RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7035
(70 letters)
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 34.7 bits (79), Expect = 1e-04
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
V++ LV++ V G+Y C +N GD
Sbjct: 49 ATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 85
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 34.3 bits (77), Expect = 2e-04
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
V S+ + +V+R G YTC+ S G
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVS 96
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.5 bits (75), Expect = 4e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
S + N ++ AG Y C+ G G SN
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 33.3 bits (75), Expect = 5e-04
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ L + V G YT N G +
Sbjct: 56 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 88
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 32.7 bits (73), Expect = 7e-04
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA---QKT 54
SLV + GHY C G S +KT
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 32.5 bits (73), Expect = 9e-04
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
L + + G YT + N G Q+
Sbjct: 55 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 87
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 32.3 bits (72), Expect = 0.001
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ N L ++NV + AG Y C GSN Q A
Sbjct: 50 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT 85
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 32.7 bits (73), Expect = 0.001
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAYD 57
++ + G YT N G+ Q N D
Sbjct: 93 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 31.4 bits (70), Expect = 0.002
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
L + +G Y CV N G ++A+
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAE 84
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.3 bits (70), Expect = 0.002
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEG 45
L+++ ++A A Y+ + + G+
Sbjct: 55 KKHILIIEGATKADAAEYSVMTTGGQS 81
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 31.4 bits (70), Expect = 0.002
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ + +V + G+Y+ V N EG ++
Sbjct: 54 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFT 86
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 30.9 bits (69), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ SL++++V + G+YTCV N G
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 31.0 bits (69), Expect = 0.004
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 26 QNVSRARAGHYTCVGSNGEGDGQSNAQ 52
V YTC N G+ A+
Sbjct: 70 SEVCGDDDAKYTCKAVNSLGEATCTAE 96
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 30.6 bits (68), Expect = 0.004
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
L +QNV G Y C N +G +
Sbjct: 54 EPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 86
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 30.4 bits (67), Expect = 0.006
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 2 SFSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
+ + N S + + L+ V+ +G Y C NG G +
Sbjct: 48 DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSE 97
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.5 bits (65), Expect = 0.011
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 16 VIVSNQSLVLQNVSRARAGHYTCVGSNG 43
+ L+L++V +G+Y+C +
Sbjct: 55 WAGMGRRLLLRSVQLHDSGNYSCYRAGR 82
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 29.5 bits (65), Expect = 0.013
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 24 VLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
V+++V+ + N G+ S+A
Sbjct: 64 VIRDVTGEDSASIMVKAINIAGETSSHAF 92
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 29.6 bits (65), Expect = 0.015
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ L ++NV+ AG YTC+ N G +A
Sbjct: 72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAW 105
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 29.6 bits (65), Expect = 0.016
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+L +QNV + G YTC + ++ +
Sbjct: 79 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVE 112
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 28.9 bits (63), Expect = 0.017
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 23 LVLQNVSRARAGHYTCVGSNGEGDGQSNAQKTAY 56
L ++N S + AG CVGS G Q Q Y
Sbjct: 57 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY 90
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 29.1 bits (64), Expect = 0.018
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ L ++NV + Y C+ N G+ ++
Sbjct: 62 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIH 94
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 28.7 bits (63), Expect = 0.022
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
S + L+ + G YTC NG G Q ++
Sbjct: 59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 28.7 bits (63), Expect = 0.022
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
+V+ ++ V AG Y CV +N G S
Sbjct: 58 LVAGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 27.6 bits (60), Expect = 0.055
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEG 45
+ SL + N++ + Y N
Sbjct: 59 SGSLTIYNLTSSDEDEYEMESPNITD 84
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 28.0 bits (61), Expect = 0.065
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQ 52
+ S+ + N+ + G Y C G
Sbjct: 86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIH 119
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.2 bits (59), Expect = 0.077
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 24 VLQNVSRARAGHYTCVGSNGEGDGQSN 50
L++V R+ AG Y C +G S
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQ 83
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 27.2 bits (59), Expect = 0.097
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
+ + + + + +G Y C G+ G S
Sbjct: 48 DPNFSIPQANHSHSGDYHCTGNIGYTLYSSKP 79
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.9 bits (58), Expect = 0.12
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 24 VLQNVSRARAGHYTCVGSNGEGDGQSNA 51
V +S + G Y+C NG G ++
Sbjct: 69 VFDPLSASDTGEYSCEARNGYGTPMTSN 96
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 26.9 bits (58), Expect = 0.13
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEG 45
++L++ N+S +G Y C+
Sbjct: 49 RKNLLIFNLSEGDSGVYQCLSEERVK 74
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 26.8 bits (58), Expect = 0.14
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 9 YNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
Y N + I +N S+V+ + + G Y CV E D
Sbjct: 53 YKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLA 98
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.5 bits (57), Expect = 0.15
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEGDGQSNA 51
N ++ + N + +G Y C G + D +S
Sbjct: 48 NHNISITNATVEDSGTYYCTGKVWQLDYESEP 79
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.0 bits (56), Expect = 0.27
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEG 45
++L + S A Y CV +
Sbjct: 61 KRTLTISQCSLADDAAYQCVVGGEKC 86
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 25.8 bits (56), Expect = 0.31
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEGDGQS 49
I SN SL+ Q ++ G YT ++
Sbjct: 67 IYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQ 99
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 25.8 bits (55), Expect = 0.39
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 22 SLVLQNVSRARAGH-YTCVGSNGEGDGQSNAQ 52
+L + N+ RA Y C N G +
Sbjct: 70 TLTISNIVRADFQTIYNCTAWNSFGSDTEIIR 101
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 25.4 bits (55), Expect = 0.47
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 17 IVSNQSLVLQNVSRARAGHYTCVGSNGEG 45
I++N L ++N++R +G Y + G
Sbjct: 56 ILANGDLKIKNLTRDDSGTYNVTVYSTNG 84
>d1xcra1 d.290.1.2 (A:3-315) Hypothetical protein PTD012 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 313
Score = 25.5 bits (56), Expect = 0.47
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 31 ARAGHYTCVGSNGEG 45
A AG + +G N E
Sbjct: 95 AGAGPFQTLGFNSEF 109
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 25.3 bits (54), Expect = 0.48
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 24 VLQNVSRARAGHYTCVGSNGEG 45
++ + + G Y C G
Sbjct: 59 QIRGIKKTDEGTYRCEGRILAR 80
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 25.0 bits (53), Expect = 0.56
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 19 SNQSLVLQNVS-RARAGHYTCVGSNGEGDGQSNAQ 52
L ++N++ A G Y C G++ +G Q+
Sbjct: 63 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 97
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 89
Score = 24.9 bits (53), Expect = 0.70
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 24 VLQNVSRARAGHYTCVGSNGEGDGQSNA 51
+ + +G Y C G G + S
Sbjct: 54 HIPKATLKDSGSYFCRGLVGSKNVSSET 81
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 24.0 bits (51), Expect = 1.3
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 20 NQSLVLQNVSRARAGHYTCVGSNGEG 45
L+L N G + +N +
Sbjct: 55 KHILILHNCQLGMTGEVSFQAANAKS 80
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 23.7 bits (50), Expect = 1.4
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 25 LQNVSRARAGHYTCVGSNGEG 45
+ + +G Y C +
Sbjct: 56 IDAATVNDSGEYRCQTNLSTL 76
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 24.1 bits (51), Expect = 1.5
Identities = 2/43 (4%), Positives = 8/43 (18%)
Query: 3 FSNVQLYNNISAGVIVSNQSLVLQNVSRARAGHYTCVGSNGEG 45
+ A + + + ++C
Sbjct: 42 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR 84
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 24.0 bits (50), Expect = 1.7
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 34 GHYTCVGSNGEGDGQSNAQ 52
+TC N G + Q
Sbjct: 84 HPFTCFAKNTHGIDAAYIQ 102
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 23.4 bits (49), Expect = 2.1
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSN 50
+ VL ++ ++C N +G S
Sbjct: 47 APSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 78
>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei,
Endoglucanase I [TaxId: 51453]}
Length = 371
Score = 23.6 bits (51), Expect = 2.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 13 SAGVIVSNQSLVLQNVSRARAGHYTCVGS 41
++GV S SL + + +G Y+ V
Sbjct: 79 ASGVTTSGSSLTMNQYMPSSSGGYSSVSP 107
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 22.8 bits (49), Expect = 3.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 24 VLQNVSRARAGHYTCVGSNGEGDGQSN 50
++ N + G TC + ++N
Sbjct: 62 IISNATYKEIGLLTCEATVNGHLYKTN 88
>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 96
Score = 22.3 bits (47), Expect = 5.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 25 LQNVSRARAGHYTCVGS 41
+ +++ AG Y C GS
Sbjct: 61 ISRMTQDLAGTYRCYGS 77
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 22.1 bits (46), Expect = 7.7
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 19 SNQSLVLQNVSRARAGHYTCVGSNGEGDGQSNAQKT 54
+ +L L N+ G Y C+ + + G +
Sbjct: 67 DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQM 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.364
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 228,654
Number of extensions: 7544
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 49
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)