RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7036
(254 letters)
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 179 bits (457), Expect = 5e-56
Identities = 56/248 (22%), Positives = 94/248 (37%), Gaps = 27/248 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F KP G F+C + I W + ++ M
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA--- 61
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE-DD 126
L + V + DAG Y A N G+ + S L P F+KK +
Sbjct: 62 --TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQ 113
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ +EC+I P V+W +++E + + S + LE+ ++++ED+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGD 169
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
Y A N G ++++ SL PVF ++P ++ D+ +EC L G
Sbjct: 170 YTCEAHNAAGSASSSTSLKVKE----------PPVFRKKPHPVETLKG-ADVHLECELQG 218
Query: 247 EPEPTISW 254
P +SW
Sbjct: 219 TPPFQVSW 226
Score = 155 bits (394), Expect = 1e-46
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 8 APSFTQKPQ-LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-IGTN 65
P F +K + R + +EC++ +P+ ++W++ ET++ E ++ M +
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV- 156
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
LE+ ++ D+G Y +A N G ++S +L P F KKP +
Sbjct: 157 -----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 205
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G + EC +Q P V W +++ K++K + S+ I++V D G
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT----SIHILNVDSADIG 261
Query: 186 KYKVTAKNELGESNATISLN 205
+Y+ A N++G S+
Sbjct: 262 EYQCKASNDVGSYTCVGSIT 281
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 187 bits (476), Expect = 5e-56
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 20/247 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F + + + G + +C++ P+ I W++ T+L M+ +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS-- 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L ++ V +D G Y KA+N +G VA+S L + L P+F +K E G
Sbjct: 63 ---LVINKVDHSDVGEYTCKAENSVGAVASSAVLVI---KERKLPPSFARKLKDVHETLG 116
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ FECRI V W G +K+D + S + +L+I+ G+Y
Sbjct: 117 FPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA----TLQILQTDQSHVGQY 172
Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
+A N LG ++++ L + P F +PV+ +C + G
Sbjct: 173 NCSASNPLGTASSSAKLT-------LSEHEVPPFFDLKPVSVDLALG-ESGTFKCHVTGT 224
Query: 248 PEPTISW 254
I+W
Sbjct: 225 APIKITW 231
Score = 178 bits (453), Expect = 1e-52
Identities = 49/252 (19%), Positives = 94/252 (37%), Gaps = 22/252 (8%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
PSF +K + E G + FEC++ + + W++ L +D
Sbjct: 96 KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
L++ ++ G Y A N +G ++S L S ++ P F KP
Sbjct: 156 VAT-----LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV---PPFFDLKPVSV 207
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
G+ F+C + + W+ +++ +K ++ ++ +L ++ VT
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA----TLTVLKVTKG 263
Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
DAG+Y A N G+ + + L P F ++ + EC
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQLGVQE----------PPRFIKKLEPSRIVKQDEHTRYEC 313
Query: 243 RLVGEPEPTISW 254
++ G PE + W
Sbjct: 314 KIGGSPEIKVLW 325
Score = 163 bits (414), Expect = 4e-47
Identities = 48/249 (19%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 8 APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTR-TVMKTTPIGTN 65
P F +K + + + +EC++ +P+ ++W++ ET++ E ++ + +
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV- 348
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
LE+ ++ D+G Y +A N G ++S +L P F KKP +
Sbjct: 349 -----LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKKPHPVETL 397
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G + EC +Q P V W +++ K++K + S+ I++V D G
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT----SIHILNVDSADIG 453
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
+Y+ A N++G S+ + P F ++ + ++ ++ +
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKA----------PPRFVKKLSDISTVVG-EEVQLQATIE 502
Query: 246 GEPEPTISW 254
G +++W
Sbjct: 503 GAEPISVAW 511
Score = 141 bits (358), Expect = 4e-39
Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 14/198 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F +KP + +G + EC+L P + W + + +L + + + +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENF 438
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L ++ + +V D G Y+ KA N +G ++ P F+KK S G
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------PPRFVKKLSDISTVVG 492
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ + + I+ +V W ++ + + I + A+L+ +AGKY
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDN-IWISYSENI--ATLQFSRAEPANAGKY 549
Query: 188 KVTAKNELGESNATISLN 205
KNE G +L+
Sbjct: 550 TCQIKNEAGTQECFATLS 567
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 169 bits (431), Expect = 3e-53
Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 10/198 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP+FTQ Q EG+ FE + P P++ WFR +S T ++ +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR-- 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + V + ++G Y +KA N G+ ++ L + + P F+++ G
Sbjct: 63 -AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV---KAETAPPNFVQRLQSMTVRQG 118
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
++ + R+ P P V + G +++ + S + D + SL I + ED+G Y
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY----SLLIAEAYPEDSGTY 174
Query: 188 KVTAKNELGESNATISLN 205
V A N +G + +T L
Sbjct: 175 SVNATNSVGRATSTAELL 192
Score = 122 bits (309), Expect = 6e-35
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
APTF + +G FE I P P V W G + I
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA- 63
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L I VT ++G+Y + A N G++ +T L V E P F +R +
Sbjct: 64 -KLTIPAVTKANSGRYSLKATNGSGQATSTAELL-------VKAETAPPNFVQRLQSMTV 115
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
+ + ++ R+ G P P + +
Sbjct: 116 RQG-SQVRLQVRVTGIPTPVVKF 137
Score = 76.3 bits (188), Expect = 3e-17
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AE P+F Q+ Q +G+++ + ++ P P + ++R ++ I
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQ-----IS 153
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L +L + + D+G Y V A N +G ++ L
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 162 bits (412), Expect = 6e-49
Identities = 50/270 (18%), Positives = 97/270 (35%), Gaps = 31/270 (11%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTT 60
GI P F + ++ +C++ + IVW++ E ++S D + K
Sbjct: 1 GIDPFTGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-- 57
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS-----REQIDGLAPTF 115
+ L + + + DAG+Y+V K+ G+ + + L ++
Sbjct: 58 -----DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS 112
Query: 116 LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
I+ +G +L V WSH+G ++ R K + + L+
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQ 167
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDD-----------APVPGEGTKPVFTE 224
I + T D GKY + + T+ L+ + D A + + V
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P + + + C + G+P P +SW
Sbjct: 228 LPDVVTIQEG-KALNLTCNVWGDPPPEVSW 256
Score = 138 bits (348), Expect = 2e-39
Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 24/216 (11%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+++ EG +L + W + + R +KT G
Sbjct: 106 CKKIALSATDLKIQSTAEGIQLYSFVTYY-VEDLKVNWSHNGSAIRYSDR--VKTGVTGE 162
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL------------- 111
+ L++++ D G Y ++ + +++L+
Sbjct: 163 Q---IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 219
Query: 112 --APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
A P + +GK L C + DP P V W + + D + +
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
I V+ D+GKY + KN+ G + +++
Sbjct: 280 ---YFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
Score = 78.4 bits (193), Expect = 3e-17
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
++ A P + EG L C + +P P++ W + E L+ D +K
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
T ++ V D+G Y + KNK G + ++
Sbjct: 277 RT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 154 bits (391), Expect = 4e-47
Identities = 40/199 (20%), Positives = 81/199 (40%), Gaps = 9/199 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
AP F ++ + + C++ +PKP + W+R ++ ++ + ++ G +
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH- 62
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + V + DA +Y+V+A N+ G V+ + +L P L+
Sbjct: 63 ---QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV-EVPAKIHLPKTLEGMGAVHALR 118
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + + P P + W + + ++ + + S + V +DAG
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS---LVFPNGVERKDAGF 175
Query: 187 YKVTAKNELGESNATISLN 205
Y V AKN G T+ L+
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194
Score = 122 bits (307), Expect = 1e-34
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGH 168
+AP F ++ C++ P P V W G ++ D +++ K G+
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
L I VT +DA Y+V A N+ G + T SL + VP + P E
Sbjct: 62 H---QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE-----VPAKIHLPKTLEGMGA 113
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
+ + I+ G+P+P I+W
Sbjct: 114 VHALRG-EVVSIKIPFSGKPDPVITW 138
Score = 78.6 bits (194), Expect = 5e-18
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
A+ P + G + + P P I W +G+ + + +
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGH--YQVIVTR 157
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ L + + V DAG Y V AKN+ G ++ L+
Sbjct: 158 SFTSL--VFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 153 bits (387), Expect = 3e-45
Identities = 50/250 (20%), Positives = 93/250 (37%), Gaps = 19/250 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F ++P+ + G F CQ +PKP + W + +++ ++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEF----DESA 61
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGEVAASINLNFSRE-QIDGLAPTFLKKPSIRQED 125
L + + D +Y+ A+N +GE+ L RE Q+ P P ++ +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDA 184
+ C +P P + W + V + + G +L+I D
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG-----ALQIESSEETDQ 176
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
GKY+ A N G ++ + V + P F+ P++ + ++ I C
Sbjct: 177 GKYECVATNSAGVRYSS------PANLYVRVQNVAPRFSILPMSHEIMPG-GNVNITCVA 229
Query: 245 VGEPEPTISW 254
VG P P + W
Sbjct: 230 VGSPMPYVKW 239
Score = 126 bits (317), Expect = 5e-35
Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNK 66
P+ PQL+ + C NP P+I WF+ + +K G
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA-- 165
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
L+++ ETD G Y+ A N G ++ NL ++ +AP F P +
Sbjct: 166 ----LQIESSEETDQGKYECVATNSAGVRYSSPANL---YVRVQNVAPRFSILPMSHEIM 218
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G + C P P V W + + + ++D+
Sbjct: 219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG----------RNVLELTDVKDSA 268
Query: 186 KYKVTAKNELGESNATISLN 205
Y A + LG A +
Sbjct: 269 NYTCVAMSSLGVIEAVAQIT 288
Score = 69.5 bits (170), Expect = 4e-14
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
++ AP F+ P + G + C + +P P + W +G L+ + P+G
Sbjct: 202 QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-----MPVGR 256
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L+ D+ Y A + +G + A +
Sbjct: 257 ------NVLELTDVKDSANYTCVAMSSLGVIEAVAQIT 288
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 147 bits (372), Expect = 3e-44
Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 19/208 (9%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G AP ++ + G CQ++ P PDI W+R +L + + M
Sbjct: 1 GAMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMS--- 57
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
++ L + + D G+Y A N++GEV S L P F +
Sbjct: 58 --SDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA------TPQFHPGYPL 109
Query: 122 RQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
+++ G L P P + W H ++ + + L + +
Sbjct: 110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYT----HLVMKN 165
Query: 179 VTIE-DAGKYKVTAKNELGESNATISLN 205
V + AGKYKV N G +A + +
Sbjct: 166 VQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 118 bits (297), Expect = 5e-33
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
+ G AP K+ G+ C+I P P + W G ++ + +++K S D
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
H +L ++ ED G Y A NE+GE + L + P F
Sbjct: 63 H----TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA----------TPQFHPGYP 108
Query: 228 TKQSDDDL--NDIVIECRLVGEPEPTISW 254
K+ + + + +G P P ++W
Sbjct: 109 LKEKYYGAVGSTLRLHVMYIGRPVPAMTW 137
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 148 bits (376), Expect = 1e-43
Identities = 36/264 (13%), Positives = 86/264 (32%), Gaps = 27/264 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + +D L FEC PK + W + + R +++
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVES-----KGN 56
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASI------NLNFSREQIDGLAPTFLKKPSI 121
+ D+ D G+Y + G ++ + + +K
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 122 RQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ + ++ F + + V + + ++ E ++K ID++ + + +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII--EMFMEKLQ 174
Query: 181 IEDAGKYKVTAKNELGESNATISLNFD---------SDDAPVPGEGTKPVFTERPVTKQS 231
ED G Y ++ +++T+ L D P F E + +
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 234
Query: 232 DDDLNDIVIECRLVGE-PEPTISW 254
+ +++++C++ E I W
Sbjct: 235 GEC--NVLLKCKVANIKKETHIVW 256
Score = 122 bits (307), Expect = 2e-33
Identities = 34/213 (15%), Positives = 81/213 (38%), Gaps = 25/213 (11%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
F + + E ++ F Q + + + E ++ E + M N
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---N 162
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-------------FSREQIDGLA 112
++ + ++ + + D G Y + ++ +++ L +E I
Sbjct: 163 TGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQG 222
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P F++ S + +L +C++ T ++W ++ D++H F
Sbjct: 223 PHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI------ 275
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
+L I + + +DAG Y+V K++ G+ + + L
Sbjct: 276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 97.4 bits (242), Expect = 5e-24
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 7/147 (4%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G+ P + +D L FEC P WS V ++ R + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKT- 58
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK--PVFTERPV 227
+ D+ ++D G Y + G +++ + + K V + +
Sbjct: 59 ---KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSEL 115
Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + +++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNY 142
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 154 bits (391), Expect = 4e-43
Identities = 49/250 (19%), Positives = 89/250 (35%), Gaps = 27/250 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P Q Q + G + +C NP P+I W +++ + R +
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+ L + V D GLYK AK+K+G S LN ++++ + G
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-------YGLPYIRQMEKKAIVAG 541
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI-EDAGK 186
+ L+ C + P +++W + +++ K + +G +L I +V D
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQK--VFPNG-----TLIIENVERNSDQAT 594
Query: 187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y AKN+ G S ++ + V P + + + C +
Sbjct: 595 YTCVAKNQEGYSARGSLEVQ-------VMV---LPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Query: 246 GEPEP-TISW 254
G P I W
Sbjct: 645 GGDLPLNIDW 654
Score = 150 bits (379), Expect = 1e-41
Identities = 50/261 (19%), Positives = 87/261 (33%), Gaps = 20/261 (7%)
Query: 3 IAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
A+ P F ++P R + EC+ NP P+I+W R + D + + +
Sbjct: 33 DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
G + D E A +Y A+N+ G + + + +A + +
Sbjct: 93 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA-----VVAQYYEADVNK 147
Query: 122 RQEDDGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLE 175
G + +C I AD V W + K+ + G L
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELH 202
Query: 176 IIDVTIEDA-GKYKVTAKNELG-ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233
I +V ED Y+ K+ L E+ + + P+ K V + K
Sbjct: 203 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSG 262
Query: 234 DLNDIVIECRLVGEPEPTISW 254
+ + + C G P P W
Sbjct: 263 S-STMALLCPAQGYPVPVFRW 282
Score = 149 bits (377), Expect = 3e-41
Identities = 44/244 (18%), Positives = 78/244 (31%), Gaps = 31/244 (12%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA 70
K ++ + + C P P W++ + V+ +
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---T 307
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL 130
L + D + D+G Y N +G + L + + P + D G+
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA------PLSAKIDPPTQTVDFGRPA 361
Query: 131 LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
+F C+ +P TV W G + + L I V ED G Y+
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESVKKEDKGMYQCF 407
Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
+N+ + A+ L P PV + + + + ++C G P P
Sbjct: 408 VRNDRESAEASAELKLGGRFDP-------PVIRQAFQEETMEPG-PSVFLKCVAGGNPTP 459
Query: 251 TISW 254
ISW
Sbjct: 460 EISW 463
Score = 147 bits (371), Expect = 2e-40
Identities = 47/249 (18%), Positives = 84/249 (33%), Gaps = 33/249 (13%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
S P + D G +F CQ NP + W + +
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV------------ 390
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L ++ V + D G+Y+ +N AS L P + + G
Sbjct: 391 ---LRIESVKKEDKGMYQCFVRNDRESAEASAELKL---GGRFDPPVIRQAFQEETMEPG 444
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGK 186
+ +C +P P + W G ++ + R++ + + L I V D G
Sbjct: 445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE-RPVTKQSDDDLNDIVIECRLV 245
YK AK+++G + + LN V G P + + + +++ C +
Sbjct: 505 YKCIAKSKVGVAEHSAKLN-------VYG---LPYIRQMEKKAIVAGE---TLIVTCPVA 551
Query: 246 GEPEPTISW 254
G P +I W
Sbjct: 552 GYPIDSIVW 560
Score = 140 bits (354), Expect = 4e-38
Identities = 46/260 (17%), Positives = 78/260 (30%), Gaps = 31/260 (11%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQL---LCNPKPDIVWFRGETQLSEDTRTV---MKTT 60
A + GN + +C + + + + W E +
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 61 PIGTNKYLVALELDDVIETDA-GLYKVKAKNKMGE---VAASINLNFSREQIDGLAP--T 114
P G L + +V D Y+ + K+++ ++A+ E I P
Sbjct: 197 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVV 250
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
L K ++ + C Q P P W + + S +L
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVS--GTL 308
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
I D +ED+GKY N +G + L + P T+ D
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDFG 358
Query: 235 LNDIVIECRLVGEPEPTISW 254
V C+ G P T+SW
Sbjct: 359 -RPAVFTCQYTGNPIKTVSW 377
Score = 133 bits (336), Expect = 1e-35
Identities = 57/250 (22%), Positives = 87/250 (34%), Gaps = 30/250 (12%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ ++ + + G LI C + P IVW R L + + K P GT
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRK--QKVFPNGT--- 580
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQED 125
L +++V +D Y AKN+ G A S+ + Q+ L
Sbjct: 581 ---LIIENVERNSDQATYTCVAKNQEGYSARGSLEV-----QVMVLPRIIPFAFEEGPAQ 632
Query: 126 DGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
G+ L C + P + W+ G + ED S S L I V A
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGS---VLTIEAVEASHA 689
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
G + A+N G T LN P + P K +D +EC+
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYV----------PPRWILEPTDKAFAQG-SDAKVECKA 738
Query: 245 VGEPEPTISW 254
G P+P ++W
Sbjct: 739 DGFPKPQVTW 748
Score = 115 bits (290), Expect = 1e-29
Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 12/197 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ G L C + P +I W +SED +
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV- 678
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L ++ V + AG + A+N G + LN P ++ +P+ + G
Sbjct: 679 ---LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV------PPRWILEPTDKAFAQG 729
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
EC+ P P V W + + + +L + ++ + G Y
Sbjct: 730 SDAKVECKADGFPKPQVTWKKAVGDTPGE-YKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788
Query: 188 KVTAKNELGESNATISL 204
A N +G + + +
Sbjct: 789 LCEAINGIGSGLSAVIM 805
Score = 100 bits (249), Expect = 4e-24
Identities = 40/189 (21%), Positives = 60/189 (31%), Gaps = 19/189 (10%)
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE-DDGKR 129
+ + + L+ A G + N D P FLK+P+ R + +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP----PDADQKGPVFLKEPTNRIDFSNSTG 56
Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYK 188
EC+ +P P +IW S D I DG F D E A Y
Sbjct: 57 AEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 116
Query: 189 VTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL---V 245
A+N+ G S D V + + N VI+C + V
Sbjct: 117 CLARNQFGSI--------ISRDVHVR-AVVAQYYEADVNKEHVIRG-NSAVIKCLIPSFV 166
Query: 246 GEPEPTISW 254
+ +SW
Sbjct: 167 ADFVEVVSW 175
Score = 66.1 bits (161), Expect = 1e-12
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + +P + +G+ EC+ PKP + W + + + + K+ I +
Sbjct: 714 PPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG 773
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
L +D++ +T+ G Y +A N +G +++ +
Sbjct: 774 --TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 142 bits (359), Expect = 7e-41
Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 38/274 (13%)
Query: 1 MGIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKT 59
MG A + + + G+ + C P VW + T L R ++
Sbjct: 1 MGRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP 60
Query: 60 TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL---------------NFS 104
L++ + D+G Y + + +
Sbjct: 61 Q---------RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 105 REQIDGLAPTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK 160
+D AP + + + ++ + F C +P P++ W +G + + + R
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171
Query: 161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP 220
+ SL + V D G Y +N+ G T +L+ P
Sbjct: 172 GIKLRHQQW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP-----I 223
Query: 221 VFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ P + + +D+ C++ + +P I W
Sbjct: 224 LQAGLPANQTAVLG-SDVEFHCKVYSDAQPHIQW 256
Score = 133 bits (336), Expect = 1e-37
Identities = 46/211 (21%), Positives = 84/211 (39%), Gaps = 18/211 (8%)
Query: 8 APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T+ ++ ++ N + F C NP P I W + + + R
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
+L ++ V+ +D G Y +NK G + + L+ E+ P+ +
Sbjct: 179 QW----SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV-LERSPHRPILQAGLPANQT 233
Query: 124 EDDGKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDGHSYF-----ASL 174
G + F C++ +D P + W +G +V D ++ K + L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ +VT EDAG+Y A N +G S+ + L
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 60.8 bits (147), Expect = 5e-11
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 8/107 (7%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGE----TQLSEDTRTVMKT 59
+ P + G+ + F C++ + +P I W + +++ D +
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277
Query: 60 TPIGTNKYLVA----LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L L +V DAG Y A N +G S L
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 143 bits (361), Expect = 1e-40
Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 25/249 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTV-MKTTPIGTNK 66
F + + G+ ++ +C+++ +P P I W + + L+ + P G
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
L++ + D+G+Y+ A+N + + FL++PS
Sbjct: 179 ----LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+GK + EC + P P+ W ++ + +S+ +L I +VT +D+G
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK-YSLLGGS-----NLLISNVTDDDSG 288
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y + +A+ L VP P F P + + DI EC +
Sbjct: 289 TYTCVVTYKNENISASAELTVL-----VP-----PWFLNHPSNLYAYES-MDIEFECAVS 337
Query: 246 GEPEPTISW 254
G+P PT++W
Sbjct: 338 GKPVPTVNW 346
Score = 129 bits (327), Expect = 1e-35
Identities = 50/202 (24%), Positives = 73/202 (36%), Gaps = 20/202 (9%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
F Q+P EG + EC + P P W RGE + ++
Sbjct: 217 GLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS-LLGGS 275
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
L + +V + D+G Y K ++AS L P FL PS
Sbjct: 276 N------LLISNVTDDDSGTYTCVVTYKNENISASAELTVLV------PPWFLNHPSNLY 323
Query: 124 EDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
+ + FEC + P PTV W +G V F I +L I+ V D
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDY--FQIVGGS-----NLRILGVVKSD 376
Query: 184 AGKYKVTAKNELGESNATISLN 205
G Y+ A+NE G + ++ L
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLI 398
Score = 127 bits (321), Expect = 9e-35
Identities = 49/256 (19%), Positives = 91/256 (35%), Gaps = 30/256 (11%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
+ F +P G ++ C + P I W + L+ + P G+
Sbjct: 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSL- 79
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAAS--INLNFSREQIDGLAPTFLKKPSIRQE 124
+ + + D GLY+ +A S + + FL +
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG------PLRFLSQTESITA 133
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DKRHKFSIDKDGHSYFASLEIIDVTIED 183
G +L +C + DP PT+ W + + + + G +L+I + D
Sbjct: 134 FMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG-----ALQISRLQPGD 188
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPV-----PGEGTKPVFTERPVTKQSDDDLNDI 238
+G Y+ +A+N ++A V PG + F +RP + + D
Sbjct: 189 SGVYRCSARNPASTR--------TGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEG-KDA 239
Query: 239 VIECRLVGEPEPTISW 254
V+EC + G P P+ +W
Sbjct: 240 VLECCVSGYPPPSFTW 255
Score = 88.0 bits (218), Expect = 3e-20
Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 24/173 (13%)
Query: 87 KAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVI 145
+ +++ + R + F+ +PS G +L C ++D P +
Sbjct: 2 RWGSELESSHHHHHHGGRR------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55
Query: 146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA--TIS 203
W G+ + + +G ++ D G Y+ A S T
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 204 LNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ F + +T D ++++C ++G+P PTI W
Sbjct: 116 VMV----------AGPLRFLSQTESITAFMGD---TVLLKCEVIGDPMPTIHW 155
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 136 bits (345), Expect = 5e-40
Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 26/216 (12%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+++ EG +L + + W + + R G
Sbjct: 2 SSIALSATDLKIQSTAEGIQL--YSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGV 54
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL------------- 111
+ L++++ D G Y ++ + +++L+
Sbjct: 55 TGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 112 --APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
A P + +GK L C + DP P V W + + + + +
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
I V+ D+GKY + KN+ G + +++
Sbjct: 175 ---YFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 93.4 bits (232), Expect = 2e-23
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 17/140 (12%)
Query: 127 GKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ + + V WSH+G ++ R K + + L+I + T D G
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW----LQINEPTPNDKG 72
Query: 186 KYKVTAKNELGESNATISLNFDSDD-----------APVPGEGTKPVFTERPVTKQSDDD 234
KY + + T+ L+ + D A + + V P +
Sbjct: 73 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132
Query: 235 LNDIVIECRLVGEPEPTISW 254
+ + C + G+P P +SW
Sbjct: 133 -KALNLTCNVWGDPPPEVSW 151
Score = 78.8 bits (194), Expect = 6e-18
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
++ A P + EG L C + +P P++ W + E L++ +K T
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
++ V D+G Y + KNK G + ++
Sbjct: 174 ----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 138 bits (350), Expect = 7e-40
Identities = 40/198 (20%), Positives = 81/198 (40%), Gaps = 9/198 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
AP F ++ + + C++ +PKP + W+R ++ ++ + ++ G ++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + V + DA +Y+V+A N+ G V+ + +L P L+
Sbjct: 64 ----LIIASVTDDDATVYQVRATNQGGSVSGTASLE-VEVPAKIHLPKTLEGMGAVHALR 118
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + + P P + W + + ++ + + S + V +DAG
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS---LVFPNGVERKDAGF 175
Query: 187 YKVTAKNELGESNATISL 204
Y V AKN G T+ L
Sbjct: 176 YVVCAKNRFGIDQKTVEL 193
Score = 101 bits (254), Expect = 7e-26
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVK-EDKRHKFSIDKDGH 168
+AP F ++ C++ P P V W G ++ + +++ K G+
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
L I VT +DA Y+V A N+ G + T SL + VP + P E
Sbjct: 62 H---QLIIASVTDDDATVYQVRATNQGGSVSGTASL-----EVEVPAKIHLPKTLEGMGA 113
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
+ + I+ G+P+P I+W
Sbjct: 114 VHALRG-EVVSIKIPFSGKPDPVITW 138
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 137 bits (347), Expect = 2e-39
Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 24/248 (9%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
T + G F C + P+ + ++ R V++
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGV 58
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + + DAG+Y+ +A + G+ A++ L + TF + S ++
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ------KLTFREVVSPQEFKQ 112
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ CR+ + PAP V W + +V ++F++ + +L+I+++ D G
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-----NLQILNINKSDEGI 167
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
Y+ + E + + P ++ ++ ++ CR G
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPA------ISMPQKSFNATAERG-EEMTFSCRASG 220
Query: 247 EPEPTISW 254
PEP ISW
Sbjct: 221 SPEPAISW 228
Score = 124 bits (313), Expect = 2e-34
Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+F + ++ +G C++ +P P + W +++ +
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 154
Query: 68 LVALELDDVIETDAGLYKVKAKNK-MGEVAASINLNFSREQIDGLAPTF--LKKPSIRQE 124
L++ ++ ++D G+Y+ + + + GE+ + I + P +K
Sbjct: 155 ---LQILNINKSDEGIYRCEGRVEARGEIDFRDIIV-----IVNVPPAISMPQKSFNATA 206
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ G+ + F CR P P + W +G ++E++++ L + ++ D
Sbjct: 207 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN------TELTVRNIINSDG 260
Query: 185 GKYKVTAKNELGESNATISLN 205
G Y A N+ GE L
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQ 281
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 134 bits (338), Expect = 3e-39
Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 17/198 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
T + G F C + P+ + ++ R V++ + +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR-- 59
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + + DAG+Y+ +A + G+ A++ L + TF + S ++
Sbjct: 60 ---LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ------KLTFREVVSPQEFKQ 110
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ CR+ + PAP V W + +V ++F++ + +L+I+++ D G
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-----NLQILNINKSDEGI 165
Query: 187 YKVTAKNELGESNATISL 204
Y+ + E +
Sbjct: 166 YRCEGRVEARGEIDFRDI 183
Score = 100 bits (251), Expect = 2e-26
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
S + G+ F C +P ++ G ++ +R + K+G
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQR--VVVQKEGVR-- 57
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
+ L I + IEDAG Y+ A + G+ AT+ L K F E ++
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ----------KLTFREVVSPQE 107
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
D + CR+ P P +SW
Sbjct: 108 FKQG-EDAEVVCRVSSSPAPAVSW 130
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 134 bits (339), Expect = 3e-39
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 7/193 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P FT+ P + G F CQ +P+P IVW + ++S V++ +
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFD----DGS 61
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQED 125
L + + D +Y+ A N +GE++ S L +QI PT P ++ +
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ C +P P + W + V + I + +L+I D G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNG-RIKQLRSESIGALQIEQSEESDQG 180
Query: 186 KYKVTAKNELGES 198
KY+ A N G
Sbjct: 181 KYECVATNSAGTR 193
Score = 106 bits (266), Expect = 2e-28
Identities = 35/144 (24%), Positives = 53/144 (36%), Gaps = 8/144 (5%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P F + P + G F C+ DP P ++W+ G +V + D S
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS-- 63
Query: 172 ASLEIIDV-TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
L I + T D Y+ A N +GE + + L +D G P P K
Sbjct: 64 -VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG---FPTIDMGPQLKV 119
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
+ + C G P+P I+W
Sbjct: 120 VERT-RTATMLCAASGNPDPEITW 142
Score = 65.2 bits (159), Expect = 5e-13
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P+ PQL+ + C NP P+I WF+ + +
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE-VAASINL 101
AL+++ E+D G Y+ A N G +A NL
Sbjct: 168 --ALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 137 bits (346), Expect = 2e-38
Identities = 43/257 (16%), Positives = 75/257 (29%), Gaps = 21/257 (8%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTT--PIG 63
+ + K + EG +C L PKP I W + + + G
Sbjct: 99 YLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGE---VAASINLNFSREQIDGL--APTFLKK 118
+ L + +D Y AKN + V + + G P
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV 218
Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
G + C ++P + +G V + + + L
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG--KRLLFKT 276
Query: 179 VTIEDAGKYKVTAKNELGESNA-TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
ED G Y N +G+ ++ L S P + ++P D
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----------APKYEQKPEKVIVVKQGQD 326
Query: 238 IVIECRLVGEPEPTISW 254
+ I C++ G P P + W
Sbjct: 327 VTIPCKVTGLPAPNVVW 343
Score = 120 bits (301), Expect = 5e-32
Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 24/258 (9%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGT 64
D P +P E N + EC + N + W + + G+
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQ 123
L +D G Y+ A+ G + I+ + K +
Sbjct: 64 ------LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY------LIASPAKTHEKT 111
Query: 124 EDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRH-----KFSIDKDGHSYFASLEII 177
+G+ +C + A P P + W + + + DG+ YF +
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171
Query: 178 DVTIEDAGKYKVTAKNELGESNATIS-LNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
DV D KY TAKN + + G +PV + +
Sbjct: 172 DV--SDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG-D 228
Query: 237 DIVIECRLVGEPEPTISW 254
+I C P ++
Sbjct: 229 VTMIYCMYGSNPMGYPNY 246
Score = 119 bits (300), Expect = 9e-32
Identities = 39/203 (19%), Positives = 69/203 (33%), Gaps = 20/203 (9%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P + G+ + C NP +F+ ++ + + +
Sbjct: 209 YKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKP-SIR 122
K L + D G+Y + N +G+ S+ L AP + +KP +
Sbjct: 269 GK---RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS------APKYEQKPEKVI 319
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
G+ + C++ PAP V+WSH+ + + + G L I V
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT---VTDSG------LVIKGVKNG 370
Query: 183 DAGKYKVTAKNELGESNATISLN 205
D G Y A NE G+ +
Sbjct: 371 DKGYYGCRATNEHGDKYFETLVQ 393
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 130 bits (328), Expect = 2e-37
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P +KPQ + G F C +P P IVW + ++S G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--- 62
Query: 68 LVALELDDV-IETDAGLYKVKAKNKMGE-VAASINLN-FSREQIDGLAPTFLKKPSIRQE 124
+ L ++ V D Y+ A+N +G+ V+A L + ++ P + P R
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ G +L C+ +P P + W + +V KDG L+I + ED
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY--SLKDG-----FLQIENSREEDQ 175
Query: 185 GKYKVTAKNELGESNAT 201
GKY+ A+N +G ++
Sbjct: 176 GKYECVAENSMGTEHSK 192
Score = 95.6 bits (238), Expect = 3e-24
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P ++KP + G F C + DP P+++W +G +V + +++ G
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI 65
Query: 172 ASLEIIDVTI-EDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPV 227
L I V D Y+ A+N +G++ +AT+++ PV T+ P
Sbjct: 66 --LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF-----PVITQGPG 118
Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
T+ + + +++ C+ +G P P I W
Sbjct: 119 TRVIEVG-HTVLMTCKAIGNPTPNIYW 144
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 134 bits (338), Expect = 2e-37
Identities = 46/255 (18%), Positives = 87/255 (34%), Gaps = 32/255 (12%)
Query: 7 FAPSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+ +F + + G ++ C + + W E +D R + + G
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV-SQETGN 158
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEV-----AASINLNFSREQIDGLAPTFLKKP 119
L + V ++D G Y N + + L + ++ P
Sbjct: 159 ------LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 120 SIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDV 179
+ G + EC +P PT++W + + K + + LEI +
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG-------ILEIPNF 265
Query: 180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
EDAG Y+ A+N G++ A L F + +P + + + +
Sbjct: 266 QQEDAGSYECVAENSRGKNVAKGQLTFYA----------QPNWVQIINDIHVAME-ESVF 314
Query: 240 IECRLVGEPEPTISW 254
EC+ G P+PT W
Sbjct: 315 WECKANGRPKPTYRW 329
Score = 118 bits (298), Expect = 1e-31
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ E Q P+ ++G + EC L NP P I+W R + + K+ I
Sbjct: 200 MGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
LE+ + + DAG Y+ A+N G+ A L F P +++ +
Sbjct: 260 --------LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA------QPNWVQIINDI 305
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+ + +EC+ P PT W +G + R + G +L I V +
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---QG-----TLNITIVNLS 357
Query: 183 DAGKYKVTAKNELGESNATISLN 205
DAG Y+ A+N+ G ++ L+
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELS 380
Score = 117 bits (295), Expect = 3e-31
Identities = 55/255 (21%), Positives = 85/255 (33%), Gaps = 28/255 (10%)
Query: 8 APSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P F Q+P + E ++ C++ NPKP I W T + G+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD-GS 63
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKKPSI 121
L+ + DAG Y+ A N G + SRE Q L + S
Sbjct: 64 ---LLINNPNK--TQDAGTYQCIATNSFGTIV-------SREAKLQFAYLENFKTRTRST 111
Query: 122 RQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
G+ ++ C + W + +D R F + G +L I V
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR-FVSQETG-----NLYIAKVE 165
Query: 181 IEDAGKYKVTAKNELGESNATIS-LNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
D G Y N + + V GE + + P T ++ +
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG-TTVK 224
Query: 240 IECRLVGEPEPTISW 254
+EC +G P PTI W
Sbjct: 225 LECFALGNPVPTILW 239
Score = 74.1 bits (182), Expect = 1e-15
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 24/152 (15%)
Query: 110 GLAPTFLKKPS---IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD 166
G P F+++PS + + K++ C ++ +P P + W +G V ++S+ D
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSV-VD 61
Query: 167 GHSYFASLEIIDVT-IEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFT 223
G SL I + +DAG Y+ A N G S L F F
Sbjct: 62 G-----SLLINNPNKTQDAGTYQCIATNSFGTIVSR-EAKLQF----------AYLENFK 105
Query: 224 ERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
R + S +V+ C E + +W
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAW 137
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 130 bits (327), Expect = 4e-37
Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 17/210 (8%)
Query: 8 APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T+ ++ ++ N + F C NP P I W + + + R
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
L ++ V+ +D G Y +NK G + + L+ E+ P+ +
Sbjct: 71 QWS----LVMESVVPSDRGNYTCVVENKFGSIRQTYTLD-VLERSPHRPILQAGLPANQT 125
Query: 124 EDDGKRLLFECRIQADPAPTVIWSH----SGVQVKEDKRHKFSIDKDGHSYFA----SLE 175
G + F C++ +D P + W +G +V D ++ K S L
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ +V+ D G+Y A N +G + L+
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLS 215
Score = 98.5 bits (245), Expect = 4e-25
Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
AP + + + ++ + F C +P P++ W +G + + + R +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
SL + V D G Y +N+ G T +L+ P + P
Sbjct: 71 QW---SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP-----ILQAGLPA 122
Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + +D+ C++ + +P I W
Sbjct: 123 NQTAVLG-SDVEFHCKVYSDAQPHIQW 148
Score = 64.2 bits (156), Expect = 2e-12
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-------RTV 56
+ P + G+ + F C++ + +P I W + TV
Sbjct: 110 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169
Query: 57 MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+K+ + + V L L +V E D G Y +A N +G + L+
Sbjct: 170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 132 bits (333), Expect = 1e-36
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 36/257 (14%)
Query: 7 FAPSFTQKPQLRQE-DEGNRLIFECQL-LCNPKPDIVWFR-GETQLSEDTRTVMKTTPIG 63
F F+ + + + EG ++F C P W + G
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG------LAPTFLK 117
L + +D G Y A + + + S+ FS+ + K
Sbjct: 159 N------LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
P+ G+ + EC +P P + W K D L I
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWR------KLDGSQTSKWLSSEPL----LHIQ 262
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
+V ED G Y+ A+N G + + +P + + ++D +D
Sbjct: 263 NVDFEDEGTYECEAENIKGRDTYQGRIIIHA----------QPDWLDVITDTEADIG-SD 311
Query: 238 IVIECRLVGEPEPTISW 254
+ C G+P P + W
Sbjct: 312 LRWSCVASGKPRPAVRW 328
Score = 116 bits (292), Expect = 9e-31
Identities = 41/204 (20%), Positives = 67/204 (32%), Gaps = 25/204 (12%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
+ + P G + EC NP P I W + + + +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-- 258
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSI 121
L + +V D G Y+ +A+N G + P +L +
Sbjct: 259 ---------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA------QPDWLDVITD 303
Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
+ D G L + C P P V W G + R + S G L + +
Sbjct: 304 TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---GG-----ELRFSKLVL 355
Query: 182 EDAGKYKVTAKNELGESNATISLN 205
ED+G Y+ A+N+ G A+ L
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELT 379
Score = 114 bits (286), Expect = 7e-30
Identities = 52/261 (19%), Positives = 87/261 (33%), Gaps = 35/261 (13%)
Query: 7 FAPSFTQKPQ---LRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL--SEDTRTVMKTTP 61
+ P F ++P + ++ C+ NP W T+L D+R +
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-- 60
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKK 118
G + + V DAG Y+ A N G V SRE + L ++
Sbjct: 61 -GDL-----VISNPVKAKDAGSYQCVATNARGTVV-------SREASLRFGFLQEFSAEE 107
Query: 119 PSIRQEDDGKRLLFECRI-QADPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYFASLE 175
+ +G ++F C PA + W + + D R +F G +L
Sbjct: 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGR-RFVSQTTG-----NLY 161
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNF--DSDDAPVPGEGTKPVFTERPVTKQSDD 233
I D G Y A + + ++ F S A + + + P +
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT 221
Query: 234 DLNDIVIECRLVGEPEPTISW 254
+ +EC G P P I W
Sbjct: 222 G-QMVTLECFAFGNPVPQIKW 241
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 126 bits (319), Expect = 5e-36
Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 25/223 (11%)
Query: 3 IAEDF---------APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQL 49
+AEDF AP +T ++ + N + F C NP P + W + +
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 50 SEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQID 109
++ R +L ++ V+ +D G Y +N+ G + + +L+ E+
Sbjct: 61 KQEHRIGGYKVRNQHW----SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSR 115
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIW----SHSGVQVKEDKRHKFSIDK 165
P+ G + F C++ +D P + W +G + D + K
Sbjct: 116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 175
Query: 166 DGH---SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
S L + +VT DAG+Y N +G++N + L
Sbjct: 176 HSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
Score = 98.8 bits (246), Expect = 3e-25
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
AP + + + + F C +P PT+ W +G + K++ R ++
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
H SL + V D G Y +NE G N T L+ P + P
Sbjct: 75 HW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRP-----ILQAGLPA 126
Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
+ D+ C++ + +P I W
Sbjct: 127 NASTVVG-GDVEFVCKVYSDAQPHIQW 152
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 125 bits (315), Expect = 7e-36
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 22/201 (10%)
Query: 4 AEDF--APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
AE AP T + F C + P+P+I W R + +
Sbjct: 1 AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTR-YSIRE 59
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPS 120
G L + V ++D G+Y A N +G V + L + P + P
Sbjct: 60 NGQL-----LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK------MKPKITRPPI 108
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ +G + + C +P P+V W ++E+ R + + G SL I +V
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIA--VLESG-----SLRIHNVQ 161
Query: 181 IEDAGKYKVTAKNELGESNAT 201
EDAG+Y+ AKN LG + +
Sbjct: 162 KEDAGQYRCVAKNSLGTAYSK 182
Score = 95.6 bits (238), Expect = 2e-24
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 21/146 (14%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP + F C +++ P P + W+ + + +K ++SI ++G
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENG---- 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
L I+ V D G Y TA N +G S + + KP T P+
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK------------MKPKITRPPIN 109
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
+ + V+ C +G P+P++SW
Sbjct: 110 VKIIEG-LKAVLPCTTMGNPKPSVSW 134
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 127 bits (320), Expect = 2e-35
Identities = 46/248 (18%), Positives = 84/248 (33%), Gaps = 22/248 (8%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + G F CQ+ + K DI WF + + + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + + DAG+YK + G + A++N+ + F P+ ++ +
Sbjct: 63 --TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKE 114
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + C + + PT+IW H G V K +F + + L+I + D G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGT 169
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
Y+ + + + P + + + C G
Sbjct: 170 YRCEGRILARGEINFKDIQVIVNVPPTV--QARQSIVNATANLGQ-----SVTLVCDADG 222
Query: 247 EPEPTISW 254
PEPT+SW
Sbjct: 223 FPEPTMSW 230
Score = 113 bits (283), Expect = 3e-30
Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 14/200 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
F P ++ EG + C ++ + P I+W +
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--- 156
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE--D 125
L++ + +TD G Y+ + + ++ + I + PT + SI +
Sbjct: 157 ---LQIRGIKKTDEGTYRCEGRILARGEINFKDI----QVIVNVPPTVQARQSIVNATAN 209
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G+ + C P PT+ W+ G ++ ++ S + L I +V D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS--SELTIRNVDKNDEA 267
Query: 186 KYKVTAKNELGESNATISLN 205
+Y A+N+ GE +A+I L
Sbjct: 268 EYVCIAENKAGEQDASIHLK 287
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 124 bits (312), Expect = 2e-35
Identities = 31/200 (15%), Positives = 75/200 (37%), Gaps = 18/200 (9%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+F + ++ +G C++ +P P + W +++ +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN--- 58
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF--LKKPSIRQED 125
L++ ++ ++D G+Y+ + + + ++ I + P +K +
Sbjct: 59 ---LQILNINKSDEGIYRCEGRVEARGEIDFRDI----IVIVNVPPAISMPQKSFNATAE 111
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G+ + F CR P P + W +G ++E+++ + + L + ++ D G
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNT----ELTVRNIINSDGG 165
Query: 186 KYKVTAKNELGESNATISLN 205
Y A N+ GE L
Sbjct: 166 PYVCRATNKAGEDEKQAFLQ 185
Score = 98.7 bits (246), Expect = 1e-25
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
TF + S ++ G+ CR+ + PAP V W + +V ++F++ +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---- 57
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
+L+I+++ D G Y+ + E + + P K +
Sbjct: 58 -NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-- 114
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
++ CR G PEP ISW
Sbjct: 115 -----EMTFSCRASGSPEPAISW 132
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 128 bits (323), Expect = 5e-35
Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 35/258 (13%)
Query: 7 FAPSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+P + ++ EG L +C P P I W + + V G
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRV-SQGHNGD 172
Query: 65 NKYLVALELDDVIETDA-GLYKVKAKNKMGEVA---ASINLNFSREQIDGLAPTFLKKPS 120
L +V+ D Y A+ L + P
Sbjct: 173 ------LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ 226
Query: 121 IRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEI 176
G LL EC P P + W G + DK ++ +L I
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF-------ENFNKALRI 279
Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLN 236
+V+ ED+G+Y A N++G TIS+ + P + + P
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----------APYWLDEPKNLILAPG-E 328
Query: 237 DIVIECRLVGEPEPTISW 254
D + CR G P+PT+ W
Sbjct: 329 DGRLVCRANGNPKPTVQW 346
Score = 121 bits (305), Expect = 2e-32
Identities = 46/203 (22%), Positives = 70/203 (34%), Gaps = 22/203 (10%)
Query: 6 DFAPSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ PSF G L+ EC P PDI W++ L D
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA 276
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
L + +V E D+G Y A NKMG + +I++ AP +L +P
Sbjct: 277 --------LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK------AAPYWLDEPKNL 322
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
G+ CR +P PTV W +G ++ + ++ D I
Sbjct: 323 ILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-----TIIFRDTQIS 377
Query: 183 DAGKYKVTAKNELGESNATISLN 205
Y+ NE G A ++
Sbjct: 378 SRAVYQCNTSNEHGYLLANAFVS 400
Score = 109 bits (275), Expect = 3e-28
Identities = 48/255 (18%), Positives = 83/255 (32%), Gaps = 22/255 (8%)
Query: 8 APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
P+ T++ D + ++ EC+ NP P W R + +
Sbjct: 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTL 75
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQE- 124
+ E G Y+ A+NK G I L S+ +P + K+
Sbjct: 76 VIDFRS-GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK------SPLWPKENLDPVVV 128
Query: 125 DDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
+G L +C P+P + W S ++ + S +G L +V ++D
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR-VSQGHNG-----DLYFSNVMLQD 182
Query: 184 A-GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL---NDIV 239
Y A+ + F G + P S + D++
Sbjct: 183 MQTDYSCNARFHFTHTIQQ-KNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLL 241
Query: 240 IECRLVGEPEPTISW 254
+EC G P P I+W
Sbjct: 242 LECIASGVPTPDIAW 256
Score = 38.7 bits (90), Expect = 0.001
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 218 TKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P T++ D ++I+IEC G P P+ W
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHW 51
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 122 bits (308), Expect = 1e-34
Identities = 36/211 (17%), Positives = 80/211 (37%), Gaps = 25/211 (11%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQ-LLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
FT+ + E ++ F Q + + + E ++ E + M N
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---NTG 59
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS-------------REQIDGLAPT 114
++ + ++ + + D G Y + ++ +++ L +E I P
Sbjct: 60 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH 119
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
F++ S +L +C++ T I W ++ D++H F +
Sbjct: 120 FVEYLSWEV-TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK------DGICT 172
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISL 204
L I + + +DAG Y+V K++ G+ + + L
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 94.2 bits (234), Expect = 7e-24
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 15/153 (9%)
Query: 113 PTFLKKPSIRQEDDGKRLLFE-CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
F K + + ++ F + V + + ++ E ++K ID++
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII- 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDA---------PVPGEGTKPVF 222
+ + + ED G Y ++ +++T+ L D P F
Sbjct: 62 -EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 223 TERPVTKQSDDDLNDIVIECRLVGE-PEPTISW 254
E + + + +++++C++ E I W
Sbjct: 121 VEYLSWEVTGEC--NVLLKCKVANIKKETHIVW 151
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 127 bits (321), Expect = 4e-34
Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 25/251 (9%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNK 66
P + EG C + W R +Q + +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-FSREQIDGLAPTFLKKPSIRQED 125
L + D+G++ A N G + L + I F + +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI----NIFPMINTTVFVN 326
Query: 126 DGKRLLFECRIQADPAPTVI-WSHSGVQVKED-KRHKFSIDKDGHSYFASLEIIDVTIED 183
DG+ + +A P P W + + + + S ++ Y + L + + +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386
Query: 184 AGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR 243
G Y N + ++ + TKP L + +++C
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVN----------TKPEILTYD-------RLVNGMLQCV 429
Query: 244 LVGEPEPTISW 254
G PEPTI W
Sbjct: 430 AAGFPEPTIDW 440
Score = 112 bits (281), Expect = 1e-28
Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 21/208 (10%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTN 65
F F ++G + + PKP+ W ++ K+
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+Y+ L L + T+ G Y N A + N+ KP I D
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNV------------YVNTKPEILTYD 419
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID--------KDGHSYFASLEII 177
+ +C P PT+ W + +D I
Sbjct: 420 RLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSID 479
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
+ G + A N++G+++A +
Sbjct: 480 SSAFKHNGTVECKAYNDVGKTSAYFNFA 507
Score = 75.9 bits (186), Expect = 6e-16
Identities = 27/249 (10%), Positives = 50/249 (20%), Gaps = 40/249 (16%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
PS G+ + C + W +
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCT----DPGFVKWTF-------EILDETNENKQNE--- 81
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+ T+ G Y K+ + SI + +
Sbjct: 82 ---WITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD------PAKLFLVDRSLYGKED 129
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI-EDAGK 186
L C + DP T K +F D + I V
Sbjct: 130 NDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG-----IMIKSVKRAYHRLC 183
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
+ E +S F P ++ + ++ + C +
Sbjct: 184 LHCSVDQEGKSV---LSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF---TVTCTIKD 237
Query: 247 EPEPT-ISW 254
+W
Sbjct: 238 VSSSVYSTW 246
Score = 62.4 bits (151), Expect = 2e-11
Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 41/179 (22%)
Query: 80 DAGLY----KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
A + + + + G S++ P+ S G + C
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS------PPSIHPGKSDLIVRVGDEIRLLCT 59
Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
V W+ + + + + GKY T K+ L
Sbjct: 60 DP----GFVKWTFEILDETNENKQN------------EWITEKAEATNTGKYTCTNKHGL 103
Query: 196 GESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
S I + D K +R + + D+ D ++ C + +PE T
Sbjct: 104 SNS---IYVFV--RDPA------KLFLVDRSLYGKEDN---DTLVRCP-LTDPEVTNYS 147
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 120 bits (303), Expect = 4e-34
Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 15/198 (7%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + G F CQ+ + K DI WF + + + +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L + + DAG+YK + G + A++N+ + F P+ ++ +
Sbjct: 63 --TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ------KLMFKNAPTPQEFKE 114
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G+ + C + + PT+IW H G V K +F + + L+I + D G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGT 169
Query: 187 YKVTAKNELGESNATISL 204
Y+ + +
Sbjct: 170 YRCEGRILARGEINFKDI 187
Score = 87.2 bits (216), Expect = 3e-21
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 14/144 (9%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADP-APTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
PS + G+ F C++ D + W + + + S+ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD-S 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE-SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
++L I + I+DAG YK E G S AT+++ K +F P ++
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ----------KLMFKNAPTPQE 111
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
+ D VI C +V PTI W
Sbjct: 112 FKEG-EDAVIVCDVVSSLPPTIIW 134
Score = 59.5 bits (144), Expect = 4e-11
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
F P ++ EG + C ++ + P I+W +
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--- 156
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
L++ + +TD G Y+ + + ++
Sbjct: 157 ---LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 125 bits (315), Expect = 6e-34
Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 12/207 (5%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRG--ETQLSEDTRTVMKTTPIGTNK 66
P Q + E ++ C P P+I W R +E +++ +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
+L + DV +D+G Y +A +++G S+ L+ AP F+ +I +
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY------APKFISNQTIYYSWE 114
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G + C ++++P ++ W + + G LEI + D G+
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK--MILEIAPTSDNDFGR 172
Query: 187 YKVTAKNELGESNATISLN-FDSDDAP 212
Y TA N +G L D +P
Sbjct: 173 YNCTATNHIGTRFQEYILALADVPSSP 199
Score = 83.3 bits (206), Expect = 1e-18
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 27/149 (18%)
Query: 118 KPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQV-------KEDKRHKFSIDK 165
+P I Q + ++ C + +P P + W + D R +
Sbjct: 1 QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTER 225
S L I DV + D+G+Y A + +G ++ L+ + P F
Sbjct: 61 GSSS----LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY----------APKFISN 106
Query: 226 PVTKQSDDDLNDIVIECRLVGEPEPTISW 254
S + N I I C + P +I W
Sbjct: 107 QTIYYSWEG-NPINISCDVKSNPPASIHW 134
Score = 75.6 bits (186), Expect = 5e-16
Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 36/221 (16%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
+AP F + EGN + C + NP I W R + L T +KT G
Sbjct: 99 YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK- 157
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGL--APTFLKKPSIRQ- 123
+ LE+ + D G Y A N +G L + + +P +K + Q
Sbjct: 158 --MILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL-----ALADVPSSPYGVKIIELSQT 210
Query: 124 ---------EDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASL 174
+ G + ++ + IW + +
Sbjct: 211 TAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ----------------TMV 254
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
+ ++ + +V A N G+ + + F + P
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 119 bits (301), Expect = 9e-34
Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 19/203 (9%)
Query: 8 APSFT--QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
P+ + QK + G + F C+ +P+P I WFR + E+ + T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK--YILKGSNTE 59
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
L + ++I +D G Y +A NK GE L + P ++ + +
Sbjct: 60 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF------VQPHIIQLKNETTYE 108
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFS---IDKDGHSYFASLEIIDVTIE 182
++ C + +P P + W + + K I+ G +SL I DV +
Sbjct: 109 -NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 183 DAGKYKVTAKNELGESNATISLN 205
D+G+Y A + +G ++ L+
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYLD 190
Score = 98.0 bits (244), Expect = 2e-25
Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 18/143 (12%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
A + +K + G+ + F CR P P + W +G ++E++++ +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI--LKGSNT--- 58
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L + ++ D G Y A N+ GE L +P +
Sbjct: 59 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV----------FVQPHIIQLKNETTY 107
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
++ + + C GEP P I+W
Sbjct: 108 ENG--QVTLVCDAEGEPIPEITW 128
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 127 bits (320), Expect = 1e-33
Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 28/259 (10%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV--WFRGETQLSEDT---RTVMK 58
+ G +L+ C I W ++ R +
Sbjct: 220 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKK 118
+ K+L L +D V +D GLY A + + S +
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE---KPFVAFGSGM 336
Query: 119 PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
S+ + G+R+ + P P + W +G+ ++ + K GH L I++
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHV----LTIME 387
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL--N 236
V+ D G Y V N + + + ++ P E+ + D
Sbjct: 388 VSERDTGNYTVILTNPISKEKQSHVVSLV--------VYVPPQIGEKSLISPVDSYQYGT 439
Query: 237 DIVIECRLVGEPEP-TISW 254
+ C + P P I W
Sbjct: 440 TQTLTCTVYAIPPPHHIHW 458
Score = 125 bits (314), Expect = 7e-33
Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 24/213 (11%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVM---------- 57
P T +P + Q E + C + ++ W++ Q +
Sbjct: 550 GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608
Query: 58 -----KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLA 112
T + ++ +EL + D G Y A+++ + + + + +A
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL--ERVA 666
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
PT + G+ + C +P P ++W + ED
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN------R 720
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L I V ED G Y A + LG +
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
Score = 121 bits (303), Expect = 2e-31
Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 62/294 (21%)
Query: 9 PSFTQKPQLRQED---EGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKT----- 59
P +K + D G C + P P I W+ + + + +
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 60 -----------------------TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA 96
+ K L + LYK +A NK+G
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 97 ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED 156
I+ + +R P +P + Q + + + C + W G Q
Sbjct: 541 RVISFHVTR------GPEITLQPDM-QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPI 593
Query: 157 KRHKF----------------SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200
+ ++ + + +E+ + +++D G Y A++ +
Sbjct: 594 HVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653
Query: 201 TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + P T Q+ I + C G P P I W
Sbjct: 654 CVVRQLTVLERV------APTITGNL-ENQTTSIGESIEVSCTASGNPPPQIMW 700
Score = 117 bits (295), Expect = 3e-30
Identities = 31/247 (12%), Positives = 61/247 (24%), Gaps = 19/247 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + + + L C+ + D+ W Q + R + G
Sbjct: 31 LPRLSIQKDILTIKANTTLQITCR----GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + VI D G YK + + + + + E+
Sbjct: 87 T--LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ-DYRSPFIASVSDQHGVVYITENKN 143
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
K ++ C + + + ++ S D I I AG
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-----FTIPSYMISYAGMV 198
Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE 247
AK + + + + + + L V+ C E
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPS----HGIELSVGEKL---VLNCTARTE 251
Query: 248 PEPTISW 254
I +
Sbjct: 252 LNVGIDF 258
Score = 117 bits (295), Expect = 3e-30
Identities = 30/252 (11%), Positives = 73/252 (28%), Gaps = 22/252 (8%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
S E++ ++ C + + R + +
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG---- 184
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
+ + + AG+ +AK + + + + L + G+
Sbjct: 185 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVV--VVGYRIYDVVLSPSHGIELSVGE 240
Query: 129 RLLFECRIQADPAPTVIWS--HSGVQVKEDK----RHKFSIDKDGHSYFASLEIIDVTIE 182
+L+ C + + + ++ + + + K K + + ++L I VT
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300
Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
D G Y A + L + + V + + ++ + I
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVR-------VHEKPFVAFGSGMESLVEATVG-ERVRIPA 352
Query: 243 RLVGEPEPTISW 254
+ +G P P I W
Sbjct: 353 KYLGYPPPEIKW 364
Score = 97.1 bits (241), Expect = 4e-23
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 20/175 (11%)
Query: 80 DAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD 139
L+ S++L+ P + I L CR Q
Sbjct: 8 AVALWLCVETRAASVGLPSVSLD---------LPRLSIQKDILTIKANTTLQITCRGQ-- 56
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
+ W Q ++R + + DG + +L I V D G YK + S
Sbjct: 57 --RDLDWLWPNNQSGSEQRVEVTECSDGL-FCKTLTIPKVIGNDTGAYKCFYRETDLASV 113
Query: 200 ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + D + V + V +++ +VI C
Sbjct: 114 IYVYVQ-DYRSPFIA-----SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162
Score = 71.7 bits (175), Expect = 2e-14
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ E AP+ T + + G + C NP P I+WF+ L ED+ V+K
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--- 717
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
G L + V + D GLY +A + +G
Sbjct: 718 GNRN----LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 123 bits (309), Expect = 3e-33
Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 30/259 (11%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQL---LCNPKPDIVWFRGETQL---SEDTRTVMKTT 60
A + GN + +C + + + + W E + +
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 61 PIGTNKYLVALELDDVIETDA-GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
P G L + +V D Y+ + K+++ + ++ + + P
Sbjct: 162 PSGE------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215
Query: 120 SIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
++ Q+ + C Q PAP+ W + + S +L
Sbjct: 216 ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS--GTLI 273
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
I D +ED+GKY N +G + L + P T+ D
Sbjct: 274 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA----------PLSAKIDPPTQTVDFG- 322
Query: 236 NDIVIECRLVGEPEPTISW 254
V C+ G P T+SW
Sbjct: 323 RPAVFTCQYTGNPIKTVSW 341
Score = 112 bits (282), Expect = 2e-29
Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 25/198 (12%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P+ QKP + + + C P P W++ + V+ +
Sbjct: 214 TPALVQKPL--ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG- 270
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + D + D+G Y N +G + L + + P + D G
Sbjct: 271 --TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT------APLSAKIDPPTQTVDFG 322
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ +F C+ +P TV W G + + L I V ED G Y
Sbjct: 323 RPAVFTCQYTGNPIKTVSWMKDGKAIGHSES--------------VLRIESVKKEDKGMY 368
Query: 188 KVTAKNELGESNATISLN 205
+ +N+ + A+ L
Sbjct: 369 QCFVRNDRESAEASAELK 386
Score = 106 bits (267), Expect = 3e-27
Identities = 49/259 (18%), Positives = 85/259 (32%), Gaps = 27/259 (10%)
Query: 8 APSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
P F ++P R + EC+ NP P+I+W R + D + + + G
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ D E A +Y A+N+ G + +++ A + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV------AQYYEADVNKEHVI 116
Query: 126 DGKRLLFECRI---QADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLEIIDV 179
G + +C I AD V W + K+ + G L I +V
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELHIREV 171
Query: 180 TIEDA-GKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
ED Y+ K+ L +AT ++ P ++P+
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP-RTPALVQKPLELMVAH-- 228
Query: 236 NDIVIECRLVGEPEPTISW 254
I + C G P P+ W
Sbjct: 229 -TISLLCPAQGFPAPSFRW 246
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 123 bits (309), Expect = 2e-32
Identities = 37/254 (14%), Positives = 67/254 (26%), Gaps = 42/254 (16%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
D + G L C+ + N + W L E M T
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 65 NKYLVA-LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
+ + V D G Y + + S + + F+ + +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTI-------VEKGFINATNSSE 334
Query: 124 E---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ D + F R +A P W+ S +++ S+
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--------LDNGYSISKFCNH 386
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
G+Y A+N+ + +LN + KP +
Sbjct: 387 KHQPGEYIFHAENDDAQFTKMFTLN-------IR---RKPQVLAEA---------SASQA 427
Query: 241 ECRLVGEPEPTISW 254
C G P P+ +W
Sbjct: 428 SCFSDGYPLPSWTW 441
Score = 104 bits (260), Expect = 8e-26
Identities = 38/251 (15%), Positives = 79/251 (31%), Gaps = 40/251 (15%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ + + D + + + +W + L+ + N+
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+V++ + + ET AG Y + +++ + I L++P R+ ++
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTV-----SIRNTLLYTLRRPYFRKMEN- 155
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ C ++ P P V W Q + K ++ E +
Sbjct: 156 -QDALVCISESVPEPIVEWVLCDSQGESCKEESPAV--------VKKEEKVLHELFGTDI 206
Query: 188 KVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
+ A+NELG TI LN P T + + + L I C+
Sbjct: 207 RCCARNELGRECTRLFTIDLN------------QTPQTTLPQLFLKVGEPL---WIRCKA 251
Query: 245 VG-EPEPTISW 254
V ++W
Sbjct: 252 VHVNHGFGLTW 262
Score = 99.8 bits (248), Expect = 3e-24
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 30/203 (14%)
Query: 10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV 69
+ T + + D+ F + P+ W + + +
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY--------- 378
Query: 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
++ + G Y A+N + L +KP + E
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTL------------NIRRKPQVLAE--ASA 424
Query: 130 LLFECRIQADPAPTVIWSHSG-------VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
C P P+ W ++ E ++ + K + +S +
Sbjct: 425 SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI 484
Query: 183 DAGKYKVTAKNELGESNATISLN 205
K A N LG S TI LN
Sbjct: 485 KGFLVKCCAYNSLGTSCETILLN 507
Score = 89.0 bits (220), Expect = 2e-20
Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 27/190 (14%)
Query: 75 DVIETDAGLYK----VKAKNKMGEVAASINLNFSRE------QIDGLAPTFLKKPSIRQE 124
+ D + K N +S S + + + + + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
D + + + A + +W + + S+ I+ +T A
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-----NRGVVSMVILKMTETQA 115
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
G+Y + ++E +++ ++T R + ++ + C
Sbjct: 116 GEYLLFIQSEATNYTILFTVS----------IRNTLLYTLRRPYFRKMEN--QDALVCIS 163
Query: 245 VGEPEPTISW 254
PEP + W
Sbjct: 164 ESVPEPIVEW 173
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 114 bits (288), Expect = 1e-31
Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 31/229 (13%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
EDF P + P +G C+ P P I W++G ++ D +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 65 NKYLVALEL--DDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSI 121
+ L L + D G+Y A+N +GE V+ +L ++ L F + PS
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL-----EVAILRDDFRQNPSD 120
Query: 122 RQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
G+ + EC+ + P PT+ W G + + + G L I
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDER--ITIRGG-----KLMITYTR 173
Query: 181 IEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFTERP 226
DAGKY N +GE A +++ +P F +
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTVL------------ERPSFVKAA 210
Score = 87.2 bits (216), Expect = 4e-21
Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 107 QIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSI 163
+ + P ++ PS G+ C+ + P PT+ W G +V+ DK R +
Sbjct: 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFT 223
G +F + + D G Y A+N LGE+ S DA + + F
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV--------SHDASLEVAILRDDFR 115
Query: 224 ERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
+ P V+EC+ G PEPTISW
Sbjct: 116 QNPSDVMVAVG-EPAVMECQPPRGHPEPTISW 146
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 113 bits (284), Expect = 3e-31
Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 25/204 (12%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDTRTVMKTTPIGTN 65
P ++ D + +C L + + W + +L+ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME----- 57
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
++ D+G Y + + A+ + AP ++
Sbjct: 58 -----YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA------APDITGHKRSENKN 105
Query: 126 DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH---KFSIDKDGHSYFASLEIIDVTI- 181
+G+ + C+ P P +W V E+ + +F I + L I+++ I
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT--ELNIVNLQIT 163
Query: 182 EDAGKYKVTAKNELGESNATISLN 205
ED G+Y+ A N +G ++ + L
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLR 187
Score = 84.9 bits (210), Expect = 2e-20
Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 23/145 (15%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKDGHS 169
P + + D + +C + + W+ +GV++ +++ +
Sbjct: 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN------- 55
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTK 229
I ED+G+Y + + A ++ + P T ++
Sbjct: 56 --MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA----------APDITGHKRSE 102
Query: 230 QSDDDLNDIVIECRLVGEPEPTISW 254
++ D ++ C+ VG P P W
Sbjct: 103 NKNEG-QDAMMYCKSVGYPHPEWMW 126
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 113 bits (285), Expect = 4e-31
Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 37/204 (18%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
T P+ + G + C+ +P WF+ ++ +
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE----------- 66
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEV----------AASINLNFSREQIDGLAPTFLK 117
L + V DAG Y + N + S + +
Sbjct: 67 ---LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
+P+ ++ G L+ +C P P W + + + + + +
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK-------------LYMVP 170
Query: 178 DVTIEDAGKYKVTAKNELGESNAT 201
V +E G Y N+ ++
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSK 194
Score = 87.6 bits (217), Expect = 3e-21
Identities = 23/149 (15%), Positives = 43/149 (28%), Gaps = 20/149 (13%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P + G+ + CR P W ++
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------ 65
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEG---TKPVFTER 225
L V ++DAG Y N + + + + +G +K
Sbjct: 66 -ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE 124
Query: 226 PVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P +++ + +V++C VG P P W
Sbjct: 125 PTSQKLMPG-STLVLQCVAVGSPIPHYQW 152
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 114 bits (286), Expect = 3e-30
Identities = 43/264 (16%), Positives = 77/264 (29%), Gaps = 27/264 (10%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLC-------NPKPDIVWFRGETQLSEDTRTV 56
A + + EG + C + +P+ ++ W + ++ +
Sbjct: 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73
Query: 57 MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
+ AL L ++ D+G Y +N SI L F+
Sbjct: 74 TRMWAQDG-----ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF--LPFI 126
Query: 117 KKPSIRQEDDGKRL---LFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS 173
P I L + + W + + +D S+
Sbjct: 127 SYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT-----H 181
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDD 233
L + DV +EDAG Y+ I+ + E T PV T +
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI-ELRIKKKKEETIPVIISPLKTISASL 240
Query: 234 DLNDIVIECR---LVGEPEPTISW 254
+ + I C+ G P T+ W
Sbjct: 241 G-SRLTIPCKVFLGTGTPLTTMLW 263
Score = 104 bits (261), Expect = 1e-26
Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 27/220 (12%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLI---FECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
D F PQ+ L+ I W++ L +D +
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS---REQIDGLAPTFLKK 118
L + DV DAG Y+ +I + +++ + P +
Sbjct: 179 TTH------LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISP 232
Query: 119 PSIRQEDDGKRLLFECRIQA---DPAPTVIW----------SHSGVQVKEDKRHKFSIDK 165
G RL C++ P T++W ++ G +V E R ++S +
Sbjct: 233 LKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENN 292
Query: 166 DGHSYFASLEIIDVTIEDAG-KYKVTAKNELGESNATISL 204
+ + L VT ED +K N L ++
Sbjct: 293 ENY-IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 111 bits (278), Expect = 4e-30
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 19/206 (9%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
+ +P + P + C++ P+P I WF+ +S + + +
Sbjct: 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIR 122
+ E D G Y AKN++G+ V+ +L QI L F +P
Sbjct: 65 GA-LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL-----QIAVLRDDFRVEPKDT 118
Query: 123 QEDDGKRLLFEC-RIQADPAPTVIWSHSGVQVKEDKRH------KFSIDKDGHSYFASLE 175
+ G+ L EC + P PT+IW GV + + K + I G +L
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG-----NLL 173
Query: 176 IIDVTIEDAGKYKVTAKNELGESNAT 201
I +V D G YK A+N +G ++
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 91.1 bits (226), Expect = 2e-22
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 16/147 (10%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
+P ++ P+ + C+++ P PT+ W G V +++ + + F
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERPVT 228
+ +D G+Y AKN +G++ +A++ + + F P
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-----------LRDDFRVEPKD 117
Query: 229 KQSDDDLNDIVIECRLV-GEPEPTISW 254
+ ++EC G PEPT+ W
Sbjct: 118 TRVAKG-ETALLECGPPKGIPEPTLIW 143
Score = 44.9 bits (106), Expect = 6e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
AP+ G+ P E P + + C++ G+PEPTI W
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKN-EPATLNCKVEGKPEPTIEW 43
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 109 bits (274), Expect = 1e-29
Identities = 27/205 (13%), Positives = 56/205 (27%), Gaps = 11/205 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ + + E N + C P + W + + K T ++
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 68 LVA---LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
+ V D G Y + G + + + P+
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL----VPPSKPTVNIPSSA 119
Query: 125 DDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA---SLEIIDVT 180
G R + C Q P W G+ + + + + + L ++
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
D G+Y A+N G + ++
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 77.7 bits (191), Expect = 1e-17
Identities = 24/148 (16%), Positives = 37/148 (25%), Gaps = 14/148 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
+ T + + + C +P V W + I
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 172 ----ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
+ VT ED G Y E G S + + VP P +
Sbjct: 64 TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVP-----PSKPTVNI 115
Query: 228 TKQSDDDLNDIVIECRLV-GEPEPTISW 254
+ N V+ C G P +W
Sbjct: 116 PSSATIG-NRAVLTCSEQDGSPPSEYTW 142
Score = 65.8 bits (160), Expect = 3e-13
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 3/99 (3%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
PS GNR + C +P + WF+ + + ++ +
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 66 KYLV--ALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L D + +D G Y +A+N G S +
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 112 bits (280), Expect = 6e-29
Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 34/248 (13%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ + + D + + + +W + L+ ++ + +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS--- 104
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+ + + ET AG Y + +++ ++ I L++P R+ ++
Sbjct: 105 ---MVILKMTETQAGEYLLFIQSEATNYTILFTVS-----IRNTLLYTLRRPYFRKMEN- 155
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ C ++ P P V W Q + K ++ K + ++ D
Sbjct: 156 -QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKE-----EKVLHELFGTD---I 206
Query: 188 KVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-G 246
+ A+NELG + D P T + + + L I C+ V
Sbjct: 207 RCCARNELGRECTRLFTI----DLNQT-----PQTTLPQLFLKVGEPL---WIRCKAVHV 254
Query: 247 EPEPTISW 254
++W
Sbjct: 255 NHGFGLTW 262
Score = 110 bits (275), Expect = 3e-28
Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 23/205 (11%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
D + G L C+ + N + W L E M T
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 65 NKYLVA-LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF---LKKPS 120
+ + V D G Y + + A + + F
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA----------LVTIVEKGFINATNSSE 334
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ D + F R +A P W+ S +++ +G+S +
Sbjct: 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYS----ISKFCNH 386
Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
G+Y A+N+ + +LN
Sbjct: 387 KHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 106 bits (265), Expect = 9e-27
Identities = 32/251 (12%), Positives = 66/251 (26%), Gaps = 34/251 (13%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+T + ++ E C P+P + W ++Q
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE--- 195
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L ++ TD + A+N++G + L T G
Sbjct: 196 ---KVLHELFGTD---IRCCARNELGRECTRLFTID-------LNQTPQTTLPQLFLKVG 242
Query: 128 KRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--ASLEIIDVTIEDA 184
+ L C+ + + + W ++E + S + + V D
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV-TKQSDDDLNDIVIECR 243
G Y ++ +S A +++ K D + R
Sbjct: 303 GYYTCSSSKHPSQS-ALVTIV------------EKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 244 LVGEPEPTISW 254
P+ +W
Sbjct: 350 FKAYPQIRCTW 360
Score = 87.4 bits (216), Expect = 4e-20
Identities = 21/190 (11%), Positives = 57/190 (30%), Gaps = 27/190 (14%)
Query: 75 DVIETDAGLYK-VKAKNKMGEVAASI---------NLNFSREQIDGLAPTFLKKPSIRQE 124
+ D + K V +K + + + + + + + + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
D + + + A + +W + S+ I+ +T A
Sbjct: 61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-----SMVILKMTETQA 115
Query: 185 GKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRL 244
G+Y + ++E +++ + ++T R + ++ + C
Sbjct: 116 GEYLLFIQSEATNYTILFTVSIRN----------TLLYTLRRPYFRKMEN--QDALVCIS 163
Query: 245 VGEPEPTISW 254
PEP + W
Sbjct: 164 ESVPEPIVEW 173
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 112 bits (281), Expect = 2e-28
Identities = 44/248 (17%), Positives = 77/248 (31%), Gaps = 38/248 (15%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKY 67
T P G L C NP W G Q
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-------------- 427
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + ++ E ++GLY +A N + + L + + + +D
Sbjct: 428 ---LFISNITEKNSGLYTCQANNSASGHSRTTVKTI--TVSAELPKPSISSNNSKPVEDK 482
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ F C +A T +W +G + R + S +L + +VT DA Y
Sbjct: 483 DAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGN------RTLTLFNVTRNDARAY 535
Query: 188 KVTAKNELGESNA-TISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
+N + + + ++L+ V P+ + + S +L + C
Sbjct: 536 VCGIQNSVSANRSDPVTLD-------VLYGPDTPIISPPDSSYLSGANL---NLSCHSAS 585
Query: 247 EPEPTISW 254
P P SW
Sbjct: 586 NPSPQYSW 593
Score = 107 bits (268), Expect = 1e-26
Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 34/257 (13%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRT-------VMKTTPIG 63
T + EG ++ L W++GE P
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAY 61
Query: 64 TNKYLVA----LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
+ + ++ L + ++I+ D G Y + V F P
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDL-VNEEATGQFRVYP---ELPKPSISS 117
Query: 120 SIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
+ + +D + F C + T +W + + R + S +L + +
Sbjct: 118 NNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN------RTLTLFN 170
Query: 179 VTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLND 237
VT D YK +N + ++ LN V P + + +S ++L
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILN-------VLYGPDAPTISPLNTSYRSGENL-- 221
Query: 238 IVIECRLVGEPEPTISW 254
+ C P SW
Sbjct: 222 -NLSCHAASNPPAQYSW 237
Score = 105 bits (262), Expect = 6e-26
Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 36/253 (14%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ + F ++ + + C+ +W+ L R ++ +
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPR--LQLSND 340
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSI 121
L L V D G Y+ +N++ + + LN + PS
Sbjct: 341 NRT-----LTLLSVTRNDVGPYECGIQNELSVDHSDPVILN-----VLYGPDDPTISPSY 390
Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
G L C ++P W G + L I ++T
Sbjct: 391 TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------QELFISNITE 435
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
+++G Y A N + T + P + + +D + +
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKT-------ITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 242 CRLVGEPEPTISW 254
C + + W
Sbjct: 489 CEPEAQNTTYLWW 501
Score = 100 bits (249), Expect = 4e-24
Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 29/198 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ ++ + + F C+ + W G++ + T
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RT---- 521
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEV-AASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L L +V DA Y +N + + + L+ + T + P G
Sbjct: 522 --LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLD-----VLYGPDTPIISPPDSSYLSG 574
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
L C ++P+P W +G+ + L I +T + G Y
Sbjct: 575 ANLNLSCHSASNPSPQYSWRINGIPQQHT---------------QVLFIAKITPNNNGTY 619
Query: 188 KVTAKNELGESNATISLN 205
N N +I +
Sbjct: 620 ACFVSNLATGRNNSIVKS 637
Score = 98.5 bits (245), Expect = 1e-23
Identities = 41/253 (16%), Positives = 73/253 (28%), Gaps = 36/253 (14%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ + + ++ + + F C+ +W+ L R +
Sbjct: 106 VYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGN- 163
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVA-ASINLNFSREQIDGLAPTFLKKPSI 121
T L L +V D YK + +N + S+ LN P
Sbjct: 164 RT------LTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL-----YGPDAPTISPLN 212
Query: 122 RQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
G+ L C ++P W +G + + L I ++T+
Sbjct: 213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE---------------LFIPNITV 257
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
++G Y A N N T V E KP T D+D + +
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTIT-----VYAEPPKPFITSNNSNPVEDED--AVALT 310
Query: 242 CRLVGEPEPTISW 254
C + + W
Sbjct: 311 CEPEIQNTTYLWW 323
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 103 bits (259), Expect = 2e-28
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G P FL+ P +GK +C++ P P + W G V+ D HK + ++G
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
SL I VT DAG Y A N G+++ ++ L + ++ P G
Sbjct: 67 ---SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG-PSSG 110
Score = 78.9 bits (195), Expect = 5e-19
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
+ F P F Q P EG +C++ P PD+ W + D+ M G
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ +L ++ V DAG+Y A N+ G+ + S+ L
Sbjct: 65 VH----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
Score = 37.3 bits (87), Expect = 6e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 214 PGEGTKPVFTERPVTKQSDDDLND---IVIECRLVGEPEPTISW 254
G +P F + P D + + ++C++ G P P +SW
Sbjct: 4 GSSGFRPHFLQAP----GDLTVQEGKLCRMDCKVSGLPTPDLSW 43
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 102 bits (256), Expect = 4e-28
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G+ P PS D+GK L C +P P V WS G ++ ++ +F I+
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L I+DV +D G Y ++ NE G +AT++++
Sbjct: 63 T--TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 80.8 bits (200), Expect = 7e-20
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P P DEG L C P P++ W G ++ +
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL-- 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + DV + D GLY + N+ G +A++N++
Sbjct: 63 -TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 36.9 bits (86), Expect = 8e-04
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G G P P D+ + + C GEP P ++W
Sbjct: 1 GPGIPPKIEALPSDISIDEG-KVLTVACAFTGEPTPEVTW 39
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 108 bits (270), Expect = 4e-28
Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 24/256 (9%)
Query: 8 APSFTQK--PQLRQEDEGNRLIFECQLLCNP-KPDIVWFRGETQLSEDTRTVMKTTPIGT 64
A ++ + + C L N K I W++ +++ T +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
L D+G Y +N + I+ F + +
Sbjct: 63 -----KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 125 DDGKRLLFEC------RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIID 178
C + + + P + W + D H + L +++
Sbjct: 118 --AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK-------DRLIVMN 168
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI 238
V + G Y A I+ + + T+PV D + I
Sbjct: 169 VAEKHRGNYTCHASYTYLGKQYPITRVIEFITL-EENKPTRPVIVSPANETMEVDLGSQI 227
Query: 239 VIECRLVGEPEPTISW 254
+ C + G+ W
Sbjct: 228 QLICNVTGQLSDIAYW 243
Score = 91.7 bits (227), Expect = 5e-22
Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 30/219 (13%)
Query: 8 APSFTQKPQLRQE---DEGNRLIFECQLLC------NPKPDIVWFRGETQLSEDTRTVMK 58
P+ Q + C + N P + W++ L D
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS---REQIDGLAPTF 115
L + +V E G Y A I E+ P
Sbjct: 160 VKDR--------LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI 211
Query: 116 LKKPSIRQE-DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH--------KFSIDKD 166
+ + E D G ++ C + + W +G + ED + +K
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271
Query: 167 GHSYFASLEIIDVTIED-AGKYKVTAKNELGESNATISL 204
+ L I ++ + AKN G A I L
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 104 bits (260), Expect = 1e-27
Identities = 31/205 (15%), Positives = 61/205 (29%), Gaps = 23/205 (11%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV--WFRGETQL--SEDTRTVMKTTPIGT 64
P ++ + EG ++ C + D+ W E + + D R + G
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGN 67
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN----FSREQIDGLAPTFLKKPS 120
L + +V +D G Y + + + +
Sbjct: 68 ------LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFK 121
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
G+ + EC +P P + W + G L+I ++
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS----TSGAV----LKIFNIQ 173
Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
+ED G Y+ A+N G+ +
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIY 198
Score = 71.5 bits (175), Expect = 2e-15
Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 11/148 (7%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSG--VQVKEDKRHKFSIDKD 166
L P ++ + +GK ++ C + W + V + DKR F +
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR-FVSQTN 65
Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
G +L I +V D G Y + + + +
Sbjct: 66 G-----NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
Query: 227 VTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ ++ +EC +G P P I W
Sbjct: 121 KDVYALMG-QNVTLECFALGNPVPDIRW 147
Score = 62.2 bits (151), Expect = 5e-12
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
+ + + + G + EC L NP PDI W + +
Sbjct: 107 RTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA- 165
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L++ ++ D G+Y+ +A+N G+ +
Sbjct: 166 --------VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 100 bits (252), Expect = 2e-27
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 101 LNFSREQID--GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKR 158
++ LA L KP +G+ F C +P PTV W G + R
Sbjct: 1 MHHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
Query: 159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
H+ + K + EI V D G Y V +N G+ A +L
Sbjct: 61 HQVTTTKYKS----TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 78.2 bits (193), Expect = 8e-19
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
A KP+ EG F C P P + W R LS R + TT +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST-- 71
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
E+ V +D G Y V +N G+ A L
Sbjct: 72 ---FEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 35.0 bits (81), Expect = 0.005
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+P + + C GEP PT++W
Sbjct: 14 AARILTKPRSMTVYEG-ESARFSCDTDGEPVPTVTW 48
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 105 bits (263), Expect = 6e-27
Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 19/201 (9%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P+ + D G+ ++ CQ+ W E + S +G
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL---- 214
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
+ + + A+N +G S+ +N +F + +
Sbjct: 215 --TLANVTSDLNRKNVTCWAENDVGRAEVSVQVN----------VSFPASVQLHTAVEMH 262
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA---SLEIIDVTIEDAG 185
+ PAP++ W +G + E + + L + T + G
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322
Query: 186 KYKVTAKNELGESNATISLNF 206
Y + A N G+++A+I F
Sbjct: 323 NYTLLAANPFGQASASIMAAF 343
Score = 75.5 bits (185), Expect = 5e-16
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 22/143 (15%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
PT + D G +L C+++ W + + ++ K G
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGW------ILTELEQSATVMKSGGLPSL 212
Query: 173 SLEIIDVT-IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
L + +VT + A+N++G + ++ +N V V +
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN---------------VSFPASVQLHT 257
Query: 232 DDDLNDIVIECRLVGEPEPTISW 254
+++ I + G+P P++ W
Sbjct: 258 AVEMHHWCIPFSVDGQPAPSLRW 280
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 100 bits (251), Expect = 8e-27
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)
Query: 79 TDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
+G N L E+ + P F K + +G F+C+++
Sbjct: 8 KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
P P V+W VKE + + D++G SL I +V +D KY A N LGE+
Sbjct: 68 YPDPEVMWFKDDNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCKAVNSLGEA 124
Query: 199 NATISLNFDS--DDAPVPGEGTKPVFTE 224
T L ++ + GEG + E
Sbjct: 125 TCTAELLVETMGKEGEGEGEGEEDEEEE 152
Score = 76.4 bits (188), Expect = 1e-17
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P FT+ + EG+ F+C++ P P+++WF+ + + E + G
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN--- 97
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+L + +V D Y KA N +GE + L
Sbjct: 98 -CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 40.6 bits (95), Expect = 9e-05
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 179 VTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDI 238
+ N++ +A + + KP FT+ + + + +
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLE------EVAEEKPHVKPYFTKTILDMEVVEG-SAA 59
Query: 239 VIECRLVGEPEPTISW 254
+C++ G P+P + W
Sbjct: 60 RFDCKVEGYPDPEVMW 75
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 101 bits (253), Expect = 9e-27
Identities = 26/195 (13%), Positives = 54/195 (27%), Gaps = 24/195 (12%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P +G + C + +PDI W + + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG- 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIRQEDD 126
L L V +DAG Y + ++ ++ + L P F +P
Sbjct: 61 --FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEG------VPFFTVEPKDLAVPP 112
Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
C P P T++W ++ + + +
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------PSVLNVTGVTQST 159
Query: 186 KYKVTAKNELGESNA 200
+ A N G +++
Sbjct: 160 MFSCEAHNLKGLASS 174
Score = 83.3 bits (206), Expect = 6e-20
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 23/149 (15%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
+ P G+ + C ++ P + W G V+ + + + +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH--WI 59
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGES---NATISLNFDSDDAPVPGEGTKPVFTERP-- 226
L + V DAG+Y ++ +++ P FT P
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE------------GVPFFTVEPKD 107
Query: 227 VTKQSDDDLNDIVIECRLVGEPEP-TISW 254
+ + + C VG PEP TI W
Sbjct: 108 LAVPPNAP---FQLSCEAVGPPEPVTIVW 133
Score = 48.3 bits (115), Expect = 3e-07
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNK 66
P FT +P+ C+ + P+P IVW+RG T++
Sbjct: 98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----------PS 146
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
V L+ T + ++ +A N G ++
Sbjct: 147 PSV---LNVTGVTQSTMFSCEAHNLKGLASSR 175
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 101 bits (254), Expect = 1e-26
Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 12/215 (5%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
S Q E + C P + W + + + T ++
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 69 VA---LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED 125
+ + V D G Y + G+ ++++ + + P+
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL----VPPSKPTISVPSSVT 117
Query: 126 DGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF----ASLEIIDVT 180
G R + C P W G+ + K + L VT
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
D+G+Y A+N G + + + + D+ + V G
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
Score = 75.4 bits (185), Expect = 1e-16
Identities = 25/149 (16%), Positives = 38/149 (25%), Gaps = 18/149 (12%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF- 171
+ S Q + + + C +P V W + I
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 172 ---ASLEIIDVTIEDAGKYKVTAKNELGE--SNATISLNFDSDDAPVPGEGTKPVFTERP 226
+ + VT +D G+Y E G+ +I L P
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV----------PPSKPTIS 111
Query: 227 VTKQSDDDLNDIVIECRLV-GEPEPTISW 254
V N V+ C G P SW
Sbjct: 112 VPSSVTIG-NRAVLTCSEHDGSPPSEYSW 139
Score = 59.2 bits (143), Expect = 7e-11
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
PS GNR + C +P + WF+ + + +
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 66 KYLVA---LELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L D V D+G Y +A+N G S +
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 33.4 bits (76), Expect = 0.040
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
K Q ++ I + C G P + W
Sbjct: 1 KGSVYTAQSDVQVPEN-ESIKLTCTYSGFSSPRVEW 35
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 98.2 bits (245), Expect = 1e-26
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P F++ P D+G+ + ++ PAP V W +G V+ D HK + + G
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG---L 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
SL V DAG Y AKN GE+ T+ L+
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 80.1 bits (198), Expect = 1e-19
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F Q P+ DEG + ++ P PD+ W+ + D M + G +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH-- 62
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+L + V +DAG Y AKN+ GE ++ L+
Sbjct: 63 --SLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 32.7 bits (75), Expect = 0.023
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P F + P D+ ++ ++ G P P +SW
Sbjct: 6 PRFIQVPENMSIDEG-RFCRMDFKVSGLPAPDVSW 39
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 98.3 bits (245), Expect = 2e-26
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 112 APTF--LKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
P L++P +R E E ++ +P PT+ W H+G ++E K ++G
Sbjct: 8 PPRVVSLEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKP 220
L T + G Y + AKN LG +N TI+ +F P P + P
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF--LKEPFPVDEVSP 111
Score = 67.1 bits (164), Expect = 1e-14
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 7 FAPSFTQ--KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+ P +P+LR E E + NP P + W L E ++
Sbjct: 7 YPPRVVSLEEPELRLEH-----CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EG 60
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
L + + G Y + AKN +G +IN +F
Sbjct: 61 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 31.7 bits (72), Expect = 0.064
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 220 PVFT--ERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P E P + + IE + G P PT+ W
Sbjct: 9 PRVVSLEEPELRL------EHCIEFVVRGNPPPTLHW 39
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 97.3 bits (242), Expect = 5e-25
Identities = 31/200 (15%), Positives = 51/200 (25%), Gaps = 24/200 (12%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
F P G CQL P++ W R L T + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 68 LV----ALELDDVIETDAGLYKVKAKNKMGE-VAASINLNFSREQIDGLAPTFLKKPSIR 122
L + + +D G Y+ V+ + P FL++P R
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG------LPYFLEEPEDR 116
Query: 123 QEDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTI 181
C+ Q P P + W V + H + +
Sbjct: 117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----------GPQRSLHVPGL 165
Query: 182 EDAGKYKVTAKNELGESNAT 201
+ A N G + +
Sbjct: 166 NKTSSFSCEAHNAKGVTTSR 185
Score = 74.6 bits (183), Expect = 1e-16
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 23/152 (15%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSI-----DKD 166
F+ P G C++Q P V W G ++ + + ++D
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGE---SNATISLNFDSDDAPVPGEGTKPVFT 223
+ L I + + D G+Y+ + L P F
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE------------GLPYFL 110
Query: 224 ERPVTKQSDDDLNDIVIECRLVGEPEPT-ISW 254
E P + + + C+ G PEP + W
Sbjct: 111 EEPEDRTVAAN-TPFNLSCQAQGPPEPVDLLW 141
Score = 47.6 bits (113), Expect = 7e-07
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNK 66
P F ++P+ R CQ P+P D++W + L+ + +
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS------ 159
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
L + + + +A N G +
Sbjct: 160 ----LHVPGL--NKTSSFSCEAHNAKGVTTSR 185
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 99.3 bits (247), Expect = 5e-25
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 12/203 (5%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
+D A + Q E + C L + + R + +P
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNY-SFSPWH 144
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
+ + Y+ A +V SI++ +++ P P+
Sbjct: 145 G------FTIHRAKFIQSQDYQCSALMGGRKVM-SISIRLKVQKVIPGPPALTLVPAELV 197
Query: 124 EDDGKRLLFECRIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
G+ C + + H+ ++ ++ F ++ +L + V +
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL--TLNLDQVDFQ 255
Query: 183 DAGKYKVTAKNELGESNATISLN 205
AG Y A N G+ + ++
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFR 278
Score = 76.9 bits (189), Expect = 9e-17
Identities = 29/250 (11%), Positives = 56/250 (22%), Gaps = 38/250 (15%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
P G + C + W G++ L
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVG----NGSVEWDG-------PPSPHWTLYSDGSSSIL 53
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
++ + G Y+ +A+I+L + A + + +
Sbjct: 54 S---TNNATFQNTGTYRCTEPGDPLGGSAAIHLY-----VKDPARPWNVLAQEVVVFEDQ 105
Query: 129 RLLFECRIQA-DPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
L C + V G + + FS I +
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH-------GFTIHRAKFIQSQD 158
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP--VTKQSDDDLNDIVIECRL 244
Y+ +A G +IS+ P T P + + + I C
Sbjct: 159 YQCSALMG-GRKVMSISIRLKVQKVI----PGPPALTLVPAELVRIRGEAA---QIVCSA 210
Query: 245 VGEPEPTISW 254
+
Sbjct: 211 SSVDVNFDVF 220
Score = 55.7 bits (134), Expect = 2e-09
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 4/100 (4%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPI 62
P+ T P G C V T+L+ ++
Sbjct: 182 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY 241
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L LD V AG Y A N G+ + S+
Sbjct: 242 QKVLTLN---LDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 93.9 bits (234), Expect = 8e-25
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP + + G+ F +Q+ P V W H+GV+++E + ++
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL--- 64
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+LEI+D +D+G Y+ N GE++ +L+
Sbjct: 65 -TLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 82.0 bits (203), Expect = 3e-20
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
D AP T + + + G F + P ++ W+ +L E ++
Sbjct: 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-----NT 60
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
++ LE+ D D+G Y+ N GE + L+
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
Score = 33.4 bits (77), Expect = 0.015
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P T R + + + + +P + W
Sbjct: 8 APRITLRMRSHRVPCG-QNTRFILNVQSKPTAEVKW 42
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 93.2 bits (232), Expect = 2e-24
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP F+ KP ++ +G + EC+I A P P + W + V+ + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV- 73
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L I DV +DAG Y V+A NE G + L+
Sbjct: 74 -TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 77.4 bits (191), Expect = 2e-18
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP F KPQ ++ EG+ + ECQ+ P P + W R + +T + N
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ---DNTG 71
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
V L + DV + DAG Y V A N+ G + L+
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 35.1 bits (81), Expect = 0.004
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 216 EGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P+F +P +K+ + + + +EC++ P P + W
Sbjct: 12 HKRAPMFIYKPQSKKVLEG-DSVKLECQISAIPPPKLFW 49
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 97.7 bits (243), Expect = 2e-24
Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 14/202 (6%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFR-GETQLSEDTRTVMKTTPIG 63
D A S+ Q EG + C + K + R G Q+ T +P
Sbjct: 87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF--SPWR 144
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
+ D+ Y K G + S + ++ P +PS
Sbjct: 145 G------FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197
Query: 124 EDDGKRLLFECRIQADPAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
G+ C + G +++ F + +L + V +
Sbjct: 198 RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVR--ALSLNAVDFQ 255
Query: 183 DAGKYKVTAKNELGESNATISL 204
DAG Y A N++G AT++
Sbjct: 256 DAGIYSCVASNDVGTRTATMNF 277
Score = 86.2 bits (213), Expect = 3e-20
Identities = 35/249 (14%), Positives = 59/249 (23%), Gaps = 34/249 (13%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP + G + C + W + T+ +P T
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCV----SNGSVEWDGPISPY----WTLDPESPGST--- 52
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + + G Y+ + +I+L + A ++ +G
Sbjct: 53 ---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLY-----VKDPAHSWNLLAQEVTVVEG 104
Query: 128 KRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ + C I +V G + K F G I + D+
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG------FIIRKAKVLDSNT 158
Query: 187 YKVTAKNELGES-NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
Y ES + I L + P P P P I C
Sbjct: 159 YVCKTMVNGRESTSTGIWLKV-NRVHPEP-----PQIKLEPSKLVRIRG-EAAQIVCSAT 211
Query: 246 GEPEPTISW 254
Sbjct: 212 NAEVGFNVI 220
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 93.2 bits (232), Expect = 2e-24
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P ++ P ++ G+ + ++ T W Q++E + K ++G
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS--- 63
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGT 218
L I+ E G Y + +N+LG A ++L D P P GT
Sbjct: 64 -KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV--VDKPDPPAGT 107
Score = 78.9 bits (195), Expect = 4e-19
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G + P Q P+ ++ G + ++ W + Q+ E ++ +
Sbjct: 1 GSSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSE 60
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
G+ L + + G Y + +NK+G A +NL
Sbjct: 61 NGS-----KLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 32.7 bits (75), Expect = 0.029
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 218 TKPVFTERPVTKQSDDDL-----NDIVIECRLVGEPEPTISW 254
+ P + P +D + + ++ G T +W
Sbjct: 6 SGPQIIQFP------EDQKVRAGESVELFGKVTGTQPITCTW 41
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 92.4 bits (230), Expect = 3e-24
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 104 SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI 163
+ G P FL+ P + G +C + +P P V+W G Q+ +R F
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
D H L + DAG Y A+N GE+ A ++
Sbjct: 65 DGAEH----GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 75.5 bits (186), Expect = 9e-18
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P F + P+ + G +C +L P P +VW +G QL+ R
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG-- 70
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L L + TDAG+Y +A+N GE A+ +
Sbjct: 71 ---LLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
A +G+ P F P + + ++C ++GEP P + W
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSG-AEAELKCVVLGEPPPVVVW 47
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 91.2 bits (227), Expect = 7e-24
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P + F + +P PT IW+ G + + ++K S DK G
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF--- 62
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
LEI D+G Y T KN G +++ L
Sbjct: 63 -FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 75.0 bits (185), Expect = 1e-17
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P Q + F + P+P +W + +++ + + +K
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLS-----EDKG 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
LE+ +D+GLY KN G V++S L
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 37.3 bits (87), Expect = 5e-04
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P+ +KPV D + + GEP PT W
Sbjct: 1 GPI---SSKPVIVTGLQDTTVSSD-SVAKFAVKATGEPRPTAIW 40
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 91.2 bits (227), Expect = 7e-24
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP ++ + G F R+ P P W +GV+++ R + +D
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---V 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L I DVT ED+ V A N GE+++ L
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 79.2 bits (196), Expect = 3e-19
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP ++ Q + +G+ F +++ P P+ W++ ++ R
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN---- 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ L + DV D+ VKA N GE ++ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
Score = 33.4 bits (77), Expect = 0.012
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 220 PVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P ER ++ +D R+VG+P+P W
Sbjct: 6 PKIFERIQSQTVGQG-SDAHFRVRVVGKPDPECEW 39
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 91.0 bits (226), Expect = 9e-24
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS- 169
APT S ++ +P P + W ++G + E K I H+
Sbjct: 3 FAPTITFLESPTS---DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNF 206
Y L++ + T + G Y + AKNE G+ IS +F
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 79.4 bits (196), Expect = 3e-19
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
FAP+ T L + + NPKP + WF L+E K +
Sbjct: 3 FAPTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
Y L+LD+ + G Y + AKN+ G+ I+ +F
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
Score = 32.8 bits (75), Expect = 0.024
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 236 NDIVIECRLVGEPEPTISW 254
+ I + G P+P + W
Sbjct: 17 HHWCIPFTVKGNPKPALQW 35
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 90.5 bits (225), Expect = 1e-23
Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
L P L + G E P PT W+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT-- 58
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
S+ D+G YK+ KNELGE A +
Sbjct: 59 --SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 76.6 bits (189), Expect = 2e-18
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + + G E + P P W G++ + ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKS-----S 56
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
++ D+G YK+K KN++GE A +
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 31.1 bits (71), Expect = 0.085
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 236 NDIVIECRLVGEPEPTISW 254
+E +G P+PT +W
Sbjct: 18 FTHNLEVDFIGAPDPTATW 36
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 90.4 bits (225), Expect = 1e-23
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
PTF + +G+ ++ R+Q +P P V W + V+ D+R + G
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG---L 61
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L I+ DAG Y A NE G L
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 78.9 bits (195), Expect = 4e-19
Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P+F + EG +I ++ PKP + W R + D R
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA----EEAEGG 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L L + DAG Y KA N+ G L
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 33.4 bits (77), Expect = 0.015
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G P F + + + D+++ R+ GEP+P +SW
Sbjct: 1 GSKAPPTFKVSLMDQSVREG-QDVIMSIRVQGEPKPVVSW 39
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 88.8 bits (220), Expect = 1e-22
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 119 PSIRQEDDGKRLLFEC---RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG---HSYFA 172
P+ Q + C + PAP++ W +G + E +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVF--TERPVTKQ 230
L + T + G Y + A N G+++A+I F + E P T ++
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEK 123
Query: 231 SDD 233
D+
Sbjct: 124 KDE 126
Score = 66.9 bits (163), Expect = 3e-14
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 15 PQLRQEDEGNRLIFECQLLC----NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV- 69
P Q + C + P P + W + L+E + + N+ +
Sbjct: 4 PASVQLHTAVEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH 62
Query: 70 -ALELDDVIETDAGLYKVKAKNKMGEVAASINLNF 103
L L+ + G Y + A N G+ +ASI F
Sbjct: 63 GCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97
Score = 27.6 bits (61), Expect = 1.9
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 235 LNDIVIECRLVGEPEPTISW 254
++ I + G+P P++ W
Sbjct: 15 MHHWCIPFSVDGQPAPSLRW 34
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 87.4 bits (217), Expect = 3e-22
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED-KRHKFSIDKDGHSY 170
AP F K + +G + F CR+ +P P + W G Q+ + D DG
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG--- 64
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
SL T++D G Y + A N G + T L + ++ P G
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG-PSSG 110
Score = 75.5 bits (186), Expect = 8e-18
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDT-RTVMKTTPI 62
AP F K + + EG + F C++ NPKP I WF+ Q+S + ++
Sbjct: 4 GSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 63
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
GT +L D G Y + A N G ++ + L
Sbjct: 64 GT----CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G P F + + + + CR+ G P+P I W
Sbjct: 4 GSSGAPFFEMKLKHYKIFEG-MPVTFTCRVAGNPKPKIYW 42
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 92.4 bits (228), Expect = 1e-21
Identities = 29/264 (10%), Positives = 74/264 (28%), Gaps = 23/264 (8%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLS-----------EDT 53
P ++ D G + C ++ +
Sbjct: 110 SQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNY 169
Query: 54 RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAP 113
++ GT + L ++ ++ + +DAG Y +A + + +L + + + +
Sbjct: 170 TGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229
Query: 114 TFLKKPSIR---QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+ + F CR + V+ + G + + ++
Sbjct: 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLG-KRAPAFEGRILLNPQDKDG 288
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
S+ I + EDAG+Y A ++ + + P +
Sbjct: 289 SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS 348
Query: 231 SDDDLNDIVIECRLVGEPEPTISW 254
+ + C + +I +
Sbjct: 349 -------VAVLCPYNRKESKSIKY 365
Score = 84.7 bits (208), Expect = 6e-19
Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 29/252 (11%)
Query: 19 QEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
+ N F C+ D+V G+ + + R ++ ++ + +
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQD---KDGSFSVVITGLR 298
Query: 78 ETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ 137
+ DAG Y A + S + + T + P++ + G + C
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE--ESTIPRSPTVVKGVAGSSVAVLCPYN 356
Query: 138 ADPAPTVIW---------------SHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+ ++ + S VK + S+ ++ + ++ + +T
Sbjct: 357 RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR 416
Query: 183 DAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
DAG Y + T+ + + + G + C
Sbjct: 417 DAGFYWCLTNGD-TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP-------CHFPC 468
Query: 243 RLVGEPEPTISW 254
+ + W
Sbjct: 469 KFSSYEKYWCKW 480
Score = 70.8 bits (172), Expect = 3e-14
Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 21/257 (8%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
+ + P + + G+ + C I W E + ++ + +Y
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391
Query: 68 -------------LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPT 114
+ L+ + DAG Y + + +
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL---WRTTVEIKIIEGEPNLKV 448
Query: 115 FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV---KEDKRHKFSIDKDGHSYF 171
++ E F C+ + W+++G Q +++ K ++ D +S
Sbjct: 449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
SL + VT D G Y K T ++ ++ G + +
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQG-HFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEK 567
Query: 232 DDDLNDIVIECRLVGEP 248
D IE + + +P
Sbjct: 568 VLDSGFREIENKAIQDP 584
Score = 50.8 bits (120), Expect = 1e-07
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
CR A + S G V + ++ + + I ++ +D+G+YK
Sbjct: 38 CRQGARGGCITLISSEG-YVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGI 96
Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTIS 253
+ +SL + V R VT I C E
Sbjct: 97 NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT-----------INCPFKTENAQKRK 145
Query: 254 W 254
Sbjct: 146 S 146
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 84.7 bits (210), Expect = 2e-21
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP+F +G+ + +C ++ P P + W +G ++ + + G
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST----CEAGV--- 63
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
A L I D ED G Y A+N LG+ + + +
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 73.5 bits (181), Expect = 4e-17
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
APSF+ + EG + +C + P P I W + T +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC--EAGVAE--- 65
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + D + D G Y A+N +G+V+ S +
Sbjct: 66 ---LHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 35.8 bits (83), Expect = 0.002
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P F+ + D V++C + G P P I+W
Sbjct: 11 APSFSSVLKDCAVIEG-QDFVLQCSVRGTPVPRITW 45
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 85.9 bits (212), Expect = 7e-21
Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 31/194 (15%)
Query: 20 EDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVI 77
ED G++++ C L + W +G L ED K E
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK------------TEFKVDS 57
Query: 78 ETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQ 137
+ G Y E + N+ P S ++G+ + C+ +
Sbjct: 58 DDQWGEYSCVFLP---EPMGTANIQLHG------PPRVKAVKSSEHINEGETAMLVCKSE 108
Query: 138 ADP-APTVIWSHS----GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE-DAGKYKVTA 191
+ P W + +F + L I ++ +E D G+Y+
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRS--ELHIENLNMEADPGQYRCNG 166
Query: 192 KNELGESNATISLN 205
+ G A I+L
Sbjct: 167 TSSKGSDQAIITLR 180
Score = 50.0 bits (119), Expect = 8e-08
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKT-TPIGTNK 66
P +EG + C+ P D W++ + ++ + +++
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 67 YLVALELDDV-IETDAGLYKVKAKNKMGEVAASINLN 102
L ++++ +E D G Y+ + G A I L
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 89.2 bits (220), Expect = 8e-21
Identities = 31/254 (12%), Positives = 65/254 (25%), Gaps = 31/254 (12%)
Query: 22 EGNRLIFECQLLC-----------NPKPDIVWFR--GETQLSEDTRTVMKTTPIGTNKYL 68
E +C L + ++W+ + L E + I K
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD- 79
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
L + D G Y +N + L ++ +P L + E +
Sbjct: 80 -VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138
Query: 129 RLL---FECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
R+ + + PT+ W +++ +L + I + G
Sbjct: 139 RITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM--------NLSFLIALISNNG 190
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFT-ERPVTKQSDDDLNDIVIECR- 243
Y ++ P PV + +++I C
Sbjct: 191 NYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250
Query: 244 ---LVGEPEPTISW 254
+ + + W
Sbjct: 251 YFSFLMDSRNEVWW 264
Score = 81.5 bits (200), Expect = 4e-18
Identities = 33/218 (15%), Positives = 65/218 (29%), Gaps = 31/218 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFEC-QLLC----NPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
S + P + E C + + KP I W+ G ++ + +
Sbjct: 121 NSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM--- 177
Query: 64 TNKYLVALELDDVIETDAGLYKVKAK----NKMGEVAASINLNFSREQIDGLAPTFL--K 117
L + ++ G Y + + ++ + + + P
Sbjct: 178 ------NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231
Query: 118 KPSIRQEDDGKRLLFECRI----QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-- 171
+ +++ G+ LL C + D V W+ G + + + HS
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 172 ----ASLEIIDVTIED-AGKYKVTAKNELGESNATISL 204
L I VT ED Y A++ GE +
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 82.9 bits (205), Expect = 1e-20
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 112 APTFLKKPSIRQED----DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
AP + + + + F C +P PT+ W +G + K++ R ++
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
H SL + V D G Y +NE G N T L+
Sbjct: 64 HW---SLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 69.4 bits (170), Expect = 1e-15
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 8 APSFTQKPQLRQED----EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
AP +T ++ + N + F C NP P + W + + ++ R
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L ++ V+ +D G Y +N+ G + + +L+
Sbjct: 64 HWS----LIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 31.6 bits (72), Expect = 0.062
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 220 PVFTERPVTKQSDDDL---NDIVIECRLVGEPEPTISW 254
P +T ++ + N + C G P PT+ W
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRW 42
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 88.0 bits (217), Expect = 2e-20
Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 18/208 (8%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLL-CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
PS + + + C +L +I W++ +L D ++
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN---- 183
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSRE---QIDGLAPTFLKKPSIRQ 123
L + + D+G Y + I ++ + L
Sbjct: 184 ----LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239
Query: 124 EDDGKRLLFECRIQADPAP----TVIWSHSGVQVKEDKRHKFSIDKDGHSYF-ASLEIID 178
G+ C + + W + + +SI A+L +
Sbjct: 240 VTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN 299
Query: 179 VTIEDAGK-YKVTAKNELGESNATISLN 205
VT E G Y N + T ++
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 76.8 bits (188), Expect = 2e-16
Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 39/248 (15%)
Query: 22 EGNRLIFECQLL---------CNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
G +C + + + W + R V L
Sbjct: 43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGD----------LW 92
Query: 73 LDDVIETDAG-LYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLL 131
+ + D+ Y K G+ I + R+ P+ + + D +
Sbjct: 93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK-----PPSCIPETYELGTHDKYGID 147
Query: 132 FECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVT 190
C I A + W + ++ D K+S +L I + +ED+G+Y
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQ------NLIIHNPELEDSGRYDCY 200
Query: 191 AKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEP 250
+ I ++ +P + + P + + I C V
Sbjct: 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGE--PANITCTAVSTSLL 258
Query: 251 ----TISW 254
I W
Sbjct: 259 VDDVLIDW 266
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 84.4 bits (208), Expect = 5e-20
Identities = 26/210 (12%), Positives = 56/210 (26%), Gaps = 40/210 (19%)
Query: 22 EGNRLIFECQLLCNPKP----DIVWFRGETQLSE---------------------DTRTV 56
+G C+ +P+ DI W + R
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 57 MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
+ + + ++ + ++ +D G Y+ K K G L + P+
Sbjct: 74 FTSNDVKSGD--ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL------VKPSGT 125
Query: 117 KKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
+ E+ G +C + W +
Sbjct: 126 RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-EMTSP-----VIS 179
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ + + E +G Y T +N +G + L+
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 53.5 bits (128), Expect = 6e-09
Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 38/154 (24%)
Query: 127 GKRLLFECRIQADPAPT----VIWSHSGVQVKE---------------------DKRHKF 161
G+ C+ P + W S + R F
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 162 SIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPV 221
+ D S AS+ + ++ + D G Y+ K G +N L KP
Sbjct: 75 T-SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV----------KPS 123
Query: 222 FTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
T V + ND ++C G W
Sbjct: 124 GTRCFVDGSEEIG-NDFKLKCEPKEGSLPLQFEW 156
Score = 52.0 bits (124), Expect = 2e-08
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFR-GETQLSEDTRTVMKTTPIGTN 65
PS T+ E+ GN +C+ + W + ++Q T+P+
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--- 177
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ + + +G Y +N++G + L+
Sbjct: 178 -----ISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 82.0 bits (202), Expect = 6e-20
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 9/102 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
F++ P +Q G + C P P + W G + + + +
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80
Query: 172 ---------ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
+++ I + ED G Y+ A N+ ++ T +
Sbjct: 81 HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Score = 72.4 bits (177), Expect = 3e-16
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
F Q P +Q G + C+ + +P P+I W+ ++ + +
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHI 80
Query: 68 LVA--------LELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ +D ++E D G Y+ +A N +
Sbjct: 81 HATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
Score = 44.6 bits (105), Expect = 4e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
VP F + P+++Q + + C VG P P I W
Sbjct: 15 VPRGSHMAGFVQAPLSQQRWVG-GSVELHCEAVGSPVPEIQW 55
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 80.5 bits (199), Expect = 1e-19
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
++ +APT + G+ + C +P P ++W + ED DG
Sbjct: 6 LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK---DG 62
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ +L I V ED G Y A + LG +
Sbjct: 63 NR---NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 68.9 bits (169), Expect = 2e-15
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
AP+ T + + G + C NP P I+WF+ L ED+ V+
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-KDGNRN--- 65
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + V + D GLY +A + +G
Sbjct: 66 ---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 33.8 bits (78), Expect = 0.011
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 216 EGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
E P T + + I + C G P P I W
Sbjct: 7 ERVAPTITGNLENQTTSIG-ESIEVSCTASGNPPPQIMW 44
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 83.2 bits (205), Expect = 1e-19
Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 27/196 (13%)
Query: 23 GNRLIFECQLL---CNPKPDIVWFR---GETQLSEDT------------RTVMKTTPIGT 64
G R+ P+ ++ WF+ GE Q+ R
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
+LV + + G Y + K EV +L+ + T Q
Sbjct: 66 TFFLV---VTAANISHDGNYLCRMKLGETEVTKQEHLSVVK------PLTLSVHSERSQF 116
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
D L C + A P P V W + K+ + + +
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 185 GKYKVTAKNELGESNA 200
KN+ E++
Sbjct: 177 LPVTCVGKNDKEEAHG 192
Score = 63.1 bits (153), Expect = 3e-12
Identities = 24/146 (16%), Positives = 41/146 (28%), Gaps = 31/146 (21%)
Query: 127 GKRLLFEC---RIQADPAPTVIWSHSGVQVKED---------------KRHKFSIDKDGH 168
G+R+ R+ P V W G ++ R F I + +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVT 228
++ L + I G Y K E L+ P +
Sbjct: 66 TF--FLVVTAANISHDGNYLCRMKLGETEVTKQEHLS-----VVKP-----LTLSVHSER 113
Query: 229 KQSDDDLNDIVIECRLVGEPEPTISW 254
Q D + + + C + P P + W
Sbjct: 114 SQFPDF-SVLTVTCTVNAFPHPHVQW 138
Score = 54.7 bits (131), Expect = 2e-09
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 1/89 (1%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ + + Q + + L C + P P + W E T + L
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM-KEKDGSL 163
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAA 97
+ + KN E
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 81.6 bits (201), Expect = 3e-19
Identities = 21/196 (10%), Positives = 50/196 (25%), Gaps = 40/196 (20%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA----------- 70
+G+ + C W + T
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 71 -LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
L + ++ D+ Y + +++ EV Q+ T + Q G+
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEV-----------QLLVFGLTANSDTHLLQ---GQS 114
Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
L +P+V + + + +L + + ++D+G +
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK--------------TLSVSQLELQDSGTWTC 160
Query: 190 TAKNELGESNATISLN 205
T + I +
Sbjct: 161 TVLQNQKKVEFKIDIV 176
Score = 59.6 bits (144), Expect = 3e-11
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 34/142 (23%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-------------AS 173
G + C + W +S + F
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPV-PGEGTKPVFTERPVTKQSD 232
L I ++ IED+ Y +++ E + + D + G+
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQ---------------- 113
Query: 233 DDLNDIVIECRLVGEPEPTISW 254
+ + P++
Sbjct: 114 ----SLTLTLESPPGSSPSVQC 131
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 79.7 bits (197), Expect = 3e-19
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 88 AKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE---DDGKRLLFECRIQADPAPTV 144
+ G +A + + E P +RQ G++L Q P P V
Sbjct: 2 SSGSSGTLAQPVTIREIAE-----PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV 56
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
+W+ G + + H + D D + D+G+Y+++ + E + ATI +
Sbjct: 57 VWTKGGAPLDTSRVHVRTSDFD-----TVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Query: 205 N 205
Sbjct: 112 R 112
Score = 64.7 bits (158), Expect = 1e-13
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 8 APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P LRQ G +L P+P +VW +G L R ++T+ T
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRTSDFDT 79
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ +D+G Y++ + + + A+I +
Sbjct: 80 V-----FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 30.4 bits (69), Expect = 0.20
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 198 SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
S+ T++ + P + P + ++ + LN + G+P P + W
Sbjct: 5 SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLN---LVVPFQGKPRPQVVW 58
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 83.2 bits (205), Expect = 5e-19
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 21/201 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P T + Q Q + C P I W + ++ + GT
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS--GTVTV 175
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE--VAASINLNFSREQIDGLAPTFLKKPSIRQED 125
L + D K +++ E ++NL + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-----VYYPPEVSISGYDNNWYL 230
Query: 126 DGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
C +++P PT WS + + F++ + L I V
Sbjct: 231 GQNEATLTCDARSNPEPTGYNWSTTMGPLPP-----FAVAQGA-----QLLIRPVDKPIN 280
Query: 185 GKYKVTAKNELGESNATISLN 205
N LG A +++
Sbjct: 281 TTLICNVTNALGARQAELTVQ 301
Score = 72.1 bits (176), Expect = 6e-15
Identities = 37/270 (13%), Positives = 67/270 (24%), Gaps = 46/270 (17%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKPD-----IVWFR-------------GETQLSED 52
Q P G+ + C L + W R SE
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 53 TRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNK-MGEVAASINLNFSREQIDGL 111
R +G +L + + D G Y G + I L
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL------A 116
Query: 112 APTFLKKPSIRQEDDGKRLLFECR-IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
P + Q + C P + W + + + +
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTV-TV 175
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQ 230
+ ++ + D ++E E +++N V+ V+
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT-------------VYYPPEVSIS 222
Query: 231 SDDDL-----NDIVIECRLVGEPEPT-ISW 254
D+ N+ + C PEPT +W
Sbjct: 223 GYDNNWYLGQNEATLTCDARSNPEPTGYNW 252
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 82.3 bits (202), Expect = 6e-19
Identities = 36/246 (14%), Positives = 58/246 (23%), Gaps = 51/246 (20%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIVWFRGETQLSEDTRTVMKTTPIGTN 65
+ + G + C P I W +G + G
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 66 KYLVA------------------------LELDDVIETDAGLYKVKAKNK-----MGEVA 96
V L L V D G Y + G A
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 97 ASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKED 156
S+ L + + + Q D+G + C V W +
Sbjct: 123 KSVVLKVTGH--TPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENY 180
Query: 157 KR----HKFSIDKDGHSYF-------------ASLEIIDVTIEDAGKYKVTAKNELGESN 199
+ + ++ G ++F +L I I DAG+ GE +
Sbjct: 181 ETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD 240
Query: 200 ATISLN 205
A S
Sbjct: 241 ADRSST 246
Score = 53.4 bits (127), Expect = 1e-08
Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 30/156 (19%)
Query: 127 GKRLLFECRIQA---DPAPTVIWSHSGVQVKEDKRHK--FSIDKDGHSYF---------- 171
G + C Q P + W + K K ++ +G +
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFG 76
Query: 172 -------------ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGT 218
+L + V +D G+Y + + S V G
Sbjct: 77 DFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLD--AKSVVLKVTGHTP 134
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
D+ NDI + C ++W
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW 170
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 78.5 bits (193), Expect = 1e-18
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIWSHSGVQVKEDK-----RHKFSI 163
F++KP G+ + F +++A+ PT+ W K + K +
Sbjct: 7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF 66
Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
++ Y ++II AG Y+ + + + L
Sbjct: 67 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 71.6 bits (175), Expect = 4e-16
Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRG---ETQLSEDTRT 55
G + F +KPQ G + F ++ KP I WF+G +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 56 VMKTTP-IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+K T + Y +++ + AG Y+ + K + S +L
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 80.3 bits (198), Expect = 2e-18
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 14/151 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
AP ++ + G ++ C + A P+ T+ W G + I +
Sbjct: 19 APKLQGPVAVYTWE-GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA-- 75
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN-FDSDDAPVPGEGTKPVFTERPVT-- 228
+ LE+ + D G Y TA N +G+ + L D+ +P +
Sbjct: 76 SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEP---YSSTAQVQ 132
Query: 229 -KQSDDDLN----DIVIECRLVGEPEPTISW 254
+ + E R VGE W
Sbjct: 133 FDEPEATGGVPILKYKAEWRAVGEEVWHSKW 163
Score = 67.9 bits (166), Expect = 5e-14
Identities = 46/223 (20%), Positives = 75/223 (33%), Gaps = 38/223 (17%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
+AP Q P EGN++ C++ P I WFR L + +K I
Sbjct: 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK---IYNTP 73
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN-------FSREQIDGLAPTFL--- 116
LE+ E D G Y A N++G+ + L S +Q++ + T
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQF 133
Query: 117 KKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKE-DKRHKFSID--KDGHSYFAS 173
+P E G + + + + +W KE +I K +Y
Sbjct: 134 DEP----EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY--- 186
Query: 174 LEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGE 216
++ A N G + + F + PV GE
Sbjct: 187 ------------AVRLAALNGKGLGEISAASEFKTQ--PVQGE 215
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.5 bits (191), Expect = 2e-18
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P + P + + C P PT++W GV V ++G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLENG---- 62
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
L+I + D G+Y A GE+ + +
Sbjct: 63 -VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 65.9 bits (161), Expect = 5e-14
Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P Q P + + C +P P I+W + +S +K G
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-RIKQLENGV--- 63
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
L++ D G Y A GE S +
Sbjct: 64 ---LQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 39.0 bits (91), Expect = 2e-04
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G PV + PV + D V+ C G P PTI W
Sbjct: 2 SSGSSGPPVIRQGPVNQTVAVD-GTFVLSCVATGSPVPTILW 42
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 81.3 bits (200), Expect = 2e-18
Identities = 27/202 (13%), Positives = 50/202 (24%), Gaps = 13/202 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQ-LSEDTRTVMKTTPIGTNKY 67
E + + C L + + L D V
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFV-----PNPKAG 146
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+ + + A+ G S + P + G
Sbjct: 147 I--TIKNVKRAYHRLCVRCAAQRD-GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203
Query: 128 KRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDG---HSYFASLEIIDVTIED 183
C I+ +W Q + + K + G + +L I ++D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 184 AGKYKVTAKNELGESNATISLN 205
+G + A N G +N T +L
Sbjct: 264 SGVFMCYANNTFGSANVTTTLK 285
Score = 55.5 bits (133), Expect = 2e-09
Identities = 27/255 (10%), Positives = 50/255 (19%), Gaps = 43/255 (16%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIG 63
E PS + G+ L C + W +T
Sbjct: 8 GEPSPPSIHPAQSELIVEAGDTLSLTCI----DPDFVRWTF---------KTYFNEMVEN 54
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
+ + T G Y N + +SI +
Sbjct: 55 KKNEWI---QEKAEATRTGTYTCSNSNGLT---SSIYVFVRD------PAKLFLVGLPLF 102
Query: 124 EDDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT-I 181
+ L C + G + D + + I +V
Sbjct: 103 GKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA-------GITIKNVKRA 155
Query: 182 EDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
+ A+ + + +L V P T + +
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLK-------VREAIKAIPVVSVPETSHLLKKGDTFTV 208
Query: 241 ECRLVGEPEP-TISW 254
C + W
Sbjct: 209 VCTIKDVSTSVNSMW 223
Score = 54.4 bits (130), Expect = 6e-09
Identities = 22/150 (14%), Positives = 37/150 (24%), Gaps = 35/150 (23%)
Query: 111 LAPTFLKKPSIRQEDD------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSID 164
+P PSI G L C V W+ + ++ +
Sbjct: 5 ASPGEPSPPSIHPAQSELIVEAGDTLSLTCIDP----DFVRWTF------KTYFNEMVEN 54
Query: 165 KDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTE 224
K G Y + N L ++I + D P+F +
Sbjct: 55 KKN-----EWIQEKAEATRTGTYTCSNSNGLT---SSIYVFV--RDPAKLFLVGLPLFGK 104
Query: 225 RPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+D ++ C L S
Sbjct: 105 ED---------SDALVRCPLTDPQVSQYSL 125
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 80.5 bits (198), Expect = 4e-18
Identities = 20/194 (10%), Positives = 51/194 (26%), Gaps = 19/194 (9%)
Query: 13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
+ E + C++ +P+ + + ++ + G
Sbjct: 100 AEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFSGIF------- 151
Query: 73 LDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
+ Y K EV + + ++ + G+ +
Sbjct: 152 -------EDRSYICKTTIGDREVDSDAYYVY---RLQVSSINVSVNAVQTVVRQGENITL 201
Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS-LEIIDVTIEDAGKYKVTA 191
C + + W++ + D + S L I +ED+G Y
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNV 261
Query: 192 KNELGESNATISLN 205
+ + ++N
Sbjct: 262 TESVNDHQDEKAIN 275
Score = 68.2 bits (166), Expect = 1e-13
Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 37/236 (15%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
+ + C +VW R + ++ T L L ++ D
Sbjct: 14 VSSTFVLTCS----GSAPVVWERMSQEPPQEMAKAQDGTFSSV------LTLTNLTGLDT 63
Query: 82 GLYKVKAKNKMGEV---AASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQA 138
G Y + G + + F + G P + + + CR+
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYI-FVPDPTVGFLPND-AEELFIFLTEITEITIPCRV-T 120
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGES 198
DP V ++ + D F I + Y E
Sbjct: 121 DPQLVVTL------HEKKGDVALPVPYDHQRGF-------SGIFEDRSYICKTTIGDREV 167
Query: 199 NATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
++ + + + V + V +Q ++ I + C ++G W
Sbjct: 168 DSDAYYVYRLQVSSINVS----VNAVQTVVRQGEN----ITLMCIVIGNEVVNFEW 215
Score = 53.2 bits (127), Expect = 2e-08
Identities = 10/94 (10%), Positives = 23/94 (24%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ + +G + C ++ N + W + V
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + D+G Y + + +N
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 76.5 bits (188), Expect = 5e-18
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Query: 93 GEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGV 151
G +S L P + + G++ +C I++ P P + WS
Sbjct: 1 GSSGSSGTLTV-------NGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN 53
Query: 152 QVKEDKRHKFSI--DKDGHSYFASLEIIDVTIED-AGKYKVTAKNELGESNATISLNFDS 208
++ ++++ ++L I ++ D Y TA N G I L
Sbjct: 54 VLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Query: 209 DDAPVPGEG 217
+ P G
Sbjct: 114 SEMSGPSSG 122
Score = 51.0 bits (122), Expect = 1e-08
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNK 66
P Q + G + +C + P PD I W E L T I T +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 67 YLVA-LELDDVIETD-AGLYKVKAKNKMGEVAASINL 101
+++ L + +++ D +Y A N G I L
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 75.8 bits (187), Expect = 5e-18
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+ ++G + + C+I+ T V W Q++ ++++ + +
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI- 59
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L + D+T D G Y+ N+ GE ++ L
Sbjct: 60 ---LYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 66.2 bits (162), Expect = 2e-14
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 11 FTQKPQLRQEDEGNRLIFECQLLCNPKP-DIVWFRGETQLSEDTRTVMKTTPIGTNKYLV 69
+ + +EG + + C++ + + W+ G QL + + +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----EDGVA 58
Query: 70 ALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + D+ + D G Y+ K N GE ++ L
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 81.0 bits (199), Expect = 7e-18
Identities = 25/252 (9%), Positives = 61/252 (24%), Gaps = 47/252 (18%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVA----------- 70
+G+ + C W + T
Sbjct: 8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 71 -LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKR 129
L + ++ D+ Y + +++ EV + T + Q G+
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQKEEVQLLV-----------FGLTANSDTHLLQ---GQS 113
Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
L +P+V + + + +L + + ++D+G +
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK--------------TLSVSQLELQDSGTWTC 159
Query: 190 TAKNELGESNATISLN---FDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
T + I + F + V + + V P+ + + +
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219
Query: 247 EPEP----TISW 254
T
Sbjct: 220 ASSSKSWITFDL 231
Score = 75.2 bits (184), Expect = 6e-16
Identities = 25/245 (10%), Positives = 60/245 (24%), Gaps = 51/245 (20%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
+G L + P + + + +T L + + D+
Sbjct: 110 QGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKT---------------LSVSQLELQDS 154
Query: 82 GLYKVKAKNKMGEVAASINLN--------FSREQIDGLAPTFLKKPSIRQEDDGKRLLFE 133
G + +V I++ + +G F + E
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214
Query: 134 CRIQADPAP----TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
+ + + T + V VK + +L +G +
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274
Query: 190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPE 249
+ + G+ + ++L V + + N + C + G
Sbjct: 275 ALEAKTGKLHQEVNLV---------------------VMRATQLQKN---LTCEVWGPTS 310
Query: 250 PTISW 254
P +
Sbjct: 311 PKLML 315
Score = 47.1 bits (111), Expect = 2e-06
Identities = 26/197 (13%), Positives = 57/197 (28%), Gaps = 36/197 (18%)
Query: 10 SFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL- 68
SF + + L ++ + + K I + ++S T +G L
Sbjct: 197 SFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLH 256
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
+ L +G + + K G++ +NL +
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL-------------------VVMRATQL 297
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+ C + +P ++ S E+K K S + + V +AG ++
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLK----LENKEAKVS---------KREKAVWVLNPEAGMWQ 344
Query: 189 VTAKNELGESNATISLN 205
+ + N
Sbjct: 345 CLLSD---SGQVLLESN 358
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 9e-18
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P L+ P+ + L +C+ DP P + W G +I + G
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPR-ATIQEQG---- 62
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L+I ++ I D G Y A + GE++ + L+
Sbjct: 63 -TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 64.0 bits (156), Expect = 2e-13
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQL-SEDTRTVMKTTPIGTNK 66
P Q P + + +C+ +P P I W + D R + GT
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--QEQGT-- 63
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L++ ++ +D G Y A + GE + S L+
Sbjct: 64 ----LQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 39.3 bits (92), Expect = 1e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 213 VPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G P+ + P + D +++C+ G+P P ISW
Sbjct: 2 SSGSSGPPIILQGPANQTLAVD-GTALLKCKATGDPLPVISW 42
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 75.0 bits (185), Expect = 1e-17
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
+K + G+ + C + P V W +++ +++ +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM--- 64
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L I +++DAG+Y + ++ +
Sbjct: 65 -LVIRGASLKDAGEYTCEVEASKSTASLHV 93
Score = 56.2 bits (136), Expect = 1e-10
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ + + + G + C+L P + W + + + + + +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVV-----CEGTM 62
Query: 69 VALELDDVIETDAGLYKVKAKNKMGE 94
L + DAG Y + +
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKST 88
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 78.8 bits (194), Expect = 1e-17
Identities = 37/248 (14%), Positives = 68/248 (27%), Gaps = 47/248 (18%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
T +P + + C++L P WF T T +
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------------ 49
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+ D+G Y+ + + I L R L + S R +G
Sbjct: 50 ---YRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHR-------GWLLLQVSSRVFTEG 97
Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ L C D V++ +G K + +L I+ I G
Sbjct: 98 EPLALRCHAWKDKLVYNVLYYRNGKAFK-------FFHWNS-----NLTILKTNISHNGT 145
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
Y + + ++A IS+ V PV + + + + + C
Sbjct: 146 YHCSGMGKHRYTSAGISVT-------VKELFPAPVLNASVTSPLLEGN--LVTLSCETKL 196
Query: 247 EPEPTISW 254
+
Sbjct: 197 LLQRPGLQ 204
Score = 65.3 bits (159), Expect = 8e-13
Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 35/194 (18%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPK-PDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ R EG L C + +++++R
Sbjct: 83 GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN-------SN--- 132
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + + G Y K +A I++ + L +G
Sbjct: 133 ---LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK----ELFPAPVLNASVTSPLLEG 185
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH-----SYFASLEIIDVTIE 182
+ C + + + FS + + +I+ E
Sbjct: 186 NLVTLSCETKLLLQRPGLQLY------------FSFYMGSKTLRGRNTSSEYQILTARRE 233
Query: 183 DAGKYKVTAKNELG 196
D+G Y A E G
Sbjct: 234 DSGLYWCEAATEDG 247
Score = 32.2 bits (73), Expect = 0.12
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ E F EGN + C+ + + ++T+
Sbjct: 165 VKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFY--MGSKTLRGRNTS 222
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEV 95
++ D+GLY +A + G V
Sbjct: 223 SE------YQILTARREDSGLYWCEAATEDGNV 249
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 74.7 bits (184), Expect = 2e-17
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 104 SREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSI 163
S + G ++ +G F CRI V W + ++ ++
Sbjct: 5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA 64
Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNE 194
G + L + + ++D+G A ++
Sbjct: 65 QPGG---YHVLTLRQLALKDSGTIYFEAGDQ 92
Score = 63.6 bits (155), Expect = 2e-13
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 3 IAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ + + + EG+ F C++ + WF +T L + + P
Sbjct: 8 LVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
G + L L + D+G +A G+ AS L + F +
Sbjct: 68 GYHV----LTLRQLALKDSGTIYFEA----GDQRASAALR-----VTEKPSVFSRSG 111
Score = 28.5 bits (64), Expect = 0.93
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 5/41 (12%)
Query: 216 EGTKPVFTERP--VTKQSDDDLNDIVIECRLVGEPEPTISW 254
+G + E V Q CR+ + W
Sbjct: 10 QGRRVHIIEDLEDVDVQEGSS---ATFRCRISPANYEPVHW 47
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 74.7 bits (183), Expect = 2e-17
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIW---SHSGVQVKEDKRHKF--SI 163
F+ +P + G + F R+ P V W + K + + S
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 164 DKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
D+ Y L I D G Y+ + + +L
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 69.3 bits (169), Expect = 2e-15
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGE----TQLSEDTRTVM 57
+D F +PQ + G + F ++ P + WF+G+ + +
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ + YL L + D G Y+ + K ++ NL
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 74.0 bits (182), Expect = 3e-17
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
L+ + ++ +F+C + +D T W +GV+V+ KR S H
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHK-- 64
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
L I DV ED G Y +A LNF P G
Sbjct: 65 --LVIDDVRPEDEGDYTFVPDGYALSLSAK--LNFLEIKVSGPSSG 106
Score = 57.8 bits (140), Expect = 3e-11
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
Q + +F+C++ + K W++ ++ R +
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISH-----VGR 61
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASIN 100
L +DDV D G Y ++A +N
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLN 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 73.2 bits (180), Expect = 4e-17
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G + + + G L CR++ D ++ W GVQ+ E R + + +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----- 54
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
+E+ D D+G Y + G S+N P G
Sbjct: 55 ---EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSSG 99
Score = 61.6 bits (150), Expect = 1e-12
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+ S + + G+ L C+L + I W R QL+E RT +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRL-RDDVQSINWLRDGVQLAESNRTRITGE------- 54
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+E+ D + D+GLY + G ++N
Sbjct: 55 --EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 77.9 bits (191), Expect = 5e-17
Identities = 39/262 (14%), Positives = 73/262 (27%), Gaps = 52/262 (19%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCN-PKPDIV---WFRGETQLSEDTRTVMKTTPIG 63
A + + + R G+ + + P P + W + + +T T
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT-------- 53
Query: 64 TNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
L + D +AG YKV ++ + + E + +P
Sbjct: 54 -------LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAE---LIVNITEPQHFY 103
Query: 124 EDDGKRLLFECRIQA--------DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLE 175
+ ++ + WS + +
Sbjct: 104 VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------------QDIT 148
Query: 176 IIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDL 235
I + T + G Y V E +S A+ S V + V + V ++ L
Sbjct: 149 IQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNV----DQDVVESKTVALGNEISL 204
Query: 236 NDIV---IECRLVGEPEPTISW 254
N +V I G P TI +
Sbjct: 205 NYVVSEDIVGDSSGMPNLTIKY 226
Score = 57.1 bits (137), Expect = 8e-10
Identities = 35/226 (15%), Positives = 62/226 (27%), Gaps = 58/226 (25%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIV-----WFRGETQLSEDTRTVMKTT 60
+PQ + + D W +GE +
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD------ 146
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPS 120
+ + + G+Y VK + + AAS + LA + +
Sbjct: 147 ----------ITIQEFTADKNGVYTVKVWGESEDSAASAST------KIMLATMNVDQDV 190
Query: 121 IRQE--DDGKRLLFECRIQAD--------PAPTVIWS------------HSGVQVKEDKR 158
+ + G + + D P T+ ++ G +V E
Sbjct: 191 VESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGE-AL 249
Query: 159 HKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
FSI DGH L T +D K+ AK + T+ +
Sbjct: 250 EGFSITPDGH-----LFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 47.5 bits (112), Expect = 1e-06
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 27/150 (18%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAP---TVIWSHSGVQVKEDKRHKFSIDKD 166
+A T + + R G + D P P T W+ + +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------- 51
Query: 167 GHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
A+L + D T E+AG YKVT ++ ++ + + E V P
Sbjct: 52 -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEV-------FLMEEAELIVNITEP 99
Query: 227 --VTKQSDDDLNDIVIECRLVGEPEPTISW 254
S D+ G+
Sbjct: 100 QHFYVSSQTDVELHATVKFSGGKTPADNYE 129
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 75.7 bits (185), Expect = 8e-17
Identities = 27/202 (13%), Positives = 52/202 (25%), Gaps = 44/202 (21%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
E ++ C +I WF+ + T K L +
Sbjct: 17 EDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKK------------WNLGSNAKDPR 61
Query: 82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDD--------------- 126
G+Y+ K + S + A + D
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121
Query: 127 ------GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
G ++ C P ++W H+ + D+ K + H L + + +
Sbjct: 122 YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFS 174
Query: 181 -IEDAGKYKVTAKNELGESNAT 201
+E +G Y + E
Sbjct: 175 ELEQSGYYVCYPRGSKPEDANF 196
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 74.9 bits (184), Expect = 8e-17
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 28/175 (16%)
Query: 35 NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYKVKAKN 90
+ DI W + + K T + Y + L++ + D +YKV +
Sbjct: 28 DDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD 87
Query: 91 KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG 150
G+ + +I + KP I C + P + G
Sbjct: 88 TKGKNVLEKIFDL---KI--QER--VSKPKISWT--CINTTLTCEVMNGTDPELNLYQDG 138
Query: 151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+K +R + T + K+K TA N++ + ++ ++
Sbjct: 139 KHLKLSQR---------------VITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 62.2 bits (151), Expect = 4e-12
Identities = 15/135 (11%), Positives = 46/135 (34%), Gaps = 21/135 (15%)
Query: 127 GKRLLFECRIQA--DPAPTVIWSHSG--VQVKEDKRHKFSIDKDGHSYF---ASLEIIDV 179
G+ + + D + W + ++ + ++ K + + +L+I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 180 TIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
+D YKV+ + G++ + + +KP + +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTC---------INTT 119
Query: 240 IECRLVGEPEPTISW 254
+ C ++ +P ++
Sbjct: 120 LTCEVMNGTDPELNL 134
Score = 39.9 bits (93), Expect = 3e-04
Identities = 10/89 (11%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
KP++ C+++ P++ ++ L R +
Sbjct: 108 KPKISWT--CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWT------------ 153
Query: 74 DDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ + +K A NK+ + ++ ++
Sbjct: 154 ----TSLSAKFKCTAGNKVSKESSVEPVS 178
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 75.5 bits (185), Expect = 1e-16
Identities = 27/200 (13%), Positives = 67/200 (33%), Gaps = 31/200 (15%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSED-------TRTVMKTTPIGTNKYLV----A 70
E N ++ L W++G T + + T + + ++ +
Sbjct: 13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS 72
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQED----D 126
L + D G+Y + ++ ++ + + +P ++ + +
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRR--------TQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ C + D + W + ++ +R S + L I + EDAG+
Sbjct: 125 LDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNS------ILRIDPIKREDAGE 177
Query: 187 YKVTAKNELGESNA-TISLN 205
Y+ N + + +I L+
Sbjct: 178 YQCEISNPVSVRRSNSIKLD 197
Score = 47.7 bits (113), Expect = 7e-07
Identities = 18/140 (12%), Positives = 32/140 (22%), Gaps = 22/140 (15%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD----GHSYF--------ASL 174
+L W + + +F + + G +Y SL
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
+T++D G Y + +E P +
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE--------- 124
Query: 235 LNDIVIECRLVGEPEPTISW 254
D V L + I W
Sbjct: 125 -LDSVTLTCLSNDIGANIQW 143
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 71.2 bits (175), Expect = 3e-16
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
A F ++ + Q ++ +F C+ PA TV W ++++ +H+ S +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTL--- 63
Query: 172 ASLEIIDVTIEDAGKYKVTAKNE 194
L I + D+ Y
Sbjct: 64 -RLTISALEKADSDTYTCDIGQA 85
Score = 59.3 bits (144), Expect = 7e-12
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
A FT++ Q +E +F C+ +P + W +G +L +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPS-----QEGL 61
Query: 68 LVALELDDVIETDAGLYKVKAKN 90
+ L + + + D+ Y
Sbjct: 62 TLRLTISALEKADSDTYTCDIGQ 84
Score = 26.9 bits (60), Expect = 3.1
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G FTE Q ++ V C+ P T++W
Sbjct: 4 GSSGANCFTEELTNLQVEEK-GTAVFTCK-TEHPAATVTW 41
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 73.5 bits (180), Expect = 4e-16
Identities = 21/189 (11%), Positives = 49/189 (25%), Gaps = 21/189 (11%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSED------TRTVMKTTPIGTNKYLVALELDD 75
G+ + EC ++ R Q E+ R + + K +
Sbjct: 16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGK--ALFHIPS 73
Query: 76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECR 135
V D+G Y+ + + + I + + C+
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMR-------IDTRILEVPGTGEVQLTCQ 126
Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
+ P V W + V +G S ++ + + + + N
Sbjct: 127 ARGYPLAEVSWQNVSVPANTS----HIRTPEGLYQVTS--VLRLKPQPSRNFSCMFWNAH 180
Query: 196 GESNATISL 204
+ + +
Sbjct: 181 MKELTSAII 189
Score = 65.4 bits (159), Expect = 4e-13
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 17/133 (12%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKF----SIDKDGHSYF-ASLEIIDVTI 181
G + EC + + +Q E+ ++ ++ A I V +
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
D+G+Y+ +++ + + E P T ++ +
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-----TRILEVPGT-------GEVQLT 124
Query: 242 CRLVGEPEPTISW 254
C+ G P +SW
Sbjct: 125 CQARGYPLAEVSW 137
Score = 33.5 bits (76), Expect = 0.036
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 15 PQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELD 74
++ + + CQ P ++ W + TP G Y V L
Sbjct: 110 TRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHI----RTPEGL--YQVTSVL- 162
Query: 75 DVIETDAGLYKVKAKNKMGEVAASINL 101
+ + + N + S +
Sbjct: 163 RLKPQPSRNFSCMFWNAHMKELTSAII 189
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 70.5 bits (173), Expect = 7e-16
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
F + ++ +G +C + V W +++ R+ D
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRC--- 62
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L+I D+++ DAG+Y E + T+
Sbjct: 63 -ELQIHDLSVADAGEYSCMCGQERTSATLTV 92
Score = 60.1 bits (146), Expect = 4e-12
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
FTQ + ++ EG +C+L + + W +G L + R +K +
Sbjct: 8 PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLK-----QDGT 60
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKP 119
L++ D+ DAG Y G+ S L + L F +
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLT-----VRALPARFTEGS 103
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 70.5 bits (173), Expect = 7e-16
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRI-QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
K+ + +G+ FEC + + +W+ G V R + + +
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY--- 65
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L + + DAG+ + + +++ +
Sbjct: 66 -ILVVREAAPSDAGEVVFSVRGLTSKASLIV 95
Score = 56.2 bits (136), Expect = 1e-10
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 6/87 (6%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
T++ + + EG FEC L + +W G + +R
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGR 63
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGE 94
L + + +DAG + +
Sbjct: 64 KYILVVREAAPSDAGEVVFSVRGLTSK 90
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 70.5 bits (173), Expect = 8e-16
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 108 IDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDG 167
+ L F + + +G + C + V W +++ RH D
Sbjct: 15 VRALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLRQDGAR 72
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
L+I + EDAG+Y E ++A ++
Sbjct: 73 C----ELQIRGLVAEDAGEYLCMCGKE--RTSAMLT 102
Score = 55.1 bits (133), Expect = 3e-10
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
FT+ + + EG + C+L + + W++G L + R ++
Sbjct: 16 RALPIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHETLRDGDRHSLR-----Q 68
Query: 65 NKYLVALELDDVIETDAGLYKVKAKN 90
+ L++ ++ DAG Y
Sbjct: 69 DGARCELQIRGLVAEDAGEYLCMCGK 94
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 72.9 bits (178), Expect = 8e-16
Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 20/209 (9%)
Query: 7 FAPSFTQKPQLRQ--EDEGNRLIFECQLLCNPKPDIVWFR--GETQLSEDTRTVMKTTPI 62
F S + + + E++ ++ C ++ E + D + +
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKK 64
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
G + + + AG+ +AK + + + + L
Sbjct: 65 G-------FTIPSYMISYAGMVFCEAKINDESYQSIMYI--VVVVGYRIYDVVLSPSHGI 115
Query: 123 QEDDGKRLLFECRIQADPAPTV--IWSHSGVQVKEDK----RHKFSIDKDGHSYFASLEI 176
+ G++L+ C + + + W + + + K K + + ++L I
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175
Query: 177 IDVTIEDAGKYKVTAKNELGESNATISLN 205
VT D G Y A + L + +
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 40.9 bits (95), Expect = 1e-04
Identities = 20/148 (13%), Positives = 35/148 (23%), Gaps = 22/148 (14%)
Query: 115 FLKKPSIRQED------DGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
F+ S + K ++ C + V +F D +
Sbjct: 6 FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLC------ARYPEKRFVPDGNRI 58
Query: 169 SYF--ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERP 226
S+ I I AG AK + + + + E
Sbjct: 59 SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 118
Query: 227 VTKQSDDDLNDIVIECRLVGEPEPTISW 254
V +V+ C E I +
Sbjct: 119 VG-------EKLVLNCTARTELNVGIDF 139
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 75.3 bits (185), Expect = 9e-16
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 106 EQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDK 165
P F+ KP + +G+ F CR+ A P V W ++K+ ++ +
Sbjct: 476 WDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG 535
Query: 166 DGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ L I V +D G+Y V AKN G + LN
Sbjct: 536 N----DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 63.7 bits (155), Expect = 8e-12
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
+ P F KP + EG F C+++ + P + W + + +L + + + +
Sbjct: 479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG--- 535
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
N Y L ++ V D G Y V+AKN G + LN
Sbjct: 536 NDY--GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 28.3 bits (63), Expect = 2.6
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 1/61 (1%)
Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTIS 253
+ DA +P F +P + + CR++ P ++
Sbjct: 457 NYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEG-QSANFYCRVIASSPPVVT 515
Query: 254 W 254
W
Sbjct: 516 W 516
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 70.1 bits (172), Expect = 9e-16
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
L + + + GK + +C I + W+ +G+ V+E R K H
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHK-- 62
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPG 215
L I + ED G Y A + + P G
Sbjct: 63 --LVIANALTEDEGDYVFAPDAYNVTLPAKVHV----ISGPSSG 100
Score = 52.7 bits (127), Expect = 2e-09
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G + + + G + +C++ N W + + E R +
Sbjct: 1 GSSGSSGLKILTPLTDQTVNLGKEICLKCEISENIPG--KWTKNGLPVQESDRLKVV--- 55
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINL 101
+ L + + + D G Y + A +++
Sbjct: 56 --QKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV 93
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 69.7 bits (171), Expect = 1e-15
Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
F + + +G C + + AP V W + ++ ++ +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE-- 64
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
L + ++ +D+G+Y + ++ ++AT++
Sbjct: 65 --LVVRNLRPQDSGRYSCSFGDQ--TTSATLT 92
Score = 52.3 bits (126), Expect = 3e-09
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
F + + + EG C L P + W G L + ++
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLR-----QEGA 61
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
++ L + ++ D+G Y G+ S L
Sbjct: 62 MLELVVRNLRPQDSGRYSCSF----GDQTTSATLT 92
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 74.5 bits (182), Expect = 2e-15
Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 34/198 (17%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P+ + EG + +C+ +P+ + + P+G
Sbjct: 283 FPAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNG------------VPAQPLGPR-- 326
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L L E + + A ++ N + G P +
Sbjct: 327 -AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPEN 385
Query: 128 KRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ C+ +P P + KDG E + VT + G Y
Sbjct: 386 SQQTPMCQAWGNPLPELKCL-----------------KDGTFPLPIGESVTVTRDLEGTY 428
Query: 188 KVTAKNELGESNATISLN 205
A++ GE +++N
Sbjct: 429 LCRARSTQGEVTREVTVN 446
Score = 59.9 bits (144), Expect = 1e-10
Identities = 29/254 (11%), Positives = 61/254 (24%), Gaps = 40/254 (15%)
Query: 6 DFAPSFTQKPQLRQEDEGNRLIFECQLLCN---PKPDIVWFRGETQLSEDTRTVMKTTPI 62
+ Q R + + C L + + G+ +L+ +
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS- 244
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
A V D G ++ +G + + P +
Sbjct: 245 -------AKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS----FPAPNVILTKP 293
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
+ +G + +C +A P V + Q + L + +
Sbjct: 294 EVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ--------------LLLKATPED 337
Query: 183 DAGKYKVTAKNELGESN--ATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
+ + +A E+ + P E P T +
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP----GNWTWPENSQQ---TP 390
Query: 241 ECRLVGEPEPTISW 254
C+ G P P +
Sbjct: 391 MCQAWGNPLPELKC 404
Score = 59.5 bits (143), Expect = 2e-10
Identities = 31/240 (12%), Positives = 63/240 (26%), Gaps = 34/240 (14%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDA 81
G ++ C C+ + ET L K + EL +V +
Sbjct: 13 RGGSVLVTCSTSCDQPMLLGI---ETPLP-------KKELLLPGNNRKVYELSNV--QED 60
Query: 82 GLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLK-KPSIRQEDDGKRLLFECRIQA-- 138
+ G+ A L P ++ P + GK L C+++
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYW------TPERVELAPLPSWQPVGKNLTLRCQVEGGA 114
Query: 139 -DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
TV+ ++K G + ++ + + +L
Sbjct: 115 PRANLTVVLLRGEKELK-------REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167
Query: 198 SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE---PEPTISW 254
+ N + P + V+ + + + C L G E +
Sbjct: 168 QGLELFEN--TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 68.6 bits (168), Expect = 3e-15
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
F K Q D G R+ F + ADP V W +G +++ ++ F
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR-- 63
Query: 171 FASLEIIDVTIEDAGKYKVTAKNE 194
L I + + D +Y VTA +E
Sbjct: 64 --ILFINNCQMTDDSEYYVTAGDE 85
Score = 58.9 bits (143), Expect = 1e-11
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 2 GIAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTT 60
G + +F + + D+G R+ F +L +PK ++ W++ ++ T+ + +
Sbjct: 1 GSSGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFE-- 57
Query: 61 PIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L +++ TD Y V A G+ S L
Sbjct: 58 ---HKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92
Score = 27.0 bits (60), Expect = 2.6
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 216 EGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ F + D + + +P+ + W
Sbjct: 4 GSSGAAFAKILDPAYQVDKGGRVRFVVE-LADPKLEVKW 41
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 73.2 bits (179), Expect = 3e-15
Identities = 27/192 (14%), Positives = 48/192 (25%), Gaps = 21/192 (10%)
Query: 17 LRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDD 75
++ + L+ C P + W +E P GT + L
Sbjct: 144 AKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI---RNPNGTVTVISRYRLVP 200
Query: 76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF-LKKPSIRQEDDGKRLLFEC 134
E M S+ LN P ++ + C
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQ------YEPEVTIEGFDGNWYLQRMDVKLTC 254
Query: 135 RIQADPAPTVI-WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKN 193
+ A+P T W+ + + + AG Y A N
Sbjct: 255 KADANPPATEYHWTTLNGSLPKGVEA---------QNRTLFFKGPINYSLAGTYICEATN 305
Query: 194 ELGESNATISLN 205
+G + + +N
Sbjct: 306 PIGTRSGQVEVN 317
Score = 43.6 bits (102), Expect = 3e-05
Identities = 22/149 (14%), Positives = 43/149 (28%), Gaps = 28/149 (18%)
Query: 127 GKRLLFECRIQADPAP----TVIW---------------SHSGVQVKEDKRHKFSIDKDG 167
G ++ C V W GV V R + +
Sbjct: 29 GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS 88
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESN-ATISLNFDSDDAPVPGEGTKPVFTERP 226
+ ++ + + +ED G Y + + ++L P + T+
Sbjct: 89 FT-DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT----VMAKPTNWIEG--TQAV 141
Query: 227 VTKQSDDDLNDIVIECRLV-GEPEPTISW 254
+ + D +V C G+P +SW
Sbjct: 142 LRAKKGQDDKVLVATCTSANGKPPSVVSW 170
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 69.6 bits (170), Expect = 6e-15
Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 30/175 (17%)
Query: 35 NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV----ALELDDVIETDAGLYKVKAKN 90
+ ++ W RG T ++E R + + + + L++ ++ D+G Y V +
Sbjct: 25 DDIDEVRWERGSTLVAEFKRKMKPFLK--SGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82
Query: 91 KMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSG 150
G + L+ ++ + KP I E L C + +
Sbjct: 83 TNGTRILNKALDLRILEM-------VSKPMIYWECSNATL--TCEVLEGTDVELKLYQGK 133
Query: 151 VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
++ ++ S +K A N + + + +N
Sbjct: 134 EHLRSLRQKTMSYQWT---------------NLRAPFKCKAVNRVSQESEMEVVN 173
Score = 63.8 bits (155), Expect = 1e-12
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 127 GKRLLFECRIQ--ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTI 181
G + D V W V E KR K G L+I ++T
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIE 241
+D+G Y VT + G +L+ V KP+ ++ +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDL-RILEMVS----KPMIYWEC---------SNATLT 116
Query: 242 CRLVGEPEPTISW 254
C ++ + +
Sbjct: 117 CEVLEGTDVELKL 129
Score = 32.2 bits (73), Expect = 0.089
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 13 QKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALE 72
KP + E + C++L ++ ++G+ L + M
Sbjct: 102 SKPMIYWE--CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW----------- 148
Query: 73 LDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+K KA N++ + + +N
Sbjct: 149 -----TNLRAPFKCKAVNRVSQESEMEVVN 173
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 67.8 bits (166), Expect = 7e-15
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 112 APTFLKK-PSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+ F KK Q G ++ + AD V W +G +++ K+ + G
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGS-KYIFESIGAKR 72
Query: 171 FASLEIIDVTIEDAGKYKVTAKNE 194
+L I ++ D Y+ E
Sbjct: 73 --TLTISQCSLADDAAYQCVVGGE 94
Score = 54.3 bits (131), Expect = 5e-10
Identities = 9/93 (9%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 3 IAEDFAPSFTQKPQLRQE-DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
+ E + +F +K + + +G+++ +L + ++ W + ++ +
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYI---- 64
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
+ L + D Y+ +
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGEKCS 97
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 67.7 bits (166), Expect = 7e-15
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
K+ G+R+ EC + ++ V W +G ++ + ++ I +G +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH- 64
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L I T DA +Y V + ++
Sbjct: 65 -ILIIEGATKADAAEYSVMTTGGQSSAKLSV 94
Score = 52.3 bits (126), Expect = 3e-09
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 2 GIAEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP 61
G + T++ + G R+ EC++ ++ WF+ ++ ++ +
Sbjct: 1 GSSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV 59
Query: 62 IGTNKYLVALELDDVIETDAGLYKVKAKN 90
G L+ ++ + DA Y V
Sbjct: 60 EGKKHILI---IEGATKADAAEYSVMTTG 85
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 67.3 bits (165), Expect = 7e-15
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
K + G+ FE + ++P W G + + D H
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKH---- 60
Query: 173 SLEIIDVTIEDAGKYKVTAKNE 194
L + + + G+ A N
Sbjct: 61 ILILHNCQLGMTGEVSFQAANT 82
Score = 55.0 bits (133), Expect = 2e-10
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 6/82 (7%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ + G FE +L P W L+ + +
Sbjct: 6 IEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKK 59
Query: 69 VALELDDVIETDAGLYKVKAKN 90
L L + G +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 66.6 bits (163), Expect = 1e-14
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
F KKP + G +FE V W G + ++ + + H
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRH---- 63
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L + +V D G Y V A G S L
Sbjct: 64 TLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 53.9 bits (130), Expect = 7e-10
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+F++KP+ + G+ +FE + + W RG + +S + + T
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQRGGSDISASNKYGLA-----TEGTR 62
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + +V D G Y V A G +L
Sbjct: 63 HTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
Score = 30.8 bits (70), Expect = 0.11
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 212 PVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
P PG+ F+++P + + + V E + W
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAG-SPAVFEAE-TERAGVKVRW 41
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 66.6 bits (163), Expect = 2e-14
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH--KFSIDKDGHSY 170
+ +Q G R+ + ++ V+W +GV++ + ++ KDG +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L DV ED G+Y+V G+ A +
Sbjct: 68 --ILIFSDVVQEDRGRYQVITNG--GQCEAEL 95
Score = 54.6 bits (132), Expect = 4e-10
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ +Q G+R+ ++ ++W + +L+ + + +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYR-FKKDGKR 66
Query: 69 VALELDDVIETDAGLYKVKAKNK 91
L DV++ D G Y+V
Sbjct: 67 HILIFSDVVQEDRGRYQVITNGG 89
Score = 25.8 bits (57), Expect = 7.0
Identities = 5/40 (12%), Positives = 11/40 (27%), Gaps = 2/40 (5%)
Query: 215 GEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G + +Q + + + V E + W
Sbjct: 4 GSSGPVLIVTPLEDQQVFVG-DRVEMAVE-VSEEGAQVMW 41
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 65.9 bits (161), Expect = 3e-14
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
F K+ +E + G C + A V W G ++ + +
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
L + +AG+Y A + +
Sbjct: 67 ----RLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
Score = 51.3 bits (123), Expect = 6e-09
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ Q + G C++ + ++ W++ +LS ++ ++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVE-----AVGCT 65
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + + +AG Y +A G S L
Sbjct: 66 RRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQ 95
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 65.9 bits (161), Expect = 3e-14
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
+++ PS + +R++ C + P V W+ G +V E +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNE 194
L + V +ED+G+Y +E
Sbjct: 69 ----RLVLPAVQLEDSGEYLCEIDDE 90
Score = 52.5 bits (126), Expect = 3e-09
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 8 APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
S+ P + R++ C+L C P ++ W + ++ E +++
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQ-----K 63
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ L L V D+G Y + + +AS +
Sbjct: 64 EDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVT 97
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 65.2 bits (159), Expect = 4e-14
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
+ G L CR++ D ++ W GVQ+ E R + + +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGE-------- 60
Query: 173 SLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+E+ D D+G Y + G S+N
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 59.0 bits (143), Expect = 8e-12
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+ + G+ L C+L + I W R QL E RT +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLRDGVQLVESNRTRITGE-------- 60
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+E+ D I D+GLY + G ++N
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 29.8 bits (67), Expect = 0.23
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 218 TKPVFTERPVTKQSDDDL-----NDIVIECRLVGEPEPTISW 254
T P + + L + + + CR + + +I+W
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCR-LRDDVQSINW 42
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 67.2 bits (164), Expect = 4e-14
Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 39/200 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+P + + + CQ +P+ D I WF + T+
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------------ 52
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
D+G Y + ++ ++L E L+ P + + +G
Sbjct: 53 ---SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE------WLVLQTPHL-EFQEG 100
Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ ++ C D P V + +G K + I +G
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD------------PTFSIPQANHSHSGD 148
Query: 187 YKVTAKNELG-ESNATISLN 205
Y T S+ +++
Sbjct: 149 YHCTGNIGYTLFSSKPVTIT 168
Score = 43.7 bits (103), Expect = 1e-05
Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 30/130 (23%)
Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ C+ P ++ W H+G + + D+G
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------------PSYRFKANNNDSG 64
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV 245
+Y +++ F+ + + F E I++ C
Sbjct: 65 EYTCQTGQTSLSDPVHLTVLFE----WLVLQTPHLEFQEG----------ETIMLRCHSW 110
Query: 246 -GEPEPTISW 254
+P +++
Sbjct: 111 KDKPLVKVTF 120
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 67.8 bits (165), Expect = 1e-13
Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 40/201 (19%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P+ + EG + +C+ +P+ + Q
Sbjct: 98 FPAPNVILTKPEVSEGTEVTVKCE--AHPRAKVTLNGVPAQPLGPRAQ------------ 143
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAP---TFLKKPSIRQE 124
L L E + + A ++ N ++ L P
Sbjct: 144 ---LLLKATPEDNGRSFSCSATLEVAGQLIHKN---QTRELRVLYGPRLDERDCPGNWTW 197
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
+ + C+ +P P + KDG E + VT +
Sbjct: 198 PENSQQTPMCQAWGNPLPELKCL-----------------KDGTFPLPIGESVTVTRDLE 240
Query: 185 GKYKVTAKNELGESNATISLN 205
G Y A++ GE +++N
Sbjct: 241 GTYLCRARSTQGEVTREVTVN 261
Score = 48.5 bits (115), Expect = 5e-07
Identities = 36/255 (14%), Positives = 64/255 (25%), Gaps = 49/255 (19%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLL-CNPKPD--IVWFRGETQLSEDTRTVMKTTPIGT 64
P L + C L P + + G+ +L+ + +
Sbjct: 6 PPQLVSPRVLE---VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF---S 59
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQE 124
K V++ +D + AP + E
Sbjct: 60 AKASVSVTAED---EGTQRLTCAVILGNQSQETLQTVTIYSFP----APNVILTKPEVSE 112
Query: 125 DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDA 184
G + +C +A P V + Q + + ++ T ED
Sbjct: 113 --GTEVTVKC--EAHPRAKVTLNGVPAQPLGPR---------------AQLLLKATPEDN 153
Query: 185 GK-YKVTAKNELG----ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIV 239
G+ + +A E+ N T L P E P T +
Sbjct: 154 GRSFSCSATLEVAGQLIHKNQTREL--RVLYGPRLDERDCP----GNWTWPENSQQ---T 204
Query: 240 IECRLVGEPEPTISW 254
C+ G P P +
Sbjct: 205 PMCQAWGNPLPELKC 219
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 64.3 bits (157), Expect = 1e-13
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 112 APTFLKKPSIRQE---DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGH 168
P + P + +R++ C + + W G +V+E + +D H
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGESNATIS 203
L + + ++D+G+++ + + ++
Sbjct: 66 ----RLILPEAKVQDSGEFECRTEGV--SAFFGVT 94
Score = 51.2 bits (123), Expect = 7e-09
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 8 APSFTQKPQLRQE---DEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
P PQ + R++ C+L W++ ++ E V+K
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM----- 60
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ L L + D+G ++ + V+A +
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGVT 94
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 67.6 bits (164), Expect = 2e-13
Identities = 39/261 (14%), Positives = 71/261 (27%), Gaps = 50/261 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLC---NPKPDIVWFRGETQLSEDTRTVMK----TTP 61
P T + G ++ C + + W + + + + P
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 62 IGTNKYLVA-----------LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG 110
G + L L DV + D G+Y + + K + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW------ 119
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADPAP---TVIWSHSGVQVKEDK---------- 157
++P + G C IQ+ V W S E++
Sbjct: 120 ---VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 158 ----------RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFD 207
R++ + D S+++ V D G Y + ES TI L+
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236
Query: 208 SDDAPVPGEGTKPVFTERPVT 228
D+ T P +
Sbjct: 237 QDEFQRTISPTPPTDKGQQGI 257
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 63.6 bits (155), Expect = 2e-13
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
+ +P G + C + A P+P + W GV +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------------ 57
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L + ++ +D G Y A + + +++
Sbjct: 58 -VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 58.2 bits (141), Expect = 2e-11
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKY 67
+P+ G + C++ P P I W + L V
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV----------- 58
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L L ++ D G Y A + S ++
Sbjct: 59 ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 32.0 bits (73), Expect = 0.037
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ P + + C + +P P I W
Sbjct: 10 EVQLVVEPEGGAVAPG-GTVTLTCEVPAQPSPQIHW 44
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 65.7 bits (160), Expect = 2e-13
Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 38/191 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
+PQ E + + +CQ +P+ + WF E+ +S +
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------------ 55
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+D D+G Y+ + ++ + L L+ P +
Sbjct: 56 ---YFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHI------GWLLLQAPR-WVFKEE 103
Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ C + V + +G K + + I T++D+G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKDRK------------YFHHNSDFHIPKATLKDSGS 151
Query: 187 YKVTAKNELGE 197
Y
Sbjct: 152 YFCRGLVGSKN 162
Score = 39.5 bits (92), Expect = 3e-04
Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 30/130 (23%)
Query: 127 GKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ +C+ P + W H+ + S I T+ D+G
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS--------------SYFIDAATVNDSG 67
Query: 186 KYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-L 244
+Y+ + ++ P E P+ + C
Sbjct: 68 EYRCQTNLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIH-----------LRCHSW 113
Query: 245 VGEPEPTISW 254
+++
Sbjct: 114 KNTALHKVTY 123
Score = 28.7 bits (64), Expect = 1.3
Identities = 9/90 (10%), Positives = 18/90 (20%), Gaps = 15/90 (16%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTN 65
Q P+ E + + C N + + +
Sbjct: 88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD-------- 138
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEV 95
+ D+G Y + V
Sbjct: 139 -----FHIPKATLKDSGSYFCRGLVGSKNV 163
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 65.3 bits (159), Expect = 2e-13
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 39/200 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPIGTNKY 67
P + P + +G + C + WF + E +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------------ 52
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
L + + D+G YK + + + + L + S +G
Sbjct: 53 ---LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS---------DWLLLQASAEVVMEG 100
Query: 128 KRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ L C + VI+ G +K + ++ I + T+ED+G
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEALKYWYEN------------HNISITNATVEDSGT 148
Query: 187 YKVTAKNELGESN-ATISLN 205
Y T K + +++
Sbjct: 149 YYCTGKVWQLDYESEPLNIT 168
Score = 39.9 bits (93), Expect = 2e-04
Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 30/144 (20%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYF 171
P P + G+ + C + W H+G +E
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS------------- 51
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQS 231
SL I++ ED+G+YK + + + D E V +P+
Sbjct: 52 -SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAE---VVMEGQPLF--- 104
Query: 232 DDDLNDIVIECR-LVGEPEPTISW 254
+ C + +
Sbjct: 105 --------LRCHGWRNWDVYKVIY 120
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 63.2 bits (153), Expect = 7e-13
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 34/126 (26%)
Query: 112 APTFLKKPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKE----------- 155
P R D G +L + I DPAPTVIW + Q +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 156 ----------------DKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
+ + ++ + + ED G Y VT KN +GE
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTK--DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 200 ATISLN 205
+++
Sbjct: 131 VNLTVK 136
Score = 48.2 bits (114), Expect = 2e-07
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP-------------------- 61
GN+L + + +P P ++W + TQ ++ P
Sbjct: 32 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 62 ----IGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
+ T K ++ + D G+Y V KN +GE ++ +
Sbjct: 92 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 28.6 bits (63), Expect = 1.0
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 236 NDIVIECRLVGEPEPTISW 254
N + ++ + G+P PT+ W
Sbjct: 34 NKLRLDVPISGDPAPTVIW 52
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 63.7 bits (155), Expect = 1e-12
Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 38/191 (19%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIV-WFRGETQLSEDTRTVMKTTPIGTNKY 67
+PQ + E + + +CQ +P+ WF E+ +S +
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------------ 55
Query: 68 LVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDG 127
+D D+G Y+ + + ++ + L L+ P +
Sbjct: 56 ---YFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI------GWLLLQAPR-WVFKEE 103
Query: 128 KRLLFECRIQADPAP-TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
+ C + A V + +G K + + I T++D+G
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNGKGRK------------YFHHNSDFYIPKATLKDSGS 151
Query: 187 YKVTAKNELGE 197
Y
Sbjct: 152 YFCRGLVGSKN 162
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 65.2 bits (159), Expect = 2e-12
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 118 KPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEII 177
K S + G L C + V S S QV + ++G L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNG-----DLFFK 306
Query: 178 DVTIEDAGKYKVTAKNELGESNATISLN 205
V +ED G Y A E ++ L
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELK 334
Score = 51.8 bits (124), Expect = 5e-08
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 6/102 (5%)
Query: 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
K + G+ L C + Q+ + G L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD------LFF 305
Query: 74 DDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTF 115
V D G+Y A + S+ L + G T
Sbjct: 306 KKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTL 347
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 60.4 bits (147), Expect = 3e-12
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
+P ++ G+ L+ +C + +P P WF+ E L+ +T+ +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------------ 51
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAAS 98
+ V G Y N +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 58.1 bits (141), Expect = 2e-11
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 13/92 (14%)
Query: 110 GLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
G +P+ ++ G L+ +C P P W + + + + +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------- 50
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
+ V +E G Y N+ ++
Sbjct: 51 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
Score = 33.1 bits (76), Expect = 0.017
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 217 GTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
G+K P +++ + +V++C VG P P W
Sbjct: 1 GSKLQICVEPTSQKLMPG-STLVLQCVAVGSPIPHYQW 37
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 59.8 bits (145), Expect = 5e-12
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQA-DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
+++ + G + F C ++ PA T++W+ + ++D +G
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNG--- 62
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
L I +V DAG Y T N T +L+
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 50.6 bits (121), Expect = 1e-08
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 9 PSFTQKPQLRQE-DEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
T + Q Q G + F C +P +VW R
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI------ 63
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
L + +V +DAG Y N + L+
Sbjct: 64 ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 30.9 bits (70), Expect = 0.10
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 211 APVPGEGTKPVFTERPVTKQSDDDLNDIVIECR-LVGEPEPTISW 254
AP+ + T QS D+ C P T+ W
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVW 45
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 62.1 bits (150), Expect = 6e-12
Identities = 22/183 (12%), Positives = 50/183 (27%), Gaps = 19/183 (10%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRG-ETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
G+ + C P W ++ L+ T+ L ++ V +
Sbjct: 15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS---------TLTMNPVSFGN 65
Query: 81 AGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD- 139
Y A + ++ I + D P + GK + +C +
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIYSFPKD---PEIHLSGPLEA---GKPITVKCSVADVY 119
Query: 140 --PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE 197
+ +K + + + K + + V + AK + E
Sbjct: 120 PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 198 SNA 200
++
Sbjct: 180 MDS 182
Score = 52.9 bits (126), Expect = 1e-08
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGK 186
G + C +P W + + ++ S +L + V+ +
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQI----DSPLNGKVTNEGTTS---TLTMNPVSFGNEHS 68
Query: 187 YKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG 246
Y TA E + I + S + P+ +P+T ++C +
Sbjct: 69 YLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPIT-----------VKCSVAD 117
Query: 247 ---EPEPTISW 254
I
Sbjct: 118 VYPFDRLEIDL 128
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 60.2 bits (146), Expect = 6e-12
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDK---RHKFSIDKDGH 168
P ++ PS G+ C+ + P PT+ W G +V+ DK R + G
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 169 SYFASLEIIDVTIEDAGKYKVTAKNELGES---NATISLN 205
+F + + D G Y A+N LGE+ +A++ +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
Score = 59.4 bits (144), Expect = 9e-12
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 5 EDFAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGT 64
EDF P + P +G C+ P P I W++G ++ D +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 65 NKYLVALELDD--VIETDAGLYKVKAKNKMGE-VAASINLNF 103
+ L L + D G+Y A+N +GE V+ +L
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 36.3 bits (84), Expect = 0.002
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 216 EGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
E P E P + C+ G P PTI W
Sbjct: 6 EDFPPRIVEHPSDLIVSKG-EPATLNCKAEGRPTPTIEW 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 62.8 bits (153), Expect = 1e-11
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQV--KEDKRHKFSIDKDGHS 169
AP + P +G+ +CR P +V W V + + S+ DG
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
+L V + D G Y N G SNA+ LN +
Sbjct: 408 ---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
Score = 51.3 bits (123), Expect = 1e-07
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 5 EDF---APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF----RGETQLSEDTRTVM 57
F AP P+ EG +C+ P + W + S R +
Sbjct: 346 ASFQCSAPFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISV 403
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
GT L V+ +D G+Y N G AS LN
Sbjct: 404 LND--GT------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 62.0 bits (151), Expect = 3e-11
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 125 DDGKRLLFECRIQADPAPTVIWSH-SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIED 183
D+G + F CR DP P ++W V + ++ DG +LE+ ++D
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-----TLEVRYAQVQD 452
Query: 184 AGKYKVTAKNELGESNATISLN 205
G Y A N G + L+
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLH 474
Score = 49.3 bits (118), Expect = 4e-07
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 5 EDF----APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR-GETQLSEDTRTVMKT 59
F A +K Q DEG+ + F C+ +P P I+W + +S + +
Sbjct: 378 NYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV 437
Query: 60 TPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
P GT LE+ D G Y A N G + +L+
Sbjct: 438 FPDGT------LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 30.8 bits (70), Expect = 0.37
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 219 KPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
+ +R + D+ + + CR G+P P I W
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILW 419
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 56.2 bits (135), Expect = 1e-10
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 109 DGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAP--TVIWSHSGVQVKEDKRHKFSIDKD 166
D P +P + G + F C + T W +++ + ++ +
Sbjct: 7 DFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRA 66
Query: 167 GHS----YFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
Y L + +V G Y+ N G S +
Sbjct: 67 QGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 53.5 bits (128), Expect = 1e-09
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 5 EDFA-PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDI--VWFRGETQLSEDT---RTVMK 58
+DF P T +P+ + G+ + F C + + W L + ++
Sbjct: 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 59 TTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAAS 98
+Y L L +V T G Y+ N G +
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 28.5 bits (63), Expect = 1.0
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 206 FDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
F DD P P T +P T+ + +D+ C + +++
Sbjct: 3 FVCDDFPXP------QITVQPETQSAIXG-SDVSFTCSAASSSDSPMTF 44
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.3 bits (135), Expect = 2e-10
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 127 GKRLLFECRIQADPAPTV--IWSHSGVQVKEDKRHKFSIDKDGHSYF----ASLEIIDVT 180
G++L+ C + + + W + + + K + S ++L I VT
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 181 IEDAGKYKVTAKNELGESNATISLN 205
D G Y A + L + +
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 45.1 bits (106), Expect = 1e-06
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 22 EGNRLIFECQLLCNPKPDIVW---FRGETQLSEDTRTVMKTTPIGTNKYLVA--LELDDV 76
G +L+ C I + + + T G+ L +D V
Sbjct: 22 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 81
Query: 77 IETDAGLYKVKAKNKMGEVAASINLN 102
+D GLY A + + S +
Sbjct: 82 TRSDQGLYTCAASSGLMTKKNSTFVR 107
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.0 bits (134), Expect = 2e-10
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 4 AEDFAPSFTQKPQLRQEDEGNRLIFECQLLCNP---KPDIVWFRGE----TQLSEDTRTV 56
AE+ F +KP + G + ++ KP I WF+G+ S +
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 57 MKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLN 102
++ +N Y V L + V+ D G Y+++ K K + N++
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
Score = 54.4 bits (130), Expect = 6e-10
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 111 LAPTFLKKPSIRQEDDGKRLLFECRIQADP---APTVIW---SHSGVQVKEDKRHKF--S 162
FLKKP + GK + ++ PT+ W + K R F S
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKES 70
Query: 163 IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ + Y L I V + D G Y++ K + + +++
Sbjct: 71 HNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 59.4 bits (144), Expect = 2e-10
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 113 PTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSH-SGVQVKED-KRHKFSIDKDGHSY 170
P ++ P+ +G +CR + +V W +G + + + ++ DG
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--- 397
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+L +VT++D G Y N +G + A+ +LN
Sbjct: 398 --TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLN 430
Score = 47.4 bits (113), Expect = 2e-06
Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 21/119 (17%)
Query: 5 EDFA---PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWF----RGETQLSEDTRTVM 57
F P + P EG +C+ + W T + R +
Sbjct: 335 NYFTCYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAV 393
Query: 58 KTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFL 116
+ GT L +V D G+Y N +G AS LN + G
Sbjct: 394 LSD--GT------LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-----VTGTHHHHH 439
Score = 26.6 bits (59), Expect = 8.0
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 218 TKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
PV E P + ++CR ++SW
Sbjct: 340 YAPVIVEPPADLNVTEG-MAAELKCR-ASTSLTSVSW 374
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 57.5 bits (138), Expect = 1e-09
Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 18/185 (9%)
Query: 30 CQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89
++ P + +W R + + N Y V E+ + G
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEV--ITSGHQGYL----- 150
Query: 90 NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS 149
A + + + + G+ F+C
Sbjct: 151 -------AIDEVKVLGHPCT--RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQ 201
Query: 150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSD 209
G+ V++ + + AS +++ T DAGKY+ + E G + +
Sbjct: 202 GIDVRDAPLKEIKVTSSRRFI-ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV-VK 259
Query: 210 DAPVP 214
+ PVP
Sbjct: 260 EPPVP 264
Score = 39.0 bits (90), Expect = 0.001
Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 2/117 (1%)
Query: 7 FAPSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK 66
+ Q + + G F+C + + + + +K T + +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS--SRR 220
Query: 67 YLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQ 123
++ + + + + DAG Y+ + + G ++ +E +AP L
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATY 277
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 55.0 bits (132), Expect = 3e-09
Identities = 35/202 (17%), Positives = 60/202 (29%), Gaps = 30/202 (14%)
Query: 23 GNRLIFECQLLCNPKPD---IVWFR------------GETQLSEDT-----RTVMKTTPI 62
G+ + EC+ + D ++ + GE L R + +
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 63 GTNKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIR 122
AL++ DV DAG+Y+ G I + + + P
Sbjct: 76 SLGN--AALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDP--- 129
Query: 123 QEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIE 182
L C+ + P VIW+ S QV + + K F + +
Sbjct: 130 -VTSEHEL--TCQAEGYPKAEVIWTSSDHQVLSG-KTTTTNSKREEKLFNVTSTLRINTT 185
Query: 183 DAGKYKVTAKNELGESNATISL 204
+ T + E N T L
Sbjct: 186 TNEIFYCTFRRLDPEENHTAEL 207
Score = 45.4 bits (107), Expect = 4e-06
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 31/147 (21%)
Query: 127 GKRLLFECRIQADPAP-----TVIWSHSGVQV-------------KEDKRHKFSIDKDG- 167
G + EC+ + V W + R + + KD
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 168 HSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPV 227
A+L+I DV ++DAG Y+ G I++ V K V
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVK-------VNAPYNKINQRILVV 127
Query: 228 TKQSDDDLNDIVIECRLVGEPEPTISW 254
+ + + C+ G P+ + W
Sbjct: 128 DPVTS----EHELTCQAEGYPKAEVIW 150
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 53.4 bits (128), Expect = 5e-09
Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 33/176 (18%)
Query: 35 NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLV-----ALELDDVIETDAGLYKVKAK 89
P +++W + + +++E + + N+ + +L + ++ +D Y++++
Sbjct: 21 VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80
Query: 90 NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHS 149
N L L + KP I E L C + +
Sbjct: 81 NITDT--MKFFLYV-------LEM--VSKPMIYWECSNATLT--CEVLEGTDVELKLYQG 127
Query: 150 GVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
++ ++ + +K A N + + + +N
Sbjct: 128 KEHLRSLRQ---------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
Score = 48.4 bits (115), Expect = 3e-07
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKD--GHSYF----ASLEIIDVT 180
+ F P V+W +V E + +F Y SL I ++T
Sbjct: 10 YGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVI 240
D +Y++ + N + + V KP+ + ++ +
Sbjct: 69 SSDEDEYEMESPNITDTMKFFLYVL-----EMVS----KPMIYW---------ECSNATL 110
Query: 241 ECRLVGEPEPTISW 254
C ++ + +
Sbjct: 111 TCEVLEGTDVELKL 124
Score = 27.2 bits (60), Expect = 3.5
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 14 KPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALEL 73
KP + E + C++L ++ ++G+ L + +
Sbjct: 98 KPMIYWE--CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTM 139
Query: 74 DDVIETDAGLYKVKAKNKMGEVAASINLN 102
+K KA N++ + + +N
Sbjct: 140 SYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 52.3 bits (125), Expect = 1e-08
Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 30/196 (15%)
Query: 22 EGNRLIFECQLLCNPKPD-IVWFRGETQLSEDTRTVMKTTPI----GTNKYLV------A 70
G + + K + I W ET L+ K+ I + +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 71 LELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRL 130
L+L ++ D G Y+ + K +S L + L + S ++ L
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRI----LRQLRNIQVTNHSQLFQNMTCEL 127
Query: 131 LFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
C ++ AD + W G + S D I Y
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWD--------------PRISSEQDYTC 173
Query: 190 TAKNELGESNATISLN 205
A+N + + ++S
Sbjct: 174 IAENAVSNLSFSVSAQ 189
Score = 47.7 bits (113), Expect = 6e-07
Identities = 16/141 (11%), Positives = 40/141 (28%), Gaps = 22/141 (15%)
Query: 127 GKRLLFECRIQADPAPT-VIWSHSG-----VQVKEDKRHKFSIDKDGHSYF------ASL 174
G+ + A + W + + E K + + SL
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 175 EIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDD 234
++ ++ +ED G Y+ + ++ +L T Q+
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQL-------RNIQVTNHSQLFQNMTC 125
Query: 235 LNDIVIECRLV-GEPEPTISW 254
++ + C + + + W
Sbjct: 126 --ELHLTCSVEDADDNVSFRW 144
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 50.8 bits (121), Expect = 5e-08
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-ASLEIIDVTIEDAGKYK-VTAK 192
R + V G E KR +F + G ASL + + +ED G Y +
Sbjct: 40 RHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVT 99
Query: 193 NELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEPT 251
G + I L V + ++ + C G P
Sbjct: 100 FPQGSRSVDIWLR-------VLAKPQNTAEVQKVQLTGEP----VPMARCVSTGGRPPAQ 148
Query: 252 ISW 254
I+W
Sbjct: 149 ITW 151
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 48.7 bits (115), Expect = 5e-07
Identities = 33/214 (15%), Positives = 59/214 (27%), Gaps = 22/214 (10%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLL-CNPKPD--IVWFRGETQLSEDTRTVMKTTPIGTN 65
P + G L CQ+ P+ + +V RGE +L +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE----- 141
Query: 66 KYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDG-----LAPTFLKKPS 120
V + + + + + + + N S P L P
Sbjct: 142 ---VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPR 198
Query: 121 IRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVT 180
+ + + C + + H + + + D S AS+ VT
Sbjct: 199 VLEV--DTQGTVVCSLDGLFPVSEAQVHLALG-DQRLNPTVTYGNDSFSAKASV---SVT 252
Query: 181 IEDAGKYKVTAKNELGESNATISLNFDSDDAPVP 214
ED G ++T LG + P P
Sbjct: 253 AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 45.2 bits (107), Expect = 1e-06
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQV------KEDKRHKFSIDKDGHSYFASLEIIDVT 180
G + CR+ + ++ WS+ Q K + ++ + + S+ + DV+
Sbjct: 21 GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL-SISVSDVS 79
Query: 181 IEDAGKY 187
+ D G+Y
Sbjct: 80 LSDEGQY 86
Score = 34.5 bits (79), Expect = 0.007
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTP----IGTNKYLVALELDDVI 77
EG I C++ N + W Q + + + +++ + DV
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 78 ETDAGLY 84
+D G Y
Sbjct: 80 LSDEGQY 86
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 45.3 bits (107), Expect = 3e-06
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 142 PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNAT 201
+ + +G + + K +D D + +L I +V+ ED G Y + +E E
Sbjct: 41 KILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLHE-TEDQWK 97
Query: 202 ISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGEPEPTISW 254
I++ V KP+ + + C ++ + +
Sbjct: 98 ITMEV---YEMVS----KPMIY---WECSN------ATLTCEVLEGTDVELKL 134
Score = 44.5 bits (105), Expect = 6e-06
Identities = 20/193 (10%), Positives = 48/193 (24%), Gaps = 36/193 (18%)
Query: 22 EGNRLIFECQL-LCNPKPDIVWFRGETQL---SEDTRTVMKTTPIGTNKYLV-----ALE 72
G+ + + W Q + ++ + AL
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 73 LDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLF 132
+ +V + D G Y ++ ++ + I + + KP I E
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQW-KITMEV-------YEM--VSKPMIYWE--CSNATL 120
Query: 133 ECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAK 192
C + + ++ ++ S +K A
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT---------------NLRAPFKCKAV 165
Query: 193 NELGESNATISLN 205
N + + + +N
Sbjct: 166 NRVSQESEMEVVN 178
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.4 bits (107), Expect = 4e-06
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 22/122 (18%)
Query: 140 PAPTVIWSHSG-VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK-----VTAKN 193
V+ SG + + + +++ D + S+ I+ + D G Y+
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNN---LSIVILALRPSDEGTYECVVLKYEKDA 91
Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVG-EPEPTI 252
E A ++L+ V + P ++ N I C G PEP +
Sbjct: 92 FKREHLAEVTLS-------VKADFPTPS-----ISDFEIPTSNIRRIICSTSGGFPEPHL 139
Query: 253 SW 254
SW
Sbjct: 140 SW 141
Score = 35.4 bits (81), Expect = 0.009
Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 5/138 (3%)
Query: 69 VALELDDVIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGK 128
+++ + + +D G Y+ + +L + PT + +
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124
Query: 129 RLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
R+ C P P + W +G ++ S D + Y S ++ + +
Sbjct: 125 RI--ICSTSGGFPEPHLSWLENGEELNAIN-TTVSQDPETELYAVSSKLD-FNMTTNHSF 180
Query: 188 KVTAKNELGESNATISLN 205
K N T + N
Sbjct: 181 MCLIKYGHLRVNQTFNWN 198
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 43.8 bits (103), Expect = 5e-06
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHK------FSIDKDGHSYFASLEIIDVT 180
G+ L +C ++ W + + + + S+ + +VT
Sbjct: 16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL-SITVPNVT 74
Query: 181 IEDAGKYK 188
++D G YK
Sbjct: 75 LQDEGVYK 82
Score = 35.7 bits (82), Expect = 0.003
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR--------GETQLSEDTRTVMKTT 60
S T + +EG L +C + W E + ++++ +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 61 PIGTNKYLVALELDDVIETDAGLYK 85
+++ + +V D G+YK
Sbjct: 62 SANQ----LSITVPNVTLQDEGVYK 82
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 43.7 bits (102), Expect = 1e-05
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGE- 197
A V ++ +VK + + +F + D SL I D +ED G Y +
Sbjct: 49 YYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVK 108
Query: 198 ---SNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV----GEPEP 250
++L + +P+ + RP + C L P
Sbjct: 109 YSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR-----------LSCSLPGSCEAGPPL 157
Query: 251 TISW 254
T SW
Sbjct: 158 TFSW 161
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 42.9 bits (100), Expect = 2e-05
Identities = 25/194 (12%), Positives = 44/194 (22%), Gaps = 44/194 (22%)
Query: 23 GNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIET-DA 81
G + C L + ++ W + +L + L L D E D+
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDS 57
Query: 82 GLYKVKAKNKMGEVAASINLNF-------SREQIDGLAPTFLKKPSIRQEDDGKRLLFEC 134
G Y + A K Q + K L+
Sbjct: 58 GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
Query: 135 RIQAD---------PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ D T+ W G + K + + + + G
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATK-----------NTWNLGNNAKDPRG 166
Query: 186 KYKVTAKNELGESN 199
Y+ E
Sbjct: 167 TYQCQGAKETSNPL 180
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.5 bits (102), Expect = 2e-05
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 139 DPAPTVIWSHSGVQVKEDKRHKF----SIDKDG-HSYFASLEIIDVTIEDAGKYKVTAKN 193
V G +V++ + + SI +DG + A+L I +VT D+GKY ++
Sbjct: 45 SLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD 104
Query: 194 ELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLVGE-PEPTI 252
A + L I +ECR G P+P I
Sbjct: 105 GDFYEKALVEL-------------KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQI 151
Query: 253 SW 254
W
Sbjct: 152 QW 153
Score = 42.8 bits (100), Expect = 3e-05
Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 18/176 (10%)
Query: 35 NPKPDIVWFRGETQLSEDT-----RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAK 89
+ V+ G+ + RT + I K AL + +V +D+G Y +
Sbjct: 46 LRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK--AALRIHNVTASDSGKYLCYFQ 103
Query: 90 NKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFECRIQAD-PAPTVIWSH 148
+ A + L + + + ECR P P + WS+
Sbjct: 104 DGDFYEKALVELKVA--------ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSN 155
Query: 149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
+ + D G A+ + + T ++ L T S+
Sbjct: 156 NKGENIPTVEAPVVADGVGLYAVAA--SVIMRGSSGEGVSCTIRSSLLGLEKTASI 209
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 42.9 bits (100), Expect = 3e-05
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 11/119 (9%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF--ASLEIIDVTIEDAGKYK-VTAKNELG 196
P + + + H + L + + + D Y V G
Sbjct: 43 ARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAG 102
Query: 197 ESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIECRLV-GEPEPTISW 254
+ AT LN V + + T +D + C G P P I+W
Sbjct: 103 TAEATARLN-------VFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW 154
Score = 27.1 bits (59), Expect = 6.0
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 71 LELDDVIETDAGLYK-VKAKNKMGEVAASINLNFSREQIDGLAP-----TFLKKPSIRQE 124
L L + D Y V G A+ LN A K ++
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV-------FAKPEATEVSPNKGTLSVM 131
Query: 125 DDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHK 160
+D + + C + +PAP + W +G +++
Sbjct: 132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMN 168
Score = 26.7 bits (58), Expect = 8.0
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 12 TQKPQLRQEDEGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRT 55
K L ++ + I C NP P I W+R +L
Sbjct: 123 PNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEM 167
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 39.1 bits (91), Expect = 2e-04
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ VI S V + R + + + +L + D+ ED+G Y
Sbjct: 42 YDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTY 94
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.0 bits (88), Expect = 4e-04
Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 21/119 (17%)
Query: 110 GLAPT--FLKKPSIRQEDDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRH-------- 159
G + T + Q DG+ +F + T W +G ++K ++
Sbjct: 4 GSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGAL 61
Query: 160 KFSIDKDGHSYFASLEIIDVTIEDAGKY-KVTAKNELGESNATISLNFDSDDAPVPGEG 217
++ I++ G + L + V +D+G + + +A +++ ++ P G
Sbjct: 62 RYRIEQKGLQH--RLILHAVKHQDSGALVGFSCPG--VQDSAALTIQ----ESSGPSSG 112
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 38.0 bits (88), Expect = 6e-04
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 139 DPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
V ++ V+E+ R +F + D + +L I D + DAG+Y
Sbjct: 55 SWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRY 103
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 37.0 bits (86), Expect = 0.001
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 134 CRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
C+ + ++ + + Q K+++ SI + + ++ + D+ + DAG Y
Sbjct: 37 CQGVPQRSCKTLVETDASEQ--LVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIY 89
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 36.8 bits (85), Expect = 0.001
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY--KVTAKNELGESNAT 201
+ +G +V K ++++ SL I + D+G Y +V + T
Sbjct: 45 TLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVT 104
Query: 202 ISLNFDSDDAPVP 214
SL VP
Sbjct: 105 FSLQV--KPELVP 115
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 38.8 bits (90), Expect = 0.001
Identities = 29/255 (11%), Positives = 66/255 (25%), Gaps = 49/255 (19%)
Query: 23 GNRLIFECQLLCN-------PKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDD 75
+ C L IVW + ++ T++ T + D
Sbjct: 18 HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS-------VTFTD 70
Query: 76 VIETDAGLY-KVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFEC 134
+ + L + ++ + I + I GL P KP C
Sbjct: 71 IASLNIQLTCNILTFGQLEQNVYGITI------ISGLPPE---KPKN----------LSC 111
Query: 135 RIQADPAPTVIWSHSG---------VQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
+ W ++ + + +
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 186 KYKVTAKNELGESNAT-ISLNFDSDDAPVPGEGTKPVFTERPVTK-----QSDDDLNDIV 239
+ V A+N LG+ + I+ + P P + +E + + + I+
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 231
Query: 240 IECRLVGEPEPTISW 254
++ + + +W
Sbjct: 232 LKYNIQYRTKDASTW 246
Score = 29.2 bits (65), Expect = 1.5
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 182 EDAGKYKVTAKNELGESNATISLNFDSDDAPV-PGEGTKPVFTERPVT---KQSDDDLND 237
D +T +N +G+S+A + D P K + + + +
Sbjct: 370 NDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKK 429
Query: 238 IVIECRLVGEPEPTISW 254
++E ++ + P I+
Sbjct: 430 YILEWCVLSDKAPCITD 446
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 36.1 bits (83), Expect = 0.002
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 142 PTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ V K ++ + D + SL I +VT++D G Y
Sbjct: 42 TNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY 87
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 36.7 bits (84), Expect = 0.002
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 127 GKRLLFECRIQADPAPTVIWSHSGVQV------KEDKRHKFSIDKDGHSYFASLEIIDVT 180
G ++ +C+++ ++ WS+ Q + + ++ + S+ I +V
Sbjct: 53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHEL-SISISNVA 111
Query: 181 IEDAGKY 187
+ D G+Y
Sbjct: 112 LADEGEY 118
Score = 30.5 bits (68), Expect = 0.26
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 22 EGNRLIFECQLLCNPKPDIVWFRGETQL--------SEDTRTVMKTTPIGTNKYLVALEL 73
G ++ +CQ+ + + W Q D R + + + + +++ +
Sbjct: 52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL----VTSTPHELSISI 107
Query: 74 DDVIETDAGLY 84
+V D G Y
Sbjct: 108 SNVALADEGEY 118
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 35.7 bits (82), Expect = 0.003
Identities = 10/77 (12%), Positives = 22/77 (28%)
Query: 136 IQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNEL 195
+ + +G V + ++ + + SL I + + D G Y +
Sbjct: 38 CRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPG 97
Query: 196 GESNATISLNFDSDDAP 212
L + P
Sbjct: 98 AFHFVDYMLEVKPELVP 114
Score = 26.1 bits (57), Expect = 6.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 40 IVWFRGETQLSEDTRTVMKT-----TPIGTNKYL---------VALELDDVIETDAGLY 84
+ W GE + S R+++ T T ++Y V+L +++ + D G Y
Sbjct: 31 MCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPY 89
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 37.1 bits (85), Expect = 0.003
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 8/88 (9%)
Query: 112 APTFLKKPSIRQEDDGKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
P + G + C + TV W + +
Sbjct: 6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR----- 60
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGES 198
L + V + D+G Y +
Sbjct: 61 --RLLLRSVQLHDSGNYSCYRAGRPAGT 86
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.9 bits (80), Expect = 0.005
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 19/93 (20%)
Query: 127 GKRLLFECRIQADPAP--TVIWSHS-----------GVQVKEDKRHKFSIDKDGHSYFAS 173
G ++ +C + + A V W G + + + +
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGL-----G 72
Query: 174 LEIIDVTIEDAGKYKVT-AKNELGESNATISLN 205
L + +T+ D G+Y G I L
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLE 105
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 35.0 bits (80), Expect = 0.006
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
C+ + + + S +F+I D + F ++ + D+ ED+G Y
Sbjct: 47 CKEASALVCIRLVTSSK-PRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.007
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 39 DIVWFRGETQLSEDTRTVMKTTPIGTNKY-LVALELDDVIET--DAGLYKV--KAKNKMG 93
++V++RG T + + +G + Y ++A+ V + L V + + G
Sbjct: 1784 EVVFYRGMT-----MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 94 EVAASINLNFSREQI---------DGLAP--TFLKKPSI 121
+ +N N +Q D + F+K I
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 33.1 bits (75), Expect = 0.11
Identities = 42/249 (16%), Positives = 61/249 (24%), Gaps = 92/249 (36%)
Query: 31 QLLCNP--KPDIVWFR---------GETQLS--EDTRTVMKTTPIGTNKYLVAL--ELDD 75
+ L NP PD + G QL+ T ++ TP YL
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 76 VIETDAGLYKVKAKNKMGEVAASINLNFSREQIDGLAPTFLKKPSIRQEDDGKRLLFE-- 133
++ A +I S E + +LF
Sbjct: 277 LV-----------------TAVAIAETDSWESFFVSVRKAI------------TVLFFIG 307
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFAS--LEIIDVTIEDAGKYKVTA 191
R + P S ++ + S L I ++T E Y V
Sbjct: 308 VRCY-EAYPNTSLPPSILEDSLENNEGV----------PSPMLSISNLTQEQVQDY-VNK 355
Query: 192 KN-ELGESNA-TISL-----NF-----------------------DSDDAPVPGEGTKPV 221
N L ISL N D + +P K
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 222 FTER--PVT 228
F+ R PV
Sbjct: 416 FSNRFLPVA 424
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.9 bits (80), Expect = 0.007
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 134 CRIQADPAPT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
CR ++ + +E KR + SI + + ++ + D+ DA Y
Sbjct: 38 CRGAIWRDCKILVKTSG--SEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTY 90
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 0.012
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 135 RIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYF-ASLEIIDVTIEDAGKY 187
R + V G E KR +F + G ASL + + +ED G Y
Sbjct: 41 RHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNY 94
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 33.3 bits (76), Expect = 0.021
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
CR Q + S V + ++ + + I ++ +D+G+Y
Sbjct: 38 CR-QGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRY 90
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 33.1 bits (76), Expect = 0.023
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 158 RHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEG 217
R+ ++DK S SL I D+ +ED+G YK A + ++ S ++ V G G
Sbjct: 54 RYDETVDKGSKS--FSLRISDLRVEDSGTYKCQA------DYSPSCYSYPSLESAVEGAG 105
Query: 218 TK 219
T
Sbjct: 106 TV 107
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 33.0 bits (75), Expect = 0.023
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 143 TVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
++ + G ++ K K+++ SL I + D+G Y
Sbjct: 45 ELLRTD-GTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVY 88
Score = 28.0 bits (62), Expect = 1.4
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 39 DIVWFRGETQLSEDTRTVMKT-----TPIGTNKYL---------VALELDDVIETDAGLY 84
+ W +G S+ +++T + KY V+L + + D+G+Y
Sbjct: 29 SMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVY 88
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.3 bits (76), Expect = 0.023
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 142 PTVIWSHSGVQVKEDKRHKFS-----IDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELG 196
VI +SG ++ +D D S AS+ + ++ + D G Y+ K G
Sbjct: 54 DQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPG 113
Query: 197 ESNATISL 204
+N I L
Sbjct: 114 VANKKIHL 121
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 40 IVWFRGETQLSEDT-----RTVMKTTPIGTNKYLVALELDDVIETDAGLYKVKAKNKMGE 94
I+ + G+ + R + + + ++ + ++ +D G Y+ K K G
Sbjct: 57 IILYSGDKIYDDYYPDLKGRVHFTSNDLKSGD--ASINVTNLQLSDIGTYQCKVKKAPGV 114
Query: 95 VAASINL 101
I+L
Sbjct: 115 ANKKIHL 121
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 34.1 bits (77), Expect = 0.028
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Query: 22 EGNRLIFECQLLC-NPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYLVALELDDVIETD 80
G C+L C + + W +T L + ++ L + + +
Sbjct: 21 LGASRQLTCRLACADRGASVQWRGLDTSLGA----------VQSDTGRSVLTVRNASLSA 70
Query: 81 AGLYKVKAKNKMGEVAASINLN 102
AG ++ L
Sbjct: 71 AGTRVCVGSCGGRTFQHTVQLL 92
Score = 29.9 bits (66), Expect = 0.65
Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 10/80 (12%)
Query: 127 GKRLLFECRIQ-ADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAG 185
G CR+ AD +V W + + + L + + ++ AG
Sbjct: 22 GASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR---------SVLTVRNASLSAAG 72
Query: 186 KYKVTAKNELGESNATISLN 205
T+ L
Sbjct: 73 TRVCVGSCGGRTFQHTVQLL 92
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.4 bits (76), Expect = 0.030
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 137 QADPAPTVIWSHSGVQVKEDKRHKFS-----IDKDGHSYFASLEIIDVTIEDAGKYKVTA 191
++ + V +G ++ ++ + + +L I +V D G Y
Sbjct: 45 RSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFF 104
Query: 192 KNELGESNATISLN 205
++ + A + L
Sbjct: 105 RDHSYQEEAAVELK 118
Score = 27.6 bits (61), Expect = 2.6
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 27 IFECQLLCNPKPD-----IVWFRG----------------ETQLSEDT-RTVMKTTPIGT 64
C++ +P + + W+R Q E RT + IG
Sbjct: 25 ELPCRI--SPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGE 82
Query: 65 NKYLVALELDDVIETDAGLYKVKAKNKMGEVAASINLNFS 104
K VAL + +V +D G Y ++ + A++ L
Sbjct: 83 GK--VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 32.4 bits (73), Expect = 0.030
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 9 PSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNKYL 68
TQ P + G +I C P +I+W + + D +
Sbjct: 8 GGITQTPY-KVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDH---- 60
Query: 69 VALELDDVIET-DAGLYKVKAKNKMGEVA 96
L L + E +G Y + E A
Sbjct: 61 --LSLKEFSELEQSGYYVCYPRGSKPEDA 87
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 32.3 bits (73), Expect = 0.057
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESN 199
V + + ++ E ++K ID++ + + + + ED G Y ++ +
Sbjct: 66 SNAKVSYIFNEKEIFEGPKYKMHIDRN--TGIIEMFMEKLQDEDEGTYTFQIQDGKATGH 123
Query: 200 ATISLNFDSDDA 211
+T+ L D
Sbjct: 124 STLVLIGDVYKK 135
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 31.0 bits (70), Expect = 0.12
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
CR I G + + SI + ++ + ++T EDAG Y
Sbjct: 32 CRPPQIFLCDKIVETKGSA--GKRNGRVSIRDSPANLSFTVTLENLTEEDAGTY 83
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.8 bits (72), Expect = 0.14
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 141 APT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+P +I KED R +K + SL I D D+ Y
Sbjct: 42 SPALLIAIRPVSNKKEDGRFTIFFNKREKKF--SLHIADSQPGDSATY 87
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 30.8 bits (70), Expect = 0.14
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
++ + S SL I D+T++D+G Y+ ++ G +A + D G GT
Sbjct: 54 RYVETVNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQY-----GGGTV 108
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.16
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 127 GKRLLFECRIQA-DPAPTVIWSHSG----VQVKEDKRHKFSIDKDGHSYF----ASLEII 177
G + + + W ++ V+ K F G +L I
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 178 DVTIEDAGKYKVTAKNELGES-NATISLN 205
V ED Y + + G I L
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
Score = 27.2 bits (60), Expect = 2.6
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 22 EGNRLIFECQL-LCNPKPDIVWFRGETQLSEDTRTVMKTTPIGTNK---YLV----ALEL 73
G+ + L + WF Q + + K L AL +
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 74 DDVIETDAGLYKVKAKNKMGEVA-ASINLN 102
V + D Y ++ K G I L
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 31.7 bits (72), Expect = 0.19
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+I S Q + R +S++ + +L I + +ED+ KY
Sbjct: 183 LIRQGSDEQNAKSGR--YSVNFKKAAKSVALTISALQLEDSAKY 224
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 30.2 bits (68), Expect = 0.20
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 134 CRIQADPAPTVIWSHSGVQVKEDKRHKFSI-DKDGHSYFASLEIIDVTIEDAGKY 187
CR + ++ S + + + G +E++ + EDAG+Y
Sbjct: 33 CRFLPEGCQPLVSSAV---DRRAPAGRRTFLTDLGGGLL-QVEMVTLQEEDAGEY 83
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.9 bits (71), Expect = 0.21
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 129 RLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
R C ++ T W H + + S + L I ++T + G Y
Sbjct: 517 RYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNC-------ILFIENLTAQQYGHYF 568
Query: 189 VTAKNELGESNATISLNFDSDD 210
A+ E +D
Sbjct: 569 CEAQ-EGSYFREAQHWQLLPED 589
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 30.0 bits (68), Expect = 0.27
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+S+ Q +D R + + H + + I+D D+G Y
Sbjct: 43 TEKQAAFSNGLSQPVQDARFQIIQLPNRHDF--HMNILDTRRNDSGIY 88
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 30.9 bits (70), Expect = 0.27
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 136 IQADPAPTV-------IWSHSGVQVKEDKRHKFSIDKDGHSYF---ASLEIIDVTIEDAG 185
+QA P+ V + V + ++K S + A L I + AG
Sbjct: 11 LQALPSSLVPLEKPVTLRCQGPPGVDL-----YRLEKLSSSRYQDQAVLFIPAMKRSLAG 65
Query: 186 KYKVTAKNELGES 198
+Y+ + +N S
Sbjct: 66 RYRCSYQNGSLWS 78
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 31.1 bits (70), Expect = 0.29
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 137 QADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
A PA +I++ S ++ S+ I ++T DAG Y
Sbjct: 41 GAGPARELIYNQKEGHFPRVTTVSESTKRENMD--FSISISNITPADAGTY 89
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 29.2 bits (65), Expect = 0.35
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 144 VIWSHSGVQVKEDKRHKFSIDKDGH-SYFASLEIIDVTIEDAGKYKVTAKNELGES 198
V W V E KR F L+I ++T +D+G Y VT + G
Sbjct: 30 VRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTR 85
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.9 bits (67), Expect = 0.37
Identities = 8/60 (13%), Positives = 16/60 (26%)
Query: 146 WSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLN 205
+ + + D S+ I ++ D G + KN T +
Sbjct: 55 KGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 30.9 bits (68), Expect = 0.45
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 12/113 (10%)
Query: 130 LLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKV 189
+C + V W +K + + + L I +++ D+G Y+
Sbjct: 551 AELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKN------LLIFNLSEGDSGVYQC 603
Query: 190 TAKNELGESNATISLNFDSDDAPVPGEGTKPVFTERPVTKQSDDDLNDIVIEC 242
++ E ++ + V P P + + I +
Sbjct: 604 LSE-ERVKNKTVFQVVAKH----VLEVKVVPKPVVAPTLSVVQTEGSRIATKV 651
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 30.2 bits (68), Expect = 0.48
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 11/88 (12%)
Query: 116 LKKPSIRQE-----DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
L K ++ E G + C+ A G D ++
Sbjct: 3 LSKATLWAEPGSVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLE-----PKN 56
Query: 171 FASLEIIDVTIEDAGKYKVTAKNELGES 198
A I +T AG+Y+ + G S
Sbjct: 57 KARFSIPSMTEHHAGRYRCYYYSPAGWS 84
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.0 bits (67), Expect = 0.54
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 141 APT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
T ++ S + + R S+DK +L I D+ Y
Sbjct: 42 GLTSLLLIQSSQREQTSGRLNASLDKSSGRS--TLYIAASQPGDSATY 87
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.8 bits (67), Expect = 0.56
Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 11/77 (14%)
Query: 116 LKKPSIRQE-----DDGKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
L KP I E K++ C+ A G D+
Sbjct: 2 LPKPFIWAEPHFMVPKEKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK---- 56
Query: 171 FASLEIIDVTIEDAGKY 187
I D+ AG+Y
Sbjct: 57 -VKFYIPDMNSRMAGQY 72
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 29.5 bits (66), Expect = 0.75
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 9/77 (11%)
Query: 116 LKKPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
P I + + +C+ + T + +E R ++
Sbjct: 7 FPMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETD--- 63
Query: 171 FASLEIIDVTIEDAGKY 187
I + AG+Y
Sbjct: 64 -PEFVIDHMDANKAGRY 79
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 29.7 bits (66), Expect = 0.77
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ R+ ++DKD +L I ++D Y
Sbjct: 48 TVLVDQKDKTSNGRYSATLDKDAKHS--TLHITATLLDDTATY 88
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.4 bits (64), Expect = 0.81
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 161 FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
+S D S ASL I D+ +ED+G YK A F++ G GT
Sbjct: 55 YSETVDEGSNSASLTIRDLRVEDSGTYKC---------KAYRRCAFNTGVGYKEGAGTV 104
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 29.5 bits (67), Expect = 0.90
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 145 IWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ + + + K K+ + + L I + ED Y
Sbjct: 52 VLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIY 94
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.1 bits (65), Expect = 1.0
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 141 APT-VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+P + K+ R +++ + L I ED+ Y
Sbjct: 42 SPEALFVMTLNGDEKKKGRISATLNTKEGY--SYLYIKGSQPEDSATY 87
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.7 bits (63), Expect = 1.1
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 151 VQVKEDKRHKFSIDKDGHSYF-----ASLEIIDVTIEDAGKYK--VTAKNELGE 197
V+ D + D G + +L + V +D G+Y V + E
Sbjct: 66 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 29.1 bits (65), Expect = 1.1
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 141 APTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNA 200
APT + + ++E R + + + L + ++ ++D+ Y
Sbjct: 41 APTFLSYNVLDGLEEKGRFSSFLSRSKGY--SYLLLKELQMKDSASYLCA---------- 88
Query: 201 TISLNFDSDDAPVPGEGTKPVFT 223
P G GT +
Sbjct: 89 --VQASGGSYIPTFGRGTSLIVH 109
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 28.4 bits (63), Expect = 1.2
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 134 CRIQADPAPTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKYK 188
+ T+ S + R + + SL+I + ++D Y
Sbjct: 39 LVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD-VSLQINTLQMDDRNHYT 94
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 29.1 bits (65), Expect = 1.3
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 14/75 (18%)
Query: 118 KPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
KP + G + C + + KED+ H G +
Sbjct: 24 KPFLSAWPSAVVPRGGHVTLRCHYR-HRFNNFMLY------KEDRIH--IPIFHGRIFQE 74
Query: 173 SLEIIDVTIEDAGKY 187
S + VT AG Y
Sbjct: 75 SFNMSPVTTAHAGNY 89
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 28.0 bits (62), Expect = 1.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 172 ASLEIIDVTIEDAGKYK 188
A+L + +T+ED G Y
Sbjct: 93 ATLALHGLTVEDEGNYT 109
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 28.6 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 144 VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+I S KED R F+I + SL I D D+ Y
Sbjct: 173 LISILSVSDKKEDGR--FTIFFNKREKKLSLHIADSQPGDSATY 214
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 1.8
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 116 LKKPSIRQEDD-----GKRLLFECRIQAD-PAPTVIWSHSGVQVKEDKRHKFSIDKDGHS 169
L KP++ E G + C Q A D+++
Sbjct: 3 LPKPTLWAEPGSVISWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLE-----PK 55
Query: 170 YFASLEIIDVTIEDAGKYKVTAKNELGES 198
A I +T + AG+Y+ ++ +G S
Sbjct: 56 NKARFSIPSMTEDYAGRYRCYYRSPVGWS 84
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 28.7 bits (64), Expect = 1.8
Identities = 14/75 (18%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 118 KPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFA 172
KP I E K++ C+ A G D+
Sbjct: 7 KPFIWAEPHFMVPKEKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK-----V 60
Query: 173 SLEIIDVTIEDAGKY 187
I D+ AG+Y
Sbjct: 61 KFYIPDMNSRMAGQY 75
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.5 bits (61), Expect = 1.9
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 134 CRIQADPAPT--VIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
I+ P + + ++ + ++++ +ED+G Y
Sbjct: 36 QIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLY 91
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 2.0
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 11/77 (14%)
Query: 116 LKKPSIRQEDD-----GKRLLFECRIQADPAPTVIWSHSGVQVKEDKRHKFSIDKDGHSY 170
L KP++ E G + C+ R
Sbjct: 3 LPKPTLWAEPGSVITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIP-----QELVK 56
Query: 171 FASLEIIDVTIEDAGKY 187
I +T E G+Y
Sbjct: 57 KGQFPIPSITWEHTGRY 73
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 27.5 bits (61), Expect = 2.1
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 134 CRIQADPAPTVIWSHSGVQ--VKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
I+ P + + + ++ + ++++ +ED+G Y
Sbjct: 41 QIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLY 96
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 27.6 bits (61), Expect = 2.2
Identities = 12/48 (25%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 140 PAPTVIWSHSGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
P V + S H A L I DV DA Y
Sbjct: 52 PGKEVRNGTPEFR-GRLAPLASSRFLHDHQ--AELHIRDVRGHDASIY 96
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 27.2 bits (60), Expect = 2.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 172 ASLEIIDVTIEDAGKYKVT 190
+L I D+ +EDAG YK
Sbjct: 72 YNLVISDLRMEDAGDYKAD 90
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.3 bits (61), Expect = 2.5
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 160 KFSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATISLNFDSDDAPVPGEGTK 219
++ + S SL I D+T+ED G Y+ G + S G+GT
Sbjct: 54 RYVETVNSGSKSFSLRINDLTVEDGGTYRCGL----GVAGGYCDYALCSSRYAECGDGTA 109
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.3 bits (61), Expect = 2.7
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ + + K S L I IED+ Y
Sbjct: 53 YKKENATVGHYSLNFQKPKSSI--GLIITATQIEDSAVY 89
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.1 bits (60), Expect = 2.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 173 SLEIIDVTIEDAGKYKVT 190
+L I +V ED G Y +
Sbjct: 74 ALHISNVRKEDKGTYYMR 91
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 27.0 bits (60), Expect = 3.0
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 7/27 (25%)
Query: 79 TDAGL-------YKVKAKNKMGEVAAS 98
TD G+ Y V A + E S
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNS 86
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 18/67 (26%)
Query: 136 IQADPAPTVIWSHSGVQVK-----EDKRHKFSIDKDGHSYF----------ASLEIIDVT 180
+ P+ V G V + +G F A
Sbjct: 8 LSLHPSQGVSL---GDTVTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTN 64
Query: 181 IEDAGKY 187
+EDAG Y
Sbjct: 65 LEDAGTY 71
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 3.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 172 ASLEIIDVTIEDAGKYKVTAKNELGESNATISL 204
ASL + + +E+AG+Y+ ++ T+ L
Sbjct: 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase,
dimethylarsenic, lyase, membrane, transmembrane; 2.55A
{Chlamydomonas reinhardtii} PDB: 3et6_B
Length = 190
Score = 27.3 bits (61), Expect = 4.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 39 DIVWFRGETQLSEDTRTVMKTTPIGTNKYLVAL--ELDDVIETDAGLYKVK 87
DIV F T+++ +++P+ L L D IE LYKV+
Sbjct: 16 DIVGF---TEIAS------RSSPLEVXSLLDELYQRFDAAIEEYPQLYKVE 57
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 26.3 bits (58), Expect = 4.7
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 172 ASLEIIDVTIEDAGKYK 188
+L + ++ I+D G Y+
Sbjct: 69 WTLRLHNLQIKDKGLYQ 85
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 26.5 bits (59), Expect = 4.8
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 149 SGVQVKEDKRHKFSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ + + K S L I IED+ Y
Sbjct: 53 YKKENATVGHYSLNFQKPKSSI--GLIITATQIEDSAVY 89
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.4 bits (58), Expect = 5.0
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 8 APSFTQKPQLRQEDEGNRLIFECQLLCNPKPDIVWFR 44
AP P+ + G ++ C++L + W
Sbjct: 4 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF 40
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 26.3 bits (58), Expect = 6.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 161 FSIDKDGHSYFASLEIIDVTIEDAGKY 187
+ + S SL I D+ +ED+G Y
Sbjct: 55 YVETVNKGSKSFSLRISDLRVEDSGTY 81
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 26.8 bits (60), Expect = 6.6
Identities = 6/11 (54%), Positives = 8/11 (72%), Gaps = 1/11 (9%)
Query: 37 KPDIVWFRGET 47
+P +VWF GE
Sbjct: 188 RPHVVWF-GEN 197
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 26.8 bits (59), Expect = 6.7
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 144 VIWSHSGVQVKEDKRHK-FSIDKDGHSYFASLEIIDVTIEDAGKYKVTAKNELGESNATI 202
+ + SG KE+ R K K+ ++L I D +ED+G Y A +
Sbjct: 46 LFYLASGT--KENGRLKSAFDSKERRY--STLHIRDAQLEDSGTYFCAADTWHISEGYEL 101
Query: 203 SLNFDSDDAPVPGEGTKP 220
+ V G+GT+
Sbjct: 102 GTDKL-----VFGQGTQV 114
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 26.5 bits (59), Expect = 7.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 160 KFSIDKDGHSYFASLEIIDVTIEDAGKY 187
KF +D+ + ++L I +V +D Y
Sbjct: 68 KFEVDRIPETSTSTLTIHNVEKQDIATY 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.392
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,833,563
Number of extensions: 224255
Number of successful extensions: 1810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 519
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)