun 99.3 4.5E-12 9.7E-17 69.9 5.5 53 2-56 18-70 (71)
28 cd05734 Ig7_DSCAM Seventh immu 99.3 6.4E-12 1.4E-16 70.2 6.1 41 16-56 39-79 (79)
29 cd05868 Ig4_NrCAM Fourth immun 99.3 6.3E-12 1.4E-16 70.3 6.0 55 2-57 21-76 (76)
30 cd05737 Ig_Myomesin_like_C C-t 99.3 7.7E-12 1.7E-16 71.9 6.4 54 2-56 36-92 (92)
31 cd05855 Ig_TrkB_d5 Fifth domai 99.3 7E-12 1.5E-16 71.6 5.8 53 2-55 18-77 (79)
32 cd04977 Ig1_NCAM-1_like First 99.3 9.2E-12 2E-16 71.9 6.2 53 4-56 37-92 (92)
33 cd05864 Ig2_VEGFR-2 Second imm 99.3 5.1E-12 1.1E-16 70.3 4.9 51 2-56 18-68 (70)
34 cd05730 Ig3_NCAM-1_like Third 99.3 1.3E-11 2.7E-16 70.9 6.5 55 2-57 38-93 (95)
35 cd05859 Ig4_PDGFR-alpha Fourth 99.3 8.2E-12 1.8E-16 73.7 5.8 55 2-57 38-100 (101)
36 cd05863 Ig2_VEGFR-3 Second imm 99.3 9.7E-12 2.1E-16 68.9 5.6 49 2-57 18-66 (67)
37 cd05851 Ig3_Contactin-1 Third 99.3 1.1E-11 2.4E-16 71.1 5.7 53 2-57 36-88 (88)
38 cd05746 Ig4_Peroxidasin Fourth 99.3 1.1E-11 2.4E-16 67.9 5.5 51 2-54 18-68 (69)
39 cd05849 Ig1_Contactin-1 First 99.3 1.6E-11 3.4E-16 71.4 6.4 53 2-55 39-92 (93)
40 cd05722 Ig1_Neogenin First imm 99.3 1.4E-11 3.1E-16 70.9 5.9 55 2-56 34-95 (95)
41 cd05763 Ig_1 Subgroup of the i 99.3 1.5E-11 3.2E-16 68.1 5.8 39 18-57 37-75 (75)
42 cd05725 Ig3_Robo Third immunog 99.3 1E-11 2.2E-16 67.7 5.0 52 2-56 18-69 (69)
43 cd07693 Ig1_Robo First immunog 99.3 1.9E-11 4.1E-16 69.5 6.3 55 2-56 36-99 (100)
44 cd05733 Ig6_L1-CAM_like Sixth 99.3 1.9E-11 4E-16 68.4 5.9 53 2-54 18-76 (77)
45 cd05874 Ig6_NrCAM Sixth immuno 99.3 2.4E-11 5.1E-16 68.3 6.3 53 2-54 18-76 (77)
46 cd04967 Ig1_Contactin First Ig 99.3 1.2E-11 2.6E-16 70.9 5.0 51 2-52 39-90 (91)
47 cd05726 Ig4_Robo Fhird immunog 99.3 3.1E-11 6.7E-16 69.0 6.8 43 16-59 42-84 (90)
48 cd05857 Ig2_FGFR Second immuno 99.3 2E-11 4.4E-16 68.5 5.8 54 2-56 29-85 (85)
49 cd05875 Ig6_hNeurofascin_like 99.3 2.7E-11 5.9E-16 68.0 6.3 53 2-54 18-76 (77)
50 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 2.4E-11 5.2E-16 69.6 6.1 54 2-56 30-86 (86)
51 cd04973 Ig1_FGFR First immunog 99.2 2.1E-11 4.5E-16 68.5 5.5 44 2-47 28-71 (79)
52 cd05764 Ig_2 Subgroup of the i 99.2 2.2E-11 4.9E-16 67.0 5.5 51 4-56 24-74 (74)
53 cd05728 Ig4_Contactin-2-like F 99.2 2.4E-11 5.2E-16 69.0 5.4 52 2-56 34-85 (85)
54 cd05743 Ig_Perlecan_D2_like Im 99.2 2.4E-11 5.3E-16 67.9 5.3 50 2-51 21-72 (78)
55 cd07702 Ig2_VEGFR-1 Second imm 99.2 2.4E-11 5.2E-16 68.2 5.1 54 2-56 18-72 (72)
56 cd05731 Ig3_L1-CAM_like Third 99.2 3.1E-11 6.7E-16 65.5 5.3 53 2-56 18-70 (71)
57 cd05773 Ig8_hNephrin_like Eigh 99.2 6E-11 1.3E-15 70.6 6.8 59 2-61 43-109 (109)
58 cd04968 Ig3_Contactin_like Thi 99.2 5E-11 1.1E-15 67.7 5.9 52 3-57 37-88 (88)
59 cd05736 Ig2_Follistatin_like S 99.2 1.3E-10 2.8E-15 64.3 7.2 55 2-57 18-74 (76)
60 cd05856 Ig2_FGFRL1-like Second 99.2 2.7E-11 5.9E-16 67.0 4.4 54 2-56 29-82 (82)
61 cd05757 Ig2_IL1R_like Second i 99.2 9.7E-11 2.1E-15 68.2 6.7 45 2-48 35-79 (92)
62 cd05756 Ig1_IL1R_like First im 99.2 7.6E-11 1.6E-15 68.7 5.1 54 2-56 39-94 (94)
63 cd05891 Ig_M-protein_C C-termi 99.1 1.8E-10 3.8E-15 66.5 6.3 47 2-48 36-85 (92)
64 PF07679 I-set: Immunoglobulin 99.1 1.9E-10 4E-15 64.7 5.7 54 2-56 35-90 (90)
65 cd05858 Ig3_FGFR-2 Third immun 99.1 1.8E-10 3.9E-15 65.9 5.7 35 21-56 55-89 (90)
66 KOG3513|consensus 99.1 1E-10 2.2E-15 90.5 5.6 63 3-66 461-523 (1051)
67 cd04974 Ig3_FGFR Third immunog 99.1 9.7E-11 2.1E-15 67.2 4.2 37 20-57 54-90 (90)
68 cd04972 Ig_TrkABC_d4 Fourth do 99.1 2.1E-10 4.5E-15 65.5 5.1 54 2-56 35-90 (90)
69 cd05750 Ig_Pro_neuregulin Immu 99.1 2E-10 4.2E-15 62.9 4.5 48 2-49 19-71 (75)
70 cd05747 Ig5_Titin_like M5, fif 99.1 4.6E-10 9.9E-15 64.3 6.1 46 2-47 38-85 (92)
71 cd05869 Ig5_NCAM-1 Fifth immun 99.1 4.7E-10 1E-14 64.9 5.9 35 21-56 63-97 (97)
72 cd05895 Ig_Pro_neuregulin-1 Im 99.0 4.6E-10 9.9E-15 62.1 4.5 47 2-48 19-71 (76)
73 cd05897 Ig2_IL1R2_like Second 99.0 1.2E-09 2.5E-14 64.4 6.3 45 2-46 35-80 (95)
74 cd05765 Ig_3 Subgroup of the i 99.0 6.5E-10 1.4E-14 61.6 4.8 38 18-56 44-81 (81)
75 cd04979 Ig_Semaphorin_C Immuno 99.0 1.1E-09 2.5E-14 62.2 5.6 56 2-57 30-87 (89)
76 cd05870 Ig5_NCAM-2 Fifth immun 99.0 5.5E-10 1.2E-14 64.7 4.2 36 20-56 63-98 (98)
77 cd05727 Ig2_Contactin-2-like S 99.0 4.3E-10 9.3E-15 66.5 3.8 46 2-47 39-86 (96)
78 cd05753 Ig2_FcgammaR_like Seco 99.0 5.5E-10 1.2E-14 63.5 3.9 38 19-56 46-83 (83)
79 cd05752 Ig1_FcgammaR_like Frst 99.0 5.6E-10 1.2E-14 63.1 3.9 34 19-56 45-78 (78)
80 KOG4222|consensus 99.0 6.7E-10 1.5E-14 86.5 5.3 65 2-66 167-232 (1281)
81 cd05732 Ig5_NCAM-1_like Fifth 99.0 1E-09 2.2E-14 62.7 4.5 35 21-56 62-96 (96)
82 cd05873 Ig_Sema4D_like Immunog 98.9 1.4E-09 2.9E-14 63.1 4.2 42 2-44 30-71 (87)
83 KOG3513|consensus 98.9 3.1E-09 6.8E-14 82.4 7.0 64 2-66 366-431 (1051)
84 cd05749 Ig2_Tyro3_like Second 98.9 2.2E-09 4.7E-14 61.2 4.3 48 2-55 34-81 (81)
85 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 4.1E-09 8.8E-14 58.1 5.2 48 2-54 21-68 (69)
86 cd05774 Ig_CEACAM_D1 First imm 98.9 5E-09 1.1E-13 62.5 5.5 44 13-56 62-105 (105)
87 cd05758 Ig5_KIRREL3-like Fifth 98.9 4.8E-09 1E-13 60.7 5.3 52 2-54 37-97 (98)
88 cd05742 Ig1_VEGFR_like First i 98.8 4.9E-09 1.1E-13 59.0 3.9 36 20-56 48-83 (84)
89 cd05729 Ig2_FGFR_like Second i 98.8 1.9E-08 4E-13 55.6 6.2 54 2-56 29-85 (85)
90 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 1.2E-08 2.7E-13 57.9 5.4 38 20-57 45-83 (84)
91 smart00408 IGc2 Immunoglobulin 98.8 2E-08 4.4E-13 51.5 5.1 41 3-45 23-63 (63)
92 PHA02826 IL-1 receptor-like pr 98.8 2.2E-08 4.8E-13 66.6 6.2 43 2-44 169-211 (227)
93 cd05862 Ig1_VEGFR First immuno 98.7 2.5E-08 5.4E-13 57.0 4.5 37 20-57 49-85 (86)
94 smart00410 IG_like Immunoglobu 98.7 8.1E-08 1.7E-12 51.5 6.3 51 5-56 33-85 (86)
95 smart00409 IG Immunoglobulin. 98.7 8.1E-08 1.7E-12 51.5 6.3 51 5-56 33-85 (86)
96 cd05882 Ig1_Necl-1 First (N-te 98.7 6.5E-08 1.4E-12 56.5 5.8 34 21-56 62-95 (95)
97 cd05754 Ig3_Perlecan_like Thir 98.7 2.9E-08 6.3E-13 55.9 4.0 31 19-49 50-80 (85)
98 cd05741 Ig_CEACAM_D1_like Firs 98.7 6.9E-08 1.5E-12 54.6 5.2 40 17-56 53-92 (92)
99 cd05871 Ig_Semaphorin_classIII 98.7 7.9E-08 1.7E-12 55.6 5.5 40 17-57 49-89 (91)
100 cd07701 Ig1_Necl-3 First (N-te 98.6 1.3E-07 2.8E-12 54.9 5.1 34 21-56 62-95 (95)
101 cd05775 Ig_SLAM-CD84_like_N N- 98.6 1.1E-07 2.4E-12 55.3 4.5 38 20-57 60-97 (97)
102 cd05771 IgC_Tapasin_R Tapasin- 98.6 8.4E-08 1.8E-12 58.6 4.0 40 22-62 2-41 (139)
103 cd05896 Ig1_IL1RAPL-1_like Fir 98.6 1.8E-07 3.8E-12 56.2 5.1 32 15-46 64-95 (104)
104 KOG4221|consensus 98.6 1.9E-07 4.1E-12 73.6 6.3 65 2-67 272-336 (1381)
105 PF13895 Ig_2: Immunoglobulin 98.5 1.2E-07 2.5E-12 51.5 3.5 35 22-56 46-80 (80)
106 cd05886 Ig1_Nectin-1_like Firs 98.5 3.1E-07 6.6E-12 54.2 5.2 38 19-57 61-99 (99)
107 cd05888 Ig1_Nectin-4_like Frst 98.5 6.2E-07 1.3E-11 52.4 6.4 36 20-56 63-99 (100)
108 PHA02826 IL-1 receptor-like pr 98.5 1.9E-07 4.1E-12 62.1 4.5 37 20-57 97-133 (227)
109 cd05845 Ig2_L1-CAM_like Second 98.5 1.5E-07 3.3E-12 55.5 3.6 35 12-46 49-84 (95)
110 PHA02785 IL-beta-binding prote 98.5 4.7E-07 1E-11 62.6 6.5 41 17-57 173-216 (326)
111 cd05713 Ig_MOG_like Immunoglob 98.5 2.7E-07 5.9E-12 53.2 4.5 35 21-56 65-99 (100)
112 cd05751 Ig1_LILRB1_like First 98.5 1.8E-07 4E-12 53.7 3.4 38 19-56 51-90 (91)
113 PF00047 ig: Immunoglobulin do 98.4 2E-07 4.3E-12 49.4 2.8 18 23-40 47-64 (64)
114 cd05885 Ig2_Necl-4 Second immu 98.4 5.7E-07 1.2E-11 51.5 4.6 54 2-55 20-79 (80)
115 cd05879 Ig_P0 Immunoglobulin ( 98.4 1E-06 2.2E-11 53.3 5.9 38 19-56 78-116 (116)
116 cd05759 Ig2_KIRREL3-like Secon 98.4 1.3E-06 2.8E-11 48.8 5.3 55 2-56 20-82 (82)
117 cd05718 Ig1_PVR_like First imm 98.4 1.1E-06 2.5E-11 50.1 5.1 37 19-56 60-97 (98)
118 PHA02785 IL-beta-binding prote 98.4 1.7E-06 3.6E-11 59.9 6.6 42 17-59 77-119 (326)
119 cd05717 Ig1_Necl-1-3_like Firs 98.3 9.9E-07 2.1E-11 50.5 4.4 35 20-56 61-95 (95)
120 cd05714 Ig_CSPGs_LP Immunoglob 98.3 1.6E-06 3.5E-11 50.5 4.8 38 19-57 66-103 (106)
121 cd05898 Ig5_KIRREL3 Fifth immu 98.3 1.2E-06 2.6E-11 51.7 4.2 33 21-54 64-97 (98)
122 KOG4221|consensus 98.3 2.2E-06 4.8E-11 67.8 6.1 59 3-62 176-234 (1381)
123 cd05887 Ig1_Nectin-3_like Firs 98.3 2.7E-06 5.9E-11 50.1 5.2 37 19-56 58-95 (96)
124 cd05877 Ig_LP_like Immunoglobu 98.2 2.1E-06 4.6E-11 50.0 4.3 36 21-57 68-103 (106)
125 PF13927 Ig_3: Immunoglobulin 98.2 1.1E-06 2.3E-11 46.9 2.7 26 17-42 50-75 (75)
126 cd05715 Ig_P0-like Immunoglobu 98.2 2.8E-06 6.2E-11 50.5 4.5 36 21-56 80-116 (116)
127 cd05880 Ig_EVA1 Immunoglobulin 98.2 2.8E-06 6E-11 50.9 4.3 37 20-56 78-115 (115)
128 KOG4194|consensus 98.2 2.9E-06 6.2E-11 64.1 5.1 50 11-61 659-708 (873)
129 cd05872 Ig_Sema4B_like Immunog 98.2 5.9E-06 1.3E-10 47.7 5.0 42 2-46 30-71 (85)
130 PHA02633 hypothetical protein; 98.1 9.3E-06 2E-10 44.8 5.3 41 19-60 16-56 (63)
131 cd05846 Ig1_MRC-OX-2_like Firs 98.1 6E-06 1.3E-10 47.7 4.6 38 19-57 59-97 (97)
132 cd05900 Ig_Aggrecan Immunoglob 98.1 9E-06 2E-10 48.9 5.1 38 19-57 72-109 (112)
133 cd05881 Ig1_Necl-2 First (N-te 98.1 1.5E-05 3.2E-10 46.8 5.7 34 10-43 48-84 (95)
134 cd07690 Ig1_CD4 First immunogl 98.1 1.8E-06 3.8E-11 50.6 1.8 26 22-47 66-91 (94)
135 cd05878 Ig_Aggrecan_like Immun 98.1 1.1E-05 2.3E-10 48.0 5.0 37 20-57 71-107 (110)
136 PF07686 V-set: Immunoglobulin 98.1 1.2E-05 2.6E-10 45.9 4.9 35 22-56 80-114 (114)
137 cd05889 Ig1_DNAM-1_like First 97.9 3.5E-05 7.7E-10 45.3 5.3 28 19-46 58-86 (96)
138 cd05902 Ig_Neurocan Immunoglob 97.9 2.1E-05 4.7E-10 47.2 4.3 37 20-57 71-107 (110)
139 cd00099 IgV Immunoglobulin var 97.9 9.8E-06 2.1E-10 46.5 2.6 24 22-45 68-91 (105)
140 cd04983 IgV_TCR_alpha_like Imm 97.9 2.1E-05 4.4E-10 45.6 3.7 24 21-44 70-93 (109)
141 KOG4194|consensus 97.9 2.3E-05 5.1E-10 59.3 4.8 42 21-62 574-615 (873)
142 cd05901 Ig_Versican Immunoglob 97.9 5E-05 1.1E-09 46.3 5.4 38 19-57 77-114 (117)
143 cd05860 Ig4_SCFR Fourth immuno 97.7 0.00011 2.3E-09 43.9 4.5 36 21-57 65-100 (101)
144 cd04984 IgV_L_lambda Immunoglo 97.6 7.5E-05 1.6E-09 42.9 3.6 22 22-43 64-85 (98)
145 cd04980 IgV_L_kappa Immunoglob 97.6 5.6E-05 1.2E-09 44.0 2.9 22 22-43 72-93 (106)
146 cd05883 Ig2_Necl-2 Second immu 97.6 0.00035 7.6E-09 40.1 5.9 58 2-59 20-82 (82)
147 cd05899 IgV_TCR_beta Immunoglo 97.5 0.00013 2.8E-09 42.7 3.3 24 21-44 72-95 (110)
148 cd05716 Ig_pIgR Immunoglobulin 97.5 0.00012 2.6E-09 41.9 3.1 23 22-44 65-87 (98)
149 PHA02987 Ig domain OX-2-like p 97.4 0.00059 1.3E-08 44.8 6.1 40 19-58 83-123 (189)
150 cd05720 Ig_CD8_alpha Immunoglo 97.4 0.00013 2.7E-09 42.8 2.5 33 22-64 70-102 (104)
151 cd07700 IgV_CD8_beta Immunoglo 97.4 0.00016 3.4E-09 42.4 2.8 22 22-43 73-94 (107)
152 PF11465 Receptor_2B4: Natural 97.4 0.00085 1.8E-08 40.6 5.7 56 2-57 48-107 (108)
153 KOG4222|consensus 97.3 0.00025 5.5E-09 56.3 3.9 53 13-66 270-322 (1281)
154 KOG1480|consensus 97.2 0.00022 4.7E-09 54.9 2.5 57 2-59 165-221 (909)
155 cd07691 Ig_CD3_gamma_delta Imm 97.2 0.00058 1.3E-08 38.3 3.4 36 19-59 31-66 (69)
156 smart00406 IGv Immunoglobulin 97.2 0.0002 4.3E-09 38.7 1.4 19 21-39 62-80 (81)
157 cd05711 Ig_FcalphaRI Immunoglo 97.2 0.00081 1.7E-08 38.8 4.1 35 22-56 56-94 (94)
158 cd07706 IgV_TCR_delta Immunogl 97.1 0.00067 1.4E-08 40.0 3.4 22 22-43 73-94 (116)
159 cd04982 IgV_TCR_gamma Immunogl 97.1 0.00041 9E-09 40.8 2.2 21 22-42 78-98 (116)
160 cd00096 Ig Immunoglobulin doma 97.0 0.00079 1.7E-08 33.5 2.8 26 19-44 41-66 (74)
161 PF07354 Sp38: Zona-pellucida- 97.0 0.0022 4.7E-08 44.2 5.2 39 4-43 21-59 (271)
162 cd07705 Ig2_Necl-1 Second immu 96.9 0.0047 1E-07 34.8 5.4 55 2-56 20-83 (83)
163 cd05761 Ig2_Necl-1-4_like Seco 96.7 0.0061 1.3E-07 34.1 5.1 45 2-47 20-71 (82)
164 cd05712 Ig_Siglec_N Immunoglob 96.6 0.0018 3.9E-08 38.6 2.5 23 21-43 80-102 (119)
165 cd00098 IgC Immunoglobulin Con 96.4 0.006 1.3E-07 34.2 3.6 44 2-45 35-86 (95)
166 cd04981 IgV_H Immunoglobulin ( 96.2 0.0066 1.4E-07 36.2 3.0 21 22-42 77-97 (117)
167 cd05884 Ig2_Necl-3 Second immu 95.3 0.082 1.8E-06 29.8 5.1 45 2-46 20-71 (83)
168 KOG3515|consensus 95.2 0.0087 1.9E-07 46.1 1.1 57 2-61 43-99 (741)
169 PHA03376 BARF1; Provisional 94.7 0.064 1.4E-06 35.9 4.1 23 22-44 88-110 (221)
170 PHA03282 envelope glycoprotein 94.1 0.21 4.6E-06 37.2 6.0 44 16-59 119-163 (540)
171 cd05721 IgV_CTLA-4 Immunoglobu 93.5 0.085 1.8E-06 32.2 2.7 19 22-40 75-93 (115)
172 cd07692 Ig_CD3_epsilon Immunog 92.0 0.19 4.1E-06 27.8 2.5 22 21-43 35-56 (65)
173 cd05755 Ig2_ICAM-1_like Second 91.6 0.31 6.7E-06 28.8 3.3 25 21-46 62-87 (100)
174 PHA03283 envelope glycoprotein 91.6 0.58 1.3E-05 35.2 5.3 44 20-64 133-176 (542)
175 smart00407 IGc1 Immunoglobulin 91.3 0.75 1.6E-05 25.0 4.5 23 22-44 49-71 (75)
176 PF02480 Herpes_gE: Alphaherpe 91.2 0.062 1.3E-06 39.2 0.0 41 19-59 87-127 (439)
177 KOG3515|consensus 90.8 0.34 7.5E-06 37.6 3.6 58 4-62 439-498 (741)
178 cd07694 Ig2_CD4 Second immunog 90.7 1.1 2.3E-05 26.2 4.9 25 19-43 49-73 (88)
179 PF05790 C2-set: Immunoglobuli 90.4 2 4.4E-05 24.3 6.5 42 15-56 37-78 (80)
180 KOG4597|consensus 89.4 0.42 9.2E-06 35.7 3.1 40 19-59 255-294 (560)
181 PHA02982 hypothetical protein; 89.2 1 2.2E-05 30.7 4.5 32 18-49 97-128 (251)
182 PF08204 V-set_CD47: CD47 immu 89.1 0.26 5.6E-06 30.7 1.5 33 22-56 87-119 (130)
183 PHA03286 envelope glycoprotein 88.5 1.5 3.3E-05 32.6 5.3 37 21-57 127-163 (492)
184 cd07703 Ig2_Nectin-2_like Seco 86.6 0.94 2E-05 26.3 2.8 34 22-55 60-94 (95)
185 cd05719 Ig2_PVR_like Second im 86.6 1.1 2.4E-05 25.9 3.1 34 22-55 60-94 (95)
186 cd05770 IgC_beta2m Class I maj 85.5 1.9 4E-05 24.9 3.7 41 2-43 37-82 (93)
187 cd05772 IgC_SIRP Signal-regula 85.0 4.9 0.00011 23.8 5.4 41 2-44 43-92 (111)
188 cd07698 IgC_MHC_I_alpha3 Class 83.2 2.4 5.3E-05 23.8 3.5 18 27-44 66-83 (93)
189 PHA03042 CD47-like protein; Pr 81.8 4.6 0.0001 28.2 4.9 25 22-47 72-96 (286)
190 cd07697 IgC_TCR_gamma T cell r 80.9 5.1 0.00011 23.2 4.3 10 35-44 76-85 (96)
191 PHA02914 Immunoglobulin-like d 80.2 4.5 9.7E-05 30.0 4.6 36 22-57 82-117 (500)
192 cd07699 IgC_L Immunoglobulin C 76.5 4 8.7E-05 23.5 3.0 43 2-44 39-89 (100)
193 cd05771 IgC_Tapasin_R Tapasin- 75.8 4.4 9.5E-05 24.2 3.1 24 22-45 109-132 (139)
194 cd05767 IgC_MHC_II_alpha Class 75.3 9.4 0.0002 21.9 4.3 14 30-43 70-83 (94)
195 KOG3611|consensus 75.1 4.1 8.9E-05 31.8 3.4 40 19-58 610-649 (737)
196 PF08329 ChitinaseA_N: Chitina 73.2 20 0.00043 22.4 5.8 36 31-66 80-117 (133)
197 PF07654 C1-set: Immunoglobuli 71.2 15 0.00031 20.0 5.1 21 22-45 58-78 (83)
198 PHA02914 Immunoglobulin-like d 71.0 2.7 5.8E-05 31.1 1.5 26 18-43 343-368 (500)
199 cd05766 IgC_MHC_II_beta Class 70.7 15 0.00032 20.9 4.4 16 29-44 68-83 (94)
200 COG5475 Uncharacterized small 70.7 7.7 0.00017 21.0 2.9 25 22-48 19-43 (60)
201 PHA03281 envelope glycoprotein 70.5 15 0.00032 28.3 5.3 41 19-59 296-336 (642)
202 PHA03286 envelope glycoprotein 69.8 6.4 0.00014 29.4 3.2 28 15-42 300-328 (492)
203 PHA03269 envelope glycoprotein 69.7 16 0.00034 27.8 5.3 46 22-67 290-339 (566)
204 cd07689 Ig2_VCAM-1 Second immu 62.5 9 0.0002 22.7 2.4 23 22-45 64-87 (99)
205 PHA03282 envelope glycoprotein 61.8 7.8 0.00017 29.2 2.4 21 22-42 334-354 (540)
206 PHA03270 envelope glycoprotein 61.5 35 0.00075 25.5 5.6 47 21-67 182-231 (466)
207 PF02480 Herpes_gE: Alphaherpe 60.5 7.6 0.00017 28.5 2.2 21 22-42 270-290 (439)
208 PF08205 C2-set_2: CD80-like C 59.2 18 0.00039 19.6 3.2 25 22-46 62-86 (89)
209 PHA03271 envelope glycoprotein 59.0 53 0.0011 24.6 6.2 55 14-68 195-258 (490)
210 KOG0200|consensus 57.8 12 0.00026 28.2 2.9 27 16-42 8-34 (609)
211 PHA03189 UL14 tegument protein 56.9 12 0.00027 26.7 2.6 23 22-45 135-157 (348)
212 smart00736 CADG Dystroglycan-t 56.3 35 0.00076 19.3 5.5 43 17-59 49-94 (97)
213 PHA03240 envelope glycoprotein 55.0 12 0.00027 25.5 2.3 29 17-46 101-130 (258)
214 PF06214 SLAM: Signaling lymph 54.6 14 0.00031 22.7 2.4 29 11-39 93-121 (126)
215 PF01688 Herpes_gI: Alphaherpe 50.6 57 0.0012 21.0 4.8 38 18-56 120-158 (161)
216 cd07704 Ig2_Nectin-3-4_like Se 50.5 24 0.00051 20.7 2.8 34 22-55 62-96 (97)
217 PHA03291 envelope glycoprotein 48.4 87 0.0019 23.0 5.8 38 22-60 130-168 (401)
218 PHA03283 envelope glycoprotein 47.8 20 0.00044 27.2 2.7 21 21-41 315-335 (542)
219 PHA03273 envelope glycoprotein 47.6 66 0.0014 24.2 5.2 46 22-67 199-247 (486)
220 PHA02786 uncharacterized prot 43.3 76 0.0016 20.5 4.5 42 25-66 41-82 (192)
221 PF11327 DUF3129: Protein of u 42.2 56 0.0012 21.2 3.9 23 19-41 89-113 (184)
222 PF15418 DUF4625: Domain of un 41.5 50 0.0011 20.3 3.4 28 29-56 102-131 (132)
223 cd05847 IgC_CH2_IgE CH2 domain 40.4 34 0.00073 19.5 2.4 23 22-44 64-86 (94)
224 PHA03281 envelope glycoprotein 39.3 36 0.00078 26.3 2.9 21 22-42 476-496 (642)
225 COG2086 FixA Electron transfer 37.5 96 0.0021 21.3 4.6 41 18-68 151-191 (260)
226 cd02670 Peptidase_C19N A subfa 36.6 53 0.0011 22.1 3.2 23 23-45 172-194 (241)
227 PF00443 UCH: Ubiquitin carbox 36.5 66 0.0014 20.1 3.5 22 22-44 215-236 (269)
228 KOG3486|consensus 35.5 20 0.00042 20.7 0.8 21 37-57 16-37 (83)
229 cd02668 Peptidase_C19L A subfa 35.3 68 0.0015 21.8 3.6 20 25-44 253-272 (324)
230 cd02664 Peptidase_C19H A subfa 31.5 62 0.0013 22.2 2.9 20 25-44 250-269 (327)
231 PHA03290 envelope glycoprotein 31.4 1.9E+02 0.004 21.1 5.3 36 22-58 130-165 (357)
232 PF11088 RL11D: Glycoprotein e 30.9 30 0.00064 20.6 1.1 22 20-41 59-80 (98)
233 cd05768 IgC_CH4 CH4 domain (fo 30.8 44 0.00096 19.2 1.9 22 23-44 70-91 (102)
234 COG4706 Predicted 3-hydroxylac 30.0 75 0.0016 20.5 2.9 32 33-65 123-154 (161)
235 PF01034 Syndecan: Syndecan do 29.4 17 0.00037 20.0 -0.1 17 22-38 30-46 (64)
236 PHA03289 envelope glycoprotein 29.0 2E+02 0.0043 20.9 5.1 35 22-57 123-157 (352)
237 PF02440 Adeno_E3_CR1: Adenovi 28.1 42 0.00092 18.2 1.3 16 19-34 48-63 (63)
238 cd02662 Peptidase_C19F A subfa 27.3 64 0.0014 21.1 2.3 13 31-43 175-187 (240)
239 cd02182 GH16_Strep_laminarinas 27.0 2E+02 0.0042 19.2 6.2 29 16-45 48-77 (259)
240 PF09697 Porph_ging: Protein o 26.1 1.3E+02 0.0027 16.6 3.1 14 50-63 40-53 (70)
241 PF15660 Imm49: Immunity prote 25.8 51 0.0011 18.4 1.4 26 38-68 34-59 (84)
242 KOG1865|consensus 24.9 79 0.0017 24.2 2.7 17 29-45 363-379 (545)
243 PF09134 Invasin_D3: Invasin, 24.4 54 0.0012 19.5 1.4 37 4-41 33-69 (99)
244 cd02661 Peptidase_C19E A subfa 23.9 1.1E+02 0.0024 20.0 3.0 21 24-44 254-274 (304)
245 PHA02935 Hypothetical protein; 23.5 66 0.0014 22.1 1.9 37 22-58 103-139 (349)
246 cd02257 Peptidase_C19 Peptidas 22.4 1.2E+02 0.0027 18.4 2.9 22 23-44 198-219 (255)
247 cd00413 Glyco_hydrolase_16 gly 22.3 2.1E+02 0.0045 17.8 5.2 28 16-43 32-60 (210)
248 cd02657 Peptidase_C19A A subfa 22.2 1.3E+02 0.0029 19.9 3.2 16 29-44 252-267 (305)
249 smart00810 Alpha-amyl_C2 Alpha 22.0 1.2E+02 0.0027 16.3 2.4 31 19-62 7-37 (61)
250 cd07696 IgC_CH3 CH3 domain (th 20.7 89 0.0019 17.8 1.8 22 23-44 65-86 (96)
251 cd02667 Peptidase_C19K A subfa 20.4 1E+02 0.0023 20.5 2.4 20 23-43 207-226 (279)
252 PRK15372 pathogenicity island 20.2 82 0.0018 22.1 1.8 27 12-38 64-90 (292)
253 cd00501 Peptidase_C15 Pyroglut 20.0 51 0.0011 21.1 0.8 12 29-40 133-144 (194)
254 PF04004 Leo1: Leo1-like prote 20.0 1E+02 0.0022 19.6 2.1 23 4-26 58-80 (171)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.53 E-value=5.3e-14 Score=82.43 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=47.9
Q ss_pred cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCC
Q psy7035 2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIP 63 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~ 63 (70)
+|||++|..+.+..+.. ...+|+|.++.++|+|.|+|.|+|..|+... .+.|.|...|+.|
T Consensus 35 ~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~-~~~l~V~~~P~pP 97 (98)
T cd05762 35 MKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA-QVNLTVVDKPDPP 97 (98)
T ss_pred EECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE-EEEEEEecCCCCC
Confidence 58899997554433332 3468999999999999999999999999766 7999999555444
No 2
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.51 E-value=6e-14 Score=81.32 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=45.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||.++..+ +..+...+++|+|.+++++|+|.|+|.|.|..|...|.++.|.|.
T Consensus 37 ~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V~ 91 (91)
T cd05740 37 VNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91 (91)
T ss_pred EECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEeC
Confidence 5788877543 333344567999999999999999999999999999999999984
No 3
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.49 E-value=8.4e-14 Score=80.52 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=45.9
Q ss_pred cccCeEcCc--CccceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035 2 SFSNVQLYN--NISAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL 60 (70)
Q Consensus 2 ~~ng~~l~~--~~~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p 60 (70)
+|||++|.. +..+..+. ++++|+|.+++..|+|.|+|.|+|.+++. +.++.|.|+.+|
T Consensus 22 ~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~~pP 85 (85)
T cd05853 22 SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVRGPP 85 (85)
T ss_pred EECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEecCC
Confidence 589999963 33343332 46789999999999999999999999986 557899998544
No 4
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.48 E-value=2.1e-13 Score=78.34 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=44.5
Q ss_pred cccCeEcCcCccce-EEe---c---CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 2 SFSNVQLYNNISAG-VIV---S---NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 2 ~~ng~~l~~~~~~~-~~~---~---~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
+|||+++..+..+. +.. . ..+|.|.+++++|+|.|+|.|+|..|... ..+.|.|...|+.
T Consensus 21 ~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~~L~V~~~P~~ 87 (88)
T cd05735 21 EKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GIIQLTVQEPPDP 87 (88)
T ss_pred eeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEEEEEEeCCCCC
Confidence 46777775443333 221 1 15799999999999999999999999865 4789999955553
No 5
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.48 E-value=1.5e-13 Score=77.24 Aligned_cols=55 Identities=22% Similarity=0.345 Sum_probs=46.1
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++.....+..+..+++|.|.+++++|+|.|+|.|.|..|...+..+.|.|
T Consensus 32 ~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 32 RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 5788888764444445567899999999999999999999999999998888875
No 6
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.47 E-value=1.7e-13 Score=76.54 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=42.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++..+. +..+..+++|.|.+++++|+|.|+|.|+|..|+..+ .+.|.|
T Consensus 21 ~k~~~~l~~~~-r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~~ 73 (73)
T cd05852 21 SKGTELLVNNS-RISIWDDGSLEILNITKLDEGSYTCFAENNRGKANS-TGVLSV 73 (73)
T ss_pred EeCCEecccCC-CEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeE-EEEEEC
Confidence 57787776543 445568899999999999999999999999998765 566654
No 7
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=1.4e-13 Score=78.00 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=44.4
Q ss_pred cccCeEcCcCcc------ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035 2 SFSNVQLYNNIS------AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL 60 (70)
Q Consensus 2 ~~ng~~l~~~~~------~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p 60 (70)
+|||++|..... ......+++|.|.+++.+|+|.|+|.|+|..|.. +..+.|.|..+|
T Consensus 22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~pP 85 (85)
T cd04970 22 SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVRGPP 85 (85)
T ss_pred EECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEECCC
Confidence 468888853221 1122357899999999999999999999999986 558899998554
No 8
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=1.7e-13 Score=78.32 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=43.3
Q ss_pred cccCeEcCcCc--cceEE----ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 2 SFSNVQLYNNI--SAGVI----VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 2 ~~ng~~l~~~~--~~~~~----~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
+|||++|.... .+..+ ...++|+|.+++..|+|.|+|.|.|.+|+..+ .+.|.|...
T Consensus 22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~-~~~L~V~~~ 84 (85)
T cd05854 22 SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA-SATLVVRGP 84 (85)
T ss_pred EECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE-EEEEEEECC
Confidence 57888885421 12111 13579999999999999999999999998655 789999843
No 9
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.46 E-value=2.1e-13 Score=76.81 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=41.3
Q ss_pred cccCeEcCcCccce-EEecC-C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAG-VIVSN-Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~-~~~~~-~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||++|..+..+. +..++ + +|.|.+++++|+|.|+|.|.|..|+..+ .+.|.|
T Consensus 18 ~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~-~a~L~V 75 (75)
T cd05892 18 KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC-HARLDV 75 (75)
T ss_pred EECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE-EEEEeC
Confidence 58899887543333 33333 3 8999999999999999999999998766 567765
No 10
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.45 E-value=3.1e-13 Score=75.08 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=46.3
Q ss_pred cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||.++.. .+.+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 18 ~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 18 FKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred EECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 578888763 23344456788999999999999999999999999999999999873
No 11
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.43 E-value=4e-13 Score=75.47 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=41.1
Q ss_pred cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++..+..+.....+ + +|.|.+++.+|+|.|+|.|.|..|+..+ .+.|.|
T Consensus 18 ~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V 75 (75)
T cd05893 18 KKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSC-TARLDV 75 (75)
T ss_pred EECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE-EEEEeC
Confidence 5788888754433333222 2 6999999999999999999999998755 677765
No 12
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.42 E-value=7.5e-13 Score=73.96 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=41.1
Q ss_pred cccCeEcCcCccceEEecC--C--EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSN--Q--SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~--~--tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++..+..+..+..+ + +|.|.+++++|+|.|+|.|.|..|+..+ .+.|.|
T Consensus 18 ~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v 75 (75)
T cd05744 18 KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC-NARLDV 75 (75)
T ss_pred EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE-EEEEeC
Confidence 5889988754333333222 2 6999999999999999999999998755 577765
No 13
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.42 E-value=9e-13 Score=73.35 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=43.3
Q ss_pred cccCeEcCcCc-cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNI-SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++.... .......+++|.|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus 21 ~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 75 (76)
T cd05867 21 SINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLA-NAHVHV 75 (76)
T ss_pred EECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEE-EEEEEE
Confidence 57888886432 2234567889999999999999999999999998755 677776
No 14
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=5.5e-13 Score=73.89 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=42.7
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||.++..+. +..+..+++|+|.+++++|+|.|+|.|.|..|...+ .+.|.|
T Consensus 22 ~k~g~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~L~V 74 (74)
T cd05745 22 TKGGSQLSVDR-RHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRT-VAQLTV 74 (74)
T ss_pred EECCEECCCCC-CeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE-EEEEeC
Confidence 47888886553 344567889999999999999999999999998655 677765
No 15
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=1.1e-12 Score=72.33 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=42.1
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|+++++..+.+ ..+..+++|.|.+++++|+|.|+|.|.|..|...+ ++.|.|
T Consensus 21 ~k~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 73 (73)
T cd04969 21 SKGTELLTNSSR-ICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS-TGSLSV 73 (73)
T ss_pred EECCEEcccCCC-EEECCCCeEEEccCChhHCEEEEEEEECCCCceEE-EEEEEC
Confidence 467787765543 34557789999999999999999999999998655 566664
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.38 E-value=1.5e-12 Score=77.03 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=43.3
Q ss_pred cccCeEcCcCccceEEec-------CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVS-------NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~-------~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||.+|..+....+... ..+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|+
T Consensus 39 ~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~ 100 (101)
T cd04975 39 TYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN 100 (101)
T ss_pred EeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence 689999986544333322 3689999999999999999999999974 557888876
No 17
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.37 E-value=3.3e-12 Score=71.50 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=43.7
Q ss_pred cccCeEcCcCccce-EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc-eeEEEEEE
Q psy7035 2 SFSNVQLYNNISAG-VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS-NAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~-~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s-~~~~L~V~ 57 (70)
+|||+++....... +...+++|+|.+++++|+|.|+|.|.|..|...+ ..++|.|.
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 18 FRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred EECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 57899886544333 3334579999999999999999999999998754 46788775
No 18
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.37 E-value=2.2e-12 Score=74.86 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=43.7
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~ 55 (70)
+|||.+|.........+.+++|.|.++. ++|+|.|+|.|+|.+|+..|..+.|.
T Consensus 39 ~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l~ 93 (94)
T cd05848 39 LRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALLQ 93 (94)
T ss_pred EECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEEe
Confidence 5789988644333455678899999985 69999999999999999988887764
No 19
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.37 E-value=3.2e-12 Score=74.07 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=43.5
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~ 55 (70)
++||+++.........+.+++|.|.++. ..|+|.|+|.|+|..|...|..+.|.
T Consensus 39 ~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 39 KMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred EECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 5788888644333445568899999875 59999999999999999999888774
No 20
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=3.9e-12 Score=70.02 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=42.9
Q ss_pred cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++||+++..... ......+++|+|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus 21 ~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~V 75 (76)
T cd04978 21 RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA-NAFVHV 75 (76)
T ss_pred EECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE-eEEEEE
Confidence 478888865432 234567889999999999999999999999998654 677776
No 21
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.35 E-value=2.6e-12 Score=71.08 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=40.9
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++..+. .....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus 18 ~k~g~~l~~~~--~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 18 YKNGKLISEKN--RTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred EECCEECCCCC--EEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 58899987653 345677899999999999999999999999874 33455554
No 22
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=3.6e-12 Score=70.26 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=41.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||.++....+ ..+..+++|.|.+++++|+|.|+|.|+|..|+..+ .+.|.|
T Consensus 19 ~k~g~~~~~~~~-~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~L~V 71 (71)
T cd05723 19 VKNGDMVIPSDY-FKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA-SAQLII 71 (71)
T ss_pred EECCeECCCCCC-EEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEE-EEEEEC
Confidence 478888765443 34456788999999999999999999999998654 566654
No 23
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.34 E-value=4.9e-12 Score=71.99 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=37.2
Q ss_pred cccCeEcCcCccceEE---------ecCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035 2 SFSNVQLYNNISAGVI---------VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~---------~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s 49 (70)
+|||++|..+...... ...++|+|.+++++|+|.|+|.|+|..|+..+
T Consensus 18 ~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 18 YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 6899999765433222 12457999999999999999999999998644
No 24
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.33 E-value=7.5e-12 Score=68.98 Aligned_cols=54 Identities=26% Similarity=0.262 Sum_probs=41.2
Q ss_pred cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||.++..+.+..+.. ...+|.|.+++++|+|.|+|.|+|..|.. +..+.|.|
T Consensus 19 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 19 SKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred EECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 57888886555544443 24589999999999999999999999984 44566654
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.33 E-value=4.4e-12 Score=74.29 Aligned_cols=53 Identities=25% Similarity=0.306 Sum_probs=38.5
Q ss_pred cCeEcCcCccceEEecC----CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 4 SNVQLYNNISAGVIVSN----QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~----~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
||+++..+.++.....+ ++|+|.+++.+|+|.|+|.|+|..|...+.++.|.|
T Consensus 39 ~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 39 NGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 67766553333322222 589999999999999999999998544555777776
No 26
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.33 E-value=4.6e-12 Score=73.83 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=42.2
Q ss_pred cCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 4 SNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
||+++....+ ..+..++ +|+|.+++.+|+|.|+|.|+|..|.....++.|.|+
T Consensus 37 ~g~~~~~~~r-~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~~ 92 (92)
T cd05866 37 QGEKIVSSQR-VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 92 (92)
T ss_pred CCeEecCCCC-EEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEEC
Confidence 5677755433 3334444 899999999999999999999999988888888873
No 27
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=4.5e-12 Score=69.89 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=41.0
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|+|.++..+. ......+++|+|.+++.+|+|.|+|.|+|..|... ..+.|.|
T Consensus 18 ~k~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05876 18 DRIDGPLSPNR-TKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV 70 (71)
T ss_pred EECCcCCCCCc-eeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence 36676665432 33445778999999999999999999999999854 4677776
No 28
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.32 E-value=6.4e-12 Score=70.24 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=37.3
Q ss_pred EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
....+++|.|.+++++|+|.|+|.|+|..|...+..+.|+|
T Consensus 39 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 39 QLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred EEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 34578999999999999999999999999999999998875
No 29
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.32 E-value=6.3e-12 Score=70.26 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=43.2
Q ss_pred cccCeEcCcCcc-ceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNIS-AGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||+++..... .....++++|.|.+++++|+|.|+|.|+|..|...+ .+.|.|+
T Consensus 21 ~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~v~ 76 (76)
T cd05868 21 LTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLA-NAFVNVL 76 (76)
T ss_pred EECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE-EEEEEeC
Confidence 578998864322 223456779999999999999999999999998755 6788773
No 30
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.32 E-value=7.7e-12 Score=71.87 Aligned_cols=54 Identities=22% Similarity=0.179 Sum_probs=40.6
Q ss_pred cccCeEcCcCccceEEecC---CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSN---QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~---~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++...++..+...+ .+|+|.+++++|+|.|+|.|+|..|+... .+.|.|
T Consensus 36 ~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~v~v 92 (92)
T cd05737 36 LKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV-DVTVSV 92 (92)
T ss_pred EECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE-EEEEeC
Confidence 5788888765554444332 37999999999999999999999997644 455543
No 31
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.31 E-value=7e-12 Score=71.58 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=39.2
Q ss_pred cccCeEcCcCccceE--E-----ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035 2 SFSNVQLYNNISAGV--I-----VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~--~-----~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~ 55 (70)
+|||++|..+.+... . ...++|.|.+++++|+|.|+|.|+|..|++.. .+.++
T Consensus 18 ~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~-~~~~~ 77 (79)
T cd05855 18 FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEK-NVSAH 77 (79)
T ss_pred EECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccce-EEEee
Confidence 689999976543221 1 12358999999999999999999999997543 44443
No 32
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.30 E-value=9.2e-12 Score=71.89 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=39.8
Q ss_pred cCeEcCcCccceEEecC---CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 4 SNVQLYNNISAGVIVSN---QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~---~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
||+++....+..+...+ .+|+|.+++.+|+|.|+|.|+|..|...+.++.|+|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 37 NGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred CCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 56666554443333222 389999999999999999999998877777787765
No 33
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.30 E-value=5.1e-12 Score=70.32 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=39.0
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||++|..+.+ ...+.+|.|.+++.+|+|.|+|.|.|..|.... ..++++
T Consensus 18 ~k~g~~l~~~~~---~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~-~~t~~l 68 (70)
T cd05864 18 YKNGQLIVLNHT---FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ-RHTFQL 68 (70)
T ss_pred EECCEECCCCCE---EccCCEEEECcCCHHHCEEEEEEEEECCCceee-EEEEEE
Confidence 689999875432 234568999999999999999999999997644 334443
No 34
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.30 E-value=1.3e-11 Score=70.95 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=42.1
Q ss_pred cccCeEcCcCccce-EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAG-VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~-~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
++||+++.....+. +...+.+|+|.+++++|+|.|+|.|+|..|.. +..+.|.|.
T Consensus 38 ~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~ 93 (95)
T cd05730 38 TKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHLKVF 93 (95)
T ss_pred EECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence 46788886542222 22344579999999999999999999999986 457888886
No 35
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.29 E-value=8.2e-12 Score=73.72 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=42.2
Q ss_pred cccCeEcCcCccceEEe--------cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIV--------SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~--------~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||++|..+.+..... ...+|+|.+++++|+|.|+|.|+|..|+. +.++.|.|+
T Consensus 38 ~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~ 100 (101)
T cd05859 38 LKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ 100 (101)
T ss_pred EECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence 68999997654332211 13589999999999999999999999985 446778775
No 36
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.29 E-value=9.7e-12 Score=68.89 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=38.3
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||++|... ...++|.|.+++.+|+|.|+|.|+|..|.. +..+.|+|.
T Consensus 18 ~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l~ 66 (67)
T cd05863 18 YKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLELI 66 (67)
T ss_pred EECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEEE
Confidence 5888888632 145799999999999999999999999974 335566553
No 37
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=1.1e-11 Score=71.05 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=40.8
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|+|.++.... .+...+++|.|.+++++|+|.|+|.|.|..|.... .+.|.|+
T Consensus 36 ~k~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~~~l~V~ 88 (88)
T cd05851 36 RKILEPMPATA--EISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKH-QARVYVQ 88 (88)
T ss_pred EECCcCCCCCC--EEecCCCEEEECcCChhhCEEEEEEEEcCCCceEE-EEEEEEC
Confidence 45666665432 34456789999999999999999999999998644 6777763
No 38
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.28 E-value=1.1e-11 Score=67.85 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=39.7
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
+|||.++....+ ..+..+++|.|.+++.+|+|.|+|.|.|..|.... .+.|
T Consensus 18 ~k~g~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~L 68 (69)
T cd05746 18 NKDGVQVTESGK-FHISPEGYLAIRDVGVADQGRYECVARNTIGYASV-SMVL 68 (69)
T ss_pred EECCEECCCCCC-EEECCCCEEEECcCChhhCEEEEEEEECCCCcEEE-EEEe
Confidence 478888765433 33446789999999999999999999999998643 4544
No 39
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=1.6e-11 Score=71.38 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=42.5
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~ 55 (70)
+|||+++.....+ ..+.+++|.|.++. ++|+|.|+|.|+|..|...|..++|.
T Consensus 39 ~k~~~~i~~~~~~-~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 39 RKNNLDIDLTNDR-YSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred EECCEEccCCCCe-EEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 5778887543333 34568999999985 59999999999999999999888875
No 40
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=1.4e-11 Score=70.92 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=44.9
Q ss_pred cccCeEcCcCcc-ceEEecCCEEEEccc-----CCCCCeeeEEEeEeC-CCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNIS-AGVIVSNQSLVLQNV-----SRARAGHYTCVGSNG-EGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~-~~~~~~~~tL~i~~v-----~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V 56 (70)
+|||.++..+.. +..+..+++|.|.++ +++|+|.|+|.|.|. .|...|.+++|.|
T Consensus 34 ~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 34 KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 578888864432 344567889999887 689999999999999 9999999999876
No 41
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=1.5e-11 Score=68.05 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=33.7
Q ss_pred ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 37 ~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~ 75 (75)
T cd05763 37 PEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL 75 (75)
T ss_pred cCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence 356799999999999999999999999985 556888873
No 42
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.27 E-value=1e-11 Score=67.71 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=38.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|++..+... +.....+++|+|.+++++|+|.|+|.|+|..|...+ .+.|.|
T Consensus 18 ~k~~~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 69 (69)
T cd05725 18 RKEDGELPKG--RAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEA-SASLTV 69 (69)
T ss_pred EECCccCCCC--cEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEE-EEEEEC
Confidence 3555555332 233447789999999999999999999999998644 566654
No 43
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.27 E-value=1.9e-11 Score=69.49 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=41.8
Q ss_pred cccCeEcCc----CccceEEecCCEEEEccc-----CCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYN----NISAGVIVSNQSLVLQNV-----SRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~----~~~~~~~~~~~tL~i~~v-----~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++.. ...+...+.++.+.+..+ +++|+|.|+|.|+|..|...|..+.|.|
T Consensus 36 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 36 LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 578888865 223344556666554443 7899999999999999998899999987
No 44
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.26 E-value=1.9e-11 Score=68.40 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=41.0
Q ss_pred cccCeEcCcCc--cceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLYNNI--SAGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~~~~--~~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
+|||.++.... +..+...+++|+|.+++. +|+|.|+|.|+|..|...|..++|
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 18 TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 57888885432 222334578999999864 799999999999999999988776
No 45
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.26 E-value=2.4e-11 Score=68.30 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=40.6
Q ss_pred cccCeEcCcCcc--ceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLYNNIS--AGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~~~~~--~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
+|||.++..... ..+...+++|+|..++. .|+|.|+|.|+|..|...|..++|
T Consensus 18 ~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 18 TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred EECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 578888743322 22334689999999874 488999999999999999988776
No 46
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.26 E-value=1.2e-11 Score=70.87 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=40.2
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCC-CCCeeeEEEeEeCCCcccceeE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSR-ARAGHYTCVGSNGEGDGQSNAQ 52 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~-~D~G~Y~C~a~N~~G~~~s~~~ 52 (70)
+|||+++...........+++|.|.++.+ +|+|.|+|.|+|..|...|.++
T Consensus 39 ~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~~ 90 (91)
T cd04967 39 LMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSREA 90 (91)
T ss_pred EECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEeccc
Confidence 57888885333334456788999999875 9999999999999999888754
No 47
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.26 E-value=3.1e-11 Score=68.98 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.8
Q ss_pred EEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
.+..+++|+|.+++++|+|.|+|.|.|..|...+ .+.|.|...
T Consensus 42 ~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~~~ 84 (90)
T cd05726 42 SVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT-KAYLEVTDV 84 (90)
T ss_pred EECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE-EEEEEEeec
Confidence 3345789999999999999999999999998654 689999844
No 48
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.26 E-value=2e-11 Score=68.49 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=40.9
Q ss_pred cccCeEcCcCccc---eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISA---GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~---~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||.++..+.+. .......+|.|.+++.+|+|.|+|.|.|..|+... .+.|+|
T Consensus 29 ~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v 85 (85)
T cd05857 29 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDV 85 (85)
T ss_pred EECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE-EEEEEC
Confidence 5788888754432 12234568999999999999999999999998544 677765
No 49
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.26 E-value=2.7e-11 Score=68.05 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=40.8
Q ss_pred cccCeEcC--cCccceEEecCCEEEEcccCC----CCCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLY--NNISAGVIVSNQSLVLQNVSR----ARAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~--~~~~~~~~~~~~tL~i~~v~~----~D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
+|||.++. .+.+..+...+++|.|.+++. .|+|.|+|.|+|..|...|..++|
T Consensus 18 ~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 18 TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred EECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 57888764 333333334788999998753 579999999999999999988876
No 50
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.25 E-value=2.4e-11 Score=69.55 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.6
Q ss_pred cccCeEcCcCc-cceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNI-SAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~-~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++...+ +..+.. ..++|.|.+++++|+|.|+|.|+|..|+. +..+.|.|
T Consensus 30 ~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V 86 (86)
T cd05894 30 SRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV 86 (86)
T ss_pred EECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence 57888886533 332222 23589999999999999999999999985 34566654
No 51
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.25 E-value=2.1e-11 Score=68.49 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=36.7
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
+|||.+|..+.+ +.+.+++|.|.+++.+|+|.|+|.|.|..|..
T Consensus 28 ~k~g~~l~~~~~--~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 28 TKDGVQLGENNR--TRITGEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred eeCCcCCCCCce--EEEeCCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 688988876543 33467899999999999999999999999874
No 52
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.24 E-value=2.2e-11 Score=66.96 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=39.5
Q ss_pred cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
|++.+... .+.....+++|.|.+++++|+|.|+|.|+|..|.. +..+.|.|
T Consensus 24 ~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 24 DGKLISNS-SRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred CCEEecCC-CeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 56666543 33455678999999999999999999999999975 44566654
No 53
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.24 E-value=2.4e-11 Score=69.00 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=41.5
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|||+++..+.+ +...+++|.|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 34 ~k~g~~~~~~~~--~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V 85 (85)
T cd05728 34 LKNGQPLASENR--IEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYA-SAELAV 85 (85)
T ss_pred EECCEECCCCCe--EEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEE-EEEEEC
Confidence 578888865443 3457889999999999999999999999998543 566654
No 54
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.23 E-value=2.4e-11 Score=67.89 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=38.1
Q ss_pred cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCccccee
Q psy7035 2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~ 51 (70)
++|+.++..+.+..+... .++|+|.+++++|+|.|+|.|.|..|...+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 21 RLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred EECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 467777765544333333 35899999999999999999999999877654
No 55
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.23 E-value=2.4e-11 Score=68.19 Aligned_cols=54 Identities=19% Similarity=0.060 Sum_probs=41.1
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeC-CCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNG-EGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~-~G~~~s~~~~L~V 56 (70)
+|||+++..+.. ....++++|.|.+++.+|+|.|+|.|+|. .|......++|.|
T Consensus 18 ~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~~ 72 (72)
T cd07702 18 LKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLIV 72 (72)
T ss_pred EECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEEC
Confidence 588998875432 33456779999999999999999999997 5565565666543
No 56
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.23 E-value=3.1e-11 Score=65.51 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=39.4
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++++.++..+ +......+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 18 ~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 18 IKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred EECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 3566666433 22233456799999999999999999999999975 44677776
No 57
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.22 E-value=6e-11 Score=70.57 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=43.9
Q ss_pred cccCeEcCc-CccceEE------ecCCEEEEcccC-CCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035 2 SFSNVQLYN-NISAGVI------VSNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG 61 (70)
Q Consensus 2 ~~ng~~l~~-~~~~~~~------~~~~tL~i~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~ 61 (70)
++||.+|.. +.+.... ..+++|+|.+++ ++|.|.|+|.|.|..|.. +..+.|.|...|+
T Consensus 43 ~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p~ 109 (109)
T cd05773 43 AKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRPD 109 (109)
T ss_pred EECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCCC
Confidence 578888864 3322211 113689999998 599999999999999996 5578999986664
No 58
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.21 E-value=5e-11 Score=67.68 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=39.2
Q ss_pred ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
|+|..+..... ....+++|.|.+++.+|+|.|+|.|.|..|.... .+.|.|+
T Consensus 37 k~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~ 88 (88)
T cd04968 37 KVDGSMPSSAE--ISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH-QGRIYVQ 88 (88)
T ss_pred ECCCcCCCccE--EEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE-EEEEEEC
Confidence 45555443322 2357889999999999999999999999998644 6777763
No 59
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.20 E-value=1.3e-10 Score=64.28 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=41.8
Q ss_pred cccCeEcCcCccc-eEEecC-CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNISA-GVIVSN-QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~~~-~~~~~~-~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||+.+....+. .....+ .+|.|.+++.+|.|.|+|.|.|..|..+. .+.|.|.
T Consensus 18 ~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~V~ 74 (76)
T cd05736 18 LKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED-ISSLFVE 74 (76)
T ss_pred EECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce-EEEEEEE
Confidence 4788887643322 223344 47999999999999999999999998754 7888885
No 60
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.20 E-value=2.7e-11 Score=67.00 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=38.2
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++||.++.............+|.|.+++.+|+|.|+|.|+|..|.. +..+.|+|
T Consensus 29 ~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 82 (82)
T cd05856 29 LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV 82 (82)
T ss_pred EECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence 4667666543322222334689999999999999999999999974 44555553
No 61
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=9.7e-11 Score=68.21 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=36.8
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQ 48 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~ 48 (70)
+|||+++..+..+ + ..+++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 35 yk~~~~i~~~~~~-~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 35 YKDCKLLEGDRKR-F-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eECCEECCCCccE-E-ecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 5899998755433 2 3888999999999999999999999977643
No 62
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.16 E-value=7.6e-11 Score=68.72 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=39.4
Q ss_pred cccCeEcCc--CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYN--NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~--~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|+|.++.. .....+...+++|.|.+++.+|+|.|+|.++|..|.... .+.|+|
T Consensus 39 yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~-~~~L~v 94 (94)
T cd05756 39 YKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV-SISLTV 94 (94)
T ss_pred EEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE-EEEEEC
Confidence 567765432 112223346789999999999999999999999998655 566664
No 63
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.15 E-value=1.8e-10 Score=66.49 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=36.1
Q ss_pred cccCeEcCcCccceEEecCC---EEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035 2 SFSNVQLYNNISAGVIVSNQ---SLVLQNVSRARAGHYTCVGSNGEGDGQ 48 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~---tL~i~~v~~~D~G~Y~C~a~N~~G~~~ 48 (70)
+|+|.++..+.+..+....+ +|.|.+++.+|+|.|+|.|+|..|...
T Consensus 36 ~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 36 FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred EECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 57788776554444433332 899999999999999999999999753
No 64
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.13 E-value=1.9e-10 Score=64.72 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=42.1
Q ss_pred cccCeEcCcCccceEEe--cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIV--SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~--~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++||.++..+.+..+.. ...+|.|.+++++|+|.|+|.|+|..|.... .+.|.|
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~-~~~l~V 90 (90)
T PF07679_consen 35 YKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA-SVNLTV 90 (90)
T ss_dssp EETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE-EEEEEE
T ss_pred cccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE-EEEEEC
Confidence 57888888766555544 3458999999999999999999999887543 566665
No 65
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.13 E-value=1.8e-10 Score=65.87 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.2
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++|+|.+++.+|+|.|+|.|.|..|...+ .+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHH-SAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccc-eEEEEE
Confidence 47999999999999999999999998644 678887
No 66
>KOG3513|consensus
Probab=99.12 E-value=1e-10 Score=90.50 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=50.5
Q ss_pred ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035 3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66 (70)
Q Consensus 3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p 66 (70)
++|..+...+++..++.+|+|.|.+++++|+|.|+|.|+|..|.+.+ .+.|.|+..+.+.-+|
T Consensus 461 ~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~-~~~L~Vkd~tri~~~P 523 (1051)
T KOG3513|consen 461 LKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES-TGNLIVKDATRITLAP 523 (1051)
T ss_pred EcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce-EEEEEEecCceEEecc
Confidence 34434555566788889999999999999999999999999999876 6899999666543333
No 67
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.12 E-value=9.7e-11 Score=67.19 Aligned_cols=37 Identities=32% Similarity=0.451 Sum_probs=32.6
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
.++|.|.+|+.+|+|.|+|.|+|..|.... ++.|.|+
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~-sa~L~V~ 90 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHH-SAWLTVL 90 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccC-CEEEEeC
Confidence 358999999999999999999999998644 7888874
No 68
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.10 E-value=2.1e-10 Score=65.53 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=39.2
Q ss_pred cccCeEcCcCccceE--EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGV--IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~--~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++||.++..+..... .....+|.|.+++.+|.|.|+|.|+|..|+... .+.|.|
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~-~~~L~v 90 (90)
T cd04972 35 IIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV-SVQVTV 90 (90)
T ss_pred EECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE-EEEEeC
Confidence 567877754432211 123458999999999999999999999998644 566654
No 69
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.09 E-value=2e-10 Score=62.89 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=36.1
Q ss_pred cccCeEcCcCccce-EEe----cCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035 2 SFSNVQLYNNISAG-VIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49 (70)
Q Consensus 2 ~~ng~~l~~~~~~~-~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s 49 (70)
+|||+++....+.. ..+ ..++|+|.+++.+|+|.|+|.|+|..|....
T Consensus 19 ~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 19 FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred EcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 57888886543322 112 3468999999999999999999999997543
No 70
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.09 E-value=4.6e-10 Score=64.33 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=36.2
Q ss_pred cccCeEcCcCccceEEec--CCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 2 SFSNVQLYNNISAGVIVS--NQSLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~--~~tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
+|||.++..+.+..+... .++|.|.+++.+|+|.|+|.|+|..|..
T Consensus 38 ~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 38 MREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred EECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 478888766554444322 3589999999999999999999999974
No 71
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.08 E-value=4.7e-10 Score=64.93 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=30.5
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++|+|.+++.+|+|.|+|.|+|..|.. +..+.|.|
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 97 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQD-SQSMYLEV 97 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence 589999999999999999999999986 44677765
No 72
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.03 E-value=4.6e-10 Score=62.13 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=34.5
Q ss_pred cccCeEcCcCc--cceEEe----cCCEEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035 2 SFSNVQLYNNI--SAGVIV----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQ 48 (70)
Q Consensus 2 ~~ng~~l~~~~--~~~~~~----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~ 48 (70)
+|||+++.... +..+.. ..++|.|.+++.+|+|.|+|.|+|..|...
T Consensus 19 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 19 FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 57888885321 111111 236899999999999999999999999653
No 73
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.03 E-value=1.2e-09 Score=64.40 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=35.6
Q ss_pred cccCeEcCcCccceEEe-cCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035 2 SFSNVQLYNNISAGVIV-SNQSLVLQNVSRARAGHYTCVGSNGEGD 46 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~-~~~tL~i~~v~~~D~G~Y~C~a~N~~G~ 46 (70)
|||+++|..+.++...+ ....|.|.+|+.+|+|.|+|.|.|..|.
T Consensus 35 YKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 35 YKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred ccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 68999987655443333 3468999999999999999999998654
No 74
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.02 E-value=6.5e-10 Score=61.60 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=32.2
Q ss_pred ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
...++|+|.+++.+|+|.|+|.|.|..|+... .+.|.|
T Consensus 44 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~-~~~l~v 81 (81)
T cd05765 44 TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA-NFPLSV 81 (81)
T ss_pred ccccEEEEccCCcccCEEEEEEEecCCceEEE-EEEEeC
Confidence 35579999999999999999999999998544 677765
No 75
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.01 E-value=1.1e-09 Score=62.25 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=42.2
Q ss_pred cccCeEcCcCc--cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYNNI--SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~~~--~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+|||..+.... ...+....+.|.|.+++.+|+|.|.|.|.|..+...+.++.|.|.
T Consensus 30 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 30 LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 46676665432 223444566799999999999999999999887777777888875
No 76
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.01 E-value=5.5e-10 Score=64.73 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=31.1
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+++|+|.+++.+|+|.|+|.|+|..|... ..+.|+|
T Consensus 63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 98 (98)
T cd05870 63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQ-KSMYLDI 98 (98)
T ss_pred eeEEEEeeCCcCCCEEEEEEEeccCCcce-eEEEEeC
Confidence 35899999999999999999999999754 4677765
No 77
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.00 E-value=4.3e-10 Score=66.46 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=35.1
Q ss_pred cccCeEc--CcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 2 SFSNVQL--YNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 2 ~~ng~~l--~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
++|+.++ ..+.++.+...+|.|.|.+|+++|+|.|+|.|+|.++..
T Consensus 39 ~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 39 LLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred EECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4566554 345555555568999999999999999999999986644
No 78
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.00 E-value=5.5e-10 Score=63.53 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=35.1
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.+.+|.|.+++.+|+|.|+|.|.|..|+..|+++.|+|
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 35689999999999999999999999999999999876
No 79
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.99 E-value=5.6e-10 Score=63.12 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=30.2
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++++|+|.++ ++|+|.|+|.|.|. ..|.+++|+|
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence 5679999999 99999999999985 6788898876
No 80
>KOG4222|consensus
Probab=98.99 E-value=6.7e-10 Score=86.48 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=54.7
Q ss_pred cccCeEcCc-CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035 2 SFSNVQLYN-NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66 (70)
Q Consensus 2 ~~ng~~l~~-~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p 66 (70)
+|||.++.. +.....++++|.|.|+||+++|+|.|+|+|.|.+|+.+|.+++|.|+..|..--+|
T Consensus 167 ~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp 232 (1281)
T KOG4222|consen 167 VKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRP 232 (1281)
T ss_pred ecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccc
Confidence 578888873 33344567999999999999999999999999999999999999999888654444
No 81
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.98 E-value=1e-09 Score=62.72 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=30.7
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++|+|.+++.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~v 96 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGD-QQSMYLEV 96 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence 489999999999999999999999986 55677764
No 82
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.94 E-value=1.4e-09 Score=63.14 Aligned_cols=42 Identities=24% Similarity=0.427 Sum_probs=34.8
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+|||++|..+..+ ..+.++.|+|.+++++|+|.|+|.|.+..
T Consensus 30 ~~ng~~i~~~~~r-~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 30 KFDGKVLTPESAK-YLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EECCEECCCCCce-EEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 5899999765433 34577899999999999999999999974
No 83
>KOG3513|consensus
Probab=98.93 E-value=3.1e-09 Score=82.39 Aligned_cols=64 Identities=17% Similarity=0.246 Sum_probs=51.1
Q ss_pred cccCeEcCcCc-cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC-CCCCCCC
Q psy7035 2 SFSNVQLYNNI-SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG-LGIPAEP 66 (70)
Q Consensus 2 ~~ng~~l~~~~-~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~-p~~~~~p 66 (70)
+|||.+|...+ .....+.+|+|+|.+|+.+|+|.|+|.|+|..|...+ .+.|.|+.- |..+-.|
T Consensus 366 lkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~a-nA~L~V~a~~P~f~~~p 431 (1051)
T KOG3513|consen 366 LKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYA-NAELKVLASAPVFPLNP 431 (1051)
T ss_pred eeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEee-eeEEEEEccCCCCCCCc
Confidence 68999997433 3346678999999999999999999999999998755 688999864 5444333
No 84
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.91 E-value=2.2e-09 Score=61.20 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=36.9
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~ 55 (70)
+|||+++.... ....++|.|.++. |+|.|+|.|+|..|...|..++|+
T Consensus 34 ~k~g~~l~~~~----~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s~~a~~~ 81 (81)
T cd05749 34 WQGGSPLGDPP----APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTSRTGTVT 81 (81)
T ss_pred EECCEECCCCC----CCCCCEEEEcccc--CCeEEEEEEEeccCcEEeeeEEeC
Confidence 57888875311 1245789999984 789999999999999988887763
No 85
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.91 E-value=4.1e-09 Score=58.07 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=34.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
+|||+++....+ ....+..|.|.+++ |+|.|+|.|.|..|.... ++.|
T Consensus 21 ~k~g~~l~~~~~--~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~-~a~l 68 (69)
T cd05739 21 MKGGEELTKEDE--MPVGRNVLELTNIY--ESANYTCVAISSLGMIEA-TAQV 68 (69)
T ss_pred EECCEECCCccc--eecCccEEEEeccc--cCeeEEEEEEeCCCEEEE-EEEE
Confidence 477888755432 23355689999984 899999999999997544 4444
No 86
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.89 E-value=5e-09 Score=62.51 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=35.8
Q ss_pred cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.+..+..||+|.|++++++|+|.|+|.+.|.....+...+.|.|
T Consensus 62 gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 62 GRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 45667789999999999999999999999987665555565553
No 87
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.89 E-value=4.8e-09 Score=60.73 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=36.2
Q ss_pred cccCeEcCcCc-cceEEecC-------CEEEEcccCCC-CCeeeEEEeEeCCCcccceeEEE
Q psy7035 2 SFSNVQLYNNI-SAGVIVSN-------QSLVLQNVSRA-RAGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 2 ~~ng~~l~~~~-~~~~~~~~-------~tL~i~~v~~~-D~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
++||+++...+ .+..+..+ ++|+|.++.++ |.|.|+|.|.|..|.+.. .+.|
T Consensus 37 ~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~-~~~L 97 (98)
T cd05758 37 TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA-IISL 97 (98)
T ss_pred EECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccE-EEEe
Confidence 36777775432 23333222 38999999994 499999999999998654 4554
No 88
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.83 E-value=4.9e-09 Score=59.03 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=30.3
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
..+|+|.+++.+|+|.|+|.|+|..|.... +..|.|
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~-s~~v~v 83 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQKE-STKVNI 83 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCceEE-EEEEEE
Confidence 358999999999999999999999987543 566665
No 89
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.83 E-value=1.9e-08 Score=55.59 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=37.3
Q ss_pred cccCeEcCcCccceEE---ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVI---VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~---~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+++|..+..+...... ....+|.|.+++.+|+|.|+|.|.|..|.. +.++.|+|
T Consensus 29 ~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v 85 (85)
T cd05729 29 LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV 85 (85)
T ss_pred EECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence 4667666543322211 122479999999999999999999999984 44666654
No 90
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.83 E-value=1.2e-08 Score=57.92 Aligned_cols=38 Identities=11% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~ 57 (70)
..+|+|.+++.+|+|.|+|.|+|..+ ...+.++.|+|.
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 35899999999999999999999865 455778888885
No 91
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.79 E-value=2e-08 Score=51.47 Aligned_cols=41 Identities=32% Similarity=0.459 Sum_probs=31.0
Q ss_pred ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
++|..+. ........+.+|.|.+++..|+|.|+|.+.|..|
T Consensus 23 ~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 23 KDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred ECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 4565555 2223334567999999999999999999999765
No 92
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.78 E-value=2.2e-08 Score=66.59 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=35.1
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+|||++|..+.+..+...+++|+|.+|+++|+|.|+|.|+...
T Consensus 169 yKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 169 YKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 5899999766554444456799999999999999999999863
No 93
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.72 E-value=2.5e-08 Score=56.99 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=31.0
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
..+|.|.+++.+|+|.|+|.|+|..|... ....|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~-~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIAK-NSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEec-ccEEEEEe
Confidence 35899999999999999999999988543 35677775
No 94
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.72 E-value=8.1e-08 Score=51.48 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=37.3
Q ss_pred CeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 5 NVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 5 g~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++++..+.+......+ .+|.|.+++..|+|.|+|.+.|..+..... +.|.|
T Consensus 33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~V 85 (86)
T smart00410 33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST-TTLTV 85 (86)
T ss_pred CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEEE
Confidence 5666533333333333 689999999999999999999988876555 77776
No 95
>smart00409 IG Immunoglobulin.
Probab=98.72 E-value=8.1e-08 Score=51.48 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=37.3
Q ss_pred CeEcCcCccceEEecC--CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 5 NVQLYNNISAGVIVSN--QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 5 g~~l~~~~~~~~~~~~--~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
++++..+.+......+ .+|.|.+++..|+|.|+|.+.|..+..... +.|.|
T Consensus 33 ~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~-~~l~V 85 (86)
T smart00409 33 GKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST-TTLTV 85 (86)
T ss_pred CEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE-EEEEE
Confidence 5666533333333333 689999999999999999999988876555 77776
No 96
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.69 E-value=6.5e-08 Score=56.52 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=27.1
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.+|.|++|+.+|+|.|+|.|.. +...+..++|.|
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t--~~~~~~~~~~~v 95 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFT--MPVRTAKATVTV 95 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEe--eccccEEEEEEC
Confidence 5899999999999999999998 334455566654
No 97
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.69 E-value=2.9e-08 Score=55.85 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=28.2
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s 49 (70)
.+++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 50 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 50 FNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred cCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 4689999999999999999999999997655
No 98
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.67 E-value=6.9e-08 Score=54.57 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=34.1
Q ss_pred EecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
...+++|.|.+++.+|+|.|+|......|......+.|.|
T Consensus 53 ~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 53 IYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred EcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 3467899999999999999999999988877777777654
No 99
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.66 E-value=7.9e-08 Score=55.61 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=32.6
Q ss_pred EecCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035 17 IVSNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD 57 (70)
Q Consensus 17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~ 57 (70)
...+++|.|.+++++|+|.|+|.|.| ..+.... .++|.|.
T Consensus 49 ~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~-~~~l~v~ 89 (91)
T cd05871 49 IHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA-KYTLHVI 89 (91)
T ss_pred EEecCeEEEeeCChhHCEEEEEEEEccCCeEEEE-EEEEEEe
Confidence 44668899999999999999999985 6665444 7888886
No 100
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.59 E-value=1.3e-07 Score=54.94 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.+|.|.+++.+|+|.|+|.+.+..+ .+..+.|.|
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~--~~~~~~l~v 95 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPV--KTSKAYLTV 95 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecC--ccEEEEEEC
Confidence 5899999999999999999998533 355677765
No 101
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.58 E-value=1.1e-07 Score=55.31 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=34.3
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+.+|+|.+++.+|+|.|.|...+..|......+.|.|+
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY 97 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence 47999999999999999999999889888888888874
No 102
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.57 E-value=8.4e-08 Score=58.58 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=34.8
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
+|+|.+++.+|+|.|.|.+.|..|.. +..++|.|..+|.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCce
Confidence 79999999999999999999987774 56789999977754
No 103
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.56 E-value=1.8e-07 Score=56.18 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.9
Q ss_pred eEEecCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035 15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD 46 (70)
Q Consensus 15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~ 46 (70)
.+...+..|.|.++..+|+|.|+|.++|.-..
T Consensus 64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C 95 (104)
T cd05896 64 RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC 95 (104)
T ss_pred eEEEeCCEEEEEeCChhhCeEEEEEECCCCcc
Confidence 44567889999999999999999999998654
No 104
>KOG4221|consensus
Probab=98.55 E-value=1.9e-07 Score=73.63 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=51.9
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCc
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPL 67 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~ 67 (70)
++||..|..++.+..+...++|.|.+++..|+|.|+|.|.|..-.. ...+.|+|+..|..+..|.
T Consensus 272 lrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~ 336 (1381)
T KOG4221|consen 272 LRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPT 336 (1381)
T ss_pred eeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCc
Confidence 4788999877755666678899999999999999999999943332 3367899998888777663
No 105
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.53 E-value=1.2e-07 Score=51.48 Aligned_cols=35 Identities=37% Similarity=0.642 Sum_probs=31.2
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.|.|.+++.+|+|.|+|.|.|..+...|.++.|.|
T Consensus 46 ~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 46 GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 38889999999999999999988888888888876
No 106
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.52 E-value=3.1e-07 Score=54.22 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=32.3
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD 57 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~ 57 (70)
.+.+|+|.+++.+|.|.|.|...| +.|. .+..+.|.|+
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence 458999999999999999999999 5775 5667888874
No 107
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.51 E-value=6.2e-07 Score=52.40 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.2
Q ss_pred CCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY 56 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V 56 (70)
+.+|+|.+++.+|+|.|.|...+ +.|. ....+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 56899999999999999999999 5665 355677776
No 108
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.50 E-value=1.9e-07 Score=62.11 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+++|+|.+++++|+|.|+|.|+|..|.. ...+.|.|.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~ 133 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFD 133 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEe
Confidence 5799999999999999999999988764 446778875
No 109
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.50 E-value=1.5e-07 Score=55.45 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=28.9
Q ss_pred ccceEEecCCEEEEcccCCCCCe-eeEEEeEeCCCc
Q psy7035 12 ISAGVIVSNQSLVLQNVSRARAG-HYTCVGSNGEGD 46 (70)
Q Consensus 12 ~~~~~~~~~~tL~i~~v~~~D~G-~Y~C~a~N~~G~ 46 (70)
+++..+..+|+|.|.+|+++|+| .|+|.|+|....
T Consensus 49 ~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 49 DERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 34555556799999999999999 899999998643
No 110
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.49 E-value=4.7e-07 Score=62.59 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=32.7
Q ss_pred EecCCEEEEcccCCCCCeeeEEEeEeCCCcccc---eeEEEEEE
Q psy7035 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS---NAQKTAYD 57 (70)
Q Consensus 17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s---~~~~L~V~ 57 (70)
...+++|.|.+|+++|+|.|+|.|+|..|.... ..+.|.|.
T Consensus 173 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 173 QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 345789999999999999999999999886532 34566665
No 111
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.49 E-value=2.7e-07 Score=53.16 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.4
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
-+|.|.+++.+|+|.|.|.+.|..+. ....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 48999999999999999999997665 555666765
No 112
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.47 E-value=1.8e-07 Score=53.66 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=31.7
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeC-C-CcccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNG-E-GDGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~-~-G~~~s~~~~L~V 56 (70)
..+.+.|.+|+++|+|.|+|...|. . -+..|+++.|.|
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 3467999999999999999999996 2 356788888877
No 113
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=2e-07 Score=49.43 Aligned_cols=18 Identities=44% Similarity=0.811 Sum_probs=17.5
Q ss_pred EEEcccCCCCCeeeEEEe
Q psy7035 23 LVLQNVSRARAGHYTCVG 40 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a 40 (70)
|.|.+++++|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 114
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.42 E-value=5.7e-07 Score=51.52 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=37.1
Q ss_pred cccCeEcCcCccc----eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccc--eeEEEE
Q psy7035 2 SFSNVQLYNNISA----GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS--NAQKTA 55 (70)
Q Consensus 2 ~~ng~~l~~~~~~----~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s--~~~~L~ 55 (70)
|+||++|...... ...-..++|.|...+.+|.+.|+|+|.|.++.... ....|+
T Consensus 20 ~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 20 YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 7889998643211 10112347999999999999999999999886433 344444
No 115
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.42 E-value=1e-06 Score=53.32 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=29.3
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V 56 (70)
.+.+|.|++++.+|+|.|+|...|.-+ ......++|.|
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 556999999999999999999999855 33334455543
No 116
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.37 E-value=1.3e-06 Score=48.79 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=35.2
Q ss_pred cccCeEcCcCccceEEecC-------CEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSN-------QSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~-------~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V 56 (70)
++||+++...........+ .+|.|......|.|.|+|.|+|... .....+++|+|
T Consensus 20 ~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 20 FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 5788887543221222222 2688888888899999999999754 33444566554
No 117
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.37 E-value=1.1e-06 Score=50.11 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=29.0
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V 56 (70)
.+.+|+|.+++.+|+|.|.|.+.+ ..|. ....+.|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEe
Confidence 356999999999999999999886 4554 344566766
No 118
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.36 E-value=1.7e-06 Score=59.87 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=33.3
Q ss_pred EecCC-EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 17 IVSNQ-SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 17 ~~~~~-tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
..+++ .|.|.++..+|+|.|+|.|+|..|... ..+.|+|...
T Consensus 77 ~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~-~s~~L~V~~~ 119 (326)
T PHA02785 77 PIDNGSNMLILNPTQSDSGIYICITKNETYCDM-MSLNLTIVSV 119 (326)
T ss_pred EccCCceEEEcccCcccCeEEEEEEECCCcceE-EEEEEEEEec
Confidence 34455 499999999999999999999988744 4678888643
No 119
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.34 E-value=9.9e-07 Score=50.52 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+.+|+|.+++.+|+|.|+|.+.+.... +..+.|+|
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~--~~~~~~~v 95 (95)
T cd05717 61 ELSISISNVSLSDEGRYTCSLYTMPVQ--TAKATVTV 95 (95)
T ss_pred eeEEEEccCCcccCEEEEEEEecCCCc--eEEEEEEC
Confidence 347999999999999999999987532 44455654
No 120
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.30 E-value=1.6e-06 Score=50.51 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=32.0
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
.+.+|+|.+++.+|+|.|.|.+.|..+. ....+.|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence 3568999999999999999999997553 4667888886
No 121
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.30 E-value=1.2e-06 Score=51.74 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=27.1
Q ss_pred CEEEEcccCCCC-CeeeEEEeEeCCCcccceeEEE
Q psy7035 21 QSLVLQNVSRAR-AGHYTCVGSNGEGDGQSNAQKT 54 (70)
Q Consensus 21 ~tL~i~~v~~~D-~G~Y~C~a~N~~G~~~s~~~~L 54 (70)
.+|+|.++.+.| .|.|.|.|.|..|+..- .++|
T Consensus 64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~-~i~L 97 (98)
T cd05898 64 STLTINNIMEADFQTHYNCTAWNSFGSGTA-IIQL 97 (98)
T ss_pred EEEEECCCccccCCcEEEEEEEeCCccceE-EEEe
Confidence 479999998877 89999999999998633 4554
No 122
>KOG4221|consensus
Probab=98.27 E-value=2.2e-06 Score=67.79 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=50.8
Q ss_pred ccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 3 ~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
||.+++..++ +.+.+.+|.|.|.+++..|.|.|.|.++|..-+..|..+.|+|...|..
T Consensus 176 kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~ 234 (1381)
T KOG4221|consen 176 KNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGA 234 (1381)
T ss_pred cccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccc
Confidence 5566677776 6677899999999999999999999999998888899999999966643
No 123
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.27 E-value=2.7e-06 Score=50.05 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=29.8
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAY 56 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V 56 (70)
.+.+|.|.+++.+|+|.|.|...+ +.|.. ...+.|.|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEE
Confidence 478999999999999999998665 57764 44667776
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.24 E-value=2.1e-06 Score=49.95 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.4
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
.+|.|.+++.+|+|.|.|.+.|..+.. ...+.|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEccCChHHCEEEEEEEEecccce-EEEEEEEEE
Confidence 489999999999999999999987754 556777774
No 125
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.23 E-value=1.1e-06 Score=46.89 Aligned_cols=26 Identities=46% Similarity=0.814 Sum_probs=23.5
Q ss_pred EecCCEEEEcccCCCCCeeeEEEeEe
Q psy7035 17 IVSNQSLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N 42 (70)
...+++|.|.+++.+|.|.|+|.|+|
T Consensus 50 ~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 50 SSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred cceeeEEEEccCCHHhCcEEEEEEEC
Confidence 34567999999999999999999998
No 126
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.21 E-value=2.8e-06 Score=50.49 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=28.2
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAY 56 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V 56 (70)
.+|+|.+++.+|+|.|.|.+.|.-... .+..++|.|
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 589999999999999999999975532 234566654
No 127
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.20 E-value=2.8e-06 Score=50.86 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCc-ccceeEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGD-GQSNAQKTAY 56 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~-~~s~~~~L~V 56 (70)
+.+|+|.+++.+|+|.|.|.+.|.-+. .....+.|.|
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 458999999999999999999997663 2344566654
No 128
>KOG4194|consensus
Probab=98.19 E-value=2.9e-06 Score=64.09 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=42.0
Q ss_pred CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035 11 NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG 61 (70)
Q Consensus 11 ~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~ 61 (70)
..+..+..++.-..|.||+.+|+|.|+|.|.|.+|+. +..++|.|...|.
T Consensus 659 eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~ 708 (873)
T KOG4194|consen 659 ERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPS 708 (873)
T ss_pred hheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCc
Confidence 3345566677889999999999999999999999986 5578999997764
No 129
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.16 E-value=5.9e-06 Score=47.72 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=30.8
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGD 46 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~ 46 (70)
++||.++..+.+ +.....-|.|.+++.+|+|.|+|.|. ..|.
T Consensus 30 ~~ng~~l~~~~r--~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf 71 (85)
T cd05872 30 LFNGTPLNAQFS--YRVGTDGLLILVTSPEHSGTYRCYSE-EEGF 71 (85)
T ss_pred EECCcccCCCcc--eEEeCCCCEEEECCHhhCEEEEEEEe-cCCC
Confidence 478888876543 33344558899999999999999987 3343
No 130
>PHA02633 hypothetical protein; Provisional
Probab=98.15 E-value=9.3e-06 Score=44.77 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=32.0
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGL 60 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p 60 (70)
....|+|-+++.+|+|.|.|..+|..-.... ++.|.|.-..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~-si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMM-KFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEE-EEEEEEeecc
Confidence 4568999999999999999999986544333 5777777554
No 131
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.13 E-value=6e-06 Score=47.67 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=30.7
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYD 57 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~ 57 (70)
.+.+|+|.+++.+|+|.|.|...+ +.|. .+..+.|+|+
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~-~~~~~~L~v~ 97 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGS-KSGTMCLTVY 97 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCC-eeeEEEEEEC
Confidence 456899999999999999998776 4555 5667888873
No 132
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.10 E-value=9e-06 Score=48.91 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=30.9
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
.+-+|+|.+++.+|+|.|.|...+... ..+..+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIE-DNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence 466999999999999999999996544 34667777775
No 133
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.09 E-value=1.5e-05 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=25.1
Q ss_pred cCccceEEe-cCC--EEEEcccCCCCCeeeEEEeEeC
Q psy7035 10 NNISAGVIV-SNQ--SLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 10 ~~~~~~~~~-~~~--tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
.++|....- ++. +|.|++++.+|+|.|+|.+...
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 455544332 233 6999999999999999999763
No 134
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.09 E-value=1.8e-06 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=23.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
+|+|.+++.+|+|.|.|.+.|..++.
T Consensus 66 ~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 66 PLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred EEEECCCCHHHCEEEEEEECCccceE
Confidence 59999999999999999999987654
No 135
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.07 E-value=1.1e-05 Score=47.99 Aligned_cols=37 Identities=16% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+.+|+|.+++.+|+|.|.|....... .....+.|+|.
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~-~~~~~v~l~V~ 107 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIE-DEQDTVPLEVT 107 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCC-cceEEEEEEEE
Confidence 45799999999999999999998654 34557888886
No 136
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.05 E-value=1.2e-05 Score=45.87 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=27.5
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|+|.+++.+|+|.|.|.............+.|.|
T Consensus 80 sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 80 SLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 79999999999999999999874444444555554
No 137
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.93 E-value=3.5e-05 Score=45.25 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.2
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeC-CCc
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNG-EGD 46 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~-~G~ 46 (70)
.+.+|+|.||+.+|+|.|+|..... .|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~ 86 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGS 86 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCC
Confidence 4689999999999999999988774 664
No 138
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.92 E-value=2.1e-05 Score=47.18 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+-+|.|.+++.+|+|.|.|...... +.....+.|+|.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 4589999999999999999999854 445667888875
No 139
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.90 E-value=9.8e-06 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
+|+|.+++.+|+|.|.|.+.+..+
T Consensus 68 sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 68 TLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEECCCCHHHCEEEEEEEecCCC
Confidence 899999999999999999998764
No 140
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.88 E-value=2.1e-05 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.8
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
-+|.|.+++.+|+|.|.|.+.+..
T Consensus 70 ~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 70 SSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred EEEEECCCCHHHCEEEEEEEecCC
Confidence 379999999999999999999864
No 141
>KOG4194|consensus
Probab=97.87 E-value=2.3e-05 Score=59.32 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=38.9
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
+.|.+.||+-.|+|.|+|+++|-.|++.|..+.|+|...|..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsF 615 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSF 615 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCcc
Confidence 579999999999999999999999999999999999977743
No 142
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.86 E-value=5e-05 Score=46.33 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=31.6
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
.+-+|.|.+++.+|+|.|.|...+.... ....+.|+|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 3569999999999999999999987654 4557888875
No 143
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.67 E-value=0.00011 Score=43.91 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=29.3
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
..|.|.++..+|+|.|+|.|+|..+.. +-++.|.|+
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEEe
Confidence 579999999999999999999987753 445666654
No 144
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.65 E-value=7.5e-05 Score=42.91 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEcccCCCCCeeeEEEeEeC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+|+|++++.+|+|.|.|.+.+.
T Consensus 64 ~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 64 SLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEECCCChhhCEEEEEEEccC
Confidence 6999999999999999998764
No 145
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.63 E-value=5.6e-05 Score=44.01 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEcccCCCCCeeeEEEeEeC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+|.|++++.+|+|.|.|.+.+.
T Consensus 72 ~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 72 TLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEECCCChHHCEEEEEEEeCC
Confidence 6999999999999999999764
No 146
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.60 E-value=0.00035 Score=40.15 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=39.9
Q ss_pred cccCeEcCcCccceEEe-----cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 2 SFSNVQLYNNISAGVIV-----SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~-----~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
|++|+++.......... .-.+|.|..-+..|...|+|.|.|..=........|+|+|.
T Consensus 20 ~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y~ 82 (82)
T cd05883 20 FKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQYK 82 (82)
T ss_pred EECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEEC
Confidence 67888886432110011 12468887777788888999999976555777899999873
No 147
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.51 E-value=0.00013 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCC
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
-+|.|.+++.+|+|.|.|.+.+..
T Consensus 72 ~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 72 SSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred cEEEECCCChhhCEEEEEEeeCCC
Confidence 479999999999999999998753
No 148
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.51 E-value=0.00012 Score=41.91 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+|+|.+++.+|+|.|.|.+....
T Consensus 65 ~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 65 TVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEcCCCHHHCEEEEEEcccCC
Confidence 79999999999999999888753
No 149
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.45 E-value=0.00059 Score=44.82 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=32.3
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEe-CCCcccceeEEEEEEe
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSN-GEGDGQSNAQKTAYDI 58 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N-~~G~~~s~~~~L~V~~ 58 (70)
.+.+|+|.+|+++|+|.|.|...= +.|..++..+-|+|..
T Consensus 83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 677999999999999999996543 5665567778888874
No 150
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.42 E-value=0.00013 Score=42.80 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=26.1
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA 64 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~ 64 (70)
+|+|.+++.+|+|.|.|...+. -.+.+|+++|+
T Consensus 70 ~L~I~~~~~sDsgtY~Ca~~~~----------~~~~Fg~~~~~ 102 (104)
T cd05720 70 VLTLKNFQKENEGYYFCSVASN----------SVLYFSSFVPV 102 (104)
T ss_pred EEEECCCCHHHCEEEEEEEccC----------CceEEcCceec
Confidence 6999999999999999987642 25667776654
No 151
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.41 E-value=0.00016 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEcccCCCCCeeeEEEeEeC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+|+|.+++.+|+|.|.|...+.
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVGS 94 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcCC
Confidence 5999999999999999998643
No 152
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.37 E-value=0.00085 Score=40.56 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=42.4
Q ss_pred cccCeEcCc----CccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 2 SFSNVQLYN----NISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 2 ~~ng~~l~~----~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
|+||..... +++..+...|-+|.|..++..|+|.|.-+.+|..|......+++.|.
T Consensus 48 W~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 48 WKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 445544432 34556777899999999999999999999999999988777777775
No 153
>KOG4222|consensus
Probab=97.34 E-value=0.00025 Score=56.30 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=43.0
Q ss_pred cceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66 (70)
Q Consensus 13 ~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p 66 (70)
+..+..++.+|.|.+++..|.|.|.|.|.|.+|.. +..+.|+|+.+|..-.+|
T Consensus 270 ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp 322 (1281)
T KOG4222|consen 270 RYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKP 322 (1281)
T ss_pred ceeeeeccccccccccCCCcccceeeecccccccc-ccccceEEecCccccccc
Confidence 34455667999999999999999999999999975 457899999888654433
No 154
>KOG1480|consensus
Probab=97.23 E-value=0.00022 Score=54.92 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=45.6
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
++|+..+.. ++.......+.|+|..++..|.|+|+|+|.|..+...+.++...|+..
T Consensus 165 ~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~ 221 (909)
T KOG1480|consen 165 LKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVN 221 (909)
T ss_pred cccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEEc
Confidence 455555555 333445577899999999999999999999999999999888888753
No 155
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.20 E-value=0.00058 Score=38.31 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
.+.+|-+.++.+.=.|.|+|.++| .+....|.|+|.
T Consensus 31 ~~~tlnLGs~~~DPRG~Y~C~~s~-----~~~~~~LQVyYR 66 (69)
T cd07691 31 SNTLLDLGSRINDPRGTYSCKESE-----PNKEKTLQVYYR 66 (69)
T ss_pred cccEEeccCcccCCCcceEecCcc-----CCCcEEEEEEEE
Confidence 467899999999999999999988 345678888874
No 156
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.19 E-value=0.0002 Score=38.73 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.6
Q ss_pred CEEEEcccCCCCCeeeEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCV 39 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~ 39 (70)
-+|.|++++.+|+|.|.|.
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCCHHHCEEEEEc
Confidence 3799999999999999996
No 157
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.18 E-value=0.00081 Score=38.78 Aligned_cols=35 Identities=37% Similarity=0.446 Sum_probs=27.2
Q ss_pred EEEEcccCCCCCeeeEEEeEe----CCCcccceeEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN----GEGDGQSNAQKTAY 56 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N----~~G~~~s~~~~L~V 56 (70)
.+.|.+++.+|+|.|.|...- ..-+..|+++.|.|
T Consensus 56 ~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V 94 (94)
T cd05711 56 SFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV 94 (94)
T ss_pred EEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence 689999999999999998642 12356677877765
No 158
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.12 E-value=0.00067 Score=39.99 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEcccCCCCCeeeEEEeEeC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+|+|.+++.+|+|.|.|.+...
T Consensus 73 sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 73 SLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEECCCCHHHCEEEEEEEECC
Confidence 7999999999999999998853
No 159
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.08 E-value=0.00041 Score=40.75 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEcccCCCCCeeeEEEeEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N 42 (70)
+|+|.+++.+|+|.|.|.+..
T Consensus 78 ~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 78 TLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEEEECCHHHCEEEEEEEec
Confidence 799999999999999999875
No 160
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.03 E-value=0.00079 Score=33.52 Aligned_cols=26 Identities=38% Similarity=0.714 Sum_probs=23.1
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
...+|.|.+++.+|+|.|.|.+.+..
T Consensus 41 ~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 41 GSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred eEEEEEECccCcccCcEEEEEEecCc
Confidence 45689999999999999999999875
No 161
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.97 E-value=0.0022 Score=44.15 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=29.5
Q ss_pred cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeC
Q psy7035 4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
||+.|..+.. ..+-+.|.|++++...+++|.|+|.-+-.
T Consensus 21 ~g~~l~gn~~-~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 21 NGKPLSGNSY-VNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCcccCCCCe-EEEccCceEEeeccccccCCceEEEEEEE
Confidence 4555655543 34447889999999999999999987754
No 162
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.88 E-value=0.0047 Score=34.84 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred cccCeEcCcCccceEEecC-CE------EEEcccCCCCCeeeEEEeEeCCC--cccceeEEEEE
Q psy7035 2 SFSNVQLYNNISAGVIVSN-QS------LVLQNVSRARAGHYTCVGSNGEG--DGQSNAQKTAY 56 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~-~t------L~i~~v~~~D~G~Y~C~a~N~~G--~~~s~~~~L~V 56 (70)
++||++|...........+ ++ |.|......|...|+|.|.|... ...+....|+|
T Consensus 20 ~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~~ 83 (83)
T cd07705 20 RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIEV 83 (83)
T ss_pred EECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEeeC
Confidence 5788887643221111222 23 44545556777999999999864 34555666654
No 163
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.74 E-value=0.0061 Score=34.08 Aligned_cols=45 Identities=11% Similarity=-0.054 Sum_probs=26.9
Q ss_pred cccCeEcCcCccceEEe-cCC------EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 2 SFSNVQLYNNISAGVIV-SNQ------SLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~-~~~------tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
++||+++.... ..... .++ +|.+......|.+.|+|.|.|.....
T Consensus 20 ~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 20 FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 56788775332 22222 222 35555555566779999999986653
No 164
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.64 E-value=0.0018 Score=38.57 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred CEEEEcccCCCCCeeeEEEeEeC
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
-+|+|.+++.+|+|.|.|..+..
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcC
Confidence 37999999999999999987663
No 165
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.40 E-value=0.006 Score=34.19 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=27.7
Q ss_pred cccCeEcCcCcc-ce-EEecCC------EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 2 SFSNVQLYNNIS-AG-VIVSNQ------SLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 2 ~~ng~~l~~~~~-~~-~~~~~~------tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
++||+++..... .. ....++ +|.|......|.|.|+|.|.|...
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 35 LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 467777764432 11 122333 355555566699999999999754
No 166
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.15 E-value=0.0066 Score=36.21 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEcccCCCCCeeeEEEeEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N 42 (70)
+|+|.+++.+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 699999999999999998875
No 167
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.26 E-value=0.082 Score=29.81 Aligned_cols=45 Identities=7% Similarity=-0.077 Sum_probs=28.2
Q ss_pred cccCeEcCcCccceEEecC-------CEEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035 2 SFSNVQLYNNISAGVIVSN-------QSLVLQNVSRARAGHYTCVGSNGEGD 46 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~-------~tL~i~~v~~~D~G~Y~C~a~N~~G~ 46 (70)
++||+++...........+ .+|.|..-...|...|+|.+.|..-.
T Consensus 20 ~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 20 FKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 5788887543222222211 25777766677788999999997544
No 168
>KOG3515|consensus
Probab=95.16 E-value=0.0087 Score=46.10 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=46.9
Q ss_pred cccCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCC
Q psy7035 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLG 61 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~ 61 (70)
+|.+..+. .++..+.+.+|+.++..|..-+.|.|.|.|..|.....++.+.|.|+|-
T Consensus 43 ~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa 99 (741)
T KOG3515|consen 43 YHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPA 99 (741)
T ss_pred EecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCcc
Confidence 44444433 3455667889999999999999999999999999989999999998874
No 169
>PHA03376 BARF1; Provisional
Probab=94.71 E-value=0.064 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+|.|.+++-+|.|.|+|...-..
T Consensus 88 sLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 88 FLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred EEEEEeeeecCCceEEEEEEcCC
Confidence 79999999999999999877643
No 170
>PHA03282 envelope glycoprotein E; Provisional
Probab=94.08 E-value=0.21 Score=37.15 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=31.0
Q ss_pred EEecCCEEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeC
Q psy7035 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIG 59 (70)
Q Consensus 16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~ 59 (70)
+...|++|.|.+++.+|+|.|+-.....-.++ ....+.|.|.-.
T Consensus 119 vs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 119 VAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred eeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 44569999999999999999998764432222 233466777643
No 171
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.51 E-value=0.085 Score=32.19 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=17.9
Q ss_pred EEEEcccCCCCCeeeEEEe
Q psy7035 22 SLVLQNVSRARAGHYTCVG 40 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a 40 (70)
+|.|++++.+|++.|.|.-
T Consensus 75 ~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 75 NFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEcCCCHHHCeEEEEEe
Confidence 7999999999999999965
No 172
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.05 E-value=0.19 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=16.7
Q ss_pred CEEEEcccCCCCCeeeEEEeEeC
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
..+.+.+-. ++.|.|+|.+.+.
T Consensus 35 ~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 35 EKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred ceEEeeccC-CCCceEEEEeCCC
Confidence 355566666 9999999999754
No 173
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=91.62 E-value=0.31 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=18.8
Q ss_pred CEEEEcccCCCCCe-eeEEEeEeCCCc
Q psy7035 21 QSLVLQNVSRARAG-HYTCVGSNGEGD 46 (70)
Q Consensus 21 ~tL~i~~v~~~D~G-~Y~C~a~N~~G~ 46 (70)
.+|+|. ++++|-| .|+|.|.+..+.
T Consensus 62 stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 62 ATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred EEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 467776 4566666 999999998765
No 174
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.58 E-value=0.58 Score=35.17 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCC
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPA 64 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~ 64 (70)
.+-|.|.+++..++|.|+=..+|..+ ..-..+.|.|+-++..|+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~ 176 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQ 176 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCC
Confidence 35699999999999999999999877 444478888876444443
No 175
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=91.27 E-value=0.75 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+|.|......+...|+|.+.+..
T Consensus 49 ~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 49 YLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EEEEccccCCCCCEEEEEEEEcC
Confidence 45555556677789999998863
No 176
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.19 E-value=0.062 Score=39.20 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
.++.|.|.++++.|+|.|+=...|.-|......+.|.|.-.
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp -----------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 55789999999999999999999998888888888888753
No 177
>KOG3515|consensus
Probab=90.78 E-value=0.34 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=38.3
Q ss_pred cCeEcCcCccc-eEEecCCE-EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 4 SNVQLYNNISA-GVIVSNQS-LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 4 ng~~l~~~~~~-~~~~~~~t-L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
++-++.+..+. ..++.++- +-+.+|.+.|.|.|.|.|.|..|.+.- .+.+.+.+-|..
T Consensus 439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~-~~~~~~~~sp~~ 498 (741)
T KOG3515|consen 439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQA-YLLLGVHTSPHN 498 (741)
T ss_pred cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceee-EEeeccccCCcc
Confidence 34445443332 23334444 448899999999999999999997644 455677776643
No 178
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=90.68 E-value=1.1 Score=26.20 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.8
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
...+|.+.+++..|+|..+|..+-.
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEEC
Confidence 5569999999999999999988643
No 179
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.45 E-value=2 Score=24.26 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=25.9
Q ss_pred eEEecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 15 GVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 15 ~~~~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
..+-....+.....+..|+|..+|.|+...-......+.|.|
T Consensus 37 k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 37 KSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred cccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 333344556777778999999999995332222333444444
No 180
>KOG4597|consensus
Probab=89.44 E-value=0.42 Score=35.73 Aligned_cols=40 Identities=33% Similarity=0.347 Sum_probs=31.7
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
+-..|.|-+....|+|-|+|.|+|..|...- .+.+.+.-+
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~r-dv~c~s~~g 294 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRR-DVPCSSVKG 294 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeec-cceeeeecc
Confidence 3457999999999999999999999997544 355555544
No 181
>PHA02982 hypothetical protein; Provisional
Probab=89.24 E-value=1 Score=30.66 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=27.2
Q ss_pred ecCCEEEEcccCCCCCeeeEEEeEeCCCcccc
Q psy7035 18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49 (70)
Q Consensus 18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s 49 (70)
..+.||+|.++.-...|=|+|.|+...+..+.
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~ 128 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEET 128 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCCchhe
Confidence 46679999999999999999999997765443
No 182
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=89.14 E-value=0.26 Score=30.68 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
+|.|.... .=.|.|+|++.....+.+. .+.|.+
T Consensus 87 SL~~~~~~-a~~GnYTCeVt~~~~ege~-~i~Lk~ 119 (130)
T PF08204_consen 87 SLKMDKSD-AVEGNYTCEVTELSREGET-TIELKY 119 (130)
T ss_dssp -EEEEHHH-HH-EEEEEEEEETTEEEEE-EEEEEE
T ss_pred EEEEcchh-ccccceEEEEEecCCCceE-EEEEEE
Confidence 57777743 3389999999986554322 445544
No 183
>PHA03286 envelope glycoprotein E; Provisional
Probab=88.50 E-value=1.5 Score=32.55 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=33.6
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+-|.|.|++..++|.|+=..+|.-|....+.+.+.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 5699999999999999999999988877778888986
No 184
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=86.60 E-value=0.94 Score=26.33 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=22.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC-CcccceeEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE-GDGQSNAQKTA 55 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~-G~~~s~~~~L~ 55 (70)
+|.+..-...|.-.|+|.|+|.. .+..+.++.|.
T Consensus 60 ~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l~ 94 (95)
T cd07703 60 EYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTLS 94 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEEe
Confidence 57776666777788999999973 33344444444
No 185
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=86.59 E-value=1.1 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=22.4
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTA 55 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~ 55 (70)
+|.+..-...|.-.|+|.+.|..- .....++.|.
T Consensus 60 ~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 60 EYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred EEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 566766666777789999999753 2333344444
No 186
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=85.51 E-value=1.9 Score=24.94 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=23.1
Q ss_pred cccCeEcCcCccc-eEEe-cCCEEEEc---ccCCCCCeeeEEEeEeC
Q psy7035 2 SFSNVQLYNNISA-GVIV-SNQSLVLQ---NVSRARAGHYTCVGSNG 43 (70)
Q Consensus 2 ~~ng~~l~~~~~~-~~~~-~~~tL~i~---~v~~~D~G~Y~C~a~N~ 43 (70)
++||+++. +... .... .+++..+. .++..+...|+|.+...
T Consensus 37 ~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 37 LKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred EECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 57888876 3221 1221 23332221 23567778899999984
No 187
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=84.99 E-value=4.9 Score=23.83 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=23.1
Q ss_pred cccCeEcCcCccceEEe-cC-------CEEEEcccCCCCCee-eEEEeEeCC
Q psy7035 2 SFSNVQLYNNISAGVIV-SN-------QSLVLQNVSRARAGH-YTCVGSNGE 44 (70)
Q Consensus 2 ~~ng~~l~~~~~~~~~~-~~-------~tL~i~~v~~~D~G~-Y~C~a~N~~ 44 (70)
++||+++..... .... .+ .+|.+. ..+.|.|. |+|.+.+..
T Consensus 43 ~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 43 LKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 578888754221 1111 12 134444 35566555 999999963
No 188
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=83.19 E-value=2.4 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.0
Q ss_pred ccCCCCCeeeEEEeEeCC
Q psy7035 27 NVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 27 ~v~~~D~G~Y~C~a~N~~ 44 (70)
.++..|.+.|+|.+.+..
T Consensus 66 ~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 66 EVPPEDKARYSCRVEHSG 83 (93)
T ss_pred EECCCCCCEEEEEEEeCC
Confidence 345568899999999863
No 189
>PHA03042 CD47-like protein; Provisional
Probab=81.77 E-value=4.6 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=17.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDG 47 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~ 47 (70)
+|.+... ++=.|+|+|+|.+..-+.
T Consensus 72 SL~~~f~-~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 72 SLKFNFS-KNLSGNYTCEAINKFNKI 96 (286)
T ss_pred EEEEecc-ccCCCceeEEEeecccCc
Confidence 3666554 566899999999864443
No 190
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=80.86 E-value=5.1 Score=23.24 Aligned_cols=10 Identities=10% Similarity=0.527 Sum_probs=8.1
Q ss_pred eeEEEeEeCC
Q psy7035 35 HYTCVGSNGE 44 (70)
Q Consensus 35 ~Y~C~a~N~~ 44 (70)
.|+|.+....
T Consensus 76 ~ysC~V~H~g 85 (96)
T cd07697 76 KFRCIYKHEG 85 (96)
T ss_pred eEEEEEEECC
Confidence 4999999853
No 191
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=80.24 E-value=4.5 Score=29.98 Aligned_cols=36 Identities=14% Similarity=0.355 Sum_probs=24.5
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
+..+.|++++|.|.|.|.-.-.-.+..--.+.+.|.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVm 117 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKA 117 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEc
Confidence 577888999999999997765433333334555543
No 192
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=76.46 E-value=4 Score=23.49 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=23.7
Q ss_pred cccCeEcCcCccc-eEEe-cCC------EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 2 SFSNVQLYNNISA-GVIV-SNQ------SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 2 ~~ng~~l~~~~~~-~~~~-~~~------tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
++||+++..+... .... .++ .|.+..-...+...|+|.+.+..
T Consensus 39 ~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 39 KVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred EECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 4688887532111 1111 244 34454444445679999999963
No 193
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=75.75 E-value=4.4 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=17.2
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
+|.|..-...+.+.|+|.+.+..-
T Consensus 109 ~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 109 HLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EEEecCCccCCCCEEEEEEEcCCC
Confidence 566665555567799999998643
No 194
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=75.29 E-value=9.4 Score=21.92 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=11.1
Q ss_pred CCCCeeeEEEeEeC
Q psy7035 30 RARAGHYTCVGSNG 43 (70)
Q Consensus 30 ~~D~G~Y~C~a~N~ 43 (70)
+.+...|+|.+...
T Consensus 70 ~~~~~~ytC~V~H~ 83 (94)
T cd05767 70 PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCCeEEEEEEeC
Confidence 45666999999985
No 195
>KOG3611|consensus
Probab=75.09 E-value=4.1 Score=31.83 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=29.3
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI 58 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~ 58 (70)
.+|-|.+..+++.|.|.|.|.+....-....-.+.+++..
T Consensus 610 ~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~~ 649 (737)
T KOG3611|consen 610 DEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVAR 649 (737)
T ss_pred ccCceeEEEEeeccCcccccccccCccccceEEEeeeecC
Confidence 4566899999999999999999886554444445555543
No 196
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=73.15 E-value=20 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCCeee--EEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035 31 ARAGHY--TCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66 (70)
Q Consensus 31 ~D~G~Y--~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p 66 (70)
...|.| +.+..|..|...|.++.+.|...=+-...|
T Consensus 80 ~~gG~y~~~VeLCN~~GCS~S~~~~V~VaDTDGsHl~p 117 (133)
T PF08329_consen 80 TKGGRYQMQVELCNADGCSTSAPVEVVVADTDGSHLAP 117 (133)
T ss_dssp -S-EEEEEEEEEEETTEEEE---EEEEEE-TTSTTS--
T ss_pred cCCCEEEEEEEEECCCCcccCCCEEEEEeCCCcccccc
Confidence 456776 667889999999999999998554444444
No 197
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=71.16 E-value=15 Score=19.98 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=14.6
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
.|.+. ..+...|+|.+.+...
T Consensus 58 ~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 58 SLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp EEEEE---TTTTGGEEEEEEETTS
T ss_pred EEEec---CCCCCEEEEEEEECCC
Confidence 35554 5566689999998644
No 198
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=71.03 E-value=2.7 Score=31.12 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.2
Q ss_pred ecCCEEEEcccCCCCCeeeEEEeEeC
Q psy7035 18 VSNQSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+.+.||+|.++.=+.+|=|+|.|...
T Consensus 343 lk~STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 343 LKNSTLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred hhhceEEeeeEEEEcCCceEEEEecC
Confidence 45689999999999999999999865
No 199
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=70.74 E-value=15 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=12.0
Q ss_pred CCCCCeeeEEEeEeCC
Q psy7035 29 SRARAGHYTCVGSNGE 44 (70)
Q Consensus 29 ~~~D~G~Y~C~a~N~~ 44 (70)
...+...|+|.+....
T Consensus 68 ~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 68 TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCCEEEEEEEeCC
Confidence 3456668999999964
No 200
>COG5475 Uncharacterized small protein [Function unknown]
Probab=70.69 E-value=7.7 Score=21.00 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=18.4
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCccc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQ 48 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~ 48 (70)
..++...+.+ |.|.|.+.|..|...
T Consensus 19 ~Mtvs~~ss~--Gmy~C~Wf~g~g~~~ 43 (60)
T COG5475 19 RMTVSGYSSD--GMYECRWFDGYGVKR 43 (60)
T ss_pred eEEEeccccC--CeEEEEEecCCCccc
Confidence 5666666443 999999999988443
No 201
>PHA03281 envelope glycoprotein E; Provisional
Probab=70.46 E-value=15 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=32.1
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~ 59 (70)
..+-|.|.+++..++|.|+=.....-|...-..+.+.|+-.
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~ 336 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGD 336 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCC
Confidence 45689999999999999998888666654444777888743
No 202
>PHA03286 envelope glycoprotein E; Provisional
Probab=69.80 E-value=6.4 Score=29.40 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.0
Q ss_pred eEEecCC-EEEEcccCCCCCeeeEEEeEe
Q psy7035 15 GVIVSNQ-SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 15 ~~~~~~~-tL~i~~v~~~D~G~Y~C~a~N 42 (70)
.++.+.. +|.|.|+..+|+|.|.|.+.=
T Consensus 300 a~l~~~i~nL~f~nA~~s~SGLYVfVl~y 328 (492)
T PHA03286 300 AFLESDIPSFRLANAQPTDAGLYVVVALY 328 (492)
T ss_pred eeeccCCCceeecCCCcccCceEEEEEEE
Confidence 3443333 799999999999999998764
No 203
>PHA03269 envelope glycoprotein C; Provisional
Probab=69.73 E-value=16 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC--CcccceeEEEEEEeCCCC--CCCCc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE--GDGQSNAQKTAYDIGLGI--PAEPL 67 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~--G~~~s~~~~L~V~~~p~~--~~~p~ 67 (70)
.|+|.+++-+++|.|+=...+.. ....+..+++.++..|.+ -+.|+
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PV 339 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPV 339 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCcc
Confidence 59999999999999986554322 233456788999988864 44443
No 204
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=62.49 E-value=9 Score=22.75 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=17.3
Q ss_pred EEEEcccCCCCCe-eeEEEeEeCCC
Q psy7035 22 SLVLQNVSRARAG-HYTCVGSNGEG 45 (70)
Q Consensus 22 tL~i~~v~~~D~G-~Y~C~a~N~~G 45 (70)
.++|.. +++|.| .|+|.|.=.++
T Consensus 64 ~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 64 EVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred eEEEec-chhhCCcEEEEEEEEeec
Confidence 566666 478888 99999997655
No 205
>PHA03282 envelope glycoprotein E; Provisional
Probab=61.82 E-value=7.8 Score=29.19 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEcccCCCCCeeeEEEeEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N 42 (70)
.|.|.|+..+++|.|.|+..=
T Consensus 334 dL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 799999999999999998763
No 206
>PHA03270 envelope glycoprotein C; Provisional
Probab=61.51 E-value=35 Score=25.53 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.7
Q ss_pred CEEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEEEEeCCCC--CCCCc
Q psy7035 21 QSLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTAYDIGLGI--PAEPL 67 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~V~~~p~~--~~~p~ 67 (70)
+.|+|+.++.+.+|.|+=..-|..+ ...+..+++..+..|.+ .+.|+
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~Pv 231 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAV 231 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCcc
Confidence 4599999999999999998666544 33445688888888864 44443
No 207
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=60.46 E-value=7.6 Score=28.49 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.3
Q ss_pred EEEEcccCCCCCeeeEEEeEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N 42 (70)
.|.|.|+...++|.|.|.+.=
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 699999999999999998764
No 208
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=59.19 E-value=18 Score=19.60 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=17.6
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGD 46 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~ 46 (70)
+|.+..-+..+.-.++|.|.|..-.
T Consensus 62 ~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 62 TLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp EEEEETTGGGTTEEEEEEEEETTCC
T ss_pred EEEEEcChHHCCeEEEEEEECCccC
Confidence 5777654455666779999997543
No 209
>PHA03271 envelope glycoprotein C; Provisional
Probab=59.00 E-value=53 Score=24.63 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=35.5
Q ss_pred ceEEecCC-----EEEEcccCCCCCeeeEEEeEeCCCccc-ceeEEEEEEeCCC---CCCCCcc
Q psy7035 14 AGVIVSNQ-----SLVLQNVSRARAGHYTCVGSNGEGDGQ-SNAQKTAYDIGLG---IPAEPLF 68 (70)
Q Consensus 14 ~~~~~~~~-----tL~i~~v~~~D~G~Y~C~a~N~~G~~~-s~~~~L~V~~~p~---~~~~p~~ 68 (70)
.+++..+. +|.|.+|.-+|.|.|+-...+...... .+.+.+.|.|.|. +.++|++
T Consensus 195 ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL 258 (490)
T PHA03271 195 KYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVL 258 (490)
T ss_pred eeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccc
Confidence 45665554 599999999999977554444333333 3357888888775 3555543
No 210
>KOG0200|consensus
Probab=57.78 E-value=12 Score=28.18 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.0
Q ss_pred EEecCCEEEEcccCCCCCeeeEEEeEe
Q psy7035 16 VIVSNQSLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 16 ~~~~~~tL~i~~v~~~D~G~Y~C~a~N 42 (70)
....+.++.+..+...|.|.|+|.+.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 8 TRINHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred eeeccceEEEEEEEecCCccEEEEEec
Confidence 345678999999999999999999999
No 211
>PHA03189 UL14 tegument protein; Provisional
Probab=56.91 E-value=12 Score=26.71 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=17.2
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
||+| +++.+-+|.|.|.-.|...
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEE-EEEecccceEEEEeccccc
Confidence 4554 3557789999999999743
No 212
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=56.34 E-value=35 Score=19.26 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=30.7
Q ss_pred EecCCEEEEccc-CCCCCeeeEE--EeEeCCCcccceeEEEEEEeC
Q psy7035 17 IVSNQSLVLQNV-SRARAGHYTC--VGSNGEGDGQSNAQKTAYDIG 59 (70)
Q Consensus 17 ~~~~~tL~i~~v-~~~D~G~Y~C--~a~N~~G~~~s~~~~L~V~~~ 59 (70)
.++..+++|... ..+|.|.|+= .|++..|...+..+.|.|.-.
T Consensus 49 ~fd~~~~~~~GtP~~~~~g~~~i~v~a~D~~g~~~~~~f~i~V~~~ 94 (97)
T smart00736 49 SFDSDTGTLSGTPTNSDVGSLSLKVTATDSSGASASDTFTITVVNT 94 (97)
T ss_pred EEeCCCCEEEEECCCCCCcEEEEEEEEEECCCCEEEEEEEEEEeCC
Confidence 345566777775 3346888854 788888888888888888743
No 213
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.97 E-value=12 Score=25.53 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=22.2
Q ss_pred EecCCEEEEcccCCCCCeeeEEEeEeC-CCc
Q psy7035 17 IVSNQSLVLQNVSRARAGHYTCVGSNG-EGD 46 (70)
Q Consensus 17 ~~~~~tL~i~~v~~~D~G~Y~C~a~N~-~G~ 46 (70)
.=.|.+|.|-+|.-+|+|+| |.-.+. .|.
T Consensus 101 ~C~NstL~i~~vn~sd~~nY-cr~k~~~~g~ 130 (258)
T PHA03240 101 ECHNSTLIIAHLNLSDAGEY-CRKKCPPKGD 130 (258)
T ss_pred EeccceEEEEEEeecCcchh-hhccCCCCCC
Confidence 34789999999999999999 444443 443
No 214
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=54.64 E-value=14 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=21.2
Q ss_pred CccceEEecCCEEEEcccCCCCCeeeEEE
Q psy7035 11 NISAGVIVSNQSLVLQNVSRARAGHYTCV 39 (70)
Q Consensus 11 ~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~ 39 (70)
.++..+-+.|=+|.|..-+++|.|-|.-.
T Consensus 93 edgY~FhlEnLsL~Il~SrkE~EGWYfmt 121 (126)
T PF06214_consen 93 EDGYKFHLENLSLEILESRKEDEGWYFMT 121 (126)
T ss_dssp SSSEEEETTTTEEEETT--GGG-EEEEEE
T ss_pred ccccEEecccceeehhccccccCceEEEE
Confidence 44566778889999999999999999654
No 215
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=50.64 E-value=57 Score=21.00 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=26.2
Q ss_pred ecCCE-EEEcccCCCCCeeeEEEeEeCCCcccceeEEEEE
Q psy7035 18 VSNQS-LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 18 ~~~~t-L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V 56 (70)
.+++. |.|.+-+.+|+|.|.=..+=.- ...++-+.+.|
T Consensus 120 ~~~~~lL~i~~p~~~dsG~Y~lRV~l~~-~~~~d~F~~~v 158 (161)
T PF01688_consen 120 PENGVLLRIRNPRPEDSGIYYLRVWLDG-ANKADVFRLSV 158 (161)
T ss_pred CCcceEEEeCCCCcccceEEEEEEEECC-CCCCcEEEEee
Confidence 45565 9999999999999998766432 33444444444
No 216
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=50.47 E-value=24 Score=20.66 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=22.2
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCC-cccceeEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEG-DGQSNAQKTA 55 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G-~~~s~~~~L~ 55 (70)
+|.+..-++.|.-.++|.+.+..- .....+..|+
T Consensus 62 ~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~~~L~ 96 (97)
T cd07704 62 EYIWVPSRHANGHPLTCVVSHPALQQDFRITHILN 96 (97)
T ss_pred EEEEEeCHHHCCcEEEEEEeCcccCCCceeeEEee
Confidence 566666677788899999999733 2333344444
No 217
>PHA03291 envelope glycoprotein I; Provisional
Probab=48.38 E-value=87 Score=22.96 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=26.3
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE-eCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD-IGL 60 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~-~~p 60 (70)
-|.|.+-..+|+|.|.-..+=.-.. ..+-+.|.+. +.+
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat-~adlF~lg~~~~~~ 168 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGAT-NASLFPLGLAAFPA 168 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCc-ccceEEEeeeeeCC
Confidence 5899999999999999977654332 2334555555 444
No 218
>PHA03283 envelope glycoprotein E; Provisional
Probab=47.79 E-value=20 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.2
Q ss_pred CEEEEcccCCCCCeeeEEEeE
Q psy7035 21 QSLVLQNVSRARAGHYTCVGS 41 (70)
Q Consensus 21 ~tL~i~~v~~~D~G~Y~C~a~ 41 (70)
-.|.|.++..+++|.|.|...
T Consensus 315 v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 315 VDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred cceEeccCCcccCceEEEEEE
Confidence 379999999999999999876
No 219
>PHA03273 envelope glycoprotein C; Provisional
Probab=47.61 E-value=66 Score=24.25 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=30.4
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcc-cceeEEEEEEeCCCC--CCCCc
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDG-QSNAQKTAYDIGLGI--PAEPL 67 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~-~s~~~~L~V~~~p~~--~~~p~ 67 (70)
.|+|..++.+++|.|+=...+.-|.. .+..+++..+..|.+ .+.|+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~Pv 247 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPS 247 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCcc
Confidence 49999999999999985544543322 234566666777754 44443
No 220
>PHA02786 uncharacterized protein; Provisional
Probab=43.34 E-value=76 Score=20.53 Aligned_cols=42 Identities=12% Similarity=-0.051 Sum_probs=29.6
Q ss_pred EcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCC
Q psy7035 25 LQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEP 66 (70)
Q Consensus 25 i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p 66 (70)
.-.+.+.|+|.|+-...-..-...++...+.|...|+--..|
T Consensus 41 ~~~m~~~~q~~YT~~S~~~~~~i~t~~W~i~vlsT~~~LDiP 82 (192)
T PHA02786 41 LVSLFRDDQKDYTVTSQFNNYTIDTKDWTINVLSTPDGLDIP 82 (192)
T ss_pred EEEEccCccCceEEEeeeeeeEecccceEEEeeeccccccCc
Confidence 345689999999875544444456778888988777665555
No 221
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=42.20 E-value=56 Score=21.20 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.3
Q ss_pred cCC--EEEEcccCCCCCeeeEEEeE
Q psy7035 19 SNQ--SLVLQNVSRARAGHYTCVGS 41 (70)
Q Consensus 19 ~~~--tL~i~~v~~~D~G~Y~C~a~ 41 (70)
.++ +++++.|...-+|.|+|..-
T Consensus 89 ~gG~i~mt~hQVN~DGaGP~~C~iD 113 (184)
T PF11327_consen 89 AGGSISMTIHQVNADGAGPFTCDID 113 (184)
T ss_pred CCCEEEEEEEEecCCCCcCeEEEEC
Confidence 455 46888999888999999754
No 222
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=41.53 E-value=50 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=20.5
Q ss_pred CCCCCeeeEE--EeEeCCCcccceeEEEEE
Q psy7035 29 SRARAGHYTC--VGSNGEGDGQSNAQKTAY 56 (70)
Q Consensus 29 ~~~D~G~Y~C--~a~N~~G~~~s~~~~L~V 56 (70)
...++|.|.| .+....|........+.|
T Consensus 102 a~a~~G~YH~~i~VtD~~Gn~~~~~~~i~I 131 (132)
T PF15418_consen 102 ADAPAGDYHFMITVTDAAGNQTEEERSIKI 131 (132)
T ss_pred CCCCCcceEEEEEEEECCCCEEEEEEEEEE
Confidence 3589999999 456778876666666655
No 223
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=40.41 E-value=34 Score=19.49 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=14.5
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
.|.+..-...+...|+|.+.+..
T Consensus 64 ~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 64 ELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEchHHhcCCCeEEEEEEECC
Confidence 34444333345679999999853
No 224
>PHA03281 envelope glycoprotein E; Provisional
Probab=39.32 E-value=36 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred EEEEcccCCCCCeeeEEEeEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSN 42 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N 42 (70)
.|.|.++..+++|.|.|+..=
T Consensus 476 dL~F~nApasaSGLYVfVl~y 496 (642)
T PHA03281 476 ALKFVDAAESLSGLYVFIIHF 496 (642)
T ss_pred ceEeccCCcccCceEEEEEEE
Confidence 699999999999999998763
No 225
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=37.50 E-value=96 Score=21.33 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=29.8
Q ss_pred ecCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCCCCCCcc
Q psy7035 18 VSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF 68 (70)
Q Consensus 18 ~~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~ 68 (70)
.+++++++.+-... |.++|.+.= |+.++|.-+.+.|..|.+
T Consensus 151 ~dg~~v~v~R~le~--g~e~~e~~L--------PaVvtv~~~~n~PR~psl 191 (260)
T COG2086 151 VDGGKVTVERELEG--GLETVEAPL--------PAVVTVDLRINEPRYPSL 191 (260)
T ss_pred cCCCeEEEEEEcCC--ceEEEEccC--------CEEEEeccccCCCCCCCH
Confidence 46668888766444 888998754 678888877777777764
No 226
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=36.62 E-value=53 Score=22.12 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.5
Q ss_pred EEEcccCCCCCeeeEEEeEeCCC
Q psy7035 23 LVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
.+++.-+..++|+|+|.+++..+
T Consensus 172 Vi~H~G~s~~sGHYva~vr~~~~ 194 (241)
T cd02670 172 AVCHRGTSLETGHYVAFVRYGSY 194 (241)
T ss_pred EEEeCCCCCCCcCeEEEEECCcc
Confidence 33344455699999999998753
No 227
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=36.50 E-value=66 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=15.8
Q ss_pred EEEEcccCCCCCeeeEEEeEeCC
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
.++++.- ..+.|+|.|.+.+..
T Consensus 215 avi~H~G-~~~~GHY~a~v~~~~ 236 (269)
T PF00443_consen 215 AVIVHYG-SADSGHYVAYVRDSD 236 (269)
T ss_dssp EEEEEES-STTSEEEEEEEEETT
T ss_pred hhhcccc-ccccceEEEeecccc
Confidence 3444444 689999999998754
No 228
>KOG3486|consensus
Probab=35.46 E-value=20 Score=20.72 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=15.7
Q ss_pred EEEeEeC-CCcccceeEEEEEE
Q psy7035 37 TCVGSNG-EGDGQSNAQKTAYD 57 (70)
Q Consensus 37 ~C~a~N~-~G~~~s~~~~L~V~ 57 (70)
.|.++|- ++.-.+.++++++-
T Consensus 16 KcS~sNriI~aKDHaSVQ~N~~ 37 (83)
T KOG3486|consen 16 KCSATNRIITAKDHASVQLNIG 37 (83)
T ss_pred cccccceeeecccchheeeccc
Confidence 6899995 56666777888764
No 229
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=35.29 E-value=68 Score=21.82 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=14.4
Q ss_pred EcccCCCCCeeeEEEeEeCC
Q psy7035 25 LQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 25 i~~v~~~D~G~Y~C~a~N~~ 44 (70)
.+.-+..++|+|+|.+++..
T Consensus 253 ~H~G~~~~~GHY~~~~k~~~ 272 (324)
T cd02668 253 IHQGVSAYSGHYIAHIKDEQ 272 (324)
T ss_pred EEcCCCCCCEeeEEEEECCC
Confidence 33334569999999999754
No 230
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=31.54 E-value=62 Score=22.16 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=14.5
Q ss_pred EcccCCCCCeeeEEEeEeCC
Q psy7035 25 LQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 25 i~~v~~~D~G~Y~C~a~N~~ 44 (70)
.+.-+..|+|+|+|.++...
T Consensus 250 ~H~G~~~~~GHY~a~~r~~~ 269 (327)
T cd02664 250 VHSGYSSESGHYFTYARDQT 269 (327)
T ss_pred EEccCCCCCcceEEEEecCC
Confidence 33334579999999998753
No 231
>PHA03290 envelope glycoprotein I; Provisional
Probab=31.41 E-value=1.9e+02 Score=21.08 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=24.8
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI 58 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~ 58 (70)
-|.|.+-+.+|+|.|.-..+=. |...++-+.+.+..
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ld-ga~~sDvF~lsv~V 165 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLD-HSRLFDGFFLGLNV 165 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeC-CCcccceEEEEEEE
Confidence 5899999999999999877643 22234444454443
No 232
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=30.92 E-value=30 Score=20.60 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.4
Q ss_pred CCEEEEcccCCCCCeeeEEEeE
Q psy7035 20 NQSLVLQNVSRARAGHYTCVGS 41 (70)
Q Consensus 20 ~~tL~i~~v~~~D~G~Y~C~a~ 41 (70)
-.+|.|-|+++.+.|.|--.-+
T Consensus 59 HtsL~lCN~T~g~eg~ydl~r~ 80 (98)
T PF11088_consen 59 HTSLTLCNMTQGNEGVYDLGRR 80 (98)
T ss_pred CCcEEEEeeeccCcccEeeeee
Confidence 3579999999999999977544
No 233
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=30.81 E-value=44 Score=19.20 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=13.7
Q ss_pred EEEcccCCCCCeeeEEEeEeCC
Q psy7035 23 LVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
|.|..-...+...|+|.+....
T Consensus 70 L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 70 LTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred EEEcHHHhcCCCcEEEEeEeCC
Confidence 4443333345568999999863
No 234
>COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase [Lipid metabolism]
Probab=29.97 E-value=75 Score=20.49 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=19.2
Q ss_pred CeeeEEEeEeCCCcccceeEEEEEEeCCCCCCC
Q psy7035 33 AGHYTCVGSNGEGDGQSNAQKTAYDIGLGIPAE 65 (70)
Q Consensus 33 ~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~~~~ 65 (70)
-|.|.|..+ ..|...+.-+.+.+.-+...|..
T Consensus 123 ~g~f~csir-~d~~~~~r~av~~~~a~~~~p~~ 154 (161)
T COG4706 123 FGSFECSIR-NDGEATGRIAVFQPTAEELTPLF 154 (161)
T ss_pred ceEEEEEEc-cCchhhccceeEeecccccchhh
Confidence 479999999 44555555555555544444433
No 235
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.42 E-value=17 Score=20.04 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=2.4
Q ss_pred EEEEcccCCCCCeeeEE
Q psy7035 22 SLVLQNVSRARAGHYTC 38 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C 38 (70)
.|.|...++.|.|.|.-
T Consensus 30 lf~iyR~rkkdEGSY~l 46 (64)
T PF01034_consen 30 LFLIYRMRKKDEGSYDL 46 (64)
T ss_dssp -------S------SS-
T ss_pred HHHHHHHHhcCCCCccC
Confidence 46778889999999954
No 236
>PHA03289 envelope glycoprotein I; Provisional
Probab=29.01 E-value=2e+02 Score=20.86 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=25.1
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEE
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~ 57 (70)
-|.|.+-+.+|+|.|.=..+=.-. ..++-+.|.|.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga-~~sDvF~lsv~ 157 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGR-NKSDIFRTSVF 157 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCC-ccCceEEEEEE
Confidence 689999999999999987765422 34445555544
No 237
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.08 E-value=42 Score=18.23 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.8
Q ss_pred cCCEEEEcccCCCCCe
Q psy7035 19 SNQSLVLQNVSRARAG 34 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G 34 (70)
.+..|+|-+|++.+.|
T Consensus 48 n~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 48 NGQNLTLINVTKTYNG 63 (63)
T ss_pred cCCeEEEEEecccccC
Confidence 5778999999998876
No 238
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=27.26 E-value=64 Score=21.05 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=11.5
Q ss_pred CCCeeeEEEeEeC
Q psy7035 31 ARAGHYTCVGSNG 43 (70)
Q Consensus 31 ~D~G~Y~C~a~N~ 43 (70)
.+.|+|.|.++..
T Consensus 175 ~~~GHY~~~~k~~ 187 (240)
T cd02662 175 HSSGHYVCYRRKP 187 (240)
T ss_pred CCCceEEEEEeCC
Confidence 4999999999886
No 239
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=27.03 E-value=2e+02 Score=19.16 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEec-CCEEEEcccCCCCCeeeEEEeEeCCC
Q psy7035 16 VIVS-NQSLVLQNVSRARAGHYTCVGSNGEG 45 (70)
Q Consensus 16 ~~~~-~~tL~i~~v~~~D~G~Y~C~a~N~~G 45 (70)
+.++ +|.|+|.- ++++.|.|+|..-.+.+
T Consensus 48 ~~v~~dG~L~I~a-~~~~~~~ytSg~i~s~~ 77 (259)
T cd02182 48 VQLSGNGTLQITP-LRDGSGKWTSGRIETTR 77 (259)
T ss_pred EEEcCCCeEEEEE-EecCCCCEEEEEEEECC
Confidence 4456 89999984 45557889887666544
No 240
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=26.08 E-value=1.3e+02 Score=16.63 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=9.7
Q ss_pred eeEEEEEEeCCCCC
Q psy7035 50 NAQKTAYDIGLGIP 63 (70)
Q Consensus 50 ~~~~L~V~~~p~~~ 63 (70)
....+.+-|.|++|
T Consensus 40 ~~~~~~AWyT~eIP 53 (70)
T PF09697_consen 40 KGRTIEAWYTPEIP 53 (70)
T ss_pred CCcEEEEEECCCCC
Confidence 34677888888764
No 241
>PF15660 Imm49: Immunity protein 49
Probab=25.78 E-value=51 Score=18.41 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=17.2
Q ss_pred EEeEeCCCcccceeEEEEEEeCCCCCCCCcc
Q psy7035 38 CVGSNGEGDGQSNAQKTAYDIGLGIPAEPLF 68 (70)
Q Consensus 38 C~a~N~~G~~~s~~~~L~V~~~p~~~~~p~~ 68 (70)
-+..-++|+ .++| |+++|+..+-|.|
T Consensus 34 lmvttsvge----earl-vyfnpdfagtptf 59 (84)
T PF15660_consen 34 LMVTTSVGE----EARL-VYFNPDFAGTPTF 59 (84)
T ss_pred EEEEeccCc----eeEE-EEeCCCcCCCcch
Confidence 344455554 3444 5789999999987
No 242
>KOG1865|consensus
Probab=24.94 E-value=79 Score=24.22 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.6
Q ss_pred CCCCCeeeEEEeEeCCC
Q psy7035 29 SRARAGHYTCVGSNGEG 45 (70)
Q Consensus 29 ~~~D~G~Y~C~a~N~~G 45 (70)
...+.|+|.|.++..-|
T Consensus 363 ~~~~~GHY~cYvks~~g 379 (545)
T KOG1865|consen 363 TSCHSGHYFCYVKSQNG 379 (545)
T ss_pred ccccCCceEEEEEcCCC
Confidence 44999999999998776
No 243
>PF09134 Invasin_D3: Invasin, domain 3; InterPro: IPR015217 This domain adopts a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, arranged in a Greek-key topology. It forms part of the extracellular region of the protein, which can be expressed as a soluble protein (Inv497) that binds integrins and promotes subsequent uptake by cells when attached to bacteria []. ; PDB: 1CWV_A.
Probab=24.40 E-value=54 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=14.3
Q ss_pred cCeEcCcCccceEEecCCEEEEcccCCCCCeeeEEEeE
Q psy7035 4 SNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGS 41 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~~tL~i~~v~~~D~G~Y~C~a~ 41 (70)
+|+++..-.+..+..++--++|..+++. .|.|+-..+
T Consensus 33 ~g~pvsGl~~l~f~~~g~~vtls~itE~-~GvYtATl~ 69 (99)
T PF09134_consen 33 NGNPVSGLSVLAFVQDGVPVTLSPITEN-PGVYTATLK 69 (99)
T ss_dssp TS-B--S--SEEEEEEES--EE---EE--SS-EEEEEE
T ss_pred CCCcccCceeEEEEccCCCcEEcccccc-CCEEEEEEE
Confidence 4566643223344444445888888775 499987544
No 244
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=23.94 E-value=1.1e+02 Score=20.03 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=14.3
Q ss_pred EEcccCCCCCeeeEEEeEeCC
Q psy7035 24 VLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 24 ~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
+.+.-+..++|+|.|.+.+..
T Consensus 254 i~H~G~~~~~GHY~~~~~~~~ 274 (304)
T cd02661 254 LVHSGFSPHSGHYYCYVKSSN 274 (304)
T ss_pred EEECCCCCCCcCCEEEEECCC
Confidence 333334459999999998743
No 245
>PHA02935 Hypothetical protein; Provisional
Probab=23.49 E-value=66 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=25.7
Q ss_pred EEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEe
Q psy7035 22 SLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDI 58 (70)
Q Consensus 22 tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~ 58 (70)
-|-|..++-+|+|.|.-...-.-|.....++.+.|+.
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvka 139 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKA 139 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEe
Confidence 4667777889999998666555665555566666653
No 246
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=22.38 E-value=1.2e+02 Score=18.40 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=15.3
Q ss_pred EEEcccCCCCCeeeEEEeEeCC
Q psy7035 23 LVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
++++.-...++|+|.|.+++..
T Consensus 198 vi~h~G~~~~~GHY~~~~~~~~ 219 (255)
T cd02257 198 VVVHSGTSADSGHYVAYVKDPS 219 (255)
T ss_pred EEEEecCCCCCcCeEEEEeCCC
Confidence 3334334459999999998863
No 247
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=22.27 E-value=2.1e+02 Score=17.83 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEecC-CEEEEcccCCCCCeeeEEEeEeC
Q psy7035 16 VIVSN-QSLVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 16 ~~~~~-~tL~i~~v~~~D~G~Y~C~a~N~ 43 (70)
+.+++ |.|.|.-......|.|+|..-.+
T Consensus 32 v~~~~~G~L~l~~~~~~~~~~~~sg~i~s 60 (210)
T cd00413 32 VYVENDGGLTLRTDRDQTDGPYSSAEIDS 60 (210)
T ss_pred EEEeCCCeEEEEEEecCCCCceEeEEEEe
Confidence 34555 88888876554458898866554
No 248
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=22.16 E-value=1.3e+02 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.0
Q ss_pred CCCCCeeeEEEeEeCC
Q psy7035 29 SRARAGHYTCVGSNGE 44 (70)
Q Consensus 29 ~~~D~G~Y~C~a~N~~ 44 (70)
+..+.|+|.|.++...
T Consensus 252 ~~~~~GHY~~~~~~~~ 267 (305)
T cd02657 252 RSADSGHYVAWVRRKN 267 (305)
T ss_pred CCCCCcEEEEEEEcCC
Confidence 4568999999998864
No 249
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=21.95 E-value=1.2e+02 Score=16.32 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=21.2
Q ss_pred cCCEEEEcccCCCCCeeeEEEeEeCCCcccceeEEEEEEeCCCC
Q psy7035 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYDIGLGI 62 (70)
Q Consensus 19 ~~~tL~i~~v~~~D~G~Y~C~a~N~~G~~~s~~~~L~V~~~p~~ 62 (70)
.+..+.|. .+|++.|.|.... .+.|+.||..
T Consensus 7 ~~S~v~I~---~Ae~dlY~A~Id~----------kv~~KiGp~~ 37 (61)
T smart00810 7 SRSSLKIL---AAEADLYVAMIDE----------KVIMKIGPRY 37 (61)
T ss_pred CCCceEEE---EecCCcEEEEeCC----------eEEEEECCCC
Confidence 34455554 4678899988766 5777888853
No 250
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=20.67 E-value=89 Score=17.77 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=13.2
Q ss_pred EEEcccCCCCCeeeEEEeEeCC
Q psy7035 23 LVLQNVSRARAGHYTCVGSNGE 44 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a~N~~ 44 (70)
|.+..-...+.-.|+|.+.+..
T Consensus 65 l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 65 LNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred EEeCHHHccCCCcEEEEEECCC
Confidence 4444333233457999999963
No 251
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=20.42 E-value=1e+02 Score=20.46 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=13.9
Q ss_pred EEEcccCCCCCeeeEEEeEeC
Q psy7035 23 LVLQNVSRARAGHYTCVGSNG 43 (70)
Q Consensus 23 L~i~~v~~~D~G~Y~C~a~N~ 43 (70)
.+++.-+. +.|+|+|.++..
T Consensus 207 vi~H~G~~-~~GHY~a~v~~~ 226 (279)
T cd02667 207 VVEHSGTM-RSGHYVAYVKVR 226 (279)
T ss_pred EEEEeCCC-CCCEeEEEEEcC
Confidence 33444444 999999998864
No 252
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=20.15 E-value=82 Score=22.06 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.7
Q ss_pred ccceEEecCCEEEEcccCCCCCeeeEE
Q psy7035 12 ISAGVIVSNQSLVLQNVSRARAGHYTC 38 (70)
Q Consensus 12 ~~~~~~~~~~tL~i~~v~~~D~G~Y~C 38 (70)
..+-.++++.+=.|.+|+-.|+|.|+-
T Consensus 64 ~n~fcI~den~qEILSvt~dda~~YTV 90 (292)
T PRK15372 64 ENYFCILDEDSQEILSVTLDDVGNYTV 90 (292)
T ss_pred CceEEEEcCCCceeEEEEEcCCCceEE
Confidence 345677788888888999999999974
No 253
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=20.04 E-value=51 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.4
Q ss_pred CCCCCeeeEEEe
Q psy7035 29 SRARAGHYTCVG 40 (70)
Q Consensus 29 ~~~D~G~Y~C~a 40 (70)
-..|+|.|-|-.
T Consensus 133 ~S~dAG~YlCn~ 144 (194)
T cd00501 133 VSNDAGTYLCNH 144 (194)
T ss_pred EcCCCCceeeHH
Confidence 368999999943
No 254
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=20.02 E-value=1e+02 Score=19.62 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=12.2
Q ss_pred cCeEcCcCccceEEecCCEEEEc
Q psy7035 4 SNVQLYNNISAGVIVSNQSLVLQ 26 (70)
Q Consensus 4 ng~~l~~~~~~~~~~~~~tL~i~ 26 (70)
+|+++.+...+.+..++||++++
T Consensus 58 ~g~~~~eSNAriVrWsDGS~sL~ 80 (171)
T PF04004_consen 58 TGEKVKESNARIVRWSDGSLSLH 80 (171)
T ss_pred CCCEeeecccEEEEEcCCceEEE
Confidence 45554443344555677765543
Done!