Query psy7036
Match_columns 254
No_of_seqs 209 out of 1688
Neff 12.0
Searched_HMMs 46136
Date Sat Aug 17 01:06:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.6E-33 3.4E-38 228.4 22.9 223 3-254 326-552 (1051)
2 KOG3513|consensus 100.0 4.6E-32 9.9E-37 220.0 22.0 220 5-254 237-460 (1051)
3 KOG4194|consensus 100.0 9.3E-30 2E-34 194.2 16.7 228 6-254 501-741 (873)
4 KOG4221|consensus 100.0 7.5E-29 1.6E-33 201.5 19.8 226 4-254 136-362 (1381)
5 PHA02785 IL-beta-binding prote 99.9 1E-25 2.3E-30 169.2 21.2 206 17-254 35-257 (326)
6 KOG4222|consensus 99.9 7.6E-27 1.7E-31 188.9 13.9 224 4-254 27-259 (1281)
7 KOG4222|consensus 99.9 5.7E-26 1.2E-30 183.9 13.7 216 9-254 132-349 (1281)
8 KOG4194|consensus 99.9 2.4E-25 5.3E-30 170.3 15.3 189 3-208 607-797 (873)
9 PHA02826 IL-1 receptor-like pr 99.9 9.5E-24 2.1E-28 149.4 18.6 163 14-196 28-212 (227)
10 KOG4221|consensus 99.9 7.6E-24 1.7E-28 172.8 16.4 210 11-245 240-449 (1381)
11 PHA02785 IL-beta-binding prote 99.9 2.7E-21 5.8E-26 145.5 20.8 175 9-197 122-317 (326)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 5.5E-20 1.2E-24 113.8 12.7 93 9-106 1-93 (98)
13 cd05851 Ig3_Contactin-1 Third 99.8 3.4E-19 7.4E-24 108.2 9.9 87 8-103 1-87 (88)
14 cd05747 Ig5_Titin_like M5, fif 99.8 2.3E-18 5.1E-23 105.8 11.7 90 7-101 2-91 (92)
15 PF07679 I-set: Immunoglobulin 99.8 6.2E-18 1.3E-22 103.9 11.4 90 9-103 1-90 (90)
16 cd05762 Ig8_MLCK Eighth immuno 99.8 1.7E-17 3.6E-22 102.7 12.6 91 115-209 3-93 (98)
17 cd04975 Ig4_SCFR_like Fourth i 99.8 1.4E-17 3E-22 103.1 11.9 89 16-104 11-100 (101)
18 cd05728 Ig4_Contactin-2-like F 99.8 9.2E-18 2E-22 101.4 9.9 84 11-103 2-85 (85)
19 cd05737 Ig_Myomesin_like_C C-t 99.8 2.2E-17 4.8E-22 101.4 11.2 86 14-103 7-92 (92)
20 cd04968 Ig3_Contactin_like Thi 99.7 3.9E-17 8.4E-22 99.5 11.0 87 8-103 1-87 (88)
21 cd05869 Ig5_NCAM-1 Fifth immun 99.7 4.8E-17 1E-21 100.9 11.3 93 8-103 2-97 (97)
22 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 5.7E-17 1.2E-21 97.8 11.2 82 17-103 4-86 (86)
23 cd04972 Ig_TrkABC_d4 Fourth do 99.7 9E-17 1.9E-21 98.3 11.5 87 12-103 4-90 (90)
24 cd05735 Ig8_DSCAM Eight immuno 99.7 1.8E-16 3.9E-21 96.2 12.1 82 23-105 1-83 (88)
25 cd05745 Ig3_Peroxidasin Third 99.7 4E-17 8.7E-22 95.9 8.7 74 22-103 1-74 (74)
26 cd05730 Ig3_NCAM-1_like Third 99.7 1.7E-16 3.7E-21 98.2 11.9 91 8-104 1-93 (95)
27 cd05865 Ig1_NCAM-1 First immun 99.7 1.8E-16 3.9E-21 97.4 11.7 89 11-103 3-95 (96)
28 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.2E-16 2.7E-21 99.2 11.2 92 8-103 2-96 (96)
29 cd05773 Ig8_hNephrin_like Eigh 99.7 2.5E-16 5.3E-21 99.5 12.5 99 5-104 1-105 (109)
30 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.4E-16 3E-21 99.0 11.1 92 8-103 2-98 (98)
31 cd05852 Ig5_Contactin-1 Fifth 99.7 6.6E-17 1.4E-21 94.2 8.8 73 23-103 1-73 (73)
32 cd04975 Ig4_SCFR_like Fourth i 99.7 3.2E-16 6.9E-21 97.0 12.3 88 120-207 11-100 (101)
33 cd05892 Ig_Myotilin_C C-termin 99.7 1.3E-16 2.8E-21 93.3 9.9 74 26-103 1-75 (75)
34 cd05867 Ig4_L1-CAM_like Fourth 99.7 2E-16 4.4E-21 93.5 10.8 74 23-103 1-75 (76)
35 cd05868 Ig4_NrCAM Fourth immun 99.7 1.8E-16 3.9E-21 93.4 10.2 75 23-103 1-75 (76)
36 cd05851 Ig3_Contactin-1 Third 99.7 2.5E-16 5.3E-21 95.6 11.1 86 113-206 2-87 (88)
37 cd05859 Ig4_PDGFR-alpha Fourth 99.7 3E-16 6.4E-21 97.3 11.3 88 17-104 12-100 (101)
38 cd05891 Ig_M-protein_C C-termi 99.7 2.8E-16 6E-21 96.2 11.0 86 14-103 7-92 (92)
39 cd05737 Ig_Myomesin_like_C C-t 99.7 4.5E-16 9.8E-21 95.5 11.7 84 120-206 9-92 (92)
40 cd07693 Ig1_Robo First immunog 99.7 5.8E-16 1.3E-20 97.1 12.2 95 8-103 1-99 (100)
41 cd05735 Ig8_DSCAM Eight immuno 99.7 1.1E-15 2.3E-20 92.8 12.8 82 127-208 1-83 (88)
42 cd05855 Ig_TrkB_d5 Fifth domai 99.7 3.8E-16 8.3E-21 91.5 10.2 76 27-102 2-77 (79)
43 cd05863 Ig2_VEGFR-3 Second imm 99.7 2E-16 4.3E-21 89.9 8.6 66 26-104 1-66 (67)
44 cd05893 Ig_Palladin_C C-termin 99.7 2.9E-16 6.2E-21 91.9 9.2 75 26-103 1-75 (75)
45 cd05866 Ig1_NCAM-2 First immun 99.7 8.5E-16 1.8E-20 93.4 11.4 87 11-103 3-91 (92)
46 cd04973 Ig1_FGFR First immunog 99.7 2.7E-16 5.9E-21 93.5 9.0 79 15-103 1-79 (79)
47 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.8E-15 3.9E-20 91.3 12.4 82 121-206 4-86 (86)
48 cd05747 Ig5_Titin_like M5, fif 99.7 1.4E-15 3E-20 93.4 12.1 90 111-204 2-91 (92)
49 cd05848 Ig1_Contactin-5 First 99.7 1.6E-15 3.5E-20 93.2 11.9 81 9-96 2-86 (94)
50 cd05892 Ig_Myotilin_C C-termin 99.7 8.8E-16 1.9E-20 89.7 10.2 74 130-206 1-75 (75)
51 cd05748 Ig_Titin_like Immunogl 99.7 7.8E-16 1.7E-20 90.6 9.9 74 25-103 1-74 (74)
52 cd05850 Ig1_Contactin-2 First 99.7 2.6E-15 5.7E-20 92.3 12.6 82 9-97 2-87 (94)
53 cd05857 Ig2_FGFR Second immuno 99.7 1.3E-15 2.8E-20 92.3 10.9 81 18-103 4-85 (85)
54 cd05723 Ig4_Neogenin Fourth im 99.7 9.6E-16 2.1E-20 89.2 9.7 71 25-103 1-71 (71)
55 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.9E-15 4E-20 89.3 11.1 74 127-206 1-75 (76)
56 cd05745 Ig3_Peroxidasin Third 99.7 7.6E-16 1.6E-20 90.5 9.1 74 126-206 1-74 (74)
57 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.2E-15 2.5E-20 90.5 10.0 75 23-103 1-75 (76)
58 cd05868 Ig4_NrCAM Fourth immun 99.7 1.5E-15 3.3E-20 89.5 10.4 75 127-206 1-75 (76)
59 cd05771 IgC_Tapasin_R Tapasin- 99.7 3.3E-15 7.1E-20 99.1 13.1 122 70-197 2-133 (139)
60 cd05722 Ig1_Neogenin First imm 99.7 2E-15 4.3E-20 93.4 11.1 86 11-102 2-94 (95)
61 cd04969 Ig5_Contactin_like Fif 99.7 8.4E-16 1.8E-20 90.1 9.0 73 23-103 1-73 (73)
62 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.7E-15 3.6E-20 94.0 10.8 87 121-207 12-100 (101)
63 cd05852 Ig5_Contactin-1 Fifth 99.7 1.6E-15 3.5E-20 88.3 9.9 73 127-206 1-73 (73)
64 cd05744 Ig_Myotilin_C_like Imm 99.7 1.7E-15 3.8E-20 88.9 10.1 74 26-103 1-75 (75)
65 cd05740 Ig_CEACAM_D4 Fourth im 99.7 3E-15 6.4E-20 91.2 11.1 86 9-103 2-90 (91)
66 cd05730 Ig3_NCAM-1_like Third 99.7 5.2E-15 1.1E-19 91.6 12.1 82 121-207 12-93 (95)
67 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 3.9E-15 8.6E-20 88.4 10.6 76 27-102 2-79 (81)
68 PF07679 I-set: Immunoglobulin 99.7 3.3E-15 7.2E-20 91.7 10.5 88 115-206 3-90 (90)
69 cd04976 Ig2_VEGFR Second immun 99.6 1.2E-15 2.6E-20 88.6 8.0 70 26-104 1-70 (71)
70 cd04968 Ig3_Contactin_like Thi 99.6 5.3E-15 1.1E-19 90.1 11.1 83 116-206 5-87 (88)
71 cd05893 Ig_Palladin_C C-termin 99.6 3.7E-15 8.1E-20 87.2 10.0 75 130-206 1-75 (75)
72 cd05891 Ig_M-protein_C C-termi 99.6 8.9E-15 1.9E-19 89.6 11.8 84 120-206 9-92 (92)
73 cd05743 Ig_Perlecan_D2_like Im 99.6 2.5E-15 5.4E-20 89.2 9.1 75 23-102 1-75 (78)
74 cd04972 Ig_TrkABC_d4 Fourth do 99.6 9.2E-15 2E-19 89.4 11.7 83 120-206 8-90 (90)
75 cd05758 Ig5_KIRREL3-like Fifth 99.6 1.1E-14 2.4E-19 90.5 12.2 92 8-101 2-97 (98)
76 cd05863 Ig2_VEGFR-3 Second imm 99.6 3.8E-15 8.1E-20 84.6 9.0 66 130-207 1-66 (67)
77 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 3.7E-15 8.1E-20 85.8 9.0 68 23-101 1-68 (69)
78 cd04978 Ig4_L1-NrCAM_like Four 99.6 7.8E-15 1.7E-19 86.9 10.6 75 127-206 1-75 (76)
79 cd04977 Ig1_NCAM-1_like First 99.6 9.2E-15 2E-19 89.5 11.2 87 11-102 3-91 (92)
80 cd05748 Ig_Titin_like Immunogl 99.6 7.7E-15 1.7E-19 86.3 10.4 73 130-206 2-74 (74)
81 cd05723 Ig4_Neogenin Fourth im 99.6 8.3E-15 1.8E-19 85.2 10.3 71 129-206 1-71 (71)
82 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.9E-15 4E-20 87.0 7.4 68 26-103 1-68 (70)
83 cd05728 Ig4_Contactin-2-like F 99.6 8E-15 1.7E-19 88.5 10.5 81 118-206 5-85 (85)
84 cd05849 Ig1_Contactin-1 First 99.6 1E-14 2.2E-19 89.2 11.0 82 8-97 1-86 (93)
85 cd05756 Ig1_IL1R_like First im 99.6 2.3E-15 4.9E-20 92.2 8.1 81 16-103 7-94 (94)
86 cd05865 Ig1_NCAM-1 First immun 99.6 1.3E-14 2.7E-19 89.2 11.4 84 120-206 8-95 (96)
87 cd05854 Ig6_Contactin-2 Sixth 99.6 1.3E-14 2.9E-19 87.2 11.2 79 24-104 1-82 (85)
88 cd05855 Ig_TrkB_d5 Fifth domai 99.6 8.9E-15 1.9E-19 85.7 10.1 74 132-205 3-77 (79)
89 cd05760 Ig2_PTK7 Second immuno 99.6 6E-15 1.3E-19 87.2 9.6 72 26-103 1-74 (77)
90 cd05726 Ig4_Robo Fhird immunog 99.6 6.9E-15 1.5E-19 89.9 10.1 77 23-105 1-83 (90)
91 cd05752 Ig1_FcgammaR_like Frst 99.6 4.5E-15 9.8E-20 87.4 8.8 67 9-91 1-68 (78)
92 cd05749 Ig2_Tyro3_like Second 99.6 5.6E-15 1.2E-19 87.6 9.2 73 11-96 1-74 (81)
93 cd05744 Ig_Myotilin_C_like Imm 99.6 1.5E-14 3.2E-19 85.0 10.6 74 130-206 1-75 (75)
94 cd07693 Ig1_Robo First immunog 99.6 1.9E-14 4.1E-19 90.2 11.9 94 113-206 2-99 (100)
95 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.3E-14 2.8E-19 86.2 10.4 76 131-206 2-80 (81)
96 cd05724 Ig2_Robo Second immuno 99.6 1.2E-14 2.5E-19 88.4 10.5 81 14-101 2-84 (86)
97 cd05869 Ig5_NCAM-1 Fifth immun 99.6 2.4E-14 5.2E-19 88.8 11.7 85 120-206 10-97 (97)
98 cd04969 Ig5_Contactin_like Fif 99.6 1.7E-14 3.7E-19 84.5 10.4 73 127-206 1-73 (73)
99 cd05746 Ig4_Peroxidasin Fourth 99.6 3.3E-15 7.2E-20 86.4 7.2 68 26-101 1-68 (69)
100 cd05857 Ig2_FGFR Second immuno 99.6 2E-14 4.4E-19 87.1 10.8 81 122-206 4-85 (85)
101 cd05773 Ig8_hNephrin_like Eigh 99.6 5.5E-14 1.2E-18 88.7 13.2 83 126-208 22-106 (109)
102 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.3E-14 2.7E-19 85.2 9.1 72 26-103 1-73 (74)
103 cd05858 Ig3_FGFR-2 Third immun 99.6 1.6E-14 3.4E-19 88.3 9.7 81 23-103 1-89 (90)
104 cd05856 Ig2_FGFRL1-like Second 99.6 1.1E-14 2.4E-19 87.7 8.8 78 19-103 5-82 (82)
105 cd05876 Ig3_L1-CAM Third immun 99.6 6.9E-15 1.5E-19 85.6 7.5 70 26-103 1-70 (71)
106 cd05853 Ig6_Contactin-4 Sixth 99.6 2.4E-14 5.3E-19 85.2 9.9 79 24-104 1-82 (85)
107 cd05763 Ig_1 Subgroup of the i 99.6 1.5E-14 3.2E-19 85.3 8.8 73 26-103 1-74 (75)
108 cd05736 Ig2_Follistatin_like S 99.6 2.7E-14 5.8E-19 84.5 9.9 74 26-104 1-74 (76)
109 cd05760 Ig2_PTK7 Second immuno 99.6 2.7E-14 5.9E-19 84.4 9.9 72 130-206 1-74 (77)
110 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.4E-14 2.9E-19 83.4 8.2 68 130-206 1-68 (70)
111 cd04974 Ig3_FGFR Third immunog 99.6 2.2E-14 4.7E-19 87.6 9.6 81 23-103 1-89 (90)
112 cd05725 Ig3_Robo Third immunog 99.6 8.6E-15 1.9E-19 84.8 7.4 69 26-103 1-69 (69)
113 cd04970 Ig6_Contactin_like Six 99.6 3.1E-14 6.7E-19 86.1 10.0 79 24-104 1-82 (85)
114 cd04976 Ig2_VEGFR Second immun 99.6 3.1E-14 6.7E-19 82.6 9.6 70 130-207 1-70 (71)
115 cd05848 Ig1_Contactin-5 First 99.6 7E-14 1.5E-18 85.9 11.5 68 126-199 18-86 (94)
116 cd04967 Ig1_Contactin First Ig 99.6 6.6E-14 1.4E-18 85.7 11.4 81 9-96 2-86 (91)
117 cd05764 Ig_2 Subgroup of the i 99.6 3E-14 6.4E-19 83.8 9.4 73 23-103 1-74 (74)
118 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 3.9E-14 8.5E-19 83.1 9.7 72 130-206 1-73 (74)
119 cd05732 Ig5_NCAM-1_like Fifth 99.6 7E-14 1.5E-18 86.7 11.3 85 120-206 9-96 (96)
120 cd05850 Ig1_Contactin-2 First 99.6 1.2E-13 2.7E-18 84.8 12.2 72 127-204 19-92 (94)
121 cd05742 Ig1_VEGFR_like First i 99.6 2.9E-14 6.3E-19 86.0 9.0 81 23-103 1-83 (84)
122 cd05876 Ig3_L1-CAM Third immun 99.6 4.2E-14 9E-19 82.3 9.3 70 130-206 1-70 (71)
123 cd05854 Ig6_Contactin-2 Sixth 99.6 9.1E-14 2E-18 83.6 10.9 79 128-208 1-83 (85)
124 cd05743 Ig_Perlecan_D2_like Im 99.6 5.3E-14 1.1E-18 83.5 9.7 74 127-204 1-74 (78)
125 cd05870 Ig5_NCAM-2 Fifth immun 99.6 8.6E-14 1.9E-18 86.4 11.1 86 119-206 8-98 (98)
126 cd05746 Ig4_Peroxidasin Fourth 99.6 2.6E-14 5.6E-19 82.7 7.9 68 130-204 1-68 (69)
127 cd05758 Ig5_KIRREL3-like Fifth 99.6 2.3E-13 5.1E-18 84.5 12.5 86 119-204 8-97 (98)
128 cd04973 Ig1_FGFR First immunog 99.6 8.1E-14 1.8E-18 82.8 9.8 77 121-206 3-79 (79)
129 cd05736 Ig2_Follistatin_like S 99.6 1.3E-13 2.8E-18 81.5 10.5 73 131-207 2-74 (76)
130 cd05722 Ig1_Neogenin First imm 99.6 1.2E-13 2.6E-18 85.4 10.7 83 118-205 5-94 (95)
131 cd05853 Ig6_Contactin-4 Sixth 99.6 8.1E-14 1.8E-18 82.9 9.3 80 128-208 1-83 (85)
132 cd05856 Ig2_FGFRL1-like Second 99.5 6.6E-14 1.4E-18 84.3 9.0 78 123-206 5-82 (82)
133 cd05731 Ig3_L1-CAM_like Third 99.5 3.8E-14 8.2E-19 82.8 7.6 70 26-103 1-70 (71)
134 cd05726 Ig4_Robo Fhird immunog 99.5 1.1E-13 2.5E-18 84.5 9.9 77 127-208 1-83 (90)
135 cd05866 Ig1_NCAM-2 First immun 99.5 1.9E-13 4.1E-18 83.1 10.7 82 120-206 8-91 (92)
136 cd07702 Ig2_VEGFR-1 Second imm 99.5 4.4E-14 9.5E-19 81.4 7.4 68 26-101 1-68 (72)
137 KOG3515|consensus 99.5 1.3E-13 2.8E-18 110.8 12.5 222 9-254 8-241 (741)
138 cd04970 Ig6_Contactin_like Six 99.5 1.7E-13 3.6E-18 82.8 10.3 80 128-208 1-83 (85)
139 cd05740 Ig_CEACAM_D4 Fourth im 99.5 2.3E-13 5E-18 82.9 10.9 78 121-206 12-90 (91)
140 cd05763 Ig_1 Subgroup of the i 99.5 1E-13 2.2E-18 81.7 9.0 73 130-206 1-74 (75)
141 cd05764 Ig_2 Subgroup of the i 99.5 1.4E-13 3.1E-18 80.9 9.6 73 127-206 1-74 (74)
142 cd05765 Ig_3 Subgroup of the i 99.5 1.3E-13 2.9E-18 82.7 9.3 75 23-103 1-81 (81)
143 cd05725 Ig3_Robo Third immunog 99.5 1.2E-13 2.5E-18 80.0 8.5 69 130-206 1-69 (69)
144 cd05724 Ig2_Robo Second immuno 99.5 3E-13 6.6E-18 82.1 10.7 79 120-204 4-84 (86)
145 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 2.2E-13 4.8E-18 78.4 9.4 68 127-204 1-68 (69)
146 cd05858 Ig3_FGFR-2 Third immun 99.5 2.9E-13 6.2E-18 82.7 10.3 80 127-206 1-89 (90)
147 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 5.1E-13 1.1E-17 80.2 11.1 81 23-104 1-83 (84)
148 cd05849 Ig1_Contactin-1 First 99.5 3.6E-13 7.8E-18 82.4 10.5 71 127-204 19-91 (93)
149 cd05750 Ig_Pro_neuregulin Immu 99.5 1.6E-13 3.5E-18 81.0 8.7 72 26-100 1-74 (75)
150 cd05731 Ig3_L1-CAM_like Third 99.5 1.5E-13 3.2E-18 80.3 8.3 70 130-206 1-70 (71)
151 cd05882 Ig1_Necl-1 First (N-te 99.5 3.7E-13 7.9E-18 82.4 10.3 82 16-102 5-94 (95)
152 cd04977 Ig1_NCAM-1_like First 99.5 6E-13 1.3E-17 81.4 10.8 82 120-205 8-91 (92)
153 cd04974 Ig3_FGFR Third immunog 99.5 2.7E-13 5.9E-18 82.7 9.2 80 127-206 1-89 (90)
154 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.8E-13 3.9E-18 80.9 8.1 66 26-96 1-70 (77)
155 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.2E-12 2.6E-17 80.0 11.8 92 8-101 2-97 (98)
156 cd07702 Ig2_VEGFR-1 Second imm 99.5 4.6E-13 1E-17 77.2 9.2 70 130-206 1-70 (72)
157 cd05873 Ig_Sema4D_like Immunog 99.5 3.2E-13 6.9E-18 80.7 8.8 70 14-92 2-71 (87)
158 PHA02826 IL-1 receptor-like pr 99.5 5.9E-13 1.3E-17 94.7 11.7 116 121-254 31-168 (227)
159 cd05874 Ig6_NrCAM Sixth immuno 99.5 3.4E-13 7.3E-18 79.5 8.6 67 26-97 1-71 (77)
160 cd04979 Ig_Semaphorin_C Immuno 99.5 4E-13 8.7E-18 81.9 9.1 83 14-104 2-87 (89)
161 cd05729 Ig2_FGFR_like Second i 99.5 1.1E-12 2.3E-17 79.6 10.7 82 18-103 4-85 (85)
162 cd07701 Ig1_Necl-3 First (N-te 99.5 6.2E-13 1.3E-17 81.7 9.6 83 15-102 4-94 (95)
163 cd05754 Ig3_Perlecan_like Thir 99.5 3.3E-13 7.2E-18 81.6 8.3 79 12-101 5-84 (85)
164 cd05753 Ig2_FcgammaR_like Seco 99.5 3.8E-13 8.3E-18 80.5 7.8 66 16-94 7-73 (83)
165 cd05749 Ig2_Tyro3_like Second 99.5 1.1E-12 2.4E-17 77.8 9.6 70 118-199 4-74 (81)
166 cd05756 Ig1_IL1R_like First im 99.5 4.9E-13 1.1E-17 81.9 8.3 80 121-206 8-94 (94)
167 cd05765 Ig_3 Subgroup of the i 99.5 9.5E-13 2.1E-17 78.9 9.4 75 127-206 1-81 (81)
168 cd05742 Ig1_VEGFR_like First i 99.5 1.1E-12 2.4E-17 79.0 9.6 80 127-206 1-83 (84)
169 cd05875 Ig6_hNeurofascin_like 99.5 8.7E-13 1.9E-17 77.8 8.9 67 26-97 1-71 (77)
170 cd05750 Ig_Pro_neuregulin Immu 99.5 8.3E-13 1.8E-17 77.9 8.3 72 130-203 1-74 (75)
171 cd05734 Ig7_DSCAM Seventh immu 99.4 8.1E-13 1.8E-17 78.6 8.2 71 26-102 1-78 (79)
172 cd05733 Ig6_L1-CAM_like Sixth 99.4 9.8E-13 2.1E-17 77.7 8.5 65 130-199 1-70 (77)
173 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 4.6E-12 9.9E-17 76.1 11.4 80 127-206 1-82 (84)
174 cd04967 Ig1_Contactin First Ig 99.4 3.2E-12 6.8E-17 78.3 10.8 68 126-199 18-86 (91)
175 cd05875 Ig6_hNeurofascin_like 99.4 2.2E-12 4.8E-17 76.0 9.5 66 130-200 1-71 (77)
176 cd05874 Ig6_NrCAM Sixth immuno 99.4 2E-12 4.4E-17 76.2 9.3 66 130-200 1-71 (77)
177 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1.3E-12 2.9E-17 77.1 8.4 72 26-100 1-75 (76)
178 cd05752 Ig1_FcgammaR_like Frst 99.4 1.2E-12 2.6E-17 77.1 7.7 63 117-194 5-68 (78)
179 cd05734 Ig7_DSCAM Seventh immu 99.4 2E-12 4.4E-17 76.9 8.8 71 130-205 1-78 (79)
180 cd05860 Ig4_SCFR Fourth immuno 99.4 1.4E-11 3E-16 74.7 11.8 88 120-207 11-100 (101)
181 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.1E-11 2.3E-16 75.8 11.5 88 117-204 6-97 (98)
182 cd05860 Ig4_SCFR Fourth immuno 99.4 1.2E-11 2.5E-16 75.1 11.3 89 16-104 11-100 (101)
183 cd05757 Ig2_IL1R_like Second i 99.4 3E-12 6.6E-17 77.8 8.4 73 18-99 5-82 (92)
184 cd05895 Ig_Pro_neuregulin-1 Im 99.4 2.5E-12 5.4E-17 76.0 7.9 72 130-203 1-75 (76)
185 PF13895 Ig_2: Immunoglobulin 99.4 5.5E-12 1.2E-16 75.4 9.4 79 8-103 1-80 (80)
186 cd05729 Ig2_FGFR_like Second i 99.4 1.4E-11 3.1E-16 74.5 10.7 81 123-206 5-85 (85)
187 cd05896 Ig1_IL1RAPL-1_like Fir 99.4 4E-12 8.6E-17 77.3 7.8 81 16-103 8-104 (104)
188 PHA03376 BARF1; Provisional 99.4 8.5E-11 1.8E-15 78.1 14.0 126 17-151 20-163 (221)
189 cd07690 Ig1_CD4 First immunogl 99.4 5E-12 1.1E-16 76.9 7.6 75 18-94 2-90 (94)
190 cd05882 Ig1_Necl-1 First (N-te 99.3 2.3E-11 4.9E-16 74.5 10.1 73 120-193 5-83 (95)
191 cd05862 Ig1_VEGFR First immuno 99.3 1.2E-11 2.7E-16 74.5 8.7 80 23-104 1-85 (86)
192 cd05727 Ig2_Contactin-2-like S 99.3 6E-12 1.3E-16 76.3 6.8 73 15-94 10-85 (96)
193 cd05717 Ig1_Necl-1-3_like Firs 99.3 2.7E-11 5.9E-16 74.8 9.9 83 16-103 5-95 (95)
194 smart00409 IG Immunoglobulin. 99.3 9.2E-11 2E-15 70.9 12.1 83 16-103 2-85 (86)
195 smart00410 IG_like Immunoglobu 99.3 9.2E-11 2E-15 70.9 12.1 83 16-103 2-85 (86)
196 cd05871 Ig_Semaphorin_classIII 99.3 2.3E-11 5E-16 74.0 9.2 79 18-104 6-89 (91)
197 cd04979 Ig_Semaphorin_C Immuno 99.3 3.6E-11 7.9E-16 73.3 9.7 81 120-207 4-87 (89)
198 cd05754 Ig3_Perlecan_like Thir 99.3 3.2E-11 6.9E-16 72.9 9.2 76 119-204 8-84 (85)
199 smart00408 IGc2 Immunoglobulin 99.3 2.5E-11 5.5E-16 68.8 8.3 63 22-93 1-63 (63)
200 cd07701 Ig1_Necl-3 First (N-te 99.3 9E-11 1.9E-15 72.1 10.5 82 120-205 5-94 (95)
201 cd05873 Ig_Sema4D_like Immunog 99.3 9.2E-11 2E-15 70.1 9.7 69 119-195 3-71 (87)
202 cd05757 Ig2_IL1R_like Second i 99.3 4.6E-11 1E-15 72.7 8.6 76 122-205 5-85 (92)
203 cd05897 Ig2_IL1R2_like Second 99.3 5.8E-11 1.3E-15 72.1 8.3 71 18-94 5-80 (95)
204 cd05753 Ig2_FcgammaR_like Seco 99.2 7.1E-11 1.5E-15 70.6 7.5 64 122-197 9-73 (83)
205 cd05872 Ig_Sema4B_like Immunog 99.2 8.8E-11 1.9E-15 69.7 7.5 77 16-103 4-82 (85)
206 cd05759 Ig2_KIRREL3-like Secon 99.2 2E-10 4.4E-15 68.8 9.3 76 25-101 1-80 (82)
207 cd05885 Ig2_Necl-4 Second immu 99.2 1.5E-10 3.3E-15 67.7 8.3 66 26-94 2-68 (80)
208 cd05845 Ig2_L1-CAM_like Second 99.2 8E-11 1.7E-15 71.3 7.2 78 9-93 3-83 (95)
209 cd05727 Ig2_Contactin-2-like S 99.2 8.5E-11 1.8E-15 71.3 7.1 73 121-198 12-86 (96)
210 smart00408 IGc2 Immunoglobulin 99.2 2.3E-10 5.1E-15 64.8 8.7 63 126-196 1-63 (63)
211 cd05881 Ig1_Necl-2 First (N-te 99.2 4.8E-10 1E-14 68.2 10.3 73 16-92 5-85 (95)
212 PF00047 ig: Immunoglobulin do 99.2 2.4E-11 5.2E-16 69.2 4.2 63 23-88 1-64 (64)
213 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.1E-10 2.3E-15 77.5 7.7 72 172-254 1-74 (139)
214 cd05714 Ig_CSPGs_LP Immunoglob 99.2 7E-10 1.5E-14 70.0 10.4 83 22-104 1-103 (106)
215 cd05862 Ig1_VEGFR First immuno 99.2 5.5E-10 1.2E-14 67.3 9.4 80 127-207 1-85 (86)
216 cd05774 Ig_CEACAM_D1 First imm 99.2 3.4E-10 7.4E-15 70.4 8.6 84 13-102 3-104 (105)
217 cd05900 Ig_Aggrecan Immunoglob 99.1 1.5E-09 3.2E-14 68.4 10.5 83 22-104 1-109 (112)
218 cd05897 Ig2_IL1R2_like Second 99.1 4.2E-10 9.1E-15 68.4 7.7 71 123-198 6-81 (95)
219 cd04983 IgV_TCR_alpha_like Imm 99.1 4.2E-10 9E-15 71.5 8.2 78 12-92 2-93 (109)
220 cd05885 Ig2_Necl-4 Second immu 99.1 8.2E-10 1.8E-14 64.6 8.4 65 130-198 2-69 (80)
221 cd05879 Ig_P0 Immunoglobulin ( 99.1 2.2E-09 4.7E-14 68.2 11.0 79 14-93 4-104 (116)
222 cd05713 Ig_MOG_like Immunoglob 99.1 1.3E-09 2.7E-14 68.1 9.7 81 23-103 1-99 (100)
223 smart00410 IG_like Immunoglobu 99.1 5.2E-09 1.1E-13 63.1 12.2 81 122-206 4-85 (86)
224 smart00409 IG Immunoglobulin. 99.1 5.2E-09 1.1E-13 63.1 12.2 81 122-206 4-85 (86)
225 cd05845 Ig2_L1-CAM_like Second 99.1 5E-10 1.1E-14 67.9 7.3 73 119-197 10-84 (95)
226 PF13895 Ig_2: Immunoglobulin 99.1 7.1E-10 1.5E-14 66.2 8.0 71 122-206 9-80 (80)
227 PF00047 ig: Immunoglobulin do 99.1 5.5E-10 1.2E-14 63.5 7.0 63 127-191 1-64 (64)
228 cd05878 Ig_Aggrecan_like Immun 99.1 2.6E-09 5.7E-14 67.5 10.6 83 22-104 1-107 (110)
229 cd05759 Ig2_KIRREL3-like Secon 99.1 2.6E-09 5.6E-14 64.0 10.0 71 130-201 2-75 (82)
230 cd05877 Ig_LP_like Immunoglobu 99.1 2.4E-09 5.1E-14 67.6 10.2 81 22-104 1-103 (106)
231 cd07690 Ig1_CD4 First immunogl 99.1 1.2E-09 2.6E-14 66.5 8.4 76 122-197 2-90 (94)
232 PHA03376 BARF1; Provisional 99.1 3.5E-09 7.6E-14 70.6 11.0 121 121-254 20-158 (221)
233 PF13927 Ig_3: Immunoglobulin 99.1 4.1E-10 8.8E-15 66.3 6.0 74 8-90 1-75 (75)
234 cd05717 Ig1_Necl-1-3_like Firs 99.1 3.5E-09 7.6E-14 65.3 10.3 84 120-205 5-94 (95)
235 cd05871 Ig_Semaphorin_classIII 99.1 2.6E-09 5.6E-14 65.0 9.5 79 122-207 6-89 (91)
236 cd05751 Ig1_LILRB1_like First 99.1 9.1E-10 2E-14 67.2 7.3 74 8-91 2-75 (91)
237 KOG3515|consensus 99.1 1.7E-09 3.7E-14 87.6 10.7 233 4-254 93-335 (741)
238 cd05899 IgV_TCR_beta Immunoglo 99.0 2.3E-09 5E-14 68.1 8.2 77 12-91 2-94 (110)
239 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 5E-09 1.1E-13 63.9 8.8 79 122-206 10-104 (104)
240 cd05718 Ig1_PVR_like First imm 99.0 6.4E-09 1.4E-13 64.6 9.3 78 24-103 1-97 (98)
241 cd05883 Ig2_Necl-2 Second immu 99.0 2E-08 4.3E-13 59.0 10.0 76 130-206 2-79 (82)
242 cd05902 Ig_Neurocan Immunoglob 99.0 1.3E-08 2.8E-13 63.9 10.0 83 22-104 1-107 (110)
243 cd05883 Ig2_Necl-2 Second immu 99.0 2E-08 4.2E-13 59.0 9.8 76 26-103 2-79 (82)
244 cd05741 Ig_CEACAM_D1_like Firs 99.0 9E-09 2E-13 63.2 8.8 73 23-101 1-90 (92)
245 cd05880 Ig_EVA1 Immunoglobulin 99.0 2E-08 4.3E-13 64.1 10.3 79 14-93 4-103 (115)
246 cd04980 IgV_L_kappa Immunoglob 98.9 8.2E-09 1.8E-13 65.1 8.4 78 11-91 3-93 (106)
247 cd00098 IgC Immunoglobulin Con 98.9 5.3E-09 1.2E-13 64.6 7.3 74 21-94 11-87 (95)
248 cd05881 Ig1_Necl-2 First (N-te 98.9 5.9E-08 1.3E-12 59.1 11.2 72 120-193 5-83 (95)
249 cd05775 Ig_SLAM-CD84_like_N N- 98.9 9.5E-09 2.1E-13 63.5 7.9 80 21-103 2-96 (97)
250 cd05888 Ig1_Nectin-4_like Frst 98.9 3.1E-08 6.7E-13 61.6 9.9 78 25-103 2-99 (100)
251 cd05879 Ig_P0 Immunoglobulin ( 98.9 5.5E-08 1.2E-12 61.8 11.1 79 120-198 6-106 (116)
252 cd05901 Ig_Versican Immunoglob 98.9 4.7E-08 1E-12 61.5 10.6 82 23-104 2-114 (117)
253 cd05761 Ig2_Necl-1-4_like Seco 98.9 2.4E-08 5.1E-13 59.6 8.8 68 26-94 2-70 (82)
254 cd04982 IgV_TCR_gamma Immunogl 98.9 1.1E-08 2.4E-13 65.7 7.8 78 12-90 2-98 (116)
255 PF07686 V-set: Immunoglobulin 98.9 2.2E-08 4.7E-13 64.1 9.1 80 11-91 4-101 (114)
256 cd05715 Ig_P0-like Immunoglobu 98.9 2.8E-08 6.1E-13 63.7 9.4 79 14-93 4-104 (116)
257 cd05711 Ig_FcalphaRI Immunoglo 98.9 2.8E-08 6E-13 60.9 8.8 76 8-90 1-76 (94)
258 cd00099 IgV Immunoglobulin var 98.9 9.6E-09 2.1E-13 64.7 6.9 74 19-93 2-91 (105)
259 cd07705 Ig2_Necl-1 Second immu 98.9 3.9E-08 8.5E-13 58.7 9.1 68 26-94 2-71 (83)
260 cd05774 Ig_CEACAM_D1 First imm 98.9 2.9E-08 6.2E-13 61.8 8.6 79 122-205 8-104 (105)
261 PHA02987 Ig domain OX-2-like p 98.9 5.9E-08 1.3E-12 65.2 10.5 87 17-105 24-123 (189)
262 cd05872 Ig_Sema4B_like Immunog 98.9 2.7E-08 5.9E-13 59.1 8.0 63 121-192 5-67 (85)
263 cd05714 Ig_CSPGs_LP Immunoglob 98.9 5.7E-08 1.2E-12 61.2 10.0 81 126-207 1-103 (106)
264 cd05846 Ig1_MRC-OX-2_like Firs 98.9 3.6E-08 7.8E-13 61.0 8.8 79 23-103 1-96 (97)
265 cd05886 Ig1_Nectin-1_like Firs 98.9 8.7E-08 1.9E-12 59.0 10.2 77 25-103 2-98 (99)
266 cd05884 Ig2_Necl-3 Second immu 98.8 2.7E-08 6E-13 59.2 7.5 69 26-94 2-71 (83)
267 cd05900 Ig_Aggrecan Immunoglob 98.8 1.1E-07 2.4E-12 60.0 10.5 82 126-207 1-109 (112)
268 cd05755 Ig2_ICAM-1_like Second 98.8 7.7E-08 1.7E-12 58.9 9.3 81 11-94 4-87 (100)
269 cd05761 Ig2_Necl-1-4_like Seco 98.8 5.8E-08 1.3E-12 58.0 8.6 67 130-198 2-71 (82)
270 cd00098 IgC Immunoglobulin Con 98.8 3.7E-08 8E-13 60.8 8.0 73 125-197 11-87 (95)
271 cd04983 IgV_TCR_alpha_like Imm 98.8 7.7E-08 1.7E-12 61.0 9.6 77 119-195 5-93 (109)
272 cd05877 Ig_LP_like Immunoglobu 98.8 1.6E-07 3.4E-12 59.2 10.7 81 126-207 1-103 (106)
273 cd07705 Ig2_Necl-1 Second immu 98.8 1.5E-07 3.2E-12 56.2 9.5 68 130-198 2-72 (83)
274 cd07706 IgV_TCR_delta Immunogl 98.8 5.4E-08 1.2E-12 62.4 7.9 79 11-90 2-93 (116)
275 cd05718 Ig1_PVR_like First imm 98.8 1.6E-07 3.4E-12 58.4 9.8 78 128-206 1-97 (98)
276 cd05887 Ig1_Nectin-3_like Firs 98.8 1.6E-07 3.4E-12 57.4 9.1 78 24-103 1-95 (96)
277 PF13927 Ig_3: Immunoglobulin 98.8 1.3E-08 2.7E-13 59.8 4.2 57 130-193 18-75 (75)
278 cd07699 IgC_L Immunoglobulin C 98.8 5.7E-08 1.2E-12 60.2 7.1 86 8-93 1-90 (100)
279 cd05751 Ig1_LILRB1_like First 98.8 7.7E-08 1.7E-12 58.7 7.6 65 122-194 11-75 (91)
280 cd05878 Ig_Aggrecan_like Immun 98.7 3.6E-07 7.8E-12 57.8 10.8 82 126-207 1-107 (110)
281 cd05888 Ig1_Nectin-4_like Frst 98.7 2.7E-07 6E-12 57.3 10.1 36 171-206 63-99 (100)
282 cd07694 Ig2_CD4 Second immunog 98.7 2.4E-07 5.1E-12 54.4 8.8 75 18-104 9-86 (88)
283 cd05712 Ig_Siglec_N Immunoglob 98.7 3.9E-07 8.4E-12 58.6 10.8 78 13-91 4-102 (119)
284 cd05713 Ig_MOG_like Immunoglob 98.7 2.4E-07 5.2E-12 57.7 9.6 35 172-206 65-99 (100)
285 PF08205 C2-set_2: CD80-like C 98.7 1.9E-07 4.1E-12 56.8 8.8 85 9-94 1-86 (89)
286 cd05741 Ig_CEACAM_D1_like Firs 98.7 1.4E-07 3.1E-12 57.8 8.3 66 127-197 1-82 (92)
287 cd05886 Ig1_Nectin-1_like Firs 98.7 6.3E-07 1.4E-11 55.2 10.5 36 171-206 62-98 (99)
288 cd04984 IgV_L_lambda Immunoglo 98.7 8.5E-08 1.8E-12 59.5 6.7 69 19-90 2-84 (98)
289 cd05880 Ig_EVA1 Immunoglobulin 98.7 5.9E-07 1.3E-11 57.3 10.3 78 120-197 6-104 (115)
290 cd05899 IgV_TCR_beta Immunoglo 98.7 2.7E-07 6E-12 58.5 8.3 75 119-195 5-95 (110)
291 cd05902 Ig_Neurocan Immunoglob 98.7 8.9E-07 1.9E-11 55.6 10.3 81 127-207 2-107 (110)
292 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.2E-07 4.7E-12 57.4 7.5 77 126-206 3-96 (97)
293 cd05772 IgC_SIRP Signal-regula 98.6 9.4E-07 2E-11 55.7 10.4 73 19-93 17-93 (111)
294 cd07698 IgC_MHC_I_alpha3 Class 98.6 4.2E-07 9.1E-12 55.7 8.6 80 8-93 2-84 (93)
295 cd00099 IgV Immunoglobulin var 98.6 2.5E-07 5.4E-12 58.2 7.8 74 123-196 2-91 (105)
296 cd05716 Ig_pIgR Immunoglobulin 98.6 2E-07 4.3E-12 57.9 7.1 74 18-92 2-87 (98)
297 smart00407 IGc1 Immunoglobulin 98.6 4.6E-07 1E-11 53.0 8.2 68 25-92 1-71 (75)
298 cd05901 Ig_Versican Immunoglob 98.6 1.7E-06 3.7E-11 54.5 10.9 37 171-207 78-114 (117)
299 cd05846 Ig1_MRC-OX-2_like Firs 98.6 8.2E-07 1.8E-11 54.9 9.5 79 127-206 1-96 (97)
300 cd05847 IgC_CH2_IgE CH2 domain 98.6 7.2E-07 1.6E-11 54.4 8.7 74 20-93 11-87 (94)
301 cd05715 Ig_P0-like Immunoglobu 98.6 1.2E-06 2.7E-11 56.1 10.2 78 120-197 6-105 (116)
302 cd05887 Ig1_Nectin-3_like Firs 98.6 1.3E-06 2.8E-11 53.4 9.6 77 129-206 2-95 (96)
303 cd05884 Ig2_Necl-3 Second immu 98.6 8.1E-07 1.7E-11 52.9 8.3 68 130-197 2-71 (83)
304 cd04980 IgV_L_kappa Immunoglob 98.6 6.6E-07 1.4E-11 56.4 8.2 74 119-194 7-93 (106)
305 cd05889 Ig1_DNAM-1_like First 98.6 1.6E-06 3.5E-11 53.0 9.5 75 24-100 1-92 (96)
306 cd07696 IgC_CH3 CH3 domain (th 98.6 5.4E-07 1.2E-11 55.2 7.5 81 14-94 5-88 (96)
307 cd07700 IgV_CD8_beta Immunoglo 98.6 4.9E-07 1.1E-11 57.0 7.5 69 19-90 2-93 (107)
308 cd05755 Ig2_ICAM-1_like Second 98.6 1.1E-06 2.4E-11 53.8 8.6 73 124-198 13-88 (100)
309 cd05716 Ig_pIgR Immunoglobulin 98.6 8.1E-07 1.8E-11 55.1 8.2 73 123-195 3-87 (98)
310 cd05711 Ig_FcalphaRI Immunoglo 98.6 1.2E-06 2.6E-11 53.7 8.8 67 122-193 10-76 (94)
311 cd00096 Ig Immunoglobulin doma 98.5 1.3E-06 2.8E-11 50.3 8.6 66 26-92 1-66 (74)
312 cd04982 IgV_TCR_gamma Immunogl 98.5 9.1E-07 2E-11 56.7 8.3 75 119-193 5-98 (116)
313 cd05766 IgC_MHC_II_beta Class 98.5 3.4E-06 7.4E-11 51.6 10.4 72 20-94 11-85 (94)
314 cd05772 IgC_SIRP Signal-regula 98.5 3.7E-06 8.1E-11 53.0 10.7 80 124-204 18-101 (111)
315 PF07686 V-set: Immunoglobulin 98.5 8E-07 1.7E-11 56.8 7.8 75 120-194 9-101 (114)
316 cd05769 IgC_TCR_beta T cell re 98.5 1.4E-06 3E-11 55.2 8.3 89 8-96 2-96 (115)
317 cd05770 IgC_beta2m Class I maj 98.5 5.5E-06 1.2E-10 50.3 10.5 70 20-92 12-83 (93)
318 cd05768 IgC_CH4 CH4 domain (fo 98.5 1.1E-06 2.5E-11 54.5 7.2 79 15-93 8-92 (102)
319 cd04981 IgV_H Immunoglobulin ( 98.4 2.5E-06 5.5E-11 54.6 8.5 76 14-90 3-97 (117)
320 PHA03271 envelope glycoprotein 98.4 0.00032 7E-09 53.3 20.5 184 7-197 93-337 (490)
321 cd05767 IgC_MHC_II_alpha Class 98.4 6.1E-06 1.3E-10 50.3 9.6 81 8-92 1-84 (94)
322 cd07706 IgV_TCR_delta Immunogl 98.4 2.4E-06 5.2E-11 54.8 8.2 76 119-194 6-94 (116)
323 cd05720 Ig_CD8_alpha Immunoglo 98.4 1.8E-06 3.9E-11 54.0 6.8 71 19-90 2-90 (104)
324 PF07654 C1-set: Immunoglobuli 98.4 4.5E-06 9.8E-11 49.9 8.2 71 21-94 6-79 (83)
325 cd04984 IgV_L_lambda Immunoglo 98.4 3.1E-06 6.7E-11 52.4 7.6 69 123-193 2-84 (98)
326 PHA02987 Ig domain OX-2-like p 98.4 9E-06 1.9E-10 54.9 10.0 86 121-208 24-123 (189)
327 cd00096 Ig Immunoglobulin doma 98.4 7E-06 1.5E-10 47.1 8.7 66 130-195 1-66 (74)
328 PF08205 C2-set_2: CD80-like C 98.4 3.6E-06 7.8E-11 51.1 7.4 72 127-198 14-87 (89)
329 smart00407 IGc1 Immunoglobulin 98.4 9.5E-06 2.1E-10 47.4 8.8 66 130-195 2-71 (75)
330 cd05712 Ig_Siglec_N Immunoglob 98.3 1.1E-05 2.3E-10 51.9 9.4 76 119-194 6-102 (119)
331 cd04985 IgC_CH1 CH1 domain (fi 98.3 1.3E-05 2.8E-10 49.1 9.2 70 22-92 15-87 (95)
332 cd07699 IgC_L Immunoglobulin C 98.3 2.9E-06 6.3E-11 52.6 6.4 75 124-198 14-92 (100)
333 cd05768 IgC_CH4 CH4 domain (fo 98.3 3E-06 6.6E-11 52.6 6.4 72 126-197 15-93 (102)
334 cd07694 Ig2_CD4 Second immunog 98.3 1.1E-05 2.4E-10 47.5 8.3 74 123-206 10-85 (88)
335 cd07696 IgC_CH3 CH3 domain (th 98.3 5.3E-06 1.2E-10 50.9 7.3 77 123-199 10-90 (96)
336 cd07697 IgC_TCR_gamma T cell r 98.3 8.3E-06 1.8E-10 49.8 7.8 71 19-92 12-85 (96)
337 cd05719 Ig2_PVR_like Second im 98.3 1.3E-05 2.7E-10 49.1 8.4 70 22-94 14-84 (95)
338 cd05769 IgC_TCR_beta T cell re 98.3 7.4E-06 1.6E-10 51.8 7.5 77 126-202 17-99 (115)
339 cd05889 Ig1_DNAM-1_like First 98.3 2.3E-05 5.1E-10 47.9 9.4 33 172-204 60-93 (96)
340 cd07698 IgC_MHC_I_alpha3 Class 98.2 3E-05 6.5E-10 47.4 9.6 68 127-197 14-85 (93)
341 PF07654 C1-set: Immunoglobuli 98.2 2.3E-05 5E-10 46.8 9.0 69 126-197 7-79 (83)
342 cd04986 IgC_CH2 CH2 domain (se 98.2 6.6E-06 1.4E-10 50.3 6.4 84 8-93 3-90 (99)
343 cd05847 IgC_CH2_IgE CH2 domain 98.2 1.4E-05 3.1E-10 48.8 7.9 72 126-197 13-88 (94)
344 cd07692 Ig_CD3_epsilon Immunog 98.2 3.4E-06 7.3E-11 46.6 4.5 53 20-91 4-56 (65)
345 cd07703 Ig2_Nectin-2_like Seco 98.2 1.9E-05 4.1E-10 48.2 8.0 76 23-101 15-91 (95)
346 smart00406 IGv Immunoglobulin 98.2 7.2E-06 1.6E-10 48.7 6.1 63 25-88 1-81 (81)
347 cd07700 IgV_CD8_beta Immunoglo 98.2 2E-05 4.3E-10 49.7 8.0 69 123-193 2-93 (107)
348 KOG1480|consensus 98.2 1.4E-06 3E-11 70.5 3.2 177 6-197 22-208 (909)
349 cd05766 IgC_MHC_II_beta Class 98.2 6.5E-05 1.4E-09 45.9 9.8 71 126-199 13-87 (94)
350 cd04981 IgV_H Immunoglobulin ( 98.2 3.1E-05 6.7E-10 49.6 8.7 75 119-193 4-97 (117)
351 PHA03273 envelope glycoprotein 98.1 0.00041 8.8E-09 53.5 15.5 122 70-197 199-327 (486)
352 cd05719 Ig2_PVR_like Second im 98.1 6.2E-05 1.3E-09 46.0 9.4 75 128-205 16-92 (95)
353 cd04985 IgC_CH1 CH1 domain (fi 98.1 3.1E-05 6.7E-10 47.4 7.9 69 126-195 15-87 (95)
354 PHA03270 envelope glycoprotein 98.1 0.0005 1.1E-08 52.6 15.1 137 4-153 217-361 (466)
355 PHA03270 envelope glycoprotein 98.1 0.00065 1.4E-08 52.0 15.6 120 70-197 183-310 (466)
356 cd05770 IgC_beta2m Class I maj 98.1 8.8E-05 1.9E-09 45.1 9.2 69 126-197 14-85 (93)
357 cd05767 IgC_MHC_II_alpha Class 98.1 9.1E-05 2E-09 45.2 9.2 68 127-197 15-86 (94)
358 cd07697 IgC_TCR_gamma T cell r 98.1 7.7E-05 1.7E-09 45.6 8.6 68 126-195 15-85 (96)
359 cd05720 Ig_CD8_alpha Immunoglo 98.0 3.5E-05 7.7E-10 48.2 7.2 68 124-193 3-90 (104)
360 cd04986 IgC_CH2 CH2 domain (se 98.0 1.7E-05 3.7E-10 48.5 5.5 71 124-196 16-90 (99)
361 cd07703 Ig2_Nectin-2_like Seco 98.0 0.00013 2.8E-09 44.5 9.2 75 128-205 16-92 (95)
362 PHA03273 envelope glycoprotein 98.0 0.00065 1.4E-08 52.5 14.6 132 6-150 235-376 (486)
363 PHA03269 envelope glycoprotein 98.0 0.001 2.3E-08 51.7 15.4 120 69-196 289-418 (566)
364 PHA03269 envelope glycoprotein 98.0 0.00062 1.3E-08 52.9 13.9 136 4-152 325-470 (566)
365 cd07704 Ig2_Nectin-3-4_like Se 98.0 0.00013 2.8E-09 44.5 8.3 73 18-93 11-85 (97)
366 cd05721 IgV_CTLA-4 Immunoglobu 97.9 0.00014 3E-09 45.5 7.9 73 13-88 3-93 (115)
367 PHA03271 envelope glycoprotein 97.9 0.0026 5.6E-08 48.6 15.2 133 8-153 247-387 (490)
368 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00028 6.1E-09 43.0 8.6 75 121-198 10-87 (97)
369 PHA02633 hypothetical protein; 97.9 7.1E-05 1.5E-09 40.6 5.2 36 70-105 19-54 (63)
370 smart00406 IGv Immunoglobulin 97.9 0.00012 2.6E-09 43.4 6.9 62 130-191 2-81 (81)
371 PHA02914 Immunoglobulin-like d 97.8 0.0084 1.8E-07 45.7 18.7 85 123-207 275-381 (500)
372 cd07691 Ig_CD3_gamma_delta Imm 97.8 9.3E-05 2E-09 41.2 4.9 49 23-90 6-54 (69)
373 cd07692 Ig_CD3_epsilon Immunog 97.8 6.9E-05 1.5E-09 41.5 4.3 50 126-193 6-55 (65)
374 PHA02982 hypothetical protein; 97.7 0.0074 1.6E-07 41.7 14.4 163 16-194 32-219 (251)
375 PF08204 V-set_CD47: CD47 immu 97.6 0.00011 2.3E-09 47.1 4.4 84 19-103 23-119 (130)
376 cd07689 Ig2_VCAM-1 Second immu 97.5 0.0011 2.3E-08 40.3 6.9 69 20-90 12-84 (99)
377 KOG0613|consensus 97.4 0.0012 2.5E-08 57.4 8.4 174 70-250 279-467 (1205)
378 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0025 5.5E-08 40.0 7.8 72 120-191 6-93 (115)
379 PF11465 Receptor_2B4: Natural 97.3 0.0027 5.9E-08 38.8 7.4 35 70-104 72-107 (108)
380 PHA02914 Immunoglobulin-like d 97.3 0.034 7.4E-07 42.6 14.5 167 16-196 272-468 (500)
381 PHA02633 hypothetical protein; 97.2 0.00099 2.1E-08 36.2 4.4 36 173-208 19-54 (63)
382 cd07691 Ig_CD3_gamma_delta Imm 97.1 0.0044 9.4E-08 34.7 6.1 49 127-193 6-54 (69)
383 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0085 1.8E-07 36.5 7.6 71 124-196 12-87 (99)
384 PHA03042 CD47-like protein; Pr 97.0 0.0085 1.8E-07 43.3 8.1 70 21-102 29-103 (286)
385 PF02124 Marek_A: Marek's dise 96.7 0.12 2.6E-06 36.4 15.0 106 37-153 6-117 (211)
386 KOG1480|consensus 96.5 0.00099 2.1E-08 54.8 1.2 76 11-94 132-208 (909)
387 KOG4597|consensus 96.5 0.0041 9E-08 48.3 4.2 92 11-105 199-293 (560)
388 PHA02982 hypothetical protein; 96.4 0.047 1E-06 38.0 8.4 81 122-206 34-135 (251)
389 PF08204 V-set_CD47: CD47 immu 96.4 0.0048 1E-07 39.7 3.3 84 123-207 23-120 (130)
390 PF05790 C2-set: Immunoglobuli 96.1 0.11 2.4E-06 30.5 7.9 51 37-102 26-77 (80)
391 PHA02865 MHC-like TNF binding 96.0 0.092 2E-06 39.8 8.8 21 25-45 216-238 (338)
392 PF06328 Lep_receptor_Ig: Ig-l 95.7 0.14 3.1E-06 30.8 7.4 70 13-89 8-82 (89)
393 TIGR00864 PCC polycystin catio 95.6 2.5 5.4E-05 41.6 20.6 190 16-254 1705-1901(2740)
394 PF11465 Receptor_2B4: Natural 95.6 0.24 5.3E-06 30.6 8.0 34 173-206 72-106 (108)
395 KOG4597|consensus 95.6 0.029 6.3E-07 43.9 4.9 84 123-208 207-293 (560)
396 PF07354 Sp38: Zona-pellucida- 95.0 0.052 1.1E-06 39.3 4.5 49 36-92 11-60 (271)
397 PF07354 Sp38: Zona-pellucida- 95.0 0.058 1.3E-06 39.0 4.6 48 141-195 12-60 (271)
398 PHA02865 MHC-like TNF binding 94.9 0.27 5.9E-06 37.4 8.2 67 129-196 216-305 (338)
399 PF05790 C2-set: Immunoglobuli 94.9 0.42 9.1E-06 28.1 7.4 32 173-204 44-76 (80)
400 PHA03042 CD47-like protein; Pr 94.8 0.26 5.6E-06 36.0 7.5 71 124-205 28-103 (286)
401 PHA03052 Hypothetical protein; 94.7 0.12 2.6E-06 28.7 4.4 38 14-51 3-43 (69)
402 cd05890 Ig2_Nectin-1_like Seco 94.7 0.37 8E-06 29.1 6.7 74 129-205 22-97 (98)
403 KOG0613|consensus 94.6 0.081 1.7E-06 46.8 5.4 174 13-196 339-517 (1205)
404 cd05890 Ig2_Nectin-1_like Seco 93.6 0.49 1.1E-05 28.6 5.8 63 26-93 23-88 (98)
405 KOG1026|consensus 92.6 0.37 8.1E-06 40.9 5.8 158 18-207 202-363 (774)
406 PF03921 ICAM_N: Intercellular 91.5 2 4.3E-05 26.0 10.2 78 11-104 6-86 (91)
407 TIGR00864 PCC polycystin catio 91.4 17 0.00037 36.5 19.9 197 15-254 1874-2077(2740)
408 PF06832 BiPBP_C: Penicillin-B 91.3 2 4.4E-05 25.8 10.2 74 5-95 7-84 (89)
409 PHA03189 UL14 tegument protein 90.3 3.7 7.9E-05 30.8 8.1 87 15-103 59-167 (348)
410 PHA03240 envelope glycoprotein 88.8 0.76 1.6E-05 32.2 3.7 69 17-85 32-121 (258)
411 PHA03112 IL-18 binding protein 87.8 5 0.00011 26.5 6.7 73 21-93 36-120 (141)
412 PHA03052 Hypothetical protein; 85.9 3.7 8E-05 23.1 4.6 34 120-153 5-41 (69)
413 PF02124 Marek_A: Marek's dise 82.8 15 0.00032 26.3 10.1 97 143-254 8-110 (211)
414 PF06328 Lep_receptor_Ig: Ig-l 82.7 8.3 0.00018 23.3 7.7 65 122-192 13-82 (89)
415 PHA03283 envelope glycoprotein 81.9 27 0.0006 28.7 16.1 79 70-148 135-233 (542)
416 PHA03112 IL-18 binding protein 81.8 9.2 0.0002 25.3 5.9 77 125-201 36-125 (141)
417 PF11049 KSHV_K1: Glycoprotein 81.5 3.4 7.4E-05 23.0 3.3 44 27-90 2-45 (71)
418 PF03921 ICAM_N: Intercellular 76.9 14 0.0003 22.4 8.2 79 118-208 9-87 (91)
419 PF00801 PKD: PKD domain; Int 70.6 17 0.00036 20.4 4.5 29 18-46 6-34 (69)
420 PF01688 Herpes_gI: Alphaherpe 68.4 15 0.00032 25.0 4.4 25 70-94 125-149 (161)
421 PHA02935 Hypothetical protein; 67.8 28 0.0006 24.5 5.7 92 144-246 69-166 (349)
422 PF11141 DUF2914: Protein of u 67.0 21 0.00045 20.1 7.3 58 143-206 8-65 (66)
423 PHA03286 envelope glycoprotein 66.7 69 0.0015 26.0 11.0 79 70-148 128-225 (492)
424 PF05955 Herpes_gp2: Equine he 65.8 42 0.0009 23.2 14.0 63 133-195 113-179 (226)
425 KOG0200|consensus 64.6 79 0.0017 27.2 9.0 113 70-193 14-138 (609)
426 PF02480 Herpes_gE: Alphaherpe 62.7 8.7 0.00019 31.1 3.0 79 70-148 90-189 (439)
427 PF01688 Herpes_gI: Alphaherpe 62.6 25 0.00054 24.0 4.6 26 173-198 125-150 (161)
428 PHA03189 UL14 tegument protein 62.6 68 0.0015 24.5 8.7 19 178-196 139-157 (348)
429 PHA03240 envelope glycoprotein 57.3 28 0.00061 24.8 4.3 27 171-197 104-130 (258)
430 COG5475 Uncharacterized small 55.4 27 0.00058 18.8 3.0 26 173-200 19-44 (60)
431 PF06832 BiPBP_C: Penicillin-B 54.7 44 0.00096 19.9 9.1 56 129-200 31-86 (89)
432 PHA03282 envelope glycoprotein 47.4 69 0.0015 26.2 5.5 22 173-194 125-146 (540)
433 PF09085 Adhes-Ig_like: Adhesi 45.3 71 0.0015 19.6 4.4 43 7-51 2-49 (110)
434 PHA03289 envelope glycoprotein 42.8 70 0.0015 24.6 4.7 25 70-94 123-147 (352)
435 PHA03282 envelope glycoprotein 42.7 63 0.0014 26.4 4.6 35 70-104 125-161 (540)
436 PF05955 Herpes_gp2: Equine he 42.1 1.2E+02 0.0025 21.2 6.1 63 30-92 114-179 (226)
437 PHA03290 envelope glycoprotein 40.9 77 0.0017 24.6 4.7 36 70-105 130-167 (357)
438 PHA03283 envelope glycoprotein 40.0 2.3E+02 0.0049 23.8 8.4 36 173-208 135-170 (542)
439 PF02480 Herpes_gE: Alphaherpe 39.8 26 0.00055 28.6 2.3 21 70-90 270-290 (439)
440 PF11141 DUF2914: Protein of u 39.7 71 0.0015 18.0 8.8 58 39-103 8-65 (66)
441 PHA03292 envelope glycoprotein 39.0 73 0.0016 25.2 4.4 35 70-104 129-165 (413)
442 PRK14081 triple tyrosine motif 38.3 2.8E+02 0.006 24.4 18.6 189 20-247 302-509 (667)
443 PHA03289 envelope glycoprotein 37.7 1E+02 0.0022 23.8 4.9 25 173-197 123-147 (352)
444 PHA03281 envelope glycoprotein 36.5 2.7E+02 0.0057 23.6 10.0 79 70-148 299-394 (642)
445 PHA03290 envelope glycoprotein 35.3 1.2E+02 0.0025 23.7 4.8 25 173-197 130-154 (357)
446 KOG1026|consensus 35.3 79 0.0017 27.9 4.5 72 123-208 203-274 (774)
447 PHA03292 envelope glycoprotein 35.0 1E+02 0.0022 24.5 4.6 26 173-198 129-154 (413)
448 PF12988 DUF3872: Domain of un 30.7 52 0.0011 21.7 2.2 24 10-33 34-57 (137)
449 PF10430 Ig_Tie2_1: Tie-2 Ig-l 28.8 1.4E+02 0.003 18.1 7.3 21 24-44 16-37 (96)
450 PHA03286 envelope glycoprotein 27.8 2.7E+02 0.0058 22.9 5.9 36 173-208 128-164 (492)
451 PHA03291 envelope glycoprotein 27.0 1.5E+02 0.0034 23.2 4.4 25 70-94 130-154 (401)
452 COG4953 PbpC Membrane carboxyp 26.9 4E+02 0.0087 23.4 7.0 52 26-94 672-723 (733)
453 PF06214 SLAM: Signaling lymph 25.1 1.5E+02 0.0032 18.9 3.3 20 173-192 104-123 (126)
454 PHA03291 envelope glycoprotein 24.1 2.1E+02 0.0046 22.5 4.6 26 173-198 130-155 (401)
455 KOG3611|consensus 23.6 2.2E+02 0.0048 25.3 5.2 22 70-91 613-634 (737)
456 PF15096 G6B: G6B family 23.0 2.8E+02 0.0061 19.6 6.0 27 76-105 81-107 (224)
457 PRK09919 anti-adapter protein 21.6 1.9E+02 0.0042 18.5 3.4 18 39-56 29-46 (114)
458 PF02440 Adeno_E3_CR1: Adenovi 20.3 1.8E+02 0.0039 16.3 4.7 21 20-44 2-22 (63)
459 smart00089 PKD Repeats in poly 20.3 1.8E+02 0.004 16.4 8.9 27 21-47 12-39 (79)
No 1
>KOG3513|consensus
Probab=100.00 E-value=1.6e-33 Score=228.39 Aligned_cols=223 Identities=29% Similarity=0.499 Sum_probs=188.4
Q ss_pred CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG 82 (254)
Q Consensus 3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 82 (254)
|.+..+|.+++.+++..+..|++++|.|.+.|.|.|.++|++||.++....+..-.....+ .|+|.+++..|+|
T Consensus 326 v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g------~L~is~v~~~dsg 399 (1051)
T KOG3513|consen 326 VTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDG------TLIISNVQESDSG 399 (1051)
T ss_pred EEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCC------EEEEEecccccCe
Confidence 4567899999999999999999999999999999999999999999986655221111122 7999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCe--eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcce
Q psy7036 83 LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI--RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK 160 (254)
Q Consensus 83 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~ 160 (254)
.|+|.|.|..|...+.+.|+|.. .+|.+...+.. ..+..|..+.|.|...+.|.+.++|.+++..+..+ .+
T Consensus 400 ~YQC~A~Nk~G~i~anA~L~V~a-----~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~--~r 472 (1051)
T KOG3513|consen 400 VYQCIAENKYGTIYANAELKVLA-----SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS--GR 472 (1051)
T ss_pred EEEeeeecccceEeeeeEEEEEc-----cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC--ce
Confidence 99999999999999999999975 44555444332 46678999999999999999999999998854333 35
Q ss_pred EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEE
Q psy7036 161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240 (254)
Q Consensus 161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l 240 (254)
+....+| +|.|.+++.+|+|.|+|.|.|..|.+..+..|.|+. ++.+...|....+..|+ ++.|
T Consensus 473 ~~i~edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----------~tri~~~P~~~~v~~g~-~v~l 536 (1051)
T KOG3513|consen 473 IRILEDG-----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----------ATRITLAPSNTDVKVGE-SVTL 536 (1051)
T ss_pred EEECCCC-----cEEecccCcccCcEEEEEEEcccCccceEEEEEEec----------CceEEeccchhhhccCc-eEEE
Confidence 5566677 799999999999999999999999999999999986 77788889999999999 9999
Q ss_pred EEEEeccCCC--ceeC
Q psy7036 241 ECRLVGEPEP--TISW 254 (254)
Q Consensus 241 ~C~~~~~p~p--~~~W 254 (254)
.|.+.-+|.. .|.|
T Consensus 537 ~Ce~shD~~ld~~f~W 552 (1051)
T KOG3513|consen 537 TCEASHDPSLDITFTW 552 (1051)
T ss_pred EeecccCCCcceEEEE
Confidence 9999877664 4666
No 2
>KOG3513|consensus
Probab=100.00 E-value=4.6e-32 Score=219.97 Aligned_cols=220 Identities=30% Similarity=0.560 Sum_probs=180.7
Q ss_pred CCCCCeeEe-CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 5 EDFAPSFTQ-KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 5 ~~~~p~~~~-~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
...+|.|.. .|+......|+.|.|.|-+.|.|.|++.|.|.|...... +... .. +...|.|.++...|+|.
T Consensus 237 ~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~-r~~~--~~-----~~~vL~I~nv~~~D~G~ 308 (1051)
T KOG3513|consen 237 REYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR-RATY--SN-----YGKVLKIPNVQYEDAGE 308 (1051)
T ss_pred cccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc-ceee--ec-----cccEEEecccCcCCCeE
Confidence 446777654 455677899999999999999999999999988742221 1111 11 11289999999999999
Q ss_pred EEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEE
Q psy7036 84 YKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFS 162 (254)
Q Consensus 84 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~ 162 (254)
|.|.+.|..|.......+.|. .+|.++..+.+..+..|+++.+.|.+.|.|.|.++|++||.++....+. +..
T Consensus 309 Y~C~AeN~~G~~~~~~~v~v~------a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~ 382 (1051)
T KOG3513|consen 309 YECIAENSRGSATHSGHVTVY------APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK 382 (1051)
T ss_pred EEEEEecccccceeeEEEEEe------cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence 999999999998889999987 7888888888999999999999999999999999999999998754442 233
Q ss_pred EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccc--cccCCCCcEEE
Q psy7036 163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK--QSDDDLNDIVI 240 (254)
Q Consensus 163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~--~~~~g~~~~~l 240 (254)
.. ++ .|.|+++...|+|.|.|.|+|.+|..-+.+.|.|... .|.+...|... .+..|+ .+.|
T Consensus 383 i~-~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~---------~P~f~~~p~~~~~~a~~g~-~v~i 446 (1051)
T KOG3513|consen 383 ID-DG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLAS---------APVFPLNPVERKVMAVVGG-TVTI 446 (1051)
T ss_pred Ee-CC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEcc---------CCCCCCCccceEEEEEeCC-eEEE
Confidence 33 33 8999999999999999999999999999999999863 45555555444 667888 9999
Q ss_pred EEEEeccCCCceeC
Q psy7036 241 ECRLVGEPEPTISW 254 (254)
Q Consensus 241 ~C~~~~~p~p~~~W 254 (254)
.|...+.|.|.++|
T Consensus 447 ~C~~~asP~p~~~W 460 (1051)
T KOG3513|consen 447 DCKPFASPKPKVSW 460 (1051)
T ss_pred eeccCCCCcceEEE
Confidence 99999999999999
No 3
>KOG4194|consensus
Probab=99.97 E-value=9.3e-30 Score=194.20 Aligned_cols=228 Identities=23% Similarity=0.406 Sum_probs=178.9
Q ss_pred CCCCeeEeCCCceeecCCCeEEEEEEEee--CCCCceEEEeCCEEeeeCC--cc-eEEEee-----cCCcceEEEEEEec
Q psy7036 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGETQLSEDT--RT-VMKTTP-----IGTNKYLVALELDD 75 (254)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~--~~-~~~~~~-----~~~~~~~~~l~i~~ 75 (254)
...|++...|+.+....|++++|+|.+.+ ..+..+.|.++++...... .+ .+.... .....+.+.|.+.|
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 35789999999999999999999999976 3456899999876332110 00 000000 11123455899999
Q ss_pred cCCCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe-c
Q psy7036 76 VIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ-V 153 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-~ 153 (254)
++..|+|.|+|++.|.+|+.. ..+.++|. ..|.+...+.+..+..|+...|.|.+.|.|.|.|.|.|+|.. .
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~------~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVN------QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEee------ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCC
Confidence 999999999999999999854 36677775 577888888999999999999999999999999999998765 5
Q ss_pred ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccC
Q psy7036 154 KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233 (254)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~ 233 (254)
+.....+.....+.. .+.|.+++.+|.|.|+|.|.|..|..++..++.|.. -|.+..+-.+..+..
T Consensus 655 PAA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------~p~f~~PL~~~~V~~ 720 (873)
T KOG4194|consen 655 PAARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------TPSFSIPLEDQLVVV 720 (873)
T ss_pred chhhhheeeecCCCC----EEEEecccccccceeEEeeeccccceeeceEEEEec----------CCcccccccceEEEe
Confidence 544444554444333 688999999999999999999999999999999886 445555566777888
Q ss_pred CCCcEEEEEEEeccCC-CceeC
Q psy7036 234 DLNDIVIECRLVGEPE-PTISW 254 (254)
Q Consensus 234 g~~~~~l~C~~~~~p~-p~~~W 254 (254)
|+ .+.|.|.+.+.|. |.+.|
T Consensus 721 ge-t~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 721 GE-TLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred cc-eEEEEEecCCCCCCccccc
Confidence 99 9999999999987 88888
No 4
>KOG4221|consensus
Probab=99.97 E-value=7.5e-29 Score=201.50 Aligned_cols=226 Identities=27% Similarity=0.489 Sum_probs=182.5
Q ss_pred CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
.....+.|...+.+..+..|+++.|.|.+.+.+.+.++|.+|+.++..+.+ +....++ .|.|.++.+.|.|.
T Consensus 136 ~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r--~i~lpsG------~L~I~~~qp~d~g~ 207 (1381)
T KOG4221|consen 136 ALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSR--VIVLPSG------ALEISGLQPSDTGE 207 (1381)
T ss_pred EecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCc--EEEcCCC------cEEecccccCCCce
Confidence 334567778888899999999999999999888889999999998887764 3333344 69999999999999
Q ss_pred EEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEE
Q psy7036 84 YKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS 162 (254)
Q Consensus 84 Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~ 162 (254)
|+|.+.+.... ....+.|+|...+.......+...+....+..|+++.|.|.+.+.|.|.+.|.+|+..+...+ .++.
T Consensus 208 yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~riv 286 (1381)
T KOG4221|consen 208 YRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIV 286 (1381)
T ss_pred EEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEE
Confidence 99999987644 344566777632222223335566777788899999999999999999999999999987665 4554
Q ss_pred EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEE
Q psy7036 163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242 (254)
Q Consensus 163 ~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C 242 (254)
....+ .|.|.+++..|+|.|+|.|.|......+...+.|.. +|.|...|......++- ++.|.|
T Consensus 287 l~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a----------~P~~~~~p~~l~A~e~~-die~ec 350 (1381)
T KOG4221|consen 287 LVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA----------PPGFTKAPTTLVAHESM-DIEFEC 350 (1381)
T ss_pred Eeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEc----------CCCCCCCCcceeeeecc-ceeEeC
Confidence 44333 799999999999999999999777777777788875 67788888888888877 999999
Q ss_pred EEeccCCCceeC
Q psy7036 243 RLVGEPEPTISW 254 (254)
Q Consensus 243 ~~~~~p~p~~~W 254 (254)
.+.|.|.|.+.|
T Consensus 351 ~~~g~p~p~v~w 362 (1381)
T KOG4221|consen 351 PVSGKPIPTVRW 362 (1381)
T ss_pred CCCCCCcceEEE
Confidence 999999999988
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=1e-25 Score=169.24 Aligned_cols=206 Identities=19% Similarity=0.292 Sum_probs=142.6
Q ss_pred ceeecCCCeEEEEEEE-----eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 17 LRQEDEGNRLIFECQL-----LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
...+.+|+.+.|.|.+ .|.|.+.++|+|+|.... + ......+. .|.|.++..+|+|.|+|.+.|.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~~g~-----~l~i~~~~~~DsG~Y~C~a~N~ 104 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPIDNGS-----NMLILNPTQSDSGIYICITKNE 104 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEccCCc-----eEEEcccCcccCeEEEEEEECC
Confidence 3456789999999997 577888999999975321 1 11111111 4789999999999999999999
Q ss_pred CCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-----EeeCCCCeEEEEECCEecccCCcceEEEcCC
Q psy7036 92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-----IQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166 (254)
Q Consensus 92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 166 (254)
.+....++.|.|.... ++.+........+.+|..+.+.|. ..+.+++.+.|+++.. +. ..++....+
T Consensus 105 ~g~~~~s~~L~V~~~~----~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~---~~r~~~~~~ 176 (326)
T PHA02785 105 TYCDMMSLNLTIVSVS----ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR---NKRLKQRTP 176 (326)
T ss_pred CcceEEEEEEEEEecC----CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC---CcceEecCC
Confidence 8887788888886421 121211223344668899999997 2357888999987542 21 122222223
Q ss_pred CCceeeEEEEccCCCCCceeEEEEEEcCCCcceE----EEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEE
Q psy7036 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA----TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242 (254)
Q Consensus 167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C 242 (254)
+ .|.|.+++.+|.|.|+|.+.|..+.... .+.+.|.. +..+|.+. .|....+..|+ .+.|.|
T Consensus 177 ~-----~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~-------~~~pp~~~-~p~~~~~~~G~-~v~L~C 242 (326)
T PHA02785 177 G-----IITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD-------RIIPPTMQ-LPEGVVTSIGS-NLTIAC 242 (326)
T ss_pred C-----eEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec-------cCCCceec-CCCcEEecCCC-cEEEEE
Confidence 2 7999999999999999999998876532 33444432 12244443 44566777888 999999
Q ss_pred EEeccCCC---ceeC
Q psy7036 243 RLVGEPEP---TISW 254 (254)
Q Consensus 243 ~~~~~p~p---~~~W 254 (254)
.|.|.|.+ .++|
T Consensus 243 ~a~g~P~~~~~~v~W 257 (326)
T PHA02785 243 RVSLRPPTTDADVFW 257 (326)
T ss_pred EEECCCCCCCceEEE
Confidence 99998874 7888
No 6
>KOG4222|consensus
Probab=99.95 E-value=7.6e-27 Score=188.94 Aligned_cols=224 Identities=26% Similarity=0.473 Sum_probs=172.0
Q ss_pred CCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEE-EeecCCcceEEEEEEecc-----C
Q psy7036 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMK-TTPIGTNKYLVALELDDV-----I 77 (254)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~-----~ 77 (254)
..+.+|+|+..|.+..+..|++++|.|.+.|.|.+.++|||+|+..........+ ....+ +|.+..+ .
T Consensus 27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~g------sLf~l~~ahg~~a 100 (1281)
T KOG4222|consen 27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDG------SLFLLRLAHGKKA 100 (1281)
T ss_pred cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCc------cEEEEecccCCcc
Confidence 3467899999999999999999999999999999999999999754332221111 11222 2332221 2
Q ss_pred CCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc
Q psy7036 78 ETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE 155 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~ 155 (254)
..|.|.|+|++.|..|.. .....|.+.. .+..+...+..+....|+.+.|.|. ..+.|.+.+.|.|+|+.+..
T Consensus 101 ~~d~G~y~cvasn~~g~avSr~a~L~vav-----lrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~ 175 (1281)
T KOG4222|consen 101 GHDHGVYSCVASNRLGEAVSRGASLIVAV-----LRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDH 175 (1281)
T ss_pred cCCCceeEeeecCccceeeecCceEEEEE-----echhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccc
Confidence 338999999999999874 3344555432 2233444455567778999999999 56788999999999999885
Q ss_pred CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCCCCeeecCCccccccCC
Q psy7036 156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234 (254)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g 234 (254)
...........| .|.|.+++.+|+|.|.|.+.|..|.. +....+.|+. +|.|...|....+..|
T Consensus 176 ~~~~~~~lisgG-----~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e----------~P~f~~rp~~~~v~~g 240 (1281)
T KOG4222|consen 176 YDVPIIALISGG-----NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQE----------KPWFWKRPKDLAVLVG 240 (1281)
T ss_pred ccceeEEEecCC-----cEEEeccccCCCceeeeeecccccccccccceeeecc----------CCccccccccceeecc
Confidence 555555455555 69999999999999999999999965 5567778875 7889999999999999
Q ss_pred CCcEEEEEEEeccCCCceeC
Q psy7036 235 LNDIVIECRLVGEPEPTISW 254 (254)
Q Consensus 235 ~~~~~l~C~~~~~p~p~~~W 254 (254)
. .+.+.|.+.|+|.|.+.|
T Consensus 241 ~-~~~f~c~v~GdP~P~Vrw 259 (1281)
T KOG4222|consen 241 A-AAEFDCRVGGDPQPTVRW 259 (1281)
T ss_pred c-ccccccccCCCCCCceee
Confidence 9 899999999999999988
No 7
>KOG4222|consensus
Probab=99.94 E-value=5.7e-26 Score=183.95 Aligned_cols=216 Identities=27% Similarity=0.500 Sum_probs=178.4
Q ss_pred CeeEeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
-.|.+.|..+.+..|+.+.|.|.- .+.|.+.+.|.|+|+.+.....-.......+ .|.|.+++.+|+|.|.|+
T Consensus 132 ddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG------~LlIsnvrksD~GtY~CV 205 (1281)
T KOG4222|consen 132 DDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG------NLLISNVRKSDEGTYACV 205 (1281)
T ss_pred hhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC------cEEEeccccCCCceeeee
Confidence 346677888888999999999986 6688999999999998873322222222222 699999999999999999
Q ss_pred EEcCCCce-EEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC
Q psy7036 88 AKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166 (254)
Q Consensus 88 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 166 (254)
+.|..|.. +...+|.|. .+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+.+..+.... ..+..+
T Consensus 206 atNmvG~ReS~~A~lsv~------e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r---y~i~~d 276 (1281)
T KOG4222|consen 206 ATNMVGERESIPARLSVQ------EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR---YSILDD 276 (1281)
T ss_pred ecccccccccccceeeec------cCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccc---eeeeec
Confidence 99999874 456788887 56777778888888899999999999999999999999776664332 222223
Q ss_pred CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec
Q psy7036 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246 (254)
Q Consensus 167 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~ 246 (254)
.. +|.|.+++..|.|.|.|.+.|..|.......+.|+. +|.|...|....+..|+ .++|.|.+.|
T Consensus 277 ~q----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a----------pP~f~kkp~dq~v~lg~-~vt~pc~~~g 341 (1281)
T KOG4222|consen 277 TQ----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA----------PPSFGKKPRDQKVALGG-TVTFPCETLG 341 (1281)
T ss_pred cc----cccccccCCCcccceeeeccccccccccccceEEec----------CcccccccCccccccCc-eEEeeeecCC
Confidence 22 799999999999999999999999998888888986 78899999999999999 9999999999
Q ss_pred cCCCceeC
Q psy7036 247 EPEPTISW 254 (254)
Q Consensus 247 ~p~p~~~W 254 (254)
+|.|.+.|
T Consensus 342 nP~PavfW 349 (1281)
T KOG4222|consen 342 NPPPAVFW 349 (1281)
T ss_pred CCCcceEE
Confidence 99999988
No 8
>KOG4194|consensus
Probab=99.94 E-value=2.4e-25 Score=170.35 Aligned_cols=189 Identities=24% Similarity=0.415 Sum_probs=152.0
Q ss_pred CCCCCCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEE-eeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ-LSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81 (254)
Q Consensus 3 ~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 81 (254)
++++..|.|+..|.+..+..|+.+.|.|.+.|.|.|++.|.|+|.. .+.....++...++.. .+.|.|++.+|.
T Consensus 607 ltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd-----~f~Itnvk~eD~ 681 (873)
T KOG4194|consen 607 LTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD-----VFFITNVKIEDQ 681 (873)
T ss_pred EEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC-----EEEEeccccccc
Confidence 4677899999999999999999999999999999999999998875 4443334444444433 799999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcce
Q psy7036 82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHK 160 (254)
Q Consensus 82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~ 160 (254)
|.|+|.+.|..|..++.+++.|.+.+ .+........+..|+.+.|.|.+.+.|. |.+.|+|+++++....+..
T Consensus 682 GiYtC~A~n~AG~isanAtL~V~e~p------~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~ 755 (873)
T KOG4194|consen 682 GIYTCTAQNVAGQISANATLTVLETP------SFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT 755 (873)
T ss_pred ceeEEeeeccccceeeceEEEEecCC------cccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc
Confidence 99999999999999999999998633 3333445667778999999999999887 8999999998876555433
Q ss_pred EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036 161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208 (254)
Q Consensus 161 ~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~ 208 (254)
+.. .+. -|.+.+...+|+|.|+|...+..|.....+.+.+..
T Consensus 756 f~d-~dQ-----llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 756 FPD-GDQ-----LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred CCC-CCe-----EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 321 121 688888889999999999999999877766665553
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.93 E-value=9.5e-24 Score=149.40 Aligned_cols=163 Identities=19% Similarity=0.269 Sum_probs=115.5
Q ss_pred CCCceeecCCCeEEEEEEEeeC-----------CCCceEEEeCCEEe--eeC-Ccc--e-EEEeecCCcceEEEEEEecc
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCN-----------PKPDIVWFRGETQL--SED-TRT--V-MKTTPIGTNKYLVALELDDV 76 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~--~~~-~~~--~-~~~~~~~~~~~~~~l~i~~~ 76 (254)
....+.+.+|++|.|.|.+.+. ..+.+.|+|++... ... .+. . ......+ .....|+|.++
T Consensus 28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~--~r~~~L~I~~v 105 (227)
T PHA02826 28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG--DRSENLWIGNV 105 (227)
T ss_pred CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee--cCCCeEEECCC
Confidence 3456788999999999998653 34589999988642 111 110 0 0000000 01227999999
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-----eCCCCeEEEEECCE
Q psy7036 77 IETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-----ADPAPTVIWSHSGV 151 (254)
Q Consensus 77 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~~~~~~W~~~~~ 151 (254)
+.+|+|.|+|.+.|..+.....+.|.|.. ++ ....+.+|+.+.|.|.+. +.|.|.+.|+|++.
T Consensus 106 ~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~ 173 (227)
T PHA02826 106 INIDEGIYICTISSGNICEESTIRLTFDS------GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGN 173 (227)
T ss_pred ChHHCEEEEEEEEECCcceEEEEEEEEec------CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCE
Confidence 99999999999999888877788887742 11 123456799999999975 34578999999999
Q ss_pred ecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 152 QVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
.+...... ....++ ..|.|.+++.+|+|.|+|.|.....
T Consensus 174 ~l~~~~r~--~~~~~~----~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 174 IVLYTDRI--QLRNNN----STLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred ECCCCCCE--EEeCCC----CEEEECcCCHHhCEEEEEEEEEeEC
Confidence 98754432 222222 1799999999999999999998653
No 10
>KOG4221|consensus
Probab=99.92 E-value=7.6e-24 Score=172.79 Aligned_cols=210 Identities=23% Similarity=0.421 Sum_probs=163.1
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
|...|....+.+|+++.|.|.+.+.|.|.|.|.||+..+..+. .++...... .|.|.+++..|+|.|+|.+.|
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g~~------slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVGGS------SLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEeccc------ceEEeccccccCceEEEEecC
Confidence 6778888899999999999999999999999999999988765 334332222 799999999999999999999
Q ss_pred CCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036 91 KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170 (254)
Q Consensus 91 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
..-...+...|.|. .+|.+...+......++.++.|.|.+.+.|.+.+.|+|||..+..++.+++ ..++
T Consensus 313 ~~D~idasaev~V~------a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki--~~~~--- 381 (1381)
T KOG4221|consen 313 TNDSIDASAEVTVL------APPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI--VGGG--- 381 (1381)
T ss_pred CCcccccceEEEEE------cCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe--cCCC---
Confidence 66666677777886 578888888888888899999999999999999999999998877555443 3333
Q ss_pred eeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEe
Q psy7036 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~ 245 (254)
.|.|..+-..|.|.|.|.++|..|.+.....+.+...... ...+.+...|..+.+..-+ ...+.|...
T Consensus 382 --~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~----~~s~~~~sap~~lv~~~~~-srfi~~tw~ 449 (1381)
T KOG4221|consen 382 --NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPAS----ASSDLLPSAPRDLVANLVS-SRFIQLTWR 449 (1381)
T ss_pred --CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcc----cccCccccCCcceeccccc-ceeEEEeec
Confidence 3777888889999999999999999888777755432111 1223444445555455455 667777665
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.90 E-value=2.7e-21 Score=145.51 Aligned_cols=175 Identities=22% Similarity=0.324 Sum_probs=116.9
Q ss_pred CeeEeCCCceeecCCCeEEEEEEE-----eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQL-----LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
|.+...+....+.+|..+.|.|.. .+.+.+.++|++++. +. ..++ ..... ..|.|.+++.+|+|.
T Consensus 122 ~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~--~~~~~------~~L~i~~v~~~d~G~ 191 (326)
T PHA02785 122 SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRL--KQRTP------GIITIEDVRKNDAGY 191 (326)
T ss_pred CccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-Ccce--EecCC------CeEEEeecChhhCeE
Confidence 333333344557799999999972 356888999998653 22 1221 11111 179999999999999
Q ss_pred EEEEEEcCCCceEE----EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEecccC
Q psy7036 84 YKVKAKNKMGEVAA----SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQVKED 156 (254)
Q Consensus 84 Y~C~~~~~~~~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~~ 156 (254)
|+|.+.|..+.... .+.|.|... ..+|.+ ..+....+..|+.+.|.|.+.+.|. +.+.|++||..+...
T Consensus 192 Y~C~~~n~~g~~~~~~t~~v~l~V~~~---~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~ 267 (326)
T PHA02785 192 YTCVLKYIYGDKTYNVTRIVKLEVRDR---IIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED 267 (326)
T ss_pred EEEEEEeccCCEEEeEEEEEEEEEecc---CCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence 99999998776432 334444321 133332 3345566778999999999998876 479999999987543
Q ss_pred Cc---ceEEEcCC------CCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 157 KR---HKFSIDKD------GHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 157 ~~---~~~~~~~~------~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.. .++..... .......|.|.+++.+|.|.|+|.|.|..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 21 12222111 1112457999999999999999999998743
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.85 E-value=5.5e-20 Score=113.77 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=80.8
Q ss_pred CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA 88 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 88 (254)
|.|...|+...+..|+++.|.|.+.|.|.+.+.|+|+|..+....++.+.... ..+.|.|.++...|+|.|+|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecC-----CeeEEEECCCChhhCEEEEEEE
Confidence 78899999999999999999999999999999999999999766554443221 2238999999999999999999
Q ss_pred EcCCCceEEEEEEEEecc
Q psy7036 89 KNKMGEVAASINLNFSRE 106 (254)
Q Consensus 89 ~~~~~~~~~~~~l~v~~~ 106 (254)
.|..|.....+.|.|.+.
T Consensus 76 ~N~~G~~~~~~~l~V~~~ 93 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDK 93 (98)
T ss_pred EcCCCceeEEEEEEEecC
Confidence 999999999999999753
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.81 E-value=3.4e-19 Score=108.17 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=74.1
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+|.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+....+... .+ ..|.|.+++.+|+|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~-----~~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SG-----AVLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CC-----CEEEECcCChhhCEEEEEE
Confidence 58899999999999999999999999999999999999887654322211 11 1699999999999999999
Q ss_pred EEcCCCceEEEEEEEE
Q psy7036 88 AKNKMGEVAASINLNF 103 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~v 103 (254)
+.|..|.....+.|.|
T Consensus 72 A~N~~G~~~~~~~l~V 87 (88)
T cd05851 72 AENIKGKDKHQARVYV 87 (88)
T ss_pred EEcCCCceEEEEEEEE
Confidence 9999999888888776
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.80 E-value=2.3e-18 Score=105.75 Aligned_cols=90 Identities=26% Similarity=0.495 Sum_probs=75.9
Q ss_pred CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
.+|.|...|....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+....++.+... ...+.|.|.++...|+|.|+|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C 76 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-----EYKSTFEISKVQMSDEGNYTV 76 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-----CCeeEEEECCCCcccCEeEEE
Confidence 578999999999999999999999999999999999999998876555444321 122489999999999999999
Q ss_pred EEEcCCCceEEEEEE
Q psy7036 87 KAKNKMGEVAASINL 101 (254)
Q Consensus 87 ~~~~~~~~~~~~~~l 101 (254)
.+.|..|.....+.|
T Consensus 77 ~a~N~~G~~~~~~~l 91 (92)
T cd05747 77 VVENSEGKQEAQFTL 91 (92)
T ss_pred EEEcCCCCEeEEEEe
Confidence 999999987776655
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.78 E-value=6.2e-18 Score=103.89 Aligned_cols=90 Identities=32% Similarity=0.601 Sum_probs=79.5
Q ss_pred CeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA 88 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 88 (254)
|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+..+.... ..+.|.|.++..+|+|.|+|.+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEE
Confidence 78899999999999999999999999999999999999999987776665433 3448999999999999999999
Q ss_pred EcCCCceEEEEEEEE
Q psy7036 89 KNKMGEVAASINLNF 103 (254)
Q Consensus 89 ~~~~~~~~~~~~l~v 103 (254)
.|..|.....+.|.|
T Consensus 76 ~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 76 SNSSGEATASVNLTV 90 (90)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEC
Confidence 999998888887765
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.78 E-value=1.7e-17 Score=102.67 Aligned_cols=91 Identities=20% Similarity=0.361 Sum_probs=75.1
Q ss_pred cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
+...+....+..|+.+.|.|.+.|.|++.+.|+|++..+....+..+...... +.|.|.++..+|+|.|+|.|.|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~----s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENS----SKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCe----eEEEECCCChhhCEEEEEEEEcC
Confidence 34455667888999999999999999999999999999875554433322222 48999999999999999999999
Q ss_pred CCcceEEEEEEEecC
Q psy7036 195 LGESNATISLNFDSD 209 (254)
Q Consensus 195 ~~~~~~~~~~~v~~~ 209 (254)
.|....++.|.|...
T Consensus 79 ~G~~~~~~~l~V~~~ 93 (98)
T cd05762 79 LGSRQAQVNLTVVDK 93 (98)
T ss_pred CCceeEEEEEEEecC
Confidence 999999999988763
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=1.4e-17 Score=103.08 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=70.8
Q ss_pred CceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
....+.+|+++.|.|.+.| .|.|.+.|+|||..+.....................|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567899999999999999 899999999999998754433222211112234568999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy7036 95 VAASINLNFS 104 (254)
Q Consensus 95 ~~~~~~l~v~ 104 (254)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888774
No 18
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.76 E-value=9.2e-18 Score=101.38 Aligned_cols=84 Identities=27% Similarity=0.530 Sum_probs=71.3
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+....+.... .+ .|.|.+++..|+|.|+|.+.|
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---~~------~L~i~~~~~~D~G~Y~C~a~N 72 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---AG------DLRITKLSLSDSGMYQCVAEN 72 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---CC------EEEEeeCCHHHCEEEEEEEEC
Confidence 566788889999999999999999999999999999988665443321 11 699999999999999999999
Q ss_pred CCCceEEEEEEEE
Q psy7036 91 KMGEVAASINLNF 103 (254)
Q Consensus 91 ~~~~~~~~~~l~v 103 (254)
..|....++.|.|
T Consensus 73 ~~G~~~~~~~l~V 85 (85)
T cd05728 73 KHGTIYASAELAV 85 (85)
T ss_pred CCCeEEEEEEEEC
Confidence 9999888887764
No 19
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.76 E-value=2.2e-17 Score=101.37 Aligned_cols=86 Identities=22% Similarity=0.465 Sum_probs=70.3
Q ss_pred CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
.|..+.+.+|+++.|.|.+.|.|.|.+.|+|++..+....++.+..... ....|.|.+++..|+|.|+|.+.|..|
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQG----KYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCC----CEEEEEEccCChhhCEEEEEEEEECCC
Confidence 4556788999999999999999999999999999987665554432211 123799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy7036 94 EVAASINLNF 103 (254)
Q Consensus 94 ~~~~~~~l~v 103 (254)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 9888777654
No 20
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.75 E-value=3.9e-17 Score=99.55 Aligned_cols=87 Identities=20% Similarity=0.324 Sum_probs=71.9
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+|.+...|....+.+|+++.|.|.+.|.|.+.++|+|++..+....... ... ..|.|.+++.+|+|.|+|.
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~~------~~L~i~~v~~~D~G~Y~C~ 71 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---MSG------AVLKIPNIQFEDEGTYECE 71 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---EeC------CEEEECCCCcccCEEEEEE
Confidence 4667788888899999999999999999999999999887654332211 111 2799999999999999999
Q ss_pred EEcCCCceEEEEEEEE
Q psy7036 88 AKNKMGEVAASINLNF 103 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~v 103 (254)
+.|..|.......|.|
T Consensus 72 a~N~~G~~~~~~~l~V 87 (88)
T cd04968 72 AENIKGKDTHQGRIYV 87 (88)
T ss_pred EEECCCcEEEEEEEEE
Confidence 9999999888888776
No 21
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.75 E-value=4.8e-17 Score=100.89 Aligned_cols=93 Identities=22% Similarity=0.376 Sum_probs=71.8
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc---ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR---TVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+..... .++.... ....+.|.|.+++..|+|.|
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~---~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS---HARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc---CccEEEEEEecCccCcCEEE
Confidence 57888777776677789999999999999999999999877643211 1111111 12234799999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy7036 85 KVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 85 ~C~~~~~~~~~~~~~~l~v 103 (254)
+|.+.|..|.....+.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999888887764
No 22
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.74 E-value=5.7e-17 Score=97.82 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=67.1
Q ss_pred ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036 17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 95 (254)
.+.+.+|+++.|.|.+.|.|.|.+.|+|++..+... .++.+... . ..+.|.|.++...|+|.|+|.+.|..|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~--~---~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY--K---DLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc--C---CeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 457889999999999999999999999999988653 23333221 1 13479999999999999999999999998
Q ss_pred EEEEEEEE
Q psy7036 96 AASINLNF 103 (254)
Q Consensus 96 ~~~~~l~v 103 (254)
...+.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 88887764
No 23
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.74 E-value=9e-17 Score=98.28 Aligned_cols=87 Identities=16% Similarity=0.318 Sum_probs=69.2
Q ss_pred EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
...|+...+.+|+.+.|.|.+.|.|.|.+.|++++..+.......... ......|.|.+++..|.|.|+|.+.|.
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLET-----TVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEe-----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence 456667779999999999999999999999999998875433321111 112337999999999999999999999
Q ss_pred CCceEEEEEEEE
Q psy7036 92 MGEVAASINLNF 103 (254)
Q Consensus 92 ~~~~~~~~~l~v 103 (254)
.|.....+.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 999888877764
No 24
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.73 E-value=1.8e-16 Score=96.16 Aligned_cols=82 Identities=17% Similarity=0.323 Sum_probs=66.5
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
|+.++|.|.+.|.|.+.+.|+|++..+.... ++.+... ..+....+.|.|.++...|+|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 7899999999999999999999998875432 3333221 1223445689999999999999999999999999999999
Q ss_pred EEec
Q psy7036 102 NFSR 105 (254)
Q Consensus 102 ~v~~ 105 (254)
.|.+
T Consensus 80 ~V~~ 83 (88)
T cd05735 80 TVQE 83 (88)
T ss_pred EEeC
Confidence 9874
No 25
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.73 E-value=4e-17 Score=95.94 Aligned_cols=74 Identities=32% Similarity=0.556 Sum_probs=61.9
Q ss_pred CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
+|+++.|.|.+.|.|.|.++|+|++..+....+..+ ...+ .|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~~~~------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV--LSSG------TLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE--ccCC------eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 689999999999999999999999998865443322 1111 79999999999999999999999998888877
Q ss_pred EE
Q psy7036 102 NF 103 (254)
Q Consensus 102 ~v 103 (254)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 64
No 26
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.73 E-value=1.7e-16 Score=98.24 Aligned_cols=91 Identities=21% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCeeEeCC--CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 8 APSFTQKP--QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 8 ~p~~~~~~--~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
+|.|...+ ....+..|+++.|.|.+.|.|.+.+.|+++|..+.... ..+.....+ ..|.|.+++..|+|.|+
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~-----~~L~I~~v~~~D~G~Y~ 74 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDG-----SEMTILDVDKLDEAEYT 74 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCC-----CEEEECCCChhhCEEEE
Confidence 35555443 33468899999999999999999999999999886541 122222111 26999999999999999
Q ss_pred EEEEcCCCceEEEEEEEEe
Q psy7036 86 VKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 86 C~~~~~~~~~~~~~~l~v~ 104 (254)
|.+.|..|.....+.|.|.
T Consensus 75 C~a~N~~G~~~~~~~L~V~ 93 (95)
T cd05730 75 CIAENKAGEQEAEIHLKVF 93 (95)
T ss_pred EEEEcCCCeEEEEEEEEEE
Confidence 9999999998888888875
No 27
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.73 E-value=1.8e-16 Score=97.35 Aligned_cols=89 Identities=27% Similarity=0.456 Sum_probs=68.4
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEe-CCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFR-GETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+...|....+.+|++++|.|.+.|.|. +.++|++ ++..+.. ..++.+. .. ....+.|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~--~~--~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV--RN--DDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE--eC--CCCceEEEEeccChhhCEEEEEE
Confidence 345677778999999999999999985 7999998 7776654 2232222 11 11234899999999999999999
Q ss_pred EEcCC-CceEEEEEEEE
Q psy7036 88 AKNKM-GEVAASINLNF 103 (254)
Q Consensus 88 ~~~~~-~~~~~~~~l~v 103 (254)
|.|.. |....++.|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 99986 77888887776
No 28
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.73 E-value=1.2e-16 Score=99.19 Aligned_cols=92 Identities=27% Similarity=0.439 Sum_probs=70.4
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc---ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR---TVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
+|.|. .+....+.+|+++.|.|.+.|.|.+.+.|++++..+..... .++... .....+.|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR---GHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe---CCccEEEEEECcCCcCcCEEe
Confidence 57775 45567889999999999999999999999999866543211 112111 122334899999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy7036 85 KVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 85 ~C~~~~~~~~~~~~~~l~v 103 (254)
+|.+.|..|....++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999887777654
No 29
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.73 E-value=2.5e-16 Score=99.46 Aligned_cols=99 Identities=25% Similarity=0.342 Sum_probs=74.6
Q ss_pred CCCCCeeEeCCCceee----cCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccC-C
Q psy7036 5 EDFAPSFTQKPQLRQE----DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVI-E 78 (254)
Q Consensus 5 ~~~~p~~~~~~~~~~v----~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~ 78 (254)
+.++|.|...|....+ ..|..++|.|.+.|.|.+.+.|+|+|..+.... ++...... ......+.|.|.+++ .
T Consensus 1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAA 79 (109)
T ss_pred CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeec-cCccceeEEEECcCCcc
Confidence 3578888877764333 256799999999999999999999999886432 32222111 122223579999997 5
Q ss_pred CCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 79 TDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
.|.|.|+|.|.|..|.....+.|.|.
T Consensus 80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 80 LDYALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred CCCEEEEEEEEeCCccCcEEEEEEec
Confidence 99999999999999999999988886
No 30
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.72 E-value=1.4e-16 Score=99.00 Aligned_cols=92 Identities=23% Similarity=0.376 Sum_probs=68.7
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeC--CEEeeeCC---cceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDT---RTVMKTTPIGTNKYLVALELDDVIETDAG 82 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 82 (254)
+|.|.. +.+..+.+|++++|.|.+.|.|.|.+.|+++ +..+.... ..++..... .....|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~---~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ---HGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec---CCeeEEEEeeCCcCCCE
Confidence 577765 6678899999999999999999999999994 44443211 112222111 12237999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEE
Q psy7036 83 LYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 83 ~Y~C~~~~~~~~~~~~~~l~v 103 (254)
.|+|.+.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999887777754
No 31
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.72 E-value=6.6e-17 Score=94.18 Aligned_cols=73 Identities=30% Similarity=0.555 Sum_probs=61.6
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
|+++.|.|.+.|.|.+.++|+|++..+....++.+ ..++ +|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~--~~~g------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISI--WDDG------SLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEE--cCCC------EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 78899999999999999999999988765554433 2222 799999999999999999999999988888776
Q ss_pred E
Q psy7036 103 F 103 (254)
Q Consensus 103 v 103 (254)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 32
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.72 E-value=3.2e-16 Score=97.02 Aligned_cols=88 Identities=17% Similarity=0.326 Sum_probs=70.3
Q ss_pred CeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 120 SIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
....+..|+.+.|.|.+.+ .|+|.+.|+|+|..+............ ....+.+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567888999999999999 889999999999998754332222211 12234468999999999999999999999999
Q ss_pred ceEEEEEEEe
Q psy7036 198 SNATISLNFD 207 (254)
Q Consensus 198 ~~~~~~~~v~ 207 (254)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888775
No 33
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=1.3e-16 Score=93.25 Aligned_cols=74 Identities=28% Similarity=0.478 Sum_probs=59.5
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
|.|.|.+.|.|.|.+.|+|++..+... .++.+... + .+..+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~--~--~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQD--N--SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEc--C--CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999988743 33333221 1 12237999999999999999999999999988888765
No 34
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.72 E-value=2e-16 Score=93.45 Aligned_cols=74 Identities=24% Similarity=0.447 Sum_probs=60.9
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
|+++.|.|.+.|.|.|.++|+|+|..+...... +... .. ..|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SS------GALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-eC------CEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 789999999999999999999999987653221 2211 11 179999999999999999999999998888888
Q ss_pred EE
Q psy7036 102 NF 103 (254)
Q Consensus 102 ~v 103 (254)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 76
No 35
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.72 E-value=1.8e-16 Score=93.43 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=61.1
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
|+++.|.|.+.|.|.|.++|+|+|..+........... .+. .|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV-DGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe-cCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 78899999999999999999999998864322211111 111 689999999999999999999999999988888
Q ss_pred E
Q psy7036 103 F 103 (254)
Q Consensus 103 v 103 (254)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 7
No 36
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.72 E-value=2.5e-16 Score=95.61 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=69.8
Q ss_pred CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 192 (254)
|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+.... ++... ++ .|.|.++..+|.|.|+|.|.
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~--~~~~~-~~-----~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA--EISMS-GA-----VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC--EEecC-CC-----EEEECcCChhhCEEEEEEEE
Confidence 455555667778899999999999999999999999987765432 22221 22 79999999999999999999
Q ss_pred cCCCcceEEEEEEE
Q psy7036 193 NELGESNATISLNF 206 (254)
Q Consensus 193 ~~~~~~~~~~~~~v 206 (254)
|..|.......|.|
T Consensus 74 N~~G~~~~~~~l~V 87 (88)
T cd05851 74 NIKGKDKHQARVYV 87 (88)
T ss_pred cCCCceEEEEEEEE
Confidence 99999888887776
No 37
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.71 E-value=3e-16 Score=97.34 Aligned_cols=88 Identities=22% Similarity=0.370 Sum_probs=69.6
Q ss_pred ceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEee-cCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036 17 LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 95 (254)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++............ .....+.+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 557889999999999999999999999999998765433222110 0112334589999999999999999999999998
Q ss_pred EEEEEEEEe
Q psy7036 96 AASINLNFS 104 (254)
Q Consensus 96 ~~~~~l~v~ 104 (254)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 38
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.71 E-value=2.8e-16 Score=96.24 Aligned_cols=86 Identities=24% Similarity=0.574 Sum_probs=69.3
Q ss_pred CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
.|..+.+.+|+++.|.|.+.+.|.+.+.||+++..+....++...... + . ...|.|.+++.+|+|.|+|.+.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~-~--~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-G-K--YASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-C-C--EEEEEECCCChhhCEEEEEEEEeCCC
Confidence 345678899999999999999999999999999988765554443321 1 1 23799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy7036 94 EVAASINLNF 103 (254)
Q Consensus 94 ~~~~~~~l~v 103 (254)
.....+.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 9888777654
No 39
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.71 E-value=4.5e-16 Score=95.53 Aligned_cols=84 Identities=26% Similarity=0.495 Sum_probs=68.7
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
..+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.......+....... +.|.|.++..+|+|.|+|.|.|..|...
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKY---ASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCE---EEEEEccCChhhCEEEEEEEEECCCcce
Confidence 3567888999999999999999999999999988765554443332211 3799999999999999999999999988
Q ss_pred EEEEEEE
Q psy7036 200 ATISLNF 206 (254)
Q Consensus 200 ~~~~~~v 206 (254)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8877654
No 40
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.70 E-value=5.8e-16 Score=97.11 Aligned_cols=95 Identities=23% Similarity=0.461 Sum_probs=68.5
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCC---cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT---RTVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
+|.|...|....+.+|+++.|.|.+.|.|.+.+.|+|+|..+.... .........+ ......+.+.+++..|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG-SLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCC-cEEEEEeeccCCCcCcCEEE
Confidence 5899999999999999999999999999999999999999876521 1111111111 11111122233478999999
Q ss_pred EEEEEcCCCc-eEEEEEEEE
Q psy7036 85 KVKAKNKMGE-VAASINLNF 103 (254)
Q Consensus 85 ~C~~~~~~~~-~~~~~~l~v 103 (254)
+|.+.|..|. ....+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 556666665
No 41
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.70 E-value=1.1e-15 Score=92.78 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=66.9
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
|+.+.|.|.+.|.|++.+.|++++..+.... +..+.....+....+.|.|.++..+|.|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 6889999999999999999999998875443 222222233445556899999999999999999999999999999988
Q ss_pred Eec
Q psy7036 206 FDS 208 (254)
Q Consensus 206 v~~ 208 (254)
|..
T Consensus 81 V~~ 83 (88)
T cd05735 81 VQE 83 (88)
T ss_pred EeC
Confidence 875
No 42
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.70 E-value=3.8e-16 Score=91.51 Aligned_cols=76 Identities=28% Similarity=0.482 Sum_probs=59.9
Q ss_pred EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
.|.|.+.|.|.|.++|||||..+..+.+............+.+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3679999999999999999999976655433322222333455899999999999999999999999887766554
No 43
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.70 E-value=2e-16 Score=89.86 Aligned_cols=66 Identities=21% Similarity=0.440 Sum_probs=55.4
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
++|.|.+.|.|.|.++|||||..+..... ...|.|.++..+|+|.|+|.+.|..|....+..+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-------------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHS-------------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCC-------------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999998863211 1279999999999999999999999987777776653
No 44
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.70 E-value=2.9e-16 Score=91.92 Aligned_cols=75 Identities=27% Similarity=0.474 Sum_probs=59.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
|+|.|.+.|.|.|.+.|+|++..+..... ++.....+ .....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDN--CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcC--CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999998864321 22222221 12336999999999999999999999999988888765
No 45
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.69 E-value=8.5e-16 Score=93.41 Aligned_cols=87 Identities=21% Similarity=0.418 Sum_probs=66.5
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 89 (254)
+...|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....+..+. ..+ ..+.|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~--~~g---~~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ--KEG---VRSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE--eCC---CeeEEEEecCChHHCEEEEEEEE
Confidence 456777888999999999999999888 899998 46666555444332 222 12379999999999999999999
Q ss_pred cCCCce-EEEEEEEE
Q psy7036 90 NKMGEV-AASINLNF 103 (254)
Q Consensus 90 ~~~~~~-~~~~~l~v 103 (254)
|..|.. ..++.|.+
T Consensus 77 N~~G~~~~~~i~l~~ 91 (92)
T cd05866 77 DAKGQTQEATVVLEI 91 (92)
T ss_pred cCCCcEEEEEEEEEE
Confidence 999874 44555543
No 46
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.69 E-value=2.7e-16 Score=93.47 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=63.6
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
|+...+.+|+.+.|.|.+.+. .+.+.|+|+|..+....+..+. +. .|.|.+++..|+|.|+|.+.|..|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~-----~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GE-----EVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CC-----EEEECCCChhhCEEEEEEEeCCCCc
Confidence 456778999999999999875 5689999999988765544332 11 6999999999999999999998888
Q ss_pred eEEEEEEEE
Q psy7036 95 VAASINLNF 103 (254)
Q Consensus 95 ~~~~~~l~v 103 (254)
....+.|.|
T Consensus 71 ~~~~~~v~V 79 (79)
T cd04973 71 DTTYFSVNV 79 (79)
T ss_pred ccEEEEEeC
Confidence 766666553
No 47
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.69 E-value=1.8e-15 Score=91.26 Aligned_cols=82 Identities=30% Similarity=0.492 Sum_probs=66.2
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+.... +..+....+ .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 4567789999999999999999999999999886543 222222211 24799999999999999999999999988
Q ss_pred EEEEEEE
Q psy7036 200 ATISLNF 206 (254)
Q Consensus 200 ~~~~~~v 206 (254)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 8877754
No 48
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.69 E-value=1.4e-15 Score=93.41 Aligned_cols=90 Identities=31% Similarity=0.600 Sum_probs=72.8
Q ss_pred CCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190 (254)
Q Consensus 111 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 190 (254)
.+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....+..+..... .+.|.|.++..+|.|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence 35666777778889999999999999999999999999998876544433332211 24899999999999999999
Q ss_pred EEcCCCcceEEEEE
Q psy7036 191 AKNELGESNATISL 204 (254)
Q Consensus 191 ~~~~~~~~~~~~~~ 204 (254)
|.|..|....++.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999988777665
No 49
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.68 E-value=1.6e-15 Score=93.18 Aligned_cols=81 Identities=25% Similarity=0.479 Sum_probs=64.1
Q ss_pred CeeEeCCCceeec---CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036 9 PSFTQKPQLRQED---EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY 84 (254)
Q Consensus 9 p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 84 (254)
|.|+..|.+..+. +|++++|.|.+.|.|.|.++|+|+|..+......++... ++ .|.|.++. ..|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g------~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG------NLIISNPSEVKDSGRY 74 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC------eEEEccCCccCcCEEE
Confidence 7888888887654 478999999999999999999999998865433333221 11 68898875 6999999
Q ss_pred EEEEEcCCCceE
Q psy7036 85 KVKAKNKMGEVA 96 (254)
Q Consensus 85 ~C~~~~~~~~~~ 96 (254)
+|.|.|..|...
T Consensus 75 ~C~A~N~~G~~~ 86 (94)
T cd05848 75 QCLATNSIGSIL 86 (94)
T ss_pred EEEEEcCCCeEE
Confidence 999999998754
No 50
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.68 E-value=8.8e-16 Score=89.72 Aligned_cols=74 Identities=32% Similarity=0.562 Sum_probs=58.7
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+... .+..+.....+. .+|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGR---VTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCc---EEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 478999999999999999999988643 222222222222 37999999999999999999999999988877754
No 51
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.68 E-value=7.8e-16 Score=90.56 Aligned_cols=74 Identities=26% Similarity=0.455 Sum_probs=60.3
Q ss_pred eEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 25 RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 25 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
.+.|.|.+.|.|.|.+.|+|+|..+....+..+.... ..+.|.|.++...|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3789999999999999999999998655544433221 2347999999999999999999999999888877764
No 52
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.68 E-value=2.6e-15 Score=92.31 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=64.3
Q ss_pred CeeEeCCCceeecCC---CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036 9 PSFTQKPQLRQEDEG---NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY 84 (254)
Q Consensus 9 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 84 (254)
|.|...|....+.+| ++++|.|.+.|.|.+.++|+++|..+......++... .+ .|.|.++. ..|+|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g------~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-AG------NLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-CC------eEEEccCCccCcCEEE
Confidence 788888988877665 5899999999999999999999998864433333221 11 68888765 6999999
Q ss_pred EEEEEcCCCceEE
Q psy7036 85 KVKAKNKMGEVAA 97 (254)
Q Consensus 85 ~C~~~~~~~~~~~ 97 (254)
+|.|.|..|...+
T Consensus 75 ~C~A~N~~G~~~s 87 (94)
T cd05850 75 QCLAINRCGTVVS 87 (94)
T ss_pred EEEEEcCcCcEEE
Confidence 9999999997543
No 53
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.68 E-value=1.3e-15 Score=92.32 Aligned_cols=81 Identities=21% Similarity=0.453 Sum_probs=64.8
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA 96 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 96 (254)
..+.+|+++.|.|.+.|.|.+.++|+|+|..+....+.. .... . ....|.|.++..+|+|.|+|.+.|..|...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR-N----QHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe-C----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 457899999999999999999999999999886543321 1111 1 123699999999999999999999999988
Q ss_pred EEEEEEE
Q psy7036 97 ASINLNF 103 (254)
Q Consensus 97 ~~~~l~v 103 (254)
..+.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 8887764
No 54
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.68 E-value=9.6e-16 Score=89.18 Aligned_cols=71 Identities=25% Similarity=0.515 Sum_probs=58.5
Q ss_pred eEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 25 RLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 25 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
++.|.|.+.|.|.|.++|+|++..+....++.+. ..+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~--~~~------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV--KEH------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE--ecC------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999988655443332 222 4888899999999999999999999888887764
No 55
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=1.9e-15 Score=89.32 Aligned_cols=74 Identities=23% Similarity=0.520 Sum_probs=60.8
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
|+.+.|.|.+.|.|.|.+.|++++..+...... +... .++ .|.|.+++.+|+|.|.|.|.|..|.......|.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV-SSG-----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe-eCC-----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 678999999999999999999999987654322 2222 222 799999999999999999999999988887776
Q ss_pred E
Q psy7036 206 F 206 (254)
Q Consensus 206 v 206 (254)
|
T Consensus 75 V 75 (76)
T cd05867 75 V 75 (76)
T ss_pred E
Confidence 5
No 56
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.67 E-value=7.6e-16 Score=90.49 Aligned_cols=74 Identities=30% Similarity=0.607 Sum_probs=61.7
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
+|+.+.|.|.+.|.|.|.+.|+|++..+..... .....++ .|.|.+++.+|.|.|+|.|.|..|....++.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~--~~~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRR--HLVLSSG-----TLRISRVALHDQGQYECQAVNIVGSQRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCC--eEEccCC-----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence 588999999999999999999999988764432 2222333 799999999999999999999999988887776
Q ss_pred E
Q psy7036 206 F 206 (254)
Q Consensus 206 v 206 (254)
|
T Consensus 74 V 74 (74)
T cd05745 74 V 74 (74)
T ss_pred C
Confidence 4
No 57
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.67 E-value=1.2e-15 Score=90.46 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=61.3
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
|+++.|.|.+.|.|.|.+.|+++|..+......... .... ..|.|.+++..|+|.|+|.+.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR-RVDG-----GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE-EccC-----CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 789999999999999999999999988654432111 1111 1799999999999999999999999988888887
Q ss_pred E
Q psy7036 103 F 103 (254)
Q Consensus 103 v 103 (254)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 6
No 58
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.67 E-value=1.5e-15 Score=89.51 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=60.7
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
|+.+.|.|.+.|.|.|.+.|+|++..+............++ .|.|.+++.+|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999999999999999999998854322211112222 6889999999999999999999999999888876
No 59
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.67 E-value=3.3e-15 Score=99.11 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCC--CeEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPA--PTVIWS 147 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~ 147 (254)
+|+|.+++..|+|.|.|.+.+..+.....+.|.|. .+|.+...+.......|..+.|.|.+.++++ +.+.|+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~------~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~ 75 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS------EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWT 75 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe------cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence 69999999999999999999888888888888886 4555544444333446888999999998644 479999
Q ss_pred ECCEeccc----CCcc---eEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 148 HSGVQVKE----DKRH---KFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 148 ~~~~~~~~----~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
+++..... .... ......++. ...+.|.+..-..++.+.|+|.+.+....
T Consensus 76 ~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 76 REPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred ECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 99854221 0111 122233332 44567888766656667999999886543
No 60
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=2e-15 Score=93.37 Aligned_cols=86 Identities=23% Similarity=0.454 Sum_probs=64.9
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEecc-----CCCCCeEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDV-----IETDAGLYK 85 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~ 85 (254)
|...|....+.+|+++.|.|.+.+.|.+.++|+|+|..+.............+ .+.|.++ +..|.|.|+
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~------~l~i~~v~~~~~~~~D~G~Y~ 75 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG------SLLITSVVHSKHNKPDEGFYQ 75 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC------eEEEeeeeccCCCCCcCEEEE
Confidence 56778888899999999999999999999999999998875443222222222 4556555 689999999
Q ss_pred EEEEcC-CCce-EEEEEEE
Q psy7036 86 VKAKNK-MGEV-AASINLN 102 (254)
Q Consensus 86 C~~~~~-~~~~-~~~~~l~ 102 (254)
|.+.|. .|.. ...+.|.
T Consensus 76 C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 76 CVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEEECCccCcEEEeeeEEe
Confidence 999999 8875 3455444
No 61
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.67 E-value=8.4e-16 Score=90.10 Aligned_cols=73 Identities=33% Similarity=0.614 Sum_probs=61.5
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
|+.+.|.|.+.|.|.+.++|+|++..+....+..+ ...+ .|.|.+++..|+|.|+|.+.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--~~~~------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI--WPDG------SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEE--CCCC------eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 78899999999999999999999998866554432 2111 699999999999999999999999988888776
Q ss_pred E
Q psy7036 103 F 103 (254)
Q Consensus 103 v 103 (254)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 62
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.67 E-value=1.7e-15 Score=93.97 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=68.9
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC--CCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK--DGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
...+..|+.+.|.|.+.|+|+|.+.|+|++..+............ ....+.+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456778999999999999999999999999998755432221111 112334689999999999999999999999999
Q ss_pred eEEEEEEEe
Q psy7036 199 NATISLNFD 207 (254)
Q Consensus 199 ~~~~~~~v~ 207 (254)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 63
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=1.6e-15 Score=88.32 Aligned_cols=73 Identities=37% Similarity=0.635 Sum_probs=61.3
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
|+.+.|.|.+.+.|.|.+.|+|++..+.... ++....++ .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~--r~~~~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNS--RISIWDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCC--CEEEcCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999998765443 34344444 7999999999999999999999999988887754
No 64
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.67 E-value=1.7e-15 Score=88.93 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=58.6
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
++|.|.+.|.|.|.+.|+|++..+... .++.+. ..+ .....|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~--~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLY--QDN--CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEE--EcC--CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999988643 233222 111 12236999999999999999999999999888887764
No 65
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.66 E-value=3e-15 Score=91.21 Aligned_cols=86 Identities=17% Similarity=0.366 Sum_probs=65.4
Q ss_pred CeeE--eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 9 PSFT--QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 9 p~~~--~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
|.+. ..+....+.+|++++|.|.+.|. .+.+.|+|++..+... + +.....+. .|.|.+++.+|+|.|+|
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~--~~~~~~~~-----~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-R--LQLSNDNR-----TLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-C--EEEeCCCC-----EEEECcCChhhCEEEEE
Confidence 5554 33455688999999999999999 9999999999887543 2 22221111 79999999999999999
Q ss_pred EEEcCCCceEE-EEEEEE
Q psy7036 87 KAKNKMGEVAA-SINLNF 103 (254)
Q Consensus 87 ~~~~~~~~~~~-~~~l~v 103 (254)
.+.|..|...+ .+.|.|
T Consensus 73 ~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 73 EASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEcCCCCEEeeeEEEEe
Confidence 99999997543 555554
No 66
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.66 E-value=5.2e-15 Score=91.58 Aligned_cols=82 Identities=28% Similarity=0.561 Sum_probs=67.2
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
...+..|+.+.|.|.+.|.|.|.+.|++++..+.... ..+....++ +.|.|.++..+|.|.|+|.|.|..|....
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-EKYSFNEDG----SEMTILDVDKLDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-CEEEEeCCC----CEEEECCCChhhCEEEEEEEEcCCCeEEE
Confidence 3467789999999999999999999999998876542 223333332 26999999999999999999999999888
Q ss_pred EEEEEEe
Q psy7036 201 TISLNFD 207 (254)
Q Consensus 201 ~~~~~v~ 207 (254)
++.|.|.
T Consensus 87 ~~~L~V~ 93 (95)
T cd05730 87 EIHLKVF 93 (95)
T ss_pred EEEEEEE
Confidence 8888875
No 67
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.65 E-value=3.9e-15 Score=88.43 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=58.9
Q ss_pred EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeec--CCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI--GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
.|.|.+.|.|.|.++|+|+|..+............. ......+.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 368999999999999999999997665433222211 1233445799999999999999999999999987776654
No 68
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.65 E-value=3.3e-15 Score=91.66 Aligned_cols=88 Identities=35% Similarity=0.603 Sum_probs=73.4
Q ss_pred cccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.......+.... ..+.|.|.++..+|.|.|+|.+.|.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEEEET
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEEEEC
Confidence 344456778889999999999999999999999999999876665554443 2248999999999999999999999
Q ss_pred CCcceEEEEEEE
Q psy7036 195 LGESNATISLNF 206 (254)
Q Consensus 195 ~~~~~~~~~~~v 206 (254)
.|....++.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 998888877764
No 69
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.65 E-value=1.2e-15 Score=88.62 Aligned_cols=70 Identities=29% Similarity=0.533 Sum_probs=57.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
+.|.|.+.|.|.|.+.|+|+|..+....+... .+ ..|.|.+++..|+|.|+|.+.|..|.....+.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~-----~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SG-----HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CC-----CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47899999999999999999998876532211 11 279999999999999999999999987777777653
No 70
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.65 E-value=5.3e-15 Score=90.11 Aligned_cols=83 Identities=20% Similarity=0.367 Sum_probs=66.1
Q ss_pred ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .. ..++ .|.|.+++.+|+|.|.|.+.|..
T Consensus 5 ~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~--~~-~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAE--IS-MSGA-----VLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred EECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccE--EE-EeCC-----EEEECCCCcccCEEEEEEEEECC
Confidence 3344556677899999999999999999999998876543322 11 1222 79999999999999999999999
Q ss_pred CcceEEEEEEE
Q psy7036 196 GESNATISLNF 206 (254)
Q Consensus 196 ~~~~~~~~~~v 206 (254)
|....+..|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 99888877765
No 71
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.65 E-value=3.7e-15 Score=87.20 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=58.6
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+..... ++....++. ....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~-~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTD-RVSMHQDNC-GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCC-eEEEEEcCC-CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47899999999999999999998865332 233322211 1236999999999999999999999999988877754
No 72
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.64 E-value=8.9e-15 Score=89.56 Aligned_cols=84 Identities=27% Similarity=0.566 Sum_probs=67.9
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+............. . .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~-~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQG-K--YASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCC-C--EEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 45678899999999999999999999999998876554433333222 1 13799999999999999999999999998
Q ss_pred EEEEEEE
Q psy7036 200 ATISLNF 206 (254)
Q Consensus 200 ~~~~~~v 206 (254)
.++.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8887754
No 73
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.64 E-value=2.5e-15 Score=89.20 Aligned_cols=75 Identities=27% Similarity=0.364 Sum_probs=59.4
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 102 (254)
|+++.|.|.+.|.|.|.++|++++..+....++.+.. .. ....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS--EG---GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE--CC---CEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 7899999999999999999999998876554433321 11 223799999999999999999999999866555444
No 74
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=9.2e-15 Score=89.35 Aligned_cols=83 Identities=19% Similarity=0.383 Sum_probs=65.2
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
....+..|+.+.|.|.+.|.|.|.+.|++++..+............ ..+.|.|.++..+|.|.|+|.|.|..|...
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTV----DIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecC----CEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 3445788999999999999999999999999877543321111111 123799999999999999999999999988
Q ss_pred EEEEEEE
Q psy7036 200 ATISLNF 206 (254)
Q Consensus 200 ~~~~~~v 206 (254)
.++.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8877754
No 75
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.64 E-value=1.1e-14 Score=90.49 Aligned_cols=92 Identities=27% Similarity=0.413 Sum_probs=70.1
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCC-CCeE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIET-DAGL 83 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~-d~G~ 83 (254)
+|.+.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+.... ++.+..... .....+.|.|.++..+ |.|.
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~-~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS-PGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEECCcccccccee
Confidence 566654 566788999999999999999998 599999999886543 333332211 2334458999999984 4899
Q ss_pred EEEEEEcCCCceEEEEEE
Q psy7036 84 YKVKAKNKMGEVAASINL 101 (254)
Q Consensus 84 Y~C~~~~~~~~~~~~~~l 101 (254)
|.|.|.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999987776654
No 76
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.64 E-value=3.8e-15 Score=84.64 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=55.0
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
++|.|.+.|.|.|.+.|+|+|..+.... .+ ..|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~----~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQ----HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC--------Cc----CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4789999999999999999999885221 11 279999999999999999999999987777766653
No 77
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.64 E-value=3.7e-15 Score=85.82 Aligned_cols=68 Identities=22% Similarity=0.518 Sum_probs=53.9
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
|++++|.|.+.|.|.|.|+|+|++..+....+... + ...|.|.++ .|+|.|+|.+.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~----~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----G----RNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----C----ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 68899999999999999999999988755433211 1 116888886 48999999999999987776655
No 78
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.63 E-value=7.8e-15 Score=86.90 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=61.2
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
|+.+.|.|.+.|.|.|.+.|++++..+............++ .|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG-----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCC-----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 67899999999999999999999988765443211222222 7999999999999999999999999888887776
No 79
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.63 E-value=9.2e-15 Score=89.50 Aligned_cols=87 Identities=26% Similarity=0.466 Sum_probs=64.6
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 89 (254)
+.+.|....+.+|+++.|.|.+.|.|. .+.|++ ++..+....+..... .....+.|.|.+++.+|+|.|+|.+.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEE
Confidence 456777889999999999999999874 899998 566555433332221 12234489999999999999999999
Q ss_pred cCCCc-eEEEEEEE
Q psy7036 90 NKMGE-VAASINLN 102 (254)
Q Consensus 90 ~~~~~-~~~~~~l~ 102 (254)
|..|. ...++.|.
T Consensus 78 N~~g~~~~~sv~l~ 91 (92)
T cd04977 78 DAKGTESEATVNLK 91 (92)
T ss_pred cCCCCcceeEEEEE
Confidence 98654 45555554
No 80
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=7.7e-15 Score=86.31 Aligned_cols=73 Identities=36% Similarity=0.540 Sum_probs=59.6
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+.......+..... .+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 6899999999999999999999885554433333222 247999999999999999999999999888877754
No 81
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.63 E-value=8.3e-15 Score=85.22 Aligned_cols=71 Identities=31% Similarity=0.613 Sum_probs=57.8
Q ss_pred eEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 129 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
++.|.|.+.|.|.|.+.|+|++..+....... ...++ .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~--~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFK--IVKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEE--EEecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999998876544332 22233 5788899999999999999999999888887754
No 82
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=1.9e-15 Score=87.00 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=55.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
+.|.|.+.|.|.|.++|||||.++....+. . .+ ..|.|.++..+|+|.|+|.+.|..|......++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~----~-~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF----K-RG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE----c-cC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999998654321 1 11 16999999999999999999999997766665554
No 83
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=8e-15 Score=88.51 Aligned_cols=81 Identities=27% Similarity=0.553 Sum_probs=66.6
Q ss_pred CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+..... +... ++ .|.|.++..+|.|.|+|.|.|..|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~--~~~~-~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENR--IEVE-AG-----DLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCe--EEEe-CC-----EEEEeeCCHHHCEEEEEEEECCCCe
Confidence 44566788999999999999999999999999998764432 2222 22 7999999999999999999999999
Q ss_pred ceEEEEEEE
Q psy7036 198 SNATISLNF 206 (254)
Q Consensus 198 ~~~~~~~~v 206 (254)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 888777654
No 84
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=1e-14 Score=89.22 Aligned_cols=82 Identities=22% Similarity=0.344 Sum_probs=62.9
Q ss_pred CCeeEeCCCceeecCC---CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeE
Q psy7036 8 APSFTQKPQLRQEDEG---NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGL 83 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~ 83 (254)
.|.|...|....+.++ ..+.|.|.+.|.|.+.++|+|++..+..... ++... ++ .|.|.++. ..|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~-~g------~L~I~~~~~~~D~G~ 72 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMV-GG------NLVINNPDKYKDAGR 72 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEE-CC------EEEECcCCcCCCCEE
Confidence 3788888888766554 4899999999999999999999998753222 22111 11 69998885 689999
Q ss_pred EEEEEEcCCCceEE
Q psy7036 84 YKVKAKNKMGEVAA 97 (254)
Q Consensus 84 Y~C~~~~~~~~~~~ 97 (254)
|+|.|.|..|...+
T Consensus 73 Y~C~A~N~~G~~~s 86 (93)
T cd05849 73 YVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEeCcceEEE
Confidence 99999999987543
No 85
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.63 E-value=2.3e-15 Score=92.17 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=62.6
Q ss_pred CceeecCCCeEEEEEEEee-----CCCCceEEEeCCEEeeeC--CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036 16 QLRQEDEGNRLIFECQLLC-----NPKPDIVWFRGETQLSED--TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA 88 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 88 (254)
....+.+|+++.|.|.+.+ .|.+.+.|||++..+... ...++.. .+ ..|.|.++..+|+|.|+|.+
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~-----~~L~I~~~~~~DsG~Y~C~~ 79 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QK-----DLLWFLPAALEDSGLYTCVV 79 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cC-----CeEEEccCCcccCeEEEEEE
Confidence 3456789999999999988 688899999998764321 1222221 11 17999999999999999999
Q ss_pred EcCCCceEEEEEEEE
Q psy7036 89 KNKMGEVAASINLNF 103 (254)
Q Consensus 89 ~~~~~~~~~~~~l~v 103 (254)
.|..|.....+.|.|
T Consensus 80 ~N~~g~~~~~~~L~v 94 (94)
T cd05756 80 RNSTYCMKVSISLTV 94 (94)
T ss_pred cCCCccEEEEEEEEC
Confidence 999999888877764
No 86
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.63 E-value=1.3e-14 Score=89.19 Aligned_cols=84 Identities=29% Similarity=0.567 Sum_probs=63.0
Q ss_pred CeeeecCCCeEEEEEEEeeCCC-CeEEEEE-CCEecccCCcceEEE-cCCCCceeeEEEEccCCCCCceeEEEEEEcCC-
Q psy7036 120 SIRQEDDGKRLLFECRIQADPA-PTVIWSH-SGVQVKEDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL- 195 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~- 195 (254)
....+..|+.+.|.|.+.|.|. |.+.|++ ++..+..... ++.. ..+. +.++|.|.+++.+|.|.|+|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~-r~~v~~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQ-RISVVRNDD--YSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCC-eEEEEeCCC--CceEEEEeccChhhCEEEEEEEEcCCC
Confidence 3446778999999999999985 6999998 7766544222 2222 1111 12489999999999999999999996
Q ss_pred CcceEEEEEEE
Q psy7036 196 GESNATISLNF 206 (254)
Q Consensus 196 ~~~~~~~~~~v 206 (254)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 77888877765
No 87
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=1.3e-14 Score=87.24 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=60.2
Q ss_pred CeEEEEEEEeeCCCC--ceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 24 NRLIFECQLLCNPKP--DIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 24 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
++++|.|.+.|.|.+ .++|+++|..+.... ...+..... ....+.|.|.+++..|+|.|+|.|.|..|...+.+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEV--KETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEe--cceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 478999999998876 589999999875432 111111110 011237999999999999999999999999999999
Q ss_pred EEEe
Q psy7036 101 LNFS 104 (254)
Q Consensus 101 l~v~ 104 (254)
|.|.
T Consensus 79 L~V~ 82 (85)
T cd05854 79 LVVR 82 (85)
T ss_pred EEEE
Confidence 9986
No 88
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.63 E-value=8.9e-15 Score=85.74 Aligned_cols=74 Identities=27% Similarity=0.469 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCeEEEEECCEecccCCcceEEE-cCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 132 FECRIQADPAPTVIWSHSGVQVKEDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 132 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
|.|.+.|+|.|.++|+|++..+.......... ......+.+.|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67999999999999999999997554322211 112223445899999999999999999999999988887664
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.63 E-value=6e-15 Score=87.24 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=55.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE--EEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA--SINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~l~v 103 (254)
|+|.|.+.|.|.|.++|+|+|..+...... +...... ..|.|.+++.+|+|.|+|.+.|..|.... .+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGN-YSVSSKE-----RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCcc-EEEeCCC-----CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 579999999999999999999988654321 1111111 17999999999999999999999998644 455554
No 90
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=6.9e-15 Score=89.91 Aligned_cols=77 Identities=22% Similarity=0.448 Sum_probs=60.4
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeee------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSE------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA 96 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 96 (254)
|+.++|.|.+.|.|.+.+.|+|++..+.. ....++..... ..|.|.+++.+|+|.|+|.+.|..|...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 74 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT------GDLTITNVQRSDVGYYICQTLNVAGSIL 74 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC------CeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence 78999999999999999999998864311 11112222111 1699999999999999999999999999
Q ss_pred EEEEEEEec
Q psy7036 97 ASINLNFSR 105 (254)
Q Consensus 97 ~~~~l~v~~ 105 (254)
..+.|.|.+
T Consensus 75 ~~~~l~V~~ 83 (90)
T cd05726 75 TKAYLEVTD 83 (90)
T ss_pred EEEEEEEee
Confidence 999999875
No 91
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.63 E-value=4.5e-15 Score=87.42 Aligned_cols=67 Identities=15% Similarity=0.405 Sum_probs=56.1
Q ss_pred CeeEeCCCceeecCCCeEEEEEEEeeCCC-CceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
|.+...|+...+.+|++|+|+|.+.+.|. ..+.|||||..+.... ..|.|.++ .+|+|.|+|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~---------------~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT---------------NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC---------------CeEEEeec-ccCCEEeEEE
Confidence 56778888889999999999999988775 4699999998873211 16899999 9999999999
Q ss_pred EEcC
Q psy7036 88 AKNK 91 (254)
Q Consensus 88 ~~~~ 91 (254)
+.+.
T Consensus 65 a~~~ 68 (78)
T cd05752 65 TQGS 68 (78)
T ss_pred CCCC
Confidence 9865
No 92
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.63 E-value=5.6e-15 Score=87.56 Aligned_cols=73 Identities=22% Similarity=0.519 Sum_probs=58.5
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 89 (254)
|++.|+++.+.+|+++.|.|.+.|.|.| .|.|+|+|..+..... . . .+.|.|.++ .|+|.|.|.|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~------~--~---~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA------P--S---PSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC------C--C---CCEEEEccc--cCCeEEEEEEE
Confidence 4567888899999999999999999999 7999999998754110 0 1 116888876 57899999999
Q ss_pred cCCCceE
Q psy7036 90 NKMGEVA 96 (254)
Q Consensus 90 ~~~~~~~ 96 (254)
|..|...
T Consensus 68 N~~G~~~ 74 (81)
T cd05749 68 NAKGVTT 74 (81)
T ss_pred eccCcEE
Confidence 9998654
No 93
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.62 E-value=1.5e-14 Score=84.98 Aligned_cols=74 Identities=30% Similarity=0.482 Sum_probs=57.8
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+..... ..+.....+ ...|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47899999999999999999998864332 222222222 126999999999999999999999999888877654
No 94
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.62 E-value=1.9e-14 Score=90.17 Aligned_cols=94 Identities=26% Similarity=0.444 Sum_probs=65.5
Q ss_pred CccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189 (254)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 189 (254)
|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+|++..+... .........++......+.+..++.+|.|.|+|
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C 81 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVC 81 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEE
Confidence 45555666778889999999999999999999999999987652 111222223332221122333346899999999
Q ss_pred EEEcCCCc-ceEEEEEEE
Q psy7036 190 TAKNELGE-SNATISLNF 206 (254)
Q Consensus 190 ~~~~~~~~-~~~~~~~~v 206 (254)
.|.|..|. ....+.|.|
T Consensus 82 ~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 82 VAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEccccceecceEEEEe
Confidence 99999998 456666554
No 95
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.62 E-value=1.3e-14 Score=86.19 Aligned_cols=76 Identities=26% Similarity=0.520 Sum_probs=58.7
Q ss_pred EEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCC---CCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD---GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 131 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
.|.|.+.|.|.|.++|+|+|..+............. .....+.|.|.++..+|.|.|+|.|.|..|....++.+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 368999999999999999999987654322221111 2223457999999999999999999999999988877653
No 96
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.62 E-value=1.2e-14 Score=88.38 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=62.8
Q ss_pred CCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 14 KPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
.|....+.+|+++.|.|.+ .|.|.+.+.|+|++..+..... +...... ..|.|.+++.+|+|.|+|.+.|..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~-~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-RVRIVDD------GNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCC-CEEEccC------CEEEEeECCcccCEEEEEEEEecc
Confidence 4667788999999999998 6889999999999998765322 1221111 179999999999999999999998
Q ss_pred CceE-EEEEE
Q psy7036 93 GEVA-ASINL 101 (254)
Q Consensus 93 ~~~~-~~~~l 101 (254)
|... ..+.|
T Consensus 75 G~~~s~~~~l 84 (86)
T cd05724 75 GERESAAARL 84 (86)
T ss_pred CceeeeeEEE
Confidence 8753 34444
No 97
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.61 E-value=2.4e-14 Score=88.76 Aligned_cols=85 Identities=20% Similarity=0.457 Sum_probs=63.7
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCc---ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR---HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
.......|+.+.|.|.+.|.|.|.+.|++++..+..... .++....+. ..+.|.|.++..+|.|.|+|.|.|..|
T Consensus 10 ~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G 87 (97)
T cd05869 10 NQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHA--RVSSLTLKYIQYTDAGEYLCTASNTIG 87 (97)
T ss_pred CceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCc--cEEEEEEecCccCcCEEEEEEEecCCC
Confidence 334455589999999999999999999998876643211 112111111 224799999999999999999999999
Q ss_pred cceEEEEEEE
Q psy7036 197 ESNATISLNF 206 (254)
Q Consensus 197 ~~~~~~~~~v 206 (254)
....++.|.|
T Consensus 88 ~~~~~~~l~v 97 (97)
T cd05869 88 QDSQSMYLEV 97 (97)
T ss_pred CeeEEEEEEC
Confidence 9988887764
No 98
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=1.7e-14 Score=84.49 Aligned_cols=73 Identities=41% Similarity=0.672 Sum_probs=61.2
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
|+.+.|.|.+.+.|.+.+.|++++..+..... .....++ .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~--~~~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSR--ICIWPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCC--EEECCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999988764443 3333333 7999999999999999999999999988887764
No 99
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.61 E-value=3.3e-15 Score=86.42 Aligned_cols=68 Identities=29% Similarity=0.550 Sum_probs=55.8
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
|.|.|.+.|.|.|.++|+|++..+....++.+ ...+ .|.|.+++.+|+|.|+|.+.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~--~~~~------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHI--SPEG------YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEE--CCCC------EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999999999999999998865544332 1111 79999999999999999999999998776655
No 100
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.61 E-value=2e-14 Score=87.05 Aligned_cols=81 Identities=26% Similarity=0.491 Sum_probs=63.8
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcc-eEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
..+..|+.+.|.|.+.|.|.|.+.|+|++..+...... ........ ..|.|.++..+|+|.|+|.+.|..|....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~----~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQH----WSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCc----eEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 34678999999999999999999999999988654321 11111111 26899999999999999999999999888
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 887764
No 101
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.61 E-value=5.5e-14 Score=88.75 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=64.8
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCC-cceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcceEEEE
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDK-RHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESNATIS 203 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~~~~~ 203 (254)
.|..+.|.|.+.|.|.+.+.|++++..+.... +........+....+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 56889999999999999999999999886432 22222222233334689999997 58999999999999999999988
Q ss_pred EEEec
Q psy7036 204 LNFDS 208 (254)
Q Consensus 204 ~~v~~ 208 (254)
|.+..
T Consensus 102 L~~~~ 106 (109)
T cd05773 102 LVSTS 106 (109)
T ss_pred EEecC
Confidence 88764
No 102
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.60 E-value=1.3e-14 Score=85.19 Aligned_cols=72 Identities=29% Similarity=0.512 Sum_probs=55.5
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 103 (254)
++|.|.+.|.|.|.++|+|++..+......++.....+ .|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG------ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc------EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999999999999999999998764332333322222 69999999999999999999999874 45666654
No 103
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.60 E-value=1.6e-14 Score=88.30 Aligned_cols=81 Identities=26% Similarity=0.416 Sum_probs=58.9
Q ss_pred CCeEEEEEEEeeCCCCceEEEeC----CEEeeeCCcceEEEeecC----CcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRG----ETQLSEDTRTVMKTTPIG----TNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
|+++.|.|.+.|.|.|.++|+|+ +..+.............. .....+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 444432221111111100 0112247999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7036 95 VAASINLNF 103 (254)
Q Consensus 95 ~~~~~~l~v 103 (254)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 104
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.60 E-value=1.1e-14 Score=87.68 Aligned_cols=78 Identities=24% Similarity=0.487 Sum_probs=61.7
Q ss_pred eecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy7036 19 QEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 98 (254)
....|+++.|.|.+.+.|.+.+.|++++..+........ ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 456799999999999999999999999987754332211 1112379999999999999999999999987777
Q ss_pred EEEEE
Q psy7036 99 INLNF 103 (254)
Q Consensus 99 ~~l~v 103 (254)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 76653
No 105
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.60 E-value=6.9e-15 Score=85.57 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=56.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
+.|.|.+.|.|.|.+.|+|++..+..... .. ... ...|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~--~~~-----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK--LNN-----NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eE--EcC-----CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47899999999999999999887654321 11 111 127999999999999999999999999888887765
No 106
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=2.4e-14 Score=85.17 Aligned_cols=79 Identities=13% Similarity=0.216 Sum_probs=59.6
Q ss_pred CeEEEEEEEee--CCCCceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 24 NRLIFECQLLC--NPKPDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 24 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
+++.|.|.+.+ .+.+.+.|++||..+.... ..++... ++....+.|.|.+++..|+|.|+|.|.|..+....++.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~--~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV--GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe--ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence 47899999976 4477899999999996321 1122211 11011127999999999999999999999999999999
Q ss_pred EEEe
Q psy7036 101 LNFS 104 (254)
Q Consensus 101 l~v~ 104 (254)
|.|.
T Consensus 79 L~V~ 82 (85)
T cd05853 79 LIVR 82 (85)
T ss_pred EEEe
Confidence 9987
No 107
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.5e-14 Score=85.32 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=55.2
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEee-eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
++|.|.+.|.|.|.++|+|++.... .....++.....+. .|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD-----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC-----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4789999999999999999986422 11111222211111 6999999999999999999999999888888876
No 108
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.59 E-value=2.7e-14 Score=84.46 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=60.2
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
+.|.|.+.|.|.+.+.|+|++..+.......+.....+. .|.|.+++..|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~-----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS-----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC-----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 368999999999999999999988765444443322221 69999999999999999999999998888888774
No 109
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.59 E-value=2.7e-14 Score=84.40 Aligned_cols=72 Identities=22% Similarity=0.471 Sum_probs=54.9
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE--EEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA--TISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~--~~~~~v 206 (254)
++|.|.+.|.|.|.+.|+|++..+.............+ .|.|.++..+|.|.|.|.|.|..|.... .++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER-----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCC-----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 47899999999999999999998765432222222222 7999999999999999999999997643 455544
No 110
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.59 E-value=1.4e-14 Score=83.41 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=55.2
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+..... + ..+ ..|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~--~~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--F--KRG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--E--ccC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999999864422 1 111 17999999999999999999999998777666655
No 111
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.59 E-value=2.2e-14 Score=87.57 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCC----EEeeeCCcc--eEEEe--ecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGE----TQLSEDTRT--VMKTT--PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~--~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
|+.++|.|.+.|.|.|.++|+|++ ..+...... ..... ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999964 232211111 11110 0111111237999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7036 95 VAASINLNF 103 (254)
Q Consensus 95 ~~~~~~l~v 103 (254)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 112
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.59 E-value=8.6e-15 Score=84.81 Aligned_cols=69 Identities=26% Similarity=0.561 Sum_probs=55.4
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
++|.|.+.|.|.|.+.|+|++..+... +.... ..+ .|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~------~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--DDK------SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--eCC------EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998766432 22221 111 7999999999999999999999999888777764
No 113
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=3.1e-14 Score=86.06 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=59.3
Q ss_pred CeEEEEEEEeeCCCC--ceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 24 NRLIFECQLLCNPKP--DIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 24 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
+++.|.|.+.+.|.+ .+.|+++|..+..... ..+..... ....+.|.|.+++..|+|.|+|.+.|..|.....+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGG--KDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEec--ccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 478999999998877 5799999998764322 11110000 011227999999999999999999999999988999
Q ss_pred EEEe
Q psy7036 101 LNFS 104 (254)
Q Consensus 101 l~v~ 104 (254)
|.|.
T Consensus 79 l~V~ 82 (85)
T cd04970 79 LIVR 82 (85)
T ss_pred EEEE
Confidence 9886
No 114
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.59 E-value=3.1e-14 Score=82.65 Aligned_cols=70 Identities=27% Similarity=0.482 Sum_probs=56.8
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
+.|.|.+.|.|.|.+.|+|++..+.... .... .. ..|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~--~~~~-~~-----~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKN--RTKK-SG-----HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC--EEEc-CC-----CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999999999999999886542 2221 22 279999999999999999999999988777776653
No 115
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.58 E-value=7e-14 Score=85.90 Aligned_cols=68 Identities=28% Similarity=0.676 Sum_probs=54.7
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~ 199 (254)
+|+.+.|.|.+.|.|.|.+.|+|++..+......++... ++ .|.|.++. .+|.|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g-----~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI-DG-----NLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee-CC-----eEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 478999999999999999999999998864443333332 22 68888875 6999999999999999763
No 116
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.58 E-value=6.6e-14 Score=85.75 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=61.7
Q ss_pred CeeEeCCCceeecC---CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC-CCCCeEE
Q psy7036 9 PSFTQKPQLRQEDE---GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI-ETDAGLY 84 (254)
Q Consensus 9 p~~~~~~~~~~v~~---g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 84 (254)
|.|...|....+.+ |+++.|.|.+.|.|.+.++|++++..+.......+... .+ .|.|.++. ..|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~------~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-GG------NLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-CC------EEEEecCCccCCCEEE
Confidence 67888888776544 46799999999999999999999998843333333221 11 68898887 4899999
Q ss_pred EEEEEcCCCceE
Q psy7036 85 KVKAKNKMGEVA 96 (254)
Q Consensus 85 ~C~~~~~~~~~~ 96 (254)
+|.+.|..|...
T Consensus 75 ~C~a~N~~G~~~ 86 (91)
T cd04967 75 QCLASNIVGTVL 86 (91)
T ss_pred EEEEEcCCCEEE
Confidence 999999998644
No 117
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.58 E-value=3e-14 Score=83.83 Aligned_cols=73 Identities=27% Similarity=0.530 Sum_probs=57.4
Q ss_pred CCeEEEEEEEeeCCCCceEEEe-CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
|+.+.|.|.+.|.|.+.+.|++ ++..+....+... ...+ +|.|.+++..|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~--~~~~------~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV--YDNG------TLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE--ecCC------EEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999999999997 5665544333221 1121 69999999999999999999999988777776
Q ss_pred EE
Q psy7036 102 NF 103 (254)
Q Consensus 102 ~v 103 (254)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 54
No 118
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.58 E-value=3.9e-14 Score=83.08 Aligned_cols=72 Identities=24% Similarity=0.435 Sum_probs=57.3
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v 206 (254)
++|.|.+.|.|.|.+.|+|++..+......++....++ .|.|.++..+|.|.|+|.|.|..|.. +....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999999999999999988764333344444444 69999999999999999999999974 56666655
No 119
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.58 E-value=7e-14 Score=86.74 Aligned_cols=85 Identities=21% Similarity=0.480 Sum_probs=64.9
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC---cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... ..++..... ...+.|.|.+++.+|.|.|.|.|.|..|
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 86 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTDAGRYDCEASNRIG 86 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC--ccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence 34567789999999999999999999999886554321 112222221 1234899999999999999999999999
Q ss_pred cceEEEEEEE
Q psy7036 197 ESNATISLNF 206 (254)
Q Consensus 197 ~~~~~~~~~v 206 (254)
....++.|.|
T Consensus 87 ~~~~s~~l~v 96 (96)
T cd05732 87 GDQQSMYLEV 96 (96)
T ss_pred CcEEEEEEeC
Confidence 9888877653
No 120
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=1.2e-13 Score=84.84 Aligned_cols=72 Identities=26% Similarity=0.495 Sum_probs=55.4
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce-EEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN-ATISL 204 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~-~~~~~ 204 (254)
|+.+.|.|.+.|.|.+.+.|++++..+.......+.... + .|.|.++. ..|.|.|.|.|.|..|... ..+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~-g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA-G-----NLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEEC-C-----eEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 568999999999999999999999988644333333332 2 68888765 5999999999999999763 34443
No 121
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.57 E-value=2.9e-14 Score=85.98 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=59.3
Q ss_pred CCeEEEEEEEeeC--CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 23 GNRLIFECQLLCN--PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 23 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
|+++.|.|.+.+. |.+.+.|++++..+...................+.|.|.+++.+|+|.|+|.+.|..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 78899999887654322111000011112234568999999999999999999999998888777
Q ss_pred EEE
Q psy7036 101 LNF 103 (254)
Q Consensus 101 l~v 103 (254)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 122
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=4.2e-14 Score=82.26 Aligned_cols=70 Identities=24% Similarity=0.485 Sum_probs=56.2
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+.... ... ...++ .|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~-~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK-LNNNK-----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE-EcCCC-----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999999999987764332 111 22222 7999999999999999999999999888887765
No 123
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=9.1e-14 Score=83.63 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=60.0
Q ss_pred CeEEEEEEEeeCCCC--eEEEEECCEecccCC-cceE-EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036 128 KRLLFECRIQADPAP--TVIWSHSGVQVKEDK-RHKF-SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203 (254)
Q Consensus 128 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 203 (254)
+.+.|.|.+.+.|.| .+.|++++..+.... ..++ ...... ..+.|.|.+++..|+|.|+|.|.|..|...++..
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKE--TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecc--eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 368999999999877 589999998875432 1111 111000 1138999999999999999999999999999999
Q ss_pred EEEec
Q psy7036 204 LNFDS 208 (254)
Q Consensus 204 ~~v~~ 208 (254)
|.|..
T Consensus 79 L~V~~ 83 (85)
T cd05854 79 LVVRG 83 (85)
T ss_pred EEEEC
Confidence 98874
No 124
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.57 E-value=5.3e-14 Score=83.50 Aligned_cols=74 Identities=26% Similarity=0.421 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 204 (254)
|+.+.|.|.+.+.|.|.+.|++++..+....+...... .+ ...|.|.++..+|.|.|+|.|.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE-GG---YGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEEC-CC---EEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 67899999999999999999999887765443332222 11 1379999999999999999999999977555443
No 125
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=8.6e-14 Score=86.45 Aligned_cols=86 Identities=20% Similarity=0.444 Sum_probs=63.5
Q ss_pred CCeeeecCCCeEEEEEEEeeCCCCeEEEEEC--CEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHS--GVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... ...++...... ....|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N 85 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH--GESSLHIKDVKLSDSGRYDCEAAS 85 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC--CeeEEEEeeCCcCCCEEEEEEEec
Confidence 3456788999999999999999999999994 3333211 11223322111 113799999999999999999999
Q ss_pred CCCcceEEEEEEE
Q psy7036 194 ELGESNATISLNF 206 (254)
Q Consensus 194 ~~~~~~~~~~~~v 206 (254)
..|....++.|.|
T Consensus 86 ~~G~~~~~~~l~~ 98 (98)
T cd05870 86 RIGGHQKSMYLDI 98 (98)
T ss_pred cCCcceeEEEEeC
Confidence 9999888877654
No 126
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=2.6e-14 Score=82.66 Aligned_cols=68 Identities=38% Similarity=0.777 Sum_probs=56.0
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 204 (254)
+.|.|.+.|.|.|.+.|+|++..+..... +....++ .|.|.++..+|.|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~--~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGK--FHISPEG-----YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCC--EEECCCC-----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47899999999999999999988764433 3333333 79999999999999999999999998877665
No 127
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.56 E-value=2.3e-13 Score=84.49 Aligned_cols=86 Identities=21% Similarity=0.392 Sum_probs=65.1
Q ss_pred CCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEc--CCCCceeeEEEEccCCC-CCceeEEEEEEcC
Q psy7036 119 PSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSID--KDGHSYFASLEIIDVTI-EDAGKYKVTAKNE 194 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~-~d~G~y~C~~~~~ 194 (254)
.....+..|+.+.|.|.+.|.|.| .+.|++++..+......++... .......+.|.|.++.. +|.|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 345567889999999999999998 6999999988765432223222 22223346899999998 4589999999999
Q ss_pred CCcceEEEEE
Q psy7036 195 LGESNATISL 204 (254)
Q Consensus 195 ~~~~~~~~~~ 204 (254)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998877664
No 128
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.56 E-value=8.1e-14 Score=82.81 Aligned_cols=77 Identities=26% Similarity=0.516 Sum_probs=61.4
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
...+.+|+.+.|.|.+.+. .+.+.|+|+|..+....+.. ... . .|.|.++..+|+|.|+|.+.|..|....
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~--~~~-~-----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~ 73 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTR--ITG-E-----EVQIKDAVPRDSGLYACVTSSPSGSDTT 73 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEE--EeC-C-----EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence 4567789999999999886 56899999998886544332 222 2 7999999999999999999999888777
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
.+.|.|
T Consensus 74 ~~~v~V 79 (79)
T cd04973 74 YFSVNV 79 (79)
T ss_pred EEEEeC
Confidence 766553
No 129
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.55 E-value=1.3e-13 Score=81.54 Aligned_cols=73 Identities=27% Similarity=0.532 Sum_probs=60.7
Q ss_pred EEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 131 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
.|.|.+.|.|.|.+.|+|++..+......++....++. .|.|.++..+|.|.|+|.+.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~----~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGS----ELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCC----EEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 68999999999999999999988655444444443332 69999999999999999999999999988888775
No 130
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.55 E-value=1.2e-13 Score=85.38 Aligned_cols=83 Identities=28% Similarity=0.471 Sum_probs=61.5
Q ss_pred CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccC-----CCCCceeEEEEEE
Q psy7036 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV-----TIEDAGKYKVTAK 192 (254)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C~~~ 192 (254)
.+....+..|+.+.|.|.+.+.|.|.+.|+|++..+............++ .+.|.++ ..+|.|.|.|.|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C~a~ 79 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQCVAQ 79 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEEEEE
Confidence 34455667899999999999999999999999998865443333333343 4555554 6889999999999
Q ss_pred cC-CCcc-eEEEEEE
Q psy7036 193 NE-LGES-NATISLN 205 (254)
Q Consensus 193 ~~-~~~~-~~~~~~~ 205 (254)
|. .|.. +..+.|.
T Consensus 80 N~~~G~~~s~~~~l~ 94 (95)
T cd05722 80 NDSLGSIVSRTARLT 94 (95)
T ss_pred CCccCcEEEeeeEEe
Confidence 99 8876 4455554
No 131
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.55 E-value=8.1e-14 Score=82.93 Aligned_cols=80 Identities=19% Similarity=0.366 Sum_probs=60.2
Q ss_pred CeEEEEEEEeeCC--CCeEEEEECCEecccC-CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036 128 KRLLFECRIQADP--APTVIWSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204 (254)
Q Consensus 128 ~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 204 (254)
+++.|.|.+.+.+ .+.+.|+++|..+... ...++.... +....+.|.|.+++.+|+|.|+|.|.|..+....+..|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~-~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVG-GQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEec-cCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 3678999987744 7789999999999632 222332211 00011279999999999999999999999999999999
Q ss_pred EEec
Q psy7036 205 NFDS 208 (254)
Q Consensus 205 ~v~~ 208 (254)
.|+.
T Consensus 80 ~V~~ 83 (85)
T cd05853 80 IVRG 83 (85)
T ss_pred EEec
Confidence 8874
No 132
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.55 E-value=6.6e-14 Score=84.26 Aligned_cols=78 Identities=23% Similarity=0.415 Sum_probs=61.0
Q ss_pred eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 202 (254)
....|+.+.|.|.+.+.|.|.+.|++++..+....... ... ....|.|.++..+|+|.|+|.+.|..|....++
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRK----KKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecC----ceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 35569999999999999999999999988765332211 111 113799999999999999999999999887777
Q ss_pred EEEE
Q psy7036 203 SLNF 206 (254)
Q Consensus 203 ~~~v 206 (254)
.|.|
T Consensus 79 ~v~v 82 (82)
T cd05856 79 KVDV 82 (82)
T ss_pred EEeC
Confidence 6653
No 133
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=3.8e-14 Score=82.77 Aligned_cols=70 Identities=30% Similarity=0.556 Sum_probs=55.5
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
+.|.|.+.|.|.|.+.|+|++..+.... ... ... ...|.|.+++..|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~--~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF--ENF-----NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeE--ecC-----CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4789999999999999999998764321 111 111 127999999999999999999999998887777765
No 134
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=1.1e-13 Score=84.52 Aligned_cols=77 Identities=26% Similarity=0.535 Sum_probs=61.3
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEeccc------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKE------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
|+.+.|.|.+.+.|.|.+.|++++..+.. ....++....++ .|.|.+++.+|+|.|+|.+.|..|....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 67899999999999999999998764311 112233333333 7999999999999999999999999988
Q ss_pred EEEEEEec
Q psy7036 201 TISLNFDS 208 (254)
Q Consensus 201 ~~~~~v~~ 208 (254)
.+.|.|..
T Consensus 76 ~~~l~V~~ 83 (90)
T cd05726 76 KAYLEVTD 83 (90)
T ss_pred EEEEEEee
Confidence 88888874
No 135
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.54 E-value=1.9e-13 Score=83.10 Aligned_cols=82 Identities=28% Similarity=0.560 Sum_probs=61.4
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+ +....++.. +.|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r--~~~~~~g~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQR--VVVQKEGVR--SRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCC--EEEEeCCCe--eEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 4456788999999999999988 899998 4666544333 222223221 379999999999999999999999875
Q ss_pred -eEEEEEEE
Q psy7036 199 -NATISLNF 206 (254)
Q Consensus 199 -~~~~~~~v 206 (254)
.+++.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 55665543
No 136
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.54 E-value=4.4e-14 Score=81.40 Aligned_cols=68 Identities=21% Similarity=0.398 Sum_probs=51.6
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
+.|.|.+.|.|.|.+.|+|++.++..... .... .+. +|.|.+++.+|+|.|+|.+.+..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~--~~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHV--DGY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEe--CCC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46899999999999999999998765422 2211 111 69999999999999999999876554444433
No 137
>KOG3515|consensus
Probab=99.54 E-value=1.3e-13 Score=110.80 Aligned_cols=222 Identities=14% Similarity=0.211 Sum_probs=139.4
Q ss_pred CeeEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
|.....+-+..+..|++|.|.|.+.+. |.+.+.||+.++.+. ..... .... .|......++.-+.|.|.
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~---~~~~------~~~~~~~~~~~~~~~~c~ 77 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT---IADP------TLVTTGDVRDTVAELNCR 77 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-ccccc---ccCC------ceeeecchhhhhhhhhhh
Confidence 333333333478999999999999875 567899999988776 11111 1111 577777778888899999
Q ss_pred EEcCCCc-eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe--eCCCCeEEEEECCEecccCCcceEEE-
Q psy7036 88 AKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ--ADPAPTVIWSHSGVQVKEDKRHKFSI- 163 (254)
Q Consensus 88 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~- 163 (254)
+.|..+. ......+.+. .++.............+..+.+.|... +.|.+.+.|..+..............
T Consensus 78 a~ns~~~~~~~~~~l~v~------~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~ 151 (741)
T KOG3515|consen 78 AFNSVGMPSRCPMILDVD------YPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVG 151 (741)
T ss_pred hcccccCceecceeeccc------cCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccc
Confidence 9988654 3334444443 344333333334455688899999654 45677899999876543322111111
Q ss_pred --cCCCC-ceeeEEEEccCCCCCceeEEEEEEcC---CCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCc
Q psy7036 164 --DKDGH-SYFASLEIIDVTIEDAGKYKVTAKNE---LGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237 (254)
Q Consensus 164 --~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 237 (254)
...++ .-.+.+.+...+..+.|.|+|.+.|. .+...+...+.+.... ....+........+.+|. .
T Consensus 152 ~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------~~~~~~~~~~~qsF~~g~-~ 223 (741)
T KOG3515|consen 152 AGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------KGIGITGAQEQQSFTEGQ-T 223 (741)
T ss_pred ccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc-------ccceecchhhcCcccccc-e
Confidence 11111 11246888888899999999999984 4445555555554311 112222223335667788 9
Q ss_pred EEEEEEEe-ccCCCceeC
Q psy7036 238 IVIECRLV-GEPEPTISW 254 (254)
Q Consensus 238 ~~l~C~~~-~~p~p~~~W 254 (254)
+.|.|.+. |+|.+.++|
T Consensus 224 inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 224 INLVCNAQGGNPSQQQTW 241 (741)
T ss_pred EEEEehhhcCCcchhhhh
Confidence 99999885 568888888
No 138
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=1.7e-13 Score=82.85 Aligned_cols=80 Identities=26% Similarity=0.445 Sum_probs=59.2
Q ss_pred CeEEEEEEEeeCCCC--eEEEEECCEecccCCc-ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036 128 KRLLFECRIQADPAP--TVIWSHSGVQVKEDKR-HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204 (254)
Q Consensus 128 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 204 (254)
+.+.|.|.+.+.|.+ .+.|++++..+..... ..+.... .....+.|.|.+++.+|+|.|+|.|.|..|....+..|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG-GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe-cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 368999999999877 5799999988754321 1111000 00011379999999999999999999999999888888
Q ss_pred EEec
Q psy7036 205 NFDS 208 (254)
Q Consensus 205 ~v~~ 208 (254)
.|..
T Consensus 80 ~V~~ 83 (85)
T cd04970 80 IVRG 83 (85)
T ss_pred EEEC
Confidence 8874
No 139
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.54 E-value=2.3e-13 Score=82.88 Aligned_cols=78 Identities=22% Similarity=0.457 Sum_probs=61.6
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-e
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-N 199 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~ 199 (254)
...+.+|+.++|.|.+.+. .|.+.|++++..+.... +....++. .|.|.+++.+|.|.|.|.|.|..|.. +
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~---~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR---LQLSNDNR----TLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC---EEEeCCCC----EEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 4567789999999999999 99999999998875332 22222221 79999999999999999999999975 4
Q ss_pred EEEEEEE
Q psy7036 200 ATISLNF 206 (254)
Q Consensus 200 ~~~~~~v 206 (254)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 4666655
No 140
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=1e-13 Score=81.68 Aligned_cols=73 Identities=27% Similarity=0.524 Sum_probs=55.4
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecc-cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVK-EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++.... .....++.....+ ..|.|.+++.+|+|.|.|.|.|..|.......|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED----DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC----CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999999999999999886422 2222223222222 17999999999999999999999998888877766
No 141
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=1.4e-13 Score=80.89 Aligned_cols=73 Identities=30% Similarity=0.667 Sum_probs=57.1
Q ss_pred CCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
|+.+.|.|.+.+.|.|.+.|++ ++..+..... .....++ .|.|..+..+|.|.|+|.|.|..|..+.++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSR--TLVYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCe--EEEecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6789999999999999999997 5555443322 2222333 799999999999999999999999888877765
Q ss_pred E
Q psy7036 206 F 206 (254)
Q Consensus 206 v 206 (254)
|
T Consensus 74 v 74 (74)
T cd05764 74 I 74 (74)
T ss_pred C
Confidence 4
No 142
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=1.3e-13 Score=82.69 Aligned_cols=75 Identities=27% Similarity=0.458 Sum_probs=55.7
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCE---Ee-eeCCcc--eEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGET---QL-SEDTRT--VMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA 96 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~---~~-~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 96 (254)
|++++|.|.+.|.|.|.++|+|++. .+ ...... .+... ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 74 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT------NIGQLVIYNAQPQDAGLYTCTARNSGGLLR 74 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc------cccEEEEccCCcccCEEEEEEEecCCceEE
Confidence 7899999999999999999999742 11 111110 11111 113799999999999999999999999988
Q ss_pred EEEEEEE
Q psy7036 97 ASINLNF 103 (254)
Q Consensus 97 ~~~~l~v 103 (254)
..+.|.|
T Consensus 75 ~~~~l~v 81 (81)
T cd05765 75 ANFPLSV 81 (81)
T ss_pred EEEEEeC
Confidence 8887764
No 143
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=1.2e-13 Score=80.04 Aligned_cols=69 Identities=36% Similarity=0.639 Sum_probs=55.0
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+... . .....++ .|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~--~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-R--AEILDDK-----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-c--EEEeeCC-----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 478999999999999999998766432 1 2222232 7999999999999999999999999888777653
No 144
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.53 E-value=3e-13 Score=82.10 Aligned_cols=79 Identities=34% Similarity=0.554 Sum_probs=61.4
Q ss_pred CeeeecCCCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 120 SIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... ......++ .|.|.++..+|.|.|+|.+.|..|..
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~-~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNE-RVRIVDDG-----NLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCC-CEEEccCC-----EEEEeECCcccCEEEEEEEEeccCce
Confidence 45567789999999997 6889999999999988765432 22222233 79999999999999999999999875
Q ss_pred -eEEEEE
Q psy7036 199 -NATISL 204 (254)
Q Consensus 199 -~~~~~~ 204 (254)
...+.+
T Consensus 78 ~s~~~~l 84 (86)
T cd05724 78 ESAAARL 84 (86)
T ss_pred eeeeEEE
Confidence 344444
No 145
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=2.2e-13 Score=78.41 Aligned_cols=68 Identities=22% Similarity=0.481 Sum_probs=53.2
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~ 204 (254)
|+.+.|.|.+.|.|.|.+.|+|++..+..... ... .. ..|.|.++. |+|.|+|.|.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~--~~~-~~-----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE--MPV-GR-----NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccc--eec-Cc-----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999988754332 211 11 268888874 7899999999999987777654
No 146
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.52 E-value=2.9e-13 Score=82.69 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeeCCCCeEEEEEC----CEecccCCcceEEEcCCC-C----ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHS----GVQVKEDKRHKFSIDKDG-H----SYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~~~~-~----~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
|+.+.|.|.+.+.|.|.+.|+|+ +..+.............. . ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333332211111111111 0 01247999999999999999999999999
Q ss_pred ceEEEEEEE
Q psy7036 198 SNATISLNF 206 (254)
Q Consensus 198 ~~~~~~~~v 206 (254)
...+..|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888877766
No 147
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.52 E-value=5.1e-13 Score=80.22 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=57.1
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC--ceEEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG--EVAASIN 100 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~ 100 (254)
|++++|.|.+.+.|.+.+.|++.++........... .........+.|.|.+++.+|+|.|.|.+.+..+ ....++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEE-VKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEE-EecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 789999999999889999999877643211110000 1111223355899999999999999999998765 4566677
Q ss_pred EEEe
Q psy7036 101 LNFS 104 (254)
Q Consensus 101 l~v~ 104 (254)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7664
No 148
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=3.6e-13 Score=82.40 Aligned_cols=71 Identities=24% Similarity=0.506 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce-EEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN-ATISL 204 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~-~~~~~ 204 (254)
+..+.|.|.+.|.|.|.+.|+|++..+..... +.... ++ .|.|.++. .+|+|.|.|.|.|..|... ..++|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~-~~~~~-~g-----~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTND-RYSMV-GG-----NLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCC-eEEEE-CC-----EEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45799999999999999999999988753322 22222 23 79998885 6899999999999999763 34443
No 149
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.52 E-value=1.6e-13 Score=81.00 Aligned_cols=72 Identities=21% Similarity=0.433 Sum_probs=55.1
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceE-EEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVM-KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
+.|.|.+.| .|.+.+.|+|++..+........ ... .....+.|.|.+++..|+|.|+|.+.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR---NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE---ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 89999999999998865543321 111 1122348999999999999999999999998766553
No 150
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.51 E-value=1.5e-13 Score=80.26 Aligned_cols=70 Identities=36% Similarity=0.638 Sum_probs=55.5
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|++++..+.... .. ....+ ..|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFN----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCC----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999999999999988764321 11 11111 27999999999999999999999998888877765
No 151
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.51 E-value=3.7e-13 Score=82.40 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=57.3
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee--------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS--------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++.+.. . ......|.|.+++.+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~--~--~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK--S--TPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe--C--CCceEEEEECCCCcccCEEEEEE
Confidence 46788999999999999999999999999876431 112222111 1 11234899999999999999999
Q ss_pred EEcCCCceEEEEEEE
Q psy7036 88 AKNKMGEVAASINLN 102 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~ 102 (254)
+.... .....+.|.
T Consensus 81 ~~t~~-~~~~~~~~~ 94 (95)
T cd05882 81 IFTMP-VRTAKATVT 94 (95)
T ss_pred EEeec-cccEEEEEE
Confidence 98633 233344443
No 152
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.51 E-value=6e-13 Score=81.44 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=59.2
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEE-CCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE- 197 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~- 197 (254)
....+..|+.+.|.|.+.|.|. .+.|++ ++..+............ ...+.|.|.+++.+|.|.|+|.|.|..|.
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQND---DVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCC---CCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 4466888999999999999864 999997 55555433332222211 12348999999999999999999998654
Q ss_pred ceEEEEEE
Q psy7036 198 SNATISLN 205 (254)
Q Consensus 198 ~~~~~~~~ 205 (254)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 46666554
No 153
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.50 E-value=2.7e-13 Score=82.70 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=56.2
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECC----EecccCCcce--EEEc--CCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSG----VQVKEDKRHK--FSID--KDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~----~~~~~~~~~~--~~~~--~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
|+.++|.|.+.+.|.|.+.|+|++ ..+....... .... .+.. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999963 2222111111 1110 0000 01126999999999999999999999999
Q ss_pred ceEEEEEEE
Q psy7036 198 SNATISLNF 206 (254)
Q Consensus 198 ~~~~~~~~v 206 (254)
...+..|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888887776
No 154
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.50 E-value=1.8e-13 Score=80.89 Aligned_cols=66 Identities=23% Similarity=0.486 Sum_probs=49.5
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC----CCCeEEEEEEEcCCCceE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE----TDAGLYKVKAKNKMGEVA 96 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 96 (254)
++|.|.+.|.|.|.++|+|++..+.......+......+ .|.|.+++. .|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 478999999999999999999987543333332222111 688888754 689999999999998754
No 155
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.50 E-value=1.2e-12 Score=79.99 Aligned_cols=92 Identities=26% Similarity=0.420 Sum_probs=69.2
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeCCEEeeeC--CcceEEEeecCCcceEEEEEEeccCCCC-CeE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSED--TRTVMKTTPIGTNKYLVALELDDVIETD-AGL 83 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~ 83 (254)
+|.+ .......+.+|+++.|.|.+.+.|.| .+.|..++..+... .++.+.... ......+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcE
Confidence 6766 55667788999999999999777765 57999888776554 344443322 233456689999998877 799
Q ss_pred EEEEEEcCCCceEEEEEE
Q psy7036 84 YKVKAKNKMGEVAASINL 101 (254)
Q Consensus 84 Y~C~~~~~~~~~~~~~~l 101 (254)
|.|.|.|..|.+...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998776655
No 156
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.50 E-value=4.6e-13 Score=77.16 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=53.8
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
+.|.|.+.|.|.|.+.|+|++..+..... ..... +. +|.|.++..+|+|.|+|.|.|..........+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~-~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD-GY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC-CC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 46899999999999999999988765422 22222 22 7999999999999999999998666555555443
No 157
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.50 E-value=3.2e-13 Score=80.69 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=55.4
Q ss_pred CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
.|+...+.+|+++.|.|.+. .+.+.+.|++||..+..... ++.. ..+ .|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~-~~~------~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLL-YRD------GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEE-ECC------cEEEeCCCHHHCEEEEEEEEecc
Confidence 46778899999999999985 46788999999999876532 2222 112 59999999999999999998653
No 158
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.50 E-value=5.9e-13 Score=94.72 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=78.5
Q ss_pred eeeecCCCeEEEEEEEeeCC-----------CCeEEEEECCEecc--cC-Cc---ceEEEcCCCCceeeEEEEccCCCCC
Q psy7036 121 IRQEDDGKRLLFECRIQADP-----------APTVIWSHSGVQVK--ED-KR---HKFSIDKDGHSYFASLEIIDVTIED 183 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~-----------~~~~~W~~~~~~~~--~~-~~---~~~~~~~~~~~~~~~l~i~~~~~~d 183 (254)
...+.+|+.+.|.|.+.+.+ ...+.|+|++.... .. .. ..+.....+.. ...|.|.+++.+|
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r-~~~L~I~~v~~~D 109 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDR-SENLWIGNVINID 109 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecC-CCeEEECCCChHH
Confidence 45677899999999986643 34799999875421 10 10 00000100000 1279999999999
Q ss_pred ceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEec-----cCCCceeC
Q psy7036 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-----EPEPTISW 254 (254)
Q Consensus 184 ~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~-----~p~p~~~W 254 (254)
+|.|+|.|.|..+....++.|.|.. + +....+.+|+ .+.|.|.+.+ .|.|.++|
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~----------~------~~~~~~~~G~-~v~L~C~~~~~~~~~~p~p~I~W 168 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDS----------G------TINYQFNSGK-DSKLHCYGTDGISSTFKDYTLTW 168 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEec----------C------CccceEecCC-CEEEEeeCCCCccccCCCceEEE
Confidence 9999999999888877777777742 1 1122456788 9999999863 46789999
No 159
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.49 E-value=3.4e-13 Score=79.52 Aligned_cols=67 Identities=21% Similarity=0.462 Sum_probs=48.6
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCC----CCCeEEEEEEEcCCCceEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIE----TDAGLYKVKAKNKMGEVAA 97 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~ 97 (254)
+.|.|.+.|.|.|.++|+|++..+..............+ +|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 478999999999999999999987433332232222111 677777664 3789999999999987544
No 160
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.49 E-value=4e-13 Score=81.94 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCc--ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR--TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
.|..+.+.+|+++.|.|.+.+ |.+.+.|++++..+..... .+.... .. .|.|.+++.+|+|.|.|.+.+.
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~-----~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--ED-----GLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CC-----CEEEccCCHHHCEEEEEEEecC
Confidence 355677899999999999976 7789999999987654321 122211 11 5899999999999999999865
Q ss_pred C-CceEEEEEEEEe
Q psy7036 92 M-GEVAASINLNFS 104 (254)
Q Consensus 92 ~-~~~~~~~~l~v~ 104 (254)
. +....+..|.|.
T Consensus 74 ~~~~~~~~~~l~V~ 87 (89)
T cd04979 74 GFKQTLATYSLNVL 87 (89)
T ss_pred ccceeEeEEEEEEe
Confidence 4 445667777764
No 161
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.48 E-value=1.1e-12 Score=79.56 Aligned_cols=82 Identities=22% Similarity=0.450 Sum_probs=63.1
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA 97 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 97 (254)
..+.+|+++.|.|.+.+.|.+.+.|++++..+.......... .......|.|.++..+|+|.|.|.+.|..|....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 356789999999999988999999999998776443222111 1112337999999999999999999999988777
Q ss_pred EEEEEE
Q psy7036 98 SINLNF 103 (254)
Q Consensus 98 ~~~l~v 103 (254)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05729 80 TYKVDV 85 (85)
T ss_pred EEEEeC
Confidence 777653
No 162
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.48 E-value=6.2e-13 Score=81.70 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=57.4
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCceEEEeCCEE--------eeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ--------LSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
++.+.+.+|++++|.|.+.+.|.+.+.||+.+.. .....++..... .....+|.|.+++.+|+|.|.|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC----CCCcEEEEECcCCcccCEEEEE
Confidence 4567899999999999999999999999864321 112223322111 1122379999999999999999
Q ss_pred EEEcCCCceEEEEEEE
Q psy7036 87 KAKNKMGEVAASINLN 102 (254)
Q Consensus 87 ~~~~~~~~~~~~~~l~ 102 (254)
.+.+..+ ......|.
T Consensus 80 ~~~t~~~-~~~~~~l~ 94 (95)
T cd07701 80 SLFTMPV-KTSKAYLT 94 (95)
T ss_pred EeEeecC-ccEEEEEE
Confidence 9987433 34455554
No 163
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.48 E-value=3.3e-13 Score=81.58 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=62.0
Q ss_pred EeCCCceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 12 TQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 12 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
...|....+.+|++++|.|.+.+ .|.+.+.|++++..+.... ... ...|.|.+++.+|+|.|.|.+.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~-----~~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDF-----NGILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------ccc-----CCEEEECCCCHHHCEEEEEEEec
Confidence 35667778999999999999964 6788999999886543211 001 12799999999999999999999
Q ss_pred CCCceEEEEEE
Q psy7036 91 KMGEVAASINL 101 (254)
Q Consensus 91 ~~~~~~~~~~l 101 (254)
..|.....+.|
T Consensus 74 ~~g~~~~~~~l 84 (85)
T cd05754 74 MLDTDEATATL 84 (85)
T ss_pred cCCeEeEEEEE
Confidence 99887776654
No 164
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.47 E-value=3.8e-13 Score=80.47 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=52.3
Q ss_pred CceeecCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
....+.+|++++|+|.+.+ .+...+.|||+|..+.... ....|.|.+++.+|+|.|+|.+.+..+.
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 3457899999999999853 5667899999997653211 0127999999999999999999988864
No 165
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.47 E-value=1.1e-12 Score=77.76 Aligned_cols=70 Identities=16% Similarity=0.387 Sum_probs=55.0
Q ss_pred CCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 118 KPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
.+..+.+..|+.+.|.|.+.|.|.| .+.|+|++..+..... . .. +.|.|..+ .|.|.|.|.|.|..|
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~----~-~~-----s~L~i~~~--~d~g~Y~C~A~N~~G 71 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA----P-SP-----SVLNVPGL--NETSKFSCEAHNAKG 71 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC----C-CC-----CEEEEccc--cCCeEEEEEEEeccC
Confidence 3456778899999999999999999 7999999998753110 1 11 27888876 478999999999999
Q ss_pred cce
Q psy7036 197 ESN 199 (254)
Q Consensus 197 ~~~ 199 (254)
...
T Consensus 72 ~~~ 74 (81)
T cd05749 72 VTT 74 (81)
T ss_pred cEE
Confidence 654
No 166
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.47 E-value=4.9e-13 Score=81.86 Aligned_cols=80 Identities=19% Similarity=0.323 Sum_probs=61.4
Q ss_pred eeeecCCCeEEEEEEEee-----CCCCeEEEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 121 IRQEDDGKRLLFECRIQA-----DPAPTVIWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... ...++... ++ .|.|.++..+|+|.|.|.+.|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~-~~-----~L~I~~~~~~DsG~Y~C~~~N 81 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ-KD-----LLWFLPAALEDSGLYTCVVRN 81 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec-CC-----eEEEccCCcccCeEEEEEEcC
Confidence 345668999999999888 678899999998664322 12223222 22 799999999999999999999
Q ss_pred CCCcceEEEEEEE
Q psy7036 194 ELGESNATISLNF 206 (254)
Q Consensus 194 ~~~~~~~~~~~~v 206 (254)
..|.....+.|.|
T Consensus 82 ~~g~~~~~~~L~v 94 (94)
T cd05756 82 STYCMKVSISLTV 94 (94)
T ss_pred CCccEEEEEEEEC
Confidence 9998888877654
No 167
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.46 E-value=9.5e-13 Score=78.93 Aligned_cols=75 Identities=24% Similarity=0.421 Sum_probs=55.4
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEe---cccCC-c--ceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQ---VKEDK-R--HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~---~~~~~-~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
|+.+.|.|.+.+.|.|.+.|+|++.. +.... . ..+..... ..|.|.++..+|+|.|.|.+.|..|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNI-----GQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccc-----cEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 67899999999999999999997421 11011 0 01111111 37999999999999999999999999888
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 877754
No 168
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.46 E-value=1.1e-12 Score=79.05 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=58.8
Q ss_pred CCeEEEEEEEeeC--CCCeEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036 127 GKRLLFECRIQAD--PAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203 (254)
Q Consensus 127 g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 203 (254)
|+.+.|.|.+.+. |.+.+.|++++..+....... .....+.....+.|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 788999998776543221100 0011112234468999999999999999999999998888877
Q ss_pred EEE
Q psy7036 204 LNF 206 (254)
Q Consensus 204 ~~v 206 (254)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 169
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.46 E-value=8.7e-13 Score=77.76 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=47.9
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccC----CCCCeEEEEEEEcCCCceEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI----ETDAGLYKVKAKNKMGEVAA 97 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~ 97 (254)
+.|.|.+.|.|.|.++|+|++..+.......+.....+ ..|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~-----~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS-----GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC-----ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46899999999999999999987643222222221111 168888764 24699999999999997543
No 170
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.45 E-value=8.3e-13 Score=77.94 Aligned_cols=72 Identities=21% Similarity=0.455 Sum_probs=54.7
Q ss_pred EEEEEEEee-CCCCeEEEEECCEecccCCcceE-EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036 130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKF-SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203 (254)
Q Consensus 130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 203 (254)
+.|.|.+.+ .|.+.+.|+|++..+........ ..... ...+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNK--KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 89999999999988865443221 11111 11248999999999999999999999998776654
No 171
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.45 E-value=8.1e-13 Score=78.64 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=49.9
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeC------CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce-EEE
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSED------TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV-AAS 98 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~ 98 (254)
|+|.|.+.|.|.|.+.|++++...... ...++..... .+|.|.++..+|+|.|.|.+.|..|.. ...
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~ 74 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN------GSLLIKHVLEEDSGYYLCKVSNDVGADASKS 74 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC------CeEEECcCCcccCEEEEEEEEeCCCCCCceE
Confidence 579999999999999999975422110 1111211111 279999999999999999999999875 444
Q ss_pred EEEE
Q psy7036 99 INLN 102 (254)
Q Consensus 99 ~~l~ 102 (254)
+.|.
T Consensus 75 ~~l~ 78 (79)
T cd05734 75 MVLT 78 (79)
T ss_pred EEEe
Confidence 4444
No 172
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=9.8e-13 Score=77.74 Aligned_cols=65 Identities=26% Similarity=0.612 Sum_probs=49.6
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCC----CCceeEEEEEEcCCCcce
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTI----EDAGKYKVTAKNELGESN 199 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~ 199 (254)
+.|.|.+.|.|.|.+.|+|++..+.......+.... ++ .|.|.++.. +|.|.|.|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 468999999999999999999887543333333322 33 788887753 689999999999999753
No 173
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.45 E-value=4.6e-12 Score=76.09 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC--cceEEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG--ESNATISL 204 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~--~~~~~~~~ 204 (254)
|+.+.|.|.+.+.|.+.+.|++.++..............+.....+.|.|.+++.+|+|.|.|.+.|..+ ...+++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999999999999998775432111110011111222345899999999999999999999776 44566666
Q ss_pred EE
Q psy7036 205 NF 206 (254)
Q Consensus 205 ~v 206 (254)
.|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 55
No 174
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.44 E-value=3.2e-12 Score=78.29 Aligned_cols=68 Identities=28% Similarity=0.606 Sum_probs=52.8
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCC-CCCceeEEEEEEcCCCcce
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-IEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~C~~~~~~~~~~ 199 (254)
.|..+.|.|.+.+.|.+.+.|++++..+.......+.... + .|.|.++. .+|.|.|+|.|.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~-~-----~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG-G-----NLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC-C-----EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 3467999999999999999999999887543333333322 2 68888876 4899999999999998653
No 175
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.44 E-value=2.2e-12 Score=76.04 Aligned_cols=66 Identities=27% Similarity=0.543 Sum_probs=48.7
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEc-CCCCceeeEEEEccCC----CCCceeEEEEEEcCCCcceE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID-KDGHSYFASLEIIDVT----IEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~~ 200 (254)
+.|.|.+.|.|.|.+.|+|++..+......++... .++ .|.|..+. .+|+|.|.|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG-----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc-----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46899999999999999999987643333333332 233 68888753 24699999999999997643
No 176
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=2e-12 Score=76.18 Aligned_cols=66 Identities=27% Similarity=0.550 Sum_probs=48.9
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCC----CCceeEEEEEEcCCCcceE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTI----EDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~ 200 (254)
+.|.|.+.|.|.|.+.|+|++..+............ ++ .|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 478999999999999999999887433333333322 33 677776654 3789999999999997644
No 177
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.43 E-value=1.3e-12 Score=77.11 Aligned_cols=72 Identities=21% Similarity=0.456 Sum_probs=52.2
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCC--cceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDT--RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 100 (254)
+.|+|.+.+ .|.+.++||++|..+.... ..++.... ......|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK---KKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe---CCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 478999864 6788999999998875432 11122111 112237999999999999999999999988766553
No 178
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.43 E-value=1.2e-12 Score=77.14 Aligned_cols=63 Identities=19% Similarity=0.408 Sum_probs=50.4
Q ss_pred cCCCeeeecCCCeEEEEEEEeeCCC-CeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036 117 KKPSIRQEDDGKRLLFECRIQADPA-PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
..+....+.+|+.++|.|.+.+.|. ..+.|+|++..+... .+ .|.|.++ .+|+|.|+|.|.|.
T Consensus 5 ~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------~~-----~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 5 LDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------TN-----SYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------CC-----eEEEeec-ccCCEEeEEECCCC
Confidence 3445567889999999999988775 469999999876321 11 6899999 99999999999875
No 179
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=2e-12 Score=76.94 Aligned_cols=71 Identities=27% Similarity=0.521 Sum_probs=51.0
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccC------CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEE
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKED------KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATI 202 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~ 202 (254)
++|.|.+.|+|.|.+.|++++...... ...++....++ +|.|.++..+|.|.|.|.|.|..|.. +..+
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG-----SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC-----eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 478999999999999999964321110 11222222333 79999999999999999999999976 4555
Q ss_pred EEE
Q psy7036 203 SLN 205 (254)
Q Consensus 203 ~~~ 205 (254)
.|.
T Consensus 76 ~l~ 78 (79)
T cd05734 76 VLT 78 (79)
T ss_pred EEe
Confidence 544
No 180
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.41 E-value=1.4e-11 Score=74.73 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=72.3
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCe-EEEEECCEecccCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
..+.+..|+.+.|.|.+..+|+|. +.|.+++..+.......+.... ...+|.+.|.|.+++.++.|.|+|.|.|...+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456788999999999999999998 9999988776544442333332 33578899999999999999999999999999
Q ss_pred ceEEEEEEEe
Q psy7036 198 SNATISLNFD 207 (254)
Q Consensus 198 ~~~~~~~~v~ 207 (254)
...++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999888775
No 181
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.41 E-value=1.1e-11 Score=75.82 Aligned_cols=88 Identities=23% Similarity=0.403 Sum_probs=65.8
Q ss_pred cCCCeeeecCCCeEEEEEEEeeCCCC-eEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCC-ceeEEEEEE
Q psy7036 117 KKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIED-AGKYKVTAK 192 (254)
Q Consensus 117 ~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~ 192 (254)
.......+..|+.+.|.|.+.+.|+| .+.|.+++..+.... +..+..........+.|.|.++...| .|.|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~ 85 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW 85 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence 44456678899999999999888876 589998887765443 23333222333445799999998766 799999999
Q ss_pred cCCCcceEEEEE
Q psy7036 193 NELGESNATISL 204 (254)
Q Consensus 193 ~~~~~~~~~~~~ 204 (254)
|.+|.....++|
T Consensus 86 N~~G~d~~~i~L 97 (98)
T cd05898 86 NSFGSGTAIIQL 97 (98)
T ss_pred eCCccceEEEEe
Confidence 999999887765
No 182
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.41 E-value=1.2e-11 Score=75.07 Aligned_cols=89 Identities=19% Similarity=0.327 Sum_probs=71.9
Q ss_pred CceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
....|.+|+++.|.|.+...|.|. +.|.+++..+.............+...+.+.|.+.+++..|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456789999999999999999997 9999998876544332233333345568889999999999999999999999988
Q ss_pred eEEEEEEEEe
Q psy7036 95 VAASINLNFS 104 (254)
Q Consensus 95 ~~~~~~l~v~ 104 (254)
...++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888887763
No 183
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.40 E-value=3e-12 Score=77.85 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=55.9
Q ss_pred eeecCCCeEEEEEEEee-----CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 18 RQEDEGNRLIFECQLLC-----NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
..+.+|+++.|.|...+ .|.+.+.|||++.++...... .. .+. .|.|.+++.+|+|.|+|.+.+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~-----~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGS-----KLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCC-----EEEEeeCChhhCEEEEEEEEecC
Confidence 46789999999999743 257899999999988754432 21 111 79999999999999999999887
Q ss_pred CceEEEE
Q psy7036 93 GEVAASI 99 (254)
Q Consensus 93 ~~~~~~~ 99 (254)
+.....+
T Consensus 76 ~~~~~~~ 82 (92)
T cd05757 76 NGKQYNV 82 (92)
T ss_pred CCEEEEE
Confidence 7644433
No 184
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.40 E-value=2.5e-12 Score=75.95 Aligned_cols=72 Identities=24% Similarity=0.485 Sum_probs=52.1
Q ss_pred EEEEEEEee-CCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEE
Q psy7036 130 LLFECRIQA-DPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203 (254)
Q Consensus 130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 203 (254)
+.|.|.+.+ .|.+.+.|++++..+.... ..++...... ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKK--KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCC--cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999764 6778999999998875432 1112211111 1247999999999999999999999998776654
No 185
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.40 E-value=5.5e-12 Score=75.43 Aligned_cols=79 Identities=24% Similarity=0.607 Sum_probs=59.3
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
.|.+...+ ..+.+|++++|.|.+.+.|...+.|++++..+..... .+.+.+++..|+|.|+|.
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~ 63 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCR 63 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEE
Confidence 36666555 4588999999999999888899999999987774322 266688889999999999
Q ss_pred EEcCCC-ceEEEEEEEE
Q psy7036 88 AKNKMG-EVAASINLNF 103 (254)
Q Consensus 88 ~~~~~~-~~~~~~~l~v 103 (254)
+.+..+ .....+.|.|
T Consensus 64 ~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 64 ASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEeCCCCeEeeeEEeeC
Confidence 998654 3444555543
No 186
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.38 E-value=1.4e-11 Score=74.53 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=61.1
Q ss_pred eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 202 (254)
.+..|+.+.|.|.+.+.|.+.+.|++++..+........... ......|.|.++..+|.|.|.|.+.|..|....++
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~ 81 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY 81 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence 455799999999999999999999999887654322211111 11123799999999999999999999999877777
Q ss_pred EEEE
Q psy7036 203 SLNF 206 (254)
Q Consensus 203 ~~~v 206 (254)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05729 82 KVDV 85 (85)
T ss_pred EEeC
Confidence 6653
No 187
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.38 E-value=4e-12 Score=77.32 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=58.3
Q ss_pred CceeecCCCeEEEEEEEe-----------eCCCCceEEEeCCEEeeeCCc-----ceEEEeecCCcceEEEEEEeccCCC
Q psy7036 16 QLRQEDEGNRLIFECQLL-----------CNPKPDIVWFRGETQLSEDTR-----TVMKTTPIGTNKYLVALELDDVIET 79 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~-----------~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~ 79 (254)
....+.+||++.|.|... ......+.|||++..+..... .++.. .+. .|.|.++..+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~-----~Lwf~Pa~~e 80 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EED-----SIWFRPAELQ 80 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCC-----EEEEEeCChh
Confidence 446789999999999972 122447999999755544321 12221 122 7999999999
Q ss_pred CCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 80 DAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 80 d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
|+|.|+|++.|........+.|+|
T Consensus 81 DSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 81 DSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred hCeEEEEEECCCCcceEEEEEEEC
Confidence 999999999998877776666654
No 188
>PHA03376 BARF1; Provisional
Probab=99.36 E-value=8.5e-11 Score=78.14 Aligned_cols=126 Identities=20% Similarity=0.206 Sum_probs=75.4
Q ss_pred ceeecCCCeEEEEEEEee---CCCCceEEEeC----CEEe-e----------eCCcceEEEeecCCcceEEEEEEeccCC
Q psy7036 17 LRQEDEGNRLIFECQLLC---NPKPDIVWFRG----ETQL-S----------EDTRTVMKTTPIGTNKYLVALELDDVIE 78 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~----~~~~-~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 78 (254)
.+.+..|+++.|+|..+. .+...|.|+|. ...+ . -..+.+.....+. .+.+|.|.+++.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~---gnvsLvI~~l~l 96 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA---NTFFLVVTAANI 96 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC---CeEEEEEEeeee
Confidence 457789999999999863 23457999994 2211 1 1122222221112 345899999999
Q ss_pred CCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE
Q psy7036 79 TDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV 151 (254)
Q Consensus 79 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~ 151 (254)
+|.|.|+|.+..........--|.+.. |..............-+..++.|.+.++|.|.+.|..+..
T Consensus 97 SDdGtY~C~fQkge~~~~k~ehLt~V~------~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 97 SHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred cCCceEEEEEEcCCCceeeeeeeeeee------cceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999999987654433333333221 0000000000011114456889998889999999987654
No 189
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.36 E-value=5e-12 Score=76.87 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=53.5
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeee--------------CCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSE--------------DTRTVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
+.+.+|++|+|.|.+.+.+.+.+.||+++..... ..++.... .........|.|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence 4578999999999998888899999987633211 11222221 1112345589999999999999
Q ss_pred EEEEEEcCCCc
Q psy7036 84 YKVKAKNKMGE 94 (254)
Q Consensus 84 Y~C~~~~~~~~ 94 (254)
|.|.+.|..++
T Consensus 80 Y~C~v~~~~~~ 90 (94)
T cd07690 80 YICEVEDKKEE 90 (94)
T ss_pred EEEEECCccce
Confidence 99999876543
No 190
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.35 E-value=2.3e-11 Score=74.50 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=51.9
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEeccc-CC-----cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DK-----RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
....+..|+.+.|.|.+.+.|.+.+.|++.+..+.. .. ..++...... .....|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST-PTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC-CceEEEEECCCCcccCEEEEEEEEe
Confidence 356778899999999999999999999987753211 10 1111111111 0123899999999999999999987
No 191
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.35 E-value=1.2e-11 Score=74.49 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCeEEEEEEEeeCC--CCceEEEeCCEEeeeC---CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036 23 GNRLIFECQLLCNP--KPDIVWFRGETQLSED---TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA 97 (254)
Q Consensus 23 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 97 (254)
|+++.|.|.+.+.+ ...+.|.+.+...... ...+.. ........+.|.|.+++..|+|.|+|.+.|..+....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~--~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS--LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc--ccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 78999999998755 4578998877643211 110100 0111234568999999999999999999998888777
Q ss_pred EEEEEEe
Q psy7036 98 SINLNFS 104 (254)
Q Consensus 98 ~~~l~v~ 104 (254)
...|.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 8887774
No 192
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.33 E-value=6e-12 Score=76.30 Aligned_cols=73 Identities=21% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEee--eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 15 PQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLS--EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
.+...+.+|+.+.|.|.. .|.|.+.+.|++++..+. ...+ ++....++ .|.|.+++.+|+|.|+|.|.|.
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r-~~~~~~~G------~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGR-RFVSQTNG------NLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCC-eEEeCCCC------cEEEeecCHhhCceeEEEEEec
Confidence 345678999999999986 668899999999987542 2222 22222222 7999999999999999999987
Q ss_pred CCc
Q psy7036 92 MGE 94 (254)
Q Consensus 92 ~~~ 94 (254)
...
T Consensus 83 ~~~ 85 (96)
T cd05727 83 SST 85 (96)
T ss_pred ccC
Confidence 643
No 193
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.33 E-value=2.7e-11 Score=74.79 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=56.1
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEe-e-------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-S-------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+...+.+|++++|.|.+.+.+.+.+.|++.+..+ . ...++.+. . .......|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~--~--~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV--N--FSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE--c--CCCCeeEEEEccCCcccCEEEEEE
Confidence 4567899999999999988788899998633221 1 11222221 1 111234799999999999999999
Q ss_pred EEcCCCceEEEEEEEE
Q psy7036 88 AKNKMGEVAASINLNF 103 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~v 103 (254)
+.+.. .....+.|.|
T Consensus 81 ~~~~~-~~~~~~~~~v 95 (95)
T cd05717 81 LYTMP-VQTAKATVTV 95 (95)
T ss_pred EecCC-CceEEEEEEC
Confidence 98654 3345555543
No 194
>smart00409 IG Immunoglobulin.
Probab=99.33 E-value=9.2e-11 Score=70.93 Aligned_cols=83 Identities=22% Similarity=0.465 Sum_probs=63.2
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
....+.+|+++.|.|.+.+.+.+.+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 455778999999999998777889999998 77775344433322211 348999999999999999999988777
Q ss_pred eEEEEEEEE
Q psy7036 95 VAASINLNF 103 (254)
Q Consensus 95 ~~~~~~l~v 103 (254)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666666654
No 195
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.33 E-value=9.2e-11 Score=70.93 Aligned_cols=83 Identities=22% Similarity=0.465 Sum_probs=63.2
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeC-CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
....+.+|+++.|.|.+.+.+.+.+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 455778999999999998777889999998 77775344433322211 348999999999999999999988777
Q ss_pred eEEEEEEEE
Q psy7036 95 VAASINLNF 103 (254)
Q Consensus 95 ~~~~~~l~v 103 (254)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 666666654
No 196
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.33 E-value=2.3e-11 Score=73.98 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=55.3
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCCE--EeeeC--CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE-cCC
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGET--QLSED--TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK-NKM 92 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~ 92 (254)
+.+.+|+++.|.|.. +.|.+.+.||+.+. ..... ...+.... ...|.|.+++.+|+|.|+|.+. +..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-------~~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-------ERGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe-------cCeEEEeeCChhHCEEEEEEEEccCC
Confidence 457899999999996 47888999998432 21110 11111111 1269999999999999999997 566
Q ss_pred CceEEEEEEEEe
Q psy7036 93 GEVAASINLNFS 104 (254)
Q Consensus 93 ~~~~~~~~l~v~ 104 (254)
+.....++|.|.
T Consensus 78 ~~~~~~~~l~v~ 89 (91)
T cd05871 78 SQTLAKYTLHVI 89 (91)
T ss_pred eEEEEEEEEEEe
Confidence 666677777775
No 197
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.32 E-value=3.6e-11 Score=73.26 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=59.8
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCC--cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK--RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG- 196 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~- 196 (254)
....+..|+.+.|.|.+.+ |.+.+.|++++..+.... ..++..... .|.|.++..+|+|.|.|.+.+..+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~------~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED------GLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC------CEEEccCCHHHCEEEEEEEecCccc
Confidence 3456778999999999876 778999999987765432 123333222 589999999999999999987654
Q ss_pred cceEEEEEEEe
Q psy7036 197 ESNATISLNFD 207 (254)
Q Consensus 197 ~~~~~~~~~v~ 207 (254)
....+..|.|.
T Consensus 77 ~~~~~~~l~V~ 87 (89)
T cd04979 77 QTLATYSLNVL 87 (89)
T ss_pred eeEeEEEEEEe
Confidence 44666776664
No 198
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.31 E-value=3.2e-11 Score=72.86 Aligned_cols=76 Identities=32% Similarity=0.543 Sum_probs=58.9
Q ss_pred CCeeeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 119 PSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
+....+..|+.++|.|.+.+ .|.+.+.|++++..+... . ...+ ..|.|.+++.+|+|.|.|.+.|..|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~-~~~~-----~~L~I~~v~~~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----A-MDFN-----GILTIRNVQLSDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----c-cccC-----CEEEECCCCHHHCEEEEEEEeccCCe
Confidence 34567788999999999865 678899999988654321 1 1112 27999999999999999999999998
Q ss_pred ceEEEEE
Q psy7036 198 SNATISL 204 (254)
Q Consensus 198 ~~~~~~~ 204 (254)
......|
T Consensus 78 ~~~~~~l 84 (85)
T cd05754 78 DEATATL 84 (85)
T ss_pred EeEEEEE
Confidence 8776554
No 199
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.31 E-value=2.5e-11 Score=68.83 Aligned_cols=63 Identities=27% Similarity=0.525 Sum_probs=49.1
Q ss_pred CCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
+|++++|.|.+.+.+.+.+.|++++..+.. .... ... ...|.|.+++..|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~-----~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SAS-----GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecC-----CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999988788889999999987761 1111 111 12799999999999999999987653
No 200
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.29 E-value=9e-11 Score=72.11 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=54.9
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe--------cccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ--------VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 191 (254)
..+.+.+|+++.|.|.+.+.|.+.+.|++.+.. ..... ++...... ....+|.|.+++.+|+|.|.|.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~--r~~~~~~~-~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN--RIELVRAS-WHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCC--CEEEEECC-CCcEEEEECcCCcccCEEEEEEe
Confidence 456788999999999999999999999863321 11112 22221110 01137999999999999999999
Q ss_pred EcCCCcceEEEEEE
Q psy7036 192 KNELGESNATISLN 205 (254)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (254)
.+..+ .+.+..|.
T Consensus 82 ~t~~~-~~~~~~l~ 94 (95)
T cd07701 82 FTMPV-KTSKAYLT 94 (95)
T ss_pred EeecC-ccEEEEEE
Confidence 97433 24444443
No 201
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.28 E-value=9.2e-11 Score=70.13 Aligned_cols=69 Identities=22% Similarity=0.444 Sum_probs=54.2
Q ss_pred CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
+....+..|+++.|.|.+. .+.+.+.|++++..+..... ++....+ .|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~-r~~~~~~------~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESA-KYLLYRD------GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCc-eEEEECC------cEEEeCCCHHHCEEEEEEEEecc
Confidence 3456778899999999975 46789999999999875532 3333333 69999999999999999998753
No 202
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.28 E-value=4.6e-11 Score=72.67 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=56.8
Q ss_pred eeecCCCeEEEEEEEee-----CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 122 RQEDDGKRLLFECRIQA-----DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
..+..|....|.|...+ +|.+.+.|+|++..+..... .. . .++ .|.|.++..+|+|.|+|.+.|..+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~-~~-~-~~~-----~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRK-RF-V-KGS-----KLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCcc-EE-e-cCC-----EEEEeeCChhhCEEEEEEEEecCC
Confidence 45667899999998643 25679999999998865432 22 1 222 799999999999999999999988
Q ss_pred cceEEEEEE
Q psy7036 197 ESNATISLN 205 (254)
Q Consensus 197 ~~~~~~~~~ 205 (254)
.....++..
T Consensus 77 ~~~~~~t~t 85 (92)
T cd05757 77 GKQYNVTRT 85 (92)
T ss_pred CEEEEEEEE
Confidence 765444333
No 203
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.26 E-value=5.8e-11 Score=72.11 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=51.7
Q ss_pred eeecCCCeEEEEEEE-e----eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 18 RQEDEGNRLIFECQL-L----CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
..+.+|.+..|.|.- . ..+.+.++||||+.++...... ........ .|.|.+++.+|+|.|+|++.+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~-~~~~~~~~-----~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK-FYSLKGST-----YLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc-eEecCCCC-----EEEEEEcChhhCEEEEEEEEEee
Confidence 356789999999983 2 2356799999999988654322 11111111 69999999999999999999876
Q ss_pred Cc
Q psy7036 93 GE 94 (254)
Q Consensus 93 ~~ 94 (254)
+.
T Consensus 79 ~g 80 (95)
T cd05897 79 EG 80 (95)
T ss_pred CC
Confidence 54
No 204
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=7.1e-11 Score=70.64 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=50.4
Q ss_pred eeecCCCeEEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 122 RQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
..+.+|+.++|.|.+.. .+...+.|+|++..+.... .+ +.|.|.+++.+|+|.|+|.+.+..+.
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------~~-----~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------SN-----SNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------CC-----ceEEECccCHHHCEEEEEEEEeCCce
Confidence 35778999999999854 4566799999987653110 11 27999999999999999999998874
No 205
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.22 E-value=8.8e-11 Score=69.68 Aligned_cols=77 Identities=22% Similarity=0.299 Sum_probs=56.2
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc-
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE- 94 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~- 94 (254)
+...+.+|+++.|.|... +..+.+.|++++..+..+.+... ... .|.|.+++..|+|.|.|.+. ..|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~-s~~A~v~W~~ng~~l~~~~r~~~--~~~-------GLlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 4 KNRTVAPGADVVLPCQLR-SNLASPVWLFNGTPLNAQFSYRV--GTD-------GLLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred eEEEEecCCCEEEECCCC-CCCccEEEEECCcccCCCcceEE--eCC-------CCEEEECCHhhCEEEEEEEe-cCCCe
Confidence 456789999999999997 45779999999998865544322 222 37899999999999999987 3333
Q ss_pred -eEEEEEEEE
Q psy7036 95 -VAASINLNF 103 (254)
Q Consensus 95 -~~~~~~l~v 103 (254)
.-....|.|
T Consensus 73 ~~~~~y~l~v 82 (85)
T cd05872 73 QLVASYSLNV 82 (85)
T ss_pred EEEEEEEEEE
Confidence 333444444
No 206
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=2e-10 Score=68.78 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=50.6
Q ss_pred eEEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCC-cceEEEEEEeccCCCCCeEEEEEEEcCCCc--eEEEEE
Q psy7036 25 RLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT-NKYLVALELDDVIETDAGLYKVKAKNKMGE--VAASIN 100 (254)
Q Consensus 25 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~ 100 (254)
++.|.|.+.| .|.+.++|+++|..+..... ......++. ....+.|.|......|.|.|+|.+.|.... ...+++
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 3689999987 68889999999998754322 111111111 123457888888888899999999987644 334444
Q ss_pred E
Q psy7036 101 L 101 (254)
Q Consensus 101 l 101 (254)
|
T Consensus 80 l 80 (82)
T cd05759 80 L 80 (82)
T ss_pred E
Confidence 4
No 207
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.22 E-value=1.5e-10 Score=67.68 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=49.2
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
+.|+|...+ .|.+.++|||++..+..... ....+......+.|.|...+.+|.+.|+|++.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 789999854 79999999999999864321 1111111233447999999999999999999998765
No 208
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.22 E-value=8e-11 Score=71.28 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred CeeEe-CCCceeecCCCeEEEEEE-EeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEE
Q psy7036 9 PSFTQ-KPQLRQEDEGNRLIFECQ-LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYK 85 (254)
Q Consensus 9 p~~~~-~~~~~~v~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~ 85 (254)
|.|.. ..+.+.+.+|+.+.|.|. ..|.|.+.+.|++++...-.. ..++....++ .|.|.+++..|+| .|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G------nL~fs~v~~~D~g~~Y~ 75 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG------NLYFANVEEQDSHPDYI 75 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc------eEEEEEEehhhCCCCeE
Confidence 34433 346788999999999997 588999999999876542221 2233333333 7999999999999 899
Q ss_pred EEEEcCCC
Q psy7036 86 VKAKNKMG 93 (254)
Q Consensus 86 C~~~~~~~ 93 (254)
|.|.+...
T Consensus 76 C~a~~~~~ 83 (95)
T cd05845 76 CHAHFPGL 83 (95)
T ss_pred EEEEcccc
Confidence 99997653
No 209
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.21 E-value=8.5e-11 Score=71.32 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=55.7
Q ss_pred eeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc-CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 121 IRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
...+.+|+.+.|.|. ..+.|.+.+.|++++..+.. .+...+....+| .|.|.+++.+|+|.|.|.|.|.....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG-----NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC-----cEEEeecCHhhCceeEEEEEecccCC
Confidence 456778999999997 55788999999999875422 122334344455 79999999999999999999976544
No 210
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.21 E-value=2.3e-10 Score=64.76 Aligned_cols=63 Identities=27% Similarity=0.671 Sum_probs=49.3
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
+|+.+.|.|.+.+.+.+.+.|++++..+. ..... .... ..|.|.++..+|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~-~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNRL-SASG-----STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCEE-ecCC-----cEEEEeeCCcccCEEEEEEEecCCC
Confidence 47889999998888888999999988776 11111 1122 2799999999999999999998754
No 211
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.21 E-value=4.8e-10 Score=68.20 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=52.8
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEe--------eeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL--------SEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+.+.+.+|++++|+|.+.+.....+.|++-+..+ ..+.++..... . ....+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~--~--~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF--S--SNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC--C--CCEEEEEECcCCcccCEEEEEE
Confidence 4568899999999999987666778898766432 23344443321 1 2244799999999999999999
Q ss_pred EEcCC
Q psy7036 88 AKNKM 92 (254)
Q Consensus 88 ~~~~~ 92 (254)
+....
T Consensus 81 v~t~p 85 (95)
T cd05881 81 LYTDP 85 (95)
T ss_pred EEccc
Confidence 98543
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.20 E-value=2.4e-11 Score=69.21 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036 23 GNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKA 88 (254)
Q Consensus 23 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 88 (254)
|++++|.|.+ .+.+...+.|++++............ ... ......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~-~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS--TNS-VSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE--ETT-TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee--ccc-ceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 65778899999988754332221111 111 111114999999999999999986
No 213
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.19 E-value=1.1e-10 Score=77.49 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=56.8
Q ss_pred eEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEecc-CC-
Q psy7036 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PE- 249 (254)
Q Consensus 172 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~-p~- 249 (254)
++|.|.+++.+|+|.|.|.+.+..+.....+.|.+.. +|.+...+.......|+ .+.|.|.+.|. |.
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~----------~P~v~~~~~~~~~~~~~-~~~L~C~a~g~~P~~ 69 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE----------PPRVRLSLEKLVSMIEE-PQTLICHIAGYYPLD 69 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec----------CCceEEeCCCceeecCC-cEEEEEEECCCCCCC
Confidence 3799999999999999999999888888888888874 45555555444444677 89999999986 54
Q ss_pred CceeC
Q psy7036 250 PTISW 254 (254)
Q Consensus 250 p~~~W 254 (254)
+.|.|
T Consensus 70 ~~i~W 74 (139)
T cd05771 70 VQVEW 74 (139)
T ss_pred eEEEE
Confidence 37888
No 214
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.17 E-value=7e-10 Score=69.97 Aligned_cols=83 Identities=16% Similarity=0.314 Sum_probs=55.8
Q ss_pred CCCeEEEEEEEeeCC------CCceEEEeCC-----E-Eee--eC------CcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036 22 EGNRLIFECQLLCNP------KPDIVWFRGE-----T-QLS--ED------TRTVMKTTPIGTNKYLVALELDDVIETDA 81 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~------~~~v~W~~~~-----~-~~~--~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 81 (254)
.|++|+|.|.....+ ...+.|++.. . .+. .. ..+..+..........++|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999986542 5689999862 1 110 11 11111111111223456999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEe
Q psy7036 82 GLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 82 G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887777778888875
No 215
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.17 E-value=5.5e-10 Score=67.29 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=55.5
Q ss_pred CCeEEEEEEEeeCCC--CeEEEEECCEecccC---CcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036 127 GKRLLFECRIQADPA--PTVIWSHSGVQVKED---KRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201 (254)
Q Consensus 127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 201 (254)
|+.+.|.|.+.+.+. ..+.|...+...... ...+... .......+.|.|.+++.+|+|.|+|.|.|..+.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~-~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSL-QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccc-cccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 678999999987654 468998876543211 1000000 1112234689999999999999999999988877777
Q ss_pred EEEEEe
Q psy7036 202 ISLNFD 207 (254)
Q Consensus 202 ~~~~v~ 207 (254)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 777664
No 216
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.17 E-value=3.4e-10 Score=70.40 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=54.2
Q ss_pred eCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-----Eee---eC---------CcceEEEeecCCcceEEEEEEec
Q psy7036 13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-----QLS---ED---------TRTVMKTTPIGTNKYLVALELDD 75 (254)
Q Consensus 13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~---~~---------~~~~~~~~~~~~~~~~~~l~i~~ 75 (254)
+.+-+..+.+|++|.|.|.........++|||+.. .+. .. ...+.....+ ++|.|.+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n------gSL~I~~ 76 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN------GSLLIQN 76 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC------CcEEEec
Confidence 34445578899999999976544455899999632 110 00 1111212222 2899999
Q ss_pred cCCCCCeEEEEEEEcCCC-ceEEEEEEE
Q psy7036 76 VIETDAGLYKVKAKNKMG-EVAASINLN 102 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~~~~-~~~~~~~l~ 102 (254)
++.+|+|.|+|.+.+... .......|.
T Consensus 77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 77 VTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999999998763 344444443
No 217
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.14 E-value=1.5e-09 Score=68.41 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred CCCeEEEEEEEeeCC------------CCceEEEeC--CE---Eee---------eCCcceEEEeecCCcceEEEEEEec
Q psy7036 22 EGNRLIFECQLLCNP------------KPDIVWFRG--ET---QLS---------EDTRTVMKTTPIGTNKYLVALELDD 75 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~------------~~~v~W~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~ 75 (254)
.|++|+|.|...... .+.+.|+|- ++ .+. ...+.++...........++|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 458999984 21 111 1111122222211123455899999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 76 VIETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
++.+|+|.|+|.+.++....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666667777664
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.14 E-value=4.2e-10 Score=68.38 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=51.5
Q ss_pred eecCCCeEEEEEE-Eee----CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 123 QEDDGKRLLFECR-IQA----DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 123 ~~~~g~~~~l~C~-~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.+..|....|.|. ..+ .+.+.+.|||++..+...... +....+. ..|.|.++..+|+|.|+|.+.+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~-~~~~~~~----~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEK-FYSLKGS----TYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcc-eEecCCC----CEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 4556888999997 223 356789999999988644322 2221221 16999999999999999999998764
Q ss_pred c
Q psy7036 198 S 198 (254)
Q Consensus 198 ~ 198 (254)
.
T Consensus 81 ~ 81 (95)
T cd05897 81 K 81 (95)
T ss_pred E
Confidence 3
No 219
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.14 E-value=4.2e-10 Score=71.49 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=55.4
Q ss_pred EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE---E---ee--------eCCcceEEEeecCCcceEEEEEEeccC
Q psy7036 12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET---Q---LS--------EDTRTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~---~---~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
.+.|..+.+.+|++|+|.|.+.+.+...+.||+... . +. ...++.+... .....+.|.|.+++
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~ 78 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQ 78 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCC
Confidence 456778889999999999999876778899998431 1 10 1122222211 12345689999999
Q ss_pred CCCCeEEEEEEEcCC
Q psy7036 78 ETDAGLYKVKAKNKM 92 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~~ 92 (254)
.+|+|.|.|.+.+..
T Consensus 79 ~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 79 LSDSAVYFCALSESG 93 (109)
T ss_pred HHHCEEEEEEEecCC
Confidence 999999999998654
No 220
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.13 E-value=8.2e-10 Score=64.61 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 130 LLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 130 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
+.|.|... ++|++.+.||+++..+...... ..++. ...+.|.|...+.+|.+.|+|.|.|+.+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~----~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ----QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc----ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999965 5788999999999998653211 11222 334579999889999999999999988754
No 221
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.13 E-value=2.2e-09 Score=68.17 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCceeecCCCeEEEEEEEeeC----CCCceEEEe---------------CCEEee---eCCcceEEEeecCCcceEEEE
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCN----PKPDIVWFR---------------GETQLS---EDTRTVMKTTPIGTNKYLVAL 71 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~---------------~~~~~~---~~~~~~~~~~~~~~~~~~~~l 71 (254)
.+..+.+..|++++|.|..... +...++|.+ +|.... ...+.++....+. .....+|
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~daSI 82 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKDGSI 82 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCeeEE
Confidence 3456788999999999999653 345899932 233221 0111233222222 3455689
Q ss_pred EEeccCCCCCeEEEEEEEcCCC
Q psy7036 72 ELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 72 ~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
.|.+++.+|+|.|+|.+.|...
T Consensus 83 ~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 83 VIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EEccCCcccCEEEEEEEEcCCC
Confidence 9999999999999999998665
No 222
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.12 E-value=1.3e-09 Score=68.06 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCeEEEEEEEeeCC---CCceEEEeCCE--Eee--e-----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 23 GNRLIFECQLLCNP---KPDIVWFRGET--QLS--E-----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 23 g~~v~l~C~~~~~~---~~~v~W~~~~~--~~~--~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
|++|+|.|...+.. ...+.|++... .+. . ..+.++............+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986322 23688988541 110 0 001122221111223445899999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy7036 85 KVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 85 ~C~~~~~~~~~~~~~~l~v 103 (254)
+|.+.+..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776777777765
No 223
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.12 E-value=5.2e-09 Score=63.10 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=60.2
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+............. ...|.|.+++.+|.|.|.|.+.+..+....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 4566899999999998887889999998 77665333323222211 248999999999999999999988776665
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
.+.|.|
T Consensus 80 ~~~l~V 85 (86)
T smart00410 80 TTTLTV 85 (86)
T ss_pred EEEEEE
Confidence 555554
No 224
>smart00409 IG Immunoglobulin.
Probab=99.12 E-value=5.2e-09 Score=63.10 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=60.2
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
..+..|+.+.|.|.+.+.+.+.+.|+++ +..+............. ...|.|.+++.+|.|.|.|.+.+..+....
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~ 79 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSASS 79 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence 4566899999999998887889999998 77665333323222211 248999999999999999999988776665
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
.+.|.|
T Consensus 80 ~~~l~V 85 (86)
T smart00409 80 TTTLTV 85 (86)
T ss_pred EEEEEE
Confidence 555554
No 225
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.12 E-value=5e-10 Score=67.85 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=57.8
Q ss_pred CCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCce-eEEEEEEcCCC
Q psy7036 119 PSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG-KYKVTAKNELG 196 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~ 196 (254)
...+.+.+|+.+.|.|. ..+.|.|.+.|++++...... ..++....+| .|.|.++..+|.| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~-~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ-DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc-cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEcccc
Confidence 35677889999999997 689999999999876543332 3455555556 7999999999999 89999998754
Q ss_pred c
Q psy7036 197 E 197 (254)
Q Consensus 197 ~ 197 (254)
.
T Consensus 84 ~ 84 (95)
T cd05845 84 R 84 (95)
T ss_pred c
Confidence 3
No 226
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.11 E-value=7.1e-10 Score=66.16 Aligned_cols=71 Identities=24% Similarity=0.597 Sum_probs=53.9
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCC-cceE
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG-ESNA 200 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~-~~~~ 200 (254)
..+..|+.+.|.|.+.+.|...+.|++++..+..... .+.+..+..+|.|.|+|.+.+..+ ..+.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~ 74 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN--------------GLFIPNVSPEDSGNYTCRASNGSGSNTST 74 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS--------------EEEESSEEGGGTEEEEEEEEETTEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee--------------eeeeeeeccccCEEEEEEEEeCCCCeEee
Confidence 3467899999999999888899999998877652221 266678889999999999999654 3345
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
++.|.|
T Consensus 75 ~~~v~V 80 (80)
T PF13895_consen 75 SVNVTV 80 (80)
T ss_dssp EEEEEE
T ss_pred eEEeeC
Confidence 555543
No 227
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.11 E-value=5.5e-10 Score=63.54 Aligned_cols=63 Identities=30% Similarity=0.524 Sum_probs=45.4
Q ss_pred CCeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036 127 GKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191 (254)
Q Consensus 127 g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 191 (254)
|+.++|.|.+ .+.+...+.|++++............. +.......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST--NSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE--TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec--ccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 667778999999987654333222221 22211124999999999999999986
No 228
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.10 E-value=2.6e-09 Score=67.48 Aligned_cols=83 Identities=14% Similarity=0.368 Sum_probs=55.2
Q ss_pred CCCeEEEEEEEeeCC----------CCceEEEeCC--EEe----ee--------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036 22 EGNRLIFECQLLCNP----------KPDIVWFRGE--TQL----SE--------DTRTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~----------~~~v~W~~~~--~~~----~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
.|++|+|.|.....+ ...+.|||.. ... .. ..+.++...........++|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999996533 3569999852 111 01 11112222111223345689999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 78 ETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876667777888775
No 229
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.10 E-value=2.6e-09 Score=63.95 Aligned_cols=71 Identities=23% Similarity=0.409 Sum_probs=49.5
Q ss_pred EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcceEE
Q psy7036 130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201 (254)
Q Consensus 130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 201 (254)
+.|.|.+.+ .|.+.+.|++++..+....... ....++. ...+.|.|.....+|.|.|+|.|.|........
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~ 75 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSK-ELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE 75 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeee-eEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence 689999987 5778999999999875432211 1122222 234578888777888899999999987654333
No 230
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.09 E-value=2.4e-09 Score=67.59 Aligned_cols=81 Identities=15% Similarity=0.311 Sum_probs=54.8
Q ss_pred CCCeEEEEEEEeeCC------CCceEEEeCCE------E--eeeC--------CcceEEEeecCCcceEEEEEEeccCCC
Q psy7036 22 EGNRLIFECQLLCNP------KPDIVWFRGET------Q--LSED--------TRTVMKTTPIGTNKYLVALELDDVIET 79 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~------~~~v~W~~~~~------~--~~~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 79 (254)
.|++|+|.|.....+ ...+.|+|... . +... ...+.... ......++|.|.+++.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR--RAHDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec--CCCCCcEEEEEccCChH
Confidence 489999999986542 35699998531 1 1100 01112111 11123458999999999
Q ss_pred CCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 80 DAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 80 d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
|+|.|.|.+.+..+.....+.|.|.
T Consensus 79 DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 79 DYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred HCEEEEEEEEecccceEEEEEEEEE
Confidence 9999999999888888888888775
No 231
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.09 E-value=1.2e-09 Score=66.47 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceE------------EEcCCC-CceeeEEEEccCCCCCceeEE
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF------------SIDKDG-HSYFASLEIIDVTIEDAGKYK 188 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~l~i~~~~~~d~G~y~ 188 (254)
+.+..|+.++|.|...+.+.+.+.|+++++........++ ....++ ......|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 3466899999999998888889999977633211111111 111100 112347999999999999999
Q ss_pred EEEEcCCCc
Q psy7036 189 VTAKNELGE 197 (254)
Q Consensus 189 C~~~~~~~~ 197 (254)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999887554
No 232
>PHA03376 BARF1; Provisional
Probab=99.09 E-value=3.5e-09 Score=70.64 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=68.7
Q ss_pred eeeecCCCeEEEEEEEee---CCCCeEEEEECCE----ecc---c--------CCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036 121 IRQEDDGKRLLFECRIQA---DPAPTVIWSHSGV----QVK---E--------DKRHKFSIDKDGHSYFASLEIIDVTIE 182 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~----~~~---~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 182 (254)
.+....|+.+.|.|.... .....+.|+|.+. .+- . ..+.+.....+. ...+|.|.+++.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS 97 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS 97 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence 344557999999999652 2345799999432 110 0 001111111111 1248999999999
Q ss_pred CceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccCCCceeC
Q psy7036 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254 (254)
Q Consensus 183 d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p~~~W 254 (254)
|.|.|+|.+........+.-.+++.. +-.+...........-+ ...+.|.+.|+|.|.++|
T Consensus 98 DdGtY~C~fQkge~~~~k~ehLt~V~----------~~~Lsv~a~~~dFp~~~-~~~i~C~sggfP~P~~~W 158 (221)
T PHA03376 98 HDGNYLCRMKLGETEVTKQEHLSVVK----------PLTLSVHSERSQFPDFS-VLTVTCTVNAFPHPHVQW 158 (221)
T ss_pred CCceEEEEEEcCCCceeeeeeeeeee----------cceEEEEeccccCCCCC-eeEEEEecCCcCCchhee
Confidence 99999999987543332222222210 00111111111112244 789999988999999999
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.08 E-value=4.1e-10 Score=66.30 Aligned_cols=74 Identities=22% Similarity=0.444 Sum_probs=50.5
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
+|.+...+.......+. ++|.|.+.+.+ .+.++|+ +........ ........+.|.|.++..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~-------~~~~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSN-------SRGSSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEE-------EEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeee-------eeeccceeeEEEEccCCHHhCcEEEE
Confidence 47777777766555544 99999998765 8899999 111111110 11112233489999999999999999
Q ss_pred EEEc
Q psy7036 87 KAKN 90 (254)
Q Consensus 87 ~~~~ 90 (254)
.|.|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9976
No 234
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.08 E-value=3.5e-09 Score=65.34 Aligned_cols=84 Identities=15% Similarity=0.285 Sum_probs=53.6
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEec-c--c---CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV-K--E---DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
....+.+|+.+.|.|.+.+.+.+.+.|++.+..+ . . ....++....... ....|.|.+++.+|+|.|.|.+.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA-NELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC-CeeEEEEccCCcccCEEEEEEEec
Confidence 3456788999999999988888899998632211 0 0 0111222211111 123799999999999999999987
Q ss_pred CCCcceEEEEEE
Q psy7036 194 ELGESNATISLN 205 (254)
Q Consensus 194 ~~~~~~~~~~~~ 205 (254)
... ...+..|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 642 34444443
No 235
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.08 E-value=2.6e-09 Score=65.00 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=53.6
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCE--eccc--CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc-CCC
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGV--QVKE--DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN-ELG 196 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~-~~~ 196 (254)
+...+|+.+.|.|.. +.|.+.+.|++... .... ....+..... ..|.|.++..+|+|.|.|.+.+ ..+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~------~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE------RGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec------CeEEEeeCChhHCEEEEEEEEccCCe
Confidence 456689999999996 57888999998432 2111 0111222221 2699999999999999999985 555
Q ss_pred cceEEEEEEEe
Q psy7036 197 ESNATISLNFD 207 (254)
Q Consensus 197 ~~~~~~~~~v~ 207 (254)
.....++|.|.
T Consensus 79 ~~~~~~~l~v~ 89 (91)
T cd05871 79 QTLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEEe
Confidence 45556666654
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.07 E-value=9.1e-10 Score=67.21 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
.|.+...|.. .|.+|++|+|+|... .+...+.|+|+|........ ......+.+.|.+++.+|+|.|+|.
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~--------~~~~~~~~f~i~~v~~~~~G~Y~C~ 71 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP--------PEPQNKAKFFIPSMKREHAGRYRCY 71 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc--------CCCceeEEEEccCCChhHCEEEEEE
Confidence 5777777754 688999999999885 66778999999875432110 0112233799999999999999999
Q ss_pred EEcC
Q psy7036 88 AKNK 91 (254)
Q Consensus 88 ~~~~ 91 (254)
+.+.
T Consensus 72 ~~~~ 75 (91)
T cd05751 72 YRSG 75 (91)
T ss_pred EECC
Confidence 9875
No 237
>KOG3515|consensus
Probab=99.07 E-value=1.7e-09 Score=87.64 Aligned_cols=233 Identities=14% Similarity=0.197 Sum_probs=129.2
Q ss_pred CCCCCCeeEeCCCceeecCCCeEEEEEEEe--eCCCCceEEEeCCEEeeeCCc--ceEEEeecCCc-ceEEEEEEeccCC
Q psy7036 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLL--CNPKPDIVWFRGETQLSEDTR--TVMKTTPIGTN-KYLVALELDDVIE 78 (254)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~--~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~i~~~~~ 78 (254)
.+.++|.-...........+..+.+.|.+. +.|.+.++|+.++........ ........+.. ...+.+.+...+.
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk 172 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK 172 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence 344445433333344556788999999763 467889999998875543321 11111111111 2234688888889
Q ss_pred CCCeEEEEEEEcCCC---ceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecc
Q psy7036 79 TDAGLYKVKAKNKMG---EVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVK 154 (254)
Q Consensus 79 ~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~ 154 (254)
.+.|.|+|.+.+... ..-....+.|... ................+|..+.|.|.+. ++|.+.++|+++.....
T Consensus 173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~---~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAP---CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred cCCceeEcccccccCccccccceeEeecccc---cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 999999999998532 2223333443211 0111111222224567899999999754 57888999999887665
Q ss_pred cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCC
Q psy7036 155 EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234 (254)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g 234 (254)
... .+....++....+.+.+..-+.++.-...|.+.| .. ..+..+.+... +. . ....+.......|
T Consensus 250 ~~s--l~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~--~~~~~tav~~~--~~-----~--~~Ist~~~~ls~g 315 (741)
T KOG3515|consen 250 ESS--LLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LL--AASQITAVQVK--PT-----A--VPISTSDSGLSSG 315 (741)
T ss_pred hhh--cccCCCCCCcccccccccccccchhhhhhccccC-cc--ccceeeecccc--cc-----c--ccccCcccccccc
Confidence 431 1222223333333444444444445578899988 12 22222222211 00 0 1112222235667
Q ss_pred CCcEEEEEEEe-ccCCCceeC
Q psy7036 235 LNDIVIECRLV-GEPEPTISW 254 (254)
Q Consensus 235 ~~~~~l~C~~~-~~p~p~~~W 254 (254)
+ .+.+.|... ++|.+.+.|
T Consensus 316 ~-s~r~~c~~sss~p~~~i~w 335 (741)
T KOG3515|consen 316 R-SARSSCVSSSSKPPAHIAW 335 (741)
T ss_pred c-ccccceeccCCCCccceee
Confidence 7 889999885 457777887
No 238
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.03 E-value=2.3e-09 Score=68.08 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=53.0
Q ss_pred EeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCE--E---ee-----------eCCcceEEEeecCCcceEEEEEEec
Q psy7036 12 TQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET--Q---LS-----------EDTRTVMKTTPIGTNKYLVALELDD 75 (254)
Q Consensus 12 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~---~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~ 75 (254)
.+.|....+.+|++|+|.|.+.+ +...+.|||... . +. .....++..... ......|.|.+
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~ 78 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP--SLTRSSLTIKS 78 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc--CCCccEEEECC
Confidence 46777889999999999999976 667899998532 1 10 000111111111 11345899999
Q ss_pred cCCCCCeEEEEEEEcC
Q psy7036 76 VIETDAGLYKVKAKNK 91 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~~ 91 (254)
++.+|+|.|.|.+.+.
T Consensus 79 ~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 79 AEPEDSAVYLCASSLG 94 (110)
T ss_pred CChhhCEEEEEEeeCC
Confidence 9999999999998764
No 239
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.02 E-value=5e-09 Score=63.90 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=56.1
Q ss_pred eeecCCCeEEEEEEEee-----------CCCCeEEEEECCEecccCCc-----ceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036 122 RQEDDGKRLLFECRIQA-----------DPAPTVIWSHSGVQVKEDKR-----HKFSIDKDGHSYFASLEIIDVTIEDAG 185 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-----------~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G 185 (254)
..+.+|+.+.|.|.... .....+.|+|++........ .++..... .|.|.++..+|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~------~Lwf~Pa~~eDSG 83 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED------SIWFRPAELQDSG 83 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC------EEEEEeCChhhCe
Confidence 45778999999999511 11236999999755443221 23333333 7999999999999
Q ss_pred eEEEEEEcCCCcceEEEEEEE
Q psy7036 186 KYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 186 ~y~C~~~~~~~~~~~~~~~~v 206 (254)
.|+|.+.|.....+.++.|+|
T Consensus 84 ~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 84 LYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEEECCCCcceEEEEEEEC
Confidence 999999998877777766553
No 240
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=99.00 E-value=6.4e-09 Score=64.64 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=51.2
Q ss_pred CeEEEEEEEeeCC---CCceEEEeCCEE----e--e---------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 24 NRLIFECQLLCNP---KPDIVWFRGETQ----L--S---------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 24 ~~v~l~C~~~~~~---~~~v~W~~~~~~----~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
++|+|.|...... ...+.|+|.... + . ...+.++...... ....+|.|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS--LEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC--CCceEEEEccCCcccCEEEE
Confidence 5799999987543 347999985421 1 0 1111222222111 13458999999999999999
Q ss_pred EEEEc-CCCceEEEEEEEE
Q psy7036 86 VKAKN-KMGEVAASINLNF 103 (254)
Q Consensus 86 C~~~~-~~~~~~~~~~l~v 103 (254)
|.+.. ..|.....+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99874 5677777777776
No 241
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.98 E-value=2e-08 Score=59.02 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=52.3
Q ss_pred EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc-ceEEEEEEE
Q psy7036 130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNF 206 (254)
Q Consensus 130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~~~v 206 (254)
+.|.|.+.| .|.+.|.|++++..+...... ......++...++|.|..-..+|...|+|+|.|+.-. ...+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 689999776 678899999999998654221 1123344556678888766666666999999997643 244444544
No 242
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.98 E-value=1.3e-08 Score=63.86 Aligned_cols=83 Identities=17% Similarity=0.333 Sum_probs=55.9
Q ss_pred CCCeEEEEEEEeeCC-------CCceEEEeCC-----EEe------------eeCCcceEEEeecCCcceEEEEEEeccC
Q psy7036 22 EGNRLIFECQLLCNP-------KPDIVWFRGE-----TQL------------SEDTRTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 22 ~g~~v~l~C~~~~~~-------~~~v~W~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
.|++|+|.|...-.| .+.+.|.|.. ... ....+.+............++|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999965222 4689999741 111 1122233333333333456799999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 78 ETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999866566777777775
No 243
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.97 E-value=2e-08 Score=59.04 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=52.5
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEE
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNF 103 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 103 (254)
+.|.|.+.| .|.+.|+||+++..+...... .....++....++|.|..-..+|...|+|++.|..-. ......|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 689999976 688999999999988654221 1122334455668888766677777999999986532 344555554
No 244
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.96 E-value=9e-09 Score=63.16 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=48.7
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeee----------------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSE----------------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
|++|+|.|.........+.|+++...... ....+..... ..+|.|.+++.+|+|.|+|
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~l~~~DsG~Y~c 74 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP------NGSLLIQNLTKEDSGTYTL 74 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC------CceEEEccCCchhcEEEEE
Confidence 78999999987656668999986532110 0111122211 1389999999999999999
Q ss_pred EEEcCCCc-eEEEEEE
Q psy7036 87 KAKNKMGE-VAASINL 101 (254)
Q Consensus 87 ~~~~~~~~-~~~~~~l 101 (254)
.+....+. ....+.|
T Consensus 75 ~v~~~~~~~~~~~~~l 90 (92)
T cd05741 75 QIISTNGVTENAKFFL 90 (92)
T ss_pred EEEcCCCcEEEEEEEE
Confidence 99877643 3334443
No 245
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.95 E-value=2e-08 Score=64.07 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=50.5
Q ss_pred CCCceeecCCCeEEEEEEEeeCC----CCceEEEeC----CEE--e-ee--------CCcc--eEEEeecCCcceEEEEE
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRG----ETQ--L-SE--------DTRT--VMKTTPIGTNKYLVALE 72 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~--~-~~--------~~~~--~~~~~~~~~~~~~~~l~ 72 (254)
.+..+.+.+|++++|.|.....+ ...+.||+. +.. + .. ..++ ++.... ......++|.
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~ 82 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASIL 82 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEE
Confidence 45677899999999999986432 246999852 211 1 00 0111 111111 1123345899
Q ss_pred EeccCCCCCeEEEEEEEcCCC
Q psy7036 73 LDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 73 i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
|.+++.+|+|.|.|.+.+...
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 83 IWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred EeeCChhhCEEEEEEEEeCCC
Confidence 999999999999999997654
No 246
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.95 E-value=8.2e-09 Score=65.07 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=53.0
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCC-CCceEEEeCC--E---EeeeC-------CcceEEEeecCCcceEEEEEEeccC
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGE--T---QLSED-------TRTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~--~---~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
+.+.|....+.+|++|+|.|.+.+.. ...+.|||.. + .+... ...++... .......|.|.+++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~L~I~~~~ 79 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS---GSGTDFTLTISRVE 79 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe---ccCCEEEEEECCCC
Confidence 45678888999999999999997554 5679999742 1 11110 00111111 12234579999999
Q ss_pred CCCCeEEEEEEEcC
Q psy7036 78 ETDAGLYKVKAKNK 91 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~ 91 (254)
.+|+|.|.|.+.+.
T Consensus 80 ~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 80 PEDAAVYYCQQYGT 93 (106)
T ss_pred hHHCEEEEEEEeCC
Confidence 99999999998653
No 247
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.95 E-value=5.3e-09 Score=64.60 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=54.5
Q ss_pred cCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 21 DEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 21 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
..|+.++|.|.+.|. | ...++|+++|..+..... .......++.....+.|.+......|.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 478999999999986 5 468999999998865543 2333333444445557777777778999999999986643
No 248
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.93 E-value=5.9e-08 Score=59.08 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=50.1
Q ss_pred CeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecc------cCCcceEEEcC-CCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK------EDKRHKFSIDK-DGHSYFASLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~ 192 (254)
..+.+.+|+++.|.|.+.+.....+.|++.+..+. ...+.++.... ++.. .+|.|.+++.+|+|.|.|.+.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~--~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNE--LRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCE--EEEEECcCCcccCEEEEEEEE
Confidence 34678899999999999887666788887653321 01122333222 2332 379999999999999999997
Q ss_pred c
Q psy7036 193 N 193 (254)
Q Consensus 193 ~ 193 (254)
.
T Consensus 83 t 83 (95)
T cd05881 83 T 83 (95)
T ss_pred c
Confidence 5
No 249
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.93 E-value=9.5e-09 Score=63.47 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=51.8
Q ss_pred cCCCeEEEEEEEee-CCCCceEEEeCCEEeeeCC-------------cceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 21 DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDT-------------RTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 21 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
.+|++|+|.|.... .....+.|++....+.... ++.-+..- .....+|.|.+++.+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence 47999999998854 4456799998754321110 11111111 1123489999999999999999
Q ss_pred EEEcCCCce-EEEEEEEE
Q psy7036 87 KAKNKMGEV-AASINLNF 103 (254)
Q Consensus 87 ~~~~~~~~~-~~~~~l~v 103 (254)
.+.+..+.. ...+.|.|
T Consensus 79 ~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 79 EINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEcCCCCeEEEEEEEEe
Confidence 999776553 44555554
No 250
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.92 E-value=3.1e-08 Score=61.56 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=49.5
Q ss_pred eEEEEEEEeeCC---CCceEEEeCCE-----Ee---ee--------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 25 RLIFECQLLCNP---KPDIVWFRGET-----QL---SE--------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 25 ~v~l~C~~~~~~---~~~v~W~~~~~-----~~---~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
+|+|.|...... ...+.|+|... .+ .. ..+.+..+..+ .....++|.|.+++.+|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~-~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETP-NPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCC-CCCCceEEEEecCccccceEEE
Confidence 689999986443 44799998321 11 10 11122333221 1123457999999999999999
Q ss_pred EEEEc-CCCceEEEEEEEE
Q psy7036 86 VKAKN-KMGEVAASINLNF 103 (254)
Q Consensus 86 C~~~~-~~~~~~~~~~l~v 103 (254)
|.+.+ ..|..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99986 5566666666665
No 251
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.91 E-value=5.5e-08 Score=61.81 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=50.8
Q ss_pred CeeeecCCCeEEEEEEEeeCC----CCeEEEEE---------------CCEeccc---CCcceEEEcCCCCceeeEEEEc
Q psy7036 120 SIRQEDDGKRLLFECRIQADP----APTVIWSH---------------SGVQVKE---DKRHKFSIDKDGHSYFASLEII 177 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~---------------~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~ 177 (254)
..+.+..|+.+.|.|...... ...+.|.+ ++..... ....+.....+.....+++.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 345677899999999986532 34799943 2222210 0111222222222344689999
Q ss_pred cCCCCCceeEEEEEEcCCCcc
Q psy7036 178 DVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 178 ~~~~~d~G~y~C~~~~~~~~~ 198 (254)
+++.+|.|.|+|.+.|.-+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999976644
No 252
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.91 E-value=4.7e-08 Score=61.53 Aligned_cols=82 Identities=13% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeeCC-----------CCceEEEeC-----CE-----Ee----------eeCCcceEEEeecCCcceEEEE
Q psy7036 23 GNRLIFECQLLCNP-----------KPDIVWFRG-----ET-----QL----------SEDTRTVMKTTPIGTNKYLVAL 71 (254)
Q Consensus 23 g~~v~l~C~~~~~~-----------~~~v~W~~~-----~~-----~~----------~~~~~~~~~~~~~~~~~~~~~l 71 (254)
|++++|.|...-.| ...|.|++- +. .+ ....+.+..........+.++|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999996432 247999873 11 11 0112223333333333455799
Q ss_pred EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy7036 72 ELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104 (254)
Q Consensus 72 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 104 (254)
.|.+++.+|+|.|.|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999887777778888775
No 253
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.91 E-value=2.4e-08 Score=59.62 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
+.|.|.+.+ .|.+.++|+++++.+.... ........+.....+.|.+......+.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999976 5888999999999886432 1111111122233445666655566677999999987654
No 254
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.90 E-value=1.1e-08 Score=65.65 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=52.0
Q ss_pred EeCCCceeecCCCeEEEEEEEee--CCCCceEEEeCC--EE----e--ee---------CCcceEEEeecCCcceEEEEE
Q psy7036 12 TQKPQLRQEDEGNRLIFECQLLC--NPKPDIVWFRGE--TQ----L--SE---------DTRTVMKTTPIGTNKYLVALE 72 (254)
Q Consensus 12 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~----~--~~---------~~~~~~~~~~~~~~~~~~~l~ 72 (254)
.+.|..+.+.+|++|+|.|.+.+ .+...+.|||.. .. + .. ....++...... ......|.
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~ 80 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV-GKSTSTLT 80 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC-CCCEEEEE
Confidence 34567778999999999999976 567789999842 11 1 00 001112111111 11345899
Q ss_pred EeccCCCCCeEEEEEEEc
Q psy7036 73 LDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 73 i~~~~~~d~G~Y~C~~~~ 90 (254)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 81 IQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEECCHHHCEEEEEEEec
Confidence 999999999999999864
No 255
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.90 E-value=2.2e-08 Score=64.07 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=53.8
Q ss_pred eEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCE-----Eee--eC----------CcceEEEeecCCcceEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGET-----QLS--ED----------TRTVMKTTPIGTNKYLVALE 72 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~-----~~~--~~----------~~~~~~~~~~~~~~~~~~l~ 72 (254)
++..|..+.+.+|+++.|.|... ......+.|++... .+. .. ...+.....+ ......+|.
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~ 82 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN-GSQNNFSLT 82 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE-TTTTEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec-ccCCeEEEE
Confidence 44557788899999999999998 44566899998321 111 00 0011111111 113355899
Q ss_pred EeccCCCCCeEEEEEEEcC
Q psy7036 73 LDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 73 i~~~~~~d~G~Y~C~~~~~ 91 (254)
|.+++.+|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999876
No 256
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.89 E-value=2.8e-08 Score=63.66 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=50.4
Q ss_pred CCCceeecCCCeEEEEEEEeeCC----CCceEEEeCCE------Ee-ee---------CCcc--eEEEeecCCcceEEEE
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNP----KPDIVWFRGET------QL-SE---------DTRT--VMKTTPIGTNKYLVAL 71 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~------~~-~~---------~~~~--~~~~~~~~~~~~~~~l 71 (254)
.|..+.+.+|++|+|.|...... ...+.|++... .+ .. ..++ ++... .......++|
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~-~~~~~~~~sL 82 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV-GNPSRKDASI 82 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-cCCcCCeeEE
Confidence 46677889999999999986432 24699986321 11 00 0111 11111 1112234689
Q ss_pred EEeccCCCCCeEEEEEEEcCCC
Q psy7036 72 ELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 72 ~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
.|.+++.+|+|.|.|.+.+...
T Consensus 83 ~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 83 VIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EEeeCCcccCEEEEEEEEeCCC
Confidence 9999999999999999987654
No 257
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.89 E-value=2.8e-08 Score=60.94 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=52.6
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
.|.+...|. ..|.+|++|+|.|.... ....+.|||+|....... . .........+.+.|.+++..|+|.|.|.
T Consensus 1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~ 73 (94)
T cd05711 1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---L--YEKHHGGFQASFPLGPVTPAHAGTYRCY 73 (94)
T ss_pred CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---c--ccccCCeEEEEEEecCCCcccCEEEEEE
Confidence 366776664 46889999999998753 455799999887532110 0 0001123344799999999999999998
Q ss_pred EEc
Q psy7036 88 AKN 90 (254)
Q Consensus 88 ~~~ 90 (254)
...
T Consensus 74 ~~~ 76 (94)
T cd05711 74 GSY 76 (94)
T ss_pred EEC
Confidence 753
No 258
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.88 E-value=9.6e-09 Score=64.73 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=49.7
Q ss_pred eecCCCeEEEEEEEeeC-CCCceEEEeCCE-----Eee----------eCCcceEEEeecCCcceEEEEEEeccCCCCCe
Q psy7036 19 QEDEGNRLIFECQLLCN-PKPDIVWFRGET-----QLS----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAG 82 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 82 (254)
.+.+|++++|.|.+.+. +...+.|++... .+. .....+....... .....+|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS-SKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec-cCCEEEEEECCCCHHHCE
Confidence 57899999999999865 667899998432 110 0011122211111 124558999999999999
Q ss_pred EEEEEEEcCCC
Q psy7036 83 LYKVKAKNKMG 93 (254)
Q Consensus 83 ~Y~C~~~~~~~ 93 (254)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 259
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.88 E-value=3.9e-08 Score=58.68 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
++|+|.+.+ .|.+.|+|+++|+.+..... ......++ .....+.|.+......+...|+|++.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999977 58889999999998765432 22222221 2223456777666677778999999987643
No 260
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.87 E-value=2.9e-08 Score=61.82 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=51.3
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEe-----cc---cC---------CcceEEEcCCCCceeeEEEEccCCCCCc
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQ-----VK---ED---------KRHKFSIDKDGHSYFASLEIIDVTIEDA 184 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-----~~---~~---------~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 184 (254)
..+.+|+++.|.|.........+.|+|+... +. .. ...+.....++ +|.|.+++.+|+
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v~~~D~ 82 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNVTQKDT 82 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecCCcccC
Confidence 3566899999999754333448999996321 10 00 11122233333 799999999999
Q ss_pred eeEEEEEEcCCC-cceEEEEEE
Q psy7036 185 GKYKVTAKNELG-ESNATISLN 205 (254)
Q Consensus 185 G~y~C~~~~~~~-~~~~~~~~~ 205 (254)
|.|+|.+.+... ....++.+.
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEE
Confidence 999999998764 344555443
No 261
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.87 E-value=5.9e-08 Score=65.20 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=59.1
Q ss_pred ceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEee----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 17 LRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLS----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
.+.|.+|++|+|.|... +...+.++|+|..+.+. .+...++.. .......+.|+|.+++.+|+|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~--mS~s~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY--LSKSFNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE--eccCCCcceEEEEeCChhhCeEEE
Confidence 45789999999999984 55677899999643221 111112211 111122348999999999999999
Q ss_pred EEEEc-CCC-ceEEEEEEEEec
Q psy7036 86 VKAKN-KMG-EVAASINLNFSR 105 (254)
Q Consensus 86 C~~~~-~~~-~~~~~~~l~v~~ 105 (254)
|.+.. ..| ..+....|.|..
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEc
Confidence 98874 445 677788888864
No 262
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=2.7e-08 Score=59.08 Aligned_cols=63 Identities=19% Similarity=0.538 Sum_probs=50.1
Q ss_pred eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 192 (254)
...+..|.++.|.|...+. .+.+.|++++..+..+ .++.....+ |.|..++.+|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~--~r~~~~~~G------LlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ--FSYRVGTDG------LLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC--cceEEeCCC------CEEEECCHhhCEEEEEEEe
Confidence 3567789999999998665 6699999999987643 344444443 7799999999999999987
No 263
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.87 E-value=5.7e-08 Score=61.25 Aligned_cols=81 Identities=23% Similarity=0.464 Sum_probs=53.8
Q ss_pred CCCeEEEEEEEeeCC------CCeEEEEECC-----E-eccc--CCc--------ceEEEcCCCCceeeEEEEccCCCCC
Q psy7036 126 DGKRLLFECRIQADP------APTVIWSHSG-----V-QVKE--DKR--------HKFSIDKDGHSYFASLEIIDVTIED 183 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~------~~~~~W~~~~-----~-~~~~--~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d 183 (254)
.|++++|.|.....+ ...+.|++.. . .+.. ... .++... ......++|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 378999999987543 4579999862 1 1110 000 011110 111234689999999999
Q ss_pred ceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 184 AGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 184 ~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
+|.|.|.+.+..+.....+.|.|.
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEE
Confidence 999999999877767778877775
No 264
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.86 E-value=3.6e-08 Score=60.97 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=50.5
Q ss_pred CCeEEEEEEEeeCCC-CceEEEeCCE----Eee-e----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 23 GNRLIFECQLLCNPK-PDIVWFRGET----QLS-E----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 23 g~~v~l~C~~~~~~~-~~v~W~~~~~----~~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
|++|+|.|....... ..+.|+|... .+. . ....+... .......++|.|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSI--TSLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEE--cCCCCCccEEEEeCCceeeeEEEEE
Confidence 789999999754332 3699998532 110 0 00111111 1122334589999999999999999
Q ss_pred EEE-cCCCceEEEEEEEE
Q psy7036 87 KAK-NKMGEVAASINLNF 103 (254)
Q Consensus 87 ~~~-~~~~~~~~~~~l~v 103 (254)
.+. ...|.....+.|+|
T Consensus 79 ~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEeCCCCCeeeEEEEEE
Confidence 987 45566777777776
No 265
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.85 E-value=8.7e-08 Score=59.02 Aligned_cols=77 Identities=14% Similarity=0.293 Sum_probs=49.7
Q ss_pred eEEEEEEEee-CC---CCceEEEeCC--E--Ee--ee---------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 25 RLIFECQLLC-NP---KPDIVWFRGE--T--QL--SE---------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 25 ~v~l~C~~~~-~~---~~~v~W~~~~--~--~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
+|+|.|.... .+ ..+|+|.+.. . .+ .. ..+.++... ......++|.|.+++.+|+|.|+
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~--~~~~~daSi~i~nl~~~D~G~Y~ 79 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK--NPSFEDGTISLSRLELEDEGVYI 79 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc--CCCCCcceEEEcCCccccCEEEE
Confidence 6899999963 22 1269998742 1 11 00 111222222 11123458999999999999999
Q ss_pred EEEEc-CCCceEEEEEEEE
Q psy7036 86 VKAKN-KMGEVAASINLNF 103 (254)
Q Consensus 86 C~~~~-~~~~~~~~~~l~v 103 (254)
|.+.+ ..|..+..+.|.|
T Consensus 80 C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 80 CEFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEEeCCCCCeEEEEEEEE
Confidence 99998 6677777777776
No 266
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.84 E-value=2.7e-08 Score=59.24 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=46.4
Q ss_pred EEEEEEEee-CCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 26 LIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 26 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
++|.|.+.| .|...++|+|+|..+............++.....+.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999977 677899999999987543322222222222334557777755566777999999876543
No 267
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.84 E-value=1.1e-07 Score=59.98 Aligned_cols=82 Identities=21% Similarity=0.383 Sum_probs=53.5
Q ss_pred CCCeEEEEEEEeeCC------------CCeEEEEECCE----e-c---------ccCCcceEEEcCC-CCceeeEEEEcc
Q psy7036 126 DGKRLLFECRIQADP------------APTVIWSHSGV----Q-V---------KEDKRHKFSIDKD-GHSYFASLEIID 178 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~------------~~~~~W~~~~~----~-~---------~~~~~~~~~~~~~-~~~~~~~l~i~~ 178 (254)
.|++++|.|...... .+.+.|+|... . + ......++..... .....++|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999976432 35799998421 1 1 0111113332210 011235899999
Q ss_pred CCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 179 VTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 179 ~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
++.+|+|.|+|.+.+........+.|.|+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777777777765
No 268
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.83 E-value=7.7e-08 Score=58.91 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=52.5
Q ss_pred eEeCCCceeecCCCeEEEEEEEee-CCCCc--eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLC-NPKPD--IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+...+....+.+|+.++|+|.+.| .|.+. +.|||++..+....... ..........++.+...+.+|...|+|+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 344444556789999999999976 56665 79999999885432110 1111222344677765544445599999
Q ss_pred EEcCCCc
Q psy7036 88 AKNKMGE 94 (254)
Q Consensus 88 ~~~~~~~ 94 (254)
+.+..+.
T Consensus 81 A~l~l~~ 87 (100)
T cd05755 81 TELDLRP 87 (100)
T ss_pred EEeccCc
Confidence 9876544
No 269
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.83 E-value=5.8e-08 Score=57.95 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=45.4
Q ss_pred EEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCC--ceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 130 LLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGH--SYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 130 ~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
+.|.|.+.+. |.+.+.|++++..+.... ......++. ...+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 6899998764 788999999999886433 122222222 234566666555666679999999986543
No 270
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.82 E-value=3.7e-08 Score=60.81 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=52.2
Q ss_pred cCCCeEEEEEEEeeC-CC-CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 125 DDGKRLLFECRIQAD-PA-PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 125 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
..|..+.|.|.+.++ |. ..+.|+++|..+..... .......++ +...+.|.+......+.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 358899999999997 53 57999999998865543 222222232 244567777777777999999999987654
No 271
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.82 E-value=7.7e-08 Score=61.03 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=51.9
Q ss_pred CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEe------ccc------CCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQ------VKE------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 186 (254)
+..+.+.+|++++|.|.+.+.+...+.|++.... +.. ....++....+.......|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 3456788999999999988777778999985321 000 0112222221111123589999999999999
Q ss_pred EEEEEEcCC
Q psy7036 187 YKVTAKNEL 195 (254)
Q Consensus 187 y~C~~~~~~ 195 (254)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998754
No 272
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.81 E-value=1.6e-07 Score=59.23 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=53.9
Q ss_pred CCCeEEEEEEEeeCC------CCeEEEEECCEe-------c-cc--------CCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036 126 DGKRLLFECRIQADP------APTVIWSHSGVQ-------V-KE--------DKRHKFSIDKDGHSYFASLEIIDVTIED 183 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~------~~~~~W~~~~~~-------~-~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d 183 (254)
.|++++|.|.....| ...+.|+|.... + .. ....++..... ....++|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 378999999976553 346999985311 0 00 00112222111 1123589999999999
Q ss_pred ceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 184 AGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 184 ~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
+|.|.|.+.+..+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEE
Confidence 999999999988888888877775
No 273
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.79 E-value=1.5e-07 Score=56.19 Aligned_cols=68 Identities=15% Similarity=0.300 Sum_probs=47.8
Q ss_pred EEEEEEEeeC-CCCeEEEEECCEecccCCcceEEEcCCCCce--eeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 130 LLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY--FASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 130 ~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
+.|.|.+.+. |.+.|+|+++|..+..... ......++..+ .+.|.+.....++...|+|.+.++....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899998875 7889999999998865432 23333333233 4667776666777789999999987543
No 274
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.78 E-value=5.4e-08 Score=62.42 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=52.2
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeC-CCCceEEEeCC--EE---eee-------CCcceEEEeecCCcceEEEEEEeccC
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGE--TQ---LSE-------DTRTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~---~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
+.+.|..+.+.+|++|+|.|..... ....+.|||.. .. +.. ....++..... ......+|.|.+++
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~I~~~~ 80 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ-KAQKSISLTISALQ 80 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe-ccCCEEEEEECCCC
Confidence 4567778889999999999998653 45679999832 11 110 11112221111 11224589999999
Q ss_pred CCCCeEEEEEEEc
Q psy7036 78 ETDAGLYKVKAKN 90 (254)
Q Consensus 78 ~~d~G~Y~C~~~~ 90 (254)
.+|+|.|.|.+..
T Consensus 81 ~~Dsg~Y~C~~~~ 93 (116)
T cd07706 81 LEDSAKYFCALST 93 (116)
T ss_pred HHHCEEEEEEEEC
Confidence 9999999999874
No 275
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.78 E-value=1.6e-07 Score=58.35 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=49.8
Q ss_pred CeEEEEEEEeeCC---CCeEEEEECCEe----c-----------ccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036 128 KRLLFECRIQADP---APTVIWSHSGVQ----V-----------KEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189 (254)
Q Consensus 128 ~~~~l~C~~~~~~---~~~~~W~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 189 (254)
++++|.|...... ...+.|+|.... + ......+.....+. ...++|.|.+++.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~sL~I~~v~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS-LEDATISISNLRLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC-CCceEEEEccCCcccCEEEEE
Confidence 4689999987654 336999986431 0 00011122211111 123589999999999999999
Q ss_pred EEEc-CCCcceEEEEEEE
Q psy7036 190 TAKN-ELGESNATISLNF 206 (254)
Q Consensus 190 ~~~~-~~~~~~~~~~~~v 206 (254)
.+.. +.|.....+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 5677777777765
No 276
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.76 E-value=1.6e-07 Score=57.38 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=51.3
Q ss_pred CeEEEEEEEeeC-CCCceEEEeCC----EEee-----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 24 NRLIFECQLLCN-PKPDIVWFRGE----TQLS-----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 24 ~~v~l~C~~~~~-~~~~v~W~~~~----~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
++++|.|..... ...+|+|.|-. ..+. .....++.... .....++|.|.+++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCCccEEEEeCCCccccEEEEEE
Confidence 468999998642 34579998742 1121 01112232221 222345899999999999999999
Q ss_pred EE-cCCCceEEEEEEEE
Q psy7036 88 AK-NKMGEVAASINLNF 103 (254)
Q Consensus 88 ~~-~~~~~~~~~~~l~v 103 (254)
+. ...|...++..|.|
T Consensus 79 v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 79 AVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEeCCCCCeeEEEEEEE
Confidence 86 46678888888876
No 277
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.76 E-value=1.3e-08 Score=59.82 Aligned_cols=57 Identities=26% Similarity=0.447 Sum_probs=39.4
Q ss_pred EEEEEEEeeCC-CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 130 LLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 130 ~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
+.|.|.+.+.+ .+.+.|+ +.... ............+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~------~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPS------FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEE------EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCc------eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999998877 7789999 11110 0011111112235899999999999999999986
No 278
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.76 E-value=5.7e-08 Score=60.21 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=55.7
Q ss_pred CCeeEeC-CCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 8 APSFTQK-PQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 8 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
+|.+... |.......++.++|.|.+.| .| ...|+|++||+.+..... .......++.....+.|.+......+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 3555443 33334457888999999988 45 568999999998753321 12222234444455567676666666789
Q ss_pred EEEEEEcCCC
Q psy7036 84 YKVKAKNKMG 93 (254)
Q Consensus 84 Y~C~~~~~~~ 93 (254)
|+|.+.+...
T Consensus 81 ~sC~V~H~~l 90 (100)
T cd07699 81 YTCEVTHEGL 90 (100)
T ss_pred EEEEEEecCC
Confidence 9999987653
No 279
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.75 E-value=7.7e-08 Score=58.68 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=48.0
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
..+..|++++|.|... .+...+.|+|+|....... . ......+.+.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-----~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-----P--PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-----c--CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3567899999999874 6667899999987533211 0 01112247999999999999999999886
No 280
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.75 E-value=3.6e-07 Score=57.78 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=53.5
Q ss_pred CCCeEEEEEEEeeCC----------CCeEEEEECC--Eec------------ccCCcceEEEcCC-CCceeeEEEEccCC
Q psy7036 126 DGKRLLFECRIQADP----------APTVIWSHSG--VQV------------KEDKRHKFSIDKD-GHSYFASLEIIDVT 180 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~----------~~~~~W~~~~--~~~------------~~~~~~~~~~~~~-~~~~~~~l~i~~~~ 180 (254)
.|++++|.|.....+ ...+.|+|.. +.. ......++....+ .....++|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999986543 2569999852 111 0011112222111 11223589999999
Q ss_pred CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 181 IEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 181 ~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
.+|+|.|.|.+..........+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876667777777775
No 281
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.75 E-value=2.7e-07 Score=57.29 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=29.7
Q ss_pred eeEEEEccCCCCCceeEEEEEEc-CCCcceEEEEEEE
Q psy7036 171 FASLEIIDVTIEDAGKYKVTAKN-ELGESNATISLNF 206 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~~v 206 (254)
.++|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 35799999999999999999997 6776666666655
No 282
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.74 E-value=2.4e-07 Score=54.40 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=51.1
Q ss_pred eeecCCCeEEEEEEEeeCC--CCceEEEeCCEEeee-CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 18 RQEDEGNRLIFECQLLCNP--KPDIVWFRGETQLSE-DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
..+..|++++|+|.....+ .+.++|+..+..... ... .. .+|.+.+++..|+|.++|.+....-.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~---------~~---ktL~~~qv~~qdSG~WtC~V~~~~k~ 76 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQ---------DK---KTLNLVQLGPNDSGTWDCIVSVNSSE 76 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccC---------Cc---cEEEeceeCcccCCEEEEEEEECceE
Confidence 3678999999999995533 459999975443221 111 01 17999999999999999999755433
Q ss_pred eEEEEEEEEe
Q psy7036 95 VAASINLNFS 104 (254)
Q Consensus 95 ~~~~~~l~v~ 104 (254)
....+.+.|.
T Consensus 77 ~~~~~~V~Vl 86 (88)
T cd07694 77 KTLKLDIKVL 86 (88)
T ss_pred EEEEeeEEEE
Confidence 4445555553
No 283
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.74 E-value=3.9e-07 Score=58.64 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=50.5
Q ss_pred eCCCceeecCCCeEEEEEEEeeCC------CCceEEEeCCE------Eee--e-------CCcceEEEeecCCcceEEEE
Q psy7036 13 QKPQLRQEDEGNRLIFECQLLCNP------KPDIVWFRGET------QLS--E-------DTRTVMKTTPIGTNKYLVAL 71 (254)
Q Consensus 13 ~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~------~~~--~-------~~~~~~~~~~~~~~~~~~~l 71 (254)
+.|+.+.+.+|++|+|.|...... ...+.||+... .+. . ..+.++.... ......++|
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~-~~~~~~~sL 82 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG-DLGKKNCSL 82 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec-CCCCCEEEE
Confidence 456778899999999999875221 34589998532 111 0 0001111110 123445689
Q ss_pred EEeccCCCCCeEEEEEEEcC
Q psy7036 72 ELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 72 ~i~~~~~~d~G~Y~C~~~~~ 91 (254)
.|.+++..|+|.|.|.+...
T Consensus 83 ~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 83 LISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEccCChhhCeEEEEEEEcC
Confidence 99999999999999998754
No 284
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.73 E-value=2.4e-07 Score=57.72 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=29.9
Q ss_pred eEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 172 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
++|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 58999999999999999999987776666766665
No 285
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.73 E-value=1.9e-07 Score=56.82 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=51.3
Q ss_pred CeeEeCCCceeecCCCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 9 PSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 9 p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
|.|......... +|+.+.|+|.+. +.|.+.++|+.++..+.............+.....+.|.+..-...+...++|.
T Consensus 1 p~I~~~~~~~~~-~~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~ 79 (89)
T PF08205_consen 1 PEITPNPSLLEG-EGEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR 79 (89)
T ss_dssp EEEEEECSEEES-STEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred CEeeCCCeeEcc-cceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence 445444433333 378999999885 489999999999987722111111111222223345677765555667799999
Q ss_pred EEcCCCc
Q psy7036 88 AKNKMGE 94 (254)
Q Consensus 88 ~~~~~~~ 94 (254)
+.+....
T Consensus 80 ~~~~~~~ 86 (89)
T PF08205_consen 80 ASHPALS 86 (89)
T ss_dssp EEETTCC
T ss_pred EECCccC
Confidence 9987643
No 286
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.73 E-value=1.4e-07 Score=57.78 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEeccc----------------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKE----------------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 190 (254)
|++++|.|.........+.|+++...... ....++....+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence 67899999877655667999986533210 01112223233 3799999999999999999
Q ss_pred EEcCCCc
Q psy7036 191 AKNELGE 197 (254)
Q Consensus 191 ~~~~~~~ 197 (254)
+....+.
T Consensus 76 v~~~~~~ 82 (92)
T cd05741 76 IISTNGV 82 (92)
T ss_pred EEcCCCc
Confidence 9887643
No 287
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.70 E-value=6.3e-07 Score=55.23 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=31.6
Q ss_pred eeEEEEccCCCCCceeEEEEEEc-CCCcceEEEEEEE
Q psy7036 171 FASLEIIDVTIEDAGKYKVTAKN-ELGESNATISLNF 206 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~~v 206 (254)
.++|.|.+++.+|+|.|+|.+.+ +.|+.+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 36899999999999999999999 7888788877776
No 288
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.69 E-value=8.5e-08 Score=59.49 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=45.7
Q ss_pred eecCCCeEEEEEEEeeC--CCCceEEEeCCE--E---ee-e------CCcceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 19 QEDEGNRLIFECQLLCN--PKPDIVWFRGET--Q---LS-E------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~---~~-~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
.+.+|++|+|.|...+. ....+.||+... . +. . ....++.... ......|.|.+++.+|+|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~---~~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK---SGNTASLTISGAQTEDEADY 78 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc---cCCEEEEEECCCChhhCEEE
Confidence 47799999999998654 456799997431 1 11 0 0011121111 12345799999999999999
Q ss_pred EEEEEc
Q psy7036 85 KVKAKN 90 (254)
Q Consensus 85 ~C~~~~ 90 (254)
.|.+.+
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 998874
No 289
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.68 E-value=5.9e-07 Score=57.30 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=48.7
Q ss_pred CeeeecCCCeEEEEEEEeeCC----CCeEEEEEC----CEe--cc---c------CCc--ceEEEcCCCCceeeEEEEcc
Q psy7036 120 SIRQEDDGKRLLFECRIQADP----APTVIWSHS----GVQ--VK---E------DKR--HKFSIDKDGHSYFASLEIID 178 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----~~~--~~---~------~~~--~~~~~~~~~~~~~~~l~i~~ 178 (254)
..+.+..|++++|.|.....+ ...+.|++. +.. +. . ... .+.....+.....++|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 456778899999999976433 235999752 111 10 0 000 11111111112235799999
Q ss_pred CCCCCceeEEEEEEcCCCc
Q psy7036 179 VTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 179 ~~~~d~G~y~C~~~~~~~~ 197 (254)
++.+|+|.|+|.+.|....
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999986654
No 290
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.66 E-value=2.7e-07 Score=58.53 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=50.3
Q ss_pred CCeeeecCCCeEEEEEEEeeCCCCeEEEEECCE--ecc--------------cCCcceEEEcCCCCceeeEEEEccCCCC
Q psy7036 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGV--QVK--------------EDKRHKFSIDKDGHSYFASLEIIDVTIE 182 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 182 (254)
+..+.+.+|+.++|.|...+ +...+.|||... ... .....++....+.. ....|.|.+++.+
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~L~I~~~~~~ 82 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSL-TRSSLTIKSAEPE 82 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCC-CccEEEECCCChh
Confidence 44567889999999999877 667899998532 110 00111222222211 2247999999999
Q ss_pred CceeEEEEEEcCC
Q psy7036 183 DAGKYKVTAKNEL 195 (254)
Q Consensus 183 d~G~y~C~~~~~~ 195 (254)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998643
No 291
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.65 E-value=8.9e-07 Score=55.63 Aligned_cols=81 Identities=20% Similarity=0.395 Sum_probs=52.5
Q ss_pred CCeEEEEEEEeeCC-------CCeEEEEECC-----Eec------------ccCCcceEEEcC-CCCceeeEEEEccCCC
Q psy7036 127 GKRLLFECRIQADP-------APTVIWSHSG-----VQV------------KEDKRHKFSIDK-DGHSYFASLEIIDVTI 181 (254)
Q Consensus 127 g~~~~l~C~~~~~~-------~~~~~W~~~~-----~~~------------~~~~~~~~~~~~-~~~~~~~~l~i~~~~~ 181 (254)
|.+++|.|...-.| .+.+.|.+.. ... ......+..... ......++|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999965332 3578998741 110 011111222222 1122457999999999
Q ss_pred CCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 182 EDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 182 ~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
+|+|.|.|.+..........+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876666777777765
No 292
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.65 E-value=2.2e-07 Score=57.40 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=50.0
Q ss_pred CCCeEEEEEEEee-CCCCeEEEEECCEecccCC-------------c--ceEEEcCCCCceeeEEEEccCCCCCceeEEE
Q psy7036 126 DGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDK-------------R--HKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189 (254)
Q Consensus 126 ~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 189 (254)
.|++|+|.|.... .....+.|++....+.... . .++....+ ..+|.|.+++.+|+|.|.|
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~----~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQN----DYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCC----ceeEEECCCchHHCEEEEE
Confidence 5899999998654 3345699998643221110 0 11222121 2479999999999999999
Q ss_pred EEEcCCCcc-eEEEEEEE
Q psy7036 190 TAKNELGES-NATISLNF 206 (254)
Q Consensus 190 ~~~~~~~~~-~~~~~~~v 206 (254)
.+.+..+.. ...+.|.|
T Consensus 79 ~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 79 EINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEcCCCCeEEEEEEEEe
Confidence 999877654 44555544
No 293
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.65 E-value=9.4e-07 Score=55.66 Aligned_cols=73 Identities=12% Similarity=0.276 Sum_probs=46.7
Q ss_pred eecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCe-EEEEEEEcCCC
Q psy7036 19 QEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAG-LYKVKAKNKMG 93 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~ 93 (254)
.+..|+.++|.|.+.| .| ...++|+|||+.+..... ......++ .....+.|.+.. ...|.| .|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 4557888999999988 45 468999999999864322 22222221 233344566664 344444 69999998653
No 294
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.65 E-value=4.2e-07 Score=55.67 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=48.0
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEeeC-CC-CceEEEeCCEEeeeCC-cceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PK-PDIVWFRGETQLSEDT-RTVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
+|.+.+.+.... |+.++|.|.+.|. |. ..++|+++++.+.... ........++.....+.|.|. ..+.+.|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~---~~~~~~y 75 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP---PEDKARY 75 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC---CCCCCEE
Confidence 466655444322 7889999999984 54 4899999996433221 112222222222333345444 4478999
Q ss_pred EEEEEcCCC
Q psy7036 85 KVKAKNKMG 93 (254)
Q Consensus 85 ~C~~~~~~~ 93 (254)
+|.+.+...
T Consensus 76 tC~V~H~~~ 84 (93)
T cd07698 76 SCRVEHSGL 84 (93)
T ss_pred EEEEEeCCC
Confidence 999987653
No 295
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.64 E-value=2.5e-07 Score=58.23 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=49.1
Q ss_pred eecCCCeEEEEEEEeeC-CCCeEEEEECCEe-----cc----------cCCcceEEEcCCCCceeeEEEEccCCCCCcee
Q psy7036 123 QEDDGKRLLFECRIQAD-PAPTVIWSHSGVQ-----VK----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~-----~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 186 (254)
.+..|+.++|.|..... +...+.|++.... +. .....++....+......+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 35689999999998876 5668999985321 10 01111222222211123489999999999999
Q ss_pred EEEEEEcCCC
Q psy7036 187 YKVTAKNELG 196 (254)
Q Consensus 187 y~C~~~~~~~ 196 (254)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987664
No 296
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.64 E-value=2e-07 Score=57.86 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=48.4
Q ss_pred eeecCCCeEEEEEEEee-CCCCceEEEeCCE-----Eee------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 18 RQEDEGNRLIFECQLLC-NPKPDIVWFRGET-----QLS------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
+.+.+|++|+|.|.... .....+.|+|... .+. .....++.... ........|.|.+++.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~-~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD-DPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe-cCCCCEEEEEEcCCCHHHCEEEE
Confidence 35789999999999864 3456789998542 110 01111222211 12234558999999999999999
Q ss_pred EEEEcCC
Q psy7036 86 VKAKNKM 92 (254)
Q Consensus 86 C~~~~~~ 92 (254)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9987543
No 297
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.63 E-value=4.6e-07 Score=53.03 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=45.1
Q ss_pred eEEEEEEEeeC-CC-CceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 25 RLIFECQLLCN-PK-PDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 25 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
.++|.|.+.|. |. ..++|+|||+.+..... .......++.....+.|.|......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999884 54 68999999987433211 11222234444455567776666777889999998654
No 298
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.62 E-value=1.7e-06 Score=54.54 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=32.7
Q ss_pred eeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
.++|.|.+++.+|.|.|+|.+.+........+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 4689999999999999999999888777888888775
No 299
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.62 E-value=8.2e-07 Score=54.89 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=49.6
Q ss_pred CCeEEEEEEEeeCCCC-eEEEEECCEe----cc-----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036 127 GKRLLFECRIQADPAP-TVIWSHSGVQ----VK-----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~-~~~W~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 190 (254)
|++++|.|........ .+.|+|.... +. .....+..... .....++|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITS-LGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcC-CCCCccEEEEeCCceeeeEEEEEE
Confidence 6789999986544332 5999984321 10 00011111111 112346899999999999999999
Q ss_pred EE-cCCCcceEEEEEEE
Q psy7036 191 AK-NELGESNATISLNF 206 (254)
Q Consensus 191 ~~-~~~~~~~~~~~~~v 206 (254)
+. .+.|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 87 46677777777765
No 300
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.61 E-value=7.2e-07 Score=54.44 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=47.3
Q ss_pred ecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 20 EDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 20 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
...++.++|.|.+.| .| ...|+|+++|..+... .........++.....+.|.+......+...|+|.|.+...
T Consensus 11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 335667999999988 45 4689999999986332 11122222333334455666665545567799999987653
No 301
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.60 E-value=1.2e-06 Score=56.06 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=48.3
Q ss_pred CeeeecCCCeEEEEEEEeeCC----CCeEEEEECCE------ecc-c---------CCc--ceEEEcCCCCceeeEEEEc
Q psy7036 120 SIRQEDDGKRLLFECRIQADP----APTVIWSHSGV------QVK-E---------DKR--HKFSIDKDGHSYFASLEII 177 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~------~~~-~---------~~~--~~~~~~~~~~~~~~~l~i~ 177 (254)
..+.+..|+.++|.|...... ...+.|++... .+. . ... .++....+.....++|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 455677899999999976432 24599986321 110 0 000 1111111111223589999
Q ss_pred cCCCCCceeEEEEEEcCCCc
Q psy7036 178 DVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 178 ~~~~~d~G~y~C~~~~~~~~ 197 (254)
+++.+|+|.|.|.+.|....
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eCCcccCEEEEEEEEeCCCC
Confidence 99999999999999986553
No 302
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.59 E-value=1.3e-06 Score=53.36 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=48.9
Q ss_pred eEEEEEEEeeCC-CCeEEEEECCE----ecc-----------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036 129 RLLFECRIQADP-APTVIWSHSGV----QVK-----------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 129 ~~~l~C~~~~~~-~~~~~W~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 192 (254)
+++|.|.....+ ...+.|.|... .+. .....+.... +.....++|.|.+++.+|+|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEEE
Confidence 578999976433 23689987421 111 0111122221 111224589999999999999999976
Q ss_pred -cCCCcceEEEEEEE
Q psy7036 193 -NELGESNATISLNF 206 (254)
Q Consensus 193 -~~~~~~~~~~~~~v 206 (254)
.+.|+.+.+..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57788888887776
No 303
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.58 E-value=8.1e-07 Score=52.94 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=45.1
Q ss_pred EEEEEEEee-CCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 130 LLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 130 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
++|.|.+.+ +|...++|+|+|..+............++ +...+.|.+..-..++...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999887 56678999999999754332222122222 233467777655566666999999987654
No 304
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.57 E-value=6.6e-07 Score=56.37 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=48.7
Q ss_pred CCeeeecCCCeEEEEEEEeeCC-CCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036 119 PSIRQEDDGKRLLFECRIQADP-APTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 185 (254)
+....+.+|++++|.|.+.+.. ...+.|+|... . +. .....++....+. ....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~--~~~~L~I~~~~~~Dsg 84 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSG--TDFTLTISRVEPEDAA 84 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccC--CEEEEEECCCChHHCE
Confidence 4456788999999999987654 56799997431 1 10 0001122222221 2247999999999999
Q ss_pred eEEEEEEcC
Q psy7036 186 KYKVTAKNE 194 (254)
Q Consensus 186 ~y~C~~~~~ 194 (254)
.|.|.+.+.
T Consensus 85 ~Y~Ca~~~~ 93 (106)
T cd04980 85 VYYCQQYGT 93 (106)
T ss_pred EEEEEEeCC
Confidence 999998653
No 305
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.57 E-value=1.6e-06 Score=53.01 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=45.7
Q ss_pred CeEEEEEEEee-CCCCceEEEeCCE----Eee-----------eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 24 NRLIFECQLLC-NPKPDIVWFRGET----QLS-----------EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 24 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
++++|.|.... ....+|+|.|... .+. .....++...... ....+|.|.|++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~--~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST--REDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC--CCccEEEEcCCCcccCEEEEEE
Confidence 46899999853 3356789998421 111 1111222222111 1235899999999999999999
Q ss_pred EEc-CCCceEEEEE
Q psy7036 88 AKN-KMGEVAASIN 100 (254)
Q Consensus 88 ~~~-~~~~~~~~~~ 100 (254)
+.. ..|...+.+.
T Consensus 79 ~~t~P~g~~~~~i~ 92 (96)
T cd05889 79 LVTYPQGSWEKVIE 92 (96)
T ss_pred EEeCCCCCeEEEEE
Confidence 875 3455555443
No 306
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.57 E-value=5.4e-07 Score=55.22 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=49.2
Q ss_pred CCCceeecCCCeEEEEEEEeeC--C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCN--P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
.|....+..|+.++|.|.+.|. | ...++|.|+++..............++.....+.|.+......+.-.|+|.+.+
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444456678999999999887 3 347899998753321111112222333334444566665444456689999997
Q ss_pred CCCc
Q psy7036 91 KMGE 94 (254)
Q Consensus 91 ~~~~ 94 (254)
....
T Consensus 85 ~~l~ 88 (96)
T cd07696 85 PDLP 88 (96)
T ss_pred CCCC
Confidence 6543
No 307
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.56 E-value=4.9e-07 Score=56.99 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=44.5
Q ss_pred eecCCCeEEEEEEEeeC-CCCceEEEeCCEE---------eee-------------CCcceEEEeecCCcceEEEEEEec
Q psy7036 19 QEDEGNRLIFECQLLCN-PKPDIVWFRGETQ---------LSE-------------DTRTVMKTTPIGTNKYLVALELDD 75 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~---------~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~ 75 (254)
.+.+|++|+|.|.+.+. ....+.|||.... +.. ..++.... ........|.|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence 57899999999998653 3457999974221 100 01111111 1112234799999
Q ss_pred cCCCCCeEEEEEEEc
Q psy7036 76 VIETDAGLYKVKAKN 90 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~ 90 (254)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999998753
No 308
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.56 E-value=1.1e-06 Score=53.84 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=47.7
Q ss_pred ecCCCeEEEEEEEee-CCCCe--EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 124 EDDGKRLLFECRIQA-DPAPT--VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
+.+|+.++|.|.+.+ .|.+. +.||+++..+..... ...........+++.+..-+.+|...|+|.|.+.....
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~--~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF--GDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee--ccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 568999999999886 56665 799999988854321 11111222234567776544444449999999876543
No 309
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.56 E-value=8.1e-07 Score=55.10 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=46.8
Q ss_pred eecCCCeEEEEEEEee-CCCCeEEEEECCEe-----cc------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEE
Q psy7036 123 QEDDGKRLLFECRIQA-DPAPTVIWSHSGVQ-----VK------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 190 (254)
.+.+|++++|.|.... .....+.|+|.... +. .....++....+.......|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4668999999999764 34557899986421 10 011112222211112235899999999999999999
Q ss_pred EEcCC
Q psy7036 191 AKNEL 195 (254)
Q Consensus 191 ~~~~~ 195 (254)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87643
No 310
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.56 E-value=1.2e-06 Score=53.73 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=46.5
Q ss_pred eeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
..+..|++++|.|.... ....+.|+|++...... ...........+.+.|..++.+|+|.|+|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~----~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL----HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce----ecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 35678999999998754 45679999988653211 000111123345899999999999999999753
No 311
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.55 E-value=1.3e-06 Score=50.31 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=47.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
+.|.|.+.+.+...+.|++++......... ..............|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999987778899999988765443221 111222233445589999999999999999998765
No 312
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.54 E-value=9.1e-07 Score=56.74 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCeeeecCCCeEEEEEEEee--CCCCeEEEEECC--Eec------cc---------CCcceEEEcCCCCceeeEEEEccC
Q psy7036 119 PSIRQEDDGKRLLFECRIQA--DPAPTVIWSHSG--VQV------KE---------DKRHKFSIDKDGHSYFASLEIIDV 179 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~--~~~------~~---------~~~~~~~~~~~~~~~~~~l~i~~~ 179 (254)
+..+.+.+|+.++|.|.+.+ .+...+.|++.. ... .. ....++....+.......|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44567788999999999877 567789999852 110 00 011122222222112347999999
Q ss_pred CCCCceeEEEEEEc
Q psy7036 180 TIEDAGKYKVTAKN 193 (254)
Q Consensus 180 ~~~d~G~y~C~~~~ 193 (254)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 313
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.53 E-value=3.4e-06 Score=51.55 Aligned_cols=72 Identities=17% Similarity=0.253 Sum_probs=45.7
Q ss_pred ecCCCeEEEEEEEee-CCC-CceEEEeCCEEeeeC-CcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 20 EDEGNRLIFECQLLC-NPK-PDIVWFRGETQLSED-TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 20 v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
+..|+.++|.|.+.| .|. ..++|++||+.+... .........++.....+.|.+. ..+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCCC
Confidence 346899999999988 453 478999999987654 1122222222233333344443 45667999999976543
No 314
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.53 E-value=3.7e-06 Score=52.98 Aligned_cols=80 Identities=10% Similarity=0.195 Sum_probs=50.0
Q ss_pred ecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCcceEEEcCCC--CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 124 EDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKRHKFSIDKDG--HSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
...|+.++|.|.+.++.+ ..++|++||..+..... ......++ +...+.|.+..-..++...|+|.+.+......
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~~p 96 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQAP 96 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCCCC
Confidence 446778999999998644 47999999999864322 22223332 33445676665333333369999998765443
Q ss_pred EEEEE
Q psy7036 200 ATISL 204 (254)
Q Consensus 200 ~~~~~ 204 (254)
....+
T Consensus 97 ~~~~~ 101 (111)
T cd05772 97 LRGTY 101 (111)
T ss_pred eEEEE
Confidence 33333
No 315
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.52 E-value=8e-07 Score=56.75 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=49.2
Q ss_pred CeeeecCCCeEEEEEEEe-eCCCCeEEEEECCE-----ecc--cCC----------cceEEEcCCCCceeeEEEEccCCC
Q psy7036 120 SIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGV-----QVK--EDK----------RHKFSIDKDGHSYFASLEIIDVTI 181 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~-----~~~--~~~----------~~~~~~~~~~~~~~~~l~i~~~~~ 181 (254)
..+.+..|+++.|.|... ......+.|++... .+. ... ..+.....+......+|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 456788999999999988 44556799998422 111 000 001111111112235799999999
Q ss_pred CCceeEEEEEEcC
Q psy7036 182 EDAGKYKVTAKNE 194 (254)
Q Consensus 182 ~d~G~y~C~~~~~ 194 (254)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999886
No 316
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.51 E-value=1.4e-06 Score=55.16 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=55.3
Q ss_pred CCeeEeC-CCceeecCCCeEEEEEEEee-CCC-CceEEEeCCEEeeeCCcce-EEEeec-CCcceEEEEEEeccCCCC-C
Q psy7036 8 APSFTQK-PQLRQEDEGNRLIFECQLLC-NPK-PDIVWFRGETQLSEDTRTV-MKTTPI-GTNKYLVALELDDVIETD-A 81 (254)
Q Consensus 8 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~i~~~~~~d-~ 81 (254)
+|.+.+. |....+.+++.++|.|.+.+ .|. ..|+|++||..+....... .....+ +.....+.|.|......+ .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 4655544 33334456788999999988 454 5899999999876543211 111111 233445567776555444 5
Q ss_pred eEEEEEEEcCCCceE
Q psy7036 82 GLYKVKAKNKMGEVA 96 (254)
Q Consensus 82 G~Y~C~~~~~~~~~~ 96 (254)
..|+|.+.+......
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 699999997655433
No 317
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.50 E-value=5.5e-06 Score=50.33 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=44.3
Q ss_pred ecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 20 EDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 20 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
+..|...+|.|.+.| .| ...++|+|||..+............++.....+.|.+ ...+...|+|.+.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEECC
Confidence 345777899999988 44 4578999999987622112222222333333334434 4667779999998754
No 318
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.47 E-value=1.1e-06 Score=54.52 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=48.6
Q ss_pred CCceeecCCCeEEEEEEEeeC-C-CCceEEEeCCEEeeeCCcce--EEEee--cCCcceEEEEEEeccCCCCCeEEEEEE
Q psy7036 15 PQLRQEDEGNRLIFECQLLCN-P-KPDIVWFRGETQLSEDTRTV--MKTTP--IGTNKYLVALELDDVIETDAGLYKVKA 88 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 88 (254)
|....+..|..++|.|.+.|. | ...++|++||+.+....... ..... ++.....+.|.|..-...+...|+|.+
T Consensus 8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V 87 (102)
T cd05768 8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVV 87 (102)
T ss_pred cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEe
Confidence 333345567899999999884 4 34689999999875432111 11111 233334446666544445667899999
Q ss_pred EcCCC
Q psy7036 89 KNKMG 93 (254)
Q Consensus 89 ~~~~~ 93 (254)
.+...
T Consensus 88 ~H~~l 92 (102)
T cd05768 88 GHEAL 92 (102)
T ss_pred EeCCC
Confidence 87653
No 319
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.44 E-value=2.5e-06 Score=54.61 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=47.6
Q ss_pred CCCceeecCCCeEEEEEEEeeCC--CCceEEEeCC--E-E--e---eeC-C--------cceEEEeecCCcceEEEEEEe
Q psy7036 14 KPQLRQEDEGNRLIFECQLLCNP--KPDIVWFRGE--T-Q--L---SED-T--------RTVMKTTPIGTNKYLVALELD 74 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~-~--~---~~~-~--------~~~~~~~~~~~~~~~~~l~i~ 74 (254)
.|....+.+|++|+|.|...+.. ...+.|||-. + + + ... . ..++..... .......|.|.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~~~L~I~ 81 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD-TSKSTVYLQLN 81 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE-ccCCEEEEEEC
Confidence 46677899999999999986432 4569999732 1 1 1 000 0 011111111 11123369999
Q ss_pred ccCCCCCeEEEEEEEc
Q psy7036 75 DVIETDAGLYKVKAKN 90 (254)
Q Consensus 75 ~~~~~d~G~Y~C~~~~ 90 (254)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998764
No 320
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.44 E-value=0.00032 Score=53.26 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=104.8
Q ss_pred CCCeeEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe--------------CCEEe-----------------------
Q psy7036 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--------------GETQL----------------------- 49 (254)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--------------~~~~~----------------------- 49 (254)
..|.+.-..+.+.+..+++-.+-|...-.|...-.|.. |.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (490)
T PHA03271 93 KMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRPSE 172 (490)
T ss_pred cCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCHHH
Confidence 35667777788888889999999998766655555621 11100
Q ss_pred -----eeCCcceEE----------EeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEeccccCCCC
Q psy7036 50 -----SEDTRTVMK----------TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLA 112 (254)
Q Consensus 50 -----~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~ 112 (254)
..+.+..+. ..........-.+.|.++...++|.|+-...+.... ......+.+.. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~-----RP 247 (490)
T PHA03271 173 LISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ-----RP 247 (490)
T ss_pred HhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe-----cC
Confidence 000000000 001111122337899999999999775555544433 22333444432 44
Q ss_pred CccccCCCeeeecCCCeEEEEEEEeeCCCC---eEEEEECCEecccCCcceEE----EcCCCCceeeEEEEccCCCCCce
Q psy7036 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDKRHKFS----IDKDGHSYFASLEIIDVTIEDAG 185 (254)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G 185 (254)
|.+...+. .+..|+...-.|.+..+.++ .+.|++||..+......... ...++....+++.+.+...+..-
T Consensus 248 PsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PP 325 (490)
T PHA03271 248 ASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPP 325 (490)
T ss_pred CCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCC
Confidence 44444333 35579999999998775444 59999999877533221111 12334444556666554333444
Q ss_pred eEEEEEEcCCCc
Q psy7036 186 KYKVTAKNELGE 197 (254)
Q Consensus 186 ~y~C~~~~~~~~ 197 (254)
..+|.+....+.
T Consensus 326 sLRCeV~W~rd~ 337 (490)
T PHA03271 326 KISCLVAWKQGD 337 (490)
T ss_pred CceEEEEEccCC
Confidence 899999876553
No 321
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.44 E-value=6.1e-06 Score=50.30 Aligned_cols=81 Identities=11% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEE
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLY 84 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 84 (254)
+|.+.+.+.. ....|+.++|.|.+.| .| ...++|.+||..+..+.. .......++.....+.|.+. +.+...|
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~y 76 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIY 76 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeE
Confidence 3554443332 2345677899999998 45 467899999998754321 12222223333334455554 3456699
Q ss_pred EEEEEcCC
Q psy7036 85 KVKAKNKM 92 (254)
Q Consensus 85 ~C~~~~~~ 92 (254)
+|.+.+..
T Consensus 77 tC~V~H~~ 84 (94)
T cd05767 77 SCIVEHWG 84 (94)
T ss_pred EEEEEeCC
Confidence 99998754
No 322
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.43 E-value=2.4e-06 Score=54.77 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCeeeecCCCeEEEEEEEeeC-CCCeEEEEECCE--e---cc-------cCCcceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036 119 PSIRQEDDGKRLLFECRIQAD-PAPTVIWSHSGV--Q---VK-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~--~---~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 185 (254)
+..+.+..|++++|.|..... ....+.|+|... . +. .....++....+.......|.|.+++.+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 345678899999999997654 345699998421 1 00 0111223322111111347999999999999
Q ss_pred eEEEEEEcC
Q psy7036 186 KYKVTAKNE 194 (254)
Q Consensus 186 ~y~C~~~~~ 194 (254)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999999853
No 323
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.40 E-value=1.8e-06 Score=54.04 Aligned_cols=71 Identities=14% Similarity=0.296 Sum_probs=44.8
Q ss_pred eecCCCeEEEEEEEeeCCCCceEEEeCCE----E---ee-eCC--cc--------eEEEeecCCcceEEEEEEeccCCCC
Q psy7036 19 QEDEGNRLIFECQLLCNPKPDIVWFRGET----Q---LS-EDT--RT--------VMKTTPIGTNKYLVALELDDVIETD 80 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~----~---~~-~~~--~~--------~~~~~~~~~~~~~~~l~i~~~~~~d 80 (254)
.+.+|++|+|.|.........+.|||... . +. ... .. ..+.... .......|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-RSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-ecCCEEEEEECCCCHHH
Confidence 46799999999998654456799998431 1 11 000 00 0011110 11234579999999999
Q ss_pred CeEEEEEEEc
Q psy7036 81 AGLYKVKAKN 90 (254)
Q Consensus 81 ~G~Y~C~~~~ 90 (254)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998763
No 324
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.39 E-value=4.5e-06 Score=49.92 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=47.9
Q ss_pred cCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEE-eecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 21 DEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKT-TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 21 ~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
..++.++|.|.+.+ .| ...|+|+++|..+.......... ..++.....+.|.+. ..+...|+|.+.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 34889999999988 45 34799999999876543332222 234444445566666 56666999999876543
No 325
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.38 E-value=3.1e-06 Score=52.44 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=45.6
Q ss_pred eecCCCeEEEEEEEeeC--CCCeEEEEECCE--ec---c-------cCCcceEEEcCCCCceeeEEEEccCCCCCceeEE
Q psy7036 123 QEDDGKRLLFECRIQAD--PAPTVIWSHSGV--QV---K-------EDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~--~~---~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 188 (254)
.+.+|++++|.|..... ....+.||+... .. . .....++....+. ....|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG--NTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC--CEEEEEECCCChhhCEEEE
Confidence 35689999999998654 455799998432 11 0 0011123332222 2347999999999999999
Q ss_pred EEEEc
Q psy7036 189 VTAKN 193 (254)
Q Consensus 189 C~~~~ 193 (254)
|.+.+
T Consensus 80 C~~~~ 84 (98)
T cd04984 80 CQVWD 84 (98)
T ss_pred EEEcc
Confidence 99875
No 326
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.38 E-value=9e-06 Score=54.95 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=59.0
Q ss_pred eeeecCCCeEEEEEEEe-eCCCCeEEEEECCEecc----------cCCcceEEE-cCCCCceeeEEEEccCCCCCceeEE
Q psy7036 121 IRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVK----------EDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKYK 188 (254)
Q Consensus 121 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~ 188 (254)
.+.+.+|+++.|.|... +...+.+.|+|....+. .....++.. ..+ ...+.|.|.+++.+|+|.|+
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s--~~~StItIknVt~sDeGcY~ 101 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS--FNESTILIKNVSLKDNGCYT 101 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC--CCcceEEEEeCChhhCeEEE
Confidence 45678899999999974 55567899998643221 111112221 111 12358999999999999999
Q ss_pred EEEEc-CCC-cceEEEEEEEec
Q psy7036 189 VTAKN-ELG-ESNATISLNFDS 208 (254)
Q Consensus 189 C~~~~-~~~-~~~~~~~~~v~~ 208 (254)
|.+.. +.| ..+.+..|.|..
T Consensus 102 C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 102 CIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEEecCCCCCceeEEEEEEEc
Confidence 99874 456 677888888875
No 327
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.37 E-value=7e-06 Score=47.08 Aligned_cols=66 Identities=26% Similarity=0.478 Sum_probs=45.9
Q ss_pred EEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 130 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
+.|.|.+.+.+...+.|++++.......................|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368899888677789999988765433221111112222344589999999999999999998765
No 328
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.36 E-value=3.6e-06 Score=51.13 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=46.2
Q ss_pred CCeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 127 GKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 127 g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
|+.+.+.|.+. ++|.+.+.|+.++..+............++ ....+.|.+..-+.++...++|.|.++....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 77999999755 688899999999887722221122222222 2334677776555555669999999876543
No 329
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.35 E-value=9.5e-06 Score=47.44 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=43.3
Q ss_pred EEEEEEEeeC-CC-CeEEEEECCEecccCC-cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 130 LLFECRIQAD-PA-PTVIWSHSGVQVKEDK-RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 130 ~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
++|.|.+.++ |+ ..+.|+|+|+.+.... ........++ +...+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999986 43 4799999998743321 1122222333 3445677776666667779999998764
No 330
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.33 E-value=1.1e-05 Score=51.95 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=48.0
Q ss_pred CCeeeecCCCeEEEEEEEeeCC------CCeEEEEECCEe------cc--c-------CCcceEEEcCCCCceeeEEEEc
Q psy7036 119 PSIRQEDDGKRLLFECRIQADP------APTVIWSHSGVQ------VK--E-------DKRHKFSIDKDGHSYFASLEII 177 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~~~~------~~--~-------~~~~~~~~~~~~~~~~~~l~i~ 177 (254)
+..+.+..|+.++|.|...... ...+.|++.... +. . ....++....+.....+.|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3456788899999999864221 245899985321 10 0 0011222221222334689999
Q ss_pred cCCCCCceeEEEEEEcC
Q psy7036 178 DVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 178 ~~~~~d~G~y~C~~~~~ 194 (254)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 331
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.33 E-value=1.3e-05 Score=49.06 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=43.6
Q ss_pred CCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCc-ceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 22 EGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTR-TVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 22 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
.++.++|.|.+.| .| ...|+|+|||+. ..+.. .......++.....+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 5678999999988 34 457899999997 33211 11111113334444566666544334668999998764
No 332
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.32 E-value=2.9e-06 Score=52.57 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=48.3
Q ss_pred ecCCCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 124 EDDGKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
...++.++|.|.+.++.+ ..+.|++||..+..... .......++ +...+.|.+..-...+...|+|.+.+.....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~~ 92 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLSS 92 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCCC
Confidence 334677899999998543 46899999998753311 112222233 3445667776555555679999999875433
No 333
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.32 E-value=3e-06 Score=52.62 Aligned_cols=72 Identities=10% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcce--EEEcC---CCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHK--FSIDK---DGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~--~~~~~---~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.+..++|.|.+.|+.+. .+.|+++|..+....... ..... ..+...+.|.+..-...+...|+|.+.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l~ 93 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEALP 93 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCCC
Confidence 46779999999996544 579999999875432111 11111 22334566766544444556899999886543
No 334
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.31 E-value=1.1e-05 Score=47.46 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=49.1
Q ss_pred eecCCCeEEEEEEEeeCC--CCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 123 QEDDGKRLLFECRIQADP--APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
.+..|++++|+|.....+ .+.+.|...+..... . ...+.. +|.+..+...|+|.++|.+.........
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~-~~~~~k----tL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----I-LNQDKK----TLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----e-ccCCcc----EEEeceeCcccCCEEEEEEEECceEEEE
Confidence 566899999999986544 448999864433211 0 011111 7999999999999999999755333444
Q ss_pred EEEEEE
Q psy7036 201 TISLNF 206 (254)
Q Consensus 201 ~~~~~v 206 (254)
.+.+.|
T Consensus 80 ~~~V~V 85 (88)
T cd07694 80 KLDIKV 85 (88)
T ss_pred EeeEEE
Confidence 444444
No 335
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.31 E-value=5.3e-06 Score=50.85 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=46.3
Q ss_pred eecCCCeEEEEEEEeeC-CCC--eEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 123 QEDDGKRLLFECRIQAD-PAP--TVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
.+..++.++|.|.+.++ .++ .+.|.|+++..............++ +...+.|.+..-...+.-.|+|.+.+.....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~~ 89 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLPT 89 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCCC
Confidence 34457889999999998 443 5899998753321111112222333 2344566666544444558999999876544
Q ss_pred e
Q psy7036 199 N 199 (254)
Q Consensus 199 ~ 199 (254)
.
T Consensus 90 p 90 (96)
T cd07696 90 P 90 (96)
T ss_pred C
Confidence 3
No 336
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.29 E-value=8.3e-06 Score=49.84 Aligned_cols=71 Identities=11% Similarity=0.088 Sum_probs=41.4
Q ss_pred eecCCCeEEEEEEEee-CC-CCceEEEeCCEEeeeCCcceEEEeecC-CcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 19 QEDEGNRLIFECQLLC-NP-KPDIVWFRGETQLSEDTRTVMKTTPIG-TNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
.+..+..++|.|.+.| .| ...++|.+||..+..+..... ...++ .....+.|.+..-. ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~-~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSE-KDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEecc-EecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 4445678999999988 44 457899999998654322111 11122 22223344444221 2345999998743
No 337
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.28 E-value=1.3e-05 Score=49.08 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred CCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 22 EGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 22 ~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
......+.|.+ .|.|.+.|+|+++. ............++.....+.|.+......|...|+|++.+....
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 34457789998 56899999999971 111111111122223334557777655556666999999987644
No 338
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.27 E-value=7.4e-06 Score=51.84 Aligned_cols=77 Identities=9% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcc-eEEEcCC--CCceeeEEEEccCCCCC-ceeEEEEEEcCCCcce
Q psy7036 126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRH-KFSIDKD--GHSYFASLEIIDVTIED-AGKYKVTAKNELGESN 199 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~ 199 (254)
.+..++|.|.+.++.+. .+.|++|+..+...... ......+ .+...+.|.+..-...+ ...|+|.+.+......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 45678999999986443 68999999887643211 1122222 23445677777655444 4589999998766555
Q ss_pred EEE
Q psy7036 200 ATI 202 (254)
Q Consensus 200 ~~~ 202 (254)
...
T Consensus 97 ~~~ 99 (115)
T cd05769 97 DKW 99 (115)
T ss_pred eee
Confidence 443
No 339
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.27 E-value=2.3e-05 Score=47.90 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=26.7
Q ss_pred eEEEEccCCCCCceeEEEEEEc-CCCcceEEEEE
Q psy7036 172 ASLEIIDVTIEDAGKYKVTAKN-ELGESNATISL 204 (254)
Q Consensus 172 ~~l~i~~~~~~d~G~y~C~~~~-~~~~~~~~~~~ 204 (254)
++|.|.+++.+|+|.|+|.+.. +.|...+.+.+
T Consensus 60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 5899999999999999999975 46666665543
No 340
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.24 E-value=3e-05 Score=47.45 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=42.6
Q ss_pred CCeEEEEEEEeeCCCC--eEEEEECCEecccCC-cceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 127 GKRLLFECRIQADPAP--TVIWSHSGVQVKEDK-RHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
++.++|.|.+.|+.++ .+.|.+++....... ........++ +...+.|.+.. .+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCCC
Confidence 6679999999996443 799999986432221 1122223332 23344565554 3678999999886543
No 341
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.24 E-value=2.3e-05 Score=46.82 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCCeEEEEEEEeeCCC-C-eEEEEECCEecccCCcceEEE-cCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 126 DGKRLLFECRIQADPA-P-TVIWSHSGVQVKEDKRHKFSI-DKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~-~-~~~W~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.+..+.|.|.+.++.+ . .+.|++++..+.......... ..++ +...+.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 3788999999988543 3 599999999876543322222 2233 3444566666 45555899999987554
No 342
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.23 E-value=6.6e-06 Score=50.33 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCeeE-eCCCceeecCCCeEEEEEEEee-C-C-CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeE
Q psy7036 8 APSFT-QKPQLRQEDEGNRLIFECQLLC-N-P-KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGL 83 (254)
Q Consensus 8 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 83 (254)
.|.+. ..|....+..+..++|.|.+.+ . | ...|+|.++|.. .. .........++.....+.|.+..-.......
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ 80 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEP 80 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCe
Confidence 45543 3454445557889999999988 3 4 457999999875 11 1111122234444555567766444444457
Q ss_pred EEEEEEcCCC
Q psy7036 84 YKVKAKNKMG 93 (254)
Q Consensus 84 Y~C~~~~~~~ 93 (254)
|+|.|.+...
T Consensus 81 ytC~V~H~~l 90 (99)
T cd04986 81 FACTVTHPEG 90 (99)
T ss_pred EEEEEECCCc
Confidence 9999987653
No 343
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.23 E-value=1.4e-05 Score=48.78 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=45.3
Q ss_pred CCCeEEEEEEEeeCCC--CeEEEEECCEecccC-CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKED-KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
....+.|.|.+.++.+ ..+.|.++|..+... .........++ +...+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3456899999998644 468999999886332 11112222222 333456666654444566999999986544
No 344
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.23 E-value=3.4e-06 Score=46.55 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=36.5
Q ss_pred ecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 20 EDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 20 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
-..|.+|+|+|+..+. .+.|++++..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence 3579999999976422 2999999865543221 24444555 8899999998643
No 345
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.21 E-value=1.9e-05 Score=48.19 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=44.8
Q ss_pred CCeEEEEEEEe-eCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy7036 23 GNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101 (254)
Q Consensus 23 g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 101 (254)
...+.++|.+. +.|.+.|+|+++... ..........++.....+.|.+......|...|+|++.+........+.+
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 34578999985 589999999997211 11111111112222334567776555666669999999876544333333
No 346
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.19 E-value=7.2e-06 Score=48.73 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=38.6
Q ss_pred eEEEEEEEeeCCC--CceEEEeCCE-----Eeee-----------CCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE
Q psy7036 25 RLIFECQLLCNPK--PDIVWFRGET-----QLSE-----------DTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV 86 (254)
Q Consensus 25 ~v~l~C~~~~~~~--~~v~W~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 86 (254)
+|+|.|.+..... ..+.|++... .+.. ....++...... ......|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT-SKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC-cCCEEEEEEcCCCHHHCEEEEE
Confidence 4789999875443 3789998431 1111 011122222111 1345689999999999999999
Q ss_pred EE
Q psy7036 87 KA 88 (254)
Q Consensus 87 ~~ 88 (254)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
No 347
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.17 E-value=2e-05 Score=49.67 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=43.6
Q ss_pred eecCCCeEEEEEEEeeC-CCCeEEEEECCEe---------cc-c------------CCcceEEEcCCCCceeeEEEEccC
Q psy7036 123 QEDDGKRLLFECRIQAD-PAPTVIWSHSGVQ---------VK-E------------DKRHKFSIDKDGHSYFASLEIIDV 179 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~---------~~-~------------~~~~~~~~~~~~~~~~~~l~i~~~ 179 (254)
.+..|+.++|.|..... ....+.|||.... +. . ..+..+...... ....|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~--~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDS--SRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCC--CEEEEEECCC
Confidence 46689999999998653 3457999985321 00 0 011111111111 1236999999
Q ss_pred CCCCceeEEEEEEc
Q psy7036 180 TIEDAGKYKVTAKN 193 (254)
Q Consensus 180 ~~~d~G~y~C~~~~ 193 (254)
+.+|+|.|.|...+
T Consensus 80 ~~~Dsg~YyCa~~~ 93 (107)
T cd07700 80 KPEDSGTYFCMTVG 93 (107)
T ss_pred CHHHCEEEEEeEcC
Confidence 99999999999853
No 348
>KOG1480|consensus
Probab=98.17 E-value=1.4e-06 Score=70.50 Aligned_cols=177 Identities=20% Similarity=0.277 Sum_probs=98.8
Q ss_pred CCCCeeEeCCCceeecCCCeEEEEEEEeeCCCC----ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCC
Q psy7036 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP----DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81 (254)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 81 (254)
+..|.|+..|++..+..|.++.|.|.+...++. .-.|..+............ .+.......+.|......+.
T Consensus 22 g~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~t----sg~~~~~~si~Isr~~v~~~ 97 (909)
T KOG1480|consen 22 GDLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDET----SGLGVREVSIDISRQQVETS 97 (909)
T ss_pred CCcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcc----cceeEEeeeeeeehhhhhcc
Confidence 357889999999999999999999998643332 2235443322211100000 00000111344444443333
Q ss_pred e---EEEE--EEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEE-EeeCCCCeEEEEECCEeccc
Q psy7036 82 G---LYKV--KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKE 155 (254)
Q Consensus 82 G---~Y~C--~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~ 155 (254)
| .|.| .+....|.... ++.+..-.+ ....+...+....+..+..+.+.|. ..+.|...+.|++++..+..
T Consensus 98 ~~~~d~~cQc~a~~~~g~~~s--~~a~vr~ay--~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p 173 (909)
T KOG1480|consen 98 GGPEDYWCQCVAWSDDGTVKS--RKATVRIAY--LRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP 173 (909)
T ss_pred cCccceeeeeeeecCCCcchh--hhHHHHHHH--HHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc
Confidence 2 5665 45555552111 111100000 0111222333445666777888888 45677788999999988766
Q ss_pred CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 156 DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
..+.. ...+. .+++...+..|.|+|+|.+.|..+.
T Consensus 174 d~n~~--~~~d~-----~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 174 DANVI--RASDH-----NLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred cccch--hhhcC-----Cccccchhhhhcccceeeeehhhcc
Confidence 33222 22222 5889999999999999999997764
No 349
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.16 E-value=6.5e-05 Score=45.94 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=45.3
Q ss_pred CCCeEEEEEEEeeCCCC--eEEEEECCEecccC-CcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKED-KRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
.|+..+|.|.+.++.++ .+.|+++|..+... .........++ +...+.|.+.. .+...|+|.+.+......
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~~~ 87 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQEP 87 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCCCc
Confidence 47789999999986443 68999999987653 21222233332 23344555543 455589999998765433
No 350
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.16 E-value=3.1e-05 Score=49.59 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=46.8
Q ss_pred CCeeeecCCCeEEEEEEEeeCC--CCeEEEEECCE--e---c---cc---------CCcceEEEcCCCCceeeEEEEccC
Q psy7036 119 PSIRQEDDGKRLLFECRIQADP--APTVIWSHSGV--Q---V---KE---------DKRHKFSIDKDGHSYFASLEIIDV 179 (254)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~---~---~~---------~~~~~~~~~~~~~~~~~~l~i~~~ 179 (254)
+....+..|+.++|.|...... ...+.|||... . + .. ....++....+.......|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456788899999999875433 45699998421 1 1 00 001122222111112236999999
Q ss_pred CCCCceeEEEEEEc
Q psy7036 180 TIEDAGKYKVTAKN 193 (254)
Q Consensus 180 ~~~d~G~y~C~~~~ 193 (254)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999865
No 351
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.14 E-value=0.00041 Score=53.54 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=76.7
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---eEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIW 146 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W 146 (254)
.|.|..++..++|.|+=.+.+.++.......++|.- ..+|.+...+. .+.+|+...-.|.+..+.++ .+.|
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~----yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rW 272 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST----YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRW 272 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE----ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 599999999999999866656555444444444421 13444443333 35679999999998765443 5999
Q ss_pred EECCEeccc-CC-cceEEEcCCC-CceeeEEEEccCCC-CCceeEEEEEEcCCCc
Q psy7036 147 SHSGVQVKE-DK-RHKFSIDKDG-HSYFASLEIIDVTI-EDAGKYKVTAKNELGE 197 (254)
Q Consensus 147 ~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~l~i~~~~~-~d~G~y~C~~~~~~~~ 197 (254)
++|+..+.. .. ........++ ....|+|.+..... +..-..+|.+......
T Consensus 273 f~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 273 YKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred EeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 999998872 21 1222222233 24556777766443 3344899998865443
No 352
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.14 E-value=6.2e-05 Score=46.05 Aligned_cols=75 Identities=8% Similarity=0.201 Sum_probs=46.0
Q ss_pred CeEEEEEEE-eeCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 128 KRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 128 ~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
....+.|.+ .++|.+.|.|+++ +............++ ....+.|.+.....+|...|+|.+.+........+.+.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 456788997 4789999999997 111111111122232 33456777765555555699999999876554444433
No 353
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.13 E-value=3.1e-05 Score=47.39 Aligned_cols=69 Identities=6% Similarity=0.051 Sum_probs=42.5
Q ss_pred CCCeEEEEEEEeeCCC--CeEEEEECCEecccCC-cceEEEc-CCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 126 DGKRLLFECRIQADPA--PTVIWSHSGVQVKEDK-RHKFSID-KDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
.++.++|.|.+.++.+ ..+.|.++|.. .... ....... ++.+...+.|.+..-.......|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 3566899999998654 36899999997 3221 1111222 2233445566666543333558999999865
No 354
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.10 E-value=0.0005 Score=52.57 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred CCCCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEEE-eecCCcceEEEEEEeccCCC
Q psy7036 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMKT-TPIGTNKYLVALELDDVIET 79 (254)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~ 79 (254)
.-..+|.+.+.+.. +.+|+...-.|.+.. .| +..++||+|+..+.......... ...++....+++.+.+....
T Consensus 217 ~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~ 294 (466)
T PHA03270 217 RMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGL 294 (466)
T ss_pred EEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccC
Confidence 33456666666554 679999999999965 44 45799999999875432222221 22222234445555443322
Q ss_pred CC-eEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCC-CCeEEEEECCEec
Q psy7036 80 DA-GLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADP-APTVIWSHSGVQV 153 (254)
Q Consensus 80 d~-G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~ 153 (254)
.. =..+|.+.-.... ....+.-.+ .|.+...+. .+....|.- .|.+.--| ...+.|.-++...
T Consensus 295 ~~PPsLrC~v~W~rd~vS~sR~nAa~--------~P~VY~~P~Isv~F~dG~A---VCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 295 APPRNLTCEFTWHRDSVSFSRRNATG--------APTVLPRPTIEMEFGGDEA---VCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred CCCCCceEEEEEccCCccceeecccc--------cCccccCCeEEEEEeCCEE---EEeccccCCCCEEEEEecCCCC
Confidence 12 2689987632222 222222121 122222222 233333433 36655444 3479998776554
No 355
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.09 E-value=0.00065 Score=51.97 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=77.5
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceE--EEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---eE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVA--ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TV 144 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~ 144 (254)
.|.|..++...+|.|+=...+..+... ..++|... .+|.+...+. .+.+|+...-.|.+..+.++ .+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y------r~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~l 254 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF------RRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAF 254 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe------cCCcccccCC--ccccCCCceEEEEeeeecCCCceEE
Confidence 499999999999999998877666433 33444443 3444433333 35679999999998765443 59
Q ss_pred EEEECCEecccC--CcceEEEcCCCCceeeEEEEccCCCCC-ceeEEEEEEcCCCc
Q psy7036 145 IWSHSGVQVKED--KRHKFSIDKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGE 197 (254)
Q Consensus 145 ~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~ 197 (254)
.|++|+..+... .........++....|++++....... .-..+|.+......
T Consensus 255 rWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~ 310 (466)
T PHA03270 255 RWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS 310 (466)
T ss_pred EEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence 999999887532 222233344555556677766544322 23789998865443
No 356
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.09 E-value=8.8e-05 Score=45.10 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=43.7
Q ss_pred CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.|...+|.|.+.++.++ .+.|.+||..+............++. ...+.|.+. ..+...|+|.+.+....
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~l~ 85 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNSMS 85 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECCCC
Confidence 36667899999996543 58999999987622222233333432 223445444 45666899999886443
No 357
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.08 E-value=9.1e-05 Score=45.19 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCeEEEEEEEeeCCC--CeEEEEECCEecccCCc-ceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 127 GKRLLFECRIQADPA--PTVIWSHSGVQVKEDKR-HKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 127 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
+...+|.|.+.|+.+ ..+.|.++|..+..... .......++. ...+.|.+.. .+...|+|.+.+....
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l~ 86 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGLE 86 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCCC
Confidence 455799999999654 36899999998754321 1222333332 3345566553 3455899999886443
No 358
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.06 E-value=7.7e-05 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=41.1
Q ss_pred CCCeEEEEEEEeeCCCC--eEEEEECCEecccCCcce-EEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 126 DGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
.+..++|.|.+.++.+. .+.|.++|..+....... .....+.+...+.|.+..-. ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 35678999999996543 579999999875432211 22222222334556555322 2336999998843
No 359
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.04 E-value=3.5e-05 Score=48.20 Aligned_cols=68 Identities=13% Similarity=0.265 Sum_probs=43.8
Q ss_pred ecCCCeEEEEEEEeeCCCCeEEEEECCEe-------cc-cCC------------cceEEEcCCCCceeeEEEEccCCCCC
Q psy7036 124 EDDGKRLLFECRIQADPAPTVIWSHSGVQ-------VK-EDK------------RHKFSIDKDGHSYFASLEIIDVTIED 183 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-------~~-~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d 183 (254)
+..|+.++|.|.........+.|++.... +. ... ..++....+. ....|.|.+++.+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~--~~~~L~I~~~~~sD 80 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS--NSFVLTLKNFQKEN 80 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC--CEEEEEECCCCHHH
Confidence 56799999999976554456999985421 10 000 1122221222 23479999999999
Q ss_pred ceeEEEEEEc
Q psy7036 184 AGKYKVTAKN 193 (254)
Q Consensus 184 ~G~y~C~~~~ 193 (254)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999763
No 360
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.04 E-value=1.7e-05 Score=48.52 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred ecCCCeEEEEEEEeeCC-C--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 124 EDDGKRLLFECRIQADP-A--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~~~-~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
...+..++|.|.+.++. + ..+.|.+++.. ..... ......++ +...+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQT-SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEc-CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 43577899999999865 2 36999999876 21111 11122233 34556777765444444579999988754
No 361
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.03 E-value=0.00013 Score=44.54 Aligned_cols=75 Identities=9% Similarity=0.190 Sum_probs=47.0
Q ss_pred CeEEEEEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCCC-ceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 128 KRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 128 ~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
..+.+.|.+. +.|.+.|+|+++. ............++. ...+.|.+.....+|...|+|.+.+........+.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3578899865 6888999999872 111111122222332 3456777765555666699999999876655555444
No 362
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.02 E-value=0.00065 Score=52.46 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=71.4
Q ss_pred CCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCc--ceEEEeecCCcceEEEEEEeccCC-C
Q psy7036 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTR--TVMKTTPIGTNKYLVALELDDVIE-T 79 (254)
Q Consensus 6 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~-~ 79 (254)
..+|.+.+.+.. +.+|+...-.|.+.. .| ...++|++||..+..... .......++.....+.|.+.+... .
T Consensus 235 yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~ 312 (486)
T PHA03273 235 YNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEE 312 (486)
T ss_pred ecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCC
Confidence 456666666554 679999999999965 34 457999999998872221 112212233334455666665432 3
Q ss_pred CCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECC
Q psy7036 80 DAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSG 150 (254)
Q Consensus 80 d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~ 150 (254)
.--..+|.+.-.... ....+.-.+ .|.+...+. .+....|+- .|.+.--|. ..+.|.-++
T Consensus 313 ~PP~lrC~v~W~rd~vS~~RfsAt~--------~P~Vy~~P~Is~~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 313 YTPSLRCSIEWYRDEVSFARIAKAG--------TPSVFVAPTVSVTVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred CCCCceEEEEEccCCcceeeccccc--------cCccccCCeEEEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence 334789987633222 222111111 122222222 233333432 477665554 579998766
No 363
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.00 E-value=0.001 Score=51.68 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=73.9
Q ss_pred EEEEEeccCCCCCeEEEEEEEcCC-Cc--eEEEEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEEeeCCCC---
Q psy7036 69 VALELDDVIETDAGLYKVKAKNKM-GE--VAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--- 142 (254)
Q Consensus 69 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--- 142 (254)
..|.|.+++..++|.|+=.+.+.. +. ....++|.+. .+|.+...+. .+.+|+...-.|.+..+.++
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y------r~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~Sv 360 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY------KRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSV 360 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe------cCCCccccCC--ccccCCCceEEEEeeeecCCCce
Confidence 369999999999999986655332 22 3345555554 3444333333 35679999999998775443
Q ss_pred eEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccCCCCC--ceeEEEEEEcCCC
Q psy7036 143 TVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDVTIED--AGKYKVTAKNELG 196 (254)
Q Consensus 143 ~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d--~G~y~C~~~~~~~ 196 (254)
.+.|++|+..+..... .......+| ....|+|.+......| .-..+|.+....+
T Consensus 361 rlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD 418 (566)
T PHA03269 361 IVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD 418 (566)
T ss_pred EEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence 5999999888763211 112223333 4455667664332222 3468999887544
No 364
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.98 E-value=0.00062 Score=52.87 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCCCCCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcce-EEEeecCCcceEEEEEEeccCCC
Q psy7036 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTV-MKTTPIGTNKYLVALELDDVIET 79 (254)
Q Consensus 4 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~ 79 (254)
....+|.+.+.+.. +.+|+...-.|.+.. .| +..++||+|+..+....... .....++.-...++|.+......
T Consensus 325 ~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~ 402 (566)
T PHA03269 325 MSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNA 402 (566)
T ss_pred EEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCcccc
Confidence 34456766665544 679999999999965 34 45799999988876422111 12223333344555655433222
Q ss_pred C--CeEEEEEEEcC-CCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECCEe
Q psy7036 80 D--AGLYKVKAKNK-MGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQ 152 (254)
Q Consensus 80 d--~G~Y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~ 152 (254)
| --..+|.+.-. .+.....+.-.+ .|.+...+. .+....|.- .|.+.--|. ..+.|.-++..
T Consensus 403 d~~PPsLrCeV~W~RDsVS~tRfnAaa--------tP~VY~~PtISm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 403 DYPPPAIQCNVLWIRDGVSHMKYSAAV--------TPDVYPFPNVSIEIIDGHI---VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred CCCCCCceEEEEEccCCchheeccccc--------CCccccCCeEEEEEeCCEE---EEecccccCCCceEEEEecCCC
Confidence 2 34579987632 222222111111 111122222 333434443 377665554 47899877655
No 365
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.97 E-value=0.00013 Score=44.50 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=48.4
Q ss_pred eeecCCCeEEE-EEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 18 RQEDEGNRLIF-ECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 18 ~~v~~g~~v~l-~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
..+.+|+.+.+ .|.+ .|.|.+.|+|+.+..... ........++.....+.+.+...+..|.-.++|.+.+..-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 45678999998 9998 458999999998643221 1112222334444555777766666667799999987653
No 366
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.92 E-value=0.00014 Score=45.54 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=47.0
Q ss_pred eCCCceeecCCCeEEEEEEEeeCC--C-CceEEEeCCE-Ee------e--------eCCcceEEEeecCCcceEEEEEEe
Q psy7036 13 QKPQLRQEDEGNRLIFECQLLCNP--K-PDIVWFRGET-QL------S--------EDTRTVMKTTPIGTNKYLVALELD 74 (254)
Q Consensus 13 ~~~~~~~v~~g~~v~l~C~~~~~~--~-~~v~W~~~~~-~~------~--------~~~~~~~~~~~~~~~~~~~~l~i~ 74 (254)
+++....+..|+.++|+|.+.|.. . ..+.|+|... .+ . ...++..... ...-...|.+.
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~---~s~ntv~L~l~ 79 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGT---LGNEQVNFTLQ 79 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEe---CCCCEEEEEEc
Confidence 345566889999999999997643 3 5688998421 11 0 1111111111 12233489999
Q ss_pred ccCCCCCeEEEEEE
Q psy7036 75 DVIETDAGLYKVKA 88 (254)
Q Consensus 75 ~~~~~d~G~Y~C~~ 88 (254)
+++.+|.+.|.|..
T Consensus 80 ~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 80 NLRANQTDIYFCKI 93 (115)
T ss_pred CCCHHHCeEEEEEe
Confidence 99999999999964
No 367
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.87 E-value=0.0026 Score=48.60 Aligned_cols=133 Identities=15% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCeeEeCCCceeecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEE---EeecCCcceEEEEEEeccCCCCC
Q psy7036 8 APSFTQKPQLRQEDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMK---TTPIGTNKYLVALELDDVIETDA 81 (254)
Q Consensus 8 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~ 81 (254)
+|.+.+.+.. +.+|+...-.|.+.. .| +..++|++||............ ....++....++|.+.+.....-
T Consensus 247 PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~P 324 (490)
T PHA03271 247 PASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPP 324 (490)
T ss_pred CCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCC
Confidence 4555555543 679999999999966 34 3579999999877543322221 12233334445565554433333
Q ss_pred eEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCC-CCeEEEEECCEec
Q psy7036 82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADP-APTVIWSHSGVQV 153 (254)
Q Consensus 82 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~ 153 (254)
=..+|.+.-......... .-. ..|.+...+. .+....|+. .|.+.--| ...+.|.-++...
T Consensus 325 PsLRCeV~W~rd~v~s~r--nAa------atP~VY~~P~ISv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 325 PKISCLVAWKQGDMISTT--NAT------AIPTVYHHPRISLAFKDGYA---ICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred CCceEEEEEccCCceeee--ecc------cCCccccCCeEEEEEeCCEE---EEeccccCCCcEEEEEecCCCC
Confidence 478998864333222222 111 1222222222 334444443 36654443 3479998766543
No 368
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.87 E-value=0.00028 Score=43.03 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=48.5
Q ss_pred eeeecCCCeEEE-EEEEe-eCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 121 IRQEDDGKRLLF-ECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 121 ~~~~~~g~~~~l-~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
...+.+|+.+.+ .|.+. +.|.+.|+|+.+..... . .......++ ....+.+.+...+..|...++|.+.++...
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--E-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--c-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 445667888888 88854 67889999997643321 1 111222233 345567777666666667999999988654
Q ss_pred c
Q psy7036 198 S 198 (254)
Q Consensus 198 ~ 198 (254)
.
T Consensus 87 ~ 87 (97)
T cd07704 87 Q 87 (97)
T ss_pred C
Confidence 3
No 369
>PHA02633 hypothetical protein; Provisional
Probab=97.87 E-value=7.1e-05 Score=40.56 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=32.3
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSR 105 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 105 (254)
.|+|.++..+|+|.|.|.+.|..-....++.|.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 699999999999999999998887788888888864
No 370
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.85 E-value=0.00012 Score=43.36 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=36.6
Q ss_pred EEEEEEEeeCCCC--eEEEEECCE--e---cc-c----------CCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEE
Q psy7036 130 LLFECRIQADPAP--TVIWSHSGV--Q---VK-E----------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTA 191 (254)
Q Consensus 130 ~~l~C~~~~~~~~--~~~W~~~~~--~---~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 191 (254)
+.|.|.......+ .+.|++... . +. . ....++............|.|.+++.+|+|.|.|.+
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 6788987654443 688987431 0 10 0 111122222221122357999999999999999963
No 371
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.80 E-value=0.0084 Score=45.70 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=51.4
Q ss_pred eecCCCeEEEEEEEee--CC-CCeEEEEECCEecc-----------------cCCcceEEEcCC--CCceeeEEEEccCC
Q psy7036 123 QEDDGKRLLFECRIQA--DP-APTVIWSHSGVQVK-----------------EDKRHKFSIDKD--GHSYFASLEIIDVT 180 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~--~~-~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~l~i~~~~ 180 (254)
.+..|..+.+.|..+- +. -....|+--+-++. ....+-+....+ .....++|+|..+.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 4556999999999653 33 33578986443221 111111111111 11335799999999
Q ss_pred CCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 181 IEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 181 ~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
.+..|-|.|.|............+.|.
T Consensus 355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~ 381 (500)
T PHA02914 355 INNAGCYEAQAFMGKFKEECRHCFKVA 381 (500)
T ss_pred EEcCCceEEEEecCcchhhhhhheEec
Confidence 999999999998765444444444443
No 372
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.78 E-value=9.3e-05 Score=41.22 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=35.9
Q ss_pred CCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 23 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
.+.|.|+|.+ ..+|+|++ |..+...... +|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~--------------tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVSNT--------------LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccccc--------------EEeccCcccCCCcceEecCcc
Confidence 4579999965 25699999 5544322111 688888889999999998865
No 373
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.77 E-value=6.9e-05 Score=41.45 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=34.3
Q ss_pred CCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
.|..|+|+|..... .+.|.+++..+..... .+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE--------------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCCCc--------------eEEeeccC-CCCceEEEEeCC
Confidence 58899999985422 3999999865544222 23344444 789999999853
No 374
>PHA02982 hypothetical protein; Provisional
Probab=97.69 E-value=0.0074 Score=41.73 Aligned_cols=163 Identities=11% Similarity=0.189 Sum_probs=87.1
Q ss_pred CceeecCCCeEEEEEEEee-CCCCceEEEeCCE-EeeeCC----------------cceEEEeecCCcceEEEEEEeccC
Q psy7036 16 QLRQEDEGNRLIFECQLLC-NPKPDIVWFRGET-QLSEDT----------------RTVMKTTPIGTNKYLVALELDDVI 77 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~l~i~~~~ 77 (254)
.++...++++|.|.|.... +.-....|++++. .+.... +......-. ...++|+|.++.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~---g~~STLTIkk~~ 108 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS---GNSSTFTMKKPD 108 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe---ccceeEEeccCC
Confidence 3456678999999999632 2334688998653 222110 111111111 224489999999
Q ss_pred CCCCeEEEEEEEcCCCceE-EEEEEEEeccccCCCCCccccCCCeeeecC-CCeEEEEEEEeeCCCCeEEEEECCEeccc
Q psy7036 78 ETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD-GKRLLFECRIQADPAPTVIWSHSGVQVKE 155 (254)
Q Consensus 78 ~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~~~~~W~~~~~~~~~ 155 (254)
.+..|.|+|++....+..+ ...-+.|... .....+.+ .....+.|-+-....+...|.-+|.....
T Consensus 109 i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~------------~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvttG 176 (251)
T PHA02982 109 PQNLGCFTCEAKDAEGKEETCEKCLEIQKE------------DILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIVTTG 176 (251)
T ss_pred cccCCceEEEEecCCCchheeheeeeEecc------------eEEEEEEecCCeEEEEEEEEeccCCCccEEEeeEEecC
Confidence 9999999999997665433 2455555210 00111222 23456788876554444489877653221
Q ss_pred CC-----cceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcC
Q psy7036 156 DK-----RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 156 ~~-----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
.. ...+.....+..+ .++.+.+--..+--.-.|+....
T Consensus 177 g~~sg~i~~gfn~~segy~y-~~Ikin~s~~~~V~kp~CRy~~~ 219 (251)
T PHA02982 177 GPMSGEIPKGFNQDSEGYRY-NSIKINESVTDHIEKPYCRYWID 219 (251)
T ss_pred CccccccccccccccCceEE-EEEEEcccccccccccEEEEEcC
Confidence 11 1111122223222 24555544344455667877643
No 375
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.64 E-value=0.00011 Score=47.12 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred eecCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCc--ceEEE------eecCCcceEEEEEEeccCCCCCeEEE
Q psy7036 19 QEDEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTR--TVMKT------TPIGTNKYLVALELDDVIETDAGLYK 85 (254)
Q Consensus 19 ~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~ 85 (254)
...-+++|.|+|.+..- +...|.|..+|..+-.-.. ..... .......++++|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34569999999999641 2346899999887632111 11100 00222245567888875544 89999
Q ss_pred EEEEcCCCceEEEEEEEE
Q psy7036 86 VKAKNKMGEVAASINLNF 103 (254)
Q Consensus 86 C~~~~~~~~~~~~~~l~v 103 (254)
|.+.......+..+.|+.
T Consensus 102 CeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEE
Confidence 999877766666666665
No 376
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.48 E-value=0.0011 Score=40.34 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=39.9
Q ss_pred ecCCCeEEEEEEEee-CC--CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCe-EEEEEEEc
Q psy7036 20 EDEGNRLIFECQLLC-NP--KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAG-LYKVKAKN 90 (254)
Q Consensus 20 v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~ 90 (254)
+.+|..+++.|.+.+ .| ...+.|++++..+.... +.-.............+.+.-. ++|.| .|+|.+.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 479999999999965 44 36799999776654432 1110000000111124455443 56665 99998863
No 377
>KOG0613|consensus
Probab=97.37 E-value=0.0012 Score=57.44 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=94.1
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEecccc----------CCCCCccc---cCCCeeeecCCCeEEEEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQI----------DGLAPTFL---KKPSIRQEDDGKRLLFECRI 136 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~----------~~~~~~~~---~~~~~~~~~~g~~~~l~C~~ 136 (254)
...+.+....+.+.|+|...+..+.........+..... ...++.+. .....+....+..+++.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 455666667777888888877666544333322221000 01122111 11223445667788999999
Q ss_pred eeCCCCe-EEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEecCCCCCCC
Q psy7036 137 QADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215 (254)
Q Consensus 137 ~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~ 215 (254)
.+...+. +.|++++..........+....... .-.+.|..+...+.+.|.|.|.|..|.....-...+... .
T Consensus 359 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~t--s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~-----~ 431 (1205)
T KOG0613|consen 359 SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVT--SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEE-----M 431 (1205)
T ss_pred cCCcCCchheeeccccccccccccccccccccc--CcchhhhhcCcccccccccceeccCCcccccchhhcccc-----c
Confidence 8887776 9999987665544332222222211 115778888889999999999998886533322222211 0
Q ss_pred CCCCCeeecCCccccccCC-CCcEEEEEEEeccCCC
Q psy7036 216 EGTKPVFTERPVTKQSDDD-LNDIVIECRLVGEPEP 250 (254)
Q Consensus 216 ~~~~p~~~~~~~~~~~~~g-~~~~~l~C~~~~~p~p 250 (254)
....|.............+ -+.+.+.|...++|.|
T Consensus 432 ~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~ 467 (1205)
T KOG0613|consen 432 PGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP 467 (1205)
T ss_pred CCCCCccccccccccccccCCcccccccCCCCcccc
Confidence 1122222222222222222 1267777777777655
No 378
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.36 E-value=0.0025 Score=39.97 Aligned_cols=72 Identities=7% Similarity=-0.006 Sum_probs=45.3
Q ss_pred CeeeecCCCeEEEEEEEeeCCC---CeEEEEECCEec-------------ccCCcceEEEcCCCCceeeEEEEccCCCCC
Q psy7036 120 SIRQEDDGKRLLFECRIQADPA---PTVIWSHSGVQV-------------KEDKRHKFSIDKDGHSYFASLEIIDVTIED 183 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 183 (254)
....+..|..++|.|.+.++.. -.+.|+|..... ......++....+.......|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3455667888999999877543 357888742210 001112222222222334589999999999
Q ss_pred ceeEEEEE
Q psy7036 184 AGKYKVTA 191 (254)
Q Consensus 184 ~G~y~C~~ 191 (254)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999986
No 379
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.32 E-value=0.0027 Score=38.83 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=27.1
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFS 104 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~ 104 (254)
.|.|+.++..|+|.|.-++.+..|.. ...+++.|.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 79999999999999999999988874 445666553
No 380
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.32 E-value=0.034 Score=42.56 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=95.1
Q ss_pred CceeecCCCeEEEEEEEee--C-CCCceEEEeCCEEee-----------------eCCcceEEEee-cCCcceEEEEEEe
Q psy7036 16 QLRQEDEGNRLIFECQLLC--N-PKPDIVWFRGETQLS-----------------EDTRTVMKTTP-IGTNKYLVALELD 74 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~--~-~~~~v~W~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~l~i~ 74 (254)
..+.+.+|..|.|.|...- . .-....|+..|-++. .+..+.+.... -..+...++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4456677999999999853 3 334688987653321 11222222211 1123446699999
Q ss_pred ccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCccccCCCeeeec-CC-CeEEEEEEEeeC--CCCeEEEEECC
Q psy7036 75 DVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED-DG-KRLLFECRIQAD--PAPTVIWSHSG 150 (254)
Q Consensus 75 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~-~g-~~~~l~C~~~~~--~~~~~~W~~~~ 150 (254)
++....+|.|.|++..+.-......-|.|... ....+. ++ ......|-+-.. .++++.|.-+|
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-------------V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG 418 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-------------VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNG 418 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE-------------EEEEEEeccCceEEEEEEEEecccCCceeEEEEcc
Confidence 99999999999999876544444444555310 011111 22 334567886543 34569999888
Q ss_pred EecccCCcceEEEc----CCCCceeeEEEEccCCCCC-ceeEEEEEEcCCC
Q psy7036 151 VQVKEDKRHKFSID----KDGHSYFASLEIIDVTIED-AGKYKVTAKNELG 196 (254)
Q Consensus 151 ~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~ 196 (254)
..........+... .++ .+.+.+.|.+-...| --.-.|+.....+
T Consensus 419 V~~~G~~~~~l~~~~~~~~~G-c~~seI~I~~s~d~dtV~k~~Cr~~tg~~ 468 (500)
T PHA02914 419 VSFGGEIADALDEHEGAICDG-CEASEIIIMDKRDKDTVKKLSCINITGQG 468 (500)
T ss_pred EEecCeecCcccccccccccc-cceEEEEEecccCccccccceEEEecCCC
Confidence 66543222111100 111 223567787776666 4467888766544
No 381
>PHA02633 hypothetical protein; Provisional
Probab=97.24 E-value=0.00099 Score=36.23 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=31.0
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~ 208 (254)
.|-|-+...+|+|.|.|..+|..-....++.+.|..
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 588889999999999999999877778888887764
No 382
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.10 E-value=0.0044 Score=34.70 Aligned_cols=49 Identities=16% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 127 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
...|.|.|.. ...|.|++ |..+.... +. +|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------~~-----tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------NT-----LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc--------cc-----EEeccCcccCCCcceEecCcc
Confidence 4568999965 24699999 54443221 11 677888888889999999866
No 383
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.05 E-value=0.0085 Score=36.50 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=40.6
Q ss_pred ecCCCeEEEEEEEee-CCC--CeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCce-eEEEEEEcCCC
Q psy7036 124 EDDGKRLLFECRIQA-DPA--PTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAG-KYKVTAKNELG 196 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~~--~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~ 196 (254)
+..|..+++.|.+.+ .|. ..+.|+++...+.... +.-....+. ....+.+++.. ..+|.| .|+|+|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 357999999999875 443 4689998766554322 111000000 00112455554 366666 99999975433
No 384
>PHA03042 CD47-like protein; Provisional
Probab=96.96 E-value=0.0085 Score=43.26 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=45.9
Q ss_pred cCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCce
Q psy7036 21 DEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95 (254)
Q Consensus 21 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 95 (254)
.-++++.+.|.+..- ....+.|..++..+-....... ++|.+... ..-.|+|+|++.+.....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~-----------aSL~~~f~-~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNT-----------SSLKFNFS-KNLSGNYTCEAINKFNKI 96 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcc-----------eEEEEecc-ccCCCceeEEEeecccCc
Confidence 468899999999642 3556999999987754333211 25666543 444899999998766544
Q ss_pred EEEEEEE
Q psy7036 96 AASINLN 102 (254)
Q Consensus 96 ~~~~~l~ 102 (254)
.....|+
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 4444443
No 385
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=96.69 E-value=0.12 Score=36.36 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCceEEEeCCEEeeeCCcc-eEEEeecCCcceEEEEEEecc-CCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCCCCC
Q psy7036 37 KPDIVWFRGETQLSEDTRT-VMKTTPIGTNKYLVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAP 113 (254)
Q Consensus 37 ~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~ 113 (254)
...++|+.||..+....-. ......++.....++|.+... .....-..+|.+.-.... ....+...+ .|
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~--------~P 77 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA--------TP 77 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc--------cc
Confidence 3468999999987633221 112222233344556666322 233345789987633322 222222221 22
Q ss_pred ccccCCC-eeeecCCCeEEEEEEEeeCCC--CeEEEEECCEec
Q psy7036 114 TFLKKPS-IRQEDDGKRLLFECRIQADPA--PTVIWSHSGVQV 153 (254)
Q Consensus 114 ~~~~~~~-~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~ 153 (254)
.....+. .+....|. ..|.+.--|. ..+.|.-++...
T Consensus 78 ~Vy~~P~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 78 SVYPKPRVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred ceecCCEEEEEecCCE---EEEEcceeeCCCeEEEEEECCccC
Confidence 2222222 23333333 3466654442 579999877654
No 386
>KOG1480|consensus
Probab=96.54 E-value=0.00099 Score=54.77 Aligned_cols=76 Identities=22% Similarity=0.431 Sum_probs=57.7
Q ss_pred eEeCCCceeecCCCeEEEEEEE-eeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 89 (254)
|.+.|.-..|..+..+.+.|.. .+.|...++|++++..+.......... .. .+.+..++..|.|+|+|++.
T Consensus 132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~--d~------~li~~~arlsd~~nytc~a~ 203 (909)
T KOG1480|consen 132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS--DH------NLIISQARLSDSGNYTCEAT 203 (909)
T ss_pred hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh--cC------Cccccchhhhhcccceeeee
Confidence 4455666678888899999987 567888999999998776643332211 11 58999999999999999999
Q ss_pred cCCCc
Q psy7036 90 NKMGE 94 (254)
Q Consensus 90 ~~~~~ 94 (254)
|-.+.
T Consensus 204 ni~~~ 208 (909)
T KOG1480|consen 204 NIVAK 208 (909)
T ss_pred hhhcc
Confidence 87764
No 387
>KOG4597|consensus
Probab=96.50 E-value=0.0041 Score=48.35 Aligned_cols=92 Identities=10% Similarity=0.040 Sum_probs=65.0
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCCceEEEe---CCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR---GETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+..-|....+.+|++..++|-+.|.+.+.|.|.+ |...+..... .+.. +-.-.....|.|-+....|+|-|+|.
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~e--~p~vtstcql~ic~ewq~~a~w~tCs 275 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTVE--NPVVTSTCQLVICNEWQADAGWYTCS 275 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCc-cccC--CcceeeeeeEEEcchhhcCCCceeec
Confidence 3344555678899999999999999999999975 3332221111 1110 11112344899999999999999999
Q ss_pred EEcCCCceEEEEEEEEec
Q psy7036 88 AKNKMGEVAASINLNFSR 105 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~v~~ 105 (254)
+.+..|.....+.+.+..
T Consensus 276 ~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 276 ARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred cccccceeeccceeeeec
Confidence 999999988888777653
No 388
>PHA02982 hypothetical protein; Provisional
Probab=96.43 E-value=0.047 Score=37.97 Aligned_cols=81 Identities=11% Similarity=0.281 Sum_probs=49.1
Q ss_pred eeecCCCeEEEEEEEee-CCCCeEEEEECCE-ecccC------------------CcceEEEcCCCCceeeEEEEccCCC
Q psy7036 122 RQEDDGKRLLFECRIQA-DPAPTVIWSHSGV-QVKED------------------KRHKFSIDKDGHSYFASLEIIDVTI 181 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~l~i~~~~~ 181 (254)
+....++.+.|+|.... ..-.+..|..+.. .+... .....+.+. ..|+|+|.++..
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~~i 109 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKPDP 109 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccCCc
Confidence 44556899999998432 2234578886432 22100 001111111 136899999999
Q ss_pred CCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036 182 EDAGKYKVTAKNELGES-NATISLNF 206 (254)
Q Consensus 182 ~d~G~y~C~~~~~~~~~-~~~~~~~v 206 (254)
+..|-|+|.+....+.. .....+.|
T Consensus 110 ~N~GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 110 QNLGCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ccCCceEEEEecCCCchheeheeeeE
Confidence 99999999999866544 33445555
No 389
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.37 E-value=0.0048 Score=39.70 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=45.3
Q ss_pred eecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCc--ceEEEc-------CCCCceeeEEEEccCCCCCceeEE
Q psy7036 123 QEDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKR--HKFSID-------KDGHSYFASLEIIDVTIEDAGKYK 188 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~ 188 (254)
.....+.+.|.|.+... +...+.|..++..+..... ...... .+-....++|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 45568899999998642 2235899998877542211 111000 111112346777764433 89999
Q ss_pred EEEEcCCCcceEEEEEEEe
Q psy7036 189 VTAKNELGESNATISLNFD 207 (254)
Q Consensus 189 C~~~~~~~~~~~~~~~~v~ 207 (254)
|.+.......+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9998877767777776654
No 390
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=96.11 E-value=0.11 Score=30.55 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEE-cCCCceEEEEEEE
Q psy7036 37 KPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK-NKMGEVAASINLN 102 (254)
Q Consensus 37 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~ 102 (254)
.+.+.|+..+........ .+........|+|.+.|.|. +..-.......|.
T Consensus 26 ~~~~~l~~~~~k~~~~~~---------------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK---------------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEECSSCEEEEESS---------------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred ChhheeeccCccccccce---------------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 456778776655543332 45666778899999999994 4433333344443
No 391
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=96.00 E-value=0.092 Score=39.84 Aligned_cols=21 Identities=14% Similarity=0.483 Sum_probs=17.3
Q ss_pred eEEEEEEEeeC-C-CCceEEEeC
Q psy7036 25 RLIFECQLLCN-P-KPDIVWFRG 45 (254)
Q Consensus 25 ~v~l~C~~~~~-~-~~~v~W~~~ 45 (254)
.++|+|.+.|. | ...++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999983 4 457899999
No 392
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.74 E-value=0.14 Score=30.84 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=43.7
Q ss_pred eCCCceeecCCCeEEEEEEEeeC-----CCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 13 QKPQLRQEDEGNRLIFECQLLCN-----PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 13 ~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
..|+...+..|++|+..|.+... ....+.|..++..+..++...+ +...+.+++.+......-.|-|.
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-------n~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-------NDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-------STTEEEEEESS--SSEEEEEEEE
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-------CCeEEEEEEccCCCCCceEEEEE
Confidence 34556678999999999999532 3557999999886665443222 11124677777766666677776
Q ss_pred EE
Q psy7036 88 AK 89 (254)
Q Consensus 88 ~~ 89 (254)
..
T Consensus 81 l~ 82 (89)
T PF06328_consen 81 LA 82 (89)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 393
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.65 E-value=2.5 Score=41.61 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=104.7
Q ss_pred CceeecCCCeEEEEEEEeeCCCCceEEEeCCEEee-eCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE--EEcCC
Q psy7036 16 QLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLS-EDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK--AKNKM 92 (254)
Q Consensus 16 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~ 92 (254)
....+..|+.|.|.-....-....++|..++..-. ...... -.+-...|.|... +.|..
T Consensus 1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------------tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864 1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------------SHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------------EEEccCCceEEEEEEEEccc
Confidence 34456789999998877666777899987653211 111100 1113446777664 45777
Q ss_pred CceEEEEEEEEeccccCCCCCccccCCC--eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036 93 GEVAASINLNFSREQIDGLAPTFLKKPS--IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170 (254)
Q Consensus 93 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
+....+..+.|.+.. ....+..... ...+..|..+.+.-.+.........|..++..-.....
T Consensus 1767 ss~~~s~~V~VqepV---~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~------------ 1831 (2740)
T TIGR00864 1767 GSANASEEVDVQEPI---SGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH------------ 1831 (2740)
T ss_pred cccceeEEEEEEecc---ccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce------------
Confidence 777777777776422 1112211111 11344567777766654333446778776432111100
Q ss_pred eeEEEEccCCCCCceeEEE--EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC
Q psy7036 171 FASLEIIDVTIEDAGKYKV--TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP 248 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p 248 (254)
.. ....+.|.|+- .|.|..+....+..+.|+... -.+........+..|+ .+++.+.....+
T Consensus 1832 -v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I---------~~L~L~as~~~~~~n~-~v~fsa~l~~GS 1895 (2740)
T TIGR00864 1832 -AC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPI---------FGLELKASKKIAAIGE-KVEFQILLAAGS 1895 (2740)
T ss_pred -eE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEec---------ceEEEecccccccCCC-EEEEEEEecCCC
Confidence 01 23457888865 566888888788888877411 1122233333455677 888888776555
Q ss_pred CCceeC
Q psy7036 249 EPTISW 254 (254)
Q Consensus 249 ~p~~~W 254 (254)
.-.+.|
T Consensus 1896 ~Vtf~w 1901 (2740)
T TIGR00864 1896 AVNFRL 1901 (2740)
T ss_pred ceEEEE
Confidence 444444
No 394
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.63 E-value=0.24 Score=30.58 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEE
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGES-NATISLNF 206 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v 206 (254)
.|.|+.++..|+|.|..++.+..|.. ...+.+.|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 79999999999999999999988876 45555555
No 395
>KOG4597|consensus
Probab=95.57 E-value=0.029 Score=43.91 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=58.2
Q ss_pred eecCCCeEEEEEEEeeCCCCeEEEEEC---CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcce
Q psy7036 123 QEDDGKRLLFECRIQADPAPTVIWSHS---GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 199 (254)
.+.++++..++|-+.|.+.+.+.|.+. +..+.-.... ...+--......|.|-+....|+|.|+|.+.+..|...
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq--~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ--TVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCcc--ccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 456788999999999999999999762 2221111110 01111112345799999999999999999999999887
Q ss_pred EEEEEEEec
Q psy7036 200 ATISLNFDS 208 (254)
Q Consensus 200 ~~~~~~v~~ 208 (254)
+.+.+.+..
T Consensus 285 rdv~c~s~~ 293 (560)
T KOG4597|consen 285 RDVPCSSVK 293 (560)
T ss_pred ccceeeeec
Confidence 777666543
No 396
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.01 E-value=0.052 Score=39.27 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=34.5
Q ss_pred CCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 36 PKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 36 ~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
..|.+.|...+. .+.... .+.....+ .|.+.+...+++|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l~gn~--~~nIT~TG------~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNS--YVNITETG------KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCC--eEEEccCc------eEEeeccccccCCceEEEEEEEe
Confidence 468899997654 444332 33333333 79999999999999999887543
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.98 E-value=0.058 Score=39.04 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCeEEEEEC-CEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 141 APTVIWSHS-GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 141 ~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
.|.+.|... +..+... ..+.+.+.| .|.+.+...+++|.|+|......
T Consensus 12 DP~y~W~GP~g~~l~gn--~~~nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGN--SYVNITETG-----KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCC--CeEEEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence 578999864 3444433 234445555 79999999999999999998754
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.94 E-value=0.27 Score=37.41 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=37.3
Q ss_pred eEEEEEEEeeCCCC--eEEEEEC---------C---EecccCCc---------ceEEEcCCCCceeeEEEEccCCCCCce
Q psy7036 129 RLLFECRIQADPAP--TVIWSHS---------G---VQVKEDKR---------HKFSIDKDGHSYFASLEIIDVTIEDAG 185 (254)
Q Consensus 129 ~~~l~C~~~~~~~~--~~~W~~~---------~---~~~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~G 185 (254)
.++|.|.+.|+.+. .++|.|+ + ..+..+.. .....+.++..+.....+ .+..++..
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v-~v~~~~~~ 294 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSV-RVPTDMSN 294 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEE-EeCCCCCC
Confidence 57999999997654 5789999 3 11111110 012233343233323333 34455666
Q ss_pred eEEEEEEcCCC
Q psy7036 186 KYKVTAKNELG 196 (254)
Q Consensus 186 ~y~C~~~~~~~ 196 (254)
.|+|.+.+...
T Consensus 295 ~Y~C~V~Hsgl 305 (338)
T PHA02865 295 QIVCVVFHSTL 305 (338)
T ss_pred CcEEEEEeCCC
Confidence 79999988543
No 399
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.85 E-value=0.42 Score=28.14 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=21.0
Q ss_pred EEEEccCCCCCceeEEEEEE-cCCCcceEEEEE
Q psy7036 173 SLEIIDVTIEDAGKYKVTAK-NELGESNATISL 204 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~~ 204 (254)
......+..+|+|.+.|.|. +..........|
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i 76 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEI 76 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence 46667778899999999995 433333333333
No 400
>PHA03042 CD47-like protein; Provisional
Probab=94.83 E-value=0.26 Score=35.97 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=45.2
Q ss_pred ecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 124 EDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 124 ~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
....+++.+.|.+..- ....+.|..++..+...... ..++|.+.. ...-.|+|+|.|.+.....
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------n~aSL~~~f-~~~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------NTSSLKFNF-SKNLSGNYTCEAINKFNKI 96 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----------cceEEEEec-cccCCCceeEEEeecccCc
Confidence 3457889999997542 24459999998776433221 013566553 3345899999999866555
Q ss_pred eEEEEEE
Q psy7036 199 NATISLN 205 (254)
Q Consensus 199 ~~~~~~~ 205 (254)
+....++
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 5444443
No 401
>PHA03052 Hypothetical protein; Provisional
Probab=94.68 E-value=0.12 Score=28.72 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=29.1
Q ss_pred CCCceeecCCCeEEEEEEEe-e--CCCCceEEEeCCEEeee
Q psy7036 14 KPQLRQEDEGNRLIFECQLL-C--NPKPDIVWFRGETQLSE 51 (254)
Q Consensus 14 ~~~~~~v~~g~~v~l~C~~~-~--~~~~~v~W~~~~~~~~~ 51 (254)
.|+...+..|.+++|.|.+. | ...+.|.|.-|+..+..
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 34667788999999999993 2 33567999999888743
No 402
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.66 E-value=0.37 Score=29.12 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=43.3
Q ss_pred eEEEEEE-EeeCCCCeEEEEECCEecccCCcceEEEcCCC-CceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEE
Q psy7036 129 RLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205 (254)
Q Consensus 129 ~~~l~C~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~ 205 (254)
.+.-.|. +.|.|++.|+|.-+ +............++ ....+.+.+-..+..|.-..+|.+..........+.|+
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~---l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTR---LKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEcc---CCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 4566788 66889999999742 211111111122222 23445666666667777799999988755444444443
No 403
>KOG0613|consensus
Probab=94.58 E-value=0.081 Score=46.76 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=99.1
Q ss_pred eCCCceeecCCCeEEEEEEEeeCCCCc-eEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcC
Q psy7036 13 QKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 13 ~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
.....+.+..+..+++.|...+.+.+. +.||+++.....+..-... .........+.|..+...+.+.|.|.+.|.
T Consensus 339 ~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~ 415 (1205)
T KOG0613|consen 339 VRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPC---PVGTVTSHTYTIKDAGPGEGYFTRVPAVNK 415 (1205)
T ss_pred cccceeccccCcceeecccccCCcCCchheeeccccccccccccccc---ccccccCcchhhhhcCcccccccccceecc
Confidence 344555677888899999998877765 9999987655443311111 111222337889999999999999999999
Q ss_pred CCceEEEEEEEEeccccCCCCCccccCCCeeeecC--CCeEEEEEEEeeCCCC--eEEEEECCEecccCCcceEEEcCCC
Q psy7036 92 MGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD--GKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDG 167 (254)
Q Consensus 92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~--g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~~~ 167 (254)
.|.........|..... +..+............. -+.+.+.|...+++.+ .++|++++-...... .......
T Consensus 416 ~g~~~~~~~~~vs~~~~-gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s---~~l~r~~ 491 (1205)
T KOG0613|consen 416 GGTEQTIAESTVSEEMP-GTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS---VTLTRDV 491 (1205)
T ss_pred CCcccccchhhcccccC-CCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccccc---ccccccc
Confidence 88755444334432211 12222222222222222 3677888887777644 455666543332111 1111111
Q ss_pred CceeeEEEEccCCCCCceeEEEEEEcCCC
Q psy7036 168 HSYFASLEIIDVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 168 ~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 196 (254)
..+|.+......+.+.|.-......+
T Consensus 492 ---~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 492 ---LTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred ---hhhheeeccCCCccchhhhhhhccCC
Confidence 12566666677788887555444433
No 404
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=93.61 E-value=0.49 Score=28.61 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=38.5
Q ss_pred EEEEEEE-eeCCCCceEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC
Q psy7036 26 LIFECQL-LCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG 93 (254)
Q Consensus 26 v~l~C~~-~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 93 (254)
+.-.|.+ .|.|...|+|.-+ |.. ........++.-...+.+.+-.....|.-..+|++....-
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~ 88 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND 88 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc
Confidence 4557985 6789999999842 322 1111112233334445666666777777899999986543
No 405
>KOG1026|consensus
Probab=92.59 E-value=0.37 Score=40.93 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=86.5
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAA 97 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 97 (254)
..+..|..+++.|...+.+.+...|+.++............-. + . ...+.+ +.|...+..+....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--~----~-~~~~~~--------~~c~~E~~~~~~~~ 266 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--S----E-CEVLEN--------DLCIAENAVARSNP 266 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--c----c-ceeeec--------hhhHHHHhhhhcCc
Confidence 4567899999999999999999999987766544322211100 0 0 111111 88998888887766
Q ss_pred EEEEEEeccccCCCCCccccCCCeeeecCCCeEEEEEEE---eeCCCCeEEEEECCEecccCCcceEEEcCC-CCceeeE
Q psy7036 98 SINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRHKFSIDKD-GHSYFAS 173 (254)
Q Consensus 98 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 173 (254)
.+.+.+. .++......... +. .-.|.. .+.+.+...|..++..+............. + .
T Consensus 267 ~v~~~~~------~p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~-----C 329 (774)
T KOG1026|consen 267 SILLVVD------LPKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQ-----C 329 (774)
T ss_pred eeeeEEe------cccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcC-----C
Confidence 6666554 221111110100 00 222332 245666788888776543222211111111 1 2
Q ss_pred EEEccCCCCCceeEEEEEEcCCCcceEEEEEEEe
Q psy7036 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207 (254)
Q Consensus 174 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~ 207 (254)
+........+.|.|.|.+.+..|.........+.
T Consensus 330 ~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 330 LPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred cccCcCcccccCcceeeecccCccccccCcCccc
Confidence 3333335667899999999988765444433333
No 406
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=91.50 E-value=2 Score=25.99 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=47.5
Q ss_pred eEeCCCceeecCCCeEEEEEEEeeCCCC-ceEEEeC--CEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEE
Q psy7036 11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRG--ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVK 87 (254)
Q Consensus 11 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 87 (254)
+.+.|+...|..|+++.+.|... -+.+ .+-|.-. ...+..... -..+.+.|++. | ..-.|.
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~g~~-------------W~~f~LsnV~~-d-s~~~C~ 69 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDSGPQ-------------WKAFQLSNVTE-D-SSPLCF 69 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEEETT-------------EEEEEEEEE-S-C-EEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCCCCc-------------EEEEEEEcccc-C-CeEEEE
Confidence 45678888999999999999985 3333 3344321 111212111 12678888886 4 456788
Q ss_pred EEcCCCceEEEEEEEEe
Q psy7036 88 AKNKMGEVAASINLNFS 104 (254)
Q Consensus 88 ~~~~~~~~~~~~~l~v~ 104 (254)
+.-...+...+..|+|.
T Consensus 70 ~~C~g~Q~~~~~~ItVY 86 (91)
T PF03921_consen 70 FNCSGEQSSASANITVY 86 (91)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEcCCeEEEeEEeeEEe
Confidence 87544455667777776
No 407
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.43 E-value=17 Score=36.52 Aligned_cols=197 Identities=14% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCceeecCCCeEEEEEEEeeCCCCceEEEeCCE-EeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEE--EEEcC
Q psy7036 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGET-QLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKV--KAKNK 91 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~~~~~ 91 (254)
.....+..|+.++|.+.+...+...+.|...+. .........+. -+-..-|.|.. .+.|.
T Consensus 1874 as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-----------------HsY~~~G~Y~VtV~A~N~ 1936 (2740)
T TIGR00864 1874 ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-----------------HSFPRVDDHMVNLRAKNE 1936 (2740)
T ss_pred cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE-----------------eecCCCCcEEEEEEEEec
Confidence 344467789999999998766677888976543 22111111111 11223455544 44566
Q ss_pred CCceEEEEEEEEeccccCCCCCccccCCC-eeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCce
Q psy7036 92 MGEVAASINLNFSREQIDGLAPTFLKKPS-IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170 (254)
Q Consensus 92 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 170 (254)
.+.......+.|.+... .+.+... ...+..|+..++...+....+..+.|+..-..+..... +.....
T Consensus 1937 Vs~~~a~~~V~Vle~V~-----gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~--~~~~G~---- 2005 (2740)
T TIGR00864 1937 VSCAQANLHIEVLEAVR-----GLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL--VIHMGK---- 2005 (2740)
T ss_pred cceeeeeEEEEEEEecc-----ceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc--eeecCC----
Confidence 66666666666654211 1111111 11256788999999987666678999865433332222 111111
Q ss_pred eeEEEEccCCCCCceeEEE--EEEcCCCcceEEEEEEEecCCCCCCCCCCCCeeecCCccccccCCCCcEEEEEEEeccC
Q psy7036 171 FASLEIIDVTIEDAGKYKV--TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEP 248 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p 248 (254)
.++.. ....|.|.- .|.|..+....+..+.|+... ....+...| .....+. .+.+.|.+...+
T Consensus 2006 --~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i-------~~~~L~~~p--~~~~~n~-~v~f~~~~~~~~ 2070 (2740)
T TIGR00864 2006 --DVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDAL-------MDAALQAGP--QDCFTNK-MAQFEAATSPKP 2070 (2740)
T ss_pred --ceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehe-------eeEEEeecC--cceecCc-eEEEEEEEccCC
Confidence 11111 236787765 566877877777777776411 111222222 2344466 888888875443
Q ss_pred C-CceeC
Q psy7036 249 E-PTISW 254 (254)
Q Consensus 249 ~-p~~~W 254 (254)
. ..+.|
T Consensus 2071 ~~v~~~W 2077 (2740)
T TIGR00864 2071 NFMACHW 2077 (2740)
T ss_pred CcEEEEE
Confidence 2 24554
No 408
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=91.35 E-value=2 Score=25.79 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred CCCCCeeEeCCCceee--cCC--CeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCC
Q psy7036 5 EDFAPSFTQKPQLRQE--DEG--NRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80 (254)
Q Consensus 5 ~~~~p~~~~~~~~~~v--~~g--~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 80 (254)
...+|.|+.++....+ ..+ +...|.+.+.+. ...+.||.||..+....... .+.+. ...
T Consensus 7 ~~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~~---~~~ 69 (89)
T PF06832_consen 7 SGSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFWQ---PDR 69 (89)
T ss_pred CCCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEeC---CCC
Confidence 3456677665544433 222 245666666655 44899999999984433221 23332 356
Q ss_pred CeEEEEEEEcCCCce
Q psy7036 81 AGLYKVKAKNKMGEV 95 (254)
Q Consensus 81 ~G~Y~C~~~~~~~~~ 95 (254)
.|.|+-.+....|..
T Consensus 70 ~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 70 PGEHTLTVVDAQGRS 84 (89)
T ss_pred CeeEEEEEEcCCCCE
Confidence 789988887777764
No 409
>PHA03189 UL14 tegument protein; Provisional
Probab=90.27 E-value=3.7 Score=30.81 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=44.8
Q ss_pred CCceeecCCCeEEEEEEEee--CCCCceE-----EEe----------CCEEeeeCCcc-----eEEEeecCCcceEEEEE
Q psy7036 15 PQLRQEDEGNRLIFECQLLC--NPKPDIV-----WFR----------GETQLSEDTRT-----VMKTTPIGTNKYLVALE 72 (254)
Q Consensus 15 ~~~~~v~~g~~v~l~C~~~~--~~~~~v~-----W~~----------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~ 72 (254)
|....+-.|+.|++.|.+-. .|...++ |-. .|..+.++-.. ...+...+. .-..+|.
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~-aq~ltLt 137 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGA-AQRLTLT 137 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccc-eeEEEEE
Confidence 55667889999999999843 3443332 211 12222221111 111111111 1112344
Q ss_pred EeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 73 LDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 73 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
+ ++.-+.+|.|.|+..|..........+.|
T Consensus 138 F-~v~t~taG~Y~CvLrN~tHglv~~rf~iv 167 (348)
T PHA03189 138 F-RVSTSTAGMYECVLRNETHGLVLQRFVIV 167 (348)
T ss_pred E-EEEecccceEEEEeccccceeeeEEeeee
Confidence 4 45567899999999987655333333334
No 410
>PHA03240 envelope glycoprotein M; Provisional
Probab=88.84 E-value=0.76 Score=32.20 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=39.1
Q ss_pred ceeecCCCeEEEEEEEeeCCCCceEEEe-------C-CE---Ee----e--eCCcceEEEeecCC----cceEEEEEEec
Q psy7036 17 LRQEDEGNRLIFECQLLCNPKPDIVWFR-------G-ET---QL----S--EDTRTVMKTTPIGT----NKYLVALELDD 75 (254)
Q Consensus 17 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~-------~-~~---~~----~--~~~~~~~~~~~~~~----~~~~~~l~i~~ 75 (254)
++.+.+|++|+|.-.---.+...+.||+ . |. ++ . ++....+....... ...+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 4567899999996543224677899998 1 11 11 0 01100111111000 12345889999
Q ss_pred cCCCCCeEEE
Q psy7036 76 VIETDAGLYK 85 (254)
Q Consensus 76 ~~~~d~G~Y~ 85 (254)
+..+|.|+|.
T Consensus 112 vn~sd~~nYc 121 (258)
T PHA03240 112 LNLSDAGEYC 121 (258)
T ss_pred EeecCcchhh
Confidence 9999999983
No 411
>PHA03112 IL-18 binding protein; Provisional
Probab=87.81 E-value=5 Score=26.46 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=38.5
Q ss_pred cCCCeEEEEEEEeeC-CC-CceEEEeCC-EEeeeC-C--c--ceEE---EeecCCcceEEEEEEeccCCC-CCeEEEEEE
Q psy7036 21 DEGNRLIFECQLLCN-PK-PDIVWFRGE-TQLSED-T--R--TVMK---TTPIGTNKYLVALELDDVIET-DAGLYKVKA 88 (254)
Q Consensus 21 ~~g~~v~l~C~~~~~-~~-~~v~W~~~~-~~~~~~-~--~--~~~~---~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~ 88 (254)
.+|+++.|+|.+-+. |. .-+.|..++ +..... . . .+.. ......+.....+.+.+++.. +.-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 579999999999753 54 357899655 322100 0 0 0000 000111123346676777644 334788877
Q ss_pred EcCCC
Q psy7036 89 KNKMG 93 (254)
Q Consensus 89 ~~~~~ 93 (254)
....+
T Consensus 116 ~D~~~ 120 (141)
T PHA03112 116 MDLDG 120 (141)
T ss_pred ecCCc
Confidence 65544
No 412
>PHA03052 Hypothetical protein; Provisional
Probab=85.87 E-value=3.7 Score=23.07 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=25.9
Q ss_pred CeeeecCCCeEEEEEEEeeCC---CCeEEEEECCEec
Q psy7036 120 SIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQV 153 (254)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~ 153 (254)
..+.+..|..+++.|.+.-.+ .+.+.|..|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 445677899999999987433 4468999988776
No 413
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=82.82 E-value=15 Score=26.30 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=50.2
Q ss_pred eEEEEECCEecccCCc-ceEEEcCCC-CceeeEEEEccC-CCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCCC
Q psy7036 143 TVIWSHSGVQVKEDKR-HKFSIDKDG-HSYFASLEIIDV-TIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEGT 218 (254)
Q Consensus 143 ~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~-~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 218 (254)
.+.|+.|+..+..... .......+| ....++|.+... ..+..-..+|.+....... ...+...+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~------------ 75 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATA------------ 75 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccc------------
Confidence 5899999998763321 112222234 445567777333 3344558999988755433 22222222
Q ss_pred CCeeecCCccccccCCCCcEEEEEEEeccCCC--ceeC
Q psy7036 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEP--TISW 254 (254)
Q Consensus 219 ~p~~~~~~~~~~~~~g~~~~~l~C~~~~~p~p--~~~W 254 (254)
.|.+...|....-..+ ....|.|.--|.. .+.|
T Consensus 76 ~P~Vy~~P~vsv~F~~---g~AVC~A~CVP~~~v~l~W 110 (211)
T PF02124_consen 76 TPSVYPKPRVSVRFED---GYAVCTARCVPRGNVTLRW 110 (211)
T ss_pred ccceecCCEEEEEecC---CEEEEEcceeeCCCeEEEE
Confidence 2333333322222233 3677888766643 4666
No 414
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.73 E-value=8.3 Score=23.28 Aligned_cols=65 Identities=12% Similarity=0.266 Sum_probs=38.8
Q ss_pred eeecCCCeEEEEEEEeeC-----CCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEE
Q psy7036 122 RQEDDGKRLLFECRIQAD-----PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 192 (254)
..+..|..++..|..... ....+.|..++..+..... ...+++. +.+++.+......-.|.|...
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy---~~in~~~---SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQY---RVINDTV---SSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCE---EEESTTE---EEEEESS--SSEEEEEEEEEC
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHc---ceeCCeE---EEEEEccCCCCCceEEEEEEc
Confidence 356789999999997632 3456999988886654432 2222322 467777776655556777643
No 415
>PHA03283 envelope glycoprotein E; Provisional
Probab=81.89 E-value=27 Score=28.70 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=48.6
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCC--CCCcc-ccCCC------------eeeecCCCeEEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG--LAPTF-LKKPS------------IRQEDDGKRLLFEC 134 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~-~~~~~------------~~~~~~g~~~~l~C 134 (254)
.|.|.+++..++|.|+-...+..+.....+.|.|..+.... .|+.. ...+. ......|+++.+.-
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi 214 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV 214 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence 79999999999999999888776655666677776522211 11211 10000 12345788888866
Q ss_pred EEeeCC-----CCeEEEEE
Q psy7036 135 RIQADP-----APTVIWSH 148 (254)
Q Consensus 135 ~~~~~~-----~~~~~W~~ 148 (254)
...... ...+.|+.
T Consensus 215 ~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 215 HLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEeeccCCCCceEEEEEEE
Confidence 654321 23688986
No 416
>PHA03112 IL-18 binding protein; Provisional
Probab=81.75 E-value=9.2 Score=25.27 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=40.1
Q ss_pred cCCCeEEEEEEEeeC-CC-CeEEEEECC-EecccCCc-----ceE----EEcCCCCceeeEEEEccCCCC-CceeEEEEE
Q psy7036 125 DDGKRLLFECRIQAD-PA-PTVIWSHSG-VQVKEDKR-----HKF----SIDKDGHSYFASLEIIDVTIE-DAGKYKVTA 191 (254)
Q Consensus 125 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~-~~~~~~~~-----~~~----~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~~ 191 (254)
.+++.+.|.|.+.+. |. .-+.|..++ +....... .+. ....-...-.+.|.+.+++.+ +.-.++|..
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 358899999998765 43 358899765 22211100 000 000011122345666776643 333788887
Q ss_pred EcCCCcceEE
Q psy7036 192 KNELGESNAT 201 (254)
Q Consensus 192 ~~~~~~~~~~ 201 (254)
....+..+.+
T Consensus 116 ~D~~~~~k~~ 125 (141)
T PHA03112 116 MDLDGPIKKS 125 (141)
T ss_pred ecCCchhhHH
Confidence 7665544433
No 417
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=81.51 E-value=3.4 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEc
Q psy7036 27 IFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 27 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
+|+|... ...-++||-||..+-.-... ++.+.++ .++|+|+-..
T Consensus 2 tltC~s~--~sLPiswYcN~TRLlRlt~~--------------Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSN--ASLPISWYCNGTRLLRLTQQ--------------TLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred ceecCCC--CCCcccEEECCceeeeecCC--------------eEeeeee----eEEeeecCCC
Confidence 5778764 44558999999876433221 3444333 5788897553
No 418
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.91 E-value=14 Score=22.43 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=44.8
Q ss_pred CCCeeeecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.+....+..|+++.+.|...-..+..+.|.-.= . +.... .+..+ ..+.+.+++. | ....|.+.-....
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L-------~-k~~~~-~g~~W-~~f~LsnV~~-d-s~~~C~~~C~g~Q 76 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL-------S-KTELD-SGPQW-KAFQLSNVTE-D-SSPLCFFNCSGEQ 76 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESSS-------E-EEEEE-EETTE-EEEEEEEE-S-C-EEEEEEEEETTEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEec-------C-CcccC-CCCcE-EEEEEEcccc-C-CeEEEEEEcCCeE
Confidence 345567889999999999854433345553210 0 01111 11112 2577788886 4 4678998765444
Q ss_pred ceEEEEEEEec
Q psy7036 198 SNATISLNFDS 208 (254)
Q Consensus 198 ~~~~~~~~v~~ 208 (254)
..++..|+|..
T Consensus 77 ~~~~~~ItVY~ 87 (91)
T PF03921_consen 77 SSASANITVYK 87 (91)
T ss_dssp EEEEEEEEEEB
T ss_pred EEeEEeeEEeC
Confidence 46777788774
No 419
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=70.55 E-value=17 Score=20.42 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred eeecCCCeEEEEEEEeeCCCCceEEEeCC
Q psy7036 18 RQEDEGNRLIFECQLLCNPKPDIVWFRGE 46 (254)
Q Consensus 18 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~ 46 (254)
..+..|+.+.|...........+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 35778999999887733345678999888
No 420
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=68.42 E-value=15 Score=25.04 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.2
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
.|+|.+.+..|+|.|.-.++-....
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCC
Confidence 6899999999999999988855443
No 421
>PHA02935 Hypothetical protein; Provisional
Probab=67.75 E-value=28 Score=24.49 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=48.6
Q ss_pred EEEEECCEecccCCcceEE-----EcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcc-eEEEEEEEecCCCCCCCCC
Q psy7036 144 VIWSHSGVQVKEDKRHKFS-----IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES-NATISLNFDSDDAPVPGEG 217 (254)
Q Consensus 144 ~~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~~~v~~~~~~~~~~~ 217 (254)
-.||.+++.+......+.. ....-......|.|..++-+|+|.|.-......|.. ..+..+.|+.
T Consensus 69 tswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvka--------- 139 (349)
T PHA02935 69 TSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKA--------- 139 (349)
T ss_pred ceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEe---------
Confidence 5799888765432211110 001111223367888889999999987766666643 3445555542
Q ss_pred CCCeeecCCccccccCCCCcEEEEEEEec
Q psy7036 218 TKPVFTERPVTKQSDDDLNDIVIECRLVG 246 (254)
Q Consensus 218 ~~p~~~~~~~~~~~~~g~~~~~l~C~~~~ 246 (254)
..+............-.++.+.|....
T Consensus 140 --niidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 140 --NIIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred --eeEeccceeeeeccccEEEEEEEEEee
Confidence 112211122222233347888888754
No 422
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=66.95 E-value=21 Score=20.13 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=35.0
Q ss_pred eEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEEEEEE
Q psy7036 143 TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206 (254)
Q Consensus 143 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v 206 (254)
...|+++++.+... .+...... +. +.+-..+.+...|.++..+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i---~l~i~g~r--~R-t~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARI---PLPISGGR--WR-TWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEE---EEeccCCC--EE-EEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 46799998876322 22222222 22 2333344457899999999998887665555544
No 423
>PHA03286 envelope glycoprotein E; Provisional
Probab=66.65 E-value=69 Score=26.03 Aligned_cols=79 Identities=9% Similarity=-0.070 Sum_probs=46.6
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccCCCCCcc-ccC------------CCeeeecCCCeEEEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTF-LKK------------PSIRQEDDGKRLLFECR 135 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~------------~~~~~~~~g~~~~l~C~ 135 (254)
.|.|.+++..++|.|+-...|+.+.. ...+.|.|..+.....++.. ... ........|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 69999999999999999988877654 34455566432111111111 000 11223457998877666
Q ss_pred EeeC-----CCCeEEEEE
Q psy7036 136 IQAD-----PAPTVIWSH 148 (254)
Q Consensus 136 ~~~~-----~~~~~~W~~ 148 (254)
.... ....+.|+.
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 5421 234688986
No 424
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=65.82 E-value=42 Score=23.23 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=37.8
Q ss_pred EEEEe-eCCCCeEEEEECCEecccCCcceE---EEcCCCCceeeEEEEccCCCCCceeEEEEEEcCC
Q psy7036 133 ECRIQ-ADPAPTVIWSHSGVQVKEDKRHKF---SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195 (254)
Q Consensus 133 ~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 195 (254)
.|... -...|.|+|.-....+..+.-... .+........+...|....-.+.-.|.|.+....
T Consensus 113 vCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 47754 356789999876666543322111 1111122345677888777778888999986543
No 425
>KOG0200|consensus
Probab=64.60 E-value=79 Score=27.20 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=55.6
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEeccccCCCCCcc-ccCCCeeeecCCCeEEEEEEEeeCCCCeEEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH 148 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~ 148 (254)
.+.+..+...+.|.|+|.+.+ .. ....+. + .....+.. ...+.......+....+ +...+.+.+.|..
T Consensus 14 ~~~~~~~~~~~~~~y~~~~~~--~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 14 FLIIDSVVPGDKGFYTCLVSN--IN--LIISLD--D--IVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred eEEEEEEEecCCccEEEEEec--Cc--eeeEee--c--ccCcccccccCCCCCcceeeccccee---eeecCCCcceeee
Confidence 678888899999999999998 11 111111 1 00011111 11112222223444444 2233355667765
Q ss_pred CCEecc----cCCcc-----e--EEEcCCCCceeeEEEEccCCCCCceeEEEEEEc
Q psy7036 149 SGVQVK----EDKRH-----K--FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193 (254)
Q Consensus 149 ~~~~~~----~~~~~-----~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 193 (254)
...... ..... . +............+.+.++...+.+.|.|....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 83 NLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 432110 00000 0 000000011223688899999999999999876
No 426
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=62.67 E-value=8.7 Score=31.12 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=12.4
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEeccccC--CCCCc--cc----------cCCCeeeecCCCeEEEEE
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQID--GLAPT--FL----------KKPSIRQEDDGKRLLFEC 134 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~--~~~~~--~~----------~~~~~~~~~~g~~~~l~C 134 (254)
.|.|.+++..|+|.|+-...+..+.. ...+.|.|...... ..+|. +. ..........|+++.+.-
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v 169 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV 169 (439)
T ss_dssp --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence 69999999999999999887666543 33455666542222 11111 10 011122345788888877
Q ss_pred EEeeCC------CCeEEEEE
Q psy7036 135 RIQADP------APTVIWSH 148 (254)
Q Consensus 135 ~~~~~~------~~~~~W~~ 148 (254)
...... ...+.|+.
T Consensus 170 ~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 170 HLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEEEEESSS--EEEEEEEEE
T ss_pred EEEeccCCCCCeeEEEEEEE
Confidence 755321 13588986
No 427
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=62.64 E-value=25 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=21.8
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
-|.|.+.+.+|+|.|.-++.-...+.
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCC
Confidence 59999999999999999988655443
No 428
>PHA03189 UL14 tegument protein; Provisional
Probab=62.58 E-value=68 Score=24.53 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=14.7
Q ss_pred cCCCCCceeEEEEEEcCCC
Q psy7036 178 DVTIEDAGKYKVTAKNELG 196 (254)
Q Consensus 178 ~~~~~d~G~y~C~~~~~~~ 196 (254)
++..+.+|.|.|...|..-
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 3556779999999998643
No 429
>PHA03240 envelope glycoprotein M; Provisional
Probab=57.35 E-value=28 Score=24.83 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred eeEEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 171 FASLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 171 ~~~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.++|.|-++..+|.|+|.-......|.
T Consensus 104 NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 104 NSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred cceEEEEEEeecCcchhhhccCCCCCC
Confidence 358999999999999986554444443
No 430
>COG5475 Uncharacterized small protein [Function unknown]
Probab=55.42 E-value=27 Score=18.78 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=17.5
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
.++++.... .|.|.|...+..|....
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~ 44 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGVKRE 44 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCcccc
Confidence 345554433 38999999998885543
No 431
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=54.75 E-value=44 Score=19.93 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=33.7
Q ss_pred eEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceE
Q psy7036 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200 (254)
Q Consensus 129 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 200 (254)
...|.+.+.+. ...+.|+.|+..+....... .+.+ .....|.|+..+.+..|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~------------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH------------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC------------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 34445555455 44899999999883332211 1222 224678899998887776543
No 432
>PHA03282 envelope glycoprotein E; Provisional
Probab=47.40 E-value=69 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEccCCCCCceeEEEEEEcC
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNE 194 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~ 194 (254)
+|.|.+++.+|+|.|+..+...
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred eEEEeeccccCCceEEEEecCC
Confidence 7999999999999999997543
No 433
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=45.26 E-value=71 Score=19.59 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=26.5
Q ss_pred CCCeeEeCCCceeecCCCeEEEEEEEee----CC-CCceEEEeCCEEeee
Q psy7036 7 FAPSFTQKPQLRQEDEGNRLIFECQLLC----NP-KPDIVWFRGETQLSE 51 (254)
Q Consensus 7 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~----~~-~~~v~W~~~~~~~~~ 51 (254)
++-++++.|.. +..|.+-.+.|.+.. .| ..++.|+.++..+..
T Consensus 2 FPDqLtVSP~~--LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 2 FPDQLTVSPEA--LVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp --SEEEEESSS--B-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred CCcceeEChhH--hccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 34566676654 558888899999854 22 347899999887754
No 434
>PHA03289 envelope glycoprotein I; Provisional
Probab=42.76 E-value=70 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.3
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
.|.|.+.+..|+|.|.-.++-....
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCc
Confidence 7899999999999999998855443
No 435
>PHA03282 envelope glycoprotein E; Provisional
Probab=42.67 E-value=63 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=24.8
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEe
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFS 104 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~ 104 (254)
+|.|.+++.+|+|.|+-.+...... ....+.|.|.
T Consensus 125 tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 125 TLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred eEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 7999999999999999987533222 3344555554
No 436
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=42.08 E-value=1.2e+02 Score=21.17 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=37.1
Q ss_pred EEEee-CCCCceEEEeCCEEeeeCCcceEE--EeecCCcceEEEEEEeccCCCCCeEEEEEEEcCC
Q psy7036 30 CQLLC-NPKPDIVWFRGETQLSEDTRTVMK--TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKM 92 (254)
Q Consensus 30 C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 92 (254)
|.... ...|.++|......+.++.-.... ..+..=....+.+.+...+-.|+-.|.|.+...+
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 55533 357889998776666554322111 1111111223457788888889999999887554
No 437
>PHA03290 envelope glycoprotein I; Provisional
Probab=40.93 E-value=77 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=25.8
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEec
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSR 105 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~ 105 (254)
.|+|.+.+..|+|.|.-.++-.... +.-...+.|..
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vyp 167 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVYP 167 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEec
Confidence 7899999999999999999855432 33344444543
No 438
>PHA03283 envelope glycoprotein E; Provisional
Probab=39.98 E-value=2.3e+02 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=29.0
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcceEEEEEEEec
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDS 208 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~~~v~~ 208 (254)
.|.|.+.+.+++|.|+-..++..+.....+.+.|+.
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 799999999999999999998766445556666654
No 439
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.82 E-value=26 Score=28.57 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.3
Q ss_pred EEEEeccCCCCCeEEEEEEEc
Q psy7036 70 ALELDDVIETDAGLYKVKAKN 90 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~ 90 (254)
.|++.|+...++|.|.|++.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 599999999999999999874
No 440
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=39.65 E-value=71 Score=17.97 Aligned_cols=58 Identities=12% Similarity=0.282 Sum_probs=34.1
Q ss_pred ceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy7036 39 DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103 (254)
Q Consensus 39 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 103 (254)
...||++++....- .+.... +... +..-....+...|.++..+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i---~l~i~g-~r~R---t~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARI---PLPISG-GRWR---TWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEE---EEeccC-CCEE---EEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 46899999875431 111110 0011 2333344458899999999988888665555544
No 441
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.01 E-value=73 Score=25.19 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.6
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc--eEEEEEEEEe
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFS 104 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~ 104 (254)
.|.|.+.+..|+|.|.-.++-.... +...+.+.|.
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy 165 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVY 165 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEe
Confidence 7899999999999999999855433 3334444444
No 442
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=38.26 E-value=2.8e+02 Score=24.36 Aligned_cols=189 Identities=11% Similarity=0.066 Sum_probs=97.6
Q ss_pred ecCCCeEEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCC------
Q psy7036 20 EDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMG------ 93 (254)
Q Consensus 20 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------ 93 (254)
...|+.+.|.+.+.|.....++..-.|.......-.. ...+ +-.+..+|.|.-.+.-...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~-----------~n~~---~w~P~~~G~Y~I~v~VKDk~S~~ey 367 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIR-----------NNIY---TWKPKIAGKYSITLWVKDISSKGEY 367 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeeccccc-----------cceE---EEeeCCCceEEEEEEEEcCcCcccc
Confidence 4589999999999875555554433454432211100 0022 2235568888887653221
Q ss_pred ceEEEEEEEEeccccCCCCCcc--ccCCCeeeecCCCeEEEEEEEeeCCCCeEE-E-EECCEecccCCcceEEEcCCCCc
Q psy7036 94 EVAASINLNFSREQIDGLAPTF--LKKPSIRQEDDGKRLLFECRIQADPAPTVI-W-SHSGVQVKEDKRHKFSIDKDGHS 169 (254)
Q Consensus 94 ~~~~~~~l~v~~~~~~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~-W-~~~~~~~~~~~~~~~~~~~~~~~ 169 (254)
.+...+...+.... ..|..+ ...+.......|+.+.+.+.+.+.....+. | .++|..+.... ...+.
T Consensus 368 D~~~~v~f~i~~~~--~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~-----Y~~~~-- 438 (667)
T PRK14081 368 EDKSSIDYTIEEKS--KEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKID-----YGKNN-- 438 (667)
T ss_pred cceEEEEEEEcccC--CCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEee-----ccccc--
Confidence 13444555554211 011111 111222345569999999998876544433 3 34665543211 11111
Q ss_pred eeeEEEEccCCCCCceeEEEEEE--cCCCc----ceEEEEEEEecCCCCCCCCCCCCe-ee--cCCccccccCCCCcEEE
Q psy7036 170 YFASLEIIDVTIEDAGKYKVTAK--NELGE----SNATISLNFDSDDAPVPGEGTKPV-FT--ERPVTKQSDDDLNDIVI 240 (254)
Q Consensus 170 ~~~~l~i~~~~~~d~G~y~C~~~--~~~~~----~~~~~~~~v~~~~~~~~~~~~~p~-~~--~~~~~~~~~~g~~~~~l 240 (254)
.+.+ .+.-+|.|+-.+. +.... ....+.+.|.. ..|. +. ..+.......|+ .+++
T Consensus 439 ---~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e---------~~P~~i~~il~~~~~~~~vg~-~i~~ 502 (667)
T PRK14081 439 ---WVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHE---------YIPAEIDYILLPVKEYYLVGD-DIEI 502 (667)
T ss_pred ---EEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEec---------cCceeeeeEEecccccEEeCC-EEEE
Confidence 2332 3467899987665 43332 24555566643 1232 22 234444567788 9999
Q ss_pred EEEEecc
Q psy7036 241 ECRLVGE 247 (254)
Q Consensus 241 ~C~~~~~ 247 (254)
.|.+++.
T Consensus 503 ~~~~~~~ 509 (667)
T PRK14081 503 EVIIQNT 509 (667)
T ss_pred EEEEeCC
Confidence 9998764
No 443
>PHA03289 envelope glycoprotein I; Provisional
Probab=37.74 E-value=1e+02 Score=23.80 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.|.|.+.+.+|+|.|.-++.-....
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCc
Confidence 6999999999999999999876553
No 444
>PHA03281 envelope glycoprotein E; Provisional
Probab=36.48 E-value=2.7e+02 Score=23.63 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=47.3
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc-eEEEEEEEEeccccCC-CCCccccCCC----------eeeecCCCeEEEEEEEe
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDG-LAPTFLKKPS----------IRQEDDGKRLLFECRIQ 137 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~-~~~~~~~~~~----------~~~~~~g~~~~l~C~~~ 137 (254)
.|.|.+++..++|.|+--.+...|. ....+.|.|....... ..|.+..... ......|+++.+.....
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~ 378 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQ 378 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEe
Confidence 7899999999999999887755553 3445666765433111 1111221111 12245788887777654
Q ss_pred eC-----CCCeEEEEE
Q psy7036 138 AD-----PAPTVIWSH 148 (254)
Q Consensus 138 ~~-----~~~~~~W~~ 148 (254)
.. ....+.|+.
T Consensus 379 s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 379 YKIHDAPFDLLLEWLY 394 (642)
T ss_pred eeccCCCceeEEEEEE
Confidence 32 134688986
No 445
>PHA03290 envelope glycoprotein I; Provisional
Probab=35.31 E-value=1.2e+02 Score=23.68 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCc
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGE 197 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~ 197 (254)
.|.|.+.+.+|+|.|.-++.-....
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~ 154 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSR 154 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCc
Confidence 6999999999999999999865443
No 446
>KOG1026|consensus
Probab=35.30 E-value=79 Score=27.88 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=45.7
Q ss_pred eecCCCeEEEEEEEeeCCCCeEEEEECCEecccCCcceEEEcCCCCceeeEEEEccCCCCCceeEEEEEEcCCCcceEEE
Q psy7036 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202 (254)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 202 (254)
.+..+..+++.|...+.+-+...|+.++..............+. ...+. .+.|.++|..+.....+
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~------~~~~~--------~~~c~~E~~~~~~~~~v 268 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSE------CEVLE--------NDLCIAENAVARSNPSI 268 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecccccccCCCccccccccc------ceeee--------chhhHHHHhhhhcCcee
Confidence 34578899999999999999999998765543322211111100 11111 17899999888877666
Q ss_pred EEEEec
Q psy7036 203 SLNFDS 208 (254)
Q Consensus 203 ~~~v~~ 208 (254)
.+.+..
T Consensus 269 ~~~~~~ 274 (774)
T KOG1026|consen 269 LLVVDL 274 (774)
T ss_pred eeEEec
Confidence 665553
No 447
>PHA03292 envelope glycoprotein I; Provisional
Probab=34.96 E-value=1e+02 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
.|.|.+.+.+|+|.|.-++.-.....
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~~ 154 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAPT 154 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCcc
Confidence 69999999999999999998765443
No 448
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=30.72 E-value=52 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.418 Sum_probs=14.5
Q ss_pred eeEeCCCceeecCCCeEEEEEEEe
Q psy7036 10 SFTQKPQLRQEDEGNRLIFECQLL 33 (254)
Q Consensus 10 ~~~~~~~~~~v~~g~~v~l~C~~~ 33 (254)
.+...|-...+..|++|.++|...
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~ 57 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELK 57 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEE
T ss_pred EEEEeccccccCCCCEEEEEEEEe
Confidence 344556566788999999999985
No 449
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=28.76 E-value=1.4e+02 Score=18.06 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=10.2
Q ss_pred CeEEEEEEEeeCC-CCceEEEe
Q psy7036 24 NRLIFECQLLCNP-KPDIVWFR 44 (254)
Q Consensus 24 ~~v~l~C~~~~~~-~~~v~W~~ 44 (254)
....|.|.+.+.. .-.++--+
T Consensus 16 ~etSL~Ci~s~W~s~esitigr 37 (96)
T PF10430_consen 16 SETSLTCIASDWSSHESITIGR 37 (96)
T ss_dssp S-EEEEEEE-SS--SS--EEEE
T ss_pred CceeEEEEecCCcCCCcEEecc
Confidence 3459999997743 33455444
No 450
>PHA03286 envelope glycoprotein E; Provisional
Probab=27.84 E-value=2.7e+02 Score=22.93 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.5
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcce-EEEEEEEec
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNFDS 208 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~~-~~~~~~v~~ 208 (254)
.|.|.+.+..++|.|+-...|..+... ..+.+.|..
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 699999999999999999998766654 445566643
No 451
>PHA03291 envelope glycoprotein I; Provisional
Probab=26.97 E-value=1.5e+02 Score=23.25 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 70 ALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
.|.|.+....|+|.|.-.++-....
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat 154 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGAT 154 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCc
Confidence 7899999999999999999865444
No 452
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=26.89 E-value=4e+02 Score=23.44 Aligned_cols=52 Identities=23% Similarity=0.352 Sum_probs=33.0
Q ss_pred EEEEEEEeeCCCCceEEEeCCEEeeeCCcceEEEeecCCcceEEEEEEeccCCCCCeEEEEEEEcCCCc
Q psy7036 26 LIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94 (254)
Q Consensus 26 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 94 (254)
+.|.-...| ....+.|+.||..+......+. . .-...+.|.|+-.+....|.
T Consensus 672 ~~l~l~~~g-~~~~~~W~lng~~l~~~~~~~~-------------~---~w~~~~~G~~~ltVid~~G~ 723 (733)
T COG4953 672 VTLKLIAQG-GRGPIYWFLNGEPLGEASRNRP-------------V---TWKPEDAGYYKLTVIDASGR 723 (733)
T ss_pred eEEEEEcCC-CcceeEEEeCCcCccccccCCc-------------c---eeccCCCCeEEEEEEccCCc
Confidence 444444432 2456999999998876433211 1 22356789999999877775
No 453
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=25.09 E-value=1.5e+02 Score=18.89 Aligned_cols=20 Identities=45% Similarity=0.601 Sum_probs=14.7
Q ss_pred EEEEccCCCCCceeEEEEEE
Q psy7036 173 SLEIIDVTIEDAGKYKVTAK 192 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~ 192 (254)
+|.|-.-+.+|.|.|....+
T Consensus 104 sL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 104 SLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp EEEETT--GGG-EEEEEEEE
T ss_pred eeehhccccccCceEEEEee
Confidence 78999999999999988765
No 454
>PHA03291 envelope glycoprotein I; Provisional
Probab=24.10 E-value=2.1e+02 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=22.1
Q ss_pred EEEEccCCCCCceeEEEEEEcCCCcc
Q psy7036 173 SLEIIDVTIEDAGKYKVTAKNELGES 198 (254)
Q Consensus 173 ~l~i~~~~~~d~G~y~C~~~~~~~~~ 198 (254)
.|.|.+...+|+|.|..++.-.....
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~ 155 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATN 155 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcc
Confidence 68999999999999999998765544
No 455
>KOG3611|consensus
Probab=23.63 E-value=2.2e+02 Score=25.34 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.1
Q ss_pred EEEEeccCCCCCeEEEEEEEcC
Q psy7036 70 ALELDDVIETDAGLYKVKAKNK 91 (254)
Q Consensus 70 ~l~i~~~~~~d~G~Y~C~~~~~ 91 (254)
.+.+..++..|.|.|.|.+...
T Consensus 613 ~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 613 GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred ceeEEEEeeccCcccccccccC
Confidence 3777888899999999988743
No 456
>PF15096 G6B: G6B family
Probab=22.99 E-value=2.8e+02 Score=19.58 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=18.1
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy7036 76 VIETDAGLYKVKAKNKMGEVAASINLNFSR 105 (254)
Q Consensus 76 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 105 (254)
+...|+|.|.|..... .++...|.|..
T Consensus 81 Ls~GDSGTFfCkGr~e---~ESRT~LhVLG 107 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE---EESRTVLHVLG 107 (224)
T ss_pred hhcCCccceEecCccc---ccceeeeeeec
Confidence 3578999999985432 34455677764
No 457
>PRK09919 anti-adapter protein IraM; Provisional
Probab=21.56 E-value=1.9e+02 Score=18.50 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=13.1
Q ss_pred ceEEEeCCEEeeeCCcce
Q psy7036 39 DIVWFRGETQLSEDTRTV 56 (254)
Q Consensus 39 ~v~W~~~~~~~~~~~~~~ 56 (254)
-+.||+.+-.+..+..+.
T Consensus 29 lilWY~~d~~L~pG~~i~ 46 (114)
T PRK09919 29 LILWYQADIFLPPGSIIT 46 (114)
T ss_pred EEEEEeeeEEeCCCCEEE
Confidence 478999888877765543
No 458
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.31 E-value=1.8e+02 Score=16.32 Aligned_cols=21 Identities=14% Similarity=0.529 Sum_probs=13.2
Q ss_pred ecCCCeEEEEEEEeeCCCCceEEEe
Q psy7036 20 EDEGNRLIFECQLLCNPKPDIVWFR 44 (254)
Q Consensus 20 v~~g~~v~l~C~~~~~~~~~v~W~~ 44 (254)
|..|++++|. |.+...|+||+
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4456666653 44556799994
No 459
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.25 E-value=1.8e+02 Score=16.44 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=18.4
Q ss_pred cCCCeEEEEEEEee-CCCCceEEEeCCE
Q psy7036 21 DEGNRLIFECQLLC-NPKPDIVWFRGET 47 (254)
Q Consensus 21 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~ 47 (254)
..|+.+.|.....+ .....+.|...+.
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg 39 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDG 39 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCC
Confidence 37889999888754 2355678876444
Done!