BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7039
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
L GE +I +PFSG+P P W D + +G + + + T + D+G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
+ N G D + ++ V D P PP+G + VSD++ +S +L+W P DGGS ITNY+V
Sbjct: 177 VVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVSRDSVNLTWTEPASDGGSKITNYIV 235
Query: 488 EK 489
EK
Sbjct: 236 EK 237
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGET 70
D P P ++ +D +D V+L WT P SDGGS IT Y+VE T W + V A ET
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLR--VGQARET 254
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
TV L +YQF+V A N G + S+P+ P + K
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 274 FVTSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
VT + SL N V RKD+G Y + AKN +GID +E+ V P PP G + + V+
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVSR 212
Query: 333 ESVSMSWKPPVDDGGTPIT 351
+SV+++W P DGG+ IT
Sbjct: 213 DSVNLTWTEPASDGGSKIT 231
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 60
Query: 413 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV 446
Y TD + Y ++ N GS S + + V
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
PGK T ++ T ++ V L W P DGGS I GY+VEM+ K + W V T
Sbjct: 106 PGKITLMDVT---RNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKV--TEA 160
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GLI+GE Y F+V A N G + + + P++AK
Sbjct: 161 TITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
D PG P DL+ + K V L W PP+ DGGS I Y+VE ++ T V +T
Sbjct: 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDV 124
S V L EG +Y F+V A N G G ++ + A + L P + TL DV
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPP--GKITLMDV 114
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+D P PPQ L V ++T S +L+W PPL DGGS I NY+VEK ES
Sbjct: 3 MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRES 47
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 70/172 (40%), Gaps = 38/172 (22%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PGPP + VT SV+++W PP+ DGG+ I + + + + +A +
Sbjct: 6 PGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS- 63
Query: 378 PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL-VNTVG 436
W V+ + E + Y R Y I L T
Sbjct: 64 -----------WKVD------------QLQEGCSYYF-----RVLAENEYGIGLPAETAE 95
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S AS ++P PP G + + D+T S SLSW+ P DGGS I Y+VE
Sbjct: 96 SVKAS------ERPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVE 140
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 295 YKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+++ A+N+YGI + E V S+ P G I VT SVS+SW+ P DGG+ I G
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVPA 67
+P D PGKP L T + V L+W P GG IT Y+VE +D G W KA
Sbjct: 9 SPIDPPGKPVPLNIT---RHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAG 94
E TV GL E Y+F+V A NAAG
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAG 92
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 226 AHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+++ EFT + + E AYE+RV A NAAG P
Sbjct: 63 SNILENEFTVSGLTEDAAYEFRVIAKNAAGAISP 96
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 452 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PP P+ + +IT + +L W P GG IT+Y+VEK + G
Sbjct: 13 PPGKPVPL-NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG 55
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 29 HVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
+ L+W PP+ DGGSPI+ Y VEM + E V E CTV L+ G+TY F++R
Sbjct: 25 EIQLRWGPPLVDGGSPISCYSVEMSPIEKD-EPREVYQGSEVECTVSSLLPGKTYSFRLR 83
Query: 89 AVNAAGPGEASK 100
A N G G S+
Sbjct: 84 AANKMGFGPFSE 95
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 469 LSWKPPLDDGGSPITNYVVE 488
L W PPL DGGSPI+ Y VE
Sbjct: 28 LRWGPPLVDGGSPISCYSVE 47
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV-VPAGETSCTVPGLIEGETYQ 84
++ ++L WT P DG SP+ Y++EM + W + V TS TV GL+ +YQ
Sbjct: 32 ERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQ 90
Query: 85 FQVRAVNAAGPGEASKPT 102
F++ AVN G G+ SK T
Sbjct: 91 FRLCAVNDVGKGQFSKDT 108
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 442 CKVYVVDKPSPPQGPL-DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ V P P+ P+ +S + + +L+W P D G SP+ Y++E E+
Sbjct: 10 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSEN 60
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%)
Query: 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
D PG P ++ D ++V L WTPP DG + ITGY ++ DK V+ T
Sbjct: 15 IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
S T+ L+ G Y F+V + N G E + T
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMT 106
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 444 VYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
+ ++D+P PPQ + + D+ E+ +L+W PP DDG + IT Y ++K
Sbjct: 12 IQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQK 56
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
I++ ++ +PGPP + V E+V+++W PP DDG ITG
Sbjct: 10 IDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITG 51
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD--KTGNW 59
DH L +P + P +PT A++ V + W P +GG PI + VE K K G+W
Sbjct: 11 DHGRL--SPPEAPDRPTISTASE---TSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDW 64
Query: 60 EKAV-VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV 106
A +P S + GL +G +Y+F+VRA+N G E S P+ P V
Sbjct: 65 ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYV 112
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKT-GNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
V L W PP DGGS +T Y +E ++ G+W + + T T+ GL G+ Y+F++
Sbjct: 26 VILSWKPPALDGGSLVTNYTIEKREAMGGSW--SPCAKSRYTYTTIEGLRAGKQYEFRII 83
Query: 89 AVNAAGPGEASKPTAPIV 106
A N G + +PTAP++
Sbjct: 84 AENKHGQSKPCEPTAPVL 101
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
V +P PP+ P+ + +I E+ LSWKPP DGGS +TNY +EK E+ G
Sbjct: 7 VPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGG 54
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351
V V +P PP PI + E+V +SWKPP DGG+ +T
Sbjct: 4 VADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVT 42
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD---KTGNWEKAVVVPA 67
+D P P DLE TD V L WT P D SPIT +++E +D K G W V
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAG---PGEASK 100
+T+ + L Y F+V AVN+ G P EAS+
Sbjct: 73 TQTTAQL-NLSPYVNYSFRVMAVNSIGKSLPSEASE 107
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSE 505
V D P+PP L+++D +S LSW P DD SPIT +++E YE A L+ ++E
Sbjct: 13 VYDVPNPPFD-LELTDQLDKSVQLSWTP-GDDNNSPITKFIIE-YEDAMHKPGLWHHQTE 69
Query: 506 V 506
V
Sbjct: 70 V 70
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 350 ITGAPKITSDLSIRDMTVL-AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
I PKI +R + GE+ + VPF G+P+P +WT G + R+ TS+
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSD 76
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
T++ + A R +DSG Y + + D+A+ ++ VV+K
Sbjct: 77 FDTVFFVRQAAR-SDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLT--LENNLGTATASAHV 228
R V+T+ +TV + +RSD+G Y L+ +EN TAT V
Sbjct: 69 RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
PI+ P I + L +D TV + V +G P+PT IWT +G ++ G K++ SE
Sbjct: 2 PISSKPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG--KYKLSE 57
Query: 409 NQTIYRNKSAKRAT-DSGSYTIQLVNTVGSDSASCKVYV 446
++ + + K T DSG YT + N+ GS S+SCK+ +
Sbjct: 58 DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
EP W+ +G+ GG+ + K L+I SD+G Y+ T++N+ G+ ++S
Sbjct: 33 EPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC 92
Query: 227 HVT 229
+T
Sbjct: 93 KLT 95
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 354 PKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIW--------------------- 389
PKI D R + V+AG + + VP SG P PT IW
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 390 TVNGDE--------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
T + DE +GR++ ET+++++I+ + A++ D G YT+ + N VG D +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVN 132
Query: 442 CKVYVVD 448
V V+D
Sbjct: 133 LTVKVID 139
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 180 VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG 220
+C+ GR V+TTK ++ + + D G Y++T++N +G
Sbjct: 87 LCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 127
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKRA 421
D+++ G+ T+ F+G P P W+ G ++ GR E +++ T ++
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 73
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
D G YT+ L N GSDSA+ +++
Sbjct: 74 -DGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKRA 421
D+++ G+ T+ F+G P P W+ G ++ GR E +++ T ++
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
D G YT+ L N GSDSA+ +++
Sbjct: 76 -DGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVSPDGRIKFETSENQT 411
PKI + + R + + AG + V F G P PT WTV +G ++P+ + ++S
Sbjct: 3 PKILT--ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ SAKRA DSG+Y +++ N +G D A +V V
Sbjct: 61 FF--PSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
S+T S+ ++ R DSG YK++ KN+ G D A EV+V
Sbjct: 55 SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG 220
W++ + V S T + P R+D+G+Y L ++N LG
Sbjct: 36 WTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG 82
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
D V AGE + +G T W ++ +K E SEN + +A R
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA-RQEH 74
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
G YT+ + N +GS A + VVDKP PP G
Sbjct: 75 CGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
+ L I + ++ G Y + +N G A + + VV KP PP G
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T +S+ D +V G++ +++ G PKP W N V PD R E +E
Sbjct: 7 TFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRI 66
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
A D+G YT + VN G+ ++ V
Sbjct: 67 LAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKAVVVPAGET 70
D PG P+ + TD K+ V L W P + G P + Y++E N + V T
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT 72
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TV GL Y F VRA+N G + S + P+
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPV 107
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 436 GSDSASCKVY-VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA 493
GS +S K Y + D P PP P V+D+T S +LSW+ P G P + Y++E + +
Sbjct: 1 GSSGSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQS 57
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428
G + V + GRP P W + I E +E+ T K+ +R T +G Y
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 429 IQLVNTVGSDSASCKVYVVDK 449
+QL N G+ A V + DK
Sbjct: 177 VQLSNVFGTVDAILDVEIQDK 197
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP I ++ +D+T GE ++ GRP P W G E+ + K +S+ +T
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-SSDGRTH 63
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS-PPQGPL 457
+ D G YT N VG S K+ + P P PL
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL 109
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 19 DLEATDWDKDHVDLQW-TPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL 77
LE + L W PP+S P GY++E+ D G + V V ET CTV GL
Sbjct: 16 QLEECCTHNNSATLSWKQPPLST--VPADGYILELDDGNGGQFREVYV-GKETMCTVDGL 72
Query: 78 IEGETYQFQVRAVNAAGPGEASK 100
TY +V+A N G SK
Sbjct: 73 HFNSTYNARVKAFNKTGVSPYSK 95
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
D+TV G+ + SG P P W ++G V PD K EN + D
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRD 77
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+G YT N G +S S ++ V K S P
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-KAVVVPAGETSCTVP 75
PTDL+ T+ + + WTPP + ITGY + G E K + VP TS T+
Sbjct: 5 PTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVTIT 60
Query: 76 GLIEGETYQFQVRAV 90
GL G Y V A+
Sbjct: 61 GLTPGVEYVVSVYAL 75
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 110/311 (35%), Gaps = 89/311 (28%)
Query: 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAH----------VTGTEFTDNNVHEGKA 243
SE+VL I + D G Y + N+ +A ASA V F + + G +
Sbjct: 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446
Query: 244 YEYRVSAVNAAGTEKPKISLDALIGKRIK--------EFVT---STTASLNIKNSVRKDS 292
+ A G P+IS + L GK+I ++VT + LNI + D
Sbjct: 447 VFLKCV---AGGNPTPEISWE-LDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDG 502
Query: 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G+YK AK+ G V S ++ + G
Sbjct: 503 GLYKCIAKSKVG-------------------------VAEHSAKLN-----------VYG 526
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--------DEVSPDGRIKF 404
P I + ++AGE +T P +G P + +W + +V P+G +
Sbjct: 527 LPYIR---QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLII 583
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVDKP-----SPPQGPLD 458
E E R +D +YT N G S S +V V+ P + +GP
Sbjct: 584 ENVE-----------RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQ 632
Query: 459 VSDITPESCSL 469
V CS+
Sbjct: 633 VGQYLTLHCSV 643
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D P P ++ + + + + P S GG PI Y V++K+ K V +T
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASK 100
+ L TY+ +V AVN G G+ SK
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 50/224 (22%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
++SL+IK+ DSG Y EA + G + + + P ++ +++ S
Sbjct: 62 SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP---------KFISNQTIYYS 112
Query: 339 WKPPVDDGGTPITGAPKITSD--LSI---RDMTVLAGEEFTITVPFS-GRPKPTPIWTVN 392
W+ G PI + + S+ SI RD VL + T +S GR
Sbjct: 113 WE------GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL------ 160
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452
E++P TS+N D G Y N +G+ + + D PS
Sbjct: 161 --EIAP-------TSDN-------------DFGRYNCTATNHIGTRFQEYILALADVPSS 198
Query: 453 PQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496
P G + + +++ + +S+ P GG PI +Y V+ E A+ +
Sbjct: 199 PYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI 241
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)
Query: 183 IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV---TGTEFTDNNVH 239
+ GR +V+ + L I SD+G Y + +G S ++ +F N
Sbjct: 50 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--- 106
Query: 240 EGKAYEYRVSAVNAAGT-----------EKPKISLDALIGKRIKEFVTSTTASLNIKNSV 288
+ Y + + +N + + K+ L A +K + T L I +
Sbjct: 107 QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
D G Y A N G + + + P P G + ++ + +S+ P GG
Sbjct: 167 DNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGV 225
Query: 349 PI 350
PI
Sbjct: 226 PI 227
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D P P ++ + + + + P S GG PI Y V++K+ K V +T
Sbjct: 16 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 75
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASK 100
+ L TY+ +V AVN G G+ SK
Sbjct: 76 VVLNNLEPNTTYEIRVAAVNGKGQGDYSK 104
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKF 404
G + +GAP ++ ++ + G T T +G PKP W +G ++SP
Sbjct: 1 GSSGSSGAPFF--EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + T + +A D G+YTI N G S + ++ V
Sbjct: 59 QRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
L GE +I +PFSG+P P W D + +G + + + T + D+G Y
Sbjct: 115 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 174
Query: 428 TIQLVNTVGSDSASCKVYVVD 448
+ N G D + ++ V D
Sbjct: 175 VVCAKNRFGIDQKTVELDVAD 195
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 2 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 58
Query: 413 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV 446
Y TD + Y ++ N GS S + + V
Sbjct: 59 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 94
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 274 FVTSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMADIEV 312
VT + SL N V RKD+G Y + AKN +GID +E+
Sbjct: 152 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 191
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
L GE +I +PFSG+P P W D + +G + + + T + D+G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 428 TIQLVNTVGSDSASCKVYVVD 448
+ N G D + ++ V D
Sbjct: 177 VVCAKNRFGIDQKTVELDVAD 197
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 60
Query: 413 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV 446
Y TD + Y ++ N GS S + + V
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 274 FVTSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMADIEV 312
VT + SL N V RKD+G Y + AKN +GID +E+
Sbjct: 154 IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D P P ++ + + + + P S GG PI Y V++K+ K V +T
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASK 100
+ L TY+ +V AVN G G+ SK
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 50/239 (20%)
Query: 264 DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
D + RI+ ++SL+IK+ DSG Y EA + G + + + P
Sbjct: 47 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP----- 101
Query: 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD--LSI---RDMTVLAGEEFTITVP 378
++ +++ SW+ G PI + + S+ SI RD VL + T
Sbjct: 102 ----KFISNQTIYYSWE------GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKT 151
Query: 379 FS-GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437
+S GR E++P TS+N D G Y N +G+
Sbjct: 152 YSTGRKMIL--------EIAP-------TSDN-------------DFGRYNCTATNHIGT 183
Query: 438 DSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496
+ + D PS P G + + +++ + +S+ P GG PI +Y V+ E A+ +
Sbjct: 184 RFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEI 241
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 18/182 (9%)
Query: 183 IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV---TGTEFTDNNVH 239
+ GR +V+ + L I SD+G Y + +G S ++ +F N
Sbjct: 50 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--- 106
Query: 240 EGKAYEYRVSAVNAAGT-----------EKPKISLDALIGKRIKEFVTSTTASLNIKNSV 288
+ Y + + +N + + K+ L A +K + T L I +
Sbjct: 107 QTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
D G Y A N G + + + P P G + ++ + +S+ P GG
Sbjct: 167 DNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGV 225
Query: 349 PI 350
PI
Sbjct: 226 PI 227
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMK-DKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
V ++W PP G + + GYV+E + T +W A +T T+ GL +V+
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 89 AVNAAGPGEASKPTAPIVAK 108
AVNAAG E + PI+ K
Sbjct: 84 AVNAAGASEPKYYSQPILVK 103
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGETSC 72
P P D+ V L W PP G+ I + V + N E+A+ G
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKP 101
TV L Y F+V A N GPGE+S+P
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWGPGESSQP 105
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
PG+P + +A + + L WTPP SD I Y + KD E+ + + G TS
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPG-TSYR 73
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ GL Y F++ A + G G + TA I A+
Sbjct: 74 LQGLKPNSLYYFRLAARSPQGLGAS---TAEISAR 105
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R MTV GE + G P PT W G +S R + T++ ++ + S + A+
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ-AS 74
Query: 423 DSGSYTIQLVNTVGSDSA 440
D G+Y++ + N+ G A
Sbjct: 75 DEGNYSVVVENSEGKQEA 92
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
EP W GQV R V TTK ++ +I SD G+YS+ +EN+ G A
Sbjct: 35 EPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 94
Query: 227 HVT 229
+T
Sbjct: 95 TLT 97
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R MTV GE + G P PT W G +S R + T++ ++ + S + A+
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ-AS 80
Query: 423 DSGSYTIQLVNTVGSDSA 440
D G+Y++ + N+ G A
Sbjct: 81 DEGNYSVVVENSEGKQEA 98
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
EP W GQV R V TTK ++ +I SD G+YS+ +EN+ G A
Sbjct: 41 EPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 100
Query: 227 HVT 229
+T
Sbjct: 101 TLT 103
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
DKP P P I S ++W PP D+GG+ I YVVE E + G
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 12 DEPGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKT-GN-WEKAVVVPAG 68
D+PG P H + W PP +GG+ I YVVEM + + GN WE
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAG 94
E C L G Y+ +V ++ G
Sbjct: 76 EHLCDR--LNPGCFYRLRVYCISDGG 99
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426
V A + P SG P+PT W NG E PD RI T + +D G+
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 427 YTIQLVNTVGSDSASCKVYVVDK 449
YT + N GS + + ++ VV++
Sbjct: 89 YTCIVENEYGSINHTYQLDVVER 111
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%)
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426
V A + P SG P+PT W NG E PD RI T + +D G+
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 427 YTIQLVNTVGSDSASCKVYVVDK 449
YT + N GS + + ++ VV++
Sbjct: 88 YTCIVENEYGSINHTYQLDVVER 110
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKS 417
++ ++ + G T T +G PKP W +G ++SP + + T + +
Sbjct: 11 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 70
Query: 418 AKRATDSGSYTIQLVNTVGSDSASCKVYV 446
A D G+YTI N G S + ++ V
Sbjct: 71 ASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426
V A + P SG P PT W NG E PD RI T + +D G+
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 427 YTIQLVNTVGSDSASCKVYVVDK 449
YT + N GS + + ++ VV++
Sbjct: 88 YTCIVENEYGSINHTYQLDVVER 110
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
+ +D G+YT + N GS + + + VV++ P P+
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER--SPHRPI 111
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 12 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 71
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
+ +D G+YT + N GS + + + VV++ P P+
Sbjct: 72 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER--SPHRPI 110
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 11 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 70
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ +D G+YT + N GS + + + VV++
Sbjct: 71 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 103
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 21 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ +D G+YT + N GS + + + VV++
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEM--KDKTGNWEKAVVVPAGETSCTV 74
PTDL+ T + QWTPP +TGY V + K+KTG ++ + P +S V
Sbjct: 24 PTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAP-DSSSVVV 78
Query: 75 PGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
GL+ Y+ V A+ S+P +V +N++P
Sbjct: 79 SGLMVATKYEVSVYALKDT---LTSRPAQGVVTTLENVSP 115
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 352 GAPKITS--DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
GAP T+ R V A P G P PT W NG E + RI N
Sbjct: 6 GAPYWTNTEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRN 65
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
Q + +D G+YT + N GS + + + VV++
Sbjct: 66 QHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTD-----NNVHEGKAYEYR 247
KS +L+IP + D G Y EN+ G A +T + N++H E
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME-ESV 313
Query: 248 VSAVNAAGTEKPKISL----DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
A G KP D L+ ++ + +LNI D+G+Y+ A+N +
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLL---TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 304 GIDMADIEVVVVSK 317
G+ + E+ V+++
Sbjct: 371 GVIFSSAELSVIAE 384
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
I D+ V E +GRPKPT W NGD + RI+ E N +
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNL 356
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVV 447
+D+G Y N G +S ++ V+
Sbjct: 357 SDAGMYQCVAENKHGVIFSSAELSVI 382
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 46/249 (18%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
++ +A N+ G A +A +V K + L P R L DV G +F+ +
Sbjct: 75 EYTCKAENSVG---AVASSAVLVIKERKLPPSFARK-LKDVHETLGFPVAFECR------ 124
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETV--LDIP 201
+ SEP L W +G++ + A++QT+ V L I
Sbjct: 125 -------------------INGSEP-LQVSWYKDGEL--LKDDANLQTSFIHNVATLQIL 162
Query: 202 FCSRSDTGHYSLTLENNLGTATASAHVTGTEF------------TDNNVHEGKAYEYRVS 249
+S G Y+ + N LGTA++SA +T +E D + E ++ V+
Sbjct: 163 QTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT 222
Query: 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
K + + G K + TA+L + + D+G Y A N G D
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Query: 310 IEVVVVSKP 318
++ V P
Sbjct: 283 AQLGVQEPP 291
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 93/263 (35%), Gaps = 58/263 (22%)
Query: 205 RSDTGHYSLTLENNLGTATASAHVTGTE------FTDN--NVHEGK----AYEYRVSAVN 252
SD G Y+ EN++G +SA + E F +VHE A+E R++
Sbjct: 70 HSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN--- 126
Query: 253 AAGTEKPKISL--DALIGKRIKEFVTS---TTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
G+E ++S D + K TS A+L I + + G Y A N G
Sbjct: 127 --GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTAS 184
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
+ ++ + PP + + P SV DL++
Sbjct: 185 SSAKLTLSEHEVPP-----FFDLKPVSV-----------------------DLAL----- 211
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
GE T +G W + E+ P G K EN + D+G Y
Sbjct: 212 --GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG-DAGQY 268
Query: 428 TIQLVNTVGSDSASCKVYVVDKP 450
T N G DS S ++ V + P
Sbjct: 269 TCYASNVAGKDSCSAQLGVQEPP 291
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 40/182 (21%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
GK+ K + S++I N D G Y+ +A ND G D
Sbjct: 428 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD--------------------- 466
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
T V G + P+ LS D++ + GEE + G +
Sbjct: 467 TCV---------------GSITLKAPPRFVKKLS--DISTVVGEEVQLQATIEGAEPISV 509
Query: 388 IWTVN-GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
W + G+ V I SEN + A+ A ++G YT Q+ N G+ + V
Sbjct: 510 AWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSV 568
Query: 447 VD 448
++
Sbjct: 569 LE 570
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTGNWE 60
+H+ P P P D+ A+ + L W P SD G +T V K+
Sbjct: 8 EHAPATTGPL--PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARER 65
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
GE T+ L+ Y F+V A N G GE+S P
Sbjct: 66 VENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAP 106
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEM--KDKTGNWEKAVVVPAGETSCTV 74
PTDL+ T + QWTPP +TGY V + K+KTG ++ + P +S V
Sbjct: 5 PTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAP-DSSSVVV 59
Query: 75 PGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
GL+ Y+ V A+ S+P +V +N++P
Sbjct: 60 SGLMVATKYEVSVYALKDT---LTSRPAQGVVTTLENVSP 96
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAK 419
D+ V E T+ G+P+PT W +G+ VS + R++F+ YR K
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA-LFFYRTMQGK 76
Query: 420 RATDSGSYTIQLVNTVG---SDSASCKVYVV 447
+ D G Y N VG S AS ++ V+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAK 419
D+ V E T+ G+P+PT W +G+ VS + R++F+ YR K
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA-LFFYRTMQGK 76
Query: 420 RATDSGSYTIQLVNTVG---SDSASCKVYVV 447
+ D G Y N VG S AS ++ V+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTD-----NNVHEGKAYEYR 247
KS +L+IP + D G Y EN+ G A +T + N++H E
Sbjct: 254 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAME-ESV 312
Query: 248 VSAVNAAGTEKPKISL----DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
A G KP D L+ ++ + +LNI D+G+Y+ A+N +
Sbjct: 313 FWECKANGRPKPTYRWLKNGDPLL---TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 304 GIDMADIEVVVVSK 317
G+ + E+ V+++
Sbjct: 370 GVIFSSAELSVIAE 383
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
I D+ V E +GRPKPT W NGD + RI+ E N +
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGT-----LNITIVNL 355
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVV 447
+D+G Y N G +S ++ V+
Sbjct: 356 SDAGMYQCVAENKHGVIFSSAELSVI 381
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R V A P G P PT W NG E + RI NQ + +
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPS 85
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
D G+YT + N GS + + + VV++ P P+
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDVVER--SPHRPI 118
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 21 TEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 417 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
+ +D G+YT + N GS + + + VV++ P P+
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER--SPHRPI 119
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 40 DGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
DGGSPI Y+V + + W+ + +P+G + L Y+ V A N G +A+
Sbjct: 135 DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ T GEE T + SG P+P W NG + + + + S + RN +D
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSD 69
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
G Y + N G D + V +P Q
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ 100
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 40 DGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
DGGSPI Y+V + + W+ + +P+G + L Y+ V A N G +A+
Sbjct: 135 DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 38/168 (22%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
A L I + +SG Y ++A N G + E++V ++ PP ++
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP----NFVQ---------- 108
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399
++ MTV G + + V +G P P + +G E+
Sbjct: 109 ---------------------RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI--Q 145
Query: 400 GRIKFETSENQTIYRNKSAKRA-TDSGSYTIQLVNTVGSDSASCKVYV 446
+ F+ S+ +Y A+ DSG+Y++ N+VG +++ ++ V
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSE--TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W +GQV VQ + S+ L IP +++++G YSL N G AT++A +
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK 98
Query: 232 EFTD--NNVHEGKAYEYRVSA-----VNAAGTEKPKI-----------SLDALIGKRIKE 273
T N V ++ R + V G P + SLD I +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ SL I + +DSG Y + A N G + E++V
Sbjct: 159 Y------SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFET 406
T AP T L + + VL G T SG P P W +G +S P +I F
Sbjct: 3 TQAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF-- 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
S+ + + +A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 59 SDGRAKLTIPAVTKA-NSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 38/168 (22%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
A L I + +SG Y ++A N G + E++V ++ PP ++
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP----NFVQ---------- 108
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399
++ MTV G + + V +G P P + +G E+
Sbjct: 109 ---------------------RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI--Q 145
Query: 400 GRIKFETSENQTIYRNKSAKRA-TDSGSYTIQLVNTVGSDSASCKVYV 446
+ F+ S+ +Y A+ DSG+Y++ N+VG +++ ++ V
Sbjct: 146 SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSE--TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W +GQV VQ + S+ L IP +++++G YSL N G AT++A +
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK 98
Query: 232 EFTD--NNVHEGKAYEYRVSA-----VNAAGTEKPKI-----------SLDALIGKRIKE 273
T N V ++ R + V G P + SLD I +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ SL I + +DSG Y + A N G + E++V
Sbjct: 159 Y------SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFET 406
T AP T L + + VL G T SG P P W +G +S P +I F
Sbjct: 3 TQAPTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF-- 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
S+ + + +A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 59 SDGRAKLTIPAVTKA-NSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|2EKJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 105
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 28 DHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86
D + + WTPP+ + Y + +G EK+V VP + T+P L Y+
Sbjct: 22 DSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVL 77
Query: 87 VRAVNAAGPGEA 98
V A+ AAG EA
Sbjct: 78 VSAIYAAGRSEA 89
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 11/152 (7%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W +N Q + R +Q + L + +R+D G Y ++N L + + +
Sbjct: 322 WWVNNQSLPVSPR--LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 234 TDNNVHEGKAYEYRVSAVNAA----GTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVR 289
++ +Y Y VN + P LI I++ T L I N
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH----TQELFISNITE 435
Query: 290 KDSGIYKIEAKNDY-GIDMADIEVVVVSKPGP 320
K+SG+Y +A N G ++ + VS P
Sbjct: 436 KNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii
Module 2
Length = 96
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 40 DGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
DGGSPI Y+V+ + W+ + +P+G + L Y+ V A N G +A+
Sbjct: 28 DGGSPIRHYLVKYRALASEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 87
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 27 KDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQ 86
+ V L W P G I Y ++ +K + + A T TV GL G Y FQ
Sbjct: 24 QTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQ 82
Query: 87 VRAVNAAGPGEASKPTAPIVAKP 109
VRA +AG G S+ KP
Sbjct: 83 VRARTSAGCGRFSQAMEVETGKP 105
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQT 411
AP IT +L + T GE ++ SG P P +W + + + D G + + + N T
Sbjct: 10 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVG 436
I R R D G YT Q + +G
Sbjct: 68 IRR----VRKEDEGLYTCQACSVLG 88
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQT 411
AP IT +L + T GE ++ SG P P +W + + + D G + + + N T
Sbjct: 666 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 723
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGS 437
I R R D G YT Q + +G
Sbjct: 724 IRR----VRKEDEGLYTCQACSVLGC 745
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 32 LQWTPPISDGGSPITGYVVE-MKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90
L+W PP G I GY+VE + + W A P TV L G F+V V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 91 NAAGPGEASKPTAPIVAK 108
N AG E + P+ +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG-ETSCTVPGLIEGETYQFQVR 88
V L W PP + GYV+E + + WE AG ET VPGLI+ Y+F++
Sbjct: 23 VLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLV 81
Query: 89 A 89
A
Sbjct: 82 A 82
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 44/194 (22%)
Query: 253 AAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312
A G P+I L G + ++++S L+I+N +D G Y+ EA+N G D +
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSKWLSSEPL-LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
++ ++P D+ V I D G +
Sbjct: 290 IIHAQP-------DWLDV-------------------------------ITDTEADIGSD 311
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ SG+P+P W +G ++ RI+ E + S DSG Y
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRF-----SKLVLEDSGMYQCVAE 366
Query: 433 NTVGSDSASCKVYV 446
N G+ AS ++ V
Sbjct: 367 NKHGTVYASAELTV 380
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ T GEE T + SG P+P W NG + + + + S + RN +D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSD 163
Query: 424 SGSYTIQLVNTVGSD--SASCKVYV 446
G Y + N G D A +V+V
Sbjct: 164 GGPYVCRATNKAGEDEKQAFLQVFV 188
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 15 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 74
Query: 417 SAKRATDSGSYTIQLVNTVGS 437
+ +D G+YT + N GS
Sbjct: 75 ESVVPSDKGNYTCVVENEYGS 95
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 10 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 69
Query: 417 SAKRATDSGSYTIQLVNTVGS 437
+ +D G+YT + N GS
Sbjct: 70 ESVVPSDKGNYTCVVENEYGS 90
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 30/81 (37%)
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 416
T + R V A P G P PT W NG E + RI NQ
Sbjct: 14 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 73
Query: 417 SAKRATDSGSYTIQLVNTVGS 437
+ +D G+YT + N GS
Sbjct: 74 ESVVPSDKGNYTCVVENEYGS 94
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ T GEE T + SG P+P W NG + + + + S + RN +D
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII---NSD 259
Query: 424 SGSYTIQLVNTVGSD--SASCKVYV 446
G Y + N G D A +V+V
Sbjct: 260 GGPYVCRATNKAGEDEKQAFLQVFV 284
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 369 AGEEFTITVPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRNKSAKR--- 420
A E +PFS G+P P+ W NG ++ I E + N+T+ R+ +
Sbjct: 258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV-RHGCLRLNQP 316
Query: 421 -ATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
++G+YT+ N G SAS +D P
Sbjct: 317 THVNNGNYTLLAANPFGQASASIMAAFMDNP 347
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ----TIYRNKSAK 419
D T L+G + +G PKP W G +VS +FE E ++ R + +
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ---RFEVIEFDDGAGSVLRIQPLR 72
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
D Y N++G + S K+ V+++ P G
Sbjct: 73 VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSG 108
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + + AP +S L +D V+ G++F + G P P W +NG + +
Sbjct: 4 GSSGMEVAPSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI----QYARS 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
T E + D G+YT N +G S S V V
Sbjct: 58 TCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type
Iii Domain Of Human Neogenin
Length = 116
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
PG +L A + + W P+S G I Y + +K + E+ V V + S T
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGE-IQNYKLYYMEKGTDKEQDVDVSS--HSYT 74
Query: 74 VPGLIEGETYQFQVRAVNAAGPG 96
+ GL + Y F+V A N GPG
Sbjct: 75 INGLKKYTEYSFRVVAYNKHGPG 97
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ----TIYRNKSAK 419
D T L+G + +G PKP W G +VS +FE E ++ R + +
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ---RFEVIEFDDGAGSVLRIQPLR 71
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
D Y N++G + S K+ V+++ P G
Sbjct: 72 VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPG 107
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 17 PTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75
P +L T +L W PP+ ++ I Y V +D E + +T T+
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNI--TTDTRFTLT 69
Query: 76 GLIEGETYQFQVRAVNAAGPGEAS 99
GL TY +VRA + G G S
Sbjct: 70 GLKPDTTYDIKVRAWTSKGSGPLS 93
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
EP P + K+ + LQW P SD GS I +V+E + GN E +
Sbjct: 17 EPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQF 75
Query: 73 TVPGLIEGETYQFQVRAVNAAG 94
+ L +F++ A N G
Sbjct: 76 KITKLSPAMGCKFRLSARNDYG 97
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
D P+PP+ +++ T S +L WK P D+ GS I N+V+E
Sbjct: 19 DIPNPPR----IANRTKNSLTLQWKAPSDN-GSKIQNFVLE 54
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
+T+ G+ +T G P P W N ++ D + +T Y + DS
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + + N GS+++ V V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSV 313
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK-DKTGNWEKAVVV--- 65
P + PG PT+L ++ V LQ+ P DG + I+ ++VE + G E+ +++
Sbjct: 14 PPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQL 72
Query: 66 --PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
S VP L Y F++R VN G S+P+ I
Sbjct: 73 SNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 32.0 bits (71), Expect = 0.84, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+M++ G + SG P P W +NG V D K SE RA+D
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASD 73
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDK 449
+G+Y N G + + ++ V+ K
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVLAK 99
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
+I DM V+ G G P P +W + + V + + E S
Sbjct: 47 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC 106
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYV 446
D YT + VN++G + + ++ V
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
+I DM V+ G G P P +W + + V + + E S
Sbjct: 47 TILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC 106
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYV 446
D YT + VN++G + + ++ V
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 377 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 428
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 429 IQLVNTVGSDSASCKVYVVDKP 450
+ N G SAS +D P
Sbjct: 84 LLAANPFGQASASIMAAFMDNP 105
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418
DL + + GE T +G W + E+ P G K EN
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 419 KRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ D+G YT N G DS S ++ V + P
Sbjct: 69 TKG-DAGQYTCYASNVAGKDSCSAQLGVQEPP 99
>pdb|1SV6|A Chain A, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|B Chain B, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|C Chain C, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|D Chain D, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
pdb|1SV6|E Chain E, Crystal Structure Of 2-Hydroxypentadienoic Acid Hydratase
From Escherichia Coli
Length = 269
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 427 YTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSD 461
++IQ V+TV +D+ASC VYV+ P+ LD+ +
Sbjct: 147 WSIQFVDTV-ADNASCGVYVIGGPAQRPAGLDLKN 180
>pdb|2WQT|A Chain A, Dodecahedral Assembly Of Mhpd
pdb|2WQT|B Chain B, Dodecahedral Assembly Of Mhpd
pdb|2WQT|C Chain C, Dodecahedral Assembly Of Mhpd
pdb|2WQT|D Chain D, Dodecahedral Assembly Of Mhpd
pdb|2WQT|E Chain E, Dodecahedral Assembly Of Mhpd
pdb|2WQT|F Chain F, Dodecahedral Assembly Of Mhpd
pdb|2WQT|G Chain G, Dodecahedral Assembly Of Mhpd
pdb|2WQT|H Chain H, Dodecahedral Assembly Of Mhpd
pdb|2WQT|I Chain I, Dodecahedral Assembly Of Mhpd
pdb|2WQT|J Chain J, Dodecahedral Assembly Of Mhpd
pdb|2WQT|K Chain K, Dodecahedral Assembly Of Mhpd
pdb|2WQT|L Chain L, Dodecahedral Assembly Of Mhpd
pdb|2WQT|M Chain M, Dodecahedral Assembly Of Mhpd
pdb|2WQT|N Chain N, Dodecahedral Assembly Of Mhpd
pdb|2WQT|O Chain O, Dodecahedral Assembly Of Mhpd
pdb|2WQT|P Chain P, Dodecahedral Assembly Of Mhpd
pdb|2WQT|Q Chain Q, Dodecahedral Assembly Of Mhpd
pdb|2WQT|R Chain R, Dodecahedral Assembly Of Mhpd
pdb|2WQT|S Chain S, Dodecahedral Assembly Of Mhpd
pdb|2WQT|T Chain T, Dodecahedral Assembly Of Mhpd
Length = 270
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 427 YTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSD 461
++IQ V+TV +D+ASC VYV+ P+ LD+ +
Sbjct: 148 WSIQFVDTV-ADNASCGVYVIGGPAQRPAGLDLKN 181
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 377 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 428
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 429 IQLVNTVGSDSASCKVYVVDKP 450
+ N G SAS +D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 17/144 (11%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FT 234
++ G Q T +E L IP S D G Y EN+ G T + +
Sbjct: 242 KVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVIS 301
Query: 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISL----DALIGKRIKEFVTSTTASLNIKNSVRK 290
D G + AAG +P + + L + E + L +
Sbjct: 302 DTEADIGSNLRW---GCAAAGKPRPTVRWLRNGEPLASQNRVEVL---AGDLRFSKLSLE 355
Query: 291 DSGIYKIEAKNDYGIDMADIEVVV 314
DSG+Y+ A+N +G A E+ V
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAV 379
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 44/194 (22%)
Query: 253 AAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312
A G P+I + G ++ T+ +L I + +D G Y+ EA+N G D +
Sbjct: 230 AFGNPVPRIKWRKVDGSLSPQW-TTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI 288
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
+V ++P W + D I G
Sbjct: 289 IVQAQP-------------------EWLKVISDTEADI-------------------GSN 310
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+G+P+PT W NG+ ++ R++ + + S DSG Y
Sbjct: 311 LRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRF-----SKLSLEDSGMYQCVAE 365
Query: 433 NTVGSDSASCKVYV 446
N G+ AS ++ V
Sbjct: 366 NKHGTIYASAELAV 379
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQ 410
APK+ +++ G + IT P T W +G + S IK + +
Sbjct: 19 APKLQGPVAVY---TWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLS 470
+ Y + D G+Y VN +G +S + D PS P +D + + +
Sbjct: 76 S-YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS--IDQVEPYSSTAQVQ 132
Query: 471 WKPPLDDGGSPITNYVVE 488
+ P GG PI Y E
Sbjct: 133 FDEPEATGGVPILKYKAE 150
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD------GRIKFETS 407
P+I S D+ V GE T+ GRP PT W G+ V D R+ +
Sbjct: 10 PRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKVYVVDKPSPPQGPLDVSDITP 464
+ K D G Y N +G S AS +V ++ + Q P DV
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL-RDDFRQNPSDVMVAVG 126
Query: 465 ESCSLSWKPP 474
E + +PP
Sbjct: 127 EPAVMECQPP 136
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-AGETSC 72
P PT L + + + W P + P+ GY VE + G + +P +TS
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 73 TVPGLIEGETYQFQVRAVNAAGPG 96
V L+ +Y F+VRA + G G
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEGWG 99
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE----NQTIYRNKSAK 419
D T ++G + +G P+P +W G +VS +FE E + ++ R + +
Sbjct: 15 DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ---RFEVIEFDDGSGSVLRIQPLR 71
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
D Y N VG S S ++ V+ + P+G
Sbjct: 72 TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418
DL + + GE T +G W + E+ P G K EN
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 419 KRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ D+G YT N G DS S ++ V +PP+
Sbjct: 69 TKG-DAGQYTCYASNVAGKDSCSAQLGV---QAPPR 100
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431
EF V SG+P PT W NGD V P + N I +D G Y
Sbjct: 331 EFECAV--SGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRIL----GVVKSDEGFYQCVA 384
Query: 432 VNTVGSDSASCKVYVVDKPS 451
N G+ +S ++ +V KP+
Sbjct: 385 ENEAGNAQSSAQL-IVPKPA 403
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 377 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 428
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 429 IQLVNTVGSDSASCKVYVVDKPSP--PQGPLDVSDITPESCSLSWKP 473
+ N G SAS +D P P+ P+ P++ S S P
Sbjct: 80 LLAANPFGQASASIMAAFMDNPFEFNPEDPI------PDTNSTSGDP 120
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
+ LQW+ P Y++EM+++T + + + TV L Y+F+V A
Sbjct: 24 LSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIA 83
Query: 90 VNAAG 94
N+ G
Sbjct: 84 YNSEG 88
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD----EVSPDGRIKFETSEN 409
P + + SI + T G+ T+ G P+PT WT +G+ E D + F +
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 254
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ RN D Y N G AS + V K
Sbjct: 255 ELTIRNVD---KNDEAEYVCIAENKAGEQDASIHLKVFAK 291
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
+T+ G+ +T G P P W N ++ + +T Y + DS
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + + N GS+++ V V
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSV 208
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 5 VLIKNPFDEP-GKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGNWE-K 61
V ++ D P P +L + + + W PP + ITGY + + + +
Sbjct: 9 VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT 68
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
+V + S + GL G Y F+V A+ G G A+
Sbjct: 69 ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPAT 106
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLF 500
PS P P+ VS+ + + L WKPP D G+ IT+Y+V +E S+LF
Sbjct: 595 PSVPLDPISVSNSSSQI-ILKWKPPSDPNGN-ITHYLV-FWERQAEDSELF 642
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLF 500
PS P P+ VS+ + + L WKPP D G+ IT+Y+V +E S+LF
Sbjct: 595 PSVPLDPISVSNSSSQI-ILKWKPPSDPNGN-ITHYLV-FWERQAEDSELF 642
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 356 ITSDLSIRDMTVLAG-----EEFTITVPFS---GRPKPTPIWTVNGDEVSPDGRIKFETS 407
+T D S+ D +L G E + VP + K T I+ GD V P+ IK+
Sbjct: 79 LTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANE 138
Query: 408 ENQTIYRNKSA 418
+N +++ A
Sbjct: 139 QNTALFKALEA 149
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ETSENQTIYRNKSAKR 420
R + V++G E + G P P +W G +++ R+ F + +E+ + +A
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL---TAAL 78
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
TD+G Y + N G A+ V V++ P+
Sbjct: 79 PTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ETSENQTIYRNKSAKR 420
R + V++G E + G P P +W G +++ R+ F + +E+ + +A
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL---TAAL 78
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
TD+G Y + N G A+ V V++ P+
Sbjct: 79 PTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2WW8|A Chain A, Structure Of The Pilus Adhesin (Rrga) From Streptococcus
Pneumoniae
Length = 893
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P+ T I + L ++ I + SG+ ++ V D I + S + +
Sbjct: 185 PEGTLSKRIYQVNNLDDNQYGIELTVSGKT----VYEQKDKSVPLDVVILLDNSNSMSNI 240
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSAS 441
RNK+A+RA +G T L++ + SDS +
Sbjct: 241 RNKNARRAERAGEATRSLIDKITSDSEN 268
>pdb|2CSP|A Chain A, Solution Structure Of The Fniii Domain Of Human
Rim-Binding Protein 2
Length = 130
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 319 GPPTGPIDYTT---VTPESVSMSWKPPV 343
GPP P D T VTP ++ +SW+PPV
Sbjct: 16 GPPAPPQDVTVQAGVTPATIRVSWRPPV 43
>pdb|1DMS|A Chain A, Structure Of Dmso Reductase
Length = 781
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 361 SIRDMTVLAGEE---FTITV---------PFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
++ + TV++G FT TV P+ P PTP+ D + RIK+
Sbjct: 2 ALANGTVMSGSHWGVFTATVENGRATAFTPWEKDPHPTPMLEGVLDSIYSPTRIKYPMVR 61
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
+ + + +A R+T +++ D + +V V++ PQG S
Sbjct: 62 REFLEKGVNADRSTRGNGDFVRVSWDQALDLVAAEVKRVEETYGPQGVF--------GGS 113
Query: 469 LSWKPP 474
WK P
Sbjct: 114 YGWKSP 119
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 384 KPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414
K T I+ GD V P+ IKF ++N +++
Sbjct: 115 KTTAIFHTKGDAVVPEENIKFADAQNTALFK 145
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ETSENQTIYRNKSAKR 420
R + V++G E + G P P +W G +++ R+ F + +E+ + +A
Sbjct: 21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL---TAAL 77
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
TD+G Y + N G A+ V V++ P
Sbjct: 78 PTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 30 VDLQWTPPISDGGSP-ITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
+ + W PP S + ITGY + + T E + P GL +G Y FQV
Sbjct: 45 IKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEP-NNLWYLFTGLEKGSQYSFQVS 103
Query: 89 A--VNAAGP 95
A VN GP
Sbjct: 104 AMTVNGTGP 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.130 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,646,088
Number of Sequences: 62578
Number of extensions: 749361
Number of successful extensions: 2123
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 384
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)