BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7036
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 22/247 (8%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F + + + G + +C++ P+ I W++ T+L M+ +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQF-----KNNV 60
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
+L ++ V +D G Y KA+N +G VA+S L + L P+F +K E G
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERK---LPPSFARKLKDVHETLGF 117
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+ FECRI V W G +K+D + S + A+L+I+ G+Y
Sbjct: 118 PVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN----VATLQILQTDQSHVGQYN 173
Query: 189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI-VIECRLVGE 247
+A N LG ++++ L + P P F +PV+ D L + +C + G
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVP-------PFFDLKPVS--VDLALGESGTFKCHVTGT 224
Query: 248 PEPTISW 254
I+W
Sbjct: 225 APIKITW 231
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 99/211 (46%), Gaps = 22/211 (10%)
Query: 1 MGIAEDFAPSFTQK---PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM 57
+G+ E P F +K ++ ++DE R +EC++ +P+ ++W++ ET++ E ++ M
Sbjct: 285 LGVQE--PPRFIKKLEPSRIVKQDEHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRM 340
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK 117
+ + LE+ ++ D+G Y +A N G ++S +L P F K
Sbjct: 341 SFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRK 389
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
KP + G + EC +Q P V W +++ K++K ++ S+ I+
Sbjct: 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM----SENFLTSIHIL 445
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+V D G+Y+ A N++G S+ +
Sbjct: 446 NVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 22/246 (8%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
PSF +K + E G + FEC++ + + W++ L +D ++T+ I L
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN--LQTSFIHNVATL 159
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
L+ D ++ G Y A N +G ++S L S ++ P F KP G+
Sbjct: 160 QILQTD---QSHVGQYNCSASNPLGTASSSAKLTLSEHEV---PPFFDLKPVSVDLALGE 213
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
F+C + + W+ +++ +K ++ ++ A+L ++ VT DAG+Y
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT----ATLTVLKVTKGDAGQYT 269
Query: 189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP 248
A N G+ + + L P K + R + KQ + EC++ G P
Sbjct: 270 CYASNVAGKDSCSAQLGVQE-----PPRFIKKLEPSR-IVKQDEHTR----YECKIGGSP 319
Query: 249 EPTISW 254
E + W
Sbjct: 320 EIKVLW 325
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F KP G F+C + I W + ++ K T + L
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN--YKMTLVENTATL 255
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK--PS-IRQED 125
L+ V + DAG Y A N G+ + S L P F+KK PS I ++D
Sbjct: 256 TVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQD 306
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ R +EC+I P V+W +++E + + S + A LE+ ++++ED+G
Sbjct: 307 EHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNLSVEDSG 360
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y A N G ++++ SL PVF ++P ++ D+ +EC L
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEP----------PVFRKKPHPVETLKGA-DVHLECELQ 409
Query: 246 GEPEPTISW 254
G P +SW
Sbjct: 410 GTPPFQVSW 418
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F +KP + +G + EC+L P + W + + +L K I + +L
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG-----KKYKIMSENFL 439
Query: 69 VALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
++ + +V D G Y+ KA N +G SI L P F+KK S
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK--------APPRFVKKLSDISTVV 491
Query: 127 GKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G+ + + I+ A+P + G V+E S ++ A+L+ +AG
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN----IATLQFSRAEPANAG 547
Query: 186 KYKVTAKNELG--ESNATISL 204
KY KNE G E AT+S+
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 10/197 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP+FTQ Q EG+ FE + P P++ WFR +S T + I +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST---LPGVQISFSDG 61
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + V + ++G Y +KA N G+ ++ L E P F+++ G
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP---PNFVQRLQSMTVRQG 118
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
++ + R+ P P V + G +++ F I ++G Y SL I + ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLY--SLLIAEAYPEDSGTY 174
Query: 188 KVTAKNELGESNATISL 204
V A N +G + +T L
Sbjct: 175 SVNATNSVGRATSTAEL 191
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--GETQLSEDTRTVMKTTP 61
AE P+F Q+ Q +G+++ + ++ P P + ++R E Q S D +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ------- 151
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
I L +L + + D+G Y V A N +G ++ L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 10/197 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP+FTQ Q EG+ FE + P P++ WFR +S T + I +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST---LPGVQISFSDG 61
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + V + ++G Y +KA N G+ ++ L E P F+++ G
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP---PNFVQRLQSMTVRQG 118
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
++ + R+ P P V + G +++ F I ++G Y SL I + ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSS--LDFQISQEGDLY--SLLIAEAYPEDSGTY 174
Query: 188 KVTAKNELGESNATISL 204
V A N +G + +T L
Sbjct: 175 SVNATNSVGRATSTAEL 191
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--GETQLSEDTRTVMKTTP 61
AE P+F Q+ Q +G+++ + ++ P P + ++R E Q S D +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ------- 151
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
I L +L + + D+G Y V A N +G ++ L
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 45/244 (18%)
Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSE---DTRTVMKTTPIGTNKYLVALELDDVIET 79
G+ ++ +C+++ +P P I W + + L+ D+R V+ P G AL++ +
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--LPSG------ALQISRLQPG 187
Query: 80 DAGLYKVKAKNKM-------GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
D+G+Y+ A+N EV + R+ FL++PS +GK +
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY------FLQRPSNVIAIEGKDAVL 241
Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK--VT 190
EC + P P+ W G +V + + K+S+ ++L I +VT +D+G Y VT
Sbjct: 242 ECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGG-----SNLLISNVTDDDSGTYTCVVT 295
Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
KNE ++A +++ VP P F P + + + DI EC + G+P P
Sbjct: 296 YKNENISASAELTV-------LVP-----PWFLNHPSNLYAYESM-DIEFECAVSGKPVP 342
Query: 251 TISW 254
T++W
Sbjct: 343 TVNW 346
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 22/195 (11%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA 70
F Q+P EG + EC + P P W RGE + ++ K + +G + L++
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK---KYSLLGGSNLLIS 280
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL 130
+V + D+G Y K ++AS L + P FL PS + +
Sbjct: 281 ----NVTDDDSGTYTCVVTYKNENISASAELTVL------VPPWFLNHPSNLYAYESMDI 330
Query: 131 LFECRIQADPAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
FEC + P PTV W +G V + D F I ++L I+ V D G Y+
Sbjct: 331 EFECAVSGKPVPTVNWMKNGDVVIPSD---YFQIVGG-----SNLRILGVVKSDEGFYQC 382
Query: 190 TAKNELGESNATISL 204
A+NE G + ++ L
Sbjct: 383 VAENEAGNAQSSAQL 397
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKY 67
P F P E + FEC + P P + W + G+ + D ++ G+N
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG----GSN-- 366
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
L + V+++D G Y+ A+N+ G +S L
Sbjct: 367 ---LRILGVVKSDEGFYQCVAENEAGNAQSSAQL 397
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVK---EDKRHKFSIDKDGHSY 170
F+ +PS G +L C ++D P + W G+ + +D++ + +G
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQL---PNGSLL 80
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
++ D G Y+ A LG+S + IS T V P+
Sbjct: 81 IQNILHSRHHKPDEGLYQCEAS--LGDSGSIISR-------------TAKVMVAGPLRFL 125
Query: 231 SDDD-----LND-IVIECRLVGEPEPTISW 254
S + + D ++++C ++G+P PTI W
Sbjct: 126 SQTESITAFMGDTVLLKCEVIGDPMPTIHW 155
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
A S QK + G + F C+ +P+P I WFR + E+ + ++K G+N
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 57
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + ++I +D G Y +A NK GE L + P ++ + ++G
Sbjct: 58 -TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF------VQPHIIQLKNETTYENG 110
Query: 128 KRLLFECRIQADPAPTVIWSHS--GVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ L C + +P P + W + G E DK I+ G +SL I DV + D+
Sbjct: 111 QVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDS 169
Query: 185 GKYKVTAKNELGESNATISLNFD 207
G+Y A + +G ++ L+ +
Sbjct: 170 GRYDCEAASRIGGHQKSMYLDIE 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + F CR P P + W +G ++E++++ I K ++ II+ D G
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKY---ILKGSNTELTVRNIIN---SDGGP 72
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD---DLNDIVIECR 243
Y A N+ GE L VF + + + ++ + + + C
Sbjct: 73 YVCRATNKAGEDEKQAFLQ---------------VFVQPHIIQLKNETTYENGQVTLVCD 117
Query: 244 LVGEPEPTISW 254
GEP P I+W
Sbjct: 118 AEGEPIPEITW 128
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 1 MGIAEDFAPSFTQK---PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM 57
+G+ E P F +K ++ ++DE R +EC++ +P+ ++W++ ET++ E ++ M
Sbjct: 93 LGVQE--PPRFIKKLEPSRIVKQDEHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRM 148
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK 117
+ + LE+ ++ D+G Y +A N G ++S +L P F K
Sbjct: 149 SFV-----ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRK 197
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
KP + G + EC +Q P V W +++ K++K + ++ S+ I+
Sbjct: 198 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE----NFLTSIHIL 253
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+V D G+Y+ A N++G S+ +
Sbjct: 254 NVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F KP G F+C + I W + ++ K T + L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN--YKMTLVENTATL 63
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK--PS-IRQED 125
L+ V + DAG Y A N G+ + S L P F+KK PS I ++D
Sbjct: 64 TVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQD 114
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ R +EC+I P V+W +++E + + S + A LE+ ++++ED+G
Sbjct: 115 EHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNLSVEDSG 168
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y A N G ++++ SL PVF ++P ++ D+ +EC L
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKEP----------PVFRKKPHPVETLKGA-DVHLECELQ 217
Query: 246 GEPEPTISW 254
G P +SW
Sbjct: 218 GTPPFQVSW 226
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 96/203 (47%), Gaps = 20/203 (9%)
Query: 9 PSFTQK---PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
P F +K ++ ++DE R +EC++ +P+ ++W++ ET++ E ++ M
Sbjct: 99 PRFIKKLEPSRIVKQDEHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRMSFV----- 151
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ + LE+ ++ D+G Y +A N G ++S +L P F KKP +
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 205
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G + EC +Q P V W +++ K++K + ++ S+ I++V D G
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE----NFLTSIHILNVDSADIG 261
Query: 186 KYKVTAKNELGESNATISLNFDS 208
+Y+ A N++G S+ +
Sbjct: 262 EYQCKASNDVGSYTCVGSITLKA 284
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F KP G F+C + I W + ++ K T + L
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN--YKMTLVENTATL 63
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK--PS-IRQED 125
L+ V + DAG Y A N G+ + S L P F+KK PS I ++D
Sbjct: 64 TVLK---VTKGDAGQYTCYASNVAGKDSCSAQLGVQ------APPRFIKKLEPSRIVKQD 114
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ R +EC+I P V+W +++E + + S + A LE+ ++++ED+G
Sbjct: 115 EHTR--YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES----VAVLEMYNLSVEDSG 168
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y A N G ++++ SL PVF ++P ++ D+ +EC L
Sbjct: 169 DYTCEAHNAAGSASSSTSLKVKEP----------PVFRKKPHPVETLKGA-DVHLECELQ 217
Query: 246 GEPEPTISW 254
G P +SW
Sbjct: 218 GTPPFQVSW 226
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
F C + P+P+I W R + + DTR ++ + L L ++D +D G+Y
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTRYSIREN----GQLLTILSVED---SDDGIYCC 79
Query: 87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW 146
A N +G S Q+ + P + P + +G + + C +P P+V W
Sbjct: 80 TANNGVGGAVESCG----ALQVK-MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 147 SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
++E+ R ++ + G SL I +V EDAG+Y+ AKN LG +
Sbjct: 135 IKGDSALRENSR--IAVLESG-----SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P T+ P + EG + + C + NPKP + W +G++ L E++R + +
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG------- 153
Query: 69 VALELDDVIETDAGLYKVKAKNKMG 93
+L + +V + DAG Y+ AKN +G
Sbjct: 154 -SLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 23/127 (18%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
F C +++ P P + W+ + + +K D R +SI ++G L I+ V D G Y T
Sbjct: 27 FMCAVESYPQPEISWTRNKILIKLFDTR--YSIRENGQL----LTILSVEDSDDGIYCCT 80
Query: 191 AKNELG---ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
A N +G ES + + KP T P+ + + L V+ C +G
Sbjct: 81 ANNGVGGAVESCGALQVKM------------KPKITRPPINVKIIEGLKA-VLPCTTMGN 127
Query: 248 PEPTISW 254
P+P++SW
Sbjct: 128 PKPSVSW 134
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 2 GIAEDFAPSF-TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
G+ ++ P Q P+ ++G + EC L NP P I+W R + + K+
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 257
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
I LE+ + + DAG Y+ A+N G+ A L F + P +++ +
Sbjct: 258 GI--------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------PNWVQIIN 303
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ + +EC+ P PT W +G + R + I++ +L I V
Sbjct: 304 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL--TRDRIQIEQ------GTLNITIVN 355
Query: 181 IEDAGKYKVTAKNELG 196
+ DAG Y+ A+N+ G
Sbjct: 356 LSDAGMYQCVAENKHG 371
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 51/241 (21%)
Query: 32 LLCNPKP-----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
LLC P P W E +D R + N Y+ +E DV +
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNT 179
Query: 87 KAKNK-MGEVAASINLNFSREQIDGLAPTFLKK-----PSIRQEDDGKRLLFECRIQADP 140
+K +G I N DG+ + K P + G + EC +P
Sbjct: 180 VTNHKVLGPPTPLILRN------DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 233
Query: 141 APTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
PT++W + + ++ +RHK + LEI + EDAG Y+ A+N G++
Sbjct: 234 VPTILWRRADGKPIARKARRHKSN---------GILEIPNFQQEDAGSYECVAENSRGKN 284
Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN-----DIVIECRLVGEPEPTIS 253
A L F + +P Q +D++ + EC+ G P+PT
Sbjct: 285 VAKGQLTFYA----------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 328
Query: 254 W 254
W
Sbjct: 329 W 329
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 46/264 (17%)
Query: 8 APSFTQKP---QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P F Q+P + E ++ C++ NPKP I W T + IG
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD-----------IGM 53
Query: 65 N-KYLV---ALELDDVIET-DAGLYKVKAKNKMGEVAA-SINLNFSREQIDGLAPTFLKK 118
+ +Y V +L +++ +T DAG Y+ A N G + + L F+ ++
Sbjct: 54 DFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA--YLENFKTRTRST 111
Query: 119 PSIRQEDDGKRLLFECRIQADPAP-----TVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
S+R+ G+ ++ C P P + W + +D R +F + G+ Y A
Sbjct: 112 VSVRR---GQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNR-RFVSQETGNLYIAK 163
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNAT---ISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
+E DV G Y N + L +D V GE + + P T
Sbjct: 164 VEKSDV-----GNYTCVVTNTVTNHKVLGPPTPLILRNDG--VMGEYEPKIEVQFPETVP 216
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
++ + +EC +G P PTI W
Sbjct: 217 AEKG-TTVKLECFALGNPVPTILW 239
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 110 GLAPTFLKKPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
G P F+++PS + + K++ C ++ +P P + W +G V ++S+ D
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD 61
Query: 167 GHSYFASLEIIDVT-IEDAGKYKVTAKNELG 196
G SL I + +DAG Y+ A N G
Sbjct: 62 G-----SLLINNPNKTQDAGTYQCIATNSFG 87
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 26 LIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY 84
+ +EC+ PKP W + G+ L+ D + + T L + V +DAG+Y
Sbjct: 313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT----------LNITIVNLSDAGMY 362
Query: 85 KVKAKNKMGEVAASINLNFSRE 106
+ A+NK G + +S L+ E
Sbjct: 363 QCVAENKHGVIFSSAELSVIAE 384
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 215 GEGTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEPTISW 254
G G+ PVF + P V D + + + C + G P+P I W
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRW 42
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 23/196 (11%)
Query: 2 GIAEDFAPSF-TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
G+ ++ P Q P+ ++G + EC L NP P I+W R + + K+
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN 256
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
I LE+ + + DAG Y+ A+N G+ A L F + P +++ +
Sbjct: 257 GI--------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ------PNWVQIIN 302
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ + +EC+ P PT W +G + R + I++ +L I V
Sbjct: 303 DIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL--TRDRIQIEQ------GTLNITIVN 354
Query: 181 IEDAGKYKVTAKNELG 196
+ DAG Y+ A+N+ G
Sbjct: 355 LSDAGMYQCVAENKHG 370
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 51/241 (21%)
Query: 32 LLCNPKP-----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86
LLC P P W E +D R + N Y+ +E DV +
Sbjct: 121 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNT 178
Query: 87 KAKNK-MGEVAASINLNFSREQIDGLAPTFLKK-----PSIRQEDDGKRLLFECRIQADP 140
+K +G I N DG+ + K P + G + EC +P
Sbjct: 179 VTNHKVLGPPTPLILRN------DGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP 232
Query: 141 APTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
PT++W + + ++ +RHK + LEI + EDAG Y+ A+N G++
Sbjct: 233 VPTILWRRADGKPIARKARRHKSN---------GILEIPNFQQEDAGSYECVAENSRGKN 283
Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN-----DIVIECRLVGEPEPTIS 253
A L F + +P Q +D++ + EC+ G P+PT
Sbjct: 284 VAKGQLTFYA----------------QPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 327
Query: 254 W 254
W
Sbjct: 328 W 328
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 46/264 (17%)
Query: 8 APSFTQKP---QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P F Q+P + E ++ C++ NPKP I W T + IG
Sbjct: 4 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVD-----------IGM 52
Query: 65 N-KYLV---ALELDDVIET-DAGLYKVKAKNKMGEVAA-SINLNFSREQIDGLAPTFLKK 118
+ +Y V +L +++ +T DAG Y+ A N G + + L F+ ++
Sbjct: 53 DFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA--YLENFKTRTRST 110
Query: 119 PSIRQEDDGKRLLFECRIQADPAP-----TVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
S+R+ G+ ++ C P P + W + +D R +F + G+ Y A
Sbjct: 111 VSVRR---GQGMVLLC----GPPPHSGELSYAWIFNEYPSYQDNR-RFVSQETGNLYIAK 162
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNAT---ISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
+E DV G Y N + L +D V GE + + P T
Sbjct: 163 VEKSDV-----GNYTCVVTNTVTNHKVLGPPTPLILRNDG--VMGEYEPKIEVQFPETVP 215
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
++ + +EC +G P PTI W
Sbjct: 216 AEKG-TTVKLECFALGNPVPTILW 238
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 110 GLAPTFLKKPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
G P F+++PS + + K++ C ++ +P P + W +G V ++S+ D
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD 60
Query: 167 GHSYFASLEIIDVT-IEDAGKYKVTAKNELG 196
G SL I + +DAG Y+ A N G
Sbjct: 61 G-----SLLINNPNKTQDAGTYQCIATNSFG 86
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 26 LIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLY 84
+ +EC+ PKP W + G+ L+ D + + T L + V +DAG+Y
Sbjct: 312 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT----------LNITIVNLSDAGMY 361
Query: 85 KVKAKNKMGEVAASINLNFSRE 106
+ A+NK G + +S L+ E
Sbjct: 362 QCVAENKHGVIFSSAELSVIAE 383
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 217 GTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEPTISW 254
G+ PVF + P V D + + + C + G P+P I W
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRW 41
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G+ P PS D+GK L C +P P V WS G ++ ++ +F I+
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT--D 60
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+L I+DV +D G Y ++ NE G +AT++++ S
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 21 DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
DEG L C P P++ W G ++ + I L L + DV + D
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFH---IENTDDLTTLIIMDVQKQD 74
Query: 81 AGLYKVKAKNKMGEVAASINLNF 103
GLY + N+ G +A++N++
Sbjct: 75 GGLYTLSLGNEFGSDSATVNIHI 97
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKY 67
P +KPQ + G F C +P P IVW + ++S +R + P G
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---- 64
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
+ L ++ V D Y+ A+N +G+ V+A L + ++ P + P R
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ G +L C+ +P P + W + Q K D + KDG L+I + ED
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKN--QTKVDMSNPRYSLKDGF-----LQIENSREEDQ 177
Query: 185 GKYKVTAKNELGESNA 200
GKY+ A+N +G ++
Sbjct: 178 GKYECVAENSMGTEHS 193
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P ++KP + G F C + DP P+++W +G +V + +++ G
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
+E + +DA Y+ A+N +G+ ++AT+++ ++ D P PV T+ P T+
Sbjct: 69 RIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI-YEGDKTPA----GFPVITQGPGTR 122
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
+ + +++ C+ +G P P I W
Sbjct: 123 VIEVG-HTVLMTCKAIGNPTPNIYW 146
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKY 67
P TQ P R + G+ ++ C+ + NP P+I W + +T++ + R +K
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG------- 165
Query: 68 LVALELDDVIETDAGLYKVKAKNKMG-EVAASINLNFSREQIDGLAPTF 115
L++++ E D G Y+ A+N MG E + + NL ++ + PTF
Sbjct: 166 --FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV---KVRRVPPTF 209
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G+ P PS D+GK L C +P P V WS G ++ ++ +F I+
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT--D 62
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+L I+DV +D G Y ++ NE G +AT++++ S
Sbjct: 63 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G + P P DEG L C P P++ W G ++ +
Sbjct: 1 GSSRGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFH--- 57
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
I L L + DV + D GLY + N+ G +A++N++
Sbjct: 58 IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P ++KP + G F C + DP P+++W +G +V + +++ G
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
+E + +DA Y+ A+N +G+ ++AT+++ ++ D P PV T+ P T+
Sbjct: 67 RIEPVRAGRDDA-PYECVAENGVGDAVSADATLTI-YEGDKTPA----GFPVITQGPGTR 120
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
+ + +++ C+ +G P P I W
Sbjct: 121 VIEVG-HTVLMTCKAIGNPTPNIYW 144
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 15/196 (7%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKY 67
P +KPQ + G F C +P P IVW + ++S +R + P G
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---- 62
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
+ L ++ V D Y+ A+N +G+ V+A L + ++ P + P R
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ G +L C+ +P P + W + Q K D + KDG L+I + ED
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKN--QTKVDMSNPRYSLKDGF-----LQIENSREEDQ 175
Query: 185 GKYKVTAKNELGESNA 200
GKY+ A+N +G ++
Sbjct: 176 GKYECVAENSMGTEHS 191
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRG-ETQLSEDTRTVMKTTPIGTNKYL 68
F P ++ EG + C ++ + P I+W +G + L +D R + + +N YL
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----VLSNNYL 157
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQ-IDGLAPTFLKKPSI--RQED 125
++ + +TD G Y+ + G + A +NF Q I + PT + SI +
Sbjct: 158 ---QIRGIKKTDEGTYRCE-----GRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVK----EDKRHKFSIDKDGHSYFASLEIIDVTI 181
G+ + C P PT+ W+ G ++ +D++H FS D + L I +V
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS------SELTIRNVDK 263
Query: 182 EDAGKYKVTAKNELGESNATISL 204
D +Y A+N+ GE +A+I L
Sbjct: 264 NDEAEYVCIAENKAGEQDASIHL 286
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 23 GNRLIFECQLLCNPK-PDIVWF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET 79
G F CQ+ + K DI WF GE +LS + + + + + + L + +
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGE-KLSPNQQ---RISVVWNDDDSSTLTIYNANID 72
Query: 80 DAGLYKVKAKNKMG-EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
DAG+YK + G + A++N+ ++ + F P+ ++ +G+ + C + +
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLM------FKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY----KVTAKNE 194
PT+IW H G V K +F + + + L+I + D G Y ++ A+ E
Sbjct: 127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIRGIKKTDEGTYRCEGRILARGE 181
Query: 195 LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + + +N P + + + QS + + C G PEPT+SW
Sbjct: 182 INFKDIQVIVN-----VPPTVQARQSIVNATANLGQS------VTLVCDADGFPEPTMSW 230
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 25/199 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS----------EDTRTVMK 58
P FT+ P + G F CQ +P+P IVW + ++S + + +V++
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
P+ T + D +Y+ A N +GE++ S L RE QI PT
Sbjct: 67 IQPLRTPR-------------DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P ++ + + C +P P + W + V + + I + +L+I
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV-DTSNNNGRIKQLRSESIGALQIE 172
Query: 178 DVTIEDAGKYKVTAKNELG 196
D GKY+ A N G
Sbjct: 173 QSEESDQGKYECVATNSAG 191
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F + P + G F C+ DP P ++W+ G +V + D DG
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFD-DGSGSVL 65
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
++ + T D Y+ A N +GE + + L +D G T + + V +++
Sbjct: 66 RIQPLR-TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT- 123
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
+ C G P+P I+W
Sbjct: 124 ---RTATMLCAASGNPDPEITW 142
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 22/206 (10%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL---SEDTRTVMKTTP 61
EDF P + P +G C+ P P I W++G ++ +D R+ P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA---ASINLNFSREQIDGLAPTFLKK 118
G+ +L + D G+Y A+N +GE AS+ + R+ F +
Sbjct: 66 SGSLFFLRIVHGRKS-RPDEGVYVCVARNYLGEAVSHDASLEVAILRDD-------FRQN 117
Query: 119 PSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
PS G+ + EC+ + P PT+ W G + +DK + +I L I
Sbjct: 118 PSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL-DDKDERITIRG------GKLMIT 170
Query: 178 DVTIEDAGKYKVTAKNELGESNATIS 203
DAGKY N +GE + ++
Sbjct: 171 YTRKSDAGKYVCVGTNMVGERESEVA 196
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV---KEDKRHKFSIDKDGHS 169
P ++ PS G+ C+ + P PT+ W G +V K+D R + G
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERP 226
+F + + D G Y A+N LGE+ +A++ + DD
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD---------------- 113
Query: 227 VTKQSDDDL-----NDIVIECR-LVGEPEPTISW 254
+Q+ D+ V+EC+ G PEPTISW
Sbjct: 114 -FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISW 146
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 49/250 (19%)
Query: 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD 74
P + D G +F CQ NP + W + D + + + + L ++
Sbjct: 350 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-------DGKAIGHSESV--------LRIE 394
Query: 75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE------DDGK 128
V + D G+Y+ +N AS L P IRQ + G
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGR---------FDPPVIRQAFQEETMEPGP 445
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF----SIDKDGHSYFASLEIIDVTIEDA 184
+ +C +P P + W G ++ + R++ +++ D SY L I V D
Sbjct: 446 SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSY---LNITSVHANDG 502
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
G YK AK+++G + + LN P R + K++ +++ C +
Sbjct: 503 GLYKCIAKSKVGVAEHSAKLNVYG----------LPYI--RQMEKKAIVAGETLIVTCPV 550
Query: 245 VGEPEPTISW 254
G P +I W
Sbjct: 551 AGYPIDSIVW 560
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 29/198 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P Q Q + G + +C NP P+I W +++ + R + +
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD-- 126
L + V D GLYK AK+K+G S LN + GL P IRQ +
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN-----VYGL-------PYIRQMEKKA 537
Query: 127 ---GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE- 182
G+ L+ C + P +++W + +++ K F + +I +E
Sbjct: 538 IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV---------FPNGTLIIENVER 588
Query: 183 --DAGKYKVTAKNELGES 198
D Y AKN+ G S
Sbjct: 589 NSDQATYTCVAKNQEGYS 606
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 32/186 (17%)
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKR 129
L + D + D+G Y N +G + L + AP K P + D G+
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-------APLSAKIDPPTQTVDFGRP 360
Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
+F C+ +P TV W G + GHS + L I V ED G Y+
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAI-------------GHSE-SVLRIESVKKEDKGMYQC 406
Query: 190 TAKNELGESNATISLNFDSD-DAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP 248
+N+ + A+ L D PV + F E ++ + + ++C G P
Sbjct: 407 FVRNDRESAEASAELKLGGRFDPPV----IRQAFQE-----ETMEPGPSVFLKCVAGGNP 457
Query: 249 EPTISW 254
P ISW
Sbjct: 458 TPEISW 463
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 106/264 (40%), Gaps = 38/264 (14%)
Query: 1 MGIAEDFAP-SFTQKPQLRQEDE-----GNRLIFECQLLCNPKPDIVWFRGETQLSEDTR 54
+G+AE A + P +RQ ++ G LI C + P IVW R L + +
Sbjct: 513 VGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRK 572
Query: 55 TVMKTTPIGTNKYLVALELDDV-IETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAP 113
K P GT L +++V +D Y AKN+ G +A +L + + P
Sbjct: 573 --QKVFPNGT------LIIENVERNSDQATYTCVAKNQEG-YSARGSLEVQVMVLPRIIP 623
Query: 114 -TFLKKPSIRQEDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFS-IDKDGHSY 170
F + P+ G+ L C + P I W+ G + ED S + + G
Sbjct: 624 FAFEEGPA----QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG--- 676
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
+ L I V AG + A+N G T LN VP P + P T +
Sbjct: 677 -SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY-----VP-----PRWILEP-TDK 724
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
+ +D +EC+ G P+P ++W
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTW 748
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 109 DGLAPTFLKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
D P FLK+P+ R + + EC+ +P P +IW S D I DG
Sbjct: 35 DQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 94
Query: 168 HSYFASLEIIDVTIE-DAGKYKVTAKNELG 196
F D E A Y A+N+ G
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFG 124
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query: 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
L K ++ + C Q P P W + ++ ++ ++ +L
Sbjct: 252 LAKFDMKTYSGSSTMALLCPAQGYPVPVFRW-YKFIE-GTTRKQAVVLNDRVKQVSGTLI 309
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
I D +ED+GKY N +G + L T P+ + Q+ D
Sbjct: 310 IKDAVVEDSGKYLCVVNNSVGGESVETVLTV-----------TAPLSAKIDPPTQTVDFG 358
Query: 236 NDIVIECRLVGEPEPTISW 254
V C+ G P T+SW
Sbjct: 359 RPAVFTCQYTGNPIKTVSW 377
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 4 AEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
A+ P F ++P R + EC+ NP P+I+W R + D + + +
Sbjct: 34 ADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD 93
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95
G + D E A +Y A+N+ G +
Sbjct: 94 GKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI 126
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
PVF + P + + IEC+ G P P I W
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 73
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 25/221 (11%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
AP F ++ + + C++ +PKP + W+R G+ +++ + ++ G +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ ++A DD DA +Y+V+A N+ G V+ + +L L P L+
Sbjct: 63 QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 117
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH------SYFASLEIID- 178
G+ + + P P + W ++ + ID +GH F SL +
Sbjct: 118 RGEVVSIKIPFSGKPDPVITW----------QKGQDLIDNNGHYQVIVTRSFTSLVFPNG 167
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
V +DAG Y V AKN G T+ L D D P P G K
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVEL--DVADVPDPPRGVK 206
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 110 GLAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDK 165
+AP F L+ ++R + + + C++ P P V W G ++ D +++ K
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVF 222
G + L I VT +DA Y+V A N+ G + T SL + P EG V
Sbjct: 59 GG---YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 223 TERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
R + I+ G+P+P I+W
Sbjct: 116 ALRGEV---------VSIKIPFSGKPDPVITW 138
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 39/210 (18%)
Query: 4 AED---FAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKT 59
AED FAPS + P G ++ EC NP P I W + + LS T T
Sbjct: 198 AEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEPT 257
Query: 60 TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-----LAPT 114
L++ V D G Y+ +A+N G R+ + G P
Sbjct: 258 -----------LQIPSVSFEDEGTYECEAENSKG-----------RDTVQGRIIVQAQPE 295
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
+LK S + D G L + C P PTV W +G + R + L
Sbjct: 296 WLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEV--------LAGDL 347
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISL 204
+++ED+G Y+ A+N+ G A+ L
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAEL 377
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 98/270 (36%), Gaps = 53/270 (19%)
Query: 7 FAPSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
F P F +P +E +++ C+ +P W T+ MK P G
Sbjct: 2 FGPVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTE--------MKLEP-G 52
Query: 64 TNKYLVALEL---DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
+ LV L + DAG+Y+ A N +G V SRE I L FL++ S
Sbjct: 53 SRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVV-------SREAI--LRFGFLQEFS 103
Query: 121 IRQED-----DGKRLLFECRIQAD-PAPTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFA 172
+ D +G ++ C A P + W + + D RH F G+ Y A
Sbjct: 104 KEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRH-FVSQTTGNLYIA 162
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATI-----SLNFDSDDAPVPGEGTK---PVFTE 224
D G Y A + + S ++ LN ++D + K P T
Sbjct: 163 R-----TNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETY 217
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
V +Q + +EC G P P I W
Sbjct: 218 ALVGQQ-------VTLECFAFGNPVPRIKW 240
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 79 TDAGLYKVKAKNKMGEVAASI-----NLNFSREQIDGLAPTFLKK-PSIRQEDDGKRLLF 132
+D G Y A + M S+ LN + E AP+ + P+ G+++
Sbjct: 167 SDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTL 226
Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
EC +P P + W ++ S+ + +L+I V+ ED G Y+ A+
Sbjct: 227 ECFAFGNPVPRIKW----------RKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAE 276
Query: 193 NELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL-NDIVIECRLVGEPEPT 251
N G + + +P + + V ++ D+ +++ C G+P PT
Sbjct: 277 NSKGRDTVQGRIIVQA----------QPEWLK--VISDTEADIGSNLRWGCAAAGKPRPT 324
Query: 252 ISW 254
+ W
Sbjct: 325 VRW 327
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 37/214 (17%)
Query: 2 GIAEDFAPSFTQKPQLRQEDE----GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM 57
G+AE PSF PQ + G L+ EC P PDI W++ L D
Sbjct: 214 GVAER-TPSFMY-PQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF- 270
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK 117
+ AL + +V E D+G Y A NKMG + +I++ AP +L
Sbjct: 271 -------ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK------AAPYWLD 317
Query: 118 KPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
+P + +DG+ + CR +P PTV W +G ++ S + + A
Sbjct: 318 EPKNLILAPGEDGRLV---CRANGNPKPTVQWMVNGEPLQ-------SAPPNPNREVAGD 367
Query: 175 EII--DVTIEDAGKYKVTAKNELGE--SNATISL 204
II D I Y+ NE G +NA +S+
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G LL EC P P + W G + DK KF ++ +L I +V+ ED+G+
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDK-AKF------ENFNKALRITNVSEEDSGE 289
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP---VTKQSDDDLNDIVIECR 243
Y A N++G TIS+ + P + + P + +D + CR
Sbjct: 290 YFCLASNKMGSIRHTISVRVKA----------APYWLDEPKNLILAPGEDGR----LVCR 335
Query: 244 LVGEPEPTISW 254
G P+PT+ W
Sbjct: 336 ANGNPKPTVQW 346
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 30/259 (11%)
Query: 11 FTQKPQLRQE-------DEGNRLIFECQLLCNPKPDIVWFRGET--QLSEDTRTVMKTTP 61
TQ P + ++ D + ++ EC+ NP P W R +++D R M+
Sbjct: 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR- 71
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS-INLNFSREQIDGLAPTFLKKPS 120
+ ++ E G Y+ A+NK G ++ I L S+ L P P
Sbjct: 72 --SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSP---LWPKENLDPV 126
Query: 121 IRQEDDGKRLLFECRIQAD-PAPTVIWSHSGVQ-VKEDKRHKFSIDKDGHSYFASLEIID 178
+ QE G L +C P+P + W S ++ + +DKR S +G YF+++ + D
Sbjct: 127 VVQE--GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR--VSQGHNGDLYFSNVMLQD 182
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK-PVFTERPVTKQSDDDLN- 236
+ + + + + + + N F G + P F T S L
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNP-----FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237
Query: 237 -DIVIECRLVGEPEPTISW 254
D+++EC G P P I+W
Sbjct: 238 MDLLLECIASGVPTPDIAW 256
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G P FL+ P +GK +C++ P P + W G V+ D HK + ++G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG-- 64
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
SL I VT DAG Y A N G+++ ++ L
Sbjct: 65 -VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
+ F P F Q P EG +C++ P PD+ W + D+ M G
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ ++ + V DAG+Y A N+ G+ + S+ L
Sbjct: 65 VHSLII----EPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 26/205 (12%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G D P F + P+ + G F CQ PKP I W + ++S V++
Sbjct: 1 GPGSDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDD 60
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLKKPS 120
G L L ++ D +Y+ A N +GE+ S L+ E Q+ PT P
Sbjct: 61 -GAGSVLRIQPLR--VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQ 117
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIW---------SHSGVQVKEDKRHKFSIDKDGHSYF 171
++ + G+ C +P P + W + S ++K+ + I+ S
Sbjct: 118 LKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEES-- 175
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELG 196
D GKY+ A N G
Sbjct: 176 -----------DQGKYECVATNSAG 189
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+K P + G F C+ +P P + W G +V + D DG
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-DGAGSVL 66
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
++ + V ++A Y+ TA N LGE N + L+ +D G P P K +
Sbjct: 67 RIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLEEDQLPSG---FPTIDMGPQLKVVE 122
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
++ C G P+P ISW
Sbjct: 123 KGRTATML-CAAGGNPDPEISW 143
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 214 PGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
PG +KPVF + P Q+ C+ GEP+P I+W
Sbjct: 2 PGSDSKPVFVKVP-EDQTGLSGGVASFVCQATGEPKPRITW 41
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 53/266 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
P F ++P+ + G F CQ +PKP + W R ET + E V++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
P+ T + D +Y+ A+N +GE+ L RE Q+ P
Sbjct: 67 IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIW---------SHSGVQVKEDKRHKFSIDKDGH 168
P ++ + + C +P P + W S S ++K+ + I+
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
+ D GKY+ A N G ++ + + V + P F+ P++
Sbjct: 174 T-------------DQGKYECVATNSAGVRYSSPANLY------VRVQNVAPRFSILPMS 214
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
+ N + I C VG P P + W
Sbjct: 215 HEIMPGGN-VNITCVAVGSPMPYVKW 239
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 27/214 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P+ PQL+ + C NP P+I WF+ D V + G K L
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-------DFLPVDPSASNGRIKQL 161
Query: 69 V--ALELDDVIETDAGLYKVKAKNKMG-EVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
AL+++ ETD G Y+ A N G ++ NL ++ +AP F P +
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV---RVQNVAPRFSILPMSHEIM 218
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G + C P P V W +Q ED + + D LE+ DV +D+
Sbjct: 219 PGGNVNITCVAVGSPMPYVKW----MQGAED----LTPEDDMPVGRNVLELTDV--KDSA 268
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
Y A + LG A + S +P GTK
Sbjct: 269 NYTCVAMSSLGVIEAVAQITVKS----LPKAGTK 298
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
++ AP F+ P + G + C + +P P + W +G L+ + P+G
Sbjct: 202 QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE-----DDMPVGR 256
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAA 97
N LEL DV D+ Y A + +G + A
Sbjct: 257 N----VLELTDV--KDSANYTCVAMSSLGVIEA 283
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F++ P D+G+ + ++ PAP V W +G V+ D HK + + G
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---LH 62
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
SL V DAG Y AKN GE+ T+ L+
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF-RGETQLSEDTRTVMKTTPIGTNKY 67
P F Q P+ DEG + ++ P PD+ W+ G T S+D + I + K
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM-----IVSEKG 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L +L + V +DAG Y AKN+ GE ++ L+
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 28/197 (14%)
Query: 24 NRLIFECQLLCNPKPDIVW------FRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
N + F C NP P I W FRGE ++ I +L ++ V+
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----------IKLRHQQWSLVMESVV 188
Query: 78 ETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI 136
+D G Y +NK G + + L+ R + L P+ + G + F C++
Sbjct: 189 PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAVLGSDVEFHCKV 246
Query: 137 QADPAPTVIW-SH---SGVQVKEDKRHKFSIDKDGHSY-----FASLEIIDVTIEDAGKY 187
+D P + W H +G +V D ++ K + L + +VT EDAG+Y
Sbjct: 247 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 188 KVTAKNELGESNATISL 204
A N +G S+ + L
Sbjct: 307 TCLAGNSIGFSHHSAWL 323
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P P++ W +G + + + H+ K H + SL + V D G Y
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQW-SLVMESVVPSDRGNYTCVV 199
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+N+ G T +L+ + +P +P+ Q+ +D+ C++ + +P
Sbjct: 200 ENKFGSIRQTYTLDV-LERSP-----HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH 253
Query: 252 ISW 254
I W
Sbjct: 254 IQW 256
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
LA L KP +G+ F C +P PTV W G + RH+ + K Y
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----Y 68
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
++ EI V D G Y V +N G+ A +L
Sbjct: 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
A KP+ EG F C P P + W R LS R + TT K
Sbjct: 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-----K 67
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSR 105
Y E+ V +D G Y V +N G+ A L +
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 11/201 (5%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
AP F ++ + + C++ +PKP + W+R G+ +++ + ++ G +
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 60
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ ++A DD DA +Y+V+A N+ G V+ + +L L P L+
Sbjct: 61 QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 115
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID-VTIEDA 184
G+ + + P P + W + + ++ + + F SL + V +DA
Sbjct: 116 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDA 171
Query: 185 GKYKVTAKNELGESNATISLN 205
G Y V AKN G T+ L+
Sbjct: 172 GFYVVCAKNRFGIDQKTVELD 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 111 LAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
+AP F L+ ++R + + + C++ P P V W G ++ D K+ I +
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGL-KYRIQEFK 56
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVFTE 224
Y L I VT +DA Y+V A N+ G + T SL + P EG V
Sbjct: 57 GGYH-QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 115
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
R + I+ G+P+P I+W
Sbjct: 116 RGEV---------VSIKIPFSGKPDPVITW 136
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 11/201 (5%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
AP F ++ + + C++ +PKP + W+R G+ +++ + ++ G +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ ++A DD DA +Y+V+A N+ G V+ + +L L P L+
Sbjct: 63 QLIIASVTDD----DATVYQVRATNQGGSVSGTASLEVEVPAKIHL-PKTLEGMGAVHAL 117
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID-VTIEDA 184
G+ + + P P + W + + ++ + + F SL + V +DA
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDA 173
Query: 185 GKYKVTAKNELGESNATISLN 205
G Y V AKN G T+ L+
Sbjct: 174 GFYVVCAKNRFGIDQKTVELD 194
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 111 LAPTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
+AP F L+ ++R + + + C++ P P V W G ++ D K+ I +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLV---CKVTGHPKPIVKWYRQGKEIIADGL-KYRIQEFK 58
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD---SDDAPVPGEGTKPVFTE 224
Y L I VT +DA Y+V A N+ G + T SL + P EG V
Sbjct: 59 GGYH-QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
R + I+ G+P+P I+W
Sbjct: 118 RGEV---------VSIKIPFSGKPDPVITW 138
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHS 169
AP F+ KP ++ +G + EC+I A P P + W + VQ D+ + D G
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ-DNTGR- 72
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L I DV +DAG Y V+A NE G + L+
Sbjct: 73 --VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP F KPQ ++ EG+ + ECQ+ P P + W R + +T + + N
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI---SLYQDNTG 71
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104
V L + DV + DAG Y V A N+ G + L+ +
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 16 QLRQED--EGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVAL 71
QL+ E E ++ C P P+I W R +E +++ + +L
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 72 ELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
+ DV +D+G Y +A +++G S+ L+ AP F+ +I +G +
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFISNQTIYYSWEGNPIN 119
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
C ++++P ++ W + + G LEI + D G+Y TA
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI--LEIAPTSDNDFGRYNCTA 177
Query: 192 KNELG 196
N +G
Sbjct: 178 TNHIG 182
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
++AP F + EGN + C + NP I W R + L T +KT G
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMG 93
+ LE+ + D G Y A N +G
Sbjct: 158 ---MILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 12/185 (6%)
Query: 16 QLRQED--EGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVAL 71
QL+ E E ++ C P P+I W R +E +++ + +L
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 72 ELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
+ DV +D+G Y +A +++G S+ L+ AP F+ +I +G +
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFISNQTIYYSWEGNPIN 119
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
C ++++P ++ W + + G LEI + D G+Y TA
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI--LEIAPTSDNDFGRYNCTA 177
Query: 192 KNELG 196
N +G
Sbjct: 178 TNHIG 182
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
++AP F + EGN + C + NP I W R + L T +KT G
Sbjct: 98 EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMG 93
+ LE+ + D G Y A N +G
Sbjct: 158 ---MILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 22/190 (11%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
F+C P+P + W + + D R IG K A + +D V+ +D G Y
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 88
Query: 85 KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
+N+ G + + L+ R + L P+ + G + F C++ +DP P
Sbjct: 89 TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 146
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
+ W H +G ++ D I K L + +V+ EDAG+Y A N
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 195 LGESNATISL 204
+G S+ + L
Sbjct: 207 IGLSHHSAWL 216
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
K + F+C P PT+ W +G + K D R G+ +A+ II V D
Sbjct: 31 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 84
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
G Y +NE G N T L+ V +P+ ++ +++ C+
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 244 LVGEPEPTISW 254
+ +P+P I W
Sbjct: 139 VYSDPQPHIQW 149
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 23 GNRLIFECQLLCNPKPDIVWFR----GETQLSEDTR---TVMKTTPIG-TNKYLVALELD 74
G+ + F C++ +P+P I W + +++ D ++KT + T+K + L L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 75 DVIETDAGLYKVKAKNKMG 93
+V DAG Y A N +G
Sbjct: 190 NVSFEDAGEYTCLAGNSIG 208
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 22/190 (11%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
F+C P+P + W + + D R IG K A + +D V+ +D G Y
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 89
Query: 85 KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
+N+ G + + L+ R + L P+ + G + F C++ +DP P
Sbjct: 90 TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 147
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
+ W H +G ++ D I K L + +V+ EDAG+Y A N
Sbjct: 148 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 207
Query: 195 LGESNATISL 204
+G S+ + L
Sbjct: 208 IGLSHHSAWL 217
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
K + F+C P PT+ W +G + K D R G+ +A+ II V D
Sbjct: 32 AKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 85
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
G Y +NE G N T L+ V +P+ ++ +++ C+
Sbjct: 86 KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 139
Query: 244 LVGEPEPTISW 254
+ +P+P I W
Sbjct: 140 VYSDPQPHIQW 150
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 23 GNRLIFECQLLCNPKPDIVWFR----GETQLSEDTR---TVMKTTPIG-TNKYLVALELD 74
G+ + F C++ +P+P I W + +++ D ++KT + T+K + L L
Sbjct: 131 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 190
Query: 75 DVIETDAGLYKVKAKNKMG 93
+V DAG Y A N +G
Sbjct: 191 NVSFEDAGEYTCLAGNSIG 209
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+ P F K + +G F+C+++ P P V+W VKE + + D++G+
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN-- 97
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
SL I +V +D KY A N LGE+ T L
Sbjct: 98 -CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P FT+ + EG+ F+C++ P P+++WF+ + + E + G
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---- 97
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+L + +V D Y KA N +GE + L
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+K P + G F C+ +P P + W G +V + D DG
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFD-DGAGSVL 65
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
++ + V D Y+ TA N LGE N + L+ ++ PG P P K +
Sbjct: 66 RIQPLRVQ-RDEAIYECTATNSLGEINTSAKLSVLEEEQLPPG---FPSIDMGPQLKVVE 121
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
++ C G P+P ISW
Sbjct: 122 KARTATML-CAAGGNPDPEISW 142
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 26/201 (12%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
D P F + P+ + G F CQ PKP I W + ++S V++ G
Sbjct: 4 DSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDD-GAG 62
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
L L ++ D +Y+ A N +GE+ S L+ EQ+ P+ P ++
Sbjct: 63 SVLRIQPLR--VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVV 120
Query: 125 DDGKRLLFECRIQADPAPTVIW---------SHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
+ + C +P P + W + S ++K+ + I+ S
Sbjct: 121 EKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEES------ 174
Query: 176 IIDVTIEDAGKYKVTAKNELG 196
D GKY+ A N G
Sbjct: 175 -------DQGKYECVATNSAG 188
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
PS PQL+ ++ C NP P+I WF+ D V T G K L
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFK-------DFLPVDPATSNGRIKQL 161
Query: 69 V--ALELDDVIETDAGLYKVKAKNKMG-EVAASINLNFSREQIDG 110
AL+++ E+D G Y+ A N G +A NL ++ G
Sbjct: 162 RSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAG 206
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+G F+C+++ P P V+W VKE + + D++G+ SL I +V +D
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---CSLTISEVCGDDDA 111
Query: 186 KYKVTAKNELGESNATISL 204
KY A N LGE+ T L
Sbjct: 112 KYTCKAVNSLGEATCTAEL 130
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P FT+ EG+ F+C++ P P+++WF+ + + E + G
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN---- 97
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+L + +V D Y KA N +GE + L
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA---LELDDVIETDAGLY 84
F+C P P + W + + D R IG K A + +D V+ +D G Y
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKEFKPDHR-------IGGYKVRYATWSIIMDSVVPSDKGNY 88
Query: 85 KVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPT 143
+N+ G + + L+ R + L P+ + G + F C++ +DP P
Sbjct: 89 TCIVENEYGSINHTYQLDVVERSPHRPILQAGL--PANKTVALGSNVEFMCKVYSDPQPH 146
Query: 144 VIW-SH---SGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIEDAGKYKVTAKNE 194
+ W H +G ++ D I K L + +V+ EDAG+Y A N
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 195 LGESNATISL 204
+G S+ + L
Sbjct: 207 IGLSHHSAWL 216
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY-FASLEII--DVTIED 183
K + F+C P PT+ W +G + K D R G+ +A+ II V D
Sbjct: 31 AKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHR------IGGYKVRYATWSIIMDSVVPSD 84
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
G Y +NE G N T L+ V +P+ ++ +++ C+
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV------VERSPHRPILQAGLPANKTVALGSNVEFMCK 138
Query: 244 LVGEPEPTISW 254
+ +P+P I W
Sbjct: 139 VYSDPQPHIQW 149
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 23 GNRLIFECQLLCNPKPDIVWFR----GETQLSEDTR---TVMKTTPIG-TNKYLVALELD 74
G+ + F C++ +P+P I W + +++ D ++KT + T+K + L L
Sbjct: 130 GSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLR 189
Query: 75 DVIETDAGLYKVKAKNKMG 93
+V DAG Y A N +G
Sbjct: 190 NVSFEDAGEYTCLAGNSIG 208
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
L KP +G+ F C +P PTV W G + RH+ + K Y ++
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK----YKSTF 66
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
EI V D G Y V +N G+ A +L
Sbjct: 67 EISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
KP+ EG F C P P + W R LS R + TT KY E+
Sbjct: 14 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-----KYKSTFEI 68
Query: 74 DDVIETDAGLYKVKAKNKMGEVAASINLNFSR 105
V +D G Y V +N G+ A L +
Sbjct: 69 SSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 100
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 5 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 57
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
K +L ++ V+ +D G Y +N+ G + + +L+ R + + L P
Sbjct: 58 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL--P 115
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
+ G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 116 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 169
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
I +VT EDAG+Y A N +G S + L P PG
Sbjct: 170 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 216
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 29 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 85
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 86 ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 139
Query: 252 ISW 254
I W
Sbjct: 140 IQW 142
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 42/231 (18%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
K +L ++ V+ +D G Y +N+ G + + +L+ R + + L P
Sbjct: 60 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
+ G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
I +VT EDAG+Y A N +G S + L P PG
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 88 ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
I W
Sbjct: 142 IQW 144
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+ KP + +G+ F CR+ A P V W ++K+ K+ +G+ Y
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV--KYMKRYNGNDY-- 432
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV 221
L I V +D G+Y V AKN G + LN P+ E +P+
Sbjct: 433 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPM 481
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F KP + EG F C+++ + P + W + + +L + + + + N Y
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR---YNGNDY- 432
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE 106
L ++ V D G Y V+AKN G + LN +R
Sbjct: 433 -GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRH 469
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
L++P +R E E ++ +P PT+ W H+G ++E K ++G L
Sbjct: 14 LEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLL 68
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPV 213
T + G Y + AKN LG +N TI+ +F + PV
Sbjct: 69 FNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 106
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
A S QK + G + F C+ +P+P I WFR + E+ + ++K G+N
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 151
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE 94
L + ++I +D G Y +A NK GE
Sbjct: 152 -TELTVRNIINSDGGPYVCRATNKAGE 177
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 30 CQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYK 85
C++ +P P + W ++ T I N++ + L++ ++ ++D G+Y+
Sbjct: 24 CRVSSSPAPAVSWLYHNEEV----------TTISDNRFAMLANNNLQILNINKSDEGIYR 73
Query: 86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR---QEDDGKRLLFECRIQADPAP 142
+ G V A ++F + P + P + G+ + F CR P P
Sbjct: 74 CE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 128
Query: 143 TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
+ W +G ++E++++ I K ++ II+ D G Y A N+ GE
Sbjct: 129 AISWFRNGKLIEENEKY---ILKGSNTELTVRNIIN---SDGGPYVCRATNKAGE 177
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 114 TFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
TF + S ++ G+ CR+ + PAP V W + +V ++F++ + + +
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233
+ D I + +V A+ E+ + + +N VP + P + ++ +
Sbjct: 64 INKSDEGIYRC-EGRVEARGEIDFRDIIVIVN-------VPPAISMPQKSFNATAERGE- 114
Query: 234 DLNDIVIECRLVGEPEPTISW 254
++ CR G PEP ISW
Sbjct: 115 ---EMTFSCRASGSPEPAISW 132
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 4 AEDFAPSFTQK-PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
A +APS K P G + EC NP P I W + + T + + P+
Sbjct: 202 ARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD---GSQTSKWLSSEPL 258
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
L + +V D G Y+ +A+N G + I P +L +
Sbjct: 259 --------LHIQNVDFEDEGTYECEAENIKGRD------TYQGRIIIHAQPDWLDVITDT 304
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+ D G L + C P P V W G + R I+ G L + +E
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR----IEVSG----GELRFSKLVLE 356
Query: 183 DAGKYKVTAKNELGESNATISLN 205
D+G Y+ A+N+ G A+ L
Sbjct: 357 DSGMYQCVAENKHGTVYASAELT 379
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 99/269 (36%), Gaps = 51/269 (18%)
Query: 7 FAPSFTQKPQLRQEDEGN---RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
+ P F ++P EG+ ++ C+ NP W T+L K P
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL--------KMGPDS 54
Query: 64 TNKYLVALEL---DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
+ LVA +L + V DAG Y+ A N G V SRE L FL++ S
Sbjct: 55 RYR-LVAGDLVISNPVKAKDAGSYQCVATNARGTVV-------SREA--SLRFGFLQEFS 104
Query: 121 IRQED-----DGKRLLFECRIQAD-PAPTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFA 172
+ D +G ++F C PA + W + + D R +F G+ Y A
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR-RFVSQTTGNLYIA 163
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATI-----SLNFDSDDAPVPGEGTKPVFTE--R 225
E D+ G Y A + + ++ L+ ++DA K F
Sbjct: 164 KTEASDL-----GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 226 PVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+T Q + +EC G P P I W
Sbjct: 219 ALTGQM------VTLECFAFGNPVPQIKW 241
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 75/213 (35%), Gaps = 47/213 (22%)
Query: 54 RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSR-----EQI 108
R V +TT N Y+ E D+ G Y A + + + S+ FS+ E
Sbjct: 151 RFVSQTT---GNLYIAKTEASDL-----GNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202
Query: 109 DGLAPTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
AP+ K P+ G+ + EC +P P + W +D
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR--------------KLDGSQ 248
Query: 168 HSYFAS----LEIIDVTIEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPV 221
S + S L I +V ED G Y+ A+N G I ++ D V
Sbjct: 249 TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV-------- 300
Query: 222 FTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+T D +D+ C G+P P + W
Sbjct: 301 -----ITDTEADIGSDLRWSCVASGKPRPAVRW 328
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 6 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 58
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
K +L ++ V+ +D G Y +N+ G + + +L+ R + L P
Sbjct: 59 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 116
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
+ G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 117 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 170
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
I +VT EDAG+Y A N +G S + L P PG
Sbjct: 171 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 217
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 86
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 87 ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 140
Query: 252 ISW 254
I W
Sbjct: 141 IQW 143
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 45/232 (19%)
Query: 3 IAEDF---------APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL 49
+AEDF AP +T + +L N + F C NP P + W + +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 50 SEDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSR 105
++ R IG K +L ++ V+ +D G Y +N+ G + + +L+ R
Sbjct: 61 KQEHR-------IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
+ + L P+ G + F C++ +D P + W +K +++
Sbjct: 114 SRHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGP 165
Query: 166 DGHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
DG Y L+ + +VT DAG+Y N +G++N + L
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 95
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 96 ENEYGSINHTYHLDV------VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 252 ISW 254
I W
Sbjct: 150 IQW 152
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
A S QK + G + F C+ +P+P I WFR + E+ + ++K G+N
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN-- 247
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE 94
L + ++I +D G Y +A NK GE
Sbjct: 248 -TELTVRNIINSDGGPYVCRATNKAGE 273
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 28/235 (11%)
Query: 23 GNRLIFECQLLCNPKPDIVWF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
G F C + P+ I W+ +GE +S V K G L + IE D
Sbjct: 19 GESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKE---GVRSRLTIYNAN--IE-D 71
Query: 81 AGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD 139
AG+Y+ +A + G+ A++ L ++ TF + S ++ G+ CR+ +
Sbjct: 72 AGIYRCQATDAKGQTQEATVVLEIYQKL------TFREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
PAP V W + +V ++F++ + + ++ D I + +V A+ E+ +
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-EGRVEARGEIDFRD 184
Query: 200 ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ +N VP + P + ++ + ++ CR G PEP ISW
Sbjct: 185 IIVIVN-------VPPAISMPQKSFNATAERGE----EMTFSCRASGSPEPAISW 228
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 30 CQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYK 85
C++ +P P + W ++ T I N++ + L++ ++ ++D G+Y+
Sbjct: 120 CRVSSSPAPAVSWLYHNEEV----------TTISDNRFAMLANNNLQILNINKSDEGIYR 169
Query: 86 VKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR---QEDDGKRLLFECRIQADPAP 142
+ G V A ++F + P + P + G+ + F CR P P
Sbjct: 170 CE-----GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 224
Query: 143 TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
+ W +G ++E++++ I K ++ II+ D G Y A N+ GE
Sbjct: 225 AISWFRNGKLIEENEKY---ILKGSNTELTVRNIIN---SDGGPYVCRATNKAGE 273
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 42/231 (18%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
K +L ++ V+ +D G Y +N+ G + + +L+ R + L P
Sbjct: 60 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
+ G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
I +VT EDAG+Y A N +G S + L P PG
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 88 ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
I W
Sbjct: 142 IQW 144
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 40/230 (17%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 7 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 59
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
K +L ++ V+ +D G Y +N+ G + + +L+ E+ P+
Sbjct: 60 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV-ERWPHRPILQAGLPA 118
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE----- 175
G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGVN 172
Query: 176 ----------IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
I +VT EDAG+Y A N +G S + L P PG
Sbjct: 173 TTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV----LPAPG 218
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 88 ENEYGSINHTYHLDV------VERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
I W
Sbjct: 142 IQW 144
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
C++ P+P I WF+ +S + + + + E D G Y
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIW 146
AKN++G+ + + QI L F +P + G+ L EC + P PT+IW
Sbjct: 88 AKNRVGQAVS----RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 147 SHSGVQVKEDKRHKFSIDK-----DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
GV + + K F DG +L I +V D G YK A+N +G ++
Sbjct: 144 IKDGVPLDDLKAMSFGASSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 202 IS 203
+
Sbjct: 200 YA 201
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 132 FECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
C+++ P PT+ W G V E K H+ KDG +F + +D G+Y
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDGALFFYRT-MQGKKEQDGGEYWC 86
Query: 190 TAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-LV 245
AKN +G++ +A++ + DD V + T+ E ++EC
Sbjct: 87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE------------TALLECGPPK 134
Query: 246 GEPEPTISW 254
G PEPT+ W
Sbjct: 135 GIPEPTLIW 143
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 211 APVPGEGTKPVFTERP----VTKQSDDDLNDIVIECRLVGEPEPTISW 254
AP+ G+ P E P V K LN C++ G+PEPTI W
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEW 43
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
C++ P+P I WF+ +S + + + + E D G Y
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIW 146
AKN++G+ + + QI L F +P + G+ L EC + P PT+IW
Sbjct: 88 AKNRVGQAVS----RHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 147 SHSGVQVKEDKRHKFSIDK-----DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
GV + + K F DG +L I +V D G YK A+N +G ++
Sbjct: 144 IKDGVPLDDLKAMSFGASSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 202 IS 203
+
Sbjct: 200 YA 201
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 132 FECRIQADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
C+++ P PT+ W G V E K H+ KDG +F + +D G+Y
Sbjct: 29 LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDGALFFYRT-MQGKKEQDGGEYWC 86
Query: 190 TAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-LV 245
AKN +G++ +A++ + DD V + T+ E ++EC
Sbjct: 87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE------------TALLECGPPK 134
Query: 246 GEPEPTISW 254
G PEPT+ W
Sbjct: 135 GIPEPTLIW 143
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 9/48 (18%)
Query: 211 APVPGEGTKPVFTERP----VTKQSDDDLNDIVIECRLVGEPEPTISW 254
AP+ G+ P E P V K LN C++ G+PEPTI W
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEW 43
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 91/232 (39%), Gaps = 45/232 (19%)
Query: 3 IAEDF---------APSFTQKPQLRQEDEG----NRLIFECQLLCNPKPDIVWFRGETQL 49
+AEDF AP +T ++ + N + F C NP P + W + +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 50 SEDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSR 105
++ R IG K +L ++ V+ +D G Y +N+ G + + +L+ R
Sbjct: 61 KQEHR-------IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
+ L P+ G + F C++ +D P + W +K +++
Sbjct: 114 SPHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGP 165
Query: 166 DGHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
DG Y L+ + +VT DAG+Y N +G++N + L
Sbjct: 166 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 95
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 96 ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 149
Query: 252 ISW 254
I W
Sbjct: 150 IQW 152
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
G P FL++P + G +C + +P P V+W G Q+ +R F D H
Sbjct: 11 QGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
L + DAG Y A+N
Sbjct: 71 ----GLLLTAALPTDAGVYVCRARN 91
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F ++P+ + G +C +L P P +VW +G QL+ R + P ++
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL---SFPADGAEH- 70
Query: 69 VALELDDVIETDAGLYKVKAKN 90
L L + TDAG+Y +A+N
Sbjct: 71 -GLLLTAALPTDAGVYVCRARN 91
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
P F ++P+ + G F CQ +PKP + W R ET + E V++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
P+ T + D +Y+ A+N +GE+ L RE Q+ P
Sbjct: 67 IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P ++ + + C +P P + W + V S + +L+I
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA----SNGRIKQLRSGALQIE 169
Query: 178 DVTIEDAGKYKVTAKNELG 196
D GKY+ A N G
Sbjct: 170 SSEETDQGKYECVATNSAG 188
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+K+P + G F C+ DP P V W+ G +V + D S A
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD---ESAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L I + T D Y+ A+N +GE L +D G P P K
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
+ ++ C G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+KKP + G F C+ DP P V W+ G +V + D+ S A
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDE---SAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L I + T D Y+ A+N GE L +D PG P P K
Sbjct: 64 VLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
+ ++ C G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 71/201 (35%), Gaps = 32/201 (15%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
P F +KP + G F CQ +PKP + W R ET + E V++
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK- 117
P+ T + D +Y+ A+N GEV L RE D L P F
Sbjct: 67 IQPLRTPR-------------DENIYECVAQNPHGEVTVHAKLTVLRE--DQLPPGFPNI 111
Query: 118 --KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
P ++ + + C +P P + W + V S + L+
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPST----SNGRIKQLRSGGLQ 167
Query: 176 IIDVTIEDAGKYKVTAKNELG 196
I D GKY+ A N G
Sbjct: 168 IESSEETDQGKYECVASNSAG 188
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 119 PSIRQEDD------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P IR+E G+ C+I P P + W G ++ + +++K S D H
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTH---- 63
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
+L ++ ED G Y A NE+GE + L + PG P+ ++
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPG---------YPLKEKYY 114
Query: 233 DDLNDIV-IECRLVGEPEPTISW 254
+ + + +G P P ++W
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMTW 137
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
CQ++ P PDI W+R +L + + M + G L + + + D G+Y
Sbjct: 27 LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD--GRTHTLTVMTEE---QEDEGVYTCI 81
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE---DDGKRLLFECRIQADPAPTV 144
A N++GEV S L P F ++++ G L P P +
Sbjct: 82 ATNEVGEVETSSKLLLQ------ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYKVTAKNELGESNATI 202
W H ++ + +I + ++ L + +V + AGKYKV N G +A +
Sbjct: 136 TWFHGQKLLQNSE----NITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAIL 190
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+ KP + +G+ F CR+ A P V W ++K+ K+ +G+ Y
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV--KYMKRYNGNDY-- 538
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L I V +D G+Y V AKN G + LN
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F KP + EG F C+++ + P + W + + +L + + + + N Y
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR---YNGNDY- 538
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104
L ++ V D G Y V+AKN G + LN +
Sbjct: 539 -GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F + +P PT IW+ G + + ++K S DK G +F LEI D+G Y T
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG--FF--LEIHKTDTSDSGLYTCTV 81
Query: 192 KNELGESNATISLNF 206
KN G +++ L
Sbjct: 82 KNSAGSVSSSCKLTI 96
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 21/84 (25%)
Query: 28 FECQLLCNPKPDIVWFR--------GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET 79
F + P+P +W + G+ +LSED K LE+ +
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-------------KGGFFLEIHKTDTS 72
Query: 80 DAGLYKVKAKNKMGEVAASINLNF 103
D+GLY KN G V++S L
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 28/199 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF---------RGET-QLSEDTRTVMK 58
P F ++P+ + G F CQ +PKP + W R ET + E V++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLK 117
P+ T + D +Y+ A+N +GE+ L RE Q+ P
Sbjct: 67 IQPLRTPR-------------DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P ++ + + C +P P + W + V S + +L+I
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA----SNGRIKQLRSGALQIE 169
Query: 178 DVTIEDAGKYKVTAKNELG 196
D GKY+ A N G
Sbjct: 170 SSEETDQGKYECVATNSAG 188
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P F+K+P + G F C+ DP P V W+ G +V + D S A
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFD---ESAGA 63
Query: 173 SLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L I + T D Y+ A+N +GE L +D G P P K
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSG---FPNIDMGPQLKVV 120
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
+ ++ C G P+P I+W
Sbjct: 121 ERTRTATML-CAASGNPDPEITW 142
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ F +Q+ P V W H+GV+++E + I S +LEI+D +D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSK----IHYTNTSGVLTLEILDCHTDDSGT 78
Query: 187 YKVTAKNELGESNATISLNFDSDD 210
Y+ N GE++ +L+ D
Sbjct: 79 YRAVCTNYKGEASDYATLDVTGGD 102
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
D AP T + + + G F + P ++ W+ +L E ++ + T G
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSK-IHYTNTSG-- 62
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104
++ LE+ D D+G Y+ N GE + L+ +
Sbjct: 63 --VLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 38/214 (17%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P W + + ++ R IG
Sbjct: 7 APYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHR-------IG 59
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF-SREQIDGLAPTFLKKP 119
K +L + V+ +D G Y +N+ G + + +L+ R + L P
Sbjct: 60 GYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGL--P 117
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE---- 175
+ G + F C++ +D P + W +K +++ DG Y L+
Sbjct: 118 ANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPDGLPYLKVLKAAGV 171
Query: 176 -----------IIDVTIEDAGKYKVTAKNELGES 198
I +VT EDAG+Y A N +G S
Sbjct: 172 NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS 205
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT W +G + K++ R ++ H SL V D G Y
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH---WSLIXESVVPSDKGNYTCVV 87
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ + +P +P+ S D+ C++ + +P
Sbjct: 88 ENEYGSINHTYHLDV-VERSP-----HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 252 ISW 254
I W
Sbjct: 142 IQW 144
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--EDTRTVMKT 59
G + AP F K + + EG + F C++ NPKP I WF+ Q+S D T+ +
Sbjct: 1 GGSNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD 60
Query: 60 TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ + A LD D G Y + A N G V+ + L
Sbjct: 61 LDGTCSLHTTASTLD-----DDGNYTIMAANPQGRVSCTGRL 97
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
+ AP F K + +G + F CR+ +P P + W G Q+ H ++I +D
Sbjct: 4 NATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDLD 62
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
SL T++D G Y + A N G + T L
Sbjct: 63 GT-CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRL 97
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 39/210 (18%)
Query: 23 GNRLIFECQLLCNPKPDIVW------FRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV 76
N + F C NP P I W FRGE ++ I +L ++ V
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG----------IKLRHQQWSLVMESV 79
Query: 77 IETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
+ +D G Y +NK G + + L+ R + L P+ + G + F C+
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL--PANQTAVLGSDVEFHCK 137
Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--------------ASLEIIDVTI 181
+ +D P + W +K + + + DG Y L + +V+
Sbjct: 138 VYSDAQPHIQW------LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE 191
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDA 211
D G+Y A N +G + L+ A
Sbjct: 192 RDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P P++ W +G + + + H+ K H + SL + V D G Y
Sbjct: 35 FRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQW-SLVMESVVPSDRGNYTCVV 91
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+N+ G T +L+ + +P +P+ Q+ +D+ C++ + +P
Sbjct: 92 ENKFGSIRQTYTLDV-LERSP-----HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH 145
Query: 252 ISW 254
I W
Sbjct: 146 IQW 148
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
G P FL+ P + G +C + +P P V+W G Q+ +R F D H
Sbjct: 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
L + DAG Y A+N
Sbjct: 70 ----GLLLTAALPTDAGVYVCRARN 90
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F + P+ + G +C +L P P +VW +G QL+ R G L
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD--GAEHGL 71
Query: 69 VALELDDVIETDAGLYKVKAKN 90
+ L + TDAG+Y +A+N
Sbjct: 72 L---LTAALPTDAGVYVCRARN 90
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--EDTRTVMKTTPIGTN 65
AP F K + + EG + F C++ NPKP I WF+ Q+S D T+ + +
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ A LD D G Y + A N G ++ + L
Sbjct: 68 LHTTASTLD-----DDGNYTIMAANPQGRISCTGRL 98
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP F K + +G + F CR+ +P P + W G Q+ H ++I +D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDH-YTIQRDLDGT- 65
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
SL T++D G Y + A N G + T L
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
G P FL+ P + G +C + +P P V+W G Q+ +R F D H
Sbjct: 11 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 70
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKN 193
L + DAG Y A+N
Sbjct: 71 ----GLLLTAALPTDAGVYVCRARN 91
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P F + P+ + G +C +L P P +VW +G QL+ R + P ++
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL---SFPADGAEH- 70
Query: 69 VALELDDVIETDAGLYKVKAKN 90
L L + TDAG+Y +A+N
Sbjct: 71 -GLLLTAALPTDAGVYVCRARN 91
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 45/231 (19%)
Query: 4 AEDF---------APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS 50
AEDF AP +T + +L N + F C NP P W + +
Sbjct: 1 AEDFVSENSNNKRAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFK 60
Query: 51 EDTRTVMKTTPIGTNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSRE 106
++ R IG K +L + V+ +D G Y +N+ G + + +L+ R
Sbjct: 61 QEHR-------IGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS 113
Query: 107 QIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
+ L P+ G + F C++ +D P + W +K +++ D
Sbjct: 114 PHRPILQAGL--PANASTVVGGDVEFVCKVYSDAQPHIQW------IKHVEKNGSKYGPD 165
Query: 167 GHSYFASLE-------------IIDVTIEDAGKYKVTAKNELGESNATISL 204
G Y L+ + +VT DAG+Y N +G++N + L
Sbjct: 166 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 216
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT W +G + K++ R ++ H SL V D G Y
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH---WSLIXESVVPSDKGNYTCVV 94
Query: 192 KNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPT 251
+NE G N T L+ V +P+ S D+ C++ + +P
Sbjct: 95 ENEYGSINHTYHLDV------VERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 148
Query: 252 ISW 254
I W
Sbjct: 149 IQW 151
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 113 PTF---LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
PTF L S+R +G+ ++ R+Q +P P V W + V+ D+R +F+ + +G
Sbjct: 6 PTFKVSLMDQSVR---EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR-RFAEEAEGG- 60
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD 209
L I+ DAG Y A NE G L +
Sbjct: 61 -LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
EG +I ++ PKP + W R + D R + G L L + DA
Sbjct: 19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG----LCRLRILAAERGDA 74
Query: 82 GLYKVKAKNKMG 93
G Y KA N+ G
Sbjct: 75 GFYTCKAVNEYG 86
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
QS + D+++ R+ GEP+P +SW
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVVSW 39
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQV-KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ + C P PT+ W+ G + +ED K+S + DG + L I V D
Sbjct: 28 SQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG----SELIIKKVDKSDEA 83
Query: 186 KYKVTAKNELGESNATISL 204
+Y A+N+ GE +ATI L
Sbjct: 84 EYICIAENKAGEQDATIHL 102
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 111 LAPT--FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
+APT FL+ P+ D + F ++ +P P + W ++G + E K I H
Sbjct: 3 MAPTITFLESPT---SDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 169 S-YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
+ Y L++ + T + G Y + AKNE G+ IS +F
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 35 NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
NPKP + WF L+E K +Y L+LD+ + G Y + AKN+ G+
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Query: 95 VAASINLNF 103
I+ +F
Sbjct: 88 DEKQISAHF 96
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
P + +GK L C + DP P V W + + D + +YF I
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFT---ING 285
Query: 179 VTIEDAGKYKVTAKNELGE--SNATISL 204
V+ D+GKY + KN+ G S+ T+S+
Sbjct: 286 VSTADSGKYGLVVKNKYGSETSDFTVSV 313
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD 74
P + EG L C + +P P++ W + E L+ D +K G Y ++
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA-GRTAYFT---IN 284
Query: 75 DVIETDAGLYKVKAKNKMG 93
V D+G Y + KNK G
Sbjct: 285 GVSTADSGKYGLVVKNKYG 303
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 41/269 (15%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPD--IVWFRGETQLSEDTRTVMKTTPIGTN 65
P F + E N L+ +C++ N K + IVW++ E ++S D + K
Sbjct: 7 GPHFVEYLSWEVTGECNVLL-KCKV-ANIKKETHIVWYKDEREISVDEKHDFKDG----- 59
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ L + + + DAG+Y+V K+ G+ + + L E L KK ++ D
Sbjct: 60 --ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL--VDEAFKELMMEVCKKIALSATD 115
Query: 126 -------DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
+G +L + V WSH+G ++ R K + G + L+I +
Sbjct: 116 LKIQSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRVKTGVT--GEQIW--LQINE 170
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDD-----------APVPGEGTKPVFTERP- 226
T D GKY + + T+ L+ + D A + + V P
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230
Query: 227 -VTKQSDDDLNDIVIECRLVGEPEPTISW 254
VT Q LN + C + G+P P +SW
Sbjct: 231 VVTIQEGKALN---LTCNVWGDPPPEVSW 256
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 35 NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
NPKP + WF L+E K +Y L+LD+ + G Y + AKN+ G+
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Query: 95 VAASINLNF 103
I+ +F
Sbjct: 88 DEKQISAHF 96
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 114 TFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS-YFA 172
TFL+ P+ D + F ++ +P P + W ++G + E K I H+ Y
Sbjct: 8 TFLESPT---SDHHWCIPF--TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHG 62
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
L++ + T + G Y + AKNE G+ IS +F
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 29/209 (13%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRGETQLSEDTRTVMK 58
I E + S + P L Q+ + LLC P P W++ + V+
Sbjct: 203 ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK- 117
+ L+ + D + D+G Y N +G + L + AP K
Sbjct: 263 DRVKQVSGTLI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-------APLSAKI 312
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P + D G+ +F C+ +P TV W G + GHS + L I
Sbjct: 313 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-------------GHSE-SVLRIE 358
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNF 206
V ED G Y+ +N+ + A+ L
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P ++KP LL C Q PAP+ W + ++ ++ ++
Sbjct: 215 PALVQKPLELMVAHTISLL--CPAQGFPAPSFRW-YKFIE-GTTRKQAVVLNDRVKQVSG 270
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
+L I D +ED+GKY N +G + L AP+ + P Q+
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---APLSAKIDPPT--------QTV 319
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
D V C+ G P T+SW
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSW 341
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 22/236 (9%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
EC+ NP P+I+W R + D + + + G + D E A +Y
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ---ADPAPTV 144
A+N+ G + S +++ K+ IR G + +C I AD V
Sbjct: 84 ARNQFGSI-ISRDVHVRAVVAQYYEADVNKEHVIR----GNSAVIKCLIPSFVADFVEVV 138
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTIEDAGK-YKVTAKNEL-GESN 199
W E++ + + DG L I +V ED K Y+ K+ L GE+
Sbjct: 139 SW-----HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 200 ATISLNFDSDDAPVPGEGTK-PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + P+ + P ++P+ + I + C G P P+ W
Sbjct: 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMV---AHTISLLCPAQGFPAPSFRW 246
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
PVF + P + + IEC+ G P P I W
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 38
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 29/209 (13%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCN----PKPDIVWFRGETQLSEDTRTVMK 58
I E + S + P L Q+ + LLC P P W++ + V+
Sbjct: 209 ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 268
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK- 117
+ L+ + D + D+G Y N +G + L + AP K
Sbjct: 269 DRVKQVSGTLI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-------APLSAKI 318
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P + D G+ +F C+ +P TV W G + GHS + L I
Sbjct: 319 DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI-------------GHSE-SVLRIE 364
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNF 206
V ED G Y+ +N+ + A+ L
Sbjct: 365 SVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P ++KP LL C Q PAP+ W + ++ ++ ++
Sbjct: 221 PALVQKPLELMVAHTISLL--CPAQGFPAPSFRW-YKFIE-GTTRKQAVVLNDRVKQVSG 276
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSD 232
+L I D +ED+GKY N +G + L AP+ + P Q+
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT---APLSAKIDPPT--------QTV 325
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
D V C+ G P T+SW
Sbjct: 326 DFGRPAVFTCQYTGNPIKTVSW 347
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 22/236 (9%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
EC+ NP P+I+W R + D + + + G + D E A +Y
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 89
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ---ADPAPTV 144
A+N+ G + S +++ K+ IR G + +C I AD V
Sbjct: 90 ARNQFGSI-ISRDVHVRAVVAQYYEADVNKEHVIR----GNSAVIKCLIPSFVADFVEVV 144
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTIEDAGK-YKVTAKNEL-GESN 199
W E++ + + DG L I +V ED K Y+ K+ L GE+
Sbjct: 145 SW-----HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 199
Query: 200 ATISLNFDSDDAPVPGEGTK-PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + P+ + P ++P+ + I + C G P P+ W
Sbjct: 200 LSATKGRLVITEPISSSAPRTPALVQKPLELMV---AHTISLLCPAQGFPAPSFRW 252
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G+ PVF + P + + IEC+ G P P I W
Sbjct: 5 GDQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 44
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
K+L L +D V +D GLY A + + N F R S+ +
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G+R+ + P P + W +G+ ++ + H K GH L I++V+ D G
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN--HTI---KAGH----VLTIMEVSERDTG 394
Query: 186 KYKVTAKNELGE 197
Y V N + +
Sbjct: 395 NYTVILTNPISK 406
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 1 MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
+ + E AP+ T + + G + C NP P I+WF+ L ED+ V+K
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD- 717
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93
G L + V + D GLY +A + +G
Sbjct: 718 --GNRN----LTIRRVRKEDEGLYTCQACSVLG 744
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 39 DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
D +W T S T ++ +EL + D G Y A+++ +
Sbjct: 607 DTLWKLNATMFSNSTNDIL------------IMELKNASLQDQGDYVCLAQDRKTKKRHC 654
Query: 99 INLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR 158
+ + ++ +APT + G+ + C +P P ++W + ED
Sbjct: 655 VVRQLT--VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG 712
Query: 159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196
+ KDG+ +L I V ED G Y A + LG
Sbjct: 713 ---IVLKDGNR---NLTIRRVRKEDEGLYTCQACSVLG 744
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
P + +GK L C + DP P V W + + + + +YF I
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFT---ING 180
Query: 179 VTIEDAGKYKVTAKNELGE--SNATISL 204
V+ D+GKY + KN+ G S+ T+S+
Sbjct: 181 VSTADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD 74
P + EG L C + +P P++ W + E L++ +K G Y ++
Sbjct: 124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-GRTAYFT---IN 179
Query: 75 DVIETDAGLYKVKAKNKMG 93
V D+G Y + KNK G
Sbjct: 180 GVSTADSGKYGLVVKNKYG 198
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 20/124 (16%)
Query: 144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
V WSH+G ++ R K + G + L+I + T D GKY + + T+
Sbjct: 35 VNWSHNGSAIRYSDRVKTGVT--GEQIW--LQINEPTPNDKGKYVMELFDGKTGHQKTVD 90
Query: 204 LNFDSDD-----------APVPGEGTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEP 250
L+ + D A + + V P VT Q LN + C + G+P P
Sbjct: 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN---LTCNVWGDPPP 147
Query: 251 TISW 254
+SW
Sbjct: 148 EVSW 151
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 1 MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
+ + E AP+ T + + G + C NP P I+WF+ L ED+ V+K
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-- 60
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93
N+ L + V + D GLY +A + +G
Sbjct: 61 --DGNRNLT---IRRVRKEDEGLYTCQACSVLG 88
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
++ +APT + G+ + C +P P ++W + ED + KDG
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI---VLKDG 62
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELG 196
+ +L I V ED G Y A + LG
Sbjct: 63 NR---NLTIRRVRKEDEGLYTCQACSVLG 88
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
+AP Q P EGN++ C++ P I WFR L + +K +
Sbjct: 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSAS 76
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGE 94
Y LE+ E D G Y A N++G+
Sbjct: 77 Y---LEVTPDSENDFGNYNCTAVNRIGQ 101
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
K+L L +D V +D GLY A + + N F R S+ +
Sbjct: 157 KFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRVHEKPFVAFGSGMESLVEAT 213
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G+R+ + P P + W +G+ ++ + H K GH L I++V+ D G
Sbjct: 214 VGERVRIPAKYLGYPPPEIKWYKNGIPLESN--HTI---KAGH----VLTIMEVSERDTG 264
Query: 186 KYKVTAKNELGE 197
Y V N + +
Sbjct: 265 NYTVILTNPISK 276
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV---KEDKRHKFSIDKDG 167
P ++ PS G+ C+ + P PT+ W G +V K+D R + G
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
+F + + D G Y A+N LGE+
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL---SEDTRTVMKTTP 61
EDF P + P +G C+ P P I W++G ++ +D R+ P
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA 97
G+ +L + D G+Y A+N +GE +
Sbjct: 66 SGSLFFLRIVH-GRKSRPDEGVYVCVARNYLGEAVS 100
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 23 GNRLIFECQLLCNPK-PDIVWF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET 79
G F CQ+ + K DI WF GE +LS + + + + + + L + +
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGE-KLSPNQQ---RISVVWNDDDSSTLTIYNANID 72
Query: 80 DAGLYKVKAKNKMG-EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
DAG+YK + G + A++N+ ++ + F P+ ++ +G+ + C + +
Sbjct: 73 DAGIYKCVVTAEDGTQSEATVNVKIFQKLM------FKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
PT+IW H G V K +F + + + L+I + D G Y+ +
Sbjct: 127 SLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----LQIRGIKKTDEGTYRCEGR 175
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVI--WSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
PS + G+ F C++ D I +S +G ++ +++ + D S ++L I
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS--STLTI 66
Query: 177 IDVTIEDAGKYKVTAKNELG-ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
+ I+DAG YK E G +S AT+++ K +F P T Q +
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKI----------FQKLMFKNAP-TPQEFKEG 115
Query: 236 NDIVIECRLVGEPEPTISW 254
D VI C +V PTI W
Sbjct: 116 EDAVIVCDVVSSLPPTIIW 134
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRG-ETQLSEDTRTVMKTTPIGTNKYL 68
F P ++ EG + C ++ + P I+W +G + L +D R + + +N Y
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----VLSNNY- 156
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQI 108
L++ + +TD G Y+ + G + A +NF Q+
Sbjct: 157 --LQIRGIKKTDEGTYRCE-----GRILARGEINFKDIQV 189
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
+ APSF+ + EG + +C + P P I W + + T G
Sbjct: 9 EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLN----GQPIQYARSTCEAGVA 64
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
+ L + D + D G Y A+N +G+V+ S
Sbjct: 65 E----LHIQDALPEDHGTYTCLAENALGQVSCS 93
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+AP+F +G+ + +C ++ P P + W +G ++ + S + G
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR----STCEAG--- 62
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
A L I D ED G Y A+N LG+ + +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCS 93
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 32 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 88
Query: 192 KNELGESNATISL 204
+NE G N T L
Sbjct: 89 ENEYGSINHTYHL 101
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 8 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 60
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
K +L ++ V+ +D G Y +N+ G + + +L
Sbjct: 61 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 101
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 84
Query: 192 KNELGESNATISL 204
+NE G N T L
Sbjct: 85 ENEYGSINHTYHL 97
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 56
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
K +L ++ V+ +D G Y +N+ G + + +L
Sbjct: 57 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
F C +P PT+ W +G + K++ R ++ H SL + V D G Y
Sbjct: 33 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH---WSLIMESVVPSDKGNYTCVV 89
Query: 192 KNELGESNATISL 204
+NE G N T L
Sbjct: 90 ENEYGSINHTYHL 102
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 8 APSFTQ----KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T + +L N + F C NP P + W + + ++ R IG
Sbjct: 9 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR-------IG 61
Query: 64 TNKY---LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
K +L ++ V+ +D G Y +N+ G + + +L
Sbjct: 62 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 102
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 25/178 (14%)
Query: 30 CQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89
C P P W++ + V+ + L+ + D + D+G Y
Sbjct: 237 CMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI---IKDAVVEDSGKYLCVVN 293
Query: 90 NKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQADPAPTVIWSH 148
N +G + L + AP K P + D G+ +F C+ +P TV W
Sbjct: 294 NSVGGESVETVLTVT-------APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 346
Query: 149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
G + GHS + L I V ED G Y+ +N+ + A+ L
Sbjct: 347 DGKAI-------------GHSE-SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 112 APTFLKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
P FLK+P+ R + + EC+ +P P +IW S D I DG
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 171 FASLEIIDVTIE-DAGKYKVTAKNELG 196
F D E A Y A+N+ G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFG 89
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
C Q+ P P+ W + ++ ++ ++ +L I D +ED+GKY N
Sbjct: 237 CMAQSYPTPSFRW-YKFIE-GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 294
Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTIS 253
+G + L AP+ + P Q+ D V C+ G P T+S
Sbjct: 295 SVGGESVETVLTVT---APLSAKIDPPT--------QTVDFGRPAVFTCQYTGNPIKTVS 343
Query: 254 W 254
W
Sbjct: 344 W 344
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 28 FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87
EC+ NP P+I+W R + D + + + G + D E A +Y
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83
Query: 88 AKNKMGEV 95
A+N+ G +
Sbjct: 84 ARNQFGSI 91
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
PVF + P + + IEC+ G P P I W
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIW 38
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 125 DDGKRLLFECRIQADPAPTVIW-SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
D+G + F CR DP P ++W S V + ++ DG +LE+ ++D
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-----TLEVRYAQVQD 452
Query: 184 AGKYKVTAKNELGESNATISLNFDS 208
G Y A N G + L+ S
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLHVRS 477
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRH-KFSIDKDGHS 169
AP + P +G+ +CR P +V W +G + RH + S+ DG
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+L V + D G Y N G SNA+ LN +
Sbjct: 408 ---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDI-VWFRGE------TQLSEDTRTVMKTTPI 62
F Q P +Q G + C+ + +P P+I WF G+ +QL + R
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHA 82
Query: 63 GTNKYLVA-LELDDVIETDAGLYKVKAKN 90
+++ + + +D ++E D G Y+ +A N
Sbjct: 83 TYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG-------VQVKEDKR-HKFSIDKD 166
F++ P +Q G + C P P + W G Q+ + R + I
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 167 GHSYFASLEIIDVTI-EDAGKYKVTAKNE 194
H + AS ID + ED G Y+ A N+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDI-VWFRGE------TQLSEDTRTVMKTTPI 62
F Q P +Q G + C+ + +P P+I WF G+ +QL + R
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHA 82
Query: 63 GTNKYLVA-LELDDVIETDAGLYKVKAKN 90
+++ + + +D ++E D G Y+ +A N
Sbjct: 83 TYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG-------VQVKEDKR-HKFSIDKD 166
F++ P +Q G + C P P + W G Q+ + R + I
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 167 GHSYFASLEIIDVTI-EDAGKYKVTAKNE 194
H + AS ID + ED G Y+ A N+
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRH-KFSIDKDGHS 169
P + P +G+ +CR P +V W +G + RH + S+ DG
Sbjct: 7 GPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 62
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+L V + D G Y N G SNA+ LN S
Sbjct: 63 ---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW--SHSGVQVKEDKRHKFSIDKDGHS 169
AP ++ P+ +G +CR +V W + + R + S+ DG
Sbjct: 312 APVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDG-- 368
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208
+L +VT++D G+Y N G + A+ +LN +
Sbjct: 369 ---TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGT 404
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 8 APSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
AP + QKP+ + +G + C++ P P++VW LS TV +
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS------- 360
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGE 94
L + V D G Y +A N+ G+
Sbjct: 361 ---GLVIKGVKNGDKGYYGCRATNEHGD 385
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 80 DAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKP-SIRQEDDGKRLLFECRIQ 137
D G+Y + N +G+ S+ L AP + +KP + G+ + C++
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVS------APKYEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 138 ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
PAP V+WSH+ K + ++ G L I V D G Y A NE G+
Sbjct: 335 GLPAPNVVWSHN---AKPLSGGRATVTDSG------LVIKGVKNGDKGYYGCRATNEHGD 385
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P L+ P+ + L +C+ DP P + W G + + +I + G
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP-GRDPRATIQEQG----- 62
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L+I ++ I D G Y A + GE++ + L+
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ F C +P ++ G ++ +R + K+G + L I + IEDAG
Sbjct: 17 GESKFFTCTAIGEPESIDWYNPQGEKIISTQR--VVVQKEGVR--SRLTIYNANIEDAGI 72
Query: 187 YKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y+ A + G++ AT+ L K F E V+ Q D + CR+
Sbjct: 73 YRCQATDAKGQTQEATVVLEIYQ----------KLTFRE-VVSPQEFKQGEDAEVVCRVS 121
Query: 246 GEPEPTISW 254
P P +SW
Sbjct: 122 SSPAPAVSW 130
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 23 GNRLIFECQLLCNPKPDIVWF--RGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
G F C + P+ I W+ +GE +S V K G L + IE D
Sbjct: 17 GESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKE---GVRSRLTIYNAN--IE-D 69
Query: 81 AGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD 139
AG+Y+ +A + G+ A++ L ++ TF + S ++ G+ CR+ +
Sbjct: 70 AGIYRCQATDAKGQTQEATVVLEIYQK------LTFREVVSPQEFKQGEDAEVVCRVSSS 123
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSI 163
PAP V W + +V ++F++
Sbjct: 124 PAPAVSWLYHNEEVTTISDNRFAM 147
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP ++ + G F R+ P P W +GV+++ R + +D
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---V 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
L I DVT ED+ V A N GE+++ L
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP ++ Q + +G+ F +++ P P+ W++ ++ R
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW----YWPEDN 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ L + DV D+ VKA N GE ++ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW--SHSGVQVKEDKRHKFSIDKDGHS 169
AP ++ P+ +G +CR + +V W + V + + ++ DG
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG-- 397
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L +VT++D G Y N +G + A+ +LN
Sbjct: 398 ---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
>pdb|3QG6|B Chain B, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG7|H Chain H, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 213
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 158 RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
+ +FSI +D L++ VTIED G Y T + + T++++ AP
Sbjct: 65 KSRFSITRDTSKNQFFLQLHSVTIEDTGTYFCTREGDYWGQGTTLTVSSAKTTAP----- 119
Query: 218 TKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEP-TISW 254
V+ PV D + + + C + G PEP T++W
Sbjct: 120 --SVYPLAPVC--GDTTGSSVTLGCLVKGYFPEPVTLTW 154
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 130 LLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+L +C++ T ++W ++ D++H F KDG +L I + + +DAG Y+
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDG---ICTLLITEFSKKDAGIYE 292
Query: 189 VTAKNELGESNATISL 204
V K++ G+ + + L
Sbjct: 293 VILKDDRGKDKSRLKL 308
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 130 LLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+L +C++ T ++W ++ D++H F KDG +L I + + +DAG Y+
Sbjct: 134 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDG---ICTLLITEFSKKDAGIYE 187
Query: 189 VTAKNELGESNATISL 204
V K++ G+ + + L
Sbjct: 188 VILKDDRGKDKSRLKL 203
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 130 LLFECRIQADPAPTVIWSHSGVQVK-EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+ C P PT++W GV V +D R K L+I + D G+Y
Sbjct: 26 FVLSCVATGSPVPTILWRKDGVLVSTQDSRIK-------QLENGVLQIRYAKLGDTGRYT 78
Query: 189 VTAKNELGESNATISLNFDSDDAPV 213
A GE+ + + PV
Sbjct: 79 CIASTPSGEATWSAYIEVQEFGVPV 103
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP T + ++EG + C+ + P P+ +W + E + E+ I +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGEVAASINL 101
L + ++ I D G Y+ A N +G + S L
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
P L++ IR+ G++L Q P P V+W+ G + + H + D D +F
Sbjct: 27 PRHLRQTYIRKV--GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFD-TVFF- 82
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ D+G+Y+++ + E + ATI +
Sbjct: 83 ---VRQAARSDSGEYELSVQIENMKDTATIRIR 112
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + EC +P P + W +V E I G A L+I ++ +ED G
Sbjct: 128 GQNVTLECFALGNPVPDIRWR----KVLEPMPSTAEISTSG----AVLKIFNIQLEDEGI 179
Query: 187 YKVTAKNELGE 197
Y+ A+N G+
Sbjct: 180 YECEAENIRGK 190
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP----IGTNKYLVALELDDVIE 78
G + EC L NP PDI W R V++ P I T+ L++ ++
Sbjct: 128 GQNVTLECFALGNPVPDIRW-----------RKVLEPMPSTAEISTSG--AVLKIFNIQL 174
Query: 79 TDAGLYKVKAKNKMGE 94
D G+Y+ +A+N G+
Sbjct: 175 EDEGIYECEAENIRGK 190
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 33/109 (30%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQ-----------------------------VKEDK 157
G +L + I DPAPTVIW + Q + +
Sbjct: 33 GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 92
Query: 158 RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
R + KD S F + ED G Y VT KN +GE +++
Sbjct: 93 RVRVETTKD-RSIFT---VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
F P+ ++ +G+ + C + + PT+IW H G V K +F + + + L
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-----L 58
Query: 175 EIIDVTIEDAGKYKVTAK 192
+I + D G Y+ +
Sbjct: 59 QIRGIKKTDEGTYRCEGR 76
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVW-FRG-ETQLSEDTRTVMKTTPIGTNKYL 68
F P ++ EG + C ++ + P I+W +G + L +D R + + +N Y
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----VLSNNY- 57
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQI 108
L++ + +TD G Y+ + G + A +NF Q+
Sbjct: 58 --LQIRGIKKTDEGTYRCE-----GRILARGEINFKDIQV 90
>pdb|2C9A|A Chain A, Crystal Structure Of The Mam-ig Module Of Receptor Protein
Tyrosine Phosphatase Mu
Length = 259
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P FL+ ++ + + G+ F+C I A +W G+ V++ + + +
Sbjct: 166 PHFLRIQNV-EVNAGQFATFQCSAIGRTVAGDRLWLQ-GIDVRDAPLKEIKVTSS-RRFI 222
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELG 196
AS +++ T DAGKY+ + E G
Sbjct: 223 ASFNVVNTTKRDAGKYRCXIRTEGG 247
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 26/179 (14%)
Query: 80 DAGLYKVKAKNKMGEVAASINLNFSREQID-GLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
D+G++ A N G S N+ + E +D G F + +DG+ + +A
Sbjct: 284 DSGVFMCYANNTFG----SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 339
Query: 139 DPAP-TVIWSHSGVQVKEDKRHKF--SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
P P W + + DK + S ++ Y + L + + + G Y N
Sbjct: 340 FPKPEHQQWIYMN-RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNS- 397
Query: 196 GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ NA I+ N + TKP + D L + +++C G PEPTI W
Sbjct: 398 -DVNAAIAFNVYVN--------TKPEIL-------TYDRLVNGMLQCVAAGFPEPTIDW 440
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 126 DGKRLLFECRIQADPAPTVI--WSHSGVQVK-EDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+G+ C I+ D + +V W Q K ++K + + + A+L I +
Sbjct: 225 EGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN 283
Query: 183 DAGKYKVTAKNELGESNATISL 204
D+G + A N G +N T +L
Sbjct: 284 DSGVFMCYANNTFGSANVTTTL 305
>pdb|2EDN|A Chain A, Solution Structure Of The First Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 37 KPDIVWFRG---ETQLSEDTRTVMKTTP-IGTNKYLVALELDDVIETDAGLYKVKAKNK 91
KP I WF+G E R K + +N Y V L + V+ D G Y+++ K K
Sbjct: 44 KPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAK 102
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 125 DDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
++G + + C+I+ D + V W Q++ ++++ + + DG A L + D+T D
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-DG---VAILYVKDITKLD 69
Query: 184 AGKYKVTAKNELGESNATISL 204
G Y+ N+ GE ++ L
Sbjct: 70 DGTYRCKVVNDYGEDSSYAEL 90
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 26/179 (14%)
Query: 80 DAGLYKVKAKNKMGEVAASINLNFSREQID-GLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
D+G++ A N G S N+ + E +D G F + +DG+ + +A
Sbjct: 259 DSGVFMCYANNTFG----SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 314
Query: 139 DPAP-TVIWSHSGVQVKEDKRHKF--SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
P P W + + DK + S ++ Y + L + + + G Y N
Sbjct: 315 FPKPEHQQWIYMN-RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN-- 371
Query: 196 GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ NA I+ N + TKP + D L + +++C G PEPTI W
Sbjct: 372 SDVNAAIAFNVYVN--------TKPEIL-------TYDRLVNGMLQCVAAGFPEPTIDW 415
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 126 DGKRLLFECRIQADPAPTVI--WSHSGVQVK-EDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+G+ C I+ D + +V W Q K ++K + + + A+L I +
Sbjct: 200 EGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN 258
Query: 183 DAGKYKVTAKNELGESNATISL 204
D+G + A N G +N T +L
Sbjct: 259 DSGVFMCYANNTFGSANVTTTL 280
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV 56
G+ L+ +C + +P P WF+ E L+ +T+ +
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL 51
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P FL+ ++ + + G+ F+C I A +W G+ V++ + + +
Sbjct: 166 PHFLRIQNV-EVNAGQFATFQCSAIGRTVAGDRLWLQ-GIDVRDAPLKEIKVTSS-RRFI 222
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELG 196
AS +++ T DAGKY+ + E G
Sbjct: 223 ASFNVVNTTKRDAGKYRCMIRTEGG 247
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 73 LDDVIETDAGLYKVKAKN-KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
L + ++ D G Y+ + G A + L + L P P++ +E G L
Sbjct: 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP----GPAL-EEGQGLTLA 137
Query: 132 FECRIQADPAPTVIW 146
C + PAP+V W
Sbjct: 138 ASCTAEGSPAPSVTW 152
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 119 PSIRQEDDGKRLLFEC--RIQADPAPTVIWSHSGVQVKEDK------RHKFSIDKDGHSY 170
P I ++ G+ L C R A + W + + +++ R+ ++D+ +S
Sbjct: 7 PRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNS- 65
Query: 171 FASLEIIDVTIEDAGKYKVTA 191
ASL I D+ +ED+G YK A
Sbjct: 66 -ASLTIRDLRVEDSGTYKCKA 85
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 117 KKPSIRQEDDGKRLLFECRI--------QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
+ P ++ G+ L C + + D T + S + ++ R+ +++K
Sbjct: 5 QTPRSVTKETGESLTINCALKNAADDLERTDWYRTTLGSTNEQKISIGGRYVETVNKGSK 64
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGE-GTKPVFT 223
S+ SL I D+ +ED+G YK A SN + P+PGE G V T
Sbjct: 65 SF--SLRIRDLRVEDSGTYKCGAYFSDAMSNYSY---------PIPGEKGAGTVLT 109
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV 56
G+ L+ +C + +P P WF+ E L+ +T+ +
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL 166
>pdb|2Z5W|A Chain A, Tbcla, A Recombinant Spore Surface Protein From Bacillus
Anthracis
pdb|3AB0|A Chain A, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
pdb|3AB0|D Chain D, Crystal Structure Of Complex Of The Bacillus Anthracis
Major Spore Surface Protein Bcla With Scfv Antibody
Fragment
Length = 136
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
I + G YK+T ++ L + PVPG G+ + P+ Q+
Sbjct: 49 ISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQA 99
>pdb|3TWI|A Chain A, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|B Chain B, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|C Chain C, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 160
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV---TIEDAGKYKVTAKNELG 196
PA ++ G+ + + G + ++ +D I + G YK+T
Sbjct: 25 PAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTA 84
Query: 197 ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
++ L + PVPG G+ + P+ Q+
Sbjct: 85 TASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQA 119
>pdb|2R6Q|A Chain A, Crystal Structure Of Bcla-Island Construct
Length = 138
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
I + G YK+T ++ L + PVPG G+ + P+ Q+
Sbjct: 52 ISETGFYKITVIANTATASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQA 102
>pdb|1WCK|A Chain A, Crystal Structure Of The C-Terminal Domain Of Bcla, The
Major Antigen Of The Exosporium Of The Bacillus
Anthracis Spore
Length = 220
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV---TIEDAGKYKVTAKNELG 196
PA ++ G+ + + G + ++ +D I + G YK+T
Sbjct: 84 PAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTA 143
Query: 197 ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
++ L + PVPG G+ + P+ Q+
Sbjct: 144 TASVLGGLTIQVNGVPVPGTGSSLISLGAPIVIQA 178
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 117 KKPSIRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDK------RHKFSIDKDGH 168
+ P ++ G+ L +C ++ + W + + +K R+ ++DK
Sbjct: 5 QTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSK 64
Query: 169 SYFASLEIIDVTIEDAGKYKVTA 191
S+ SL I D+ +ED+G YK A
Sbjct: 65 SF--SLRISDLRVEDSGTYKCQA 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,952,617
Number of Sequences: 62578
Number of extensions: 340309
Number of successful extensions: 1360
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 337
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)