Query psy7039
Match_columns 516
No_of_seqs 234 out of 2618
Neff 10.0
Searched_HMMs 46136
Date Sat Aug 17 01:24:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 9.5E-38 2.1E-42 323.6 38.3 391 22-499 251-662 (1051)
2 KOG3513|consensus 100.0 6.6E-32 1.4E-36 280.4 38.3 397 2-474 125-541 (1051)
3 KOG4221|consensus 100.0 8E-31 1.7E-35 270.6 32.7 434 19-496 147-662 (1381)
4 KOG4221|consensus 100.0 1.6E-29 3.5E-34 261.0 33.8 404 26-512 53-582 (1381)
5 KOG4222|consensus 99.9 1.2E-25 2.6E-30 231.4 20.2 402 12-496 133-572 (1281)
6 PHA02785 IL-beta-binding prote 99.9 6.5E-22 1.4E-26 191.6 26.1 251 124-437 36-317 (326)
7 KOG4194|consensus 99.9 5.9E-22 1.3E-26 192.1 20.6 268 112-450 502-799 (873)
8 KOG4222|consensus 99.8 2.2E-20 4.8E-25 192.9 17.3 288 81-446 103-410 (1281)
9 KOG4194|consensus 99.8 1.3E-18 2.8E-23 169.1 18.2 216 69-319 573-800 (873)
10 PHA02785 IL-beta-binding prote 99.6 6.6E-14 1.4E-18 135.8 21.1 203 69-305 81-317 (326)
11 cd05762 Ig8_MLCK Eighth immuno 99.6 1.5E-14 3.3E-19 114.0 13.0 92 361-453 6-97 (98)
12 PHA02826 IL-1 receptor-like pr 99.5 3.4E-13 7.3E-18 122.8 17.0 155 235-436 31-212 (227)
13 PHA02826 IL-1 receptor-like pr 99.5 4.9E-13 1.1E-17 121.8 15.7 168 121-304 29-212 (227)
14 cd05762 Ig8_MLCK Eighth immuno 99.5 1.1E-12 2.3E-17 103.5 11.7 87 119-231 5-91 (98)
15 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 3.1E-12 6.7E-17 98.2 12.3 83 363-446 3-86 (86)
16 cd05735 Ig8_DSCAM Eight immuno 99.4 4.1E-12 8.9E-17 98.1 11.7 83 370-453 1-88 (88)
17 cd05737 Ig_Myomesin_like_C C-t 99.4 5.1E-12 1.1E-16 98.7 11.7 85 361-446 7-92 (92)
18 cd05747 Ig5_Titin_like M5, fif 99.4 7.5E-12 1.6E-16 97.8 12.3 88 113-227 3-90 (92)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.4E-11 3.1E-16 94.5 12.0 80 123-228 4-84 (86)
20 cd04975 Ig4_SCFR_like Fourth i 99.4 1.1E-11 2.4E-16 97.8 11.4 85 362-447 10-100 (101)
21 PF07679 I-set: Immunoglobulin 99.3 9.4E-12 2E-16 97.0 10.5 88 114-228 1-88 (90)
22 cd05892 Ig_Myotilin_C C-termin 99.3 8.2E-12 1.8E-16 92.8 9.5 73 373-446 1-75 (75)
23 cd05737 Ig_Myomesin_like_C C-t 99.3 1.4E-11 2.9E-16 96.3 11.2 84 119-228 6-90 (92)
24 cd05748 Ig_Titin_like Immunogl 99.3 1.5E-11 3.2E-16 91.9 10.9 73 373-446 2-74 (74)
25 cd05747 Ig5_Titin_like M5, fif 99.3 2.3E-11 5.1E-16 95.0 12.0 83 361-444 9-91 (92)
26 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.7E-11 5.8E-16 94.2 12.1 84 362-446 7-90 (90)
27 cd05745 Ig3_Peroxidasin Third 99.3 1.2E-11 2.7E-16 92.2 9.0 74 369-446 1-74 (74)
28 PF07679 I-set: Immunoglobulin 99.3 3.5E-11 7.6E-16 93.7 11.7 85 361-446 6-90 (90)
29 cd05852 Ig5_Contactin-1 Fifth 99.3 1.7E-11 3.6E-16 90.8 9.2 73 370-446 1-73 (73)
30 cd05851 Ig3_Contactin-1 Third 99.3 1.9E-11 4.1E-16 94.4 9.7 85 113-228 1-85 (88)
31 cd05859 Ig4_PDGFR-alpha Fourth 99.3 3.3E-11 7.2E-16 95.3 11.2 84 363-447 11-100 (101)
32 cd05730 Ig3_NCAM-1_like Third 99.3 4.9E-11 1.1E-15 93.9 11.7 84 362-448 10-94 (95)
33 cd05893 Ig_Palladin_C C-termin 99.3 3.1E-11 6.7E-16 89.8 9.8 73 373-446 1-75 (75)
34 cd05851 Ig3_Contactin-1 Third 99.3 2.7E-11 5.9E-16 93.5 9.5 82 361-447 7-88 (88)
35 cd05891 Ig_M-protein_C C-termi 99.3 8.7E-11 1.9E-15 91.6 11.7 85 361-446 7-92 (92)
36 cd05743 Ig_Perlecan_D2_like Im 99.3 6.4E-11 1.4E-15 89.3 10.5 76 370-446 1-76 (78)
37 cd05728 Ig4_Contactin-2-like F 99.2 6.2E-11 1.4E-15 91.0 9.7 81 361-446 5-85 (85)
38 cd04972 Ig_TrkABC_d4 Fourth do 99.2 1.5E-10 3.3E-15 90.0 11.9 84 119-228 5-88 (90)
39 cd05744 Ig_Myotilin_C_like Imm 99.2 9.1E-11 2E-15 87.6 10.1 73 373-446 1-75 (75)
40 cd04975 Ig4_SCFR_like Fourth i 99.2 8.4E-11 1.8E-15 92.8 10.4 82 121-228 10-97 (101)
41 cd05866 Ig1_NCAM-2 First immun 99.2 1.7E-10 3.7E-15 89.3 11.5 84 361-446 6-91 (92)
42 cd05723 Ig4_Neogenin Fourth im 99.2 1.3E-10 2.7E-15 85.9 10.3 71 372-446 1-71 (71)
43 cd05748 Ig_Titin_like Immunogl 99.2 1.4E-10 3E-15 86.6 10.6 63 166-228 10-72 (74)
44 cd05865 Ig1_NCAM-1 First immun 99.2 1.2E-10 2.6E-15 91.2 10.6 84 362-446 7-95 (96)
45 cd05854 Ig6_Contactin-2 Sixth 99.2 1.5E-10 3.2E-15 88.7 10.9 79 371-450 1-85 (85)
46 cd05745 Ig3_Peroxidasin Third 99.2 7.4E-11 1.6E-15 88.0 8.8 72 128-228 1-72 (74)
47 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.2E-10 2.7E-15 92.0 10.4 84 362-446 8-98 (98)
48 cd05891 Ig_M-protein_C C-termi 99.2 1.9E-10 4E-15 89.7 11.1 84 120-229 7-91 (92)
49 cd05868 Ig4_NrCAM Fourth immun 99.2 1.2E-10 2.6E-15 87.2 9.7 74 370-446 1-75 (76)
50 cd04978 Ig4_L1-NrCAM_like Four 99.2 1.1E-10 2.4E-15 87.6 9.4 75 370-446 1-75 (76)
51 cd05852 Ig5_Contactin-1 Fifth 99.2 1.2E-10 2.5E-15 86.3 9.2 71 129-228 1-71 (73)
52 cd05867 Ig4_L1-CAM_like Fourth 99.2 1.8E-10 3.9E-15 86.3 10.5 74 370-446 1-75 (76)
53 cd05857 Ig2_FGFR Second immuno 99.2 1.6E-10 3.5E-15 88.9 10.4 81 365-446 4-85 (85)
54 cd05732 Ig5_NCAM-1_like Fifth 99.2 1.9E-10 4.2E-15 90.7 11.0 84 362-446 8-96 (96)
55 cd05892 Ig_Myotilin_C C-termin 99.2 1.4E-10 3.1E-15 86.1 9.5 63 166-228 9-73 (75)
56 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.9E-10 4.1E-15 91.0 10.8 88 113-228 2-96 (98)
57 cd05869 Ig5_NCAM-1 Fifth immun 99.2 2.3E-10 5.1E-15 90.3 11.2 89 113-228 2-95 (97)
58 cd04969 Ig5_Contactin_like Fif 99.2 1.4E-10 3E-15 86.2 9.2 73 370-446 1-73 (73)
59 cd05732 Ig5_NCAM-1_like Fifth 99.2 2.5E-10 5.4E-15 90.1 11.0 88 113-228 2-94 (96)
60 cd05863 Ig2_VEGFR-3 Second imm 99.2 1.2E-10 2.7E-15 84.0 8.4 65 373-446 1-65 (67)
61 cd05730 Ig3_NCAM-1_like Third 99.2 2.6E-10 5.6E-15 89.7 11.0 81 121-229 10-91 (95)
62 cd05869 Ig5_NCAM-1 Fifth immun 99.2 3.5E-10 7.5E-15 89.3 11.5 81 365-446 12-97 (97)
63 cd05743 Ig_Perlecan_D2_like Im 99.2 1.9E-10 4.2E-15 86.7 9.5 72 129-226 1-72 (78)
64 cd04968 Ig3_Contactin_like Thi 99.2 2.8E-10 6E-15 88.1 10.4 80 362-446 8-87 (88)
65 cd05740 Ig_CEACAM_D4 Fourth im 99.2 2.2E-10 4.8E-15 88.8 9.8 82 360-446 8-90 (91)
66 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 3E-10 6.5E-15 85.9 10.3 71 375-446 3-80 (81)
67 cd05855 Ig_TrkB_d5 Fifth domai 99.2 2.8E-10 6.1E-15 84.9 9.5 70 375-445 3-77 (79)
68 cd05865 Ig1_NCAM-1 First immun 99.2 3.9E-10 8.5E-15 88.2 10.7 82 121-228 7-93 (96)
69 cd05866 Ig1_NCAM-2 First immun 99.2 3.5E-10 7.5E-15 87.6 10.2 77 120-223 6-83 (92)
70 cd05853 Ig6_Contactin-4 Sixth 99.1 2.7E-10 5.9E-15 86.3 8.9 79 371-450 1-85 (85)
71 cd05893 Ig_Palladin_C C-termin 99.1 3.7E-10 8E-15 84.0 9.4 63 166-228 9-73 (75)
72 cd05746 Ig4_Peroxidasin Fourth 99.1 2.1E-10 4.6E-15 84.2 8.0 68 373-444 1-68 (69)
73 cd05773 Ig8_hNephrin_like Eigh 99.1 5.5E-10 1.2E-14 89.9 11.0 82 369-451 22-109 (109)
74 cd04970 Ig6_Contactin_like Six 99.1 4.1E-10 9E-15 86.5 9.8 79 371-450 1-85 (85)
75 cd05728 Ig4_Contactin-2-like F 99.1 4.9E-10 1.1E-14 86.0 9.9 80 119-228 4-83 (85)
76 cd04968 Ig3_Contactin_like Thi 99.1 4.4E-10 9.4E-15 87.0 9.6 80 119-228 6-85 (88)
77 cd05864 Ig2_VEGFR-2 Second imm 99.1 3E-10 6.5E-15 83.1 8.2 67 374-446 2-68 (70)
78 cd05736 Ig2_Follistatin_like S 99.1 5.3E-10 1.2E-14 83.9 9.3 73 374-447 2-74 (76)
79 cd05857 Ig2_FGFR Second immuno 99.1 9.2E-10 2E-14 84.6 10.8 79 124-228 4-83 (85)
80 cd05876 Ig3_L1-CAM Third immun 99.1 4.4E-10 9.5E-15 83.0 8.6 70 373-446 1-70 (71)
81 cd05760 Ig2_PTK7 Second immuno 99.1 5.7E-10 1.2E-14 83.8 9.0 72 373-447 1-75 (77)
82 cd04976 Ig2_VEGFR Second immun 99.1 4.7E-10 1E-14 82.7 8.4 69 373-446 1-69 (71)
83 cd04973 Ig1_FGFR First immunog 99.1 7.2E-10 1.6E-14 83.7 9.3 78 363-446 2-79 (79)
84 cd04969 Ig5_Contactin_like Fif 99.1 7.9E-10 1.7E-14 82.2 9.4 71 129-228 1-71 (73)
85 cd05744 Ig_Myotilin_C_like Imm 99.1 1E-09 2.2E-14 81.9 10.0 63 166-228 9-73 (75)
86 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 9.2E-10 2E-14 80.5 9.3 68 370-444 1-68 (69)
87 cd05867 Ig4_L1-CAM_like Fourth 99.1 8.5E-10 1.8E-14 82.7 9.4 73 129-229 1-74 (76)
88 cd05763 Ig_1 Subgroup of the i 99.1 5.5E-10 1.2E-14 83.5 8.1 71 373-446 1-74 (75)
89 cd04978 Ig4_L1-NrCAM_like Four 99.1 7.5E-10 1.6E-14 83.1 8.9 74 129-229 1-74 (76)
90 cd05868 Ig4_NrCAM Fourth immun 99.1 7.8E-10 1.7E-14 82.8 8.9 74 129-229 1-74 (76)
91 cd05723 Ig4_Neogenin Fourth im 99.1 1.3E-09 2.8E-14 80.4 9.8 60 166-228 10-69 (71)
92 cd05740 Ig_CEACAM_D4 Fourth im 99.1 1E-09 2.2E-14 85.1 9.5 76 119-224 8-83 (91)
93 cd04973 Ig1_FGFR First immunog 99.1 1.1E-09 2.4E-14 82.6 9.5 74 122-226 2-75 (79)
94 cd05856 Ig2_FGFRL1-like Second 99.1 1.4E-09 3E-14 83.0 10.1 79 365-446 4-82 (82)
95 cd05859 Ig4_PDGFR-alpha Fourth 99.1 1.1E-09 2.4E-14 86.6 9.7 80 123-228 12-97 (101)
96 cd05726 Ig4_Robo Fhird immunog 99.1 9.7E-10 2.1E-14 85.4 9.3 77 370-450 1-85 (90)
97 cd05735 Ig8_DSCAM Eight immuno 99.1 1.8E-09 3.8E-14 83.3 10.7 76 129-230 1-81 (88)
98 cd05863 Ig2_VEGFR-3 Second imm 99.1 7.5E-10 1.6E-14 79.9 7.7 54 166-227 9-62 (67)
99 cd05758 Ig5_KIRREL3-like Fifth 99.1 2.6E-09 5.7E-14 84.4 11.4 87 113-227 2-96 (98)
100 cd05738 Ig2_RPTP_IIa_LAR_like 99.0 1.3E-09 2.9E-14 81.1 9.1 70 373-446 1-73 (74)
101 cd05858 Ig3_FGFR-2 Third immun 99.0 1.2E-09 2.7E-14 84.8 9.2 76 370-446 1-89 (90)
102 cd05725 Ig3_Robo Third immunog 99.0 7.7E-10 1.7E-14 81.2 7.4 69 373-446 1-69 (69)
103 cd05746 Ig4_Peroxidasin Fourth 99.0 1.2E-09 2.5E-14 80.2 8.2 59 166-227 9-67 (69)
104 PF00041 fn3: Fibronectin type 99.0 1.3E-09 2.9E-14 83.7 8.9 83 15-98 1-84 (85)
105 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 1.8E-09 3.9E-14 81.6 9.2 63 166-228 9-78 (81)
106 cd05855 Ig_TrkB_d5 Fifth domai 99.0 1.6E-09 3.4E-14 80.9 8.7 63 166-228 9-76 (79)
107 cd05724 Ig2_Robo Second immuno 99.0 1.7E-09 3.7E-14 83.3 9.1 80 362-445 3-85 (86)
108 cd07693 Ig1_Robo First immunog 99.0 3.4E-09 7.4E-14 84.2 10.8 83 113-222 1-90 (100)
109 cd05724 Ig2_Robo Second immuno 99.0 2.1E-09 4.7E-14 82.7 9.3 75 121-224 3-79 (86)
110 cd05731 Ig3_L1-CAM_like Third 99.0 1.7E-09 3.7E-14 79.9 8.3 70 373-446 1-70 (71)
111 cd04977 Ig1_NCAM-1_like First 99.0 4.9E-09 1.1E-13 81.7 11.1 82 362-445 7-91 (92)
112 cd05750 Ig_Pro_neuregulin Immu 99.0 1.7E-09 3.7E-14 80.9 8.2 70 373-443 1-74 (75)
113 cd05758 Ig5_KIRREL3-like Fifth 99.0 5.2E-09 1.1E-13 82.7 11.3 81 363-444 9-97 (98)
114 cd05764 Ig_2 Subgroup of the i 99.0 2.6E-09 5.5E-14 79.7 9.0 73 370-446 1-74 (74)
115 cd05848 Ig1_Contactin-5 First 99.0 3.5E-09 7.7E-14 82.8 10.1 67 369-438 18-85 (94)
116 cd04974 Ig3_FGFR Third immunog 99.0 2.1E-09 4.5E-14 83.5 8.5 76 370-446 1-89 (90)
117 cd05749 Ig2_Tyro3_like Second 99.0 3E-09 6.5E-14 80.2 9.1 70 361-439 4-74 (81)
118 cd05739 Ig3_RPTP_IIa_LAR_like 99.0 3.8E-09 8.3E-14 77.2 9.3 67 129-227 1-67 (69)
119 cd05848 Ig1_Contactin-5 First 99.0 3.7E-09 7.9E-14 82.7 9.8 68 128-223 18-86 (94)
120 cd07693 Ig1_Robo First immunog 99.0 5E-09 1.1E-13 83.2 10.7 84 362-446 8-99 (100)
121 cd05856 Ig2_FGFRL1-like Second 99.0 3.3E-09 7.2E-14 80.8 9.3 77 124-228 4-80 (82)
122 KOG3515|consensus 99.0 3.8E-08 8.2E-13 101.7 19.6 355 70-495 361-734 (741)
123 cd05765 Ig_3 Subgroup of the i 99.0 2.3E-09 4.9E-14 81.6 8.1 75 370-446 1-81 (81)
124 cd05773 Ig8_hNephrin_like Eigh 99.0 8.1E-09 1.8E-13 83.1 11.7 77 128-230 22-104 (109)
125 cd05864 Ig2_VEGFR-2 Second imm 99.0 2.1E-09 4.6E-14 78.6 7.4 57 166-227 9-65 (70)
126 cd05756 Ig1_IL1R_like First im 99.0 2.2E-09 4.7E-14 83.7 7.9 81 363-446 7-94 (94)
127 cd04976 Ig2_VEGFR Second immun 99.0 2.7E-09 5.7E-14 78.7 8.0 59 166-228 9-67 (71)
128 cd05756 Ig1_IL1R_like First im 99.0 2.6E-09 5.6E-14 83.3 8.3 78 123-228 8-92 (94)
129 KOG3515|consensus 99.0 1.5E-08 3.3E-13 104.5 16.1 404 21-494 106-537 (741)
130 cd04977 Ig1_NCAM-1_like First 99.0 9.2E-09 2E-13 80.1 11.1 74 121-221 7-82 (92)
131 cd05850 Ig1_Contactin-2 First 99.0 6.7E-09 1.5E-13 81.2 10.4 78 119-224 6-87 (94)
132 cd05750 Ig_Pro_neuregulin Immu 99.0 4E-09 8.8E-14 78.8 8.6 61 166-226 9-73 (75)
133 cd05850 Ig1_Contactin-2 First 99.0 9.8E-09 2.1E-13 80.3 11.1 77 363-444 9-92 (94)
134 cd05722 Ig1_Neogenin First imm 99.0 5.4E-09 1.2E-13 82.1 9.6 81 362-446 6-95 (95)
135 cd05874 Ig6_NrCAM Sixth immuno 98.9 4.1E-09 8.9E-14 78.9 8.3 68 373-440 1-71 (77)
136 cd05854 Ig6_Contactin-2 Sixth 98.9 9.9E-09 2.1E-13 78.5 10.3 74 130-229 1-80 (85)
137 cd05763 Ig_1 Subgroup of the i 98.9 4.4E-09 9.6E-14 78.6 8.0 61 166-228 9-72 (75)
138 cd05760 Ig2_PTK7 Second immuno 98.9 5.3E-09 1.1E-13 78.5 8.4 57 166-224 9-66 (77)
139 cd05858 Ig3_FGFR-2 Third immun 98.9 5.9E-09 1.3E-13 80.9 8.8 74 129-228 1-87 (90)
140 cd05733 Ig6_L1-CAM_like Sixth 98.9 3.9E-09 8.4E-14 79.2 7.5 66 373-439 1-70 (77)
141 cd05876 Ig3_L1-CAM Third immun 98.9 4.4E-09 9.5E-14 77.6 7.6 60 166-228 9-68 (71)
142 cd05736 Ig2_Follistatin_like S 98.9 6.7E-09 1.4E-13 77.8 8.7 63 166-228 9-71 (76)
143 cd05875 Ig6_hNeurofascin_like 98.9 6.5E-09 1.4E-13 77.9 8.3 65 373-439 1-70 (77)
144 cd05749 Ig2_Tyro3_like Second 98.9 8.7E-09 1.9E-13 77.7 8.9 72 119-224 3-75 (81)
145 cd05771 IgC_Tapasin_R Tapasin- 98.9 2.5E-08 5.4E-13 84.4 12.8 117 281-436 2-132 (139)
146 cd05726 Ig4_Robo Fhird immunog 98.9 8.6E-09 1.9E-13 80.0 9.1 73 129-230 1-81 (90)
147 cd05725 Ig3_Robo Third immunog 98.9 7.6E-09 1.7E-13 75.9 8.3 59 166-228 9-67 (69)
148 cd05733 Ig6_L1-CAM_like Sixth 98.9 5E-09 1.1E-13 78.6 7.4 59 166-224 9-71 (77)
149 cd05742 Ig1_VEGFR_like First i 98.9 7.8E-09 1.7E-13 79.1 8.3 76 370-446 1-83 (84)
150 cd05764 Ig_2 Subgroup of the i 98.9 1.6E-08 3.5E-13 75.3 9.8 71 129-228 1-72 (74)
151 cd05849 Ig1_Contactin-1 First 98.9 1.5E-08 3.2E-13 79.0 9.8 66 129-224 19-86 (93)
152 cd07702 Ig2_VEGFR-1 Second imm 98.9 1E-08 2.2E-13 75.1 8.0 66 374-444 2-68 (72)
153 cd05898 Ig5_KIRREL3 Fifth immu 98.9 3E-08 6.6E-13 77.2 11.0 82 362-444 8-97 (98)
154 cd04974 Ig3_FGFR Third immunog 98.9 7.9E-09 1.7E-13 80.2 7.7 74 129-228 1-87 (90)
155 cd05874 Ig6_NrCAM Sixth immuno 98.9 1.1E-08 2.4E-13 76.6 8.0 59 166-224 9-71 (77)
156 cd04970 Ig6_Contactin_like Six 98.9 2.2E-08 4.8E-13 76.8 9.5 74 130-229 1-80 (85)
157 cd05849 Ig1_Contactin-1 First 98.8 2.2E-08 4.8E-13 78.0 9.4 70 370-444 19-91 (93)
158 cd05895 Ig_Pro_neuregulin-1 Im 98.8 2E-08 4.4E-13 75.2 8.8 70 373-443 1-75 (76)
159 cd07702 Ig2_VEGFR-1 Second imm 98.8 1.3E-08 2.8E-13 74.6 7.4 55 166-224 9-64 (72)
160 cd05875 Ig6_hNeurofascin_like 98.8 1.9E-08 4.1E-13 75.3 8.5 58 166-225 9-72 (77)
161 cd05731 Ig3_L1-CAM_like Third 98.8 1.3E-08 2.9E-13 75.1 7.5 60 166-228 9-68 (71)
162 cd05895 Ig_Pro_neuregulin-1 Im 98.8 2.4E-08 5.3E-13 74.8 9.0 61 166-226 10-74 (76)
163 cd05853 Ig6_Contactin-4 Sixth 98.8 2.2E-08 4.8E-13 75.9 8.6 74 130-229 1-80 (85)
164 cd05738 Ig2_RPTP_IIa_LAR_like 98.8 1.4E-08 3E-13 75.5 7.4 54 166-222 9-64 (74)
165 cd05742 Ig1_VEGFR_like First i 98.8 1.9E-08 4.2E-13 76.9 8.4 74 129-228 1-81 (84)
166 cd05734 Ig7_DSCAM Seventh immu 98.8 2.3E-08 4.9E-13 75.6 8.2 70 373-446 1-79 (79)
167 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 3.6E-08 7.8E-13 75.3 9.4 77 370-447 1-83 (84)
168 cd05729 Ig2_FGFR_like Second i 98.8 5.4E-08 1.2E-12 74.6 10.5 81 365-446 4-85 (85)
169 cd07701 Ig1_Necl-3 First (N-te 98.8 5.4E-08 1.2E-12 76.1 10.2 83 362-446 4-95 (95)
170 cd05882 Ig1_Necl-1 First (N-te 98.8 5E-08 1.1E-12 76.1 9.9 82 362-445 4-94 (95)
171 cd05898 Ig5_KIRREL3 Fifth immu 98.8 8.9E-08 1.9E-12 74.6 10.9 87 113-227 2-96 (98)
172 cd04967 Ig1_Contactin First Ig 98.8 4.8E-08 1E-12 76.0 9.5 69 128-224 18-87 (91)
173 cd05861 Ig1_PDGFR-alphabeta Fr 98.8 4.6E-08 1E-12 74.7 9.2 66 129-220 1-70 (84)
174 cd05765 Ig_3 Subgroup of the i 98.8 4E-08 8.6E-13 74.6 8.6 73 129-228 1-79 (81)
175 cd05722 Ig1_Neogenin First imm 98.8 4.5E-08 9.9E-13 76.8 9.2 77 120-223 5-87 (95)
176 cd07701 Ig1_Necl-3 First (N-te 98.8 7.5E-08 1.6E-12 75.3 10.3 73 121-219 4-85 (95)
177 cd05752 Ig1_FcgammaR_like Frst 98.8 2.9E-08 6.3E-13 74.3 7.4 63 119-218 5-68 (78)
178 cd05873 Ig_Sema4D_like Immunog 98.8 3.8E-08 8.2E-13 74.9 7.7 67 121-218 3-70 (87)
179 cd05754 Ig3_Perlecan_like Thir 98.7 5.1E-08 1.1E-12 74.8 8.3 77 119-226 6-82 (85)
180 cd05882 Ig1_Necl-1 First (N-te 98.7 2E-07 4.4E-12 72.6 11.3 70 122-217 5-83 (95)
181 cd04979 Ig_Semaphorin_C Immuno 98.7 7.2E-08 1.6E-12 74.7 8.5 82 362-447 3-87 (89)
182 cd05754 Ig3_Perlecan_like Thir 98.7 6.9E-08 1.5E-12 74.0 8.1 77 361-444 7-84 (85)
183 cd05729 Ig2_FGFR_like Second i 98.7 2.2E-07 4.8E-12 71.1 10.8 78 124-227 4-82 (85)
184 KOG0196|consensus 98.7 1.2E-06 2.6E-11 89.7 18.1 82 11-93 329-421 (996)
185 cd04979 Ig_Semaphorin_C Immuno 98.7 9E-08 2E-12 74.1 8.0 71 121-220 3-75 (89)
186 cd04967 Ig1_Contactin First Ig 98.7 1.5E-07 3.2E-12 73.2 9.2 68 369-439 18-86 (91)
187 cd05757 Ig2_IL1R_like Second i 98.7 1.3E-07 2.7E-12 73.3 8.7 77 124-225 5-81 (92)
188 cd05752 Ig1_FcgammaR_like Frst 98.7 5.8E-08 1.2E-12 72.7 6.2 62 361-434 6-68 (78)
189 cd05873 Ig_Sema4D_like Immunog 98.7 2.1E-07 4.6E-12 70.8 9.2 68 362-435 3-71 (87)
190 cd07690 Ig1_CD4 First immunogl 98.7 1.2E-07 2.5E-12 73.5 7.9 74 124-223 2-92 (94)
191 cd05727 Ig2_Contactin-2-like S 98.7 7.9E-08 1.7E-12 74.3 6.8 75 120-221 9-85 (96)
192 cd05757 Ig2_IL1R_like Second i 98.6 1.6E-07 3.4E-12 72.8 8.3 77 364-445 4-85 (92)
193 cd05860 Ig4_SCFR Fourth immuno 98.6 5.3E-07 1.1E-11 69.8 10.8 84 363-447 11-100 (101)
194 smart00409 IG Immunoglobulin. 98.6 1.1E-06 2.3E-11 66.9 12.1 82 364-446 3-85 (86)
195 smart00410 IG_like Immunoglobu 98.6 1.1E-06 2.3E-11 66.9 12.1 82 364-446 3-85 (86)
196 cd05845 Ig2_L1-CAM_like Second 98.6 1.7E-07 3.8E-12 72.2 7.4 77 115-220 4-83 (95)
197 cd05734 Ig7_DSCAM Seventh immu 98.6 2.1E-07 4.6E-12 70.2 7.1 54 166-222 9-70 (79)
198 smart00410 IG_like Immunoglobu 98.5 1.6E-06 3.4E-11 66.0 11.7 77 123-225 3-80 (86)
199 smart00409 IG Immunoglobulin. 98.5 1.6E-06 3.4E-11 66.0 11.7 77 123-225 3-80 (86)
200 smart00408 IGc2 Immunoglobulin 98.5 3.9E-07 8.5E-12 64.9 7.1 63 128-220 1-63 (63)
201 cd05717 Ig1_Necl-1-3_like Firs 98.5 1.1E-06 2.3E-11 69.0 10.1 83 362-446 4-95 (95)
202 cd05717 Ig1_Necl-1-3_like Firs 98.5 1.3E-06 2.9E-11 68.4 10.4 72 122-219 5-85 (95)
203 smart00408 IGc2 Immunoglobulin 98.5 5.1E-07 1.1E-11 64.3 6.9 63 369-436 1-63 (63)
204 cd05753 Ig2_FcgammaR_like Seco 98.5 3.5E-07 7.7E-12 69.5 6.3 73 364-445 8-82 (83)
205 cd05771 IgC_Tapasin_R Tapasin- 98.5 2.3E-06 4.9E-11 72.4 11.8 116 71-219 2-131 (139)
206 PHA03376 BARF1; Provisional 98.5 2.2E-06 4.8E-11 72.6 11.1 129 123-265 20-160 (221)
207 cd05862 Ig1_VEGFR First immuno 98.5 1E-06 2.2E-11 67.5 8.2 77 370-447 1-85 (86)
208 cd05881 Ig1_Necl-2 First (N-te 98.4 3E-06 6.6E-11 65.6 10.8 78 122-217 5-83 (95)
209 PF00047 ig: Immunoglobulin do 98.4 6.8E-07 1.5E-11 64.3 6.7 61 129-215 1-64 (64)
210 cd07690 Ig1_CD4 First immunogl 98.4 7.3E-07 1.6E-11 69.1 7.2 72 365-437 2-90 (94)
211 cd05727 Ig2_Contactin-2-like S 98.4 6.6E-07 1.4E-11 69.2 6.4 74 362-438 10-86 (96)
212 cd05753 Ig2_FcgammaR_like Seco 98.4 9.4E-07 2E-11 67.2 7.0 65 124-221 9-73 (83)
213 cd05871 Ig_Semaphorin_classIII 98.4 1.9E-06 4.2E-11 66.6 8.4 79 364-448 5-90 (91)
214 PF13895 Ig_2: Immunoglobulin 98.4 2.1E-06 4.6E-11 64.7 8.5 71 365-446 9-80 (80)
215 cd05862 Ig1_VEGFR First immuno 98.4 1.7E-06 3.6E-11 66.3 7.7 72 129-226 1-80 (86)
216 cd05871 Ig_Semaphorin_classIII 98.3 2.4E-06 5.2E-11 66.1 8.1 69 123-222 5-80 (91)
217 PF13895 Ig_2: Immunoglobulin 98.3 3.1E-06 6.7E-11 63.8 7.7 61 124-220 9-69 (80)
218 PF00047 ig: Immunoglobulin do 98.3 2.8E-06 6E-11 61.0 7.0 61 370-431 1-64 (64)
219 cd05713 Ig_MOG_like Immunoglob 98.3 6.6E-06 1.4E-10 65.2 9.6 86 129-226 1-95 (100)
220 cd05896 Ig1_IL1RAPL-1_like Fir 98.3 4.9E-06 1.1E-10 64.6 7.8 90 122-226 8-100 (104)
221 cd05881 Ig1_Necl-2 First (N-te 98.2 1.7E-05 3.8E-10 61.4 10.7 72 362-434 4-84 (95)
222 KOG0196|consensus 98.2 1.1E-05 2.4E-10 82.9 12.0 103 3-106 432-534 (996)
223 cd05845 Ig2_L1-CAM_like Second 98.2 4.3E-06 9.2E-11 64.5 6.8 73 361-437 9-84 (95)
224 cd05860 Ig4_SCFR Fourth immuno 98.2 1.8E-05 3.9E-10 61.3 9.9 81 122-228 11-97 (101)
225 cd00063 FN3 Fibronectin type 3 98.2 2.6E-05 5.7E-10 59.9 11.2 85 14-99 1-86 (93)
226 cd04983 IgV_TCR_alpha_like Imm 98.2 9.4E-06 2E-10 65.4 8.6 75 119-219 3-93 (109)
227 cd05897 Ig2_IL1R2_like Second 98.2 6.5E-06 1.4E-10 63.7 6.9 76 125-222 6-81 (95)
228 cd05872 Ig_Sema4B_like Immunog 98.2 5E-06 1.1E-10 62.8 6.1 64 122-216 4-67 (85)
229 cd05897 Ig2_IL1R2_like Second 98.1 9.2E-06 2E-10 62.9 7.4 72 365-438 5-81 (95)
230 cd05885 Ig2_Necl-4 Second immu 98.1 7.7E-06 1.7E-10 60.9 6.0 57 166-222 11-69 (80)
231 PF13927 Ig_3: Immunoglobulin 98.1 4.9E-06 1.1E-10 61.7 5.0 57 132-217 18-75 (75)
232 cd05759 Ig2_KIRREL3-like Secon 98.1 2.9E-05 6.3E-10 58.9 9.3 70 373-443 2-77 (82)
233 cd05872 Ig_Sema4B_like Immunog 98.1 2.7E-05 5.8E-10 58.9 8.5 76 363-445 4-79 (85)
234 cd00099 IgV Immunoglobulin var 98.0 1.9E-05 4.1E-10 63.1 7.6 83 125-220 2-91 (105)
235 cd05885 Ig2_Necl-4 Second immu 98.0 2.3E-05 5.1E-10 58.3 7.1 64 373-438 2-69 (80)
236 cd05751 Ig1_LILRB1_like First 98.0 1.5E-05 3.3E-10 61.8 6.0 65 124-218 11-75 (91)
237 cd05896 Ig1_IL1RAPL-1_like Fir 98.0 3.1E-05 6.7E-10 60.2 7.4 83 363-446 8-104 (104)
238 cd05899 IgV_TCR_beta Immunoglo 98.0 3.9E-05 8.4E-10 61.9 8.0 73 119-218 3-94 (110)
239 cd04983 IgV_TCR_alpha_like Imm 97.9 5.8E-05 1.3E-09 60.8 8.8 74 362-436 5-94 (109)
240 cd05751 Ig1_LILRB1_like First 97.9 2.6E-05 5.7E-10 60.4 6.5 66 364-434 10-75 (91)
241 cd05900 Ig_Aggrecan Immunoglob 97.9 7.4E-05 1.6E-09 60.0 9.2 79 369-448 1-110 (112)
242 cd04980 IgV_L_kappa Immunoglob 97.9 3.9E-05 8.5E-10 61.4 7.4 86 119-217 5-92 (106)
243 cd05714 Ig_CSPGs_LP Immunoglob 97.9 0.00011 2.5E-09 58.7 9.7 79 369-448 1-104 (106)
244 cd05879 Ig_P0 Immunoglobulin ( 97.9 0.00011 2.4E-09 59.5 9.6 90 121-220 5-104 (116)
245 cd05714 Ig_CSPGs_LP Immunoglob 97.9 0.00013 2.9E-09 58.3 10.0 36 192-227 64-99 (106)
246 cd05880 Ig_EVA1 Immunoglobulin 97.9 8.4E-05 1.8E-09 60.3 8.7 91 120-220 4-103 (115)
247 cd05900 Ig_Aggrecan Immunoglob 97.9 9.7E-05 2.1E-09 59.3 8.8 40 186-225 61-103 (112)
248 cd04982 IgV_TCR_gamma Immunogl 97.8 7.3E-05 1.6E-09 60.9 7.8 87 119-217 3-98 (116)
249 cd05877 Ig_LP_like Immunoglobu 97.8 0.00015 3.2E-09 58.1 9.4 79 369-448 1-104 (106)
250 cd05899 IgV_TCR_beta Immunoglo 97.8 0.0001 2.2E-09 59.5 8.4 72 362-435 5-95 (110)
251 smart00060 FN3 Fibronectin typ 97.8 0.00025 5.5E-09 52.7 10.1 76 15-94 2-81 (83)
252 cd05759 Ig2_KIRREL3-like Secon 97.8 0.00013 2.8E-09 55.3 8.4 55 166-220 11-70 (82)
253 cd05902 Ig_Neurocan Immunoglob 97.8 0.0002 4.4E-09 57.2 9.6 91 129-226 2-102 (110)
254 cd00099 IgV Immunoglobulin var 97.8 9.5E-05 2.1E-09 59.0 7.9 70 366-436 2-91 (105)
255 cd05878 Ig_Aggrecan_like Immun 97.8 0.00035 7.5E-09 56.2 11.1 95 129-227 2-103 (110)
256 cd05718 Ig1_PVR_like First imm 97.8 0.0002 4.4E-09 56.3 9.6 34 194-227 60-94 (98)
257 cd05711 Ig_FcalphaRI Immunoglo 97.8 8.4E-05 1.8E-09 57.9 6.9 68 123-217 9-76 (94)
258 cd05877 Ig_LP_like Immunoglobu 97.8 0.00018 3.9E-09 57.6 9.1 36 193-228 65-100 (106)
259 cd05713 Ig_MOG_like Immunoglob 97.8 0.0002 4.3E-09 56.6 9.2 76 370-446 1-99 (100)
260 KOG0613|consensus 97.8 0.0005 1.1E-08 74.9 14.7 342 15-437 141-518 (1205)
261 cd04984 IgV_L_lambda Immunoglo 97.8 9.8E-05 2.1E-09 58.1 7.1 80 125-217 2-84 (98)
262 cd04980 IgV_L_kappa Immunoglob 97.8 0.00014 3E-09 58.2 8.0 72 362-434 7-93 (106)
263 cd05774 Ig_CEACAM_D1 First imm 97.7 0.00016 3.6E-09 57.3 8.1 26 195-220 69-94 (105)
264 cd05741 Ig_CEACAM_D1_like Firs 97.7 0.00017 3.6E-09 56.0 7.8 27 196-222 57-83 (92)
265 cd05775 Ig_SLAM-CD84_like_N N- 97.7 0.00017 3.6E-09 56.6 7.7 32 191-222 56-87 (97)
266 cd05901 Ig_Versican Immunoglob 97.7 0.00094 2E-08 53.6 11.5 95 129-227 2-110 (117)
267 cd05715 Ig_P0-like Immunoglobu 97.7 0.00027 5.8E-09 57.6 8.6 91 120-220 4-104 (116)
268 cd05718 Ig1_PVR_like First imm 97.7 0.00037 8.1E-09 54.8 9.1 75 371-446 1-97 (98)
269 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00032 7E-09 57.3 9.0 92 119-218 4-102 (119)
270 cd04982 IgV_TCR_gamma Immunogl 97.6 0.0003 6.6E-09 57.3 8.3 71 362-433 5-98 (116)
271 cd05878 Ig_Aggrecan_like Immun 97.6 0.0005 1.1E-08 55.3 9.2 79 369-448 1-108 (110)
272 cd05880 Ig_EVA1 Immunoglobulin 97.6 0.0005 1.1E-08 55.8 9.2 75 362-437 5-104 (115)
273 PF13927 Ig_3: Immunoglobulin 97.6 0.00013 2.8E-09 53.9 5.3 62 368-433 13-75 (75)
274 cd04984 IgV_L_lambda Immunoglo 97.6 0.00032 6.9E-09 55.2 7.5 68 366-434 2-85 (98)
275 cd05879 Ig_P0 Immunoglobulin ( 97.6 0.00063 1.4E-08 55.1 9.3 75 362-437 5-105 (116)
276 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.00027 5.8E-09 55.0 6.5 70 362-433 7-76 (94)
277 cd05741 Ig_CEACAM_D1_like Firs 97.5 0.00044 9.6E-09 53.6 7.4 64 370-437 1-82 (92)
278 PHA02987 Ig domain OX-2-like p 97.5 0.00036 7.8E-09 59.9 7.1 71 122-217 23-106 (189)
279 cd07706 IgV_TCR_delta Immunogl 97.5 0.00054 1.2E-08 55.8 7.7 85 120-217 5-93 (116)
280 cd07694 Ig2_CD4 Second immunog 97.5 0.001 2.2E-08 49.7 8.2 72 125-228 10-83 (88)
281 cd05775 Ig_SLAM-CD84_like_N N- 97.4 0.00054 1.2E-08 53.7 7.3 78 368-446 2-96 (97)
282 cd05774 Ig_CEACAM_D1 First imm 97.4 0.00077 1.7E-08 53.4 7.7 77 365-445 8-104 (105)
283 cd05716 Ig_pIgR Immunoglobulin 97.4 0.00055 1.2E-08 53.8 6.8 81 124-218 2-86 (98)
284 cd05888 Ig1_Nectin-4_like Frst 97.4 0.0012 2.6E-08 52.0 8.2 30 193-222 61-91 (100)
285 cd05883 Ig2_Necl-2 Second immu 97.3 0.00095 2.1E-08 49.9 7.1 54 166-219 11-67 (82)
286 cd05886 Ig1_Nectin-1_like Firs 97.3 0.0018 3.9E-08 50.7 9.0 33 194-226 61-94 (99)
287 cd05715 Ig_P0-like Immunoglobu 97.3 0.0014 3.1E-08 53.3 8.7 75 362-437 5-105 (116)
288 cd05888 Ig1_Nectin-4_like Frst 97.3 0.0015 3.2E-08 51.5 8.0 74 372-446 2-99 (100)
289 PF07686 V-set: Immunoglobulin 97.3 0.0027 5.9E-08 51.1 9.8 84 362-446 8-114 (114)
290 cd00098 IgC Immunoglobulin Con 97.3 0.0013 2.7E-08 51.4 7.5 69 368-437 11-87 (95)
291 cd05902 Ig_Neurocan Immunoglob 97.2 0.0026 5.6E-08 50.9 9.0 78 370-448 2-108 (110)
292 cd05886 Ig1_Nectin-1_like Firs 97.2 0.0034 7.4E-08 49.2 9.5 74 372-446 2-98 (99)
293 cd07700 IgV_CD8_beta Immunoglo 97.2 0.0012 2.6E-08 52.8 7.1 32 185-216 59-92 (107)
294 cd07705 Ig2_Necl-1 Second immu 97.2 0.0023 5.1E-08 48.4 8.0 54 166-220 11-70 (83)
295 cd05901 Ig_Versican Immunoglob 97.2 0.005 1.1E-07 49.5 10.1 39 409-448 77-115 (117)
296 cd05761 Ig2_Necl-1-4_like Seco 97.2 0.0017 3.7E-08 49.1 7.0 56 166-221 11-70 (82)
297 cd05716 Ig_pIgR Immunoglobulin 97.2 0.0026 5.6E-08 50.0 8.2 70 365-435 2-87 (98)
298 cd05720 Ig_CD8_alpha Immunoglo 97.1 0.0015 3.3E-08 51.9 6.7 78 126-217 3-90 (104)
299 PF00041 fn3: Fibronectin type 97.1 0.0027 5.8E-08 48.1 7.9 79 325-440 6-84 (85)
300 cd07694 Ig2_CD4 Second immunog 97.1 0.0051 1.1E-07 46.1 8.8 76 365-447 9-86 (88)
301 cd05846 Ig1_MRC-OX-2_like Firs 97.1 0.0027 5.9E-08 49.7 8.0 76 370-446 1-96 (97)
302 cd07706 IgV_TCR_delta Immunogl 97.1 0.0024 5.1E-08 52.0 7.8 72 362-434 6-94 (116)
303 cd05755 Ig2_ICAM-1_like Second 97.1 0.0019 4.2E-08 50.4 6.7 69 126-220 13-86 (100)
304 cd05846 Ig1_MRC-OX-2_like Firs 97.1 0.0031 6.6E-08 49.4 8.0 25 193-217 58-82 (97)
305 cd05887 Ig1_Nectin-3_like Firs 97.1 0.0049 1.1E-07 47.9 8.9 74 372-446 2-95 (96)
306 PF07686 V-set: Immunoglobulin 97.1 0.0027 5.9E-08 51.1 8.0 86 120-218 7-101 (114)
307 cd05761 Ig2_Necl-1-4_like Seco 97.1 0.0041 9E-08 46.9 8.3 63 373-437 2-70 (82)
308 cd07705 Ig2_Necl-1 Second immu 97.1 0.0065 1.4E-07 45.9 9.3 63 373-437 2-71 (83)
309 cd05884 Ig2_Necl-3 Second immu 97.1 0.0033 7.2E-08 47.5 7.5 54 166-219 11-69 (83)
310 cd00098 IgC Immunoglobulin Con 97.0 0.0023 4.9E-08 49.9 6.7 68 127-220 11-86 (95)
311 cd05887 Ig1_Nectin-3_like Firs 97.0 0.0069 1.5E-07 47.1 9.1 36 192-227 56-92 (96)
312 cd04981 IgV_H Immunoglobulin ( 97.0 0.0033 7.1E-08 51.2 7.7 86 120-217 3-97 (117)
313 PHA02987 Ig domain OX-2-like p 97.0 0.0051 1.1E-07 53.0 9.0 87 362-449 22-124 (189)
314 cd00096 Ig Immunoglobulin doma 97.0 0.004 8.6E-08 44.5 7.3 54 166-219 9-66 (74)
315 cd05889 Ig1_DNAM-1_like First 96.9 0.01 2.3E-07 46.1 9.4 33 194-226 58-91 (96)
316 cd05883 Ig2_Necl-2 Second immu 96.9 0.01 2.3E-07 44.4 8.8 73 373-446 2-79 (82)
317 KOG4367|consensus 96.9 0.0016 3.4E-08 62.2 5.4 110 25-139 450-560 (699)
318 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.0042 9.2E-08 49.3 7.1 66 367-433 3-90 (104)
319 cd05712 Ig_Siglec_N Immunoglob 96.8 0.0078 1.7E-07 49.1 8.7 72 362-434 6-102 (119)
320 cd00096 Ig Immunoglobulin doma 96.8 0.0063 1.4E-07 43.4 7.2 62 374-436 2-67 (74)
321 cd07700 IgV_CD8_beta Immunoglo 96.8 0.0059 1.3E-07 48.8 7.5 68 366-434 2-94 (107)
322 cd05884 Ig2_Necl-3 Second immu 96.8 0.0083 1.8E-07 45.3 7.6 64 373-437 2-71 (83)
323 cd05755 Ig2_ICAM-1_like Second 96.7 0.0059 1.3E-07 47.6 6.6 69 366-437 12-87 (100)
324 smart00406 IGv Immunoglobulin 96.6 0.0055 1.2E-07 45.8 5.8 30 185-214 49-80 (81)
325 PF08205 C2-set_2: CD80-like C 96.5 0.016 3.4E-07 44.4 8.0 67 129-220 14-85 (89)
326 KOG0613|consensus 96.5 0.01 2.2E-07 65.1 9.1 82 364-446 343-427 (1205)
327 cd05772 IgC_SIRP Signal-regula 96.4 0.039 8.5E-07 44.2 9.7 68 125-219 17-92 (111)
328 PHA03376 BARF1; Provisional 96.3 0.04 8.7E-07 47.4 9.3 71 364-435 20-110 (221)
329 TIGR00864 PCC polycystin catio 96.3 4.4 9.5E-05 49.5 33.9 279 79-449 1752-2041(2740)
330 cd04981 IgV_H Immunoglobulin ( 96.2 0.028 6E-07 45.7 8.1 71 362-433 4-97 (117)
331 cd07692 Ig_CD3_epsilon Immunog 96.2 0.011 2.4E-07 41.5 4.7 51 127-217 5-55 (65)
332 cd05772 IgC_SIRP Signal-regula 96.2 0.07 1.5E-06 42.7 10.0 71 366-438 17-95 (111)
333 PF01108 Tissue_fac: Tissue fa 96.0 0.068 1.5E-06 42.6 9.2 79 11-92 19-101 (107)
334 cd05889 Ig1_DNAM-1_like First 95.9 0.072 1.6E-06 41.4 8.8 35 409-444 58-93 (96)
335 cd07698 IgC_MHC_I_alpha3 Class 95.8 0.063 1.4E-06 41.5 8.1 65 129-219 14-83 (93)
336 KOG4258|consensus 95.7 0.089 1.9E-06 55.4 10.8 156 325-496 494-655 (1025)
337 PF08205 C2-set_2: CD80-like C 95.7 0.085 1.8E-06 40.3 8.5 67 370-437 14-86 (89)
338 smart00406 IGv Immunoglobulin 95.7 0.035 7.7E-07 41.3 6.1 57 373-430 2-80 (81)
339 cd07699 IgC_L Immunoglobulin C 95.5 0.029 6.2E-07 44.1 5.1 33 126-183 14-47 (100)
340 cd05721 IgV_CTLA-4 Immunoglobu 95.5 0.1 2.3E-06 41.5 8.1 80 122-216 6-94 (115)
341 cd07698 IgC_MHC_I_alpha3 Class 95.4 0.16 3.4E-06 39.3 8.9 66 370-436 14-84 (93)
342 smart00407 IGc1 Immunoglobulin 95.4 0.094 2E-06 38.7 7.2 52 167-218 12-70 (75)
343 cd05766 IgC_MHC_II_beta Class 95.4 0.15 3.3E-06 39.4 8.7 31 128-183 13-44 (94)
344 smart00407 IGc1 Immunoglobulin 95.2 0.14 3E-06 37.8 7.7 62 373-435 2-71 (75)
345 PF09294 Interfer-bind: Interf 95.1 0.19 4.2E-06 39.8 8.9 73 15-90 4-87 (106)
346 PHA02982 hypothetical protein; 95.0 0.064 1.4E-06 46.7 6.1 76 122-222 32-126 (251)
347 cd05766 IgC_MHC_II_beta Class 95.0 0.24 5.3E-06 38.3 8.9 68 368-436 12-84 (94)
348 PF07654 C1-set: Immunoglobuli 94.9 0.29 6.2E-06 36.8 8.8 64 370-437 8-79 (83)
349 cd07699 IgC_L Immunoglobulin C 94.7 0.22 4.9E-06 39.0 8.0 68 368-436 15-90 (100)
350 cd05719 Ig2_PVR_like Second im 94.7 0.26 5.6E-06 38.2 8.2 54 166-220 27-83 (95)
351 cd05770 IgC_beta2m Class I maj 94.3 0.32 6.9E-06 37.5 7.9 65 369-435 14-83 (93)
352 cd05767 IgC_MHC_II_alpha Class 94.2 0.31 6.7E-06 37.7 7.7 30 129-183 15-45 (94)
353 cd05768 IgC_CH4 CH4 domain (fo 94.1 0.091 2E-06 41.4 4.7 31 127-183 14-46 (102)
354 PF07654 C1-set: Immunoglobuli 94.1 0.45 9.8E-06 35.7 8.4 65 128-220 7-78 (83)
355 cd07704 Ig2_Nectin-3-4_like Se 94.1 0.22 4.7E-06 38.6 6.5 71 122-218 9-83 (97)
356 cd07703 Ig2_Nectin-2_like Seco 94.1 0.26 5.7E-06 38.1 7.0 54 166-220 27-83 (95)
357 KOG4258|consensus 94.0 0.3 6.4E-06 51.7 9.2 134 18-162 492-648 (1025)
358 cd05770 IgC_beta2m Class I maj 94.0 0.5 1.1E-05 36.4 8.5 29 128-182 14-44 (93)
359 cd07696 IgC_CH3 CH3 domain (th 94.0 0.45 9.7E-06 37.0 8.2 28 367-394 11-41 (96)
360 cd07697 IgC_TCR_gamma T cell r 93.9 0.18 3.9E-06 39.1 5.9 30 128-183 15-46 (96)
361 cd05847 IgC_CH2_IgE CH2 domain 93.9 0.56 1.2E-05 36.3 8.6 68 369-437 13-88 (94)
362 cd05769 IgC_TCR_beta T cell re 93.9 0.17 3.7E-06 40.7 5.8 33 127-184 16-49 (115)
363 cd05767 IgC_MHC_II_alpha Class 93.8 0.71 1.5E-05 35.7 9.0 63 369-435 14-84 (94)
364 PF09067 EpoR_lig-bind: Erythr 93.7 0.28 6.1E-06 38.6 6.7 82 12-95 6-95 (104)
365 cd05719 Ig2_PVR_like Second im 93.7 0.61 1.3E-05 36.2 8.5 64 371-438 16-85 (95)
366 PHA02633 hypothetical protein; 93.6 0.18 4E-06 34.8 4.7 35 194-228 16-50 (63)
367 cd05768 IgC_CH4 CH4 domain (fo 93.5 0.39 8.4E-06 37.8 7.2 67 368-435 14-91 (102)
368 cd05847 IgC_CH2_IgE CH2 domain 93.4 0.36 7.9E-06 37.3 6.8 68 128-220 13-87 (94)
369 cd07691 Ig_CD3_gamma_delta Imm 93.1 0.34 7.3E-06 34.4 5.5 37 171-217 18-54 (69)
370 PF11465 Receptor_2B4: Natural 93.0 0.53 1.1E-05 36.6 6.9 63 159-223 29-98 (108)
371 cd07697 IgC_TCR_gamma T cell r 92.7 0.66 1.4E-05 36.0 7.3 30 369-398 15-46 (96)
372 PHA02633 hypothetical protein; 92.7 0.26 5.6E-06 34.1 4.3 41 278-318 16-56 (63)
373 cd07703 Ig2_Nectin-2_like Seco 92.5 0.76 1.6E-05 35.6 7.4 69 371-441 16-88 (95)
374 cd07691 Ig_CD3_gamma_delta Imm 92.5 0.6 1.3E-05 33.2 6.0 49 370-433 6-54 (69)
375 cd07692 Ig_CD3_epsilon Immunog 92.3 0.39 8.4E-06 33.9 4.9 52 368-434 5-56 (65)
376 KOG4802|consensus 91.9 0.5 1.1E-05 45.7 6.8 86 11-98 250-342 (516)
377 TIGR00864 PCC polycystin catio 91.8 42 0.00091 41.7 29.2 111 291-449 1670-1780(2740)
378 PF07354 Sp38: Zona-pellucida- 91.3 1 2.2E-05 41.1 7.8 49 167-218 10-59 (271)
379 PHA02982 hypothetical protein; 91.2 0.56 1.2E-05 41.1 5.7 75 363-438 32-126 (251)
380 PHA03270 envelope glycoprotein 91.1 7.2 0.00016 38.4 13.7 79 279-397 181-264 (466)
381 cd05769 IgC_TCR_beta T cell re 91.0 2.1 4.6E-05 34.5 8.6 69 369-438 17-95 (115)
382 PF10179 DUF2369: Uncharacteri 90.6 16 0.00034 34.8 21.3 194 275-495 10-216 (300)
383 cd07696 IgC_CH3 CH3 domain (th 90.5 1.6 3.4E-05 33.9 7.3 14 126-139 11-24 (96)
384 KOG1480|consensus 90.5 0.15 3.3E-06 53.1 2.0 112 79-223 99-210 (909)
385 PHA03273 envelope glycoprotein 90.4 11 0.00024 37.6 14.3 116 280-435 198-325 (486)
386 cd07689 Ig2_VCAM-1 Second immu 90.0 1.5 3.3E-05 33.9 6.6 66 126-218 12-85 (99)
387 cd07704 Ig2_Nectin-3-4_like Se 89.9 3.7 8E-05 31.8 8.8 68 363-436 9-85 (97)
388 PF09240 IL6Ra-bind: Interleuk 89.9 5.1 0.00011 31.2 9.9 78 16-95 1-86 (99)
389 cd04986 IgC_CH2 CH2 domain (se 89.9 0.59 1.3E-05 36.4 4.4 29 126-180 16-47 (99)
390 cd07689 Ig2_VCAM-1 Second immu 89.9 1.2 2.6E-05 34.4 6.0 69 366-436 11-87 (99)
391 PHA03269 envelope glycoprotein 89.7 11 0.00023 37.9 13.6 80 278-397 287-372 (566)
392 PF06328 Lep_receptor_Ig: Ig-l 89.7 2 4.3E-05 32.8 7.1 69 124-215 13-81 (89)
393 cd04985 IgC_CH1 CH1 domain (fi 89.4 3.4 7.3E-05 32.0 8.4 65 369-435 15-87 (95)
394 smart00060 FN3 Fibronectin typ 89.3 5.4 0.00012 28.4 9.5 26 410-436 56-81 (83)
395 cd00063 FN3 Fibronectin type 3 89.2 5.3 0.00012 29.4 9.6 29 409-438 55-83 (93)
396 PF08204 V-set_CD47: CD47 immu 88.7 1.9 4E-05 35.3 6.7 76 128-225 26-114 (130)
397 cd05721 IgV_CTLA-4 Immunoglobu 87.9 3.7 8E-05 32.8 7.7 67 364-431 7-93 (115)
398 PHA03271 envelope glycoprotein 87.9 29 0.00064 34.2 17.2 121 276-436 203-336 (490)
399 PHA02914 Immunoglobulin-like d 86.6 34 0.00073 33.5 20.9 77 276-396 342-421 (500)
400 KOG4597|consensus 86.4 2.6 5.7E-05 41.8 7.3 83 119-227 201-288 (560)
401 PHA03271 envelope glycoprotein 86.3 14 0.0003 36.3 11.9 87 68-183 205-291 (490)
402 cd04985 IgC_CH1 CH1 domain (fi 85.7 3.5 7.5E-05 31.9 6.5 27 128-180 15-43 (95)
403 PF08204 V-set_CD47: CD47 immu 85.7 1.9 4.2E-05 35.2 5.2 79 367-447 24-120 (130)
404 PHA03270 envelope glycoprotein 85.4 41 0.00089 33.4 23.3 70 196-265 182-258 (466)
405 KOG4802|consensus 84.9 11 0.00024 36.9 10.4 74 24-103 156-242 (516)
406 cd04986 IgC_CH2 CH2 domain (se 84.8 5.7 0.00012 31.0 7.2 68 367-436 16-90 (99)
407 PHA03269 envelope glycoprotein 82.3 60 0.0013 32.8 17.8 72 194-265 287-366 (566)
408 KOG1480|consensus 81.3 1.2 2.6E-05 46.8 2.8 70 235-306 138-209 (909)
409 PHA02914 Immunoglobulin-like d 80.9 6.4 0.00014 38.2 7.2 25 195-219 345-369 (500)
410 PHA03042 CD47-like protein; Pr 80.4 9.1 0.0002 35.3 7.7 72 367-446 28-104 (286)
411 PF07354 Sp38: Zona-pellucida- 79.5 3.1 6.8E-05 38.1 4.5 49 383-435 11-60 (271)
412 PHA03042 CD47-like protein; Pr 79.2 13 0.00028 34.3 8.4 65 129-221 31-95 (286)
413 KOG4152|consensus 78.3 3.9 8.4E-05 41.0 5.1 69 416-487 652-724 (830)
414 PLN02533 probable purple acid 76.1 13 0.00028 37.8 8.4 71 12-88 39-121 (427)
415 COG4733 Phage-related protein, 74.7 30 0.00064 37.4 10.5 56 58-116 650-705 (952)
416 PHA03273 envelope glycoprotein 73.1 1.1E+02 0.0024 30.9 19.2 70 196-265 198-274 (486)
417 PF07495 Y_Y_Y: Y_Y_Y domain; 72.9 9.3 0.0002 26.9 4.8 45 48-97 10-55 (66)
418 TIGR00868 hCaCC calcium-activa 72.5 13 0.00028 41.0 7.7 82 13-95 755-854 (863)
419 PF11465 Receptor_2B4: Natural 69.7 18 0.00038 28.4 5.8 40 275-314 66-106 (108)
420 PHA03282 envelope glycoprotein 69.7 1.3E+02 0.0028 30.4 14.0 24 279-302 123-146 (540)
421 KOG4367|consensus 69.3 8.5 0.00018 37.6 4.9 34 462-496 450-483 (699)
422 PF14292 SusE: SusE outer memb 68.7 52 0.0011 26.6 9.0 64 26-89 43-120 (122)
423 PHA03283 envelope glycoprotein 68.5 1.4E+02 0.0031 30.6 13.2 40 277-316 131-170 (542)
424 KOG4597|consensus 68.5 5.3 0.00012 39.7 3.4 85 362-447 203-292 (560)
425 KOG3632|consensus 63.7 25 0.00055 38.5 7.4 89 9-99 764-859 (1335)
426 PF06328 Lep_receptor_Ig: Ig-l 63.4 46 0.001 25.3 7.0 66 362-430 10-80 (89)
427 PHA03052 Hypothetical protein; 61.7 42 0.00091 23.8 5.8 38 122-182 5-42 (69)
428 KOG1948|consensus 60.6 2.2E+02 0.0048 31.3 13.4 95 40-139 916-1010(1165)
429 PF06832 BiPBP_C: Penicillin-B 60.1 68 0.0015 24.2 7.7 56 372-440 31-86 (89)
430 PHA03282 envelope glycoprotein 58.1 1.4E+02 0.0031 30.1 10.9 24 278-301 331-354 (540)
431 PHA03052 Hypothetical protein; 57.8 37 0.00079 24.1 5.0 34 363-396 5-41 (69)
432 PHA03283 envelope glycoprotein 53.1 2.8E+02 0.006 28.6 13.6 28 193-220 131-158 (542)
433 cd05890 Ig2_Nectin-1_like Seco 52.8 95 0.0021 23.9 6.9 55 246-302 25-86 (98)
434 KOG4806|consensus 51.7 2.4E+02 0.0051 27.4 14.3 74 417-496 290-370 (454)
435 PHA03286 envelope glycoprotein 51.7 2.7E+02 0.0059 28.1 12.9 35 192-226 123-157 (492)
436 PF05790 C2-set: Immunoglobuli 51.3 99 0.0021 23.0 8.2 33 413-446 45-78 (80)
437 COG3401 Fibronectin type 3 dom 48.7 2.6E+02 0.0057 27.1 13.7 76 12-94 163-239 (343)
438 PF10179 DUF2369: Uncharacteri 46.1 2.8E+02 0.006 26.6 21.2 26 68-93 13-38 (300)
439 KOG4228|consensus 42.4 49 0.0011 37.1 5.7 48 294-342 1-48 (1087)
440 KOG4152|consensus 39.7 4.5E+02 0.0097 27.2 26.4 69 285-353 652-722 (830)
441 PF02480 Herpes_gE: Alphaherpe 38.4 56 0.0012 33.3 5.2 28 195-222 88-115 (439)
442 PF03921 ICAM_N: Intercellular 37.9 1.8E+02 0.004 22.2 10.5 82 361-451 9-90 (91)
443 COG3979 Uncharacterized protei 37.6 1E+02 0.0022 27.1 6.0 113 13-136 4-119 (181)
444 PHA03112 IL-18 binding protein 37.6 1.4E+02 0.003 24.9 6.3 27 367-393 35-63 (141)
445 PF06832 BiPBP_C: Penicillin-B 37.5 1.8E+02 0.0038 21.9 8.6 46 166-223 40-85 (89)
446 PF05790 C2-set: Immunoglobuli 36.7 1.8E+02 0.0038 21.6 8.2 38 169-216 26-63 (80)
447 PHA02865 MHC-like TNF binding 34.5 1.7E+02 0.0037 28.5 7.4 9 131-139 216-224 (338)
448 PHA02865 MHC-like TNF binding 33.8 1.2E+02 0.0025 29.6 6.1 21 372-392 216-238 (338)
449 TIGR03000 plancto_dom_1 Planct 33.4 1.2E+02 0.0026 22.2 4.7 25 67-91 26-50 (75)
450 PHA03189 UL14 tegument protein 32.1 4.6E+02 0.0099 25.0 10.3 17 123-139 61-77 (348)
451 PHA03286 envelope glycoprotein 31.8 5E+02 0.011 26.3 10.1 40 276-315 123-163 (492)
452 PHA03189 UL14 tegument protein 31.8 4.4E+02 0.0096 25.1 9.2 72 363-435 60-156 (348)
453 PHA03281 envelope glycoprotein 31.4 5.5E+02 0.012 26.8 10.4 105 196-300 298-495 (642)
454 PF01108 Tissue_fac: Tissue fa 30.9 79 0.0017 24.8 4.0 39 455-496 26-64 (107)
455 PRK14081 triple tyrosine motif 28.6 7.8E+02 0.017 26.7 34.1 92 45-139 222-315 (667)
456 PF14292 SusE: SusE outer memb 27.1 2.4E+02 0.0052 22.7 6.3 33 462-494 42-74 (122)
457 PF12988 DUF3872: Domain of un 26.6 3.7E+02 0.008 22.2 8.9 20 125-144 43-62 (137)
458 KOG1026|consensus 26.4 91 0.002 33.9 4.5 159 123-318 201-366 (774)
459 cd05890 Ig2_Nectin-1_like Seco 23.9 1.4E+02 0.0031 23.0 3.9 51 166-217 32-85 (98)
460 KOG1378|consensus 23.7 3E+02 0.0064 28.0 7.2 73 14-88 42-127 (452)
461 PF02480 Herpes_gE: Alphaherpe 21.4 1.3E+02 0.0029 30.6 4.5 40 277-316 86-126 (439)
462 PF00801 PKD: PKD domain; Int 21.3 3E+02 0.0064 19.2 6.7 28 366-393 7-34 (69)
463 PF13750 Big_3_3: Bacterial Ig 20.1 5.5E+02 0.012 21.9 11.5 21 236-256 117-137 (158)
No 1
>KOG3513|consensus
Probab=100.00 E-value=9.5e-38 Score=323.63 Aligned_cols=391 Identities=21% Similarity=0.275 Sum_probs=306.6
Q ss_pred EEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCC
Q psy7039 22 ATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 22 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~ 100 (516)
........|.|.+.+- |.|+-. +.|++.++ .+..-.....-...|.|.+.+.+|.|.|+|.|.|..|...
T Consensus 251 ~~a~~G~~v~LECfA~----G~P~P~--i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~--- 321 (1051)
T KOG3513|consen 251 ETALKGQSVKLECFAL----GNPTPQ--IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT--- 321 (1051)
T ss_pred ccccCCCeEEEEEEec----CCCCCc--EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccce---
Confidence 4445678888888762 233332 33555555 4433333334567899999999999999999999988332
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
....+.+. ++|.+. ..++++.+..|+.+.|.|.+. |.|.++++|.+|+.+
T Consensus 322 ~~~~v~v~---a~P~w~-~~~~d~~~~~gs~v~~eC~a~--------------------------g~P~p~v~WlkNg~p 371 (1051)
T KOG3513|consen 322 HSGHVTVY---APPYWL-QKPQDTEADTGSNVTLECKAS--------------------------GKPNPTVKWLKNGEP 371 (1051)
T ss_pred eeEEEEEe---cCchhh-cccceeEecCCCCeEEEEEec--------------------------CCCCCceEEeeCCee
Confidence 22223332 578887 788999999999999999999 999999999999999
Q ss_pred eccCCc---eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee----e------eccccCCceEEEE
Q psy7039 181 CQIGGR---ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF----T------DNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~----~------~~~l~~g~~~~~~ 247 (516)
+....+ +.+. ...|+|.+++..|+|.|.|.|+|..|...+++.+.+... . ......|..+.+.
T Consensus 372 l~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~ 447 (1051)
T KOG3513|consen 372 LEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTID 447 (1051)
T ss_pred cCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEe
Confidence 987655 5553 458999999999999999999999999988876655433 1 1233457888888
Q ss_pred EEEEccCCCCCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCc
Q psy7039 248 VSAVNAAGTEKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~ 325 (516)
|.. .+.|.|.+.|.+.... .........+++|.|.+++.+|.|.|+|.|.|..|.......|.|...+.....
T Consensus 448 C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~-- 522 (1051)
T KOG3513|consen 448 CKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLA-- 522 (1051)
T ss_pred ecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEec--
Confidence 887 8999999999763321 111222467899999999999999999999999999999999999988765422
Q ss_pred eeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee--cCCceEEEECCeecCC---CC
Q psy7039 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR--PKPTPIWTVNGDEVSP---DG 400 (516)
Q Consensus 326 ~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~--p~~~i~W~~~~~~l~~---~~ 400 (516)
+.+..+..|+.+.|.|.+.-. ....|.|.++|..+.. ..
T Consensus 523 ------------------------------------P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~ 566 (1051)
T KOG3513|consen 523 ------------------------------------PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGD 566 (1051)
T ss_pred ------------------------------------cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCC
Confidence 355678999999999998644 4458999999997743 34
Q ss_pred ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCC
Q psy7039 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS 480 (516)
Q Consensus 401 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~ 480 (516)
++......+...|+|.+++. .|+|.|.|.|+....+.+..+.+.|.++|.|| ..+++.+++..++.|+|++.. |+++
T Consensus 567 ~~~~~~~~~~g~L~i~nv~l-~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP-~~v~~~~i~~t~~~lsW~~g~-dn~S 643 (1051)
T KOG3513|consen 567 HFEINDGSDSGRLTIANVSL-EDSGKYTCVAQTALDSASARADLLVRGPPGPP-PDVHVDDISDTTARLSWSPGS-DNNS 643 (1051)
T ss_pred ceEEeCCcCccceEEEeecc-ccCceEEEEEEEeecchhcccceEEecCCCCC-CceeEeeeccceEEEEeecCC-CCCC
Confidence 45544433336899999999 99999999999988888888999999999999 789999999999999999765 7789
Q ss_pred CcceEEEEEEecCCCceee
Q psy7039 481 PITNYVVEKYESATGVSDL 499 (516)
Q Consensus 481 ~i~~Y~v~~~~~~~~~~~~ 499 (516)
+|..|.|+.|....+.|..
T Consensus 644 pI~~Y~iq~rt~~~~~W~~ 662 (1051)
T KOG3513|consen 644 PIEKYTIQFRTPFPGKWKA 662 (1051)
T ss_pred CceEEeEEecCCCCCcceE
Confidence 9999999999986555443
No 2
>KOG3513|consensus
Probab=100.00 E-value=6.6e-32 Score=280.37 Aligned_cols=397 Identities=22% Similarity=0.280 Sum_probs=289.5
Q ss_pred CcceeccCCCCCCCCCcceEEEee-eCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDW-DKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~-~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..|.++...-.+=++..+....+ ....+.|.+.+|.+... ..|.....+... .-............|-|.++.
T Consensus 125 S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~---l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~ 201 (1051)
T KOG3513|consen 125 SREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPP---LRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVE 201 (1051)
T ss_pred ccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCC---ccEEehhccCCcccccCcceeEecccceEEEeecc
Confidence 455566666555545555545444 45569999999864332 334333322221 111122344567889999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec----cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK----PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGV 154 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~----~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~ 154 (516)
..|.+.|.|.|.+..-...-......+... ....+|.|....+..+....|+.+.|.|.+.
T Consensus 202 ~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~--------------- 266 (1051)
T KOG3513|consen 202 TSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFAL--------------- 266 (1051)
T ss_pred hhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEec---------------
Confidence 999999999998844332222223333321 2346788876666688899999999999999
Q ss_pred cccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee--
Q psy7039 155 RANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-- 232 (516)
Q Consensus 155 ~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-- 232 (516)
|.|.|+|.|++.+.... ..+... ......|.|.+++.+|+|.|.|.++|..|.......+....
T Consensus 267 -----------G~P~P~i~W~k~~g~~~-~~r~~~--~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P 332 (1051)
T KOG3513|consen 267 -----------GNPTPQIKWRKVDGKPP-PRRATY--SNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPP 332 (1051)
T ss_pred -----------CCCCCcEEEEeCCCCCC-Ccceee--eccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCc
Confidence 99999999999776421 222222 45567999999999999999999999999877766554432
Q ss_pred -----eeeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 233 -----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 233 -----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
..+..+..|+.+.+.|.| .|.|.|++.|.+.. ..+ .-......+.|.|.+|...|+|.|+|.|+|.
T Consensus 333 ~w~~~~~d~~~~~gs~v~~eC~a---~g~P~p~v~WlkNg~pl~~~~r-~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk 408 (1051)
T KOG3513|consen 333 YWLQKPQDTEADTGSNVTLECKA---SGKPNPTVKWLKNGEPLEPAER-DPRYKIDDGTLIISNVQESDSGVYQCIAENK 408 (1051)
T ss_pred hhhcccceeEecCCCCeEEEEEe---cCCCCCceEEeeCCeecCccCC-CcceEEeCCEEEEEecccccCeEEEeeeecc
Confidence 245667889999999999 89999999997622 111 0112345789999999999999999999999
Q ss_pred CCCcceeEEEEEecC-CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 303 YGIDMADIEVVVVSK-PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~-p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
+|...+.+.|.|... |..+..| ....+.+..|..+.+.|...+
T Consensus 409 ~G~i~anA~L~V~a~~P~f~~~p------------------------------------~~~~~~a~~g~~v~i~C~~~a 452 (1051)
T KOG3513|consen 409 YGTIYANAELKVLASAPVFPLNP------------------------------------VERKVMAVVGGTVTIDCKPFA 452 (1051)
T ss_pred cceEeeeeEEEEEccCCCCCCCc------------------------------------cceEEEEEeCCeEEEeeccCC
Confidence 999999999999876 5444432 123457889999999999999
Q ss_pred ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCccccc
Q psy7039 382 RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSD 461 (516)
Q Consensus 382 ~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~ 461 (516)
.|.+.+.|.+++..+..++++.+..+ .+|.|.+++. +|+|.|+|.|.|..|.....+.|.|++++..-..+.....
T Consensus 453 sP~p~~~W~k~~~~~~~~~r~~i~ed---GtL~I~n~t~-~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v 528 (1051)
T KOG3513|consen 453 SPKPKVSWLKGGEKLLQSGRIRILED---GTLEISNVTR-SDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDV 528 (1051)
T ss_pred CCcceEEEEcCCcccccCceEEECCC---CcEEecccCc-ccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhh
Confidence 99999999999987777788877543 4699999999 9999999999999999999999999987653211222333
Q ss_pred ccCCeEEEEeeCC
Q psy7039 462 ITPESCSLSWKPP 474 (516)
Q Consensus 462 ~~~~~~~l~W~~p 474 (516)
-.++++.|.++..
T Consensus 529 ~~g~~v~l~Ce~s 541 (1051)
T KOG3513|consen 529 KVGESVTLTCEAS 541 (1051)
T ss_pred ccCceEEEEeecc
Confidence 3457788888754
No 3
>KOG4221|consensus
Probab=100.00 E-value=8e-31 Score=270.62 Aligned_cols=434 Identities=18% Similarity=0.221 Sum_probs=293.1
Q ss_pred ceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCC
Q psy7039 19 DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPG 96 (516)
Q Consensus 19 ~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~ 96 (516)
....+.....++.+++..- + .+.. .|.|..++. .|.. ....-.+..|.|.+++++|.|.|+|.+.+..-+.
T Consensus 147 ~~~~t~~~g~ta~f~c~vn---~-e~~p--~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r 219 (1381)
T KOG4221|consen 147 PESTTLLYGQTALFSCEVN---A-EPVP--TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQR 219 (1381)
T ss_pred ccceeEecCCcEEEEEEEc---C-ccCc--eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCC
Confidence 3333334556666666441 1 1111 244554433 3443 3333467889999999999999999998765444
Q ss_pred CCCCCCcceEeccCCC--CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEE
Q psy7039 97 EASKPTAPIVAKPKNL--APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGW 174 (516)
Q Consensus 97 ~~s~~~~~~~~~~~~~--~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W 174 (516)
......+.+. .+... ...| +..+....+.+|+++.|.|.+. +.|.+.+.|
T Consensus 220 ~S~~a~ltv~-s~~~~~~~~~f-l~~p~~~~v~~g~~v~leCvvs--------------------------~~p~p~v~W 271 (1381)
T KOG4221|consen 220 TSNEAELTVL-SDPGALNKLVF-LDEPSNAVVVEGDDVVLECVVS--------------------------GVPKPSVKW 271 (1381)
T ss_pred ccceeEEEec-CCcccccceee-ecCCCccccccCCcEEEEEEec--------------------------CCCCCceEE
Confidence 3222222222 11111 1112 3677788899999999999999 999999999
Q ss_pred eeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc--CCCceEEEEEeece-ee----eeccccCCceEEEE
Q psy7039 175 SINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN--NLGTATASAHVTGT-EF----TDNNVHEGKAYEYR 247 (516)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~--~~g~~~~~~~~~~~-~~----~~~~l~~g~~~~~~ 247 (516)
.+|+..+.-++ +++. ..+.+.|.|.+++..|+|.|+|.+.| ..+.+.+++.+... .| ......++..++|.
T Consensus 272 lrng~~i~~ds-~riv-l~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~e 349 (1381)
T KOG4221|consen 272 LRNGEKISVDS-YRIV-LVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFE 349 (1381)
T ss_pred eeCCeeeeecc-eEEE-EecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEe
Confidence 99999998765 3333 23456899999999999999999998 44444444443322 12 22334568889999
Q ss_pred EEEEccCCCCCceeccccccc---ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC----
Q psy7039 248 VSAVNAAGTEKPKISLDALIG---KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP---- 320 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~---~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~---- 320 (516)
|.+ .|.|.|++.|.+... ............ +.|..+-..|.|.|+|.++|..|.....+.+.+...|..
T Consensus 350 c~~---~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~ 425 (1381)
T KOG4221|consen 350 CPV---SGKPIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSD 425 (1381)
T ss_pred CCC---CCCCcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccC
Confidence 988 888999999965211 111222233333 999999999999999999999999888888865544321
Q ss_pred --CCCC--ceeeeccCCeeEEEecCCCCCCCCceeeccccccc-------------------------------------
Q psy7039 321 --PTGP--IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD------------------------------------- 359 (516)
Q Consensus 321 --p~~p--~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~------------------------------------- 359 (516)
+..| +.+..+....+.++|.+|. ..+..|.-|.-+..+
T Consensus 426 ~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n 504 (1381)
T KOG4221|consen 426 LLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKN 504 (1381)
T ss_pred ccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccC
Confidence 2222 5566678899999999888 555566655111000
Q ss_pred -----cccccEE----------EEcCCeEEEEEEEeeecCC----ceEEEECCeecCCCCceEEEEcCCeEEEEEcCcee
Q psy7039 360 -----LSIRDMT----------VLAGEEFTITVPFSGRPKP----TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420 (516)
Q Consensus 360 -----~~~~~~~----------v~~g~~~~l~C~~~g~p~~----~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~ 420 (516)
.....+. ...+....+.|.+...+++ .|.|++...... +....+....+...++|.++.+
T Consensus 505 ~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n~~e~ti~gL~k 583 (1381)
T KOG4221|consen 505 EAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED-DTGKELRVENNATEYTINGLEK 583 (1381)
T ss_pred cccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcC-CCCceEEEecCccEEEeecCCC
Confidence 0000000 1222234456666666666 688887665443 2233334445566899999999
Q ss_pred cCCceEEEEEEEcCCCceeEEEEEEEe---cCCCCCCCCcccccccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 421 ATDSGSYTIQLVNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~s~s~~l~v~---~~p~~P~~~l~~~~~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++.|.|+|.|.|..|.+..+..++|. +.|++|+.++++...+.+++.+.|.+| ....++.|++|.|+|+......
T Consensus 584 -~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~ 662 (1381)
T KOG4221|consen 584 -YTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSRED 662 (1381)
T ss_pred -ccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCccc
Confidence 99999999999999998888777776 457777688999999999999999986 4566888999999999776655
No 4
>KOG4221|consensus
Probab=99.98 E-value=1.6e-29 Score=261.02 Aligned_cols=404 Identities=23% Similarity=0.281 Sum_probs=289.5
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe---EEeecCCcEEEeCCCcC-----CCeEEEEEEEecCCCCCC
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA---VVVPAGETSCTVPGLIE-----GETYQFQVRAVNAAGPGE 97 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~i~~l~~-----~~~y~~~~~a~n~~g~~~ 97 (516)
...++.|.+.+-. .++ ..|+|+|++.+..-... ....-.+.+|-|..+.. .++|.|+|.|.-. ..
T Consensus 53 ~~~svlLecs~~~-~~~---~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~---~~ 125 (1381)
T KOG4221|consen 53 EGSSVLLECSAYA-AGG---TSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVE---DV 125 (1381)
T ss_pred cccceEEeccccc-cCC---CCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEcc---cc
Confidence 4457888887732 222 67899998766511111 11122456677776655 7899999998643 22
Q ss_pred CCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC
Q psy7039 98 ASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN 177 (516)
Q Consensus 98 ~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~ 177 (516)
.+..+....+... ..+.+. ..+.+..+..|+++.|.|.+. +.+.+.+.|.++
T Consensus 126 gsi~Sr~a~v~~a-~~~~f~-~~~~~~t~~~g~ta~f~c~vn--------------------------~e~~p~i~w~kn 177 (1381)
T KOG4221|consen 126 GSILSRTAKVALA-GLADFA-LQPESTTLLYGQTALFSCEVN--------------------------AEPVPTIMWLKN 177 (1381)
T ss_pred ceeecceEEEEec-ccCccc-cCccceeEecCCcEEEEEEEc--------------------------CccCceeEEecc
Confidence 2223332222222 233344 556678899999999999999 889999999999
Q ss_pred CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEee-------ceee----eeccccCCce
Q psy7039 178 GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVT-------GTEF----TDNNVHEGKA 243 (516)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~-------~~~~----~~~~l~~g~~ 243 (516)
+.++..++|+.+. .+..|.|.++++.|.|.|+|.+++....... .+.+. .+.| ....+..|+.
T Consensus 178 ~~pl~~~~r~i~l---psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~ 254 (1381)
T KOG4221|consen 178 DQPLPLDSRVIVL---PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDD 254 (1381)
T ss_pred cccccCCCcEEEc---CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCc
Confidence 9988887766654 4458999999999999999999986544322 22211 1122 2345678999
Q ss_pred EEEEEEEEccCCCCCceecccccccceE----EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
+.+.|.+ .|.|+|.+.|.+. +..+ ..........|.|.+++..|+|.|+|.|.|......+.+++.|..+|.
T Consensus 255 v~leCvv---s~~p~p~v~Wlrn-g~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 255 VVLECVV---SGVPKPSVKWLRN-GEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred EEEEEEe---cCCCCCceEEeeC-CeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCC
Confidence 9999999 9999999999762 1111 223345678899999999999999999999877788888999999888
Q ss_pred CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC
Q psy7039 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399 (516)
Q Consensus 320 ~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~ 399 (516)
.+..| .+....++.++.|.|.+.|.|.+.+.|+|+|..+..+
T Consensus 331 ~~~~p--------------------------------------~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ips 372 (1381)
T KOG4221|consen 331 FTKAP--------------------------------------TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPS 372 (1381)
T ss_pred CCCCC--------------------------------------cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcc
Confidence 76553 4455667888999999999999999999887544332
Q ss_pred CceEEEE-------------------------------------------------------------------------
Q psy7039 400 GRIKFET------------------------------------------------------------------------- 406 (516)
Q Consensus 400 ~~~~~~~------------------------------------------------------------------------- 406 (516)
+.+.+..
T Consensus 373 dy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~ 452 (1381)
T KOG4221|consen 373 DYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA 452 (1381)
T ss_pred cceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc
Confidence 2222111
Q ss_pred --------------------------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccc
Q psy7039 407 --------------------------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460 (516)
Q Consensus 407 --------------------------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~ 460 (516)
........+.++.+ ...|.++|.|.|..|++..+..|.|.++|.+|+. +.+.
T Consensus 453 ~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p-~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ 530 (1381)
T KOG4221|consen 453 QISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSP-LTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAY 530 (1381)
T ss_pred ccCCCcceEEEEEecCCchhhhheeccCCceEEEeeeccc-ceeEEEEEeccCcccCCccCCceEEecCCCCCcc-cccc
Confidence 00113466777888 8888889999999999999999999999988855 8888
Q ss_pred cccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc-eeeeEEeeeeeeeeEE
Q psy7039 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV-SDLFISKSEVKTGSLM 512 (516)
Q Consensus 461 ~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l~ 512 (516)
..+..++.+.|++|. .++++|++|.+.|.+.+.+. ...+....+.+..+|.
T Consensus 531 ats~~ti~v~WepP~-~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~ 582 (1381)
T KOG4221|consen 531 ATSPTTILVTWEPPP-FGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLE 582 (1381)
T ss_pred ccCcceEEEEecCCC-CCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCC
Confidence 889999999999986 57789999999999985555 4444444555555443
No 5
>KOG4222|consensus
Probab=99.94 E-value=1.2e-25 Score=231.40 Aligned_cols=402 Identities=20% Similarity=0.285 Sum_probs=287.5
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEe--EEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA--VVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
+.-..|.++.+ .....+.|...+|.... .=.|.|.+.+. .+... .........|.|.+++..|.|.|.|.
T Consensus 133 dfrv~prd~~~--a~ge~avlEcgpP~ghp-----eptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CV 205 (1281)
T KOG4222|consen 133 DFRVSPRDVQA--AVGEEAVLECGPPRGHP-----EPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACV 205 (1281)
T ss_pred hcccCcccccc--cccceeEEeccCCCCCC-----CCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeee
Confidence 33445555433 34455566666653111 12344555544 33111 12224677899999999999999999
Q ss_pred EecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC
Q psy7039 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP 168 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 168 (516)
|.|..|..+.....+.+. .+|.+. ..+....+..|..+.+.|.+. |.|
T Consensus 206 atNmvG~ReS~~A~lsv~-----e~P~f~-~rp~~~~v~~g~~~~f~c~v~--------------------------GdP 253 (1281)
T KOG4222|consen 206 ATNMVGERESIPARLSVQ-----EKPWFW-KRPKDLAVLVGAAAEFDCRVG--------------------------GDP 253 (1281)
T ss_pred ecccccccccccceeeec-----cCCccc-cccccceeecccccccccccC--------------------------CCC
Confidence 999999987665555554 367666 778888999999999999999 999
Q ss_pred ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e----eeccccCC
Q psy7039 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F----TDNNVHEG 241 (516)
Q Consensus 169 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~----~~~~l~~g 241 (516)
.+.+.|.+++..+.. .|+.+. ....+|.|..++..|.|.|.|.+.|..|..++.....+.. | .+..+.-|
T Consensus 254 ~P~Vrwkk~~~~~P~-~ry~i~--~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg 330 (1281)
T KOG4222|consen 254 QPTVRWKKDDPSLPR-SRYSIL--DDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALG 330 (1281)
T ss_pred CCceeeeccCCCCCc-cceeee--eccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccC
Confidence 999999997666653 344443 3446899999999999999999999999988776544432 2 34556668
Q ss_pred ceEEEEEEEEccCCCCCceecccccccceEEEE----------EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 242 KAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF----------VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~----------~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
....|.|.+ .|.|.|.+.|.......+-.. .....+.|+|.++...|.|.|.|...+..|.......
T Consensus 331 ~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~ 407 (1281)
T KOG4222|consen 331 GTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAY 407 (1281)
T ss_pred ceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccccccee
Confidence 889999998 899999999976333222221 1233448999999999999999999988888766555
Q ss_pred EEEecCC---CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceE
Q psy7039 312 VVVVSKP---GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388 (516)
Q Consensus 312 l~v~~~p---~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~ 388 (516)
+.+...- .+|.. . +....+.....+..+.+.|.+.+.|.+.+.
T Consensus 408 ~~qt~~~~~~rPpp~--i--------------------------------~~g~~nQtl~v~s~a~l~c~atg~P~p~i~ 453 (1281)
T KOG4222|consen 408 LEQTDVLTDSRPPPI--I--------------------------------EQGPANQTLPVGSTASLPCSATGAPTPNIS 453 (1281)
T ss_pred EEEEeeeccCCCCce--e--------------------------------eecccccccccCcccccChhhhCCCCCCch
Confidence 5443221 12111 0 012344566678899999999999999999
Q ss_pred EEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec---------------CCCCC
Q psy7039 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD---------------KPSPP 453 (516)
Q Consensus 389 W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~---------------~p~~P 453 (516)
|.+++-.+........ .....+|+|.++.. -|.|.|+|.|.+..|+...++.|+|.. .|++|
T Consensus 454 wl~dg~~v~~~d~~~s--~~~~~~l~i~dl~~-~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p 530 (1281)
T KOG4222|consen 454 WLKDGCNVMNPDSRIS--QQEIGSLRIRDLKG-PDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPP 530 (1281)
T ss_pred hhhcccccccCCcccc--eeeeceeeeeeeec-CCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCC
Confidence 9999876643321111 12335799999999 999999999999999998888888852 23334
Q ss_pred CCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 454 QGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 454 ~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..-.+.+++..+++|+|.+....+..++.+|+++|..-..+.
T Consensus 531 -~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~e 572 (1281)
T KOG4222|consen 531 -GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGE 572 (1281)
T ss_pred -CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcc
Confidence 334578889999999999877667899999999986554444
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.90 E-value=6.5e-22 Score=191.63 Aligned_cols=251 Identities=19% Similarity=0.178 Sum_probs=168.6
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+++.|.|...+. ...|.|.++++|++++.... +... ......|.|.++
T Consensus 36 ~~~~~ge~~~l~C~~~~~---------------------~~~g~p~~~i~W~K~g~~~~---~~~~--~~~g~~l~i~~~ 89 (326)
T PHA02785 36 FMELENEPVILPCPQINT---------------------LSSGYNILDILWEKRGADND---RIIP--IDNGSNMLILNP 89 (326)
T ss_pred hhhhcCCCEEEECCCccc---------------------cccCCCCceEEEEECCCccc---eEEE--ccCCceEEEccc
Confidence 345679999999997410 01177889999999875321 1111 122346889999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeeceee---------eeccccCCceEEEEEEEEcc--CCCCCceecccccccceEE
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF---------TDNNVHEGKAYEYRVSAVNA--AGTEKPKISLDALIGKRIK 272 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------~~~~l~~g~~~~~~~~~~~~--~g~p~p~i~W~~~~~~~~~ 272 (516)
..+|+|.|+|.++|..|....+..+.+... ....+.+|....+.|..+.. .+.++|.++|.+.......
T Consensus 90 ~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~ 169 (326)
T PHA02785 90 TQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNK 169 (326)
T ss_pred CcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCc
Confidence 999999999999999887665543332111 12345678888899974321 4568899999652211111
Q ss_pred EEEecceeeEEEccCCCCCceEEEEEEEecCCCcce----eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA----DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 273 ~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~----~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
.......+.|.|.+++.+|.|.|+|.|.|..|.... .+.+.|..+..+|..
T Consensus 170 r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~------------------------- 224 (326)
T PHA02785 170 RLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM------------------------- 224 (326)
T ss_pred ceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-------------------------
Confidence 111233568999999999999999999998876543 234444432222210
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCC-----ceEEEEcC--------CeEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDG-----RIKFETSE--------NQTI 412 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~-----~~~~~~~~--------~~~~ 412 (516)
..+....+..|+.+.|.|.+.|.|.+ .+.|.++|..+.... ++...... ....
T Consensus 225 -----------~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (326)
T PHA02785 225 -----------QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSR 293 (326)
T ss_pred -----------cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEE
Confidence 12245667889999999999998864 799999998875321 22222110 1357
Q ss_pred EEEcCceecCCceEEEEEEEcCCCc
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|+|.++.. .|.|.|.|.|.|..|.
T Consensus 294 L~I~~V~~-~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 294 LNINPVKE-EDATTFTCMAFTIPSI 317 (326)
T ss_pred EEECCcch-hcCeeeEEEEEeccCc
Confidence 99999999 9999999999998854
No 7
>KOG4194|consensus
Probab=99.89 E-value=5.9e-22 Score=192.10 Aligned_cols=268 Identities=22% Similarity=0.338 Sum_probs=204.7
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccC---Cc
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIG---GR 186 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~---~~ 186 (516)
.+|+|. ..|..+.+..|..++|+|.+. + ..+..+.|+++......- +.
T Consensus 502 pkpqI~-~qPe~~~al~g~nirftC~a~--------------------------sssasplsi~WR~dnevq~rv~ved~ 554 (873)
T KOG4194|consen 502 PKPQIV-TQPETVSALIGENIRFTCNAY--------------------------SSSASPLSIEWRKDNEVQPRVDVEDF 554 (873)
T ss_pred CCccee-cCchHhhhhhccceEEEEEec--------------------------cCCCCCceeEeeeccccCcccchhcc
Confidence 467777 788888899999999999988 4 566789999876533211 11
Q ss_pred eEEee----------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE-Eeec---eee----eeccccCCceEEEEE
Q psy7039 187 ADVQT----------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA-HVTG---TEF----TDNNVHEGKAYEYRV 248 (516)
Q Consensus 187 ~~~~~----------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~-~~~~---~~~----~~~~l~~g~~~~~~~ 248 (516)
..+.. ....+.|++.|++..|+|.|.|.++|.+|+..+.. ...+ ..| .+..+..|+...+.|
T Consensus 555 a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~C 634 (873)
T KOG4194|consen 555 ATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLEC 634 (873)
T ss_pred hhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeee
Confidence 11111 11246899999999999999999999999875443 1111 222 345677899999999
Q ss_pred EEEccCCCCCceecccccccc------eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCC
Q psy7039 249 SAVNAAGTEKPKISLDALIGK------RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322 (516)
Q Consensus 249 ~~~~~~g~p~p~i~W~~~~~~------~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~ 322 (516)
.| .|.|.|.|.|.+..+. ..+..+...+..+.|.|++.+|+|.|+|.|.|.+|..++.+.++|.+.|.+..
T Consensus 635 aA---tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~ 711 (873)
T KOG4194|consen 635 AA---TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI 711 (873)
T ss_pred ec---cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccc
Confidence 98 9999999999764433 22445567788999999999999999999999999999999999999886532
Q ss_pred CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEECCeecCCCCc
Q psy7039 323 GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVNGDEVSPDGR 401 (516)
Q Consensus 323 ~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~~~~l~~~~~ 401 (516)
+..+..+..|+.+.+.|.+.+.|. |++.|+++++++....+
T Consensus 712 --------------------------------------PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r 753 (873)
T KOG4194|consen 712 --------------------------------------PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER 753 (873)
T ss_pred --------------------------------------cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence 245678999999999999999887 89999999987754443
Q ss_pred eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 402 IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 402 ~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
-.+ ..+..-|++.+... .|+|.|+|...|..|.......+.+...+
T Consensus 754 h~f--~d~dQllvv~~~~~-~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 754 HTF--PDGDQLLVVKENLV-EDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccC--CCCCeEEEEEehhh-hhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 222 23444677888888 99999999999999987666666665443
No 8
>KOG4222|consensus
Probab=99.85 E-value=2.2e-20 Score=192.95 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=217.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCcc
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTK 160 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~ 160 (516)
|.|.|+|.|.|..|....-...+.+..... .+- ..+..+.+..|+.+.|.|.-. +
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrd----dfr-v~prd~~~a~ge~avlEcgpP---------~----------- 157 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRD----DFR-VSPRDVQAAVGEEAVLECGPP---------R----------- 157 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEech----hcc-cCcccccccccceeEEeccCC---------C-----------
Confidence 899999999999998776555555544211 122 445568888999999999755 1
Q ss_pred ceeecCcCceeeEEeeCCeeeccC--CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE---Eeece----
Q psy7039 161 GWVKLSEPFLNHGWSINGQVCQIG--GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA---HVTGT---- 231 (516)
Q Consensus 161 ~~~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~---~~~~~---- 231 (516)
+.|.+.+.|.++++++... .++.+. ....|.|.++...|+|.|.|.+.|..|..+... .+...
T Consensus 158 -----ghpeptvSw~Kdg~pl~~~~~~~~~li---sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~ 229 (1281)
T KOG4222|consen 158 -----GHPEPTVSWVKDGKPLDHYDVPIIALI---SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFW 229 (1281)
T ss_pred -----CCCCCcceeecCCCccccccceeEEEe---cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccc
Confidence 8899999999999988732 223333 234799999999999999999999999876543 22111
Q ss_pred -eeeeccccCCceEEEEEEEEccCCCCCceeccccc--ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 232 -EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL--IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 232 -~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
...+..+..|....+.|.+ .|.|.|++.|.+. .....+..+..+..+|.|.++.+.|.|.|.|.+.|..|...+
T Consensus 230 ~rp~~~~v~~g~~~~f~c~v---~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~a 306 (1281)
T KOG4222|consen 230 KRPKDLAVLVGAAAEFDCRV---GGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEA 306 (1281)
T ss_pred cccccceeeccccccccccc---CCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeecccccccccc
Confidence 1234556678889999988 9999999999762 222223333455678999999999999999999999999999
Q ss_pred eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceE
Q psy7039 309 DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388 (516)
Q Consensus 309 ~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~ 388 (516)
...++|..+|..-.. +.+..+..|..+.|.|.+.|+|.|.+.
T Consensus 307 sa~ltV~apP~f~kk--------------------------------------p~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 307 SATLTVQAPPSFGKK--------------------------------------PRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred ccceEEecCcccccc--------------------------------------cCccccccCceEEeeeecCCCCCcceE
Confidence 999999998876533 355678889999999999999999999
Q ss_pred EEECCeec--------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 389 WTVNGDEV--------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 389 W~~~~~~l--------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|.+.+... ..+.+..+. ... .|+|+++.. .|.|.|.|...+..|.......+.+
T Consensus 349 W~keg~q~llf~~~p~~~~~r~svs--~~g-~L~it~v~~-~d~g~Yvcq~~~~~~ss~~~a~~~q 410 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSNGRGSVS--PTG-TLTITNVRQ-SDEGYYVCQTQTSAGSSLTKAYLEQ 410 (1281)
T ss_pred EeccCcceecccCCCCCcCccceec--CCC-Ccccccccc-cccceEeecccccccccccceeEEE
Confidence 99987531 112333333 333 899999999 9999999999999988655544444
No 9
>KOG4194|consensus
Probab=99.81 E-value=1.3e-18 Score=169.15 Aligned_cols=216 Identities=21% Similarity=0.278 Sum_probs=169.7
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.+.++...++|+|+|.+.|..|.....+..+.+. ..|.+. ..|.++.+..|+.+.|.|.++
T Consensus 573 ~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~-----~~PsFt-ktP~dltl~tg~mArl~CaAt--------- 637 (873)
T KOG4194|consen 573 TAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----QAPSFT-KTPEDLTLRTGQMARLECAAT--------- 637 (873)
T ss_pred hheeeeeeeecccCceEEEEEecccCcchhheeEEEee-----ccCccc-cCcccceeecccceeeeeecc---------
Confidence 45688999999999999999999999876655555554 367777 888999999999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCee-eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQV-CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.|.|.++|.. ++....-++.-......+.|.|++.+|+|.|+|.+.|.+|...+++.
T Consensus 638 -----------------G~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAt 700 (873)
T KOG4194|consen 638 -----------------GHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANAT 700 (873)
T ss_pred -----------------CCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceE
Confidence 999999999997765 54332223333444568999999999999999999999999888776
Q ss_pred eecee---e----eeccccCCceEEEEEEEEccCCCCC-ceecccccccce-EEE--EEecceeeEEEccCCCCCceEEE
Q psy7039 228 VTGTE---F----TDNNVHEGKAYEYRVSAVNAAGTEK-PKISLDALIGKR-IKE--FVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 228 ~~~~~---~----~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~~~~~~-~~~--~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+ | ....+..|+...+.|.+ .|.|+ |.+.|++....- +.. .....+.-|++.+...+|.|.|+
T Consensus 701 L~V~e~p~f~~PL~~~~V~~get~vlqC~a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yT 777 (873)
T KOG4194|consen 701 LTVLETPSFSIPLEDQLVVVGETLVLQCLA---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYT 777 (873)
T ss_pred EEEecCCcccccccceEEEecceEEEEEec---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEE
Confidence 54433 2 34567789999999998 88887 999998743322 222 23455667888899999999999
Q ss_pred EEEEecCCCcceeEEEEEecCCC
Q psy7039 297 IEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 297 c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|...|..|.....+.+.+...+.
T Consensus 778 cem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 778 CEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred EEEEeeccceeeEEEEEEeecCC
Confidence 99999999887777777665544
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.61 E-value=6.6e-14 Score=135.85 Aligned_cols=203 Identities=13% Similarity=0.060 Sum_probs=129.5
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...+.|..++..|.|.|+|.|.|..|....+ ..+.+.... +|.+. ..+....+.+|..+.|.|....
T Consensus 81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s-~~L~V~~~~---~~~~~-~~~~~~~~~~g~~~~i~C~~~~-------- 147 (326)
T PHA02785 81 GSNMLILNPTQSDSGIYICITKNETYCDMMS-LNLTIVSVS---ESNID-LISYPQIVNERSTGEMVCPNIN-------- 147 (326)
T ss_pred CceEEEcccCcccCeEEEEEEECCCcceEEE-EEEEEEecC---CCccc-eeeccceecccCcEEEECCChh--------
Confidence 3458899999999999999999987643321 222222221 23232 1223345678999999997210
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE--
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA-- 226 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~-- 226 (516)
.|+ .+.+.+.++|+++.. + ...++... ..+.|.|.+++.+|+|.|+|.+.|..|......
T Consensus 148 ------------~~~-~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~ 209 (326)
T PHA02785 148 ------------AFI-ASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTR 209 (326)
T ss_pred ------------hcc-cCCCCceEEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEE
Confidence 001 157889999987542 2 23343332 235899999999999999999999877654321
Q ss_pred --Eeece---------eeeeccccCCceEEEEEEEEccCCCCC---ceecccccc----c------ceEEEEE-------
Q psy7039 227 --HVTGT---------EFTDNNVHEGKAYEYRVSAVNAAGTEK---PKISLDALI----G------KRIKEFV------- 275 (516)
Q Consensus 227 --~~~~~---------~~~~~~l~~g~~~~~~~~~~~~~g~p~---p~i~W~~~~----~------~~~~~~~------- 275 (516)
.+.+. ......+..|+.+.+.|.+ .|.|. +.+.|.+.. . .++....
T Consensus 210 ~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a---~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (326)
T PHA02785 210 IVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRV---SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDK 286 (326)
T ss_pred EEEEEEeccCCCceecCCCcEEecCCCcEEEEEEE---ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCcccccc
Confidence 11111 0112234569999999999 66565 478995521 0 1111110
Q ss_pred -ecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 276 -TSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 276 -~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
......|.|.+++.+|.|.|+|.|.|..|.
T Consensus 287 ~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 287 RRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred ceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 012468999999999999999999998744
No 11
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=1.5e-14 Score=114.01 Aligned_cols=92 Identities=30% Similarity=0.478 Sum_probs=85.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+..|+.+.|.|.+.|.|++.+.|++++..+..+.++.+......+.|.|.++.. .|+|.|+|.|.|..|....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~G~~~~ 84 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKLGSRQA 84 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCCCceeE
Confidence 356788999999999999999999999999999999877788887777788999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|+|.++|.||
T Consensus 85 ~~~l~V~~~P~pP 97 (98)
T cd05762 85 QVNLTVVDKPDPP 97 (98)
T ss_pred EEEEEEecCCCCC
Confidence 9999999999988
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.54 E-value=3.4e-13 Score=122.82 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=111.9
Q ss_pred eccccCCceEEEEEEEEccC-------C-CCCceecccccccceEE--------------EEEecceeeEEEccCCCCCc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAA-------G-TEKPKISLDALIGKRIK--------------EFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~-------g-~p~p~i~W~~~~~~~~~--------------~~~~~~~~~l~i~~l~~~d~ 292 (516)
...+.+|+.+.+.|.+.+.. . ...+.+.|.+....... .........|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 34567899999999872210 0 34558889764321100 00012356899999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|..+....++.|.|...+ ....+..|+.
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~--------------------------------------------~~~~~~~G~~ 146 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT--------------------------------------------INYQFNSGKD 146 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC--------------------------------------------ccceEecCCC
Confidence 99999999988887777777773211 1134678999
Q ss_pred EEEEEEEee-----ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 373 FTITVPFSG-----RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 373 ~~l~C~~~g-----~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+.|.|.+.+ .|.|.+.|++++..+..+.++.+. .+...|.|.++.. +|+|.|+|.|....+
T Consensus 147 v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~--~~~~~L~I~~V~~-~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 147 SKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR--NNNSTLVIKSATH-DDSGIYTCNLRFNKN 212 (227)
T ss_pred EEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe--CCCCEEEECcCCH-HhCEEEEEEEEEeEC
Confidence 999999853 457899999999998766666554 3344799999999 999999999998753
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.51 E-value=4.9e-13 Score=121.75 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=107.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeee--c-cCCc---e--E-Ee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVC--Q-IGGR---A--D-VQ 190 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~--~-~~~~---~--~-~~ 190 (516)
...+.+.+|+++.|.|.+.+ |+++- +.... ....++.|++.+... . .+.+ . . -+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~---~~~~~-------------~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~ 92 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKH---YKKSI-------------FFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNE 92 (227)
T ss_pred cceEEecCCCCEEEEccccc---ccccc-------------ccccccCCCccEEEEeCCeEEEEEcCCCccccccccccc
Confidence 34578899999999999861 11000 00001 345678888876431 0 1111 0 0 00
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEcc--CCCCCceecccccc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNA--AGTEKPKISLDALI 267 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~--~g~p~p~i~W~~~~ 267 (516)
.......|.|.+++.+|+|.|.|.+.|..+.....+.+.+... ....+..|....+.|.+... .|.|.|.++|.+..
T Consensus 93 ~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng 172 (227)
T PHA02826 93 IGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG 172 (227)
T ss_pred eecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECC
Confidence 1123468999999999999999999998887766665444221 22345679999999987322 14578999997621
Q ss_pred c---ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 268 G---KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 268 ~---~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
. ....+........|.|.+++.+|+|.|+|.|....+
T Consensus 173 ~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 173 NIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred EECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 1 111222334556899999999999999999997643
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.45 E-value=1.1e-12 Score=103.51 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=77.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+..+.+..|+.+.|.|.+. |.|.+.+.|++++..+....++.+......+.|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~--------------------------G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L 58 (98)
T cd05762 5 QFPEDMKVRAGESVELFCKVT--------------------------GTQPITCTWMKFRKQIQEGEGIKIENTENSSKL 58 (98)
T ss_pred ECCcCEEEECCCEEEEEEEEc--------------------------ccCCCceEEEECCEEecCCCcEEEEecCCeeEE
Confidence 556778999999999999999 999999999999999987778888777778899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeece
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~ 231 (516)
.|.++..+|+|.|+|.+.|..|...+.+.+.+.
T Consensus 59 ~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~ 91 (98)
T cd05762 59 TITEGQQEHCGCYTLEVENKLGSRQAQVNLTVV 91 (98)
T ss_pred EECCCChhhCEEEEEEEEcCCCceeEEEEEEEe
Confidence 999999999999999999999998877655443
No 15
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.42 E-value=3.1e-12 Score=98.25 Aligned_cols=83 Identities=35% Similarity=0.632 Sum_probs=73.1
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCcEEEE
Confidence 3567899999999999999999999999999988653 467776666678999999999 99999999999999998888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 87764
No 16
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.40 E-value=4.1e-12 Score=98.07 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEc--CC--eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETS--EN--QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~--~~--~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|+.+.|.|.+.|.|++.+.|.+++..+..+ .++.+... +. .+.|.|.++.. .|.|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCcceEEEEE
Confidence 788999999999999999999999887543 45655432 12 26799999999 99999999999999999999999
Q ss_pred EEecCCCCC
Q psy7039 445 YVVDKPSPP 453 (516)
Q Consensus 445 ~v~~~p~~P 453 (516)
.|..+|.+|
T Consensus 80 ~V~~~P~~P 88 (88)
T cd05735 80 TVQEPPDPP 88 (88)
T ss_pred EEeCCCCCC
Confidence 999998876
No 17
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=5.1e-12 Score=98.72 Aligned_cols=85 Identities=21% Similarity=0.365 Sum_probs=73.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +...+|.|.++.. .|+|.|+|.|.|..|...
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGGET 85 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCcce
Confidence 45667899999999999999999999999999998877777766544 3456899999999 999999999999999988
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8877754
No 18
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.38 E-value=7.5e-12 Score=97.81 Aligned_cols=88 Identities=23% Similarity=0.365 Sum_probs=77.3
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+...
T Consensus 3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~--------------------------g~P~p~v~W~k~g~~l~~~~~~~~~~~ 55 (92)
T cd05747 3 PATIL-TKPRSLTVSEGESARFSCDVD--------------------------GEPAPTVTWMREGQIIVSSQRHQITST 55 (92)
T ss_pred CCccc-ccCccEEEeCCCcEEEEEEEe--------------------------ecCCCEEEEEECCEECCCCCcEEEEEc
Confidence 56666 667889999999999999999 999999999999998877777777766
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
...+.|.|.+++.+|+|.|.|.+.|..|.......
T Consensus 56 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 90 (92)
T cd05747 56 EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT 90 (92)
T ss_pred CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence 66789999999999999999999999998776543
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.36 E-value=1.4e-11 Score=94.52 Aligned_cols=80 Identities=29% Similarity=0.407 Sum_probs=70.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~ 201 (516)
.+.+.+|+.+.|.|.+. |.|.|.+.|++++.++... .++.+......+.|.|.
T Consensus 4 ~~~v~~G~~v~l~c~~~--------------------------G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~ 57 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS--------------------------GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIE 57 (86)
T ss_pred EEEEEcCCEEEEEeeEe--------------------------ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEEC
Confidence 47789999999999999 9999999999999988753 46777666677899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.++|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 58 GAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred CCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 999999999999999999998776654
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.35 E-value=1.1e-11 Score=97.84 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=71.1
Q ss_pred cccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcC-----CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
...+.+..|+.+.|.|.+.| .|+|.+.|+|+|..+............ ..+.|.|..+.. +|+|.|+|.|.|..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~ 88 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSD 88 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCC
Confidence 35678999999999999999 899999999999988755443332221 247899999999 99999999999999
Q ss_pred CceeEEEEEEEe
Q psy7039 436 GSDSASCKVYVV 447 (516)
Q Consensus 436 G~~s~s~~l~v~ 447 (516)
|..+.++.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999998888874
No 21
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.34 E-value=9.4e-12 Score=97.00 Aligned_cols=88 Identities=26% Similarity=0.419 Sum_probs=78.8
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...+
T Consensus 1 P~~~-~~~~~~~v~~G~~~~l~c~~~--------------------------~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 53 (90)
T PF07679_consen 1 PVFT-KKPKDVTVKEGESVTLECEVS--------------------------GNPPPTVTWYKNGRPLTSSQRYQIESDG 53 (90)
T ss_dssp EEEE-EESSEEEEETTSEEEEEEEEE--------------------------ESSSSEEEEEETTEEEESSSSEEEEEET
T ss_pred CEEE-EecCCEEEeCCCEEEEEEEEE--------------------------eCCCCcccccccccceeeeeeeeeeccc
Confidence 3444 566789999999999999999 8899999999999999999999998888
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 54 GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 99999999999999999999999998887776544
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.34 E-value=8.2e-12 Score=92.79 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=61.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.|.|++++..+.. +.++.+.... +..+|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46899999999999999999998864 3566665433 335899999999 9999999999999999998888865
No 23
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.34 E-value=1.4e-11 Score=96.29 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=71.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec-CCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT-KSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~ 197 (516)
..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+... +...+
T Consensus 6 ~lp~~v~v~~G~~v~L~C~v~--------------------------G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~ 59 (92)
T cd05737 6 GLPDVVTIMEGKTLNLTCTVF--------------------------GDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS 59 (92)
T ss_pred cCCceEEEeCCCcEEEEEEEE--------------------------ecCCCeEEEEECCEECccCCCEEEEEcCCCEEE
Confidence 344567899999999999999 999999999999999987777776644 44578
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 60 L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 60 LTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 9999999999999999999999988766544
No 24
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.34 E-value=1.5e-11 Score=91.86 Aligned_cols=73 Identities=41% Similarity=0.697 Sum_probs=65.9
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+.++.+......+.|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCccEEEEEEEEC
Confidence 679999999999999999999998777777777777788999999999 9999999999999999888887764
No 25
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.33 E-value=2.3e-11 Score=94.99 Aligned_cols=83 Identities=24% Similarity=0.470 Sum_probs=74.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++.. .|.|.|.|.|.|..|....
T Consensus 9 ~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~ 87 (92)
T cd05747 9 KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENSEGKQEA 87 (92)
T ss_pred cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcCCCCEeE
Confidence 356788999999999999999999999999999988777777777666678999999999 9999999999999999887
Q ss_pred EEEE
Q psy7039 441 SCKV 444 (516)
Q Consensus 441 s~~l 444 (516)
++.|
T Consensus 88 ~~~l 91 (92)
T cd05747 88 QFTL 91 (92)
T ss_pred EEEe
Confidence 7765
No 26
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.33 E-value=2.7e-11 Score=94.23 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=70.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++.. .|.|.|.|.|.|..|....+
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCceeEE
Confidence 34566899999999999999999999999999887654443333444567899999999 99999999999999998888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 87764
No 27
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.31 E-value=1.2e-11 Score=92.17 Aligned_cols=74 Identities=28% Similarity=0.424 Sum_probs=63.2
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+. ....|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVAL-HDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCH-HhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5889999999999999999999999888665554432 224799999999 9999999999999999988888764
No 28
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.30 E-value=3.5e-11 Score=93.74 Aligned_cols=85 Identities=32% Similarity=0.513 Sum_probs=78.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|....
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~g~~~~ 84 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSSGEATA 84 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETTEEEEE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECCCEEEE
Confidence 357789999999999999999999999999999999888899998888999999999999 9999999999999999988
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 85 ~~~l~V 90 (90)
T PF07679_consen 85 SVNLTV 90 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888875
No 29
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.30 E-value=1.7e-11 Score=90.80 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+.. ..+|.|.++.. .|.|.|.|.|.|..|....++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITK-LDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCCh-hHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999998876666766542 23699999999 9999999999999999998888864
No 30
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.30 E-value=1.9e-11 Score=94.43 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.+..+.+|+.+.|.|.+. |.|.+.++|++++..+....++..
T Consensus 1 ~p~i~-~~~~~~~~~~G~~v~l~C~~~--------------------------G~P~P~v~W~k~~~~~~~~~~~~~--- 50 (88)
T cd05851 1 PADIN-VKFKDTYALKGQNVTLECFAL--------------------------GNPVPVIRWRKILEPMPATAEISM--- 50 (88)
T ss_pred CCceE-EccccEEEeCCCcEEEEEEec--------------------------ccCCCEEEEEECCcCCCCCCEEec---
Confidence 35555 566678899999999999999 999999999999887755433322
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....|.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 51 -~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 51 -SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred -CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 23589999999999999999999999988766544
No 31
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.30 E-value=3.3e-11 Score=95.29 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=70.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE------cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET------SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
....+..|+.+.|.|.+.|.|+|.+.|++++..+..+.+..... ....+.|.|.++.. +|+|.|+|.|.|..|
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g 89 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDA 89 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCc
Confidence 35678899999999999999999999999999987554433221 12236899999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
..+.++.|.|.
T Consensus 90 ~~~~t~~l~V~ 100 (101)
T cd05859 90 VKSYTFALQIQ 100 (101)
T ss_pred eEEEEEEEEEE
Confidence 99988888874
No 32
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.29 E-value=4.9e-11 Score=93.88 Aligned_cols=84 Identities=23% Similarity=0.370 Sum_probs=70.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..+..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ....+.|.|.++.. .|.|.|+|.|.|..|....
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 86 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDK-LDEAEYTCIAENKAGEQEA 86 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCCh-hhCEEEEEEEEcCCCeEEE
Confidence 44567899999999999999999999999999887654 33332 33445799999999 9999999999999999999
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 99888864
No 33
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.28 E-value=3.1e-11 Score=89.84 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=61.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+.... +...|.|.++.. +|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 46899999999999999999988864 3456654443 334799999999 9999999999999999998888765
No 34
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.28 E-value=2.7e-11 Score=93.53 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=68.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++. . ....|.|.++.. +|.|.|+|.|.|..|....
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~--~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--M--SGAVLKIFNIQP-EDEGTYECEAENIKGKDKH 81 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--c--CCCEEEECcCCh-hhCEEEEEEEEcCCCceEE
Confidence 4566788999999999999999999999999988765443322 2 234799999999 9999999999999999988
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 82 ~~~l~V~ 88 (88)
T cd05851 82 QARVYVQ 88 (88)
T ss_pred EEEEEEC
Confidence 8888763
No 35
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.26 E-value=8.7e-11 Score=91.56 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=72.5
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++...... ...+|.|.++.. .|.|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCcee
Confidence 456788999999999999999999999999999988766666554433 345799999999 999999999999999998
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
.++.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8877764
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.26 E-value=6.4e-11 Score=89.32 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=65.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+....+...|.|.++.. .|.|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEEEecccEEE
Confidence 678999999999999999999998887766777776666677899999999 9999999999999998766554443
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.24 E-value=6.2e-11 Score=90.98 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=69.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++... . ..|.|.++.. .|.|.|+|.|.|..|....
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--~--~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--A--GDLRITKLSL-SDSGMYQCVAENKHGTIYA 79 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--C--CEEEEeeCCH-HHCEEEEEEEECCCCeEEE
Confidence 456788999999999999999999999999999988766555543 2 3699999999 9999999999999999888
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
++.|.|
T Consensus 80 ~~~l~V 85 (85)
T cd05728 80 SAELAV 85 (85)
T ss_pred EEEEEC
Confidence 887764
No 38
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.24 E-value=1.5e-10 Score=89.98 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=69.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.++....+.+|+.+.|.|.+. |.|.|.+.|++++..+................|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~--------------------------G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L 58 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAE--------------------------GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNL 58 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEE--------------------------EcCCCeEEEEECCEEccCCccEEEEecCCEEEE
Confidence 445567799999999999999 999999999999988765444333334556799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.++..+|.|.|.|.+.|..|.......+
T Consensus 59 ~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 59 QLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 999999999999999999999987766543
No 39
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.23 E-value=9.1e-11 Score=87.56 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=61.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+... .+...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 36899999999999999999998864 345655443 3445799999999 9999999999999999888887764
No 40
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.23 E-value=8.4e-11 Score=92.83 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=67.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeec-----CC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTT-----KS 194 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~-----~~ 194 (516)
...+.+.+|+++.|.|.+. | .|.+.+.|++++.++....+..+... ..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~--------------------------g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~ 63 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVE--------------------------AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRY 63 (101)
T ss_pred CceEEEECCCCEEEEEEEE--------------------------ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceE
Confidence 3567889999999999999 9 89999999999999875544333322 13
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+.|.|..+.++|+|.|+|.|.|..|.......+
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L 97 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFEL 97 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEE
Confidence 5789999999999999999999999987765544
No 41
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.22 E-value=1.7e-10 Score=89.34 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=69.7
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
.+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCcEE
Confidence 356678999999999999999998 899998 46666666777777666677899999999 99999999999999985
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
..+..|.+
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 55555544
No 42
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=1.3e-10 Score=85.86 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=59.7
Q ss_pred eEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 372 ~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
++.|.|.+.|.|.|.+.|++++..+....++.+... ..|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVK-SDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCc-ccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 368999999999999999999988866666655432 2477889999 9999999999999999988888764
No 43
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.22 E-value=1.4e-10 Score=86.60 Aligned_cols=63 Identities=38% Similarity=0.600 Sum_probs=56.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+....++.+......+.|.|.++..+|+|.|+|.+.|..|.......+
T Consensus 10 G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 10 GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence 999999999999999877777777777778899999999999999999999999988776544
No 44
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.22 E-value=1.2e-10 Score=91.16 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=67.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecC-CceEEEE-CCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCC-C
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPK-PTPIWTV-NGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTV-G 436 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~-~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~-G 436 (516)
+....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... ...+.|.|.++.. .|+|.|+|.|.|.. |
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~g 85 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDEG 85 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCCC
Confidence 45567899999999999999995 6999998 6766544 345544332 3347899999999 99999999999997 8
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 86 ~~~~s~~l~v 95 (96)
T cd05865 86 ESEATVNVKI 95 (96)
T ss_pred cEEEEEEEEE
Confidence 8888888776
No 45
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.22 E-value=1.5e-10 Score=88.66 Aligned_cols=79 Identities=27% Similarity=0.344 Sum_probs=64.2
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCC---CceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPD---GRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~---~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+++.|.|.+.|.|.| .+.|++++..+... .++. +......+.|+|.++.. .|+|.|+|.|.|..|..+.++.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCCCEEEEEEE
Confidence 468899999999987 58999999877532 2332 22223456899999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998754
No 46
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.21 E-value=7.4e-11 Score=87.98 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=61.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
+|+.+.|.|.+. |.|.|.+.|++++..+....+..+. ...+|.|.+++.+|
T Consensus 1 eG~~v~l~C~~~--------------------------g~P~p~i~W~k~g~~~~~~~~~~~~---~~~~L~I~~v~~~D 51 (74)
T cd05745 1 EGQTVDFLCEAQ--------------------------GYPQPVIAWTKGGSQLSVDRRHLVL---SSGTLRISRVALHD 51 (74)
T ss_pred CCCeEEEEeECC--------------------------EecCCEEEEEECCEECCCCCCeEEc---cCCeEEEeeCCHHh
Confidence 589999999999 9999999999999988765554443 23589999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEe
Q psy7039 208 TGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+|.|+|.+.|..|.......+
T Consensus 52 ~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 52 QGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CEEEEEEEEeCCCceeEEEEE
Confidence 999999999999988776544
No 47
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.21 E-value=1.2e-10 Score=92.03 Aligned_cols=84 Identities=25% Similarity=0.468 Sum_probs=68.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--CeecC-----CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEVS-----PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l~-----~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++. +..+. .+.++.+........|.|.++.. .|+|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~ 86 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRYDCEAASR 86 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEEEEEEecc
Confidence 4678899999999999999999999999984 33332 12355555444557899999999 9999999999999
Q ss_pred CCceeEEEEEEE
Q psy7039 435 VGSDSASCKVYV 446 (516)
Q Consensus 435 ~G~~s~s~~l~v 446 (516)
.|....++.|.|
T Consensus 87 ~G~~~~~~~l~~ 98 (98)
T cd05870 87 IGGHQKSMYLDI 98 (98)
T ss_pred CCcceeEEEEeC
Confidence 999888877754
No 48
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.21 E-value=1.9e-10 Score=89.68 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=70.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec-CCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT-KSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~l 198 (516)
.+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+... +...+|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~--------------------------g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L 60 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF--------------------------GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASL 60 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE--------------------------EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEE
Confidence 34568899999999999999 899999999999998877666655433 334589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.|.+++.+|+|.|+|.+.|..|.....+.+.
T Consensus 61 ~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 61 TIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred EECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 9999999999999999999999988776543
No 49
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.21 E-value=1.2e-10 Score=87.17 Aligned_cols=74 Identities=23% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCc-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.|.|++++..+..... ...... ...|.|.++.. .|.|.|.|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQE-RSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCH-hhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67889999999999999999999988753321 111222 23688999999 9999999999999999999988877
No 50
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.20 E-value=1.1e-10 Score=87.64 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....... ........|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQP-NDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCCh-hhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999999999999998875443221 1222345799999999 9999999999999999988888876
No 51
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.20 E-value=1.2e-10 Score=86.29 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=61.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.+.+.|++++..+....++.+.. ..+|.|.+++.+|+
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~ 51 (73)
T cd05852 1 GGRVIIECKPK--------------------------AAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDE 51 (73)
T ss_pred CCeEEEEEecc--------------------------eeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHC
Confidence 67899999999 99999999999998887777776643 34799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEe
Q psy7039 209 GHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|+|.+.|..|....+..+
T Consensus 52 G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 52 GSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred EEEEEEEECCCCceeEEEEE
Confidence 99999999999988776544
No 52
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.20 E-value=1.8e-10 Score=86.35 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=60.5
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+...... .... ....|.|.++.. .|+|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQP-SDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCCh-hhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999887543211 1112 224699999999 9999999999999999888888876
No 53
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.20 E-value=1.6e-10 Score=88.85 Aligned_cols=81 Identities=27% Similarity=0.409 Sum_probs=66.4
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.+.. .........|.|.++.. .|+|.|+|.|.|..|....++.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCEEEEEEE
Confidence 457889999999999999999999999999886544321 12223445799999999 9999999999999999888887
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 764
No 54
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.20 E-value=1.9e-10 Score=90.72 Aligned_cols=84 Identities=26% Similarity=0.387 Sum_probs=68.9
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G 86 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCEASNRIG 86 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEEEEeCCC
Confidence 45678899999999999999999999999988655432 234444344557899999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 87 ~~~~s~~l~v 96 (96)
T cd05732 87 GDQQSMYLEV 96 (96)
T ss_pred CcEEEEEEeC
Confidence 9988887764
No 55
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.20 E-value=1.4e-10 Score=86.09 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=52.2
Q ss_pred CcCceeeEEeeCCeeecc-CCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI-GGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 999999999999998874 356666543 334589999999999999999999999988776544
No 56
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.20 E-value=1.9e-10 Score=90.97 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=69.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeecc-----CC
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQI-----GG 185 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~-----~~ 185 (516)
+|.|. .+.++.+.+|+.+.|.|.+. |.|.+.+.|+++ +..+.. ..
T Consensus 2 ~p~i~--~~~~~~~~~G~~v~l~C~~~--------------------------G~P~p~i~W~k~~~g~~~~~~~~~~~~ 53 (98)
T cd05870 2 QPHII--QLKNETTVENGAATLSCKAE--------------------------GEPIPEITWKRASDGHTFSEGDKSPDG 53 (98)
T ss_pred CCEEE--eeccEEEcCCCcEEEEEecc--------------------------cCCCCeEEEEECCCCceeccCCcCcCc
Confidence 35553 35678899999999999999 999999999994 444432 24
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|+.+........|.|.+++.+|+|.|+|.+.|..|....++.+
T Consensus 54 r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 96 (98)
T cd05870 54 RIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 96 (98)
T ss_pred eEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEE
Confidence 5666544556789999999999999999999999987766543
No 57
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.19 E-value=2.3e-10 Score=90.25 Aligned_cols=89 Identities=17% Similarity=0.329 Sum_probs=68.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. ..+....+..|+.+.|.|.+. |.|.|.++|++++..+... .++
T Consensus 2 ~p~i~-~~~~~~~~~~g~~v~l~C~~~--------------------------G~P~P~v~W~~~~~~~~~~~~~~~~~~ 54 (97)
T cd05869 2 KPKIT-YVENQTAMELEEQITLTCEAS--------------------------GDPIPSITWRTSTRNISSEEKTLDGHI 54 (97)
T ss_pred CceEE-EccCceEEEcCCCEEEEEEee--------------------------EeCCCEEEEEECCccccCCccccCccE
Confidence 35554 233445556689999999999 9999999999988766432 234
Q ss_pred EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+......+.|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 95 (97)
T cd05869 55 VVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95 (97)
T ss_pred EEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence 44444455799999999999999999999999988776544
No 58
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.19 E-value=1.4e-10 Score=86.25 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=63.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.. .|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTK-SDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCCh-hHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999887666666432 23699999999 9999999999999999988888764
No 59
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.19 E-value=2.5e-10 Score=90.08 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=69.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. .+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+... .++
T Consensus 2 ~P~i~--~~~~~~~~~g~~v~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~ 53 (96)
T cd05732 2 QPKIT--YLENQTAVELEQITLTCEAE--------------------------GDPIPEITWRRATRNFSEGDKSLDGRI 53 (96)
T ss_pred Cccce--ecCceeEecCCcEEEEEEEe--------------------------EcCCCcEEEEECCcccCCCCccccceE
Confidence 45553 34567889999999999999 9999999999988655432 344
Q ss_pred EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+........|.|.+++.+|+|.|.|.+.|..|....++.+
T Consensus 54 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l 94 (96)
T cd05732 54 VVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL 94 (96)
T ss_pred EEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence 44444556799999999999999999999999988766543
No 60
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.19 E-value=1.2e-10 Score=84.01 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=54.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|+++|..+... .....|.|.++.. +|+|.|+|.|.|..|..+.+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTE-ASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCH-HHCEEEEEEEEECCccEEEEEEEEE
Confidence 368999999999999999999887521 2345799999999 9999999999999998776666655
No 61
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.18 E-value=2.6e-10 Score=89.73 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=66.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLD 199 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~ 199 (516)
...+.+..|+.+.|.|.+. |.|.+.+.|++++..+... .++.. ....+.|.
T Consensus 10 ~~~~~~~~G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~ 61 (95)
T cd05730 10 EVNATANLGQSVTLACDAD--------------------------GFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMT 61 (95)
T ss_pred ccceEEeCCCCEEEEEecc--------------------------EeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEE
Confidence 3456789999999999999 9999999999999888654 33333 33446799
Q ss_pred eccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 62 I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 62 ILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 999999999999999999999877665543
No 62
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.18 E-value=3.5e-10 Score=89.29 Aligned_cols=81 Identities=28% Similarity=0.415 Sum_probs=65.3
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|..+
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~ 90 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCTASNTIGQDS 90 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEEEecCCCCee
Confidence 34456899999999999999999999988765432 234443334456899999999 999999999999999999
Q ss_pred EEEEEEE
Q psy7039 440 ASCKVYV 446 (516)
Q Consensus 440 ~s~~l~v 446 (516)
.++.|.|
T Consensus 91 ~~~~l~v 97 (97)
T cd05869 91 QSMYLEV 97 (97)
T ss_pred EEEEEEC
Confidence 8888765
No 63
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.17 E-value=1.9e-10 Score=86.66 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+....++.+...+....|.|.+++.+|+
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 54 (78)
T cd05743 1 GETVEFTCVAT--------------------------GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQ 54 (78)
T ss_pred CCEEEEEEEEE--------------------------EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHC
Confidence 68899999999 9999999999999888777777777667778999999999999
Q ss_pred eeEEEEEEcCCCceEEEE
Q psy7039 209 GHYSLTLENNLGTATASA 226 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~ 226 (516)
|.|.|.+.|..|......
T Consensus 55 G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 55 GAYTCEAINTRGMVFGIP 72 (78)
T ss_pred EEEEEEEEecCCEEEecc
Confidence 999999999998776543
No 64
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.17 E-value=2.8e-10 Score=88.13 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=67.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++.. +|+|.|.|.|.|..|....+
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQF-EDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCc-ccCEEEEEEEEECCCcEEEE
Confidence 456778999999999999999999999999887654433322 2335799999999 99999999999999999888
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 88876
No 65
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.17 E-value=2.2e-10 Score=88.85 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=66.3
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-e
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-D 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~ 438 (516)
....++.+.+|+.+.|.|.+.|. .|.+.|++++..+.. .++.+. .....|.|.++.. .|.|.|.|.|.|..|. .
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~--~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~ 82 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLS--NDNRTLTFNNVTR-SDTGHYQCEASNEVSNMT 82 (91)
T ss_pred cccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEe--CCCCEEEECcCCh-hhCEEEEEEEEcCCCCEE
Confidence 34556789999999999999999 999999999987754 334333 3344799999999 9999999999999998 4
Q ss_pred eEEEEEEE
Q psy7039 439 SASCKVYV 446 (516)
Q Consensus 439 s~s~~l~v 446 (516)
+..+.|.|
T Consensus 83 S~~~~L~V 90 (91)
T cd05740 83 SDPYILNV 90 (91)
T ss_pred eeeEEEEe
Confidence 55666665
No 66
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.17 E-value=3e-10 Score=85.87 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=57.9
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.+.|.|.|.+.|+++|..+..+........ ...+.|.|.++.. .|+|.|+|.|.|..|....+..+..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCCeeeEEEeee
Confidence 689999999999999999998876554332211 2345799999999 9999999999999999888776653
No 67
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.16 E-value=2.8e-10 Score=84.89 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=57.2
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEE-----EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE-----TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~-----~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
|.|.+.|+|.|.|.|+++|..+..+.++... .......|.|.++.. .|+|.|+|.|.|..|....++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcccceEEEee
Confidence 6799999999999999999999766543221 112346899999999 999999999999999987776654
No 68
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.16 E-value=3.9e-10 Score=88.24 Aligned_cols=82 Identities=23% Similarity=0.254 Sum_probs=64.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEee-CCeeecc-CCceEEee-cCCee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSI-NGQVCQI-GGRADVQT-TKSET 196 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~-~~~~~~~-~~~~~~~~-~~~~~ 196 (516)
+....+..|+.+.|.|.+. |.|. +.+.|++ ++..+.. ..++.+.. .+..+
T Consensus 7 p~~~~v~~G~~v~l~C~v~--------------------------G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~ 60 (96)
T cd05865 7 PSQGEISVGESKFFLCQVA--------------------------GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSS 60 (96)
T ss_pred CCccEECCCCeEEEEEEEe--------------------------CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCce
Confidence 3445688999999999999 9985 7999998 6766655 44555443 34467
Q ss_pred EEEeccCCCCCCeeEEEEEEcCC-CceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNL-GTATASAHV 228 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~ 228 (516)
+|.|.+++.+|+|.|+|.|.|.. |...+++.+
T Consensus 61 ~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l 93 (96)
T cd05865 61 TLTIYNANIDDAGIYKCVVSNEDEGESEATVNV 93 (96)
T ss_pred EEEEeccChhhCEEEEEEEEcCCCCcEEEEEEE
Confidence 99999999999999999999986 777766543
No 69
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.15 E-value=3.5e-10 Score=87.62 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=65.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEeecCCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~l 198 (516)
.+.++.+.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+...+....|
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~--------------------------G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L 58 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAI--------------------------GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRL 58 (92)
T ss_pred EecceEEcCCCeEEEEEEEE--------------------------EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEE
Confidence 34567889999999999999 9888 899998 4667766677777666777899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.|.++..+|+|.|+|.+.|..|...
T Consensus 59 ~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 59 TIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecCChHHCEEEEEEEEcCCCcEE
Confidence 9999999999999999999998764
No 70
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.14 E-value=2.7e-10 Score=86.31 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=63.4
Q ss_pred CeEEEEEEEee--ecCCceEEEECCeecCC---CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSG--RPKPTPIWTVNGDEVSP---DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g--~p~~~i~W~~~~~~l~~---~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+.|.|.+.+ .+++.|.|+++|..+.. +.+|..... .....|.|.++.. .|+|.|+|.|.|..+..+.++.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccCceEEEEEE
Confidence 35789999966 55779999999999852 234443211 2345799999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
+|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999765
No 71
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.14 E-value=3.7e-10 Score=84.03 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=51.6
Q ss_pred CcCceeeEEeeCCeeeccC-CceEEeecC-CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIG-GRADVQTTK-SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... .++.+...+ +...|.|.++..+|+|.|+|.+.|..|....+..+
T Consensus 9 G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 9 GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence 9999999999999888653 456665433 34579999999999999999999999998776543
No 72
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.14 E-value=2.1e-10 Score=84.17 Aligned_cols=68 Identities=25% Similarity=0.443 Sum_probs=58.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.. .|.|.|.|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGV-ADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCCh-hhCEEEEEEEECCCCcEEEEEEe
Confidence 4689999999999999999998887666665432 24799999999 99999999999999998887766
No 73
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.14 E-value=5.5e-10 Score=89.91 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=66.9
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC----CeEEEEEcCce-ecCCceEEEEEEEcCCCceeEEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE----NQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~----~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
.|..+.|.|.+.|.|.+.+.|++++..+.. +.++...... ..+.|+|.++. . .|.|.|.|.|.|..|....++
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~-~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA-LDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc-CCCEEEEEEEEeCCccCcEEE
Confidence 568899999999999999999999988753 3355433211 23679999987 6 899999999999999999999
Q ss_pred EEEEecCCC
Q psy7039 443 KVYVVDKPS 451 (516)
Q Consensus 443 ~l~v~~~p~ 451 (516)
.|.+..+|+
T Consensus 101 ~L~~~~~p~ 109 (109)
T cd05773 101 QLVSTSRPD 109 (109)
T ss_pred EEEecCCCC
Confidence 999987663
No 74
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.13 E-value=4.1e-10 Score=86.47 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=63.0
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCCC---ceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPDG---RIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~---~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+.|.|.+.|.|.+ .+.|++++..+.... .+. .........|.|.++.. .|+|.|+|.|.|..|..+.++.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCcEEEEEEE
Confidence 467899999999987 569999998875322 222 11223446899999999 99999999999999999999999
Q ss_pred EEecCC
Q psy7039 445 YVVDKP 450 (516)
Q Consensus 445 ~v~~~p 450 (516)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998764
No 75
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.13 E-value=4.9e-10 Score=85.97 Aligned_cols=80 Identities=31% Similarity=0.397 Sum_probs=67.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+.+..+..|+.+.|.|.+. |.|.+.+.|++++..+....++.+. ...|
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L 53 (85)
T cd05728 4 KVISDTEADIGSSLRWECKAS--------------------------GNPRPAYRWLKNGQPLASENRIEVE----AGDL 53 (85)
T ss_pred ccCCccEEcCCCcEEEEEEee--------------------------EeCCCEEEEEECCEECCCCCeEEEe----CCEE
Confidence 455668899999999999999 9999999999999988766665542 3479
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.++..+|+|.|+|.+.|..|....+..+
T Consensus 54 ~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 54 RITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred EEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 999999999999999999999987766544
No 76
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.12 E-value=4.4e-10 Score=87.01 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+....+.+|+.+.|.|.+. |.|.+.++|++++..+....... .....|
T Consensus 6 ~~p~~~~~~~g~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L 55 (88)
T cd04968 6 VFPKDTYALKGQNVTLECFAL--------------------------GNPVPQIKWRKVDGSMPSSAEIS----MSGAVL 55 (88)
T ss_pred ECCCceEEeCCCcEEEEEEee--------------------------EeCCCEEEEEECCCcCCCccEEE----EeCCEE
Confidence 455678889999999999999 99999999999887665443322 234689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 56 ~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 56 KIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred EECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 999999999999999999999987766543
No 77
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=3e-10 Score=83.08 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=55.3
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.|.|.+.|.|.|.+.|++++..+....++. ....|.|.++.. .|+|.|+|.|.|..|.......+++
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~L~I~~v~~-~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-----RGVHLTIYEVTE-KDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEc-----cCCEEEECcCCH-HHCEEEEEEEEECCCceeeEEEEEE
Confidence 589999999999999999999886543321 224799999999 9999999999999998766665554
No 78
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.11 E-value=5.3e-10 Score=83.86 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=61.2
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|.+.|.|.|.+.|++++..+..+....+........|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 58999999999999999999887654433333344455799999999 99999999999999999999998885
No 79
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.11 E-value=9.2e-10 Score=84.60 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=64.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEecc
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPF 202 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~ 202 (516)
..+.+|+.+.|.|.+. |.|.+.+.|++++..+....+. .+........|.|.+
T Consensus 4 ~~v~~G~~~~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~ 57 (85)
T cd05857 4 HAVPAANTVKFRCPAA--------------------------GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMES 57 (85)
T ss_pred EEcCCCCEEEEEEEcC--------------------------CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEcc
Confidence 4577899999999999 9999999999999988765443 122223456899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 58 VVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred CCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 99999999999999999988776543
No 80
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.11 E-value=4.4e-10 Score=82.95 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=57.3
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+. ... ......|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLE-SDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCH-HhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 3689999999999999999987664332 222 22345899999999 9999999999999999888888876
No 81
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.10 E-value=5.7e-10 Score=83.79 Aligned_cols=72 Identities=24% Similarity=0.378 Sum_probs=56.4
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE--EEEEEEe
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA--SCKVYVV 447 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~--s~~l~v~ 447 (516)
+.|.|.+.|.|.|.+.|+++|..+.... .+.+. .....|.|.++.. .|.|.|.|.|.|..|.... .+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4689999999999999999999875443 33333 2334799999999 9999999999999998644 4555443
No 82
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.10 E-value=4.7e-10 Score=82.68 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=57.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+..+.++. .....|.|.++.. .|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTE-EDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCH-HHCEEEEEEEEcCCccEEEEEEEEE
Confidence 3589999999999999999999886654332 2335799999999 9999999999999998777666655
No 83
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.09 E-value=7.2e-10 Score=83.69 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=64.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
+...+..|+.+.|.|.+.+. .+.+.|+++|..+..+.++.+. + ..|.|.++.. .|+|.|+|.|.|..|.....+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~--~~L~I~~~~~-~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--G--EEVQIKDAVP-RDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--C--CEEEECCCCh-hhCEEEEEEEeCCCCcccEEE
Confidence 34678899999999999986 5689999999988766666543 2 3699999999 999999999999999877766
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 6654
No 84
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.09 E-value=7.9e-10 Score=82.16 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=60.9
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.+.++|++++..+....++.+.. ...|.|.+++.+|+
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~ 51 (73)
T cd04969 1 GGDVIIECKPK--------------------------AAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDE 51 (73)
T ss_pred CCeEEEEEeee--------------------------EcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHC
Confidence 67899999999 99999999999999887776766543 24799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEe
Q psy7039 209 GHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|+|.+.|..|.......+
T Consensus 52 G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 52 GKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred EEEEEEEECCCCceEEEEEE
Confidence 99999999999988776544
No 85
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.09 E-value=1e-09 Score=81.87 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=51.6
Q ss_pred CcCceeeEEeeCCeeecc-CCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI-GGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+.. ..++.+... ....+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 999999999999998874 355655433 344589999999999999999999999988766543
No 86
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.08 E-value=9.2e-10 Score=80.50 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=54.9
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|+.+.|.|.+.|.|.|.|.|++++..+....++.. ....|.|.++ .|.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~---~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI---YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEecc---ccCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988755443322 2246888886 56899999999999998777665
No 87
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.08 E-value=8.5e-10 Score=82.69 Aligned_cols=73 Identities=29% Similarity=0.307 Sum_probs=58.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEeccCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d 207 (516)
|+.+.|.|.+. |.|.|.++|++++..+...... .... ....|.|.+++.+|
T Consensus 1 G~~v~l~C~~~--------------------------G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D 52 (76)
T cd05867 1 GETARLDCQVE--------------------------GIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSD 52 (76)
T ss_pred CCeEEEEEEee--------------------------EeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhh
Confidence 68899999999 9999999999999887653211 1211 24579999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEee
Q psy7039 208 TGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+|.|.|.+.|..|.......+.
T Consensus 53 ~G~Y~C~a~N~~G~~~~~~~l~ 74 (76)
T cd05867 53 TAVYQCEARNRHGNLLANAHVH 74 (76)
T ss_pred CEEEEEEEECCCCeEEEEEEEE
Confidence 9999999999999887665543
No 88
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.08 E-value=5.5e-10 Score=83.52 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=56.4
Q ss_pred EEEEEEEeeecCCceEEEECCeec-C--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEV-S--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l-~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++... . ...++... .....|.|.++.. .|+|.|.|.|.|..|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKI-EDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCc-ccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368999999999999999998632 1 12233332 2334799999999 9999999999999999888888877
No 89
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.08 E-value=7.5e-10 Score=83.08 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=60.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+...... .........|.|.+++.+|+
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~ 53 (76)
T cd04978 1 GETGRLDCEAE--------------------------GIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDT 53 (76)
T ss_pred CCeEEEEEEce--------------------------eeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhC
Confidence 68899999999 9999999999999888654432 12233456899999999999
Q ss_pred eeEEEEEEcCCCceEEEEEee
Q psy7039 209 GHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.|+|.+.|..|...+...+.
T Consensus 54 G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 54 AVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred EEEEEEEEccCCeEEEeEEEE
Confidence 999999999999887765543
No 90
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.08 E-value=7.8e-10 Score=82.75 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.++|++++.++........... ....|.|.+++..|+
T Consensus 1 g~~~~l~C~a~--------------------------G~P~P~i~W~k~g~~i~~~~~~~~~~~-~~~~l~i~~v~~~D~ 53 (76)
T cd05868 1 GEDGTLICRAN--------------------------GNPKPSISWLTNGVPIEIAPTDPSRKV-DGDTIIFSKVQERSS 53 (76)
T ss_pred CCCEEEEEEee--------------------------EeCCCeEEEEECCEEccccCCCceEEe-cCCEEEECCCCHhhC
Confidence 67899999999 999999999999998854322111111 224799999999999
Q ss_pred eeEEEEEEcCCCceEEEEEee
Q psy7039 209 GHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
|.|+|.+.|..|...++..+.
T Consensus 54 G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 54 AVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred EEEEEEEEcCCCEEEEEEEEE
Confidence 999999999999988776543
No 91
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.07 E-value=1.3e-09 Score=80.42 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=50.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 10 G~P~p~v~W~k~g~~~~~~~~~~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 10 GKPTPTVKWVKNGDMVIPSDYFKIVKE---HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred EeCCCEEEEEECCeECCCCCCEEEEec---CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 999999999999988876666665433 358888999999999999999999998776544
No 92
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.07 E-value=1e-09 Score=85.12 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=62.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+++..+.+|+++.|.|.+. |. .+.+.|++++..+.. .++.+ ......|
T Consensus 8 ~~~~~~~v~~g~~v~l~C~a~--------------------------g~-~p~i~W~kng~~l~~-~~~~~--~~~~~~L 57 (91)
T cd05740 8 NSVGNQPPEDNQPVTLTCEAE--------------------------GQ-ATYIWWVNNGSLLVP-PRLQL--SNDNRTL 57 (91)
T ss_pred cccCccccccCCcEEEEEEeC--------------------------CC-CCEEEEEECCEECCC-CCEEE--eCCCCEE
Confidence 445567899999999999999 88 999999999987754 34333 3344589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
.|.+++.+|+|.|.|.+.|..|....
T Consensus 58 ~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 58 TFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred EECcCChhhCEEEEEEEEcCCCCEEe
Confidence 99999999999999999999987644
No 93
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.07 E-value=1.1e-09 Score=82.64 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=61.5
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
....+.+|+.+.|.|.+. +. .+.+.|++++..+....++.+. ...|.|.
T Consensus 2 ~~~~~~~G~~v~l~C~~~--------------------------~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~ 50 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLR--------------------------DD-VQSINWTKDGVQLGENNRTRIT----GEEVQIK 50 (79)
T ss_pred CcEEecCCCCEEEEEEec--------------------------CC-CceEEEeeCCcCCCCCceEEEe----CCEEEEC
Confidence 446788999999999999 75 5689999999998876666653 2479999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+++.+|+|.|+|.+.|..|......
T Consensus 51 ~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 51 DAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCChhhCEEEEEEEeCCCCcccEEE
Confidence 9999999999999999888765544
No 94
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.07 E-value=1.4e-09 Score=83.00 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=64.0
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+....|+.+.|.|.+.|.|.|.+.|++++..+....... .......|.|.++.. +|+|.|.|.|.|..|....++.|
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCCh-hhCEEEEEEEEcCCccEEEEEEE
Confidence 456789999999999999999999999998765433222 223446899999999 99999999999999988777766
Q ss_pred EE
Q psy7039 445 YV 446 (516)
Q Consensus 445 ~v 446 (516)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 53
No 95
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.07 E-value=1.1e-09 Score=86.62 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=65.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec------CCee
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT------KSET 196 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~------~~~~ 196 (516)
...+..|+.+.|.|.+. |.|.|.+.|++++.++....+...... ...+
T Consensus 12 ~~~~~~~~~~~l~~~v~--------------------------g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s 65 (101)
T cd05859 12 LEFANLHEVKEFVVEVE--------------------------AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVS 65 (101)
T ss_pred eEEEecCCcEEEEEEEE--------------------------EeCCCceEEEECCEECcCCcceEEeccccccceeecc
Confidence 46678899999999999 999999999999999876554332211 2246
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 66 ~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l 97 (101)
T cd05859 66 KLKLIRAKEEDSGLYTALAQNEDAVKSYTFAL 97 (101)
T ss_pred EEEEeeCCHHHCEEEEEEEEcCCceEEEEEEE
Confidence 89999999999999999999999887665543
No 96
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.07 E-value=9.7e-10 Score=85.40 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=62.7
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|+.+.|.|.+.|.|.|.+.|++++..+ ....++.+.. ...|.|.++.. .|+|.|.|.|.|..|.....
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQR-SDVGYYICQTLNVAGSILTK 76 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCCh-hhCEEEEEEEEcCCCceEEE
Confidence 678999999999999999999987642 1233444321 23699999999 99999999999999999999
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|.|....
T Consensus 77 ~~l~V~~~~ 85 (90)
T cd05726 77 AYLEVTDVI 85 (90)
T ss_pred EEEEEeecc
Confidence 999998643
No 97
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.07 E-value=1.8e-09 Score=83.33 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=61.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEee----cCCeeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQT----TKSETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~~ 203 (516)
|+.+.|.|.+. |.|.+.+.|++++..+... .++.+.. ....+.|.|.++
T Consensus 1 g~~~~l~C~~~--------------------------g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~ 54 (88)
T cd05735 1 GQKKEMSCTAH--------------------------GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPT 54 (88)
T ss_pred CCeEEEEEEEE--------------------------CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCC
Confidence 78899999999 9999999999999887643 4555442 122378999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
..+|+|.|+|.+.|..|.......+.+
T Consensus 55 ~~~D~G~YtC~A~N~~G~~~~~~~L~V 81 (88)
T cd05735 55 VREDSGFFSCHAINSYGEDRGIIQLTV 81 (88)
T ss_pred CcccCEEEEEEEEcCCCcceEEEEEEE
Confidence 999999999999999998877665443
No 98
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.06 E-value=7.5e-10 Score=79.92 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=46.0
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.+.|++++..+.. ....+.|.|.++..+|+|.|+|.+.|..|....+..
T Consensus 9 g~P~P~v~W~kdg~~l~~--------~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~ 62 (67)
T cd05863 9 AYPPPEFQWYKDGKLISG--------KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS 62 (67)
T ss_pred EeCCCEEEEEECCEECcc--------cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence 999999999999998852 123469999999999999999999999997666544
No 99
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.05 E-value=2.6e-09 Score=84.43 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=68.1
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccC--CceEE
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIG--GRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~--~~~~~ 189 (516)
||.|. .+....+..|+.+.|.|.+. |.|.+ .+.|++++..+... .++.+
T Consensus 2 pp~i~--~~~~~~~~~G~~v~L~C~~~--------------------------g~P~P~~v~W~~~~~~i~~~~~~r~~i 53 (98)
T cd05758 2 PPIIT--SEATQYAILGDKGRVECFIF--------------------------STPPPDRIVWTWKENELESGSSGRYTV 53 (98)
T ss_pred CCeEc--CCCcEEEeCCCcEEEEEEEc--------------------------ccCCCCEeEEEECCEEccCCCCCCEEE
Confidence 45553 34566789999999999999 99998 69999999888653 46665
Q ss_pred eec----CCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEEEE
Q psy7039 190 QTT----KSETVLDIPFCSR-SDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 190 ~~~----~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
... +..+.|.|.++.. +|.|.|.|.|.|..|.....+.
T Consensus 54 ~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~ 96 (98)
T cd05758 54 ETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIIS 96 (98)
T ss_pred EEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEE
Confidence 533 3346899999999 5589999999999998776543
No 100
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.05 E-value=1.3e-09 Score=81.09 Aligned_cols=70 Identities=29% Similarity=0.442 Sum_probs=56.8
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.|.|++++..+. ...++... . ...|.|.++.. .|.|.|.|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~-~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--R-SGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--C-CcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999999999999999998875 33444432 2 23699999999 9999999999999998 467777766
No 101
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.05 E-value=1.2e-09 Score=84.75 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=58.4
Q ss_pred CCeEEEEEEEeeecCCceEEEEC----CeecCCCCc--eEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVN----GDEVSPDGR--IKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~----~~~l~~~~~--~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
|+.+.|.|.+.|.|.|.|.|+++ +..+..+.. ..+... .....|.|.++.. +|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence 67899999999999999999984 333322221 111111 1235799999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9988888877
No 102
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.04 E-value=7.7e-10 Score=81.20 Aligned_cols=69 Identities=28% Similarity=0.464 Sum_probs=56.6
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+.. .++... ....|.|.++.. +|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTA-GDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCCh-hHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 46899999999999999999876543 344443 234799999999 9999999999999999888877764
No 103
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.04 E-value=1.2e-09 Score=80.19 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=50.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.+.|++++..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..|....+..
T Consensus 9 g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 9 GDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred EeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 99999999999998887666665532 358999999999999999999999998876653
No 104
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.04 E-value=1.3e-09 Score=83.66 Aligned_cols=83 Identities=41% Similarity=0.730 Sum_probs=69.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCe-EEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
++|.+|++..++.+++.|+|.+|. ++++.+.+|.|+++..++.. ............++|.+|.+++.|.|+++|.+..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 478999999999999999999986 67788999999999877732 3333455566799999999999999999999998
Q ss_pred CCCCC
Q psy7039 94 GPGEA 98 (516)
Q Consensus 94 g~~~~ 98 (516)
|.+.+
T Consensus 80 g~g~~ 84 (85)
T PF00041_consen 80 GEGPP 84 (85)
T ss_dssp EEEEE
T ss_pred cCcCC
Confidence 86643
No 105
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.03 E-value=1.8e-09 Score=81.62 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=51.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEee-------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQT-------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..+....+..... ....+.|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 9 G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 9 GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEe
Confidence 99999999999999998765443321 1235689999999999999999999999998776643
No 106
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.03 E-value=1.6e-09 Score=80.89 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=51.5
Q ss_pred CcCceeeEEeeCCeeeccCCceEEe-----ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQ-----TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|+++|++++..+....+.... .....+.|.|.+++.+|+|.|+|.|+|..|....++.+
T Consensus 9 G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 9 GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 9999999999999999876654322 12345689999999999999999999999988766543
No 107
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.02 E-value=1.7e-09 Score=83.34 Aligned_cols=80 Identities=25% Similarity=0.435 Sum_probs=64.0
Q ss_pred cccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-
Q psy7039 362 IRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD- 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~- 438 (516)
+.+..+..|+++.|.|.+ .|.|.|.+.|++++..+.. ..++.... ...|.|.++.. .|.|.|+|.|.|..|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARK-SDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCc-ccCEEEEEEEEeccCcee
Confidence 356788999999999998 7999999999999988765 33443322 34799999999 99999999999999985
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
+..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 4445544
No 108
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.02 E-value=3.4e-09 Score=84.17 Aligned_cols=83 Identities=28% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-----Cce
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-----GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-----~~~ 187 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+... .+.
T Consensus 1 ~P~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~ 53 (100)
T cd07693 1 PPRIV-EHPSDLIVSKGDPATLNCKAE--------------------------GRPTPTIQWLKNGQPLETDKDDPRSHR 53 (100)
T ss_pred CCeEE-ecCceeEEcCCCeEEEEeeCC--------------------------cCCCCEEEEEECCEECccccCCCCcce
Confidence 35555 566778999999999999999 9999999999999888651 122
Q ss_pred EEeecCCeeEEEec--cCCCCCCeeEEEEEEcCCCce
Q psy7039 188 DVQTTKSETVLDIP--FCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 188 ~~~~~~~~~~l~i~--~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.....+....+.|. .++.+|+|.|+|.+.|..|..
T Consensus 54 ~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 54 IVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred EEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccce
Confidence 22223333333333 346899999999999999873
No 109
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.01 E-value=2.1e-09 Score=82.75 Aligned_cols=75 Identities=20% Similarity=0.330 Sum_probs=61.6
Q ss_pred ccceEEecCCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~l 198 (516)
+..+.+.+|+.+.|.|.+ . +.|.+.+.|++++..+.. ..++.+.. ...|
T Consensus 3 p~~~~~~~G~~v~l~C~~~~--------------------------g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L 53 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPR--------------------------GHPEPTVSWRKDGQPLNLDNERVRIVD---DGNL 53 (86)
T ss_pred CccEEEeCCCCEEEEEECCC--------------------------CCCCCEEEEEECCEECCCCCCCEEEcc---CCEE
Confidence 456788899999999998 6 889999999999988775 33444432 4589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
.|.+++.+|+|.|+|.+.|..|....
T Consensus 54 ~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 54 LIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred EEeECCcccCEEEEEEEEeccCceee
Confidence 99999999999999999998887543
No 110
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.01 E-value=1.7e-09 Score=79.93 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=57.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.|.|.+.|.|.|.+.|++++..+... +.. .......|.|.++.. .|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSE-EDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCH-HHCEEEEEEEEeCCceEEEEEEEEE
Confidence 368999999999999999998766432 222 223345799999999 9999999999999999888888776
No 111
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.01 E-value=4.9e-09 Score=81.67 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=63.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEEcCCCc-e
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLVNTVGS-D 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~ 438 (516)
+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.... ......|+|.++.. .|+|.|+|.|.|..|. .
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~~ 84 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTES 84 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCcc
Confidence 45678999999999999999974 999997 565554434444333 33457899999999 9999999999999754 5
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
..++.|.
T Consensus 85 ~~sv~l~ 91 (92)
T cd04977 85 EATVNLK 91 (92)
T ss_pred eeEEEEE
Confidence 6666664
No 112
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.01 E-value=1.7e-09 Score=80.89 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=56.8
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCce---EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRI---KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~---~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.| .|.|.+.|++++..+....+. .+........|.|.++.. .|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 999999999999888654432 233444567899999999 9999999999999998776654
No 113
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.01 E-value=5.2e-09 Score=82.73 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=65.3
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCC--CceEEEEc----CCeEEEEEcCceecCC-ceEEEEEEEcC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPD--GRIKFETS----ENQTIYRNKSAKRATD-SGSYTIQLVNT 434 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~--~~~~~~~~----~~~~~l~i~~~~~~~~-~g~y~c~a~n~ 434 (516)
....+..|+.+.|.|.+.|.|.| .|.|++++..+... .++.+... ...+.|.|.++.. .| .|.|.|.|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~-~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQE-SDFQTSYNCTAWNS 87 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccc-cccceeEEEEEEcC
Confidence 45678999999999999999999 69999999877543 45655443 2235899999998 55 89999999999
Q ss_pred CCceeEEEEE
Q psy7039 435 VGSDSASCKV 444 (516)
Q Consensus 435 ~G~~s~s~~l 444 (516)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998776654
No 114
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.00 E-value=2.6e-09 Score=79.67 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=58.1
Q ss_pred CCeEEEEEEEeeecCCceEEEE-CCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~-~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
|+.+.|.|.+.|.|.|.+.|.+ ++..+....++.... ..+|.|..+.. .|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTV-KDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECCh-hhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 565554444443322 23689999999 9999999999999999888777754
No 115
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.00 E-value=3.5e-09 Score=82.77 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=53.9
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc-eecCCceEEEEEEEcCCCce
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA-KRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~n~~G~~ 438 (516)
.|+.+.|.|.+.|.|.|.+.|++++..+............ ..|.|.++ .. .|.|.|+|.|.|..|..
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~-~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEV-KDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCcc-CcCEEEEEEEEcCCCeE
Confidence 4789999999999999999999999988644333333222 36888887 46 89999999999999985
No 116
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.00 E-value=2.1e-09 Score=83.47 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECC----eecCCC--CceEEEE-------cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNG----DEVSPD--GRIKFET-------SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~----~~l~~~--~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
|+.+.|.|.+.|.|.|.|.|++++ ..+... ....... ......|.|.++.. +|.|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence 578999999999999999999964 222111 1111111 11234799999999 999999999999999
Q ss_pred ceeEEEEEEE
Q psy7039 437 SDSASCKVYV 446 (516)
Q Consensus 437 ~~s~s~~l~v 446 (516)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9998988887
No 117
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.99 E-value=3e-09 Score=80.23 Aligned_cols=70 Identities=17% Similarity=0.377 Sum_probs=56.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.++.+..|+.+.|.|.+.|.|.| .|.|.+++..+... . ....+.|.|.++ .|.|.|.|.|.|..|...
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL---NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc---cCCeEEEEEEEeccCcEE
Confidence 3566889999999999999999999 79999999887531 1 112346888887 567999999999999743
No 118
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.99 E-value=3.8e-09 Score=77.21 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=54.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
|+.+.|.|.+. |.|.|.+.|++++..+....+... ....|.|.+++ |+
T Consensus 1 G~~v~L~C~a~--------------------------G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~ 48 (69)
T cd05739 1 GGSVNLTCVAV--------------------------GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ES 48 (69)
T ss_pred CCeEEEEEEee--------------------------ecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cC
Confidence 67899999999 999999999999988765443322 23479999974 79
Q ss_pred eeEEEEEEcCCCceEEEEE
Q psy7039 209 GHYSLTLENNLGTATASAH 227 (516)
Q Consensus 209 g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|+|.+.|..|....+..
T Consensus 49 G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 49 ANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred eeEEEEEEeCCCEEEEEEE
Confidence 9999999999998776653
No 119
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.99 E-value=3.7e-09 Score=82.69 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=55.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCC-CC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCS-RS 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~ 206 (516)
+|+.+.|.|.+. |.|.+.++|++++..+.......+... ...|.|.++. .+
T Consensus 18 ~g~~v~l~C~~~--------------------------G~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~ 69 (94)
T cd05848 18 DEKKVILNCEAR--------------------------GNPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVK 69 (94)
T ss_pred CCCEEEEEEEee--------------------------ecCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccC
Confidence 478999999999 999999999999998865443333222 2478999985 69
Q ss_pred CCeeEEEEEEcCCCceE
Q psy7039 207 DTGHYSLTLENNLGTAT 223 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~ 223 (516)
|+|.|.|.+.|..|...
T Consensus 70 D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 70 DSGRYQCLATNSIGSIL 86 (94)
T ss_pred cCEEEEEEEEcCCCeEE
Confidence 99999999999998764
No 120
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.99 E-value=5e-09 Score=83.24 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=61.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-----CceEEEEcCCeEEEEEc--CceecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNK--SAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-----~~~~~~~~~~~~~l~i~--~~~~~~~~g~y~c~a~n~ 434 (516)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........+....+.+. .+.. .|.|.|+|.|.|.
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y~C~a~N~ 86 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVYVCVAHNS 86 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEEEEEEEcc
Confidence 45678899999999999999999999999999887541 12222222222233332 2357 9999999999999
Q ss_pred CCc-eeEEEEEEE
Q psy7039 435 VGS-DSASCKVYV 446 (516)
Q Consensus 435 ~G~-~s~s~~l~v 446 (516)
.|. .+..+.|.|
T Consensus 87 ~G~~~s~~~~l~v 99 (100)
T cd07693 87 LGEAVSRNASLEV 99 (100)
T ss_pred ccceecceEEEEe
Confidence 999 666777765
No 121
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.99 E-value=3.3e-09 Score=80.85 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=61.9
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
+.+..|+.+.|.|.+. +.|.+.+.|++++..+....... .......|.|.++
T Consensus 4 ~~~~~G~~v~L~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v 55 (82)
T cd05856 4 IARPVGSSVRLKCVAS--------------------------GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNL 55 (82)
T ss_pred eeccCCCeEEEEEEee--------------------------EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccC
Confidence 4567799999999999 89999999999988775443222 2234568999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.+|+|.|+|.+.|..|.......+
T Consensus 56 ~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 56 KPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred ChhhCEEEEEEEEcCCccEEEEEEE
Confidence 9999999999999999987665543
No 122
>KOG3515|consensus
Probab=98.99 E-value=3.8e-08 Score=101.70 Aligned_cols=355 Identities=14% Similarity=0.012 Sum_probs=210.5
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..+.+......+.+.|+|.|-+....... ..........+|.+.......+...+++.........+
T Consensus 361 ~~~~~q~~~~~~~g~v~c~a~~~~~~~~s----ss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~--------- 427 (741)
T KOG3515|consen 361 ISHYAQPSSQQDGGQVTCPADNLELAHSS----SSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG--------- 427 (741)
T ss_pred EEeeecccchhcCceEEcccccccccccc----ccceeccccCCchhhhhcccceeeccCccccccCcccC---------
Confidence 44555566788999999999776532221 11222223345554434444455555555444333330
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
..+...+.|.+.+..+....+-.++.......+.+.++.+.|.|.|.|.+.|..|.........
T Consensus 428 ----------------~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~ 491 (741)
T KOG3515|consen 428 ----------------APAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLG 491 (741)
T ss_pred ----------------CCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeec
Confidence 3455689999988888765554444334444555777999999999999999999887665422
Q ss_pred cee------e-eeccccCCceEEEEEEEEccCCCCCceecccccccc-------eEEEEEecceeeEEEccCCCCCceEE
Q psy7039 230 GTE------F-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-------RIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 230 ~~~------~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-------~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
... . ......++......|..-. .+...-.+.|.+.... ............+.+........+.|
T Consensus 492 ~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~-~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 570 (741)
T KOG3515|consen 492 VHTSPHNHHLQDQVEGATGNSVDGECMQDE-QPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASET 570 (741)
T ss_pred cccCCcccccccccccCCCCcccceeeccc-cccchhhhcccccCCCCcccccccccccccCCccceeecccccccccce
Confidence 111 1 1122234555566666521 1112233556542111 11111233455666666777778999
Q ss_pred EEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC-CeEE
Q psy7039 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG-EEFT 374 (516)
Q Consensus 296 ~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g-~~~~ 374 (516)
.|.+.+....+.....+.+...+.....+ +..+...+| -.+.
T Consensus 571 ~~~~d~~~~pA~~~~~l~~~s~~~v~~~t-------------------------------------p~~~~~~~g~v~as 613 (741)
T KOG3515|consen 571 ACVVDGSSPPAGLSLVLKAYSALIVTVRT-------------------------------------PNMYTAQEGCVNAS 613 (741)
T ss_pred EEeecCCCCccccceEEEecccccccccC-------------------------------------CceeeeccCccccc
Confidence 99998833233444445544443321110 000111111 2778
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEE-cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
..|.+.+.+...+.|.+.......+.++.... .. ...+..|-+... ...|...|.+.|..|....+..+.--+.+
T Consensus 614 ~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~y~~~c~t~n~lg~~~v~~~~~~~t~~ 692 (741)
T KOG3515|consen 614 DDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHID-GSDYENGCTTQNLLGSDHVSGAIHSGTAS 692 (741)
T ss_pred ccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcc-hhhhcceeeecccCCCccccceecCCcCC
Confidence 89988999999999999876543333322211 11 112233333334 45555999999999998887777666777
Q ss_pred CCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 451 ~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
..| .++.+..++...+.|.|.| .+|++. ...|.++|++.+..
T Consensus 693 ~~~-~n~~~~~~~~~~i~l~~~p-~fdgg~-~q~f~~~~~~~~~~ 734 (741)
T KOG3515|consen 693 VGP-INLTYDNLTYSTISLEWMP-GFDGGL-QQRFFLKYYDLGTM 734 (741)
T ss_pred CCc-cceEeeeeeeeeeceeeee-cccccc-ccceeeehhhcCCc
Confidence 877 8999999999999999995 567766 56699999887654
No 123
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.98 E-value=2.3e-09 Score=81.56 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=56.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCe---e--cCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGD---E--VSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~---~--l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
|+.+.|.|.+.|.|.|.+.|++++. . +...... .+.. .....|.|.++.. .|+|.|.|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV-TNIGQLVIYNAQP-QDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE-ccccEEEEccCCc-ccCEEEEEEEecCCceEEEEEE
Confidence 6789999999999999999999742 1 1111100 1111 1235799999999 9999999999999999888887
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 764
No 124
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.98 E-value=8.1e-09 Score=83.10 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEee--c--CCeeEEEecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQT--T--KSETVLDIPF 202 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~--~--~~~~~l~i~~ 202 (516)
.|..+.|.|.+. |.|.+.+.|++++..+.. +.++.... . ...+.|.|.+
T Consensus 22 ~g~~v~L~C~a~--------------------------G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~ 75 (109)
T cd05773 22 GSSDANLVCQAQ--------------------------GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIIN 75 (109)
T ss_pred CCCEEEEEEECc--------------------------ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECc
Confidence 457899999999 999999999999988864 34554331 1 1246899999
Q ss_pred CC-CCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 203 CS-RSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 203 ~~-~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
+. .+|.|.|+|.|.|..|.....+.+.+
T Consensus 76 v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~ 104 (109)
T cd05773 76 VSAALDYALFTCTAHNSLGEDSLDIQLVS 104 (109)
T ss_pred CCccCCCEEEEEEEEeCCccCcEEEEEEe
Confidence 98 59999999999999998876665443
No 125
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.97 E-value=2.1e-09 Score=78.59 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=47.2
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.|.+.|++++..+....++ . ....|.|.++..+|+|.|+|.+.|..|..+....
T Consensus 9 G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t 65 (70)
T cd05864 9 GYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT 65 (70)
T ss_pred EeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence 9999999999999998754332 1 2357999999999999999999999998766544
No 126
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=2.2e-09 Score=83.75 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=63.6
Q ss_pred ccEEEEcCCeEEEEEEEee-----ecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 363 RDMTVLAGEEFTITVPFSG-----RPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+..+.+|+.+.|.|.+.+ .|.+.|.|++++..+... ....+.. ....|.|..+.. +|+|.|.|.+.|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~-~DsG~Y~C~~~N~~ 83 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAAL-EDSGLYTCVVRNST 83 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCc-ccCeEEEEEEcCCC
Confidence 4567889999999999998 688899999998654321 1122222 234799999999 99999999999999
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|....++.|+|
T Consensus 84 g~~~~~~~L~v 94 (94)
T cd05756 84 YCMKVSISLTV 94 (94)
T ss_pred ccEEEEEEEEC
Confidence 99888887764
No 127
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.97 E-value=2.7e-09 Score=78.66 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=48.6
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+....++. .....|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 9 g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~ 67 (71)
T cd04976 9 AYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF 67 (71)
T ss_pred EeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence 99999999999999887654432 234689999999999999999999999887665543
No 128
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=2.6e-09 Score=83.30 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=60.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-----cCceeeEEeeCCeeeccC--CceEEeecCCe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-----EPFLNHGWSINGQVCQIG--GRADVQTTKSE 195 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~ 195 (516)
...+.+|+++.|.|.+. + .|.+.+.|++++..+... .+.++.. ..
T Consensus 8 ~~~v~~G~~~~L~C~~~--------------------------g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~ 59 (94)
T cd05756 8 KSYVLEGEPVVIKCPLF--------------------------YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QK 59 (94)
T ss_pred EEEEecCCCeEEECCCC--------------------------CcccccCCCceEEEEEcCCCCcccccccceeee--cC
Confidence 45677999999999999 6 688899999988654321 1222322 23
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.++..+|+|.|.|.++|..|.....+.+
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L 92 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISL 92 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEEEE
Confidence 589999999999999999999999887766543
No 129
>KOG3515|consensus
Probab=98.97 E-value=1.5e-08 Score=104.51 Aligned_cols=404 Identities=14% Similarity=0.100 Sum_probs=213.4
Q ss_pred EEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--Ce--------EEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 21 EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NW--------EKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 21 ~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~--------~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.........+.+.|.. ..++.+...|+........ .| ............+.+...+.++.+.|+|.|.
T Consensus 106 e~~~~~~~vvqi~c~~--~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~ 183 (741)
T KOG3515|consen 106 EIFQVDKGVVQIICSA--KVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPAN 183 (741)
T ss_pred chhhhcCCeEEEEEee--cCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccc
Confidence 3344567789999955 2333444444432211000 11 0000010234456777777899999999998
Q ss_pred cCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce
Q psy7039 91 NAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL 170 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 170 (516)
|.............+.+........+. .....-...+|+.+.|.|.+.+ ++|.+
T Consensus 184 nr~s~~l~~~~~~~i~v~~~~~~~~~~-~~~~~qsF~~g~~inlvc~~~g-------------------------g~P~~ 237 (741)
T KOG3515|consen 184 NRNSPGLSFAKQLTIIVEAPCKGIGIT-GAQEQQSFTEGQTINLVCNAQG-------------------------GNPSQ 237 (741)
T ss_pred cccCccccccceeEeecccccccceec-chhhcCcccccceEEEEehhhc-------------------------CCcch
Confidence 854444434444445554443444333 2222356789999999997774 78999
Q ss_pred eeEEeeCCeeeccCCceEEeecC--CeeEEEeccCCCCCCeeEEEEEEcCCCceEEE--EEeece----eeeeccccCCc
Q psy7039 171 NHGWSINGQVCQIGGRADVQTTK--SETVLDIPFCSRSDTGHYSLTLENNLGTATAS--AHVTGT----EFTDNNVHEGK 242 (516)
Q Consensus 171 ~i~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~--~~~~~~----~~~~~~l~~g~ 242 (516)
.++|+++...........-...+ ....+.+..-...+.-...|.+.| ....... ...... ......+..|+
T Consensus 238 ~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 238 QQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGR 316 (741)
T ss_pred hhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccc
Confidence 99999988877654222111111 122333333334444557799987 2221111 111111 11334477788
Q ss_pred eEEEEEEEEccCCCCCceecccccccceE-------EEEE--ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 243 AYEYRVSAVNAAGTEKPKISLDALIGKRI-------KEFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~i~W~~~~~~~~-------~~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.+.+.|.. ..+.|.+.+.|........ .... ......+.+......+.|.|+|.+.+.......+....
T Consensus 317 s~r~~c~~--sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~ 394 (741)
T KOG3515|consen 317 SARSSCVS--SSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFL 394 (741)
T ss_pred ccccceec--cCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccccee
Confidence 88888876 3566778888865110000 0000 11122344556777899999999998775544333333
Q ss_pred EecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEEC
Q psy7039 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVN 392 (516)
Q Consensus 314 v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~ 392 (516)
+...+.+.. |. . ........+.+.......+.++|. +.+.|.+.
T Consensus 395 l~~l~~p~~--L~-~--------------------------------~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~ 439 (741)
T KOG3515|consen 395 LPVLPSPAF--LV-R--------------------------------HKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFR 439 (741)
T ss_pred ccccCCchh--hh-h--------------------------------cccceeeccCccccccCcccCCCcccchhheec
Confidence 322222210 00 0 001111222222222223335544 48999999
Q ss_pred CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
+.++.....-....-.......+.++.. .|.|.|.|.|.|..|.......+.+...|..-.....+..-++++ .+.|-
T Consensus 440 ~~~~~~~~g~~~~v~~~~~~~s~~~v~~-~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns-~~~~~ 517 (741)
T KOG3515|consen 440 LYKLSQVDGGVVRVGAGAGLGSGVNVSR-SDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNS-VDGEC 517 (741)
T ss_pred ceecccccCceEEeeccccccccceeee-ccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCc-cccee
Confidence 8887654432222222222344556888 999999999999999887776666655443321222344445566 55565
Q ss_pred CCCCCCCCCcceEEEEEEecCC
Q psy7039 473 PPLDDGGSPITNYVVEKYESAT 494 (516)
Q Consensus 473 ~p~~~~~~~i~~Y~v~~~~~~~ 494 (516)
.. +....-..|+-+.|..+.
T Consensus 518 ~q--~~~~~~~~m~~~~r~ge~ 537 (741)
T KOG3515|consen 518 MQ--DEQPQDQQMHHEPRSGEP 537 (741)
T ss_pred ec--cccccchhhhcccccCCC
Confidence 32 223334445555554433
No 130
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.96 E-value=9.2e-09 Score=80.09 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=58.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee-cCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT-TKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~-~~~~~~l 198 (516)
+..+.+..|+.+.|.|.+. |.|. .+.|++ ++..+....++.+.. ....++|
T Consensus 7 p~~~~v~~G~~~~l~C~~~--------------------------G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L 59 (92)
T cd04977 7 PSQGEISVGESKFFLCQVI--------------------------GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTL 59 (92)
T ss_pred cCcEEECCCCeEEEEEEeE--------------------------eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEE
Confidence 4457789999999999999 8875 999997 565565545544433 3456799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
.|.+++.+|+|.|+|.+.|..|.
T Consensus 60 ~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 60 TIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCCcccCEEEEEEEEcCCCC
Confidence 99999999999999999998654
No 131
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.96 E-value=6.7e-09 Score=81.23 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=58.4
Q ss_pred CcccceEEecC---CeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCe
Q psy7039 119 STLNDVKIKAG---QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE 195 (516)
Q Consensus 119 ~~~~~~~v~~g---~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 195 (516)
..+..+.+.+| +.+.|.|.+. |.|.+.++|++++..+.......+... .
T Consensus 6 ~~P~~~~~~~~~~g~~v~l~C~a~--------------------------g~P~p~i~W~~~g~~l~~~~~~~~~~~--~ 57 (94)
T cd05850 6 EQPSSLLFPEGSPEEKVTLGCRAR--------------------------ASPPATYRWKMNGTEIKFAPESRYTLV--A 57 (94)
T ss_pred ECCCCEEecCCCCCCeEEEEeEce--------------------------eCCCCEEEEEECCEECccCCCceEEEE--C
Confidence 34455555555 6899999999 999999999999998864322222222 3
Q ss_pred eEEEeccCC-CCCCeeEEEEEEcCCCceEE
Q psy7039 196 TVLDIPFCS-RSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 196 ~~l~i~~~~-~~d~g~Y~c~~~~~~g~~~~ 224 (516)
..|.|.++. ..|+|.|.|.+.|..|....
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 478998865 59999999999999997654
No 132
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.96 E-value=4e-09 Score=78.83 Aligned_cols=61 Identities=28% Similarity=0.448 Sum_probs=49.9
Q ss_pred C-cCceeeEEeeCCeeeccCCceE---EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 166 S-EPFLNHGWSINGQVCQIGGRAD---VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 166 ~-~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
| .|.+.+.|++++..+....+.. +........|.|.+++.+|.|.|+|.+.|..|....+.
T Consensus 9 g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 9 SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 8 8999999999998887554332 43445568999999999999999999999999876554
No 133
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.96 E-value=9.8e-09 Score=80.30 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=56.9
Q ss_pred ccEEEEcC---CeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAG---EEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g---~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G 436 (516)
.+..+.+| +.+.|.|.+.|.|.|.+.|++++..+.... ++.+. . ..|.|.++. . .|.|.|.|.|.|..|
T Consensus 9 ~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~--g~L~I~~~~~~-~D~G~Y~C~A~N~~G 83 (94)
T cd05850 9 SSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--A--GNLVINNPQKA-RDAGSYQCLAINRCG 83 (94)
T ss_pred CCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--C--CeEEEccCCcc-CcCEEEEEEEEcCcC
Confidence 34444444 689999999999999999999998885332 33332 2 358887754 6 899999999999999
Q ss_pred ce-eEEEEE
Q psy7039 437 SD-SASCKV 444 (516)
Q Consensus 437 ~~-s~s~~l 444 (516)
.. +..+.|
T Consensus 84 ~~~s~~a~l 92 (94)
T cd05850 84 TVVSREANL 92 (94)
T ss_pred cEEEEEEEE
Confidence 85 444444
No 134
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.95 E-value=5.4e-09 Score=82.13 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=61.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc--eEEEEcCCeEEEEEcCc-----eecCCceEEEEEEEcC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR--IKFETSENQTIYRNKSA-----KRATDSGSYTIQLVNT 434 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~--~~~~~~~~~~~l~i~~~-----~~~~~~g~y~c~a~n~ 434 (516)
+.+..+..|+++.|.|.+.|.|.|.+.|++++..+..... +.... + ..+.|.++ .. .|.|.|.|.|.|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~-~~l~i~~v~~~~~~~-~D~G~Y~C~a~N~ 81 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP--N-GSLLITSVVHSKHNK-PDEGFYQCVAQND 81 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc--C-CeEEEeeeeccCCCC-CcCEEEEEEEECC
Confidence 4556788999999999999999999999999988865433 22221 2 24556655 46 8999999999999
Q ss_pred -CCce-eEEEEEEE
Q psy7039 435 -VGSD-SASCKVYV 446 (516)
Q Consensus 435 -~G~~-s~s~~l~v 446 (516)
.|.. +..+.|+|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 9985 55666653
No 135
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.95 E-value=4.1e-09 Score=78.94 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=49.0
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceec---CCceEEEEEEEcCCCceeE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA---TDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~---~~~g~y~c~a~n~~G~~s~ 440 (516)
+.|.|.+.|.|.|.+.|++++..+..............+.|.|..+... .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 3689999999999999999998774332222222233346778776541 3789999999999998543
No 136
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.94 E-value=9.9e-09 Score=78.52 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=57.5
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccC---CceE-EeecCCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIG---GRAD-VQTTKSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~~ 203 (516)
+.+.|.|.+. |.|.+ .+.|++++..+... .++. +......++|.|.++
T Consensus 1 ~~~~L~C~a~--------------------------g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v 54 (85)
T cd05854 1 ENLTLQCHAS--------------------------HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNA 54 (85)
T ss_pred CcEEEEEEEe--------------------------cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccC
Confidence 3578999999 88876 68999999887542 2332 222234579999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..|...++..+.
T Consensus 55 ~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 55 QLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred ChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 99999999999999999887776544
No 137
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.93 E-value=4.4e-09 Score=78.57 Aligned_cols=61 Identities=28% Similarity=0.336 Sum_probs=46.5
Q ss_pred CcCceeeEEeeCCeeecc---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQI---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.++|++++..... ..++.+ ......|.|.+++.+|+|.|.|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~~~~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l 72 (75)
T cd05763 9 GHPTPQIAWQKDGGTDFPAARERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL 72 (75)
T ss_pred cccCCEEEEEeCCCccCCcccccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence 999999999998764322 233333 2334589999999999999999999999987665544
No 138
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.93 E-value=5.3e-09 Score=78.49 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcCceeeEEeeCCeeeccCC-ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGG-RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.+.|++++..+.... ++.+. .....|.|.+++.+|+|.|.|.+.|..|....
T Consensus 9 g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 9 GHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred ecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 99999999999999886543 33332 23458999999999999999999999887643
No 139
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.93 E-value=5.9e-09 Score=80.94 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=55.2
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC----CeeeccCCc--eEEee-------cCCe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN----GQVCQIGGR--ADVQT-------TKSE 195 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~----~~~~~~~~~--~~~~~-------~~~~ 195 (516)
|+.+.|.|.+. |.|.|.|.|+++ +..+....+ ..+.. ....
T Consensus 1 G~~v~L~C~~~--------------------------g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (90)
T cd05858 1 GSTVEFVCKVY--------------------------SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEM 54 (90)
T ss_pred CCeEEEEEEEe--------------------------cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCce
Confidence 67899999999 999999999984 333332222 11111 1123
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L 87 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWL 87 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEE
Confidence 689999999999999999999999987766544
No 140
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.93 E-value=3.9e-09 Score=79.24 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=49.4
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce----ecCCceEEEEEEEcCCCcee
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK----RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~----~~~~~g~y~c~a~n~~G~~s 439 (516)
+.|.|.+.|.|.|.+.|++++..+.......+........|.|..+. . .|.|.|.|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~-~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAE-DYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCc-CCCEEEEEEEEcCCCcEE
Confidence 36899999999999999999988754332222333334568887764 3 689999999999999743
No 141
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.93 E-value=4.4e-09 Score=77.57 Aligned_cols=60 Identities=23% Similarity=0.254 Sum_probs=47.9
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... +... ......|.|.+++.+|.|.|+|.+.|..|.......+
T Consensus 9 G~P~P~v~W~k~~~~~~~~-~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 9 GLPTPEVHWDRIDGPLSPN-RTKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred EecCCeEEEEECCcCCCCC-ceeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 9999999999998776543 2222 2345699999999999999999999999987766544
No 142
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.92 E-value=6.7e-09 Score=77.84 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=51.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+....+.++...+....|.|.++..+|.|.|+|.+.|..|.....+.+
T Consensus 9 g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (76)
T cd05736 9 GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL 71 (76)
T ss_pred ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence 999999999999988876544444434455689999999999999999999999987766554
No 143
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.92 E-value=6.5e-09 Score=77.86 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=48.5
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCce---ecCCceEEEEEEEcCCCcee
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAK---RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~---~~~~~g~y~c~a~n~~G~~s 439 (516)
+.|.|.+.|.|.|.+.|++++..+. .+.++.+. .....|.|..+. +.+|.|.|.|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 3689999999999999999998663 33444432 233578887653 21469999999999999753
No 144
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.91 E-value=8.7e-09 Score=77.69 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=58.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+.++.+.+|+++.|.|.+. |.|.| .|+|++++..+.. + .....+.
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~--------------------------G~P~P~~I~W~k~g~~l~~--~----~~~~~s~ 50 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAV--------------------------GPPEPVEILWWQGGSPLGD--P----PAPSPSV 50 (81)
T ss_pred CCCCceEEcCCCCEEEEEEee--------------------------eecCCeEEEEEECCEECCC--C----CCCCCCE
Confidence 345668899999999999999 99999 7999999988753 1 1223458
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.++ .|.|.|.|.|+|..|....
T Consensus 51 L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 51 LNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EEEccc--cCCeEEEEEEEeccCcEEe
Confidence 889887 4789999999999996654
No 145
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.91 E-value=2.5e-08 Score=84.42 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
.|.|.+++..|+|.|.|.+.+..|.....+.|.|..+|....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~-------------------------------------- 43 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRL-------------------------------------- 43 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEE--------------------------------------
Confidence 689999999999999999999888888888888876554321
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cC-CceEEEECCeecCC----CCceE---EEE--cCC---eEEEEEcCceecCCceE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PK-PTPIWTVNGDEVSP----DGRIK---FET--SEN---QTIYRNKSAKRATDSGS 426 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~l~~----~~~~~---~~~--~~~---~~~l~i~~~~~~~~~g~ 426 (516)
.+.......|..+.|.|.+.|. |. ..|.|++++..... ..... ... ++. .+.|.+..-.. ++...
T Consensus 44 ~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~-~~g~~ 122 (139)
T cd05771 44 SLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE-DAGAT 122 (139)
T ss_pred eCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc-CCCCE
Confidence 1122333478889999999986 43 38999999854211 01110 111 111 13566655444 55679
Q ss_pred EEEEEEcCCC
Q psy7039 427 YTIQLVNTVG 436 (516)
Q Consensus 427 y~c~a~n~~G 436 (516)
|.|.+.+...
T Consensus 123 ytC~V~H~~l 132 (139)
T cd05771 123 YTCRVSHVSL 132 (139)
T ss_pred EEEEEEcCCC
Confidence 9999977643
No 146
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.91 E-value=8.6e-09 Score=80.04 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=57.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEeecCCeeEEEe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i 200 (516)
|+.+.|.|.+. +.|.+.+.|++++..+ ....++.+.. ...|.|
T Consensus 1 G~~v~L~C~~~--------------------------g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I 51 (90)
T cd05726 1 GRTVTFQCEAT--------------------------GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTI 51 (90)
T ss_pred CCEEEEEEECC--------------------------ccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEE
Confidence 68899999999 9999999999987543 1233444422 347999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
.+++.+|+|.|.|.+.|..|.......+.+
T Consensus 52 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 81 (90)
T cd05726 52 TNVQRSDVGYYICQTLNVAGSILTKAYLEV 81 (90)
T ss_pred eeCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 999999999999999999998776655444
No 147
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.91 E-value=7.6e-09 Score=75.86 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=47.3
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+.+.|++++..+. ..++.+. ....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 g~P~p~v~W~k~~~~~~-~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 67 (69)
T cd05725 9 GDPVPTVLWRKEDGELP-KGRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL 67 (69)
T ss_pred cCCCCEEEEEECCccCC-CCcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence 99999999999877654 3344443 33589999999999999999999999987765543
No 148
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.90 E-value=5e-09 Score=78.61 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=45.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC----CCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR----SDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.++|++++..+.......+........|.|.++.. +|+|.|.|.+.|..|....
T Consensus 9 G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 9 GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred ccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 9999999999999888644333333344466888988854 7899999999999987543
No 149
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.89 E-value=7.8e-09 Score=79.15 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCeEEEEEEEeee--cCCceEEEECCeecCCCC----ceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 370 GEEFTITVPFSGR--PKPTPIWTVNGDEVSPDG----RIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 370 g~~~~l~C~~~g~--p~~~i~W~~~~~~l~~~~----~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
|+.+.|.|.+.+. |.+.+.|.+++..+.... +.. .........|.|.+++. .|+|.|.|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCceEEEE
Confidence 6889999999999 788999998776542211 111 11112346899999999 999999999999999998888
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8876
No 150
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.89 E-value=1.6e-08 Score=75.27 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=56.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
|+.+.|.|.+. |.|.+.+.|++ ++..+....+..... ..+|.|.++..+|
T Consensus 1 G~~~~l~C~~~--------------------------g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D 51 (74)
T cd05764 1 GQRATLRCKAR--------------------------GDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKD 51 (74)
T ss_pred CCeEEEEEEcc--------------------------CcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhh
Confidence 68899999999 99999999997 555555444443322 3479999999999
Q ss_pred CeeEEEEEEcCCCceEEEEEe
Q psy7039 208 TGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 208 ~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.|.|+|.+.|..|.....+.+
T Consensus 52 ~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 52 TGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CEEEEEEEECCCCeEEEEEEE
Confidence 999999999999987665543
No 151
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.89 E-value=1.5e-08 Score=78.99 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=53.3
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEeecCCeeEEEeccCC-CC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQTTKSETVLDIPFCS-RS 206 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~ 206 (516)
|..+.|.|.+. |.|.+.++|++++..+.. ..++.+. ...|.|.++. .+
T Consensus 19 ~~~v~l~C~a~--------------------------G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~ 68 (93)
T cd05849 19 EGKVSVNCRAR--------------------------ANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYK 68 (93)
T ss_pred CCeEEEeCcCc--------------------------cCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCC
Confidence 34799999999 999999999999988753 3344332 3589999985 69
Q ss_pred CCeeEEEEEEcCCCceEE
Q psy7039 207 DTGHYSLTLENNLGTATA 224 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~ 224 (516)
|+|.|.|.+.|..|....
T Consensus 69 D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 69 DAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCEEEEEEEEeCcceEEE
Confidence 999999999999987644
No 152
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.88 E-value=1e-08 Score=75.11 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=51.8
Q ss_pred EEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+.|.|.|.+.|++++..+... .++. .. ..+|.|.++.. +|+|.|+|.|.|..........+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~-~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTE-EDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCH-HHCEEEEEEEEccccceEeeEEE
Confidence 58999999999999999999887654 3332 22 23799999999 99999999999986654444433
No 153
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.88 E-value=3e-08 Score=77.24 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=67.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCC--CCceEEEEc----CCeEEEEEcCceecCC-ceEEEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSP--DGRIKFETS----ENQTIYRNKSAKRATD-SGSYTIQLVN 433 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~--~~~~~~~~~----~~~~~l~i~~~~~~~~-~g~y~c~a~n 433 (516)
.+...+..|+.+.|.|.+.+.|+| .|.|.+.+..+.. ..+|.+... +..+.|+|.++.. .| .|.|.|.|.|
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~Y~C~a~N 86 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTHYNCTAWN 86 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcEEEEEEEe
Confidence 456788999999999999999888 6899988877644 357777654 3668999999987 56 7999999999
Q ss_pred CCCceeEEEEE
Q psy7039 434 TVGSDSASCKV 444 (516)
Q Consensus 434 ~~G~~s~s~~l 444 (516)
..|.+...+.|
T Consensus 87 ~~G~d~~~i~L 97 (98)
T cd05898 87 SFGSGTAIIQL 97 (98)
T ss_pred CCccceEEEEe
Confidence 99998776654
No 154
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.87 E-value=7.9e-09 Score=80.18 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=54.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC----eeeccCC--ceEEee-------cCCe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING----QVCQIGG--RADVQT-------TKSE 195 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~----~~~~~~~--~~~~~~-------~~~~ 195 (516)
|+.+.|.|.+. |.|.|.|+|++++ ..+.... ...+.. .+..
T Consensus 1 G~~v~l~C~v~--------------------------g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (90)
T cd04974 1 GSDVEFHCKVY--------------------------SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNES 54 (90)
T ss_pred CCcEEEEEEEe--------------------------CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCccccccc
Confidence 67899999999 9999999999853 2222111 111111 1234
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..|.|.+++.+|+|.|+|.|.|..|...+++.+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L 87 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWL 87 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEE
Confidence 589999999999999999999999987766544
No 155
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.86 E-value=1.1e-08 Score=76.64 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=43.6
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC----CCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR----SDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|+++|++++..+.......+......++|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 9 G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 9 GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred ccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 9999999999999887433332233334455788877764 3789999999999997654
No 156
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.85 E-value=2.2e-08 Score=76.81 Aligned_cols=74 Identities=23% Similarity=0.321 Sum_probs=56.2
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCC---ceE-EeecCCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGG---RAD-VQTTKSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~ 203 (516)
+.+.|.|.+. +.|.+ .+.|++++..+.... ++. .......+.|.|.++
T Consensus 1 e~~~L~C~~~--------------------------g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v 54 (85)
T cd04970 1 ESITLQCHAS--------------------------HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNA 54 (85)
T ss_pred CcEEEEEEEe--------------------------cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccC
Confidence 4678999999 88876 678999998876432 222 222334678999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..|....+..+.
T Consensus 55 ~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 55 QLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 99999999999999988776655443
No 157
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.84 E-value=2.2e-08 Score=77.98 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCce-eEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSD-SASCKV 444 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~-s~s~~l 444 (516)
|..+.|.|.+.|.|.|.+.|++++..+.. ..++.+. . ..|.|.++. . .|.|.|.|.|.|..|.. +..+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~--g~L~I~~~~~~-~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--G--GNLVINNPDKY-KDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--C--CEEEECcCCcC-CCCEEEEEEEEeCcceEEEccEEE
Confidence 44799999999999999999999988753 3344332 2 468998875 6 89999999999999985 334444
No 158
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.84 E-value=2e-08 Score=75.20 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=54.6
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCC----CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.+ .|.+.+.|++++..+... .++..........|.|.++.. .|+|.|.|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCceeEEEe
Confidence 368999874 577899999999887532 223444444567899999999 9999999999999998777654
No 159
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.84 E-value=1.3e-08 Score=74.61 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=43.6
Q ss_pred CcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 166 SEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
|.|.|.+.|++++.++... .++.. . ..+|.|.+++.+|+|.|+|.+++.......
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 9 AFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred EcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEe
Confidence 9999999999999987654 33322 2 247999999999999999999987555443
No 160
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.84 E-value=1.9e-08 Score=75.35 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=43.7
Q ss_pred CcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCC----CCCCeeEEEEEEcCCCceEEE
Q psy7039 166 SEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCS----RSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~----~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
|.|.|.++|++++..+.. ..++.+ .....+|.|.++. .+|+|.|.|.+.|..|.....
T Consensus 9 G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 9 GNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred ccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 999999999999987643 344443 3344688898764 246999999999999976543
No 161
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.83 E-value=1.3e-08 Score=75.07 Aligned_cols=60 Identities=27% Similarity=0.348 Sum_probs=47.3
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.|.+.|++++..+... +... ......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 9 g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 9 GLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred EecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 9999999999998776532 2222 2345689999999999999999999999987665543
No 162
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.83 E-value=2.4e-08 Score=74.76 Aligned_cols=61 Identities=25% Similarity=0.422 Sum_probs=48.2
Q ss_pred CcCceeeEEeeCCeeeccC----CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 166 SEPFLNHGWSINGQVCQIG----GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+.|.+.+.|++++..+... .++.+........|.|.+++.+|+|.|+|.+.|..|....++
T Consensus 10 ~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 10 EYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 3678899999999888532 233444445667999999999999999999999998876654
No 163
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.83 E-value=2.2e-08 Score=75.88 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeecc---CCceEEeec-CCeeEEEeccC
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQI---GGRADVQTT-KSETVLDIPFC 203 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~ 203 (516)
+++.|.|.+. + .+.+.+.|++++..+.. ..++..... ...+.|.|.++
T Consensus 1 ~~~~l~C~v~--------------------------~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv 54 (85)
T cd05853 1 ESIVLPCQVS--------------------------HDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSI 54 (85)
T ss_pred CcEEEEEEec--------------------------cCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecC
Confidence 3678999998 5 45788999999999962 224433211 34568999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+..|+|.|+|.+.|..+...++..+.
T Consensus 55 ~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 55 QLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CHHHCEEEEEEEEcccCceEEEEEEE
Confidence 99999999999999988877665443
No 164
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.83 E-value=1.4e-08 Score=75.55 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=44.6
Q ss_pred CcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.|.+.|++++..+.. ..++... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 9 G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~ 64 (74)
T cd05738 9 GNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTR 64 (74)
T ss_pred EecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCce
Confidence 999999999999988763 3444442 23479999999999999999999998874
No 165
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.83 E-value=1.9e-08 Score=76.92 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=56.0
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCCeeeccCCc-----eEEeecCCeeEEEec
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSINGQVCQIGGR-----ADVQTTKSETVLDIP 201 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~ 201 (516)
|+.+.|.|.+. +. |.+.+.|.+++..+..... .........+.|.|.
T Consensus 1 Ge~~~L~C~~~--------------------------g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~ 54 (84)
T cd05742 1 GETLVLNCTVL--------------------------TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIP 54 (84)
T ss_pred CCeEEEEEEEE--------------------------eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEEC
Confidence 78899999999 88 8899999987765532211 111112345799999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+++.+|+|.|+|.+.|..|....+..+
T Consensus 55 ~v~~~DsG~Y~C~a~n~~~~~~~s~~v 81 (84)
T cd05742 55 NATLKDSGTYTCAASSGTMDQKESTKV 81 (84)
T ss_pred CCChhhCEEEEEEEccCCCceEEEEEE
Confidence 999999999999999998887766544
No 166
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.81 E-value=2.3e-08 Score=75.55 Aligned_cols=70 Identities=30% Similarity=0.419 Sum_probs=52.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecC--------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEE
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVS--------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCK 443 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~--------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~ 443 (516)
+.|.|.+.|.|.|.+.|++++.... ...++... ...+|.|.++.. .|.|.|.|.|.|..|.. +.++.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~ 76 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMV 76 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEE
Confidence 4689999999999999999643211 22333332 225799999999 99999999999999985 55555
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|+|
T Consensus 77 l~~ 79 (79)
T cd05734 77 LTV 79 (79)
T ss_pred EeC
Confidence 543
No 167
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.81 E-value=3.6e-08 Score=75.27 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCC----ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC--ceeEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDG----RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG--SDSASCK 443 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~----~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G--~~s~s~~ 443 (516)
|+.+.|.|.+.+.|.+.+.|.+.+....... +..+........|.|.+++. .|+|.|.|.|.|..+ ..+.++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence 6889999999999999999998775432111 11111112246899999999 999999999999876 5677777
Q ss_pred EEEe
Q psy7039 444 VYVV 447 (516)
Q Consensus 444 l~v~ 447 (516)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7774
No 168
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.81 E-value=5.4e-08 Score=74.62 Aligned_cols=81 Identities=31% Similarity=0.419 Sum_probs=64.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE-EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF-ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~-~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.. ........|.|.++.. .|.|.|.|.+.|..|....++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCceEEEEEE
Confidence 4567899999999999999999999999987754433332 2233445799999999 9999999999999998877776
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 653
No 169
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.80 E-value=5.4e-08 Score=76.10 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=62.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC--------CeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN--------GDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~--------~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
..++.+.+|+.+.|.|.+.+.|.+.+.|++. +.....+.++.... .....+|.|.++.. .|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeE
Confidence 4678899999999999999999999999853 22222345665533 23557899999999 99999999999
Q ss_pred cCCCceeEEEEEEE
Q psy7039 433 NTVGSDSASCKVYV 446 (516)
Q Consensus 433 n~~G~~s~s~~l~v 446 (516)
+..+ .+.++.|+|
T Consensus 83 t~~~-~~~~~~l~v 95 (95)
T cd07701 83 TMPV-KTSKAYLTV 95 (95)
T ss_pred eecC-ccEEEEEEC
Confidence 8533 366666654
No 170
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.80 E-value=5e-08 Score=76.06 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=61.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
..+..+..|+.+.|.|.+.+.|.+.|.|.+.+..+ ..+.++.+... .....|.|.++.. .|.|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEE
Confidence 35678999999999999999999999999877532 12344443332 2357899999999 99999999998
Q ss_pred cCCCceeEEEEEE
Q psy7039 433 NTVGSDSASCKVY 445 (516)
Q Consensus 433 n~~G~~s~s~~l~ 445 (516)
.. -..+..+.|+
T Consensus 83 t~-~~~~~~~~~~ 94 (95)
T cd05882 83 TM-PVRTAKATVT 94 (95)
T ss_pred ee-ccccEEEEEE
Confidence 82 2344444444
No 171
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.78 E-value=8.9e-08 Score=74.61 Aligned_cols=87 Identities=24% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeecc--CCceEE
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQI--GGRADV 189 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~--~~~~~~ 189 (516)
||.| .......+.+|+.+.|.|.+. +.|.| .|.|...+..+.. ..++.+
T Consensus 2 pP~i--~~~~s~~~~~G~~~~L~C~~~--------------------------s~P~P~~i~W~w~~~~i~~~~~~r~~I 53 (98)
T cd05898 2 PPII--SSEQVQYAVRGERGKVKCFIG--------------------------STPPPDRIAWAWKENVLESGTSERYTV 53 (98)
T ss_pred CCEE--ecCceEEEeCCCcEEEEEEEc--------------------------cCCCCcEEEEEEccccccCCCCCCEEE
Confidence 4544 455667888999999999997 66665 6789888777654 357777
Q ss_pred eec----CCeeEEEeccCCCCC-CeeEEEEEEcCCCceEEEEE
Q psy7039 190 QTT----KSETVLDIPFCSRSD-TGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 190 ~~~----~~~~~l~i~~~~~~d-~g~Y~c~~~~~~g~~~~~~~ 227 (516)
... +..+.|.|.++...| .|.|.|.+.|..|.....+.
T Consensus 54 ~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~ 96 (98)
T cd05898 54 ERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQ 96 (98)
T ss_pred EEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEE
Confidence 643 578899999998866 79999999999998876554
No 172
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.78 E-value=4.8e-08 Score=75.97 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=53.1
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC-C
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR-S 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~ 206 (516)
.|..+.|.|.+. |.|.+.++|++++..+.......+.. ....|.|.++.. +
T Consensus 18 ~~~~~~l~C~~~--------------------------g~p~p~i~W~k~~~~l~~~~~~~~~~--~~~~L~i~~~~~~~ 69 (91)
T cd04967 18 DEGKVSLNCRAR--------------------------GSPPPTYRWLMNGTEIDDEPDSRYSL--VGGNLVISNPSKAK 69 (91)
T ss_pred CCCEEEEEEeee--------------------------EcCCCEEEEEECCEECCCCCCCCEEE--ECCEEEEecCCccC
Confidence 346799999999 99999999999998885332222221 234789998874 9
Q ss_pred CCeeEEEEEEcCCCceEE
Q psy7039 207 DTGHYSLTLENNLGTATA 224 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~ 224 (516)
|+|.|+|.++|..|....
T Consensus 70 d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 70 DAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEEEcCCCEEEe
Confidence 999999999999987543
No 173
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.78 E-value=4.6e-08 Score=74.66 Aligned_cols=66 Identities=17% Similarity=0.348 Sum_probs=50.1
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC----ceEEeecCCeeEEEeccCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG----RADVQTTKSETVLDIPFCS 204 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~ 204 (516)
|+++.|+|.+. +.|.+.+.|.+++....... +..+........|.|.+++
T Consensus 1 Ge~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~ 54 (84)
T cd05861 1 GETITVNCIVQ--------------------------GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHAT 54 (84)
T ss_pred CCcEEEEEEEE--------------------------CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCC
Confidence 78899999999 88999999998765432211 1111222336799999999
Q ss_pred CCCCeeEEEEEEcCCC
Q psy7039 205 RSDTGHYSLTLENNLG 220 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g 220 (516)
.+|+|.|.|.+.|..+
T Consensus 55 ~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 55 VEDSGTYECAAHESTQ 70 (84)
T ss_pred cCCCEEEEEEEEECcc
Confidence 9999999999998765
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.78 E-value=4e-08 Score=74.65 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe---ee-ccCCce--EEeecCCeeEEEecc
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ---VC-QIGGRA--DVQTTKSETVLDIPF 202 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~---~~-~~~~~~--~~~~~~~~~~l~i~~ 202 (516)
|+.+.|.|.+. |.|.+.+.|+++.. .+ ...... .+. ......|.|.+
T Consensus 1 G~~v~l~C~~~--------------------------g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~ 53 (81)
T cd05765 1 GETASFHCDVT--------------------------GRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYN 53 (81)
T ss_pred CCcEEEEeecc--------------------------ccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEcc
Confidence 67899999999 99999999999632 11 111111 111 12346899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++.+|+|.|.|.+.|..|.......+
T Consensus 54 ~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 54 AQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcccCEEEEEEEecCCceEEEEEEE
Confidence 99999999999999999987765543
No 175
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.77 E-value=4.5e-08 Score=76.83 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=58.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLD 199 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (516)
.+....+.+|+++.|.|.+. |.|.+.+.|++++..+....+...... ....|.
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~-~~~~l~ 57 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAE--------------------------GEPPPKIEWKKDGVLLNLVSDERRQQL-PNGSLL 57 (95)
T ss_pred CCCCeEEcCCCCEEEeeecc--------------------------cCCCCEEEEEECCeECccccCcceEEc-cCCeEE
Confidence 44557778999999999999 999999999999998875433211111 123566
Q ss_pred eccC-----CCCCCeeEEEEEEcC-CCceE
Q psy7039 200 IPFC-----SRSDTGHYSLTLENN-LGTAT 223 (516)
Q Consensus 200 i~~~-----~~~d~g~Y~c~~~~~-~g~~~ 223 (516)
|.++ ++.|.|.|.|.+.|. .|...
T Consensus 58 i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 58 ITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred EeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 7666 689999999999999 88763
No 176
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.77 E-value=7.5e-08 Score=75.31 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--------eeccCCceEEee-
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--------VCQIGGRADVQT- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--------~~~~~~~~~~~~- 191 (516)
++++.+.+|+++.|.|.+. +.|.+.+.|++.+. ......|+.+..
T Consensus 4 ~~~v~v~eG~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~ 57 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVD--------------------------QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA 57 (95)
T ss_pred cceEEEecCCcEEEEEEEe--------------------------cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC
Confidence 4568899999999999999 88999999986332 222345665532
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....+|.|.+++.+|+|.|.|.+.+..
T Consensus 58 ~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 58 SWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred CCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 2455799999999999999999998743
No 177
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.77 E-value=2.9e-08 Score=74.33 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=51.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..|+...+.+|+++.|+|.+. +.|. ..+.|++++..+.. ....
T Consensus 5 ~~P~~~~v~~G~~V~L~C~~~--------------------------~~p~~~~~~W~kng~~l~~----------~~~~ 48 (78)
T cd05752 5 LDPPWTTIFQGEKVTLTCNGF--------------------------NSPEQNSTQWYHNGKLLET----------TTNS 48 (78)
T ss_pred eCCCCeEeeCCCCEEEEEeCC--------------------------CCCCCccEEEEECCEEeec----------cCCe
Confidence 345667889999999999999 7665 47999999987631 2457
Q ss_pred EEeccCCCCCCeeEEEEEEcC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.|.++ .+|+|.|+|.+.+.
T Consensus 49 l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 49 YRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred EEEeec-ccCCEEeEEECCCC
Confidence 999999 99999999999764
No 178
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.75 E-value=3.8e-08 Score=74.91 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLD 199 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~ 199 (516)
|.+..+..|+++.|.|... + +.+.+.|++++..+... .++.+. ...|.
T Consensus 3 P~~~~v~~G~~v~L~C~~~--------------------------~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~ 51 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPK--------------------------S-NLARVVWKFDGKVLTPESAKYLLY----RDGLL 51 (87)
T ss_pred cceEEEECCCCEEEEEECC--------------------------C-CCCeEEEEECCEECCCCCceEEEE----CCcEE
Confidence 4568899999999999976 5 56789999999998765 344332 24699
Q ss_pred eccCCCCCCeeEEEEEEcC
Q psy7039 200 IPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+++.+|+|.|+|.+.+.
T Consensus 52 I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 52 IFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EeCCCHHHCEEEEEEEEec
Confidence 9999999999999999864
No 179
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.74 E-value=5.1e-08 Score=74.76 Aligned_cols=77 Identities=25% Similarity=0.269 Sum_probs=60.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
..+..+.+.+|+.++|.|.+.+ +.|.+.+.|++++..+... . ......|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~-------------------------~~~~~~i~W~~~~~~~~~~--~----~~~~~~L 54 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKS-------------------------KSPAYTLVWTRVGGGLPSR--A----MDFNGIL 54 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCC-------------------------CCCCcEEEEEECCCcCCCc--c----cccCCEE
Confidence 5566788999999999999871 3678899999987654321 1 1234589
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.+++.+|+|.|.|.+.|..|......
T Consensus 55 ~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 55 TIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 9999999999999999999998877654
No 180
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.73 E-value=2e-07 Score=72.65 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=55.6
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEeec-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQTT- 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~~- 192 (516)
.++.+.+|+++.|+|.+. +.|.+.+.|++++..+ ....|+.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~--------------------------g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~ 58 (95)
T cd05882 5 QDETVAVGGTVTLKCGVK--------------------------EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST 58 (95)
T ss_pred ccEEEecCCcEEEEEEEe--------------------------CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC
Confidence 457899999999999999 8999999998876532 12345544322
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.....|.|.+++.+|+|.|+|.+..
T Consensus 59 ~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 59 PTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred CceEEEEECCCCcccCEEEEEEEEe
Confidence 3467999999999999999999876
No 181
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.72 E-value=7.2e-08 Score=74.67 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=61.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-ce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-SD 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-~~ 438 (516)
+..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ...+.... ..|.|.++.. .|+|.|.|.|.|..+ ..
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSP-ADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCH-HHCEEEEEEEecCcccee
Confidence 35567899999999999987 778999999997765432 11222222 3489999999 999999999997654 45
Q ss_pred eEEEEEEEe
Q psy7039 439 SASCKVYVV 447 (516)
Q Consensus 439 s~s~~l~v~ 447 (516)
..+..|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 666777664
No 182
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.71 E-value=6.9e-08 Score=74.04 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=61.5
Q ss_pred ccccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+....+..|+.++|.|.+.+ .|.+.+.|++++..+... .. .....|.|.++.. .|+|.|.|.|.|..|...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~----~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM----DFNGILTIRNVQL-SDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc----ccCCEEEECCCCH-HHCEEEEEEEeccCCeEe
Confidence 345678899999999999975 678899999988654321 11 1234799999999 999999999999999988
Q ss_pred EEEEE
Q psy7039 440 ASCKV 444 (516)
Q Consensus 440 ~s~~l 444 (516)
.++.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 87665
No 183
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.70 E-value=2.2e-07 Score=71.14 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=61.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE-eecCCeeEEEecc
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV-QTTKSETVLDIPF 202 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~ 202 (516)
+.+..|+.+.|.|.+. +.|.+.+.|++++..+........ ........|.|.+
T Consensus 4 ~~~~~G~~~~l~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~ 57 (85)
T cd05729 4 HAVPAGSTVRLKCPAS--------------------------GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILES 57 (85)
T ss_pred eEecCCCcEEEEEEcC--------------------------CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeE
Confidence 4567899999999999 889999999999888765443332 2233446899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+..+|.|.|.|.+.|..|....+..
T Consensus 58 ~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 58 VVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred CCcccCEEEEEEEEECCceEEEEEE
Confidence 9999999999999998887665543
No 184
>KOG0196|consensus
Probab=98.68 E-value=1.2e-06 Score=89.75 Aligned_cols=82 Identities=32% Similarity=0.491 Sum_probs=65.2
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEE-------eEEee----cCCcEEEeCCCcC
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK-------AVVVP----AGETSCTVPGLIE 79 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~-------~~~~~----~~~~~~~i~~l~~ 79 (516)
..+|++|.+|... ++.+++.|.|.+|...||-.-..|.|.+++-+..-.. +...+ -.+++.++.+|.+
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 5789999999776 9999999999999988887788999988875431111 11111 2468899999999
Q ss_pred CCeEEEEEEEecCC
Q psy7039 80 GETYQFQVRAVNAA 93 (516)
Q Consensus 80 ~~~y~~~~~a~n~~ 93 (516)
...|.|.+.|+|..
T Consensus 408 h~~YTFeV~AvNgV 421 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGV 421 (996)
T ss_pred ccccEEEEEEeecc
Confidence 99999999999955
No 185
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.68 E-value=9e-08 Score=74.10 Aligned_cols=71 Identities=21% Similarity=0.152 Sum_probs=54.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l 198 (516)
+..+.+.+|+++.|.|... + |.+.+.|++++..+.... +.++... ...|
T Consensus 3 ~~~~~v~~g~~v~L~C~~~--------------------------~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L 53 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPK--------------------------S-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGL 53 (89)
T ss_pred ceEEEEECCCcEEEEEeCC--------------------------C-CCceEEEEECCcccccccCcCceEEEc--CCCE
Confidence 4557789999999999988 6 778999999988775442 1222222 2359
Q ss_pred EeccCCCCCCeeEEEEEEcCCC
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|.+++.+|+|.|+|.+.+..+
T Consensus 54 ~I~~~~~~D~G~Y~C~a~~~~~ 75 (89)
T cd04979 54 LIRSVSPADAGVYTCQSVEHGF 75 (89)
T ss_pred EEccCCHHHCEEEEEEEecCcc
Confidence 9999999999999999987543
No 186
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.68 E-value=1.5e-07 Score=73.24 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=51.5
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCcee
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s 439 (516)
.|..+.|.|.+.|.|.+.+.|++++..+............ ..|.|.++. . .|.|.|+|.|.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~--~~L~i~~~~~~-~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVG--GNLVISNPSKA-KDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEEC--CEEEEecCCcc-CCCEEEEEEEEcCCCEEE
Confidence 4467999999999999999999999887432222222222 358887765 5 899999999999999743
No 187
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.67 E-value=1.3e-07 Score=73.32 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=58.0
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|....|.|...+ .+...+|.+.+.|++++..+....+... ....|.|.++
T Consensus 5 ~~~~~g~~~~l~Cp~~~---------------------~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v 59 (92)
T cd05757 5 QILFSTKGGKIVCPDLD---------------------DFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNV 59 (92)
T ss_pred EEEeeccCCEEECCChH---------------------HccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeC
Confidence 45778999999998761 0001246789999999998875443322 4569999999
Q ss_pred CCCCCeeEEEEEEcCCCceEEE
Q psy7039 204 SRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
..+|+|.|+|.+.|..+.....
T Consensus 60 ~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 60 TEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred ChhhCEEEEEEEEecCCCEEEE
Confidence 9999999999999987765444
No 188
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.66 E-value=5.8e-08 Score=72.72 Aligned_cols=62 Identities=27% Similarity=0.409 Sum_probs=51.0
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.++...+.+|+.++|.|.+.+.|.+ .+.|++++..+.. ....|.|.++ . +|+|.|+|.|.|.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~-~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-N-NDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-c-cCCEEeEEECCCC
Confidence 3456789999999999999998764 7999999976521 2246889899 8 9999999999875
No 189
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.65 E-value=2.1e-07 Score=70.80 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=55.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
+.+..+..|+++.|.|.+.+ +.+.+.|.+++..+..+ .++.+. . ..|.|.++.. .|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~--~--~~L~I~nv~~-~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY--R--DGLLIFNASE-ADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE--C--CcEEEeCCCH-HHCEEEEEEEEecc
Confidence 46678999999999999864 66799999999988655 344332 2 3599999999 99999999999875
No 190
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.65 E-value=1.2e-07 Score=73.52 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=55.8
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec--------------cCCceEE
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ--------------IGGRADV 189 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~--------------~~~~~~~ 189 (516)
+.+.+|+.++|.|.+. +.+.+.+.|++++.... ..+|+..
T Consensus 2 v~~~~G~~VtL~C~~s--------------------------~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~ 55 (94)
T cd07690 2 VLGKKGDTAELPCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 55 (94)
T ss_pred eEeeCCCCEEEEEEeC--------------------------CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCce
Confidence 5678999999999999 88889999986553221 1234444
Q ss_pred ee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 190 QT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 190 ~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.. ..+...|.|.+++.+|+|.|.|.+.|..+..+
T Consensus 56 ~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 56 RRNLWDQGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred ecccCCCCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 33 34457899999999999999999988665543
No 191
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.65 E-value=7.9e-08 Score=74.29 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=57.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--ccCCceEEeecCCeeE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--QIGGRADVQTTKSETV 197 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~~~~~ 197 (516)
....+.+.+|+.+.|.|.... +.|.+.+.|++++..+ ..+.|..+ ....+.
T Consensus 9 ~~~~~~v~eG~~~~L~C~pP~-------------------------g~P~p~~~W~k~~~~~~~~~d~r~~~--~~~~G~ 61 (96)
T cd05727 9 ERDEVKVKEGWGVVLFCDPPP-------------------------HYPDLSYRWLLNEFPNFIPEDGRRFV--SQTNGN 61 (96)
T ss_pred CcCceeeeeCCcEEEeeCCCC-------------------------CCCCCEEEEEECCcccccccCCCeEE--eCCCCc
Confidence 334577899999999997662 8899999999998754 22333322 334669
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+++.+|+|.|.|.++|....
T Consensus 62 L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 62 LYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred EEEeecCHhhCceeEEEEEecccC
Confidence 999999999999999999986543
No 192
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.64 E-value=1.6e-07 Score=72.78 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=59.5
Q ss_pred cEEEEcCCeEEEEEEEeee-----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 364 DMTVLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
...+..|....|.|...+. |.|.+.|++++..+....... . ....|.|.++.. +|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~-~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTE-EDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCCh-hhCEEEEEEEEecCCCE
Confidence 3567889999999987532 567999999999887544332 2 335799999999 99999999999998886
Q ss_pred eEEEEEE
Q psy7039 439 SASCKVY 445 (516)
Q Consensus 439 s~s~~l~ 445 (516)
...+..+
T Consensus 79 ~~~~t~t 85 (92)
T cd05757 79 QYNVTRT 85 (92)
T ss_pred EEEEEEE
Confidence 5554333
No 193
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.63 E-value=5.3e-07 Score=69.76 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=68.0
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCCCCceEEEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSPDGRIKFETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~~~~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+.+..|+.+.|.|.+++.|+|. +.|.+++..+.....-...... ..+.|.+..+.. .+.|.|+|.|.|..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCC
Confidence 457899999999999999999996 9999998766433321112211 236799999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998875
No 194
>smart00409 IG Immunoglobulin.
Probab=98.60 E-value=1.1e-06 Score=66.91 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=67.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+....++..........|.|.++.. .|.|.|.|.+.+..+......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999888889999998 7776655666666655567899999999 999999999999888876666
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6655
No 195
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.60 E-value=1.1e-06 Score=66.91 Aligned_cols=82 Identities=29% Similarity=0.484 Sum_probs=67.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
...+..|+++.|.|.+.+.+.+.+.|.++ +..+....++..........|.|.++.. .|.|.|.|.+.+..+......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEEEEE
Confidence 45678999999999999888889999998 7776655666666655567899999999 999999999999888876666
Q ss_pred EEEE
Q psy7039 443 KVYV 446 (516)
Q Consensus 443 ~l~v 446 (516)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 6655
No 196
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.60 E-value=1.7e-07 Score=72.23 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=59.4
Q ss_pred ccccCcccceEEecCCeEEEEEe-eeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee-ccCCceEEeec
Q psy7039 115 RIDRSTLNDVKIKAGQSFSFDVK-EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC-QIGGRADVQTT 192 (516)
Q Consensus 115 ~~~~~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~-~~~~~~~~~~~ 192 (516)
.+.....+.+.+.+|+++.|.|. .. |.|.+.|.|+.++... ..+.|+.+.
T Consensus 4 ~~~~~~~~~v~V~eG~~~~L~C~pP~--------------------------g~P~P~i~W~~~~~~~i~~~~Ri~~~-- 55 (95)
T cd05845 4 KWPKEKIRPVEVEEGDSVVLPCNPPK--------------------------SAVPLRIYWMNSDLLHITQDERVSMG-- 55 (95)
T ss_pred cCCccccceeEEecCCCEEEEecCCC--------------------------CCCCCEEEEECCCCccccccccEEEC--
Confidence 33335567799999999999997 56 8999999999876543 334444432
Q ss_pred CCeeEEEeccCCCCCCe-eEEEEEEcCCC
Q psy7039 193 KSETVLDIPFCSRSDTG-HYSLTLENNLG 220 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g 220 (516)
..+.|.|.+++..|.| .|.|.+.+...
T Consensus 56 -~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 56 -QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred -CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 3479999999999999 79999998653
No 197
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.57 E-value=2.1e-07 Score=70.20 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=41.0
Q ss_pred CcCceeeEEeeCCeeec--------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQ--------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.|.+.|++++.... ...++.+. ...+|.|.++..+|+|.|.|.+.|..|..
T Consensus 9 G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 70 (79)
T cd05734 9 GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGAD 70 (79)
T ss_pred EeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence 99999999999643221 12333332 23689999999999999999999998865
No 198
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.54 E-value=1.6e-06 Score=65.95 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=63.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC-CeeeccCCceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+..|+.+.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.
T Consensus 3 ~~~~~~g~~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~ 56 (86)
T smart00410 3 SVTVKEGESVTLSCEVS--------------------------GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTIS 56 (86)
T ss_pred cEEEeCCCeEEEEEEEc--------------------------cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEE
Confidence 46678999999999999 777889999998 777765666666655557899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
++...|+|.|.|.+.+..+.....
T Consensus 57 ~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 57 NVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred eeccccCeEEEEEEEcCCCeEEEE
Confidence 999999999999999776665443
No 199
>smart00409 IG Immunoglobulin.
Probab=98.54 E-value=1.6e-06 Score=65.95 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=63.1
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC-CeeeccCCceEEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+..|+.+.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.
T Consensus 3 ~~~~~~g~~~~l~C~~~--------------------------~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~ 56 (86)
T smart00409 3 SVTVKEGESVTLSCEVS--------------------------GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTIS 56 (86)
T ss_pred cEEEeCCCeEEEEEEEc--------------------------cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEE
Confidence 46678999999999999 777889999998 777765666666655557899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
++...|+|.|.|.+.+..+.....
T Consensus 57 ~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 57 NVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred eeccccCeEEEEEEEcCCCeEEEE
Confidence 999999999999999776665443
No 200
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.52 E-value=3.9e-07 Score=64.88 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=50.6
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSD 207 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 207 (516)
+|+.+.|.|.+. +.+.+.+.|++++..+. ..... ......|.|.+++..|
T Consensus 1 ~g~~~~l~C~~~--------------------------~~~~~~v~W~~~~~~~~--~~~~~--~~~~~~L~i~~~~~~d 50 (63)
T smart00408 1 EGQSVTLTCPAE--------------------------GDPVPNITWLKDGKPLP--ESNRL--SASGSTLTIKSVSLED 50 (63)
T ss_pred CCceEEEEeeCc--------------------------cCCCCeEEEEECCEECC--CCCEE--ecCCcEEEEeeCCccc
Confidence 478899999988 88889999999888776 22222 3345689999999999
Q ss_pred CeeEEEEEEcCCC
Q psy7039 208 TGHYSLTLENNLG 220 (516)
Q Consensus 208 ~g~Y~c~~~~~~g 220 (516)
+|.|+|.+.|..|
T Consensus 51 ~G~Y~C~~~n~~g 63 (63)
T smart00408 51 SGEYTCVAENSAG 63 (63)
T ss_pred CEEEEEEEecCCC
Confidence 9999999988654
No 201
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.51 E-value=1.1e-06 Score=68.96 Aligned_cols=83 Identities=23% Similarity=0.324 Sum_probs=60.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCee--------cCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--------VSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~--------l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.+++.+.+|+.+.|.|.+.+.+.+.+.|++.+.. ...+.++.... ......|.|.++.. .|+|.|.|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEe
Confidence 3567899999999999998888889999752221 01234555532 23446799999999 99999999999
Q ss_pred cCCCceeEEEEEEE
Q psy7039 433 NTVGSDSASCKVYV 446 (516)
Q Consensus 433 n~~G~~s~s~~l~v 446 (516)
+... .+.++.|+|
T Consensus 83 ~~~~-~~~~~~~~v 95 (95)
T cd05717 83 TMPV-QTAKATVTV 95 (95)
T ss_pred cCCC-ceEEEEEEC
Confidence 8753 455555554
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.51 E-value=1.3e-06 Score=68.40 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=53.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--------ccCCceEEee-c
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--------QIGGRADVQT-T 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--------~~~~~~~~~~-~ 192 (516)
+.+.+.+|+++.|.|.+. +.+.+.+.|++.+..+ ....|+.+.. .
T Consensus 5 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~ 58 (95)
T cd05717 5 QDVTVVEGGTATLKCRVK--------------------------NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS 58 (95)
T ss_pred CcEEEcCCCCEEEEEEEC--------------------------CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC
Confidence 457789999999999998 6677788887532211 1234665532 2
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.....|.|.+++.+|+|.|.|.+.+..
T Consensus 59 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 59 ANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred CCeeEEEEccCCcccCEEEEEEEecCC
Confidence 345689999999999999999998654
No 203
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.48 E-value=5.1e-07 Score=64.29 Aligned_cols=63 Identities=30% Similarity=0.490 Sum_probs=50.7
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+|+.+.|.|.+.+.+.+.+.|++++..+. .... .......|.|.++.. .|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LSASGSTLTIKSVSL-EDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--EecCCcEEEEeeCCc-ccCEEEEEEEecCCC
Confidence 47889999999888889999999988775 1211 223345799999999 999999999999865
No 204
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.48 E-value=3.5e-07 Score=69.50 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=55.8
Q ss_pred cEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEE
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SAS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s 441 (516)
...+.+|+.++|.|.+.+ .+.+.+.|++++..+.. ......|.|..+.. .|+|.|+|.|.|..|.. +..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCH-HHCEEEEEEEEeCCceecCCC
Confidence 346889999999999854 55668999999975531 11235799999999 99999999999999863 444
Q ss_pred EEEE
Q psy7039 442 CKVY 445 (516)
Q Consensus 442 ~~l~ 445 (516)
..|+
T Consensus 79 ~~i~ 82 (83)
T cd05753 79 VSIT 82 (83)
T ss_pred EEEE
Confidence 4443
No 205
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.47 E-value=2.3e-06 Score=72.42 Aligned_cols=116 Identities=10% Similarity=0.133 Sum_probs=72.3
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
+|+|.+++..|.|.|.|.+.+..|... ....+.+. .+|.+. ..+.......|+.+.|.|.+.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~l~v~---~~P~v~-~~~~~~~~~~~~~~~L~C~a~----------- 63 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ---QIIQLSVS---EPPRVR-LSLEKLVSMIEEPQTLICHIA----------- 63 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee---eEEEEEEe---cCCceE-EeCCCceeecCCcEEEEEEEC-----------
Confidence 689999999999999999987544322 22222222 466665 233344445788999999999
Q ss_pred cccccccCccceeecCc-Cc-eeeEEeeCCeeecc-----CCc----eEEeecCC---eeEEEeccCCCCCCeeEEEEEE
Q psy7039 151 ALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQI-----GGR----ADVQTTKS---ETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~-----~~~----~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
+. |. +.|.|++++..... ... .....++. .+.|.|.....++...|.|.+.
T Consensus 64 ---------------g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~ 128 (139)
T cd05771 64 ---------------GYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVS 128 (139)
T ss_pred ---------------CCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEE
Confidence 63 54 68999998754211 111 11111221 2466666555555668999987
Q ss_pred cCC
Q psy7039 217 NNL 219 (516)
Q Consensus 217 ~~~ 219 (516)
+..
T Consensus 129 H~~ 131 (139)
T cd05771 129 HVS 131 (139)
T ss_pred cCC
Confidence 643
No 206
>PHA03376 BARF1; Provisional
Probab=98.47 E-value=2.2e-06 Score=72.61 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=82.7
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-----cCCceEEeecCCeeE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-----IGGRADVQTTKSETV 197 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-----~~~~~~~~~~~~~~~ 197 (516)
.+.+..|+.+.|.|... |....++|.+.|++.+.....+.-++++.... ...+..+....++.+
T Consensus 20 pVta~VGEda~LsC~ln-----------p~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvs 88 (221)
T PHA03376 20 AVTAFLGERVTLTSYWR-----------RVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFF 88 (221)
T ss_pred chhheeCCcEEEEeccc-----------CccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEE
Confidence 46778899999999987 44445888888888542123333233322221 123444445568889
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---eeec----cccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---FTDN----NVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~~~~----~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
|.|.+++.+|.|.|+|..+..........+..... ..+. .........++|. ..|.|.|.+.|..
T Consensus 89 LvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~---sggfP~P~~~Wle 160 (221)
T PHA03376 89 LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCT---VNAFPHPHVQWLM 160 (221)
T ss_pred EEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEe---cCCcCCchheecc
Confidence 99999999999999999987665554444333222 1111 2222445566676 4999999999964
No 207
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.45 E-value=1e-06 Score=67.49 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCC---C--c-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPD---G--R-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~---~--~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|+++.|.|.+.+.+.+ .+.|...+...... . + .........+.|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecceEeccc
Confidence 6789999999876644 77998877543110 1 1 1101122346899999999 99999999999999988888
Q ss_pred EEEEEe
Q psy7039 442 CKVYVV 447 (516)
Q Consensus 442 ~~l~v~ 447 (516)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888775
No 208
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.45 E-value=3e-06 Score=65.62 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=53.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cCCeeEEEe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TKSETVLDI 200 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i 200 (516)
+++.+.+|+++.|.|.+.+ ..+..+.|.+.+ ..+.|+.+.... .+.|+.... .+...+|.|
T Consensus 5 ~nvtv~~G~ta~L~C~v~~--------------~~~~~v~w~~~~---~~~i~~~~~~~~-~d~Rf~~~~~~~~~~tL~I 66 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKN--------------NDDSVIQLLNPN---RQTIYFRDVRPL-KDSRFQLVNFSSNELRVSL 66 (95)
T ss_pred CceEEcCCCcEEEEEEEcc--------------CCccEEEEEecC---CcEEEecCcccc-CCcCEEEEeCCCCEEEEEE
Confidence 5588999999999999991 002223444322 334444443333 567887664 455678999
Q ss_pred ccCCCCCCeeEEEEEEc
Q psy7039 201 PFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~ 217 (516)
.+++.+|+|.|.|.+..
T Consensus 67 ~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 67 SNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CcCCcccCEEEEEEEEc
Confidence 99999999999999875
No 209
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=6.8e-07 Score=64.26 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=46.4
Q ss_pred CCeEEEEEee-eeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCe--eEEEeccCCC
Q psy7039 129 GQSFSFDVKE-FRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE--TVLDIPFCSR 205 (516)
Q Consensus 129 g~~~~l~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~ 205 (516)
|+.+.|.|.+ . +.+...+.|.+++................. ..|.|.+++.
T Consensus 1 G~~v~L~C~~~~--------------------------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 54 (64)
T PF00047_consen 1 GSSVTLTCSVSS--------------------------GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP 54 (64)
T ss_dssp TSEEEEEEEEEE--------------------------SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG
T ss_pred CCeEEEEeecCC--------------------------CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH
Confidence 7899999999 6 788899999998876654433333222221 1399999999
Q ss_pred CCCeeEEEEE
Q psy7039 206 SDTGHYSLTL 215 (516)
Q Consensus 206 ~d~g~Y~c~~ 215 (516)
+|+|.|+|.+
T Consensus 55 ~d~G~Y~C~v 64 (64)
T PF00047_consen 55 EDSGTYTCVV 64 (64)
T ss_dssp GGTEEEEEEE
T ss_pred HHCEEEEEEC
Confidence 9999999985
No 210
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.44 E-value=7.3e-07 Score=69.08 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=54.3
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecC--------------CCCceEEEE---cCCeEEEEEcCceecCCceEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--------------PDGRIKFET---SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--------------~~~~~~~~~---~~~~~~l~i~~~~~~~~~g~y 427 (516)
+.+..|++++|.|.+.+.+.+.+.|++++.... ...++.... ..+...|+|.++.. .|+|.|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEE
Confidence 356889999999999998889999997653321 122333332 33456799999999 999999
Q ss_pred EEEEEcCCCc
Q psy7039 428 TIQLVNTVGS 437 (516)
Q Consensus 428 ~c~a~n~~G~ 437 (516)
.|.+.|..+.
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999998764
No 211
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.42 E-value=6.6e-07 Score=69.17 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred cccEEEEcCCeEEEEEEE-eeecCCceEEEECCeec--CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 362 IRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l--~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.....+.+|+.+.|.|.. .|.|.+.+.|.+++..+ ..+.+..+. ...+.|.|.++.. .|.|.|.|.|+|.....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGNLYIAKVEA-SDRGNYSCFVSSPSSTK 86 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCcEEEeecCH-hhCceeEEEEEecccCC
Confidence 345678999999999976 68899999999998754 223333322 3345799999999 99999999999987543
No 212
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.41 E-value=9.4e-07 Score=67.17 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=52.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|++++|+|...+ +.+..++.|++++..+.. ......|.|.++
T Consensus 9 ~~V~~G~~vtL~C~~~~-------------------------~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~ 55 (83)
T cd05753 9 RVVFEGEPLVLRCHGWK-------------------------NKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQA 55 (83)
T ss_pred ceecCCCCEEEEeeCCC-------------------------CCcceEEEEEECCeEccc--------cCCCceEEECcc
Confidence 45889999999999861 456678999999876542 123458999999
Q ss_pred CCCCCeeEEEEEEcCCCc
Q psy7039 204 SRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~ 221 (516)
+.+|+|.|+|.+.+..+.
T Consensus 56 ~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 56 TLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred CHHHCEEEEEEEEeCCce
Confidence 999999999999988764
No 213
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.38 E-value=1.9e-06 Score=66.63 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=57.4
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec----CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE-cCCC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV----SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV-NTVG 436 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l----~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~-n~~G 436 (516)
.+.+.+|+.+.|.|.. +.|.+.+.|++... .. ....++... ...|.|.++.+ .|+|.|.|.|. |..+
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~-~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQR-SDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCCh-hHCEEEEEEEEccCCe
Confidence 4567899999999996 47888999998432 11 112333322 24599999999 99999999998 4666
Q ss_pred ceeEEEEEEEec
Q psy7039 437 SDSASCKVYVVD 448 (516)
Q Consensus 437 ~~s~s~~l~v~~ 448 (516)
.....+.|+|..
T Consensus 79 ~~~~~~~l~v~~ 90 (91)
T cd05871 79 QTLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEEec
Confidence 666677777753
No 214
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.38 E-value=2.1e-06 Score=64.69 Aligned_cols=71 Identities=34% Similarity=0.503 Sum_probs=55.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCK 443 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~ 443 (516)
..+..|+.+.|.|.+.+.|.+.+.|++++..+... .+. +.+..+.. ++.|.|+|.|.+..+. .+.++.
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------~~~--~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------QNG--LFIPNVSP-EDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------SSE--EEESSEEG-GGTEEEEEEEEETTEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------eee--eeeeeecc-ccCEEEEEEEEeCCCCeEeeeEE
Confidence 56899999999999999988999999988665421 111 66788899 9999999999996653 555566
Q ss_pred EEE
Q psy7039 444 VYV 446 (516)
Q Consensus 444 l~v 446 (516)
|+|
T Consensus 78 v~V 80 (80)
T PF13895_consen 78 VTV 80 (80)
T ss_dssp EEE
T ss_pred eeC
Confidence 654
No 215
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.37 E-value=1.7e-06 Score=66.30 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=50.9
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCCeeeccC---C--ceE-EeecCCeeEEEe
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSINGQVCQIG---G--RAD-VQTTKSETVLDI 200 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~~~~~~~---~--~~~-~~~~~~~~~l~i 200 (516)
|+++.|.|.+. +.+ ...+.|..++...... . +.. .......+.|.|
T Consensus 1 Ge~~~L~C~~~--------------------------~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I 54 (86)
T cd05862 1 GEKLVLNCTAR--------------------------TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTI 54 (86)
T ss_pred CCcEEEEEEEE--------------------------eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEE
Confidence 78899999998 654 5688998877643211 1 111 111234679999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.+++..|+|.|+|.+.|..|......
T Consensus 55 ~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 55 ENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred ecCCcccCEEEEEEEeecceEecccE
Confidence 99999999999999999777554443
No 216
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.34 E-value=2.4e-06 Score=66.09 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=48.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--ee----ccCCceEEeecCCee
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--VC----QIGGRADVQTTKSET 196 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--~~----~~~~~~~~~~~~~~~ 196 (516)
.+.+.+|+++.|.|.. +.|.+.+.|++.+. .. ....++.. ...
T Consensus 5 ~~~~~eG~~v~L~C~~---------------------------~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~----~~~ 53 (91)
T cd05871 5 VVYGVENNSTFLECLP---------------------------KSPQASVKWLFQRGGDQRKEEVKTEERLIH----TER 53 (91)
T ss_pred EEEEecCCcEEEEEEC---------------------------CCCCceEEEEEECCCCCccccccccccEEE----ecC
Confidence 3567899999999985 45788999998432 21 11233332 224
Q ss_pred EEEeccCCCCCCeeEEEEEEc-CCCce
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN-NLGTA 222 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~-~~g~~ 222 (516)
.|.|.+++.+|+|.|+|.+.+ ..+..
T Consensus 54 ~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 54 GLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred eEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 699999999999999999984 44433
No 217
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.30 E-value=3.1e-06 Score=63.75 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=50.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+.+|+.+.|.|.+. +.|...+.|++++..+.... ..|.|.++
T Consensus 9 ~~v~~g~~~~l~C~~~--------------------------~~p~~~~~w~~~~~~~~~~~----------~~~~~~~~ 52 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVS--------------------------GNPPPQVQWYKNGSPINSSQ----------NGLFIPNV 52 (80)
T ss_dssp SEEETTSEEEEEEEEE--------------------------SSSSSEEEEEETTEEEEEES----------SEEEESSE
T ss_pred eEEeCCCcEEEEEEEE--------------------------cccceeeeeeeeeeeeeeee----------eeeeeeee
Confidence 5688999999999999 88889999999887765221 12778899
Q ss_pred CCCCCeeEEEEEEcCCC
Q psy7039 204 SRSDTGHYSLTLENNLG 220 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g 220 (516)
+.+|.|.|+|.+.+..+
T Consensus 53 ~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 53 SPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EGGGTEEEEEEEEETTE
T ss_pred ccccCEEEEEEEEeCCC
Confidence 99999999999988554
No 218
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.30 E-value=2.8e-06 Score=61.03 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=46.0
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCe--EEEEEcCceecCCceEEEEEE
Q psy7039 370 GEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQ--TIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 370 g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~--~~l~i~~~~~~~~~g~y~c~a 431 (516)
|+.+.|.|.+ .+.+...+.|.+++..+.............. ..|.|.++.. +|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence 7889999999 6677779999999976654433333332222 1399999999 9999999986
No 219
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.29 E-value=6.6e-06 Score=65.17 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=57.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------CCceEEee---cCCeeEEE
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------GGRADVQT---TKSETVLD 199 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------~~~~~~~~---~~~~~~l~ 199 (516)
|+++.|.|.+. + ........+.|.+ ..+...+.|+.++..... ..|+.+.. ..+..+|.
T Consensus 1 G~~v~L~C~~~-------~----~~~~~~~~v~W~k-~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~ 68 (100)
T cd05713 1 GEDAELPCHLS-------P----KMSAEHMEVRWFR-SQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALR 68 (100)
T ss_pred CCcEEEEeEEc-------C----CCCCCeeEEEEEE-CCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEE
Confidence 68899999987 1 1123455688877 445566777776544321 13444432 23567999
Q ss_pred eccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 200 IPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
|.+++.+|+|.|.|.+.+..+..+..+
T Consensus 69 I~~v~~~D~G~Y~C~v~~~~~~~~~~i 95 (100)
T cd05713 69 IHNVRASDEGLYTCFFQSDGFYEEATV 95 (100)
T ss_pred EEcCChhhCEEEEEEEecCCcEEEEEE
Confidence 999999999999999998766554444
No 220
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.25 E-value=4.9e-06 Score=64.62 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=56.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE---EeecCCeeEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD---VQTTKSETVL 198 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~l 198 (516)
....+.+|+++.|+|... ++| ++..-..+ .....+++|++++.......... .+.......|
T Consensus 8 ~~~~~~~GE~v~l~C~~~--~~~----~~~~~~~~---------~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~L 72 (104)
T cd05896 8 KKYMVLAGEPVRIKCALF--YGY----IRTNYSMA---------QSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSI 72 (104)
T ss_pred eeEEEcCCCeEEEECCCc--ccc----cccccccc---------ccCCceEEEEECCCCCCCCCcccccceeEEEeCCEE
Confidence 346788999999999974 000 11000000 11234899999875444322100 1222345689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.++..+|+|.|+|.++|........+
T Consensus 73 wf~Pa~~eDSG~Y~C~~rN~t~C~~~~i 100 (104)
T cd05896 73 WFRPAELQDSGLYTCVLRNSTYCMKVSM 100 (104)
T ss_pred EEEeCChhhCeEEEEEECCCCcceEEEE
Confidence 9999999999999999998776555443
No 221
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.24 E-value=1.7e-05 Score=61.40 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=56.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--------CCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--------SPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--------~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.+++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.+|.... .+...+|.|.+++. .|.|.|.|.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEE
Confidence 35688999999999999998876677887655322 2456777665 45566899999999 99999999997
Q ss_pred cC
Q psy7039 433 NT 434 (516)
Q Consensus 433 n~ 434 (516)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 53
No 222
>KOG0196|consensus
Probab=98.23 E-value=1.1e-05 Score=82.94 Aligned_cols=103 Identities=29% Similarity=0.370 Sum_probs=82.4
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
.+|.|.+-+..|.+...++....+.++++|+|..|..+++ .|..|+|+|++.+.............++.+|.+|+|++.
T Consensus 432 a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~ 510 (996)
T KOG0196|consen 432 ASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTV 510 (996)
T ss_pred eeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cceeEEEEEeeccccccceeEEecccceEEeeccCCCcE
Confidence 4567777888999999999999999999999999875554 599999999987531222222334678999999999999
Q ss_pred EEEEEEEecCCCCCCCCCCCcceE
Q psy7039 83 YQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
|.|+|+|....|.+..+.....-+
T Consensus 511 YvfqVRarT~aG~G~~S~~~~fqT 534 (996)
T KOG0196|consen 511 YVFQVRARTAAGYGPYSGKHEFQT 534 (996)
T ss_pred EEEEEEEecccCCCCCCCceeeee
Confidence 999999999999988776654444
No 223
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.22 E-value=4.3e-06 Score=64.55 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=57.6
Q ss_pred ccccEEEEcCCeEEEEEE-EeeecCCceEEEECCeec-CCCCceEEEEcCCeEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 361 SIRDMTVLAGEEFTITVP-FSGRPKPTPIWTVNGDEV-SPDGRIKFETSENQTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~-~~g~p~~~i~W~~~~~~l-~~~~~~~~~~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
..+...+.+|+.+.|.|. ..|.|.|.|.|.+++... ..+.++.+. .+ +.|.|.++.. .|.| .|.|.|.|....
T Consensus 9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--~~-GnL~fs~v~~-~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--QN-GNLYFANVEE-QDSHPDYICHAHFPGLR 84 (95)
T ss_pred ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--CC-ceEEEEEEeh-hhCCCCeEEEEEccccc
Confidence 456688999999999997 699999999999876542 334444332 22 6799999999 9999 799999998644
No 224
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.20 E-value=1.8e-05 Score=61.32 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=62.5
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCc--eEEeec---CCe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGR--ADVQTT---KSE 195 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~--~~~~~~---~~~ 195 (516)
..+.|.+|+.+.|.|.+. +.|.+. +.|.+++..+..... +..+.. ...
T Consensus 11 ~~~~v~~gE~~~L~V~ie--------------------------AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~ 64 (101)
T cd05860 11 TTIFVNAGENLDLIVEYE--------------------------AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYV 64 (101)
T ss_pred ceEEEECCCCEEEEEEEE--------------------------eCCCCeeeEEEcCCcccCccccceeEEeccCceEEE
Confidence 457799999999999999 999997 999998776643322 222211 134
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|.+..+..+|+|.|+|.+.|..........+
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l 97 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNV 97 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEE
Confidence 799999999999999999999988776655443
No 225
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.20 E-value=2.6e-05 Score=59.88 Aligned_cols=85 Identities=49% Similarity=0.882 Sum_probs=65.6
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
|.+|.++.+......++.|+|.+|.... ..+..|.|.+...+. .|............+.|.+|.+++.|.+++++.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 5677888888778899999999975332 357899999987653 66655443346789999999999999999999987
Q ss_pred CCCCCCC
Q psy7039 93 AGPGEAS 99 (516)
Q Consensus 93 ~g~~~~s 99 (516)
.|.+.++
T Consensus 80 ~~~~~~s 86 (93)
T cd00063 80 GGESPPS 86 (93)
T ss_pred CccCCCc
Confidence 6665443
No 226
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.18 E-value=9.4e-06 Score=65.43 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee--------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV--------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~--------------~~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+...+.|++.... ....
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~ 56 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYS--------------------------TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEK 56 (109)
T ss_pred ecCCceEEcCCCCEEEEEEEC--------------------------CCCccEEEEEEECCCCCeEEEEEEecCCCcccC
Confidence 345568899999999999998 555566677663210 0123
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.|+.+... ....+|.|.+++.+|+|.|.|.+.+..
T Consensus 57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 55655432 367899999999999999999998643
No 227
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.16 E-value=6.5e-06 Score=63.70 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCC
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCS 204 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 204 (516)
.+..|.+..|.|.-.+ .| . ...+.+.++|++++..+....+.... ......|.|.++.
T Consensus 6 ~~~~~~~~~l~Cp~~~--~f------------------~-~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~ 63 (95)
T cd05897 6 ILFTSTSGKLVCPDLS--DF------------------T-INRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVS 63 (95)
T ss_pred EeccccCcEEECCCHH--Hc------------------c-cCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcC
Confidence 4567889999997431 00 0 13467799999999988754322211 1234579999999
Q ss_pred CCCCeeEEEEEEcCCCce
Q psy7039 205 RSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g~~ 222 (516)
.+|+|.|+|.+.+..+..
T Consensus 64 ~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 64 LNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred hhhCEEEEEEEEEeeCCE
Confidence 999999999999876544
No 228
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.16 E-value=5e-06 Score=62.81 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=53.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
+.+.+..|+++.|.|... +. .+.+.|++++..+..+.++..... .|.|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~--------------------------s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~ 52 (85)
T cd05872 4 KNRTVAPGADVVLPCQLR--------------------------SN-LASPVWLFNGTPLNAQFSYRVGTD----GLLIL 52 (85)
T ss_pred eEEEEecCCCEEEECCCC--------------------------CC-CccEEEEECCcccCCCcceEEeCC----CCEEE
Confidence 457899999999999987 54 669999999999876666554433 38899
Q ss_pred cCCCCCCeeEEEEEE
Q psy7039 202 FCSRSDTGHYSLTLE 216 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~ 216 (516)
.++..|+|.|.|.+.
T Consensus 53 ~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 53 VTSPEHSGTYRCYSE 67 (85)
T ss_pred ECCHhhCEEEEEEEe
Confidence 999999999999986
No 229
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.15 E-value=9.2e-06 Score=62.87 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=53.5
Q ss_pred EEEEcCCeEEEEEEE-e----eecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 365 MTVLAGEEFTITVPF-S----GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~----g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+..|....|.|+- + ..+.+.+.|+|++..+..+...... ..+.+.|.|.++.. +|+|.|+|.|.+..|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-~~~~~~L~I~~v~~-~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-LKGSTYLHIIDVSL-NDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-cCCCCEEEEEEcCh-hhCEEEEEEEEEeeCCE
Confidence 456788899999973 2 3456689999999988644322211 12334699999999 99999999999997664
No 230
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.11 E-value=7.7e-06 Score=60.90 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=41.8
Q ss_pred CcCceeeEEeeCCeeeccCCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|++.|+|++++.++......... .....+.|.|.....+|.+.|+|.+.|..+..
T Consensus 11 skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 11 SKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred ccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 8999999999999998643211000 00123579999999999999999999976643
No 231
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.10 E-value=4.9e-06 Score=61.67 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=41.3
Q ss_pred EEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCee
Q psy7039 132 FSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGH 210 (516)
Q Consensus 132 ~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 210 (516)
+.|.|.+. +.+ .+.+.|+ ...... .............|.|.++..+|.|.
T Consensus 18 ~~l~C~~~--------------------------~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~ 68 (75)
T PF13927_consen 18 VTLTCSAE--------------------------GGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGT 68 (75)
T ss_dssp EEEEEEES--------------------------SEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEE
T ss_pred EEEEEEEc--------------------------cccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcE
Confidence 99999999 666 8999999 111111 11122224456799999999999999
Q ss_pred EEEEEEc
Q psy7039 211 YSLTLEN 217 (516)
Q Consensus 211 Y~c~~~~ 217 (516)
|+|.++|
T Consensus 69 y~C~a~N 75 (75)
T PF13927_consen 69 YTCIASN 75 (75)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999976
No 232
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.10 E-value=2.9e-05 Score=58.86 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=47.8
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEE-EEcCC----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKF-ETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~-~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
+.|.|.+.| .|.+.+.|++++..+........ ...+. .+.|.|..... ++.+.|+|.|.|..........
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s 77 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETS 77 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEE
Confidence 579999987 68889999999988753321111 11111 24677877777 8889999999998765443333
No 233
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.08 E-value=2.7e-05 Score=58.87 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=57.9
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
+...+..|..+.|.|...+. ...+.|.+++..+..+.++.... . -|.|..+.. .|+|.|.|.+. +.|.....+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~--~--GLlI~~~~~-~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT--D--GLLILVTSP-EHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC--C--CCEEEECCH-hhCEEEEEEEe-cCCCeEEEE
Confidence 55788999999999999776 55999999999886655554432 2 277889999 99999999987 556654444
Q ss_pred EEE
Q psy7039 443 KVY 445 (516)
Q Consensus 443 ~l~ 445 (516)
.+.
T Consensus 77 ~y~ 79 (85)
T cd05872 77 SYS 79 (85)
T ss_pred EEE
Confidence 333
No 234
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.04 E-value=1.9e-05 Score=63.10 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=50.8
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee-eEEeeCCe-e--eccCCceEEeecC--CeeE
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN-HGWSINGQ-V--CQIGGRADVQTTK--SETV 197 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~-i~W~~~~~-~--~~~~~~~~~~~~~--~~~~ 197 (516)
.+.+|+.++|.|.+.. .+....+.|++... ..+. +....... . .....|+.+.... ...+
T Consensus 2 ~v~~G~~v~L~C~~~~-------------~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 68 (105)
T cd00099 2 SVSEGESVTLSCTYSG-------------SFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFT 68 (105)
T ss_pred eecCCCCEEEEEEEeC-------------CcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEE
Confidence 5779999999999981 02344555555432 1111 11111111 0 1113455555443 5679
Q ss_pred EEeccCCCCCCeeEEEEEEcCCC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.+++.+|+|.|.|.+.+..+
T Consensus 69 L~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 69 LTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEECCCCHHHCEEEEEEEecCCC
Confidence 99999999999999999987554
No 235
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.02 E-value=2.3e-05 Score=58.32 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=46.8
Q ss_pred EEEEEEEe-eecCCceEEEECCeecCCCCceEEEEc---CCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 373 FTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETS---ENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 373 ~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~---~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
++|.|... ++|.+.|.|++++..+...... .... ...+.|.|.-... +|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ-QENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCccc-ccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhCC
Confidence 67999985 6788899999999988542210 0000 0124688888888 99999999999998764
No 236
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.99 E-value=1.5e-05 Score=61.77 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=49.1
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..|..|+.++|+|... .+...+.|++++...... .....+....|.|.++
T Consensus 11 ~vV~~G~~VtL~C~~~---------------------------~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v 60 (91)
T cd05751 11 SVVPLGKPVTLRCQGP---------------------------YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSM 60 (91)
T ss_pred CccCCCCcEEEEEecC---------------------------CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCC
Confidence 4678999999999775 456678898887653321 1122445678999999
Q ss_pred CCCCCeeEEEEEEcC
Q psy7039 204 SRSDTGHYSLTLENN 218 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~ 218 (516)
+.+|+|.|+|.+.+.
T Consensus 61 ~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 61 KREHAGRYRCYYRSG 75 (91)
T ss_pred ChhHCEEEEEEEECC
Confidence 999999999999875
No 237
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.98 E-value=3.1e-05 Score=60.22 Aligned_cols=83 Identities=23% Similarity=0.237 Sum_probs=57.5
Q ss_pred ccEEEEcCCeEEEEEEEe-----------eecCCceEEEECCeecCCCCceE---EEEcCCeEEEEEcCceecCCceEEE
Q psy7039 363 RDMTVLAGEEFTITVPFS-----------GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~-----------g~p~~~i~W~~~~~~l~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+.+.+|+.+.|.|..- ......+.|+|++..+....... .........|.|..+.. +|+|.|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~-eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAEL-QDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCCh-hhCeEEE
Confidence 557889999999999961 11123799999975543322100 11222334699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.+.|...-...++.|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999999877666666554
No 238
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.95 E-value=3.9e-05 Score=61.91 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=50.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe--ee-------------c-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ--VC-------------Q- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~--~~-------------~- 182 (516)
..+..+.+.+|++++|.|... + +...+.|++... .. .
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~--------------------------~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~ 55 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQT--------------------------S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEE 55 (110)
T ss_pred ECCCceEEcCCCcEEEEEEEC--------------------------C-CCCEEEEEEECCCCCcEEEEEEcCCCceEec
Confidence 345668899999999999998 4 344555655211 00 0
Q ss_pred --cCCceEEeec-CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 183 --IGGRADVQTT-KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 183 --~~~~~~~~~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
...|+..... .....|.|.+++.+|+|.|.|.+.+.
T Consensus 56 ~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 56 GDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CccCCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 1245544433 25679999999999999999998764
No 239
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.94 E-value=5.8e-05 Score=60.75 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=56.4
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCee------c--------CCCCceEEEEc--CCeEEEEEcCceecCCce
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE------V--------SPDGRIKFETS--ENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~------l--------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g 425 (516)
+..+.+..|++++|.|.+.+.+...+.|++.... + ....++.+... .....|.|.+++. .|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCE
Confidence 4567899999999999998877779999985321 0 12345655433 3567899999999 9999
Q ss_pred EEEEEEEcCCC
Q psy7039 426 SYTIQLVNTVG 436 (516)
Q Consensus 426 ~y~c~a~n~~G 436 (516)
.|.|.+.+..+
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997653
No 240
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.94 E-value=2.6e-05 Score=60.39 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=49.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
...+..|++++|.|... .+...+.|+++|....... .........|.|.++.. .|+|.|+|...+.
T Consensus 10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~ 75 (91)
T cd05751 10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKR-EHAGRYRCYYRSG 75 (91)
T ss_pred CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCCh-hHCEEEEEEEECC
Confidence 45678999999999885 5566789999986532210 11233456799999999 9999999999986
No 241
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.94 E-value=7.4e-05 Score=60.01 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=57.3
Q ss_pred cCCeEEEEEEEeeec------------CCceEEEECCe--e---c-----------CCCCceEEEE---cCCeEEEEEcC
Q psy7039 369 AGEEFTITVPFSGRP------------KPTPIWTVNGD--E---V-----------SPDGRIKFET---SENQTIYRNKS 417 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------------~~~i~W~~~~~--~---l-----------~~~~~~~~~~---~~~~~~l~i~~ 417 (516)
.|++++|.|...... .+.|.|++... . + ....|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999986543 35899998421 0 0 0112444433 33567899999
Q ss_pred ceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+.. .|+|.|+|.+.+.....+....|.|..
T Consensus 81 l~~-sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRS-NDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccc-ccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999 999999999998888888888887764
No 242
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.92 E-value=3.9e-05 Score=61.40 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|++++|.|.+.+ ......+.|++.. .....+.+..+........|+.........
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~-------------~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~ 71 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQ-------------SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDF 71 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECC-------------CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEE
Confidence 3455678999999999999871 0012334454432 111111111111111112456655455667
Q ss_pred EEEeccCCCCCCeeEEEEEEc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.|.|.+++.+|+|.|.|.+.+
T Consensus 72 ~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 72 TLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred EEEECCCChHHCEEEEEEEeC
Confidence 899999999999999999864
No 243
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.90 E-value=0.00011 Score=58.73 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=56.2
Q ss_pred cCCeEEEEEEEeeec------CCceEEEECC-----e-ec--CCCC------ce--EEE---EcCCeEEEEEcCceecCC
Q psy7039 369 AGEEFTITVPFSGRP------KPTPIWTVNG-----D-EV--SPDG------RI--KFE---TSENQTIYRNKSAKRATD 423 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------~~~i~W~~~~-----~-~l--~~~~------~~--~~~---~~~~~~~l~i~~~~~~~~ 423 (516)
.|++++|.|.+...+ ...|.|++.. . .+ ..+. .+ .+. ...+..+|+|.++.. .|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence 478999999997653 4589999862 1 00 0111 11 111 123557899999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|.|+|.+.+..+.....+.|.|.+
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999999888888888888864
No 244
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.90 E-value=0.00011 Score=59.46 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=53.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc-C----CceEEee-
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI-G----GRADVQT- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~-~----~~~~~~~- 191 (516)
+..+.+..|+.+.|.|.++ .....-..+.+.|..+... ...+.-+.++..... . +|..+..
T Consensus 5 ~~ev~a~~G~~v~L~C~f~----------~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~ 74 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFW----------SSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGN 74 (116)
T ss_pred cceEEEEcCCcEEEEEEEe----------cCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCC
Confidence 4457889999999999998 0001122345555222111 112222334444321 1 2444332
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.....+|.|.+++.+|.|.|+|.+.|..+
T Consensus 75 ~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 75 PSRKDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CCcCeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 23567999999999999999999998654
No 245
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.89 E-value=0.00013 Score=58.31 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=28.7
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
.....+|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~ 99 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVE 99 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEE
Confidence 346789999999999999999999986655444443
No 246
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.88 E-value=8.4e-05 Score=60.33 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec---CcCceeeEEeeCCeeeccCC----ceEEe--
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL---SEPFLNHGWSINGQVCQIGG----RADVQ-- 190 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~i~W~~~~~~~~~~~----~~~~~-- 190 (516)
.+..+.+.+|+.+.|.|.+.. ......+..+.|... +.....+..+.++....... |..+.
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~----------~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~ 73 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSS----------SAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGN 73 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEe----------CCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecC
Confidence 456688999999999999870 000111233555321 11111111111111111122 22221
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
......+|.|.+++.+|+|.|.|.+.|..+
T Consensus 74 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 74 IMRRDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CcCCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 123467899999999999999999987544
No 247
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.87 E-value=9.7e-05 Score=59.33 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred ceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 186 RADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 186 ~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
|+.+.. .....+|.|.+++.+|+|.|.|.+.+........
T Consensus 61 R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~ 103 (112)
T cd05900 61 RVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIEDNYDT 103 (112)
T ss_pred eEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCCceeE
Confidence 555543 4467899999999999999999998654444433
No 248
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.84 E-value=7.3e-05 Score=60.94 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeec----cCCceEEee
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQ----IGGRADVQT 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~----~~~~~~~~~ 191 (516)
..+..+.+.+|+.++|.|...+ .-.....+.|++... |..-+.+...+.... ...|+.+..
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~------------~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 70 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSG------------IDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK 70 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeC------------CCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE
Confidence 3456688899999999999871 001122344444311 111111221111110 135666655
Q ss_pred cC--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TK--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.. ....|.|.+++.+|+|.|.|.+..
T Consensus 71 ~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 71 DVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 54 567999999999999999999864
No 249
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.83 E-value=0.00015 Score=58.07 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=56.4
Q ss_pred cCCeEEEEEEEeeec------CCceEEEECCee-------c-C----------CCCceEEEE-cCCeEEEEEcCceecCC
Q psy7039 369 AGEEFTITVPFSGRP------KPTPIWTVNGDE-------V-S----------PDGRIKFET-SENQTIYRNKSAKRATD 423 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p------~~~i~W~~~~~~-------l-~----------~~~~~~~~~-~~~~~~l~i~~~~~~~~ 423 (516)
.|++++|.|.+...| ...|.|++.... + . ...++.+.. ..+..+|.|.++.. .|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence 478999999987653 347999985310 0 0 012333321 13356899999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|.|.|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999988888888888764
No 250
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.83 E-value=0.0001 Score=59.48 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=53.8
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec----------------CCCCceEEEEcC-CeEEEEEcCceecC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV----------------SPDGRIKFETSE-NQTIYRNKSAKRAT 422 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l----------------~~~~~~~~~~~~-~~~~l~i~~~~~~~ 422 (516)
+....+.+|++++|.|.+.+ +...+.|++... .. ....++...... ....|.|.++.. +
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~ 82 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-E 82 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-h
Confidence 45678999999999999987 667899998532 10 012455544332 457899999999 9
Q ss_pred CceEEEEEEEcCC
Q psy7039 423 DSGSYTIQLVNTV 435 (516)
Q Consensus 423 ~~g~y~c~a~n~~ 435 (516)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998754
No 251
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.82 E-value=0.00025 Score=52.67 Aligned_cols=76 Identities=42% Similarity=0.746 Sum_probs=53.9
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.++.+....+.++.|+|.+|...+. .+|.+.+..... .|...... .....+.|.+|.++..|.|+++|.
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEE
Confidence 4556678877778899999998642221 667777765332 25443333 226789999999999999999998
Q ss_pred cCCC
Q psy7039 91 NAAG 94 (516)
Q Consensus 91 n~~g 94 (516)
+..|
T Consensus 78 ~~~g 81 (83)
T smart00060 78 NGAG 81 (83)
T ss_pred cccC
Confidence 8644
No 252
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.82 E-value=0.00013 Score=55.26 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred CcCceeeEEeeCCeeeccCCceE-EeecC----CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRAD-VQTTK----SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.++|++++..+....... +...+ ..+.|.|.....+|.|.|+|.+.|...
T Consensus 11 ~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 11 AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 36888999999998875432111 11122 134788888888889999999988543
No 253
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.81 E-value=0.0002 Score=57.21 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC----cCceeeEEeeCCeee-cc--CCceEEee---cCCeeEE
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS----EPFLNHGWSINGQVC-QI--GGRADVQT---TKSETVL 198 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~i~W~~~~~~~-~~--~~~~~~~~---~~~~~~l 198 (516)
|..+.|.|.+. .+|. ......++.+.|.+.. .....+.|+.++... .. ..|..+.. .....+|
T Consensus 2 ~~~v~LpC~~~------~~p~-~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL 74 (110)
T cd05902 2 SSSVLLPCVFT------LPPS-ASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASL 74 (110)
T ss_pred CCcEEEeeEEE------cCcc-ccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEE
Confidence 67899999987 1111 1123467888887752 123345566665432 22 24554432 2357899
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.|.+++.+|+|.|.|.+.......+..+
T Consensus 75 ~i~nv~~~D~G~Y~C~v~~g~~~~~~~v 102 (110)
T cd05902 75 VLSRLRYSDSGTYRCEVVLGINDEQDTV 102 (110)
T ss_pred EECCCCHHHCEEEEEEEEECCcccEEEE
Confidence 9999999999999999987554444333
No 254
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.81 E-value=9.5e-05 Score=59.01 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=52.4
Q ss_pred EEEcCCeEEEEEEEeee-cCCceEEEECCee-----c------------CCCCceEEEEcC--CeEEEEEcCceecCCce
Q psy7039 366 TVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-----V------------SPDGRIKFETSE--NQTIYRNKSAKRATDSG 425 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-----l------------~~~~~~~~~~~~--~~~~l~i~~~~~~~~~g 425 (516)
.+..|+.++|.|.+.+. +...+.|++.... + ....++.+.... ...+|+|.++.. .|.|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence 46789999999999876 6668999985321 0 112345444433 567899999999 9999
Q ss_pred EEEEEEEcCCC
Q psy7039 426 SYTIQLVNTVG 436 (516)
Q Consensus 426 ~y~c~a~n~~G 436 (516)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 255
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.81 E-value=0.00035 Score=56.19 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeec-c--CCceEEe---ecCCeeEEEec
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQ-I--GGRADVQ---TTKSETVLDIP 201 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~-~--~~~~~~~---~~~~~~~l~i~ 201 (516)
|+.+.|.|.+.. ...+..+-.-+..+.+.|.+.. .....+.++.++.... . .+|+.+. ......+|.|.
T Consensus 2 G~~V~LpC~~~~----~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~ 77 (110)
T cd05878 2 SSSVLLPCYFTL----PPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEIS 77 (110)
T ss_pred CCCEEEeeEeeC----CccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEEC
Confidence 789999999871 0000000012345677787652 2234445555444321 1 1344442 23456789999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+++.+|+|.|.|.+.......+..+.
T Consensus 78 ~l~~sD~G~Y~C~v~~~~~~~~~~v~ 103 (110)
T cd05878 78 RLRSSDSGVYRCEVMHGIEDEQDTVP 103 (110)
T ss_pred CCChhhCEEEEEEEEeCCCcceEEEE
Confidence 99999999999999875544444443
No 256
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.80 E-value=0.0002 Score=56.27 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=26.6
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLEN-NLGTATASAH 227 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~~ 227 (516)
...+|.|.+++.+|+|.|.|.+.. ..|.......
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~ 94 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTT 94 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence 467999999999999999999875 4555554443
No 257
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.78 E-value=8.4e-05 Score=57.90 Aligned_cols=68 Identities=7% Similarity=0.024 Sum_probs=47.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
...|.+|+.++|+|... . +...+.|++++...................+.|.+
T Consensus 9 ~~vV~~G~~VTL~C~~~--------------------------~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~ 61 (94)
T cd05711 9 SPVVPSGENVTLQCHSD--------------------------I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGP 61 (94)
T ss_pred CCccCCCCeEEEEEecC--------------------------C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecC
Confidence 45678999999999876 3 44578888877653211000011133456899999
Q ss_pred CCCCCCeeEEEEEEc
Q psy7039 203 CSRSDTGHYSLTLEN 217 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~ 217 (516)
++.+|+|.|+|....
T Consensus 62 ~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 62 VTPAHAGTYRCYGSY 76 (94)
T ss_pred CCcccCEEEEEEEEC
Confidence 999999999999763
No 258
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.78 E-value=0.00018 Score=57.58 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....+|.|.+++.+|+|.|.|.+.+..+.....+.+
T Consensus 65 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l 100 (106)
T cd05877 65 DLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVAL 100 (106)
T ss_pred CCcEEEEEccCChHHCEEEEEEEEecccceEEEEEE
Confidence 346789999999999999999998877766555433
No 259
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.78 E-value=0.0002 Score=56.62 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.0
Q ss_pred CCeEEEEEEEeeecC---CceEEEECCe-----------ecC------CCCceEEEE---cCCeEEEEEcCceecCCceE
Q psy7039 370 GEEFTITVPFSGRPK---PTPIWTVNGD-----------EVS------PDGRIKFET---SENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 370 g~~~~l~C~~~g~p~---~~i~W~~~~~-----------~l~------~~~~~~~~~---~~~~~~l~i~~~~~~~~~g~ 426 (516)
|+++.|.|....... ..+.|++... ... ...++.+.. ..+..+|.|.++.. .|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence 567888888753221 2577776431 111 012333321 23456899999999 99999
Q ss_pred EEEEEEcCCCceeEEEEEEE
Q psy7039 427 YTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 427 y~c~a~n~~G~~s~s~~l~v 446 (516)
|+|.+.|..+.....+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999998877777777665
No 260
>KOG0613|consensus
Probab=97.77 E-value=0.0005 Score=74.88 Aligned_cols=342 Identities=18% Similarity=0.107 Sum_probs=185.5
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
.+|.+-....+...-+...|..|..+++..+..|+|+.+..++ .|............+.+.. ....+.++|.+.+..
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~--~e~~v~~v~s~gqp~ 218 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH--YESRVRAVVSAGQPE 218 (1205)
T ss_pred CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc--cceeEEEEEecCCCc
Confidence 3445544456778889999999988999999999999998777 6655433323333333332 444555555553332
Q ss_pred CCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeE
Q psy7039 94 GPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173 (516)
Q Consensus 94 g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~ 173 (516)
+...+.... . .+.+. ..+..-.+..++...|.|.+. ...-+.+.
T Consensus 219 ~~~~~~~~g------~---~i~~~-~~~~~s~t~e~s~~~i~~~l~--------------------------~~~G~~~~ 262 (1205)
T KOG0613|consen 219 PLERWEILG------E---LIAPG-SAPSMSVTLEASDRKIQLTLR--------------------------APRGPYSA 262 (1205)
T ss_pred cchhhhhcc------c---ccCCC-CccccccccchhheeeeEEee--------------------------cCCCchHH
Confidence 222211100 0 11111 344445566788888999888 77777777
Q ss_pred EeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee--------------eecccc
Q psy7039 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF--------------TDNNVH 239 (516)
Q Consensus 174 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------------~~~~l~ 239 (516)
|..+....... .-+..+..|.+-...+.+.|+|...+..+............+ ....+.
T Consensus 263 ~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~ 335 (1205)
T KOG0613|consen 263 HILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVP 335 (1205)
T ss_pred HHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCcccc
Confidence 77765443322 223446777777888888888888777666544432111111 111223
Q ss_pred CCceEEEEEEEEc---------cCCCCCce-eccccc-------ccceEEEEEecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 240 EGKAYEYRVSAVN---------AAGTEKPK-ISLDAL-------IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 240 ~g~~~~~~~~~~~---------~~g~p~p~-i~W~~~-------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
.|..+...+.+.+ ..|...|. +.|... .+.............+.|..+.+++.+.|.|.|.|.
T Consensus 336 v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~ 415 (1205)
T KOG0613|consen 336 VGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNK 415 (1205)
T ss_pred ccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceecc
Confidence 3344444444321 13444443 444331 011112222445567888999999999999999999
Q ss_pred CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC--CeEEEEEEEe
Q psy7039 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG--EEFTITVPFS 380 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g--~~~~l~C~~~ 380 (516)
.|.........+...+.....+ .|..+ .......+ +.+.+.|...
T Consensus 416 ~g~~~~~~~~~vs~~~~gt~~~-------------~~kk~--------------------~~~t~~L~~~~~i~~~~~~~ 462 (1205)
T KOG0613|consen 416 GGTEQTIAESTVSEEMPGTQPP-------------KFKKD--------------------VSTTDLLTVKDEITVRTPDS 462 (1205)
T ss_pred CCcccccchhhcccccCCCCCc-------------ccccc--------------------ccccccccCCcccccccCCC
Confidence 8876544333333322211110 01100 11111222 5566777777
Q ss_pred eecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 381 GRPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 381 g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.+.+ .++|.+++... ...+.........+|.+.-... .+.+.|........|.
T Consensus 463 s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~-~~~A~~~~a~~~~~~k 518 (1205)
T KOG0613|consen 463 STSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASL-SDGAQYTRALRTLQGK 518 (1205)
T ss_pred CccccceeEeeccCCccc--ccccccccccchhhheeeccCC-CccchhhhhhhccCCC
Confidence 76655 34444444322 2223333333445666766677 7888886655544444
No 261
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.76 E-value=9.8e-05 Score=58.12 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=48.9
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+|++++|.|.... .......+.|++... |..-+.+..+ .......|+.....+....|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~------------~~~~~~~i~Wy~q~~g~~~~~l~~~~~~-~~~~~~~rf~~~~~~~~~~L~I~ 68 (98)
T cd04984 2 SVSPGETVTITCTGSS------------GNISGNYVNWYQQKPGSAPRYLIYEDSD-RPSGIPDRFSGSKSGNTASLTIS 68 (98)
T ss_pred ccCCCCCEEEEEEEcC------------CCcCCCCEEEEEECCCCCccEEEEeccc-cCCCCCCCEEEEccCCEEEEEEC
Confidence 4678999999999871 001223355544321 1111222111 11111346776666677899999
Q ss_pred cCCCCCCeeEEEEEEc
Q psy7039 202 FCSRSDTGHYSLTLEN 217 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~ 217 (516)
+++.+|+|.|.|.+.+
T Consensus 69 ~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 69 GAQTEDEADYYCQVWD 84 (98)
T ss_pred CCChhhCEEEEEEEcc
Confidence 9999999999999764
No 262
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.76 E-value=0.00014 Score=58.22 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=53.3
Q ss_pred cccEEEEcCCeEEEEEEEeeec-CCceEEEECCe--e---c---------CCCCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGD--E---V---------SPDGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~--~---l---------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
+....+.+|++++|.|.+.+.. ...+.|++... . + ....++..........|.|.++.. .|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~ 85 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV 85 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence 4567889999999999997665 56799987431 1 0 012356655455567899999999 99999
Q ss_pred EEEEEEcC
Q psy7039 427 YTIQLVNT 434 (516)
Q Consensus 427 y~c~a~n~ 434 (516)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998764
No 263
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.75 E-value=0.00016 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=23.0
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+++|.|.+++.+|+|.|.|.+.+...
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~ 94 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNF 94 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCc
Confidence 45999999999999999999988663
No 264
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.72 E-value=0.00017 Score=56.00 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.8
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.+|.|.+++.+|+|.|.|.+....+..
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~ 83 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVT 83 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcE
Confidence 799999999999999999998766443
No 265
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.71 E-value=0.00017 Score=56.61 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
......+|.|.+++.+|+|.|.|.+....|..
T Consensus 56 ~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~ 87 (97)
T cd05775 56 FSQNDYSLQISNLKMEDAGSYRAEINTKNGVT 87 (97)
T ss_pred ecCCceeEEECCCchHHCEEEEEEEEcCCCCe
Confidence 34556899999999999999999998766543
No 266
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.68 E-value=0.00094 Score=53.61 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=58.4
Q ss_pred CCeEEEEEeeeeccccccC-ccccccccccCccceeecC-------cCceeeEEeeCCeeecc---CCceEEee---cCC
Q psy7039 129 GQSFSFDVKEFRELSYTKS-PLRALGVRANSTKGWVKLS-------EPFLNHGWSINGQVCQI---GGRADVQT---TKS 194 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~p~~~i~W~~~~~~~~~---~~~~~~~~---~~~ 194 (516)
|.++.|.|.+. +.+. |..+..-..++.+.|.+.. .....+.++.++..... ..|..+.. ..+
T Consensus 2 ~g~v~LPC~f~----~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g 77 (117)
T cd05901 2 SGSVVLPCRFS----TLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQG 77 (117)
T ss_pred CCCEEEeeEEE----ecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCC
Confidence 57889999988 2111 1112344556777775541 12345556666543322 23444432 235
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
..+|.|.+++.+|+|.|+|.+..........+.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~ 110 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVS 110 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEE
Confidence 789999999999999999999876655554443
No 267
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.67 E-value=0.00027 Score=57.56 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=50.5
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---CceeeEEeeCCeeec-cC----CceEEee
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFLNHGWSINGQVCQ-IG----GRADVQT 191 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~i~W~~~~~~~~-~~----~~~~~~~ 191 (516)
.+..+.+.+|+.++|.|.+.. .........+.|..... +...+..+.++.... .. .|+.+..
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~----------~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~ 73 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSS----------SEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVG 73 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeC----------CCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEec
Confidence 456688999999999999870 00001123355543211 111122222222111 12 2222221
Q ss_pred --cCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 192 --TKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 192 --~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.....+|.|.+++.+|+|.|.|.+.+...
T Consensus 74 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 74 NPSRKDASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CCcCCeeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 23457899999999999999999987543
No 268
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.66 E-value=0.00037 Score=54.75 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=50.4
Q ss_pred CeEEEEEEEeeec---CCceEEEECCee---------------cCC--CCceEEEEcC-CeEEEEEcCceecCCceEEEE
Q psy7039 371 EEFTITVPFSGRP---KPTPIWTVNGDE---------------VSP--DGRIKFETSE-NQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 371 ~~~~l~C~~~g~p---~~~i~W~~~~~~---------------l~~--~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c 429 (516)
+++.|.|...... ...|.|++.... +.. ..+..+.... ...+|.|.++.. .|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence 4678999987654 337999986431 001 1122222111 456899999999 99999999
Q ss_pred EEEc-CCCceeEEEEEEE
Q psy7039 430 QLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n-~~G~~s~s~~l~v 446 (516)
.+.+ ..|.......|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9875 6787777777766
No 269
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.66 E-value=0.00032 Score=57.35 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=51.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc--eeeEEeeC-Ceee--ccCCceEEe--e
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF--LNHGWSIN-GQVC--QIGGRADVQ--T 191 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~-~~~~--~~~~~~~~~--~ 191 (516)
..+..+.+.+|+.++|.|.+. .|.. ........+-|++...-. ..+..... .... .-..|+.+. .
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~-------~~~~-~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~ 75 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFS-------YPAD-WPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDL 75 (119)
T ss_pred cCCCEEEEeccccEEEEEEee-------Cccc-ccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCC
Confidence 456678899999999999876 0100 001112234444431100 01111111 1111 012456553 3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.....+|.|.+++.+|+|.|.|.+...
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 455679999999999999999998653
No 270
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.62 E-value=0.0003 Score=57.28 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=53.8
Q ss_pred cccEEEEcCCeEEEEEEEee--ecCCceEEEECC--eec-----------------CCCCceEEEEcC--CeEEEEEcCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSG--RPKPTPIWTVNG--DEV-----------------SPDGRIKFETSE--NQTIYRNKSA 418 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g--~p~~~i~W~~~~--~~l-----------------~~~~~~~~~~~~--~~~~l~i~~~ 418 (516)
+..+.+..|+.++|.|.+.+ .+.+.+.|++.. ... ....++.+.... ....|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 45677889999999999977 667789999842 110 013466665544 5678999999
Q ss_pred eecCCceEEEEEEEc
Q psy7039 419 KRATDSGSYTIQLVN 433 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n 433 (516)
.. .|+|.|.|.+..
T Consensus 85 ~~-~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EK-EDSATYYCAYWE 98 (116)
T ss_pred CH-HHCEEEEEEEec
Confidence 99 999999999864
No 271
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.61 E-value=0.0005 Score=55.29 Aligned_cols=79 Identities=16% Similarity=0.335 Sum_probs=56.1
Q ss_pred cCCeEEEEEEEeeec----------CCceEEEECC--ee---c---------C--CCCceEEE---EcCCeEEEEEcCce
Q psy7039 369 AGEEFTITVPFSGRP----------KPTPIWTVNG--DE---V---------S--PDGRIKFE---TSENQTIYRNKSAK 419 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p----------~~~i~W~~~~--~~---l---------~--~~~~~~~~---~~~~~~~l~i~~~~ 419 (516)
.|++++|.|.....+ ...|.|++.. .. + . -..|+.+. ...+..+|+|.++.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378899999986543 2479999852 11 0 0 11233332 22355789999999
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
. .|.|.|.|.+..........+.|.|.+
T Consensus 81 ~-sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 S-SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred h-hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9 999999999998877788888888764
No 272
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.61 E-value=0.0005 Score=55.81 Aligned_cols=75 Identities=24% Similarity=0.440 Sum_probs=50.8
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEEC----Cee--c---C------CCCce----EEE--EcCCeEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN----GDE--V---S------PDGRI----KFE--TSENQTIYRNK 416 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~----~~~--l---~------~~~~~----~~~--~~~~~~~l~i~ 416 (516)
+..+.+..|++++|.|.....+ ...|.|++. +.. + . ...+| .+. ...+..+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4668899999999999986443 236999752 110 1 0 11122 111 12345679999
Q ss_pred CceecCCceEEEEEEEcCCCc
Q psy7039 417 SAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+++. .|+|.|.|.+.|..+.
T Consensus 85 ~v~~-~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQP-TDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCCh-hhCEEEEEEEEeCCCC
Confidence 9999 9999999999987764
No 273
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.60 E-value=0.00013 Score=53.87 Aligned_cols=62 Identities=23% Similarity=0.363 Sum_probs=42.4
Q ss_pred EcCCeEEEEEEEeeec-CCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 368 LAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p-~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
..+..+.|.|.+.+.+ .+.+.|+ +.... ..............|.|.++.. +|.|.|+|.|.|
T Consensus 13 ~~~~~~~l~C~~~~~~~~~~~~W~-~~~~~--~~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N 75 (75)
T PF13927_consen 13 TSGGSVTLTCSAEGGPPPPSISWY-DSNPS--FNSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN 75 (75)
T ss_dssp ETTEEEEEEEEESSEESSEEEEEE-TEEEE--EEEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred eeceeEEEEEEEccccCCeEEEEE-ecCCc--eeeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence 3333499999999888 7799999 11100 0011112223446799999999 999999999987
No 274
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.58 E-value=0.00032 Score=55.19 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=50.7
Q ss_pred EEEcCCeEEEEEEEeee--cCCceEEEECCe--ec------------CCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 366 TVLAGEEFTITVPFSGR--PKPTPIWTVNGD--EV------------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~--p~~~i~W~~~~~--~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
.+..|++++|.|.+.+. ....+.|++... .. ....++..........|+|.++++ .|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence 46789999999998765 455799987432 11 112466666666677899999999 99999999
Q ss_pred EEEcC
Q psy7039 430 QLVNT 434 (516)
Q Consensus 430 ~a~n~ 434 (516)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98754
No 275
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.57 E-value=0.00063 Score=55.07 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=51.8
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEEC---------------CeecC-C----CCceEEE--EcCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN---------------GDEVS-P----DGRIKFE--TSENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~---------------~~~l~-~----~~~~~~~--~~~~~~~l~i 415 (516)
...+.+..|+.+.|.|...... ...|.|.+. +.... . ..|..+. ...+..++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3557889999999999996542 348999442 22221 1 1233322 1235578999
Q ss_pred cCceecCCceEEEEEEEcCCCc
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.++.. .|.|.|+|.+.|.-+.
T Consensus 85 ~nv~~-sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDY-TDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCc-ccCEEEEEEEEcCCCc
Confidence 99999 9999999999998664
No 276
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.53 E-value=0.00027 Score=55.04 Aligned_cols=70 Identities=13% Similarity=-0.014 Sum_probs=47.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.....+..|++++|.|.... ....+.|++++...................|.|..+.. .|+|.|+|....
T Consensus 7 ~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~~ 76 (94)
T cd05711 7 HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGSY 76 (94)
T ss_pred cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEEC
Confidence 34457889999999997754 44579999988643210000000122345789999999 999999999753
No 277
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.50 E-value=0.00044 Score=53.58 Aligned_cols=64 Identities=27% Similarity=0.355 Sum_probs=46.2
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecC------------------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVS------------------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~------------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
|++++|.|.........|.|++...... ...++.+. .+ .+|.|.++.. .|+|.|+|.+
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~~-~sL~I~~l~~-~DsG~Y~c~v 76 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--PN-GSLLIQNLTK-EDSGTYTLQI 76 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--CC-ceEEEccCCc-hhcEEEEEEE
Confidence 6789999988775556899998653211 01222222 22 6899999999 9999999999
Q ss_pred EcCCCc
Q psy7039 432 VNTVGS 437 (516)
Q Consensus 432 ~n~~G~ 437 (516)
....|.
T Consensus 77 ~~~~~~ 82 (92)
T cd05741 77 ISTNGV 82 (92)
T ss_pred EcCCCc
Confidence 988754
No 278
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.49 E-value=0.00036 Score=59.90 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee----------cc--CCceE-
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC----------QI--GGRAD- 188 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~----------~~--~~~~~- 188 (516)
..+.|.+|+++.|.|.... +....++.|++....+ .. .+|+.
T Consensus 23 ~~v~V~ege~VtLsCs~t~-------------------------s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~ 77 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTS-------------------------SFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY 77 (189)
T ss_pred EEEEEcCCCCEEEEEecCC-------------------------CCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE
Confidence 4578899999999999840 4456778888853222 11 13444
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+......+.|.|.+++++|+|.|+|....
T Consensus 78 mS~s~~~StItIknVt~sDeGcY~C~F~t 106 (189)
T PHA02987 78 LSKSFNESTILIKNVSLKDNGCYTCIFNT 106 (189)
T ss_pred eccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence 33445568999999999999999998753
No 279
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.46 E-value=0.00054 Score=55.78 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCee-eccCCceEEee--cCCe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQV-CQIGGRADVQT--TKSE 195 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~-~~~~~~~~~~~--~~~~ 195 (516)
.+..+.+.+|+++.|.|.... ......+.|++.... .+.+.-+..... ....+|+.+.. ....
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~-------------~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~ 71 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYET-------------SWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKS 71 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeC-------------CCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCE
Confidence 445688999999999999871 002233445443110 111110111100 01135666542 3456
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+|.|.+++.+|+|.|.|.+..
T Consensus 72 ~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 72 ISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred EEEEECCCCHHHCEEEEEEEEC
Confidence 7999999999999999999874
No 280
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.45 E-value=0.001 Score=49.73 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=50.9
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 202 (516)
.+..|++++|.|... . .|.+.|.|..++...-. .......+|.+..
T Consensus 10 ~lL~G~sLtLtl~~~--------------------------s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~q 57 (88)
T cd07694 10 HVLSGTNLTLTLHGS--------------------------SNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQ 57 (88)
T ss_pred eeecCCcEEEEEecC--------------------------CCCCCCccEEEeCCCCccce------eccCCccEEEece
Confidence 567899999999986 4 34559999986654321 1123456899999
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
++..|+|.++|.+....-..+....+
T Consensus 58 v~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 58 LGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eCcccCCEEEEEEEECceEEEEEeeE
Confidence 99999999999997544333333333
No 281
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.45 E-value=0.00054 Score=53.68 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=52.8
Q ss_pred EcCCeEEEEEEEee-ecCCceEEEECCeecC-------------CCCce--EEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 368 LAGEEFTITVPFSG-RPKPTPIWTVNGDEVS-------------PDGRI--KFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 368 ~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~-------------~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
..|++++|.|.... .....+.|++....+. ...+| .+.......+|+|.++.. .|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence 36899999998754 4445789997642210 01122 223334557899999999 9999999999
Q ss_pred EcCCCce-eEEEEEEE
Q psy7039 432 VNTVGSD-SASCKVYV 446 (516)
Q Consensus 432 ~n~~G~~-s~s~~l~v 446 (516)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9888763 44555554
No 282
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.41 E-value=0.00077 Score=53.43 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=51.2
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecC-------------------CCCceEEEEcCCeEEEEEcCceecCCce
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-------------------PDGRIKFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~-------------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
..+.+|+++.|.|.........+.|++...... ..++..+. ...+|.|.++.. .|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~-~D~G 83 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQ-KDTG 83 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCc-ccCE
Confidence 357899999999876544444899999632110 01222222 124799999999 9999
Q ss_pred EEEEEEEcCCC-ceeEEEEEE
Q psy7039 426 SYTIQLVNTVG-SDSASCKVY 445 (516)
Q Consensus 426 ~y~c~a~n~~G-~~s~s~~l~ 445 (516)
.|.|.+.+... .......|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 99999999874 344444443
No 283
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.40 E-value=0.00055 Score=53.83 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=46.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-e-eeEEeeCCeeeccCCceEEee--cCCeeEEE
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-L-NHGWSINGQVCQIGGRADVQT--TKSETVLD 199 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~-~i~W~~~~~~~~~~~~~~~~~--~~~~~~l~ 199 (516)
+.+.+|++++|.|.... ......+-|++..... + .+. ......-....|+.+.. ......|.
T Consensus 2 v~~~~G~~vtl~C~~~~-------------~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~ 67 (98)
T cd05716 2 VTGELGGSVTIPCPYPP-------------KNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVT 67 (98)
T ss_pred EEEEeCCeEEEEeeCCC-------------CCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEE
Confidence 56789999999998871 0122334444432110 0 110 00000001134555532 34567999
Q ss_pred eccCCCCCCeeEEEEEEcC
Q psy7039 200 IPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 200 i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+++.+|+|.|.|.+...
T Consensus 68 I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 68 LNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred EcCCCHHHCEEEEEEcccC
Confidence 9999999999999998754
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.35 E-value=0.0012 Score=52.02 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.6
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc-CCCce
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN-NLGTA 222 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~ 222 (516)
....+|.|.+++.+|+|.|.|.+.+ ..|..
T Consensus 61 ~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~ 91 (100)
T cd05888 61 IADGALILRNAVQADEGKYKCRVITFPAGNF 91 (100)
T ss_pred CCceEEEEecCccccceEEEEEEEeCCCCCe
Confidence 3467899999999999999999986 34443
No 285
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.35 E-value=0.00095 Score=49.92 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=37.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.|+|++++.++.......-.. ....++|.|..-..+|...|+|.+.|..
T Consensus 11 SkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 11 SKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred CCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 78999999999999886542211111 1134577886666666667999998854
No 286
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.34 E-value=0.0018 Score=50.73 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=26.6
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLEN-NLGTATASA 226 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~ 226 (516)
...+|.|.+++.+|+|.|+|.+.+ ..|..+..+
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~ 94 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQL 94 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEE
Confidence 457999999999999999999998 455544433
No 287
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.33 E-value=0.0014 Score=53.30 Aligned_cols=75 Identities=20% Similarity=0.386 Sum_probs=50.4
Q ss_pred cccEEEEcCCeEEEEEEEeeec----CCceEEEECCe------e-c--C-------CCCc----eEEE--EcCCeEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP----KPTPIWTVNGD------E-V--S-------PDGR----IKFE--TSENQTIYRN 415 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~~~------~-l--~-------~~~~----~~~~--~~~~~~~l~i 415 (516)
+..+.+..|+.++|.|...... ...+.|++... . + . ...+ +.+. ...+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4667889999999999986432 24699976321 0 0 0 1112 2221 1223468999
Q ss_pred cCceecCCceEEEEEEEcCCCc
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+++. .|.|.|.|.+.|..+.
T Consensus 85 ~~v~~-~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQF-TDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCc-ccCEEEEEEEEeCCCC
Confidence 99999 9999999999987654
No 288
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.28 E-value=0.0015 Score=51.53 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=48.8
Q ss_pred eEEEEEEEeeec---CCceEEEECCee--------cC--------C--CCceEEEE--cCCeEEEEEcCceecCCceEEE
Q psy7039 372 EFTITVPFSGRP---KPTPIWTVNGDE--------VS--------P--DGRIKFET--SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 372 ~~~l~C~~~g~p---~~~i~W~~~~~~--------l~--------~--~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
++.|.|...... ...|.|++.... +. . .++..+.. .....+|+|.++.. .|.|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence 577888875433 237888873210 00 0 12333332 23456899999999 9999999
Q ss_pred EEEEc-CCCceeEEEEEEE
Q psy7039 429 IQLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n-~~G~~s~s~~l~v 446 (516)
|.+.+ +.|..+....|+|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99998 6777777777766
No 289
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.27 E-value=0.0027 Score=51.10 Aligned_cols=84 Identities=25% Similarity=0.344 Sum_probs=56.6
Q ss_pred cccEEEEcCCeEEEEEEEe-eecCCceEEEECCe-----e-c-------------CCCCceEEEEc--CCeEEEEEcCce
Q psy7039 362 IRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD-----E-V-------------SPDGRIKFETS--ENQTIYRNKSAK 419 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~-----~-l-------------~~~~~~~~~~~--~~~~~l~i~~~~ 419 (516)
+..+.+..|+++.|.|... ......+.|++... . + ....++.+... ....+|.|.++.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4567899999999999998 44455899998432 0 1 01223333333 346789999999
Q ss_pred ecCCceEEEEEEEcCC-CceeEEEEEEE
Q psy7039 420 RATDSGSYTIQLVNTV-GSDSASCKVYV 446 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~-G~~s~s~~l~v 446 (516)
. .|+|.|.|.+.... ........|.|
T Consensus 88 ~-~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 88 P-SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp G-GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred c-CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9 99999999999872 22333444443
No 290
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.27 E-value=0.0013 Score=51.36 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred EcCCeEEEEEEEeee-cC-CceEEEECCeecCCCCc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 368 LAGEEFTITVPFSGR-PK-PTPIWTVNGDEVSPDGR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..|..+.|.|.+.|. |. ..|.|+++|..+..... .......+ .+.|.|..... .+.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 468899999999998 53 48999999988754432 11111111 13466666655 6999999999987654
No 291
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.24 E-value=0.0026 Score=50.88 Aligned_cols=78 Identities=17% Similarity=0.305 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeeec-------CCceEEEECC-----ee---c-----------CCCCceEEEE---cCCeEEEEEcCcee
Q psy7039 370 GEEFTITVPFSGRP-------KPTPIWTVNG-----DE---V-----------SPDGRIKFET---SENQTIYRNKSAKR 420 (516)
Q Consensus 370 g~~~~l~C~~~g~p-------~~~i~W~~~~-----~~---l-----------~~~~~~~~~~---~~~~~~l~i~~~~~ 420 (516)
|..++|.|.+.-.| .+.|.|.+.. .. + .-.+|..+.. ..+..+|.|.++..
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67889999975322 3589998751 10 0 0112334332 12457899999999
Q ss_pred cCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 421 ATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.|+|.|+|.+............|.|..
T Consensus 82 -~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 -SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred -HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999777788888888764
No 292
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.24 E-value=0.0034 Score=49.16 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=49.6
Q ss_pred eEEEEEEEeee-cCC---ceEEEECCe----ec---C----------CCCceEEE-EcCCeEEEEEcCceecCCceEEEE
Q psy7039 372 EFTITVPFSGR-PKP---TPIWTVNGD----EV---S----------PDGRIKFE-TSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 372 ~~~l~C~~~g~-p~~---~i~W~~~~~----~l---~----------~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
++.|.|..... +.. +|.|.+... .+ . ..++..+. ...+..+|.|.++.. .|.|.|.|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~-~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLEL-EDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCcc-ccCEEEEE
Confidence 57788988743 211 588987421 00 0 01222222 122447899999999 99999999
Q ss_pred EEEc-CCCceeEEEEEEE
Q psy7039 430 QLVN-TVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n-~~G~~s~s~~l~v 446 (516)
.+.| +.|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7888888888877
No 293
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.23 E-value=0.0012 Score=52.82 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=24.3
Q ss_pred CceEEe--ecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 185 GRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 185 ~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.++.+. .......|.|.+++.+|+|.|.|...
T Consensus 59 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~ 92 (107)
T cd07700 59 EKFSIRVTSDSSRYRLHINRVKPEDSGTYFCMTV 92 (107)
T ss_pred CcEEEEEECCCCEEEEEECCCCHHHCEEEEEeEc
Confidence 355442 23445689999999999999999975
No 294
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.20 E-value=0.0023 Score=48.39 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC------eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS------ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.|+|++++..+..... .+...+. .+.|.|.....++...|+|.+.+...
T Consensus 11 ~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 11 SKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred ccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 568899999999988765432 2222222 23455555556677789999987543
No 295
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.20 E-value=0.005 Score=49.48 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=34.7
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+..+|.|.++.. .|.|.|+|.+.+..........|.|..
T Consensus 77 g~asL~i~~v~~-sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRA-SDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEccccc-ccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 457899999999 999999999999998888888888864
No 296
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.18 E-value=0.0017 Score=49.06 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=33.9
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC----CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK----SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.|.+.|+|++++..+...........+ ..+.|.+.....++.+.|+|.+.+....
T Consensus 11 ~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 11 SKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred cCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5688999999999888643211111111 1234455444455566899999876443
No 297
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.16 E-value=0.0026 Score=49.95 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=50.1
Q ss_pred EEEEcCCeEEEEEEEee-ecCCceEEEECCeec-------------CCCCceEEEE--cCCeEEEEEcCceecCCceEEE
Q psy7039 365 MTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEV-------------SPDGRIKFET--SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l-------------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+.+.+|++++|.|.... .....+.|++..... ....++.+.. ......|+|.++.. .|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence 35789999999999865 345578999864211 1124555532 23456899999999 9999999
Q ss_pred EEEEcCC
Q psy7039 429 IQLVNTV 435 (516)
Q Consensus 429 c~a~n~~ 435 (516)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9987654
No 298
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.14 E-value=0.0015 Score=51.90 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=48.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---Cce-eeEEeeC-Ceee-c----cCCceEEeecCCe
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---PFL-NHGWSIN-GQVC-Q----IGGRADVQTTKSE 195 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~-~i~W~~~-~~~~-~----~~~~~~~~~~~~~ 195 (516)
+.+|+.++|.|...+ .....+-|++... ..+ -+..... .... . ...|+........
T Consensus 3 v~~G~~vtL~C~~~~--------------~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~ 68 (104)
T cd05720 3 AELGQKVELKCEVLN--------------SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNS 68 (104)
T ss_pred ccCCCeEEEEEEecC--------------CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCE
Confidence 578999999998861 1234566766532 122 1222211 1111 1 1345665555567
Q ss_pred eEEEeccCCCCCCeeEEEEEEc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
..|.|.+++.+|+|.|.|...+
T Consensus 69 ~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 69 FVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEECCCCHHHCEEEEEEEcc
Confidence 7899999999999999998753
No 299
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=97.13 E-value=0.0027 Score=48.07 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=55.0
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.+..++.+++.|+|++|. .++..+.+|. |.|...+.. ......
T Consensus 6 l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~--------------------------------v~~~~~~~~---~~~~~~ 49 (85)
T PF00041_consen 6 LSVSNISPTSVTVSWKPPS-SGNGPITGYR--------------------------------VEYRSVNST---SDWQEV 49 (85)
T ss_dssp EEEEEECSSEEEEEEEESS-STSSSESEEE--------------------------------EEEEETTSS---SEEEEE
T ss_pred eEEEECCCCEEEEEEECCC-CCCCCeeEEE--------------------------------EEEEecccc---eeeeee
Confidence 7888889999999999987 5666666662 333322211 012222
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
........+.|.+|.+ ...|.|++.|.|..|.+..
T Consensus 50 ~~~~~~~~~~i~~L~p-~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 50 TVPGNETSYTITGLQP-GTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp EEETTSSEEEEESCCT-TSEEEEEEEEEETTEEEEE
T ss_pred eeeeeeeeeeeccCCC-CCEEEEEEEEEeCCcCcCC
Confidence 2333444789999999 9999999999999986544
No 300
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.13 E-value=0.0051 Score=46.06 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred EEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..+..|++++|.|.....+.| .|.|...+.... .....+...|.+.++.. .|+|.++|.+....-......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~-qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGP-NDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCc-ccCCEEEEEEEECceEEEEEe
Confidence 367899999999999765554 999986553211 11223445789999999 999999999975543444555
Q ss_pred EEEEe
Q psy7039 443 KVYVV 447 (516)
Q Consensus 443 ~l~v~ 447 (516)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 55553
No 301
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.12 E-value=0.0027 Score=49.71 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCeEEEEEEEeeecCC-ceEEEECCee----c----C-C--------CCceEE-EEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 370 GEEFTITVPFSGRPKP-TPIWTVNGDE----V----S-P--------DGRIKF-ETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~-~i~W~~~~~~----l----~-~--------~~~~~~-~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
|++++|.|........ .+.|++.... + . . ..++.+ .......+|+|.++.. +|.|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence 6789999987544333 6899874321 0 0 0 112222 1123456899999999 999999999
Q ss_pred EE-cCCCceeEEEEEEE
Q psy7039 431 LV-NTVGSDSASCKVYV 446 (516)
Q Consensus 431 a~-n~~G~~s~s~~l~v 446 (516)
.. .+.|..+....|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 76 46777777777766
No 302
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.11 E-value=0.0024 Score=51.97 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=52.6
Q ss_pred cccEEEEcCCeEEEEEEEeee-cCCceEEEECCe--e---c---------CCCCceEEEE--cCCeEEEEEcCceecCCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGD--E---V---------SPDGRIKFET--SENQTIYRNKSAKRATDS 424 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~---l---------~~~~~~~~~~--~~~~~~l~i~~~~~~~~~ 424 (516)
+..+.+..|++++|.|..... ....+.|++... . + ...+++.+.. ..+..+|+|.++.. .|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence 456788999999999998654 445799997421 1 0 1135666542 34567899999999 999
Q ss_pred eEEEEEEEcC
Q psy7039 425 GSYTIQLVNT 434 (516)
Q Consensus 425 g~y~c~a~n~ 434 (516)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
No 303
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.10 E-value=0.0019 Score=50.35 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee--eEEeeCCeeeccCCceEE--eecCCeeEEEec
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN--HGWSINGQVCQIGGRADV--QTTKSETVLDIP 201 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--i~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~ 201 (516)
+.+|+.++|.|.+.+ +.|.++ |.|++++..+........ .......+|.+.
T Consensus 13 ~~eG~~~tL~C~v~g-------------------------~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~ 67 (100)
T cd05755 13 QPVGKNYTLQCDVPG-------------------------VAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT 67 (100)
T ss_pred ccCCCcEEEEEEEcC-------------------------cCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe
Confidence 579999999999994 678776 699999988864321110 012234566665
Q ss_pred cCCCCCCe-eEEEEEEcCCC
Q psy7039 202 FCSRSDTG-HYSLTLENNLG 220 (516)
Q Consensus 202 ~~~~~d~g-~Y~c~~~~~~g 220 (516)
.. ++|.| .|+|.+.+..+
T Consensus 68 ~~-r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 68 VD-REDHGANFSCETELDLR 86 (100)
T ss_pred cc-hhhCCcEEEEEEEeccC
Confidence 44 55555 79999987544
No 304
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.10 E-value=0.0031 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
....+|.|.+++.+|+|.|.|....
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~ 82 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNT 82 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEe
Confidence 4567999999999999999999864
No 305
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.08 E-value=0.0049 Score=47.86 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=50.1
Q ss_pred eEEEEEEEeeecC-CceEEEECCe----ec---C----------CCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 372 EFTITVPFSGRPK-PTPIWTVNGD----EV---S----------PDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 372 ~~~l~C~~~g~p~-~~i~W~~~~~----~l---~----------~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
+++|.|.....+. .+|.|.+... .+ . ..++..+. ......+|.|.++.. .|.|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v~ 80 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKAV 80 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEEE
Confidence 5778898864332 2789987421 11 0 01233332 223456899999999 99999999975
Q ss_pred -cCCCceeEEEEEEE
Q psy7039 433 -NTVGSDSASCKVYV 446 (516)
Q Consensus 433 -n~~G~~s~s~~l~v 446 (516)
.+.|...++..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57899998888877
No 306
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.08 E-value=0.0027 Score=51.08 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeE-EeeCCeeec----cCCceEEeec
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHG-WSINGQVCQ----IGGRADVQTT 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~-W~~~~~~~~----~~~~~~~~~~ 192 (516)
++..+.+.+|+++.|.|... .......+.|++.... ...+. +..+..... ...++.+...
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~-------------~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~ 73 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYS-------------SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGN 73 (114)
T ss_dssp EESEEEEETTSEEEEEEEEE-------------SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEE
T ss_pred eCCeEEEecCCCEEEEEEEe-------------CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeec
Confidence 35678899999999999987 0112233444442110 01111 111111110 1234443333
Q ss_pred --CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 193 --KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 193 --~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
....+|.|.+++.+|+|.|.|.+...
T Consensus 74 ~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 74 GSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred ccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 34779999999999999999998765
No 307
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.08 E-value=0.0041 Score=46.92 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=40.9
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.+ .|.+.|.|++++..+.... .......+ .+.|.+.-... ++...|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhcC
Confidence 579999965 4888999999998875332 11111111 12344444444 5667999999998765
No 308
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.06 E-value=0.0065 Score=45.94 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=42.4
Q ss_pred EEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCe------EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQ------TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~------~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.|. |...|.|+++|..+..... .....+.. +.|.+.-... ++...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~-d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTRE-DDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecch-hCCCEEEEEEECcccC
Confidence 5799999764 8889999999988764432 22222221 2344434445 6778999999998754
No 309
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.05 E-value=0.0033 Score=47.52 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=34.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC-----CeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK-----SETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.|+|++++..+............ ..+.|.|..-..++...|+|.+.+..
T Consensus 11 f~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 11 SKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred ccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 5788999999999987543222222111 12356665555556667999998753
No 310
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.02 E-value=0.0023 Score=49.88 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=47.3
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeeccCCc-eEEe--ecCC---eeEE
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQIGGR-ADVQ--TTKS---ETVL 198 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~~~~-~~~~--~~~~---~~~l 198 (516)
..|+.+.|.|.+. |. | .+.|+|++++..+..... .... .++. .+.|
T Consensus 11 ~~~~~~~L~C~a~--------------------------g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l 64 (95)
T cd00098 11 LLGGSVTLTCLAT--------------------------GFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQL 64 (95)
T ss_pred HcCCCeEEEEEEe--------------------------eEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEE
Confidence 4688999999999 65 5 478999999988865543 1111 1222 2345
Q ss_pred EeccCCCCCCeeEEEEEEcCCC
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
.|......+.+.|+|.+.+...
T Consensus 65 ~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 65 TVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred EECHHHhCCCCCEEEEEEeCCC
Confidence 6666666699999999988654
No 311
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.02 E-value=0.0069 Score=47.05 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=27.6
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc-CCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN-NLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~~~~~ 227 (516)
.....+|.|.+++.+|+|.|+|.+.+ ..|...++..
T Consensus 56 ~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~ 92 (96)
T cd05887 56 SLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTT 92 (96)
T ss_pred CCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEE
Confidence 34467999999999999999999754 4565555443
No 312
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.01 E-value=0.0033 Score=51.16 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=49.3
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-Ccee--eEEee-CCee-e--ccCCceEEeec
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLN--HGWSI-NGQV-C--QIGGRADVQTT 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~--i~W~~-~~~~-~--~~~~~~~~~~~ 192 (516)
.+..+.+.+|++++|.|...+ .......+-|++... ..+. +..+. .+.. . ....|+.....
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~------------~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~ 70 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASG------------FTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD 70 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeC------------CCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE
Confidence 345678899999999998761 001123355555422 1111 11111 1111 0 01245655533
Q ss_pred C--CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 193 K--SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 193 ~--~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
. ....|.|.+++.+|+|.|.|....
T Consensus 71 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 71 TSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 3 345799999999999999998764
No 313
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.01 E-value=0.0051 Score=52.97 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=63.8
Q ss_pred cccEEEEcCCeEEEEEEEe-eecCCceEEEECCeec----------CC--CCceE-EEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEV----------SP--DGRIK-FETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~~l----------~~--~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
.....+.+|+++.|.|... +...+.+.|++....+ .. .+++. +..+...+.++|.++.. +|.|.|
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY 100 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCY 100 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEE
Confidence 3456789999999999984 6567789999863211 11 12444 33444567899999999 999999
Q ss_pred EEEEEc-CCC-ceeEEEEEEEecC
Q psy7039 428 TIQLVN-TVG-SDSASCKVYVVDK 449 (516)
Q Consensus 428 ~c~a~n-~~G-~~s~s~~l~v~~~ 449 (516)
.|...- +.| ..+...-|+|++.
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEEch
Confidence 998764 456 6788888888763
No 314
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.97 E-value=0.004 Score=44.48 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=38.9
Q ss_pred CcCceeeEEeeCCeeeccCCc----eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGR----ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.+...+.|++++........ ...........|.|.++...|.|.|.|.+.+..
T Consensus 9 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 667789999998766543321 111123445689999999999999999998755
No 315
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.91 E-value=0.01 Score=46.07 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcC-CCceEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENN-LGTATASA 226 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~-~g~~~~~~ 226 (516)
.+.+|.|.|++.+|+|.|+|.+... .|...+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i 91 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVI 91 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEE
Confidence 4689999999999999999998754 45554444
No 316
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.89 E-value=0.01 Score=44.35 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=45.9
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
+.|.|.+.| .|...|.|++++..+............ ..+.|.|.--.. +|...|+|+|.|+.-. ...+..|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~e-DdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKE-DDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchh-hCCCEEEEEEcCcccCCceeeEEEEE
Confidence 578999875 566799999999888543221111111 224677755555 7777899999997632 333344444
No 317
>KOG4367|consensus
Probab=96.88 E-value=0.0016 Score=62.20 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=76.6
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
...++++|+|+.|. ..+.++.+|.++....++ .|..+.. +.++.++|.+|..+..|.-++.+.|..|.++.++...
T Consensus 450 t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~ 526 (699)
T KOG4367|consen 450 THNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLV 526 (699)
T ss_pred ccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCcccceeE
Confidence 46788999999764 555789999999988555 6655443 4789999999999999999999999999998876443
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeee
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEF 139 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~ 139 (516)
..+..-.- ..+...+.+.--+...+.++|.|..-
T Consensus 527 lqts~vaw--fqlt~spsqrdmilsnecatlsgssl 560 (699)
T KOG4367|consen 527 LQTSEVAW--FQLTPSPSQRDMILSNECATLSGSSL 560 (699)
T ss_pred eeecceee--eeccCCchhhceeeecccceeccccc
Confidence 33322111 11121333334455667777777543
No 318
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.87 E-value=0.0042 Score=49.31 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=46.7
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCee----c------C------------CCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDE----V------S------------PDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~----l------~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
+..|+.++|.|.+.......+.|++.... . . ...++..........|+|.+++. .|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-ENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HHC
Confidence 56899999999886554456889874321 0 0 02244444445667899999999 999
Q ss_pred eEEEEEEEc
Q psy7039 425 GSYTIQLVN 433 (516)
Q Consensus 425 g~y~c~a~n 433 (516)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998764
No 319
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.84 E-value=0.0078 Score=49.14 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=50.4
Q ss_pred cccEEEEcCCeEEEEEEEeeec------CCceEEEECCee------c---C--------CCCceEEE--EcCCeEEEEEc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP------KPTPIWTVNGDE------V---S--------PDGRIKFE--TSENQTIYRNK 416 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p------~~~i~W~~~~~~------l---~--------~~~~~~~~--~~~~~~~l~i~ 416 (516)
+..+.+..|+.++|.|...... ...+.|++.... + . ...++.+. ...+..+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4667899999999999875322 235899975321 0 0 11345442 24556789999
Q ss_pred CceecCCceEEEEEEEcC
Q psy7039 417 SAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n~ 434 (516)
+++. .|+|.|.|++...
T Consensus 86 ~l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQP-EDSGKYFFRVELG 102 (119)
T ss_pred cCCh-hhCeEEEEEEEcC
Confidence 9999 9999999998764
No 320
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.80 E-value=0.0063 Score=43.38 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=44.5
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCc----eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGR----IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~----~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
.|.|.+.+.+...+.|.+++........ ...........|.|.++.. .|.|.|.|.+.+..+
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~ 67 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSAG 67 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCcC
Confidence 5889998866779999998866533221 1111222346799999999 999999999988763
No 321
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.80 E-value=0.0059 Score=48.80 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=46.8
Q ss_pred EEEcCCeEEEEEEEeeec-CCceEEEECCee---c--------C-----------CCCceEEE--EcCCeEEEEEcCcee
Q psy7039 366 TVLAGEEFTITVPFSGRP-KPTPIWTVNGDE---V--------S-----------PDGRIKFE--TSENQTIYRNKSAKR 420 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p-~~~i~W~~~~~~---l--------~-----------~~~~~~~~--~~~~~~~l~i~~~~~ 420 (516)
.+..|++++|.|.+.+.. ...+.|++.... . . ...++... .......|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 467899999999987643 347999974321 0 0 02344432 223446799999999
Q ss_pred cCCceEEEEEEEcC
Q psy7039 421 ATDSGSYTIQLVNT 434 (516)
Q Consensus 421 ~~~~g~y~c~a~n~ 434 (516)
+|+|.|.|...+.
T Consensus 82 -~Dsg~YyCa~~~~ 94 (107)
T cd07700 82 -EDSGTYFCMTVGS 94 (107)
T ss_pred -HHCEEEEEeEcCC
Confidence 9999999998643
No 322
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.76 E-value=0.0083 Score=45.31 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.6
Q ss_pred EEEEEEEee-ecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.| .|...|.|+++|..+............+ .+.|.+..-.. ++...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhcC
Confidence 578999976 5667899999999875432222211111 13455554445 6677999999987644
No 323
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.71 E-value=0.0059 Score=47.64 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=46.0
Q ss_pred EEEcCCeEEEEEEEee-ecCCc--eEEEECCeecCCCCceEEE---EcCCeEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 366 TVLAGEEFTITVPFSG-RPKPT--PIWTVNGDEVSPDGRIKFE---TSENQTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g-~p~~~--i~W~~~~~~l~~~~~~~~~---~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
.+.+|+.++|.|.+.| .|.+. |.|++++..+.... +... ......++++.- .. +|.| .|+|+|.+.++.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~-~r-~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP-FGDNTKSPVNAPATITITV-DR-EDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce-eccccCCCceeEEEEEEec-ch-hhCCcEEEEEEEeccCc
Confidence 4689999999999976 55555 79999998875422 1110 011234566643 34 4555 899999998765
No 324
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.62 E-value=0.0055 Score=45.82 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.2
Q ss_pred CceEEeec--CCeeEEEeccCCCCCCeeEEEE
Q psy7039 185 GRADVQTT--KSETVLDIPFCSRSDTGHYSLT 214 (516)
Q Consensus 185 ~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~ 214 (516)
.|+.+... ....+|.|.+++.+|+|.|.|.
T Consensus 49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 45555443 5668999999999999999996
No 325
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.53 E-value=0.016 Score=44.44 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=42.5
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEeec-CC---eeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQTT-KS---ETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~-~~---~~~l~i~~~ 203 (516)
|+.+.|.|...+ +.|.+.|+|+.++..+.... ....... +. .+.|.+..-
T Consensus 14 ~~~~~~~C~s~~-------------------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~ 68 (89)
T PF08205_consen 14 GEEVTLTCSSSG-------------------------GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT 68 (89)
T ss_dssp TEEEEEEEEEEE-------------------------EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT
T ss_pred ceEEEEEEEeCC-------------------------eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC
Confidence 679999998874 88999999999988772111 1111111 11 245666554
Q ss_pred CCCCCeeEEEEEEcCCC
Q psy7039 204 SRSDTGHYSLTLENNLG 220 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g 220 (516)
...+...++|.+.+..-
T Consensus 69 ~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 69 REDHGKTLTCRASHPAL 85 (89)
T ss_dssp GGGTTEEEEEEEEETTC
T ss_pred hHHCCeEEEEEEECCcc
Confidence 44556679999987543
No 326
>KOG0613|consensus
Probab=96.53 E-value=0.01 Score=65.06 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=60.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
......+..+++.|...+...+. +.|++++.....+. .+..........+.|..+.+ .+.+.|.|.|.|..|....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccc
Confidence 34455667889999999988884 99998877654433 34444445566789999999 9999999999999998554
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
....++
T Consensus 422 ~~~~~v 427 (1205)
T KOG0613|consen 422 IAESTV 427 (1205)
T ss_pred cchhhc
Confidence 444444
No 327
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.41 E-value=0.039 Score=44.20 Aligned_cols=68 Identities=13% Similarity=0.285 Sum_probs=41.7
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCC------eeE
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKS------ETV 197 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~------~~~ 197 (516)
....|+.++|.|.+.+ ..| ...++|++|+..+..... .....+. .+.
T Consensus 17 ~~~~g~~~tL~C~a~g-------------------------F~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~ 70 (111)
T cd05772 17 RANPGQSVNFTCSAHG-------------------------FSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTST 70 (111)
T ss_pred ccCCCCCEEEEEEEee-------------------------EeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEE
Confidence 3456888999999993 345 479999999999864322 1221111 223
Q ss_pred EEeccCCCCCCee-EEEEEEcCC
Q psy7039 198 LDIPFCSRSDTGH-YSLTLENNL 219 (516)
Q Consensus 198 l~i~~~~~~d~g~-Y~c~~~~~~ 219 (516)
|.+.. ...|.|. |+|.+....
T Consensus 71 L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 71 VQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred EEEEC-ccccccCceEEEEEeCC
Confidence 44443 4444444 999987754
No 328
>PHA03376 BARF1; Provisional
Probab=96.27 E-value=0.04 Score=47.36 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=50.3
Q ss_pred cEEEEcCCeEEEEEEEee---ecCCceEEEECCe----ec-------------CCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 364 DMTVLAGEEFTITVPFSG---RPKPTPIWTVNGD----EV-------------SPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g---~p~~~i~W~~~~~----~l-------------~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
.+.+..|+++.|.|.... .....|.|++.+. .+ ....++.+....+..+|.|.++.. .|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence 356789999999998752 2444899999421 11 112334443445677899999999 99
Q ss_pred ceEEEEEEEcCC
Q psy7039 424 SGSYTIQLVNTV 435 (516)
Q Consensus 424 ~g~y~c~a~n~~ 435 (516)
.|+|+|..+-..
T Consensus 99 dGtY~C~fQkge 110 (221)
T PHA03376 99 DGNYLCRMKLGE 110 (221)
T ss_pred CceEEEEEEcCC
Confidence 999999998754
No 329
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.26 E-value=4.4 Score=49.48 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccc-eEEecCCeEEEEEeeeeccccccCcccccccccc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND-VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN 157 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~ 157 (516)
.-..|.+++.|.|..|... ....+.+..+..-+.|....+.. ..+..|..+.|.-...
T Consensus 1752 ~~G~y~VtVta~N~vss~~---~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vs------------------ 1810 (2740)
T TIGR00864 1752 SAGLHLVTMKAFNELGSAN---ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELA------------------ 1810 (2740)
T ss_pred CCceEEEEEEEEccccccc---eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEcc------------------
Confidence 3458899999999887554 24445554443334443222211 1345566666666555
Q ss_pred CccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEE--EEcCCCceEEEEEeeceee--
Q psy7039 158 STKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLT--LENNLGTATASAHVTGTEF-- 233 (516)
Q Consensus 158 ~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~--~~~~~g~~~~~~~~~~~~~-- 233 (516)
...+....|..++..-..++.. ..+..+.|.|... +.|..+....+..+.+.+.
T Consensus 1811 --------tGsnVsw~W~f~~g~s~~gk~v--------------~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~ 1868 (2740)
T TIGR00864 1811 --------TGTNVSWCWAIDGGSSKMGKHA--------------CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF 1868 (2740)
T ss_pred --------CCCeeEEEEEeCCCCcccccee--------------EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc
Confidence 4455677787764431111111 1345677888765 5566665554443332221
Q ss_pred ------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 234 ------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 234 ------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
....+..|+..+|.+... .| +...+.|+-.++...... .. ....+.-..-..|..++.|.|..+...
T Consensus 1869 ~L~L~as~~~~~~n~~v~fsa~l~--~G-S~Vtf~w~fGdgs~~~~t-~~---~t~~HsY~~~G~Y~VtV~A~N~Vs~~~ 1941 (2740)
T TIGR00864 1869 GLELKASKKIAAIGEKVEFQILLA--AG-SAVNFRLQIGGAAPEVLQ-PG---PRFSHSFPRVDDHMVNLRAKNEVSCAQ 1941 (2740)
T ss_pred eEEEecccccccCCCEEEEEEEec--CC-CceEEEEEeCCCCceeec-CC---CeEEeecCCCCcEEEEEEEEeccceee
Confidence 223455788888888762 33 356666754333322211 11 111222333456777788889888877
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i 387 (516)
....+.|..+-.- +.+.. . -...+..|+..+|.-.+....+..+
T Consensus 1942 a~~~V~Vle~V~g----L~I~~-------------------------------~-c~~~~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864 1942 ANLHIEVLEAVRG----LQIPD-------------------------------C-CAAGIATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred eeEEEEEEEeccc----eEecC-------------------------------C-cccceecCceEEEEEEEecCCceEE
Confidence 7777776543110 11000 0 0012567888888888766666678
Q ss_pred EEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 388 ~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.|+..-..+..+.. +...+....+.... .-.+..++.|.|..|.......+.|..+
T Consensus 1986 ~W~f~~~~~~g~~~--~~~~G~~vty~~~~----~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 1986 AWTFDLHHLHGDSL--VIHMGKDVSYTAEA----AGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred EEEeeecccCCCcc--eeecCCceEEccCC----CcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 99865333222222 11223333444422 2335557788899998777777777543
No 330
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.23 E-value=0.028 Score=45.70 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred cccEEEEcCCeEEEEEEEeeec--CCceEEEECCe--e---c--------------CCCCceEEEEcC--CeEEEEEcCc
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRP--KPTPIWTVNGD--E---V--------------SPDGRIKFETSE--NQTIYRNKSA 418 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~~--~---l--------------~~~~~~~~~~~~--~~~~l~i~~~ 418 (516)
+....+..|+.++|.|...... ...+.|++... . + ...++|...... ....|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456789999999999875433 34689987321 1 0 012355554333 3457999999
Q ss_pred eecCCceEEEEEEEc
Q psy7039 419 KRATDSGSYTIQLVN 433 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n 433 (516)
.. .|+|.|.|.+..
T Consensus 84 ~~-~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TP-EDTAVYYCARGL 97 (117)
T ss_pred CH-HHCEEEEEEEEc
Confidence 99 999999998865
No 331
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.21 E-value=0.011 Score=41.53 Aligned_cols=51 Identities=24% Similarity=0.233 Sum_probs=35.9
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRS 206 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 206 (516)
..|..|+|+|... +. .|.|.+++..+.. ....+.+.+-. +
T Consensus 5 isGTtVtlTCP~~--------------------------~~---~i~W~~n~~~~~g----------~~~~~~~~~~~-e 44 (65)
T cd07692 5 ISGTTVTVTCPLS--------------------------GD---DIKWKKNDQVSQG----------SDEKYLSLNHF-S 44 (65)
T ss_pred EeccEEEEECCCC--------------------------CC---CceEEeCCccCCC----------CCceEEeeccC-C
Confidence 4689999999865 32 2999998855542 22244555555 8
Q ss_pred CCeeEEEEEEc
Q psy7039 207 DTGHYSLTLEN 217 (516)
Q Consensus 207 d~g~Y~c~~~~ 217 (516)
+.|.|.|.+.+
T Consensus 45 ~~G~Y~C~~~~ 55 (65)
T cd07692 45 SSGYYHCTADN 55 (65)
T ss_pred CCceEEEEeCC
Confidence 89999999864
No 332
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.19 E-value=0.07 Score=42.75 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=42.6
Q ss_pred EEEcCCeEEEEEEEeeecC--CceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCce-EEEEEEEcCCCc
Q psy7039 366 TVLAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSG-SYTIQLVNTVGS 437 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g-~y~c~a~n~~G~ 437 (516)
....|+.++|.|.+.|.-+ ..+.|++||..+............+ .+.|.+.. .. .|.+ .|.|.+......
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~-~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TE-DDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-cc-ccccCceEEEEEeCCCC
Confidence 3456788999999987544 3899999998875322111111111 12344443 33 4444 499999887544
Q ss_pred e
Q psy7039 438 D 438 (516)
Q Consensus 438 ~ 438 (516)
.
T Consensus 95 ~ 95 (111)
T cd05772 95 A 95 (111)
T ss_pred C
Confidence 3
No 333
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.99 E-value=0.068 Score=42.61 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=56.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEe-CCCCeEEeE-EeecCCcEEEeCCCc--CCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAV-VVPAGETSCTVPGLI--EGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~-~~~~~~~~~-~~~~~~~~~~i~~l~--~~~~y~~~ 86 (516)
.+...+|.++++.+. .-...|.|+++. +..+-..|.|+|+. .++.|.... =.....+.+.+++.. ....|.++
T Consensus 19 ~~~lp~P~nv~~~s~-nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~r 95 (107)
T PF01108_consen 19 SASLPAPQNVTVDSV-NFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYAR 95 (107)
T ss_dssp -SSGSSCEEEEEEEE-TTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEE
T ss_pred cccCCCCCeeEEEEE-CCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEE
Confidence 455668999999855 666899999953 22345789999994 444898762 233466888888755 68899999
Q ss_pred EEEecC
Q psy7039 87 VRAVNA 92 (516)
Q Consensus 87 ~~a~n~ 92 (516)
|+|...
T Consensus 96 V~A~~~ 101 (107)
T PF01108_consen 96 VRAEVG 101 (107)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 998653
No 334
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=95.94 E-value=0.072 Score=41.37 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=27.7
Q ss_pred CeEEEEEcCceecCCceEEEEEEEc-CCCceeEEEEE
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVN-TVGSDSASCKV 444 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n-~~G~~s~s~~l 444 (516)
...+|.|.++.. .|.|.|+|.... +.|.....+.+
T Consensus 58 ~d~sI~i~nvt~-~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATE-EDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCc-ccCEEEEEEEEeCCCCCeEEEEEE
Confidence 346899999999 999999999876 46776665544
No 335
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.82 E-value=0.063 Score=41.52 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecC-cCc-eeeEEeeCCeeeccCCc-eEEee--cCCeeEEEeccC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPF-LNHGWSINGQVCQIGGR-ADVQT--TKSETVLDIPFC 203 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~-~~i~W~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~ 203 (516)
++.+.|.|.+. | .|. ..++|.+++..+..... ..... ++.......-.+
T Consensus 14 ~~~~~L~C~a~--------------------------gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v 67 (93)
T cd07698 14 DGSLTLSCHAT--------------------------GFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV 67 (93)
T ss_pred CCcEEEEEEEE--------------------------EEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE
Confidence 67899999999 5 344 58999999864332211 11111 111111222233
Q ss_pred CCCCCeeEEEEEEcCC
Q psy7039 204 SRSDTGHYSLTLENNL 219 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~ 219 (516)
...+...|+|.+.+..
T Consensus 68 ~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 68 PPEDKARYSCRVEHSG 83 (93)
T ss_pred CCCCCCEEEEEEEeCC
Confidence 3346677888876543
No 336
>KOG4258|consensus
Probab=95.74 E-value=0.089 Score=55.41 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=84.8
Q ss_pred ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEE
Q psy7039 325 IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404 (516)
Q Consensus 325 ~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~ 404 (516)
+.....+.+++.++|..-.-.+-....+|.....+.+.++.+...|..+ | -...|...........
T Consensus 494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~a---C-------g~~~W~~~~v~~~~~~---- 559 (1025)
T KOG4258|consen 494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDA---C-------GSNSWNVVDVDPPDLI---- 559 (1025)
T ss_pred eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccc---c-------ccCcceEEeccCCcCC----
Confidence 3445568889999998533322333344432223333333444444332 1 1345654433222000
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcC--CCc--eeEEEEEEEecCCCCCCCCccc--ccccCCeEEEEeeCCCCCC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNT--VGS--DSASCKVYVVDKPSPPQGPLDV--SDITPESCSLSWKPPLDDG 478 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~--~G~--~s~s~~l~v~~~p~~P~~~l~~--~~~~~~~~~l~W~~p~~~~ 478 (516)
...+...-..+.++.+ .+.|.|.+.+... .+. ...+-...|++.|..|..++.+ ..-+++.+.|+|+||.. .
T Consensus 560 p~~~~~~~~~l~~LkP-~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~-p 637 (1025)
T KOG4258|consen 560 PNDGTHPGFLLDGLKP-WTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQ-P 637 (1025)
T ss_pred CccccccceehhcCCc-cceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCC-C
Confidence 0011112367789999 9999999987632 122 1233445555555444333443 33345689999999874 4
Q ss_pred CCCcceEEEEEEecCCCc
Q psy7039 479 GSPITNYVVEKYESATGV 496 (516)
Q Consensus 479 ~~~i~~Y~v~~~~~~~~~ 496 (516)
++.+++|.|.++......
T Consensus 638 NG~lt~Ylv~wer~~~~~ 655 (1025)
T KOG4258|consen 638 NGNLTHYLVVWERQAEDG 655 (1025)
T ss_pred CCceeEEEEEEEeccCCc
Confidence 566999999998776544
No 337
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.74 E-value=0.085 Score=40.31 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=42.0
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 370 GEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 370 g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|+.+.+.|.+ .+.|.+.|.|+.++..+............. .+.|.+..-.. ++...|+|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~-~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTRE-DHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGG-GTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChH-HCCeEEEEEEECCccC
Confidence 6799999977 567888999999987661111111111111 13566654444 6778899999988644
No 338
>smart00406 IGv Immunoglobulin V-Type.
Probab=95.69 E-value=0.035 Score=41.31 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=37.6
Q ss_pred EEEEEEEeeecCC--ceEEEECCe---------------ec---CCCCceEEEEc--CCeEEEEEcCceecCCceEEEEE
Q psy7039 373 FTITVPFSGRPKP--TPIWTVNGD---------------EV---SPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 373 ~~l~C~~~g~p~~--~i~W~~~~~---------------~l---~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
+.|.|.+.....+ .+.|++... .. ....++.+... .+..+|.|.++.. .|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEEc
Confidence 5678877654443 678876431 00 11245554443 4567899999999 999999996
No 339
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.51 E-value=0.029 Score=44.14 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=25.0
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
...++.+.|.|.+.| ..| ...++|++++..+..
T Consensus 14 ~~~~~~~~L~C~~~g-------------------------fyP~~i~v~W~~~g~~~~~ 47 (100)
T cd07699 14 LEKSGKATLVCLIND-------------------------FYPGFATVQWKVDGATVSS 47 (100)
T ss_pred HccCCCcEEEEEEEe-------------------------EECCCCEEEEEECCEECcc
Confidence 445677999999992 244 578999999988753
No 340
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.48 E-value=0.1 Score=41.49 Aligned_cols=80 Identities=10% Similarity=-0.064 Sum_probs=48.8
Q ss_pred cceEEecCCeEEEEEeeeeccccccCcccccccccc--CccceeecCcCceeeEEee---C-Ceeec-cCCceEEe--ec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN--STKGWVKLSEPFLNHGWSI---N-GQVCQ-IGGRADVQ--TT 192 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~i~W~~---~-~~~~~-~~~~~~~~--~~ 192 (516)
....+..|..++|.|.++ |.... ..++|++. .|. .+.|-- . +.... ...++... ..
T Consensus 6 ~~~lv~p~~sv~LsC~~s-------------g~~~s~e~~~~wvRq-~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s 70 (115)
T cd05721 6 SPVLASSNGAASLVCEYT-------------YNGFSKEFRASLLKG-ADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLG 70 (115)
T ss_pred CCeEEcCCCCEEEEEEec-------------CCccccEEEEEEEEe-CCC-CcEEEEEEeCCCccccccCCCeEEeEeCC
Confidence 446678889999999987 22222 25566663 333 334421 1 11111 12344333 34
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.....|.|.+++.+|++.|.|..+
T Consensus 71 ~ntv~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 71 NEQVNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred CCEEEEEEcCCCHHHCeEEEEEee
Confidence 456799999999999999999764
No 341
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.36 E-value=0.16 Score=39.26 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-eEEEEcCCe--EEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-IKFETSENQ--TIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~~~~~~~~~--~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
++.+.|.|.+.|..++ .+.|.+++..+..... ......++. .....-.+.. .+...|+|.+.....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence 6789999999996444 8899999863322211 111112111 1112223445 577899999987654
No 342
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.35 E-value=0.094 Score=38.65 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=29.5
Q ss_pred cCc-eeeEEeeCCeeeccCCce-EEee--cCC---eeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 167 EPF-LNHGWSINGQVCQIGGRA-DVQT--TKS---ETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 167 ~p~-~~i~W~~~~~~~~~~~~~-~~~~--~~~---~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
.|. ..++|++++..+..+... .... ++. .+.|.|.....++...|+|.+...
T Consensus 12 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 12 YPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 344 689999999875432111 1111 111 234555555556667899988654
No 343
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.35 E-value=0.15 Score=39.45 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.9
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
.|+.+.|.|.+.| ..| ...++|.+++..+..
T Consensus 13 ~~~~~~L~C~~~g-------------------------FyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWG-------------------------FYPPEITVKWFKNGQEETE 44 (94)
T ss_pred CCCCeEEEEEEee-------------------------ecCCCCEEEEEECCeecCC
Confidence 5788999999992 234 358899999988764
No 344
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=95.23 E-value=0.14 Score=37.76 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=38.0
Q ss_pred EEEEEEEeee-cC-CceEEEECCeecCCCCc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 373 FTITVPFSGR-PK-PTPIWTVNGDEVSPDGR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 373 ~~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
++|.|.+.|. |. ..+.|+++|..+..+.. .......+ .+.|.|..... ++...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 5799999886 44 38999999986432211 11111111 13456655555 67789999987654
No 345
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.11 E-value=0.19 Score=39.80 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=49.6
Q ss_pred CCCcceEEEeeeCCeeEEEecCCC-----CCCCCc------eeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPI-----SDGGSP------ITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~-----~~~~~~------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
|||. +.+ ...++.+.|.+.+|. ...+.. -..|.|.+.+.+.. ............+.|.+|.++..|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCE
Confidence 5666 777 488999999999984 111111 13599998887775 222334446777899999999999
Q ss_pred EEEEEEe
Q psy7039 84 QFQVRAV 90 (516)
Q Consensus 84 ~~~~~a~ 90 (516)
-++++|.
T Consensus 81 Cv~V~~~ 87 (106)
T PF09294_consen 81 CVSVQAF 87 (106)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999993
No 346
>PHA02982 hypothetical protein; Provisional
Probab=95.05 E-value=0.064 Score=46.69 Aligned_cols=76 Identities=8% Similarity=0.131 Sum_probs=53.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------------
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------------ 183 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------------ 183 (516)
.++....++++.|.|.+.+ +..-.+..|+.++.....
T Consensus 32 ~dv~a~vd~~V~L~C~~~~-------------------------~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~ 86 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKD-------------------------ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGP 86 (251)
T ss_pred hhhhccCCCcEEEEecCCC-------------------------cchhhhheeeCCCCeEEEeeecCcceeccccccCCc
Confidence 3456677999999999773 444557778875432211
Q ss_pred -CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 184 -GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 184 -~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
...+.+.-.+..++|+|.++..+..|.|+|.+....+..
T Consensus 87 ~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 87 YKDKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKE 126 (251)
T ss_pred cceeEEEEEeccceeEEeccCCcccCCceEEEEecCCCch
Confidence 012333446778999999999999999999998755443
No 347
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.03 E-value=0.24 Score=38.31 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred EcCCeEEEEEEEeeecCC--ceEEEECCeecCCCC-ceEEEEcCC--eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 368 LAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDG-RIKFETSEN--QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~-~~~~~~~~~--~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..|...+|.|.+.|.-++ .+.|.++|..+..+. ......+++ ......-.+.. .....|.|.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCC
Confidence 357889999999986544 689999998765431 111111221 11111112334 455678888876543
No 348
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=94.86 E-value=0.29 Score=36.83 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=41.6
Q ss_pred CCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEE--cCCe----EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 370 GEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFET--SENQ----TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~--~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+..+.|.|.+.+..+. .|.|.+++..+.......... .++. +.|.+. . .....|.|.+......
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~-~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---W-NSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---T-TTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---C-CCCCEEEEEEEECCCC
Confidence 7889999999886544 799999998775433222111 1221 234443 4 6667899999876544
No 349
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.68 E-value=0.22 Score=39.02 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=40.4
Q ss_pred EcCCeEEEEEEEeeecC--CceEEEECCeecCCCCce-E-EEE-cCCe---EEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 368 LAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRI-K-FET-SENQ---TIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~-~-~~~-~~~~---~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+..++|.|.+.|..+ ..+.|+++|..+..+... . ... .+.. +.|.+..-.. ++...|.|.+.....
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~l 90 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEGL 90 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecCC
Confidence 35677899999988543 378999999887422110 0 111 1111 2444544433 346789999886643
No 350
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.67 E-value=0.26 Score=38.20 Aligned_cols=54 Identities=4% Similarity=0.009 Sum_probs=30.7
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.++|+|+++..... ........++. .+.|.+.....+|.-.|+|.+.+..-
T Consensus 27 gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 27 GKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 89999999999721110 00011111111 24666655555666679999987543
No 351
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.31 E-value=0.32 Score=37.53 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=37.9
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-eEEEEcCCeE--EEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-IKFETSENQT--IYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~~~~~~~~~~--~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.|....|.|.+.|--++ .+.|.++|..+. +.. .....+++.+ ...--.+.+ .+.-.|.|.+.-..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECC
Confidence 45667899999996544 689999998875 221 1111222211 111112345 56667999887643
No 352
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=94.22 E-value=0.31 Score=37.68 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=22.4
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeecc
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~ 183 (516)
++..+|.|.+.| ..| ...++|.++|..+..
T Consensus 15 ~~~~tL~C~a~g-------------------------FyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDN-------------------------FFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEE-------------------------EECCcCEEEEEECCeEccC
Confidence 556799999992 233 468899999988754
No 353
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.14 E-value=0.091 Score=41.42 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=23.7
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeecc
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQI 183 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~ 183 (516)
..|+.++|.|.+. |. | ...++|.+++..+..
T Consensus 14 ~~~~~~tL~C~a~--------------------------gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 14 SLQETATLTCLVK--------------------------GFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CcCCceEEEEEEe--------------------------eEeCCCCEEEEEECCEECCc
Confidence 3467899999999 43 3 357899999988754
No 354
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=94.11 E-value=0.45 Score=35.74 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=39.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEe---ecCCe---eEEEe
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQ---TTKSE---TVLDI 200 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~---~~~~~---~~l~i 200 (516)
.+..+.|.|.+.| ..| ...|.|.+++..+......... .++.. +.|.+
T Consensus 7 ~~~~~~L~C~v~~-------------------------f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v 61 (83)
T PF07654_consen 7 LGGSVTLTCLVSG-------------------------FYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTV 61 (83)
T ss_dssp STSEEEEEEEEEE-------------------------EBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEE
T ss_pred CCCCEEEEEEEEE-------------------------EECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEe
Confidence 3789999999992 233 4689999999988654322111 12211 24444
Q ss_pred ccCCCCCCeeEEEEEEcCCC
Q psy7039 201 PFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g 220 (516)
. ..+...|+|.+.....
T Consensus 62 ~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 62 T---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp E---TTTTGGEEEEEEETTS
T ss_pred c---CCCCCEEEEEEEECCC
Confidence 4 4445578888876543
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.10 E-value=0.22 Score=38.63 Aligned_cols=71 Identities=7% Similarity=0.059 Sum_probs=44.2
Q ss_pred cceEEecCCeEEE-EEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC---CeeE
Q psy7039 122 NDVKIKAGQSFSF-DVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK---SETV 197 (516)
Q Consensus 122 ~~~~v~~g~~~~l-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~ 197 (516)
..+.+.+|+.+.+ .|...+ |.|.++|+|+.+..... ........++ ..+.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~-------------------------gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~ 62 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAE-------------------------GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSE 62 (97)
T ss_pred CeeEeecCcceeEEEEEccC-------------------------CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEE
Confidence 3466788999999 998875 89999999998633221 1111111111 1235
Q ss_pred EEeccCCCCCCeeEEEEEEcC
Q psy7039 198 LDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
|.+.....+|.-.++|.+...
T Consensus 63 ~~l~p~r~d~G~~vtC~V~H~ 83 (97)
T cd07704 63 YIWVPSRHANGHPLTCVVSHP 83 (97)
T ss_pred EEEEeCHHHCCcEEEEEEeCc
Confidence 555555555666799998764
No 356
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=94.07 E-value=0.26 Score=38.14 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=31.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|.|.++|+|+++..... ........++. .+.|.+.....+|...|+|.+.+..-
T Consensus 27 gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 27 GRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred CCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 89999999998722111 00111111221 24566655555666679999988543
No 357
>KOG4258|consensus
Probab=94.03 E-value=0.3 Score=51.69 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=79.1
Q ss_pred cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC--------------CC-CeEEeEEeec-------CCcEEEeC
Q psy7039 18 TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--------------TG-NWEKAVVVPA-------GETSCTVP 75 (516)
Q Consensus 18 ~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~--------------~~-~~~~~~~~~~-------~~~~~~i~ 75 (516)
..+..+..+.++|.|+|..-...+--...+|.+.|++. +. .|......+. ...-+.+.
T Consensus 492 l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 492 LQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 34455556788999999873222223367999998753 11 3544433222 23357889
Q ss_pred CCcCCCeEEEEEEEecCCCC-CCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccc
Q psy7039 76 GLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGV 154 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~-~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~ 154 (516)
+|+|++.|-|.|++...... ......+....+++.+..| +++..+.....++-.|...|. +|.+|.|.
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P----spPl~~ls~snsSsqi~l~W~-------pP~~pNG~ 640 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP----SPPLDVLSKSNSSSQILLKWK-------PPSQPNGN 640 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC----CCcchhhhccCcchheeEEec-------CCCCCCCc
Confidence 99999999999998732211 1112334445555554555 334444444555556666676 67777776
Q ss_pred cccCccce
Q psy7039 155 RANSTKGW 162 (516)
Q Consensus 155 ~~~~~~~~ 162 (516)
-.++.+-|
T Consensus 641 lt~Ylv~w 648 (1025)
T KOG4258|consen 641 LTHYLVVW 648 (1025)
T ss_pred eeEEEEEE
Confidence 66665444
No 358
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.02 E-value=0.5 Score=36.42 Aligned_cols=29 Identities=14% Similarity=0.089 Sum_probs=22.7
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-c-CceeeEEeeCCeeec
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-E-PFLNHGWSINGQVCQ 182 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-p~~~i~W~~~~~~~~ 182 (516)
.|....|.|.+. | . +...++|.+|+..+.
T Consensus 14 ~g~~~~L~C~a~--------------------------gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVT--------------------------GFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEE--------------------------EEeCCCCEEEEEECCEECC
Confidence 466678999999 4 2 356889999999876
No 359
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.96 E-value=0.45 Score=36.99 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEcCCeEEEEEEEeee-cCC--ceEEEECCe
Q psy7039 367 VLAGEEFTITVPFSGR-PKP--TPIWTVNGD 394 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-p~~--~i~W~~~~~ 394 (516)
+..|+.++|.|.+.|. .++ .+.|.+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 5568889999999988 333 789999874
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=93.93 E-value=0.18 Score=39.12 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=23.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-cC-ceeeEEeeCCeeecc
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EP-FLNHGWSINGQVCQI 183 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~i~W~~~~~~~~~ 183 (516)
.+..+.|.|.+. + .| ...++|.+++..+..
T Consensus 15 ~~~~~tL~C~a~--------------------------gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLE--------------------------NFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEE--------------------------EEeCCCeEEEEEECCEECcC
Confidence 356789999999 4 33 568899999988654
No 361
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=93.92 E-value=0.56 Score=36.27 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=39.9
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCC-ce-EEEEcCCe----EEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDG-RI-KFETSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~-~~-~~~~~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
....+.|.|.+.|.-+. .|.|.++|..+..+. .. .....++. +.|.|..-.. .+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCee
Confidence 34568999999985443 789999998763221 11 11111111 2344443333 3567899999876543
No 362
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=93.86 E-value=0.17 Score=40.75 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.7
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIG 184 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~ 184 (516)
.+++.+.|.|.+.| ..|. ..++|++|+..+..+
T Consensus 16 ~~~~~~tL~Cla~g-------------------------FyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 16 RNKRKATLVCLATG-------------------------FYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred ccCCCcEEEEEEEe-------------------------EeCCCcEEEEEECCEECCCC
Confidence 35677899999992 2444 689999999887643
No 363
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=93.81 E-value=0.71 Score=35.68 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCce-EEEEcCCe-----EEEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRI-KFETSENQ-----TIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~-~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+...+|.|.+.|--+. .+.|.++|..+..+... ....+++. ..|.+ .+ .+...|+|.+.-..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~-~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TP-EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---EC-CCCCeEEEEEEeCC
Confidence 34557999999995443 78999999876542111 11111111 22333 34 55568999887653
No 364
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=93.74 E-value=0.28 Score=38.60 Aligned_cols=82 Identities=23% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEee---cCC-----cEEEeCCCcCCCeE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP---AGE-----TSCTVPGLIEGETY 83 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~---~~~-----~~~~i~~l~~~~~y 83 (516)
.+|+.|.++.+.+-+-..++..|++.. +++.+ ..|.+.|...+..|..+.... .+. +.|.-.+......|
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 468999999999888899999999963 34332 449999998777777775433 122 44444578899999
Q ss_pred EEEEEEecCCCC
Q psy7039 84 QFQVRAVNAAGP 95 (516)
Q Consensus 84 ~~~~~a~n~~g~ 95 (516)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999887663
No 365
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=93.73 E-value=0.61 Score=36.15 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=38.8
Q ss_pred CeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 371 EEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 371 ~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
....+.|.+ .|.|.+.|.|+++... ..........+ .+.|.+.-... ++.-.|+|.+.+..-..
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~-d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSRE-ANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCC
Confidence 456778998 5889999999987211 11111111111 13566655444 66668999999987543
No 366
>PHA02633 hypothetical protein; Provisional
Probab=93.62 E-value=0.18 Score=34.80 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.9
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
....|.|-++..+|+|.|.|..+|..-..+.++.+
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l 50 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDL 50 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEE
Confidence 34479999999999999999999866555544433
No 367
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.48 E-value=0.39 Score=37.81 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=38.8
Q ss_pred EcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceE--EEEc----CC---eEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 368 LAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK--FETS----EN---QTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~--~~~~----~~---~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
..+..++|.|.+.|..+. .+.|.++|..+....... .... +. .+.|.|..-.. .+...|.|.+....
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeCC
Confidence 346789999999986554 679999998764322111 1111 11 12344433222 34557999887654
No 368
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=93.41 E-value=0.36 Score=37.32 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=38.1
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCC---ceEEeecCC---eeEEEe
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGG---RADVQTTKS---ETVLDI 200 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~---~~~~~~~~~---~~~l~i 200 (516)
..+.+.|.|.+.| ..| ...++|.+++..+.... ......++. .+.|.|
T Consensus 13 ~~~~~~L~C~a~g-------------------------FyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v 67 (94)
T cd05847 13 TSETIQLLCLISG-------------------------YTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNV 67 (94)
T ss_pred CCCCEEEEEEEEe-------------------------EECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEE
Confidence 3456899999992 234 47899999998863221 111111121 123344
Q ss_pred ccCCCCCCeeEEEEEEcCCC
Q psy7039 201 PFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g 220 (516)
..-.-.+...|.|.+.....
T Consensus 68 ~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 68 TQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred chHHhcCCCeEEEEEEECCe
Confidence 43322345679999876543
No 369
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.09 E-value=0.34 Score=34.43 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.0
Q ss_pred eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 171 NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 171 ~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+|.|++ |..+.. ..+.+|.+.....+..|.|.|.+.+
T Consensus 18 si~W~k-G~~~~~---------~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 18 NITWKK-GKEILE---------VSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cEEEec-Cccccc---------ccccEEeccCcccCCCcceEecCcc
Confidence 599998 544431 1156888999999999999998765
No 370
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.01 E-value=0.53 Score=36.65 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=40.5
Q ss_pred ccceeec--CcCcee--eEEeeCCeeecc---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 159 TKGWVKL--SEPFLN--HGWSINGQVCQI---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 159 ~~~~~~~--~~p~~~--i~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
.+.|-+. +.+... ++|..+...... ..|+.. ...+.+|.|..++..|+|.|...+.+..|...
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F--~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNF--TSENLALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEE--ETTTTEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEee--eccCceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 4556333 344444 567655544433 234444 34567999999999999999999999888764
No 371
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=92.74 E-value=0.66 Score=36.01 Aligned_cols=30 Identities=3% Similarity=-0.136 Sum_probs=23.3
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSP 398 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~ 398 (516)
.+..++|.|.+.|--+. .+.|.++|..+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 45678999999985444 7899999987643
No 372
>PHA02633 hypothetical protein; Provisional
Probab=92.72 E-value=0.26 Score=34.09 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=33.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
....|.|-++..+|+|.|.|...|..-....++.+.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 45678899999999999999999887777777777776544
No 373
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=92.50 E-value=0.76 Score=35.59 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=40.0
Q ss_pred CeEEEEEEEe-eecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 371 EEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 371 ~~~~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+.|.+. |.|.+.|.|+.+..... .........+. .+.|.+.-... ++.-.|.|++.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~-d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPE-ANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHH-HCCCEEEEEEeCcccCCCeE
Confidence 4577899875 78888999998721110 00000111111 13566655455 66678999999987554333
No 374
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.46 E-value=0.6 Score=33.20 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
...+.|.|... -.|.|++ |..+.... ...|.+..+.. +..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~-DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRIN-DPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCccc-CCCcceEecCcc
Confidence 35688999652 4599999 54332111 24678888888 999999999877
No 375
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=92.26 E-value=0.39 Score=33.86 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=33.8
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
..|..|+|.|+..+. .+.|.+++..+..... .+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~--e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF--SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC--CCCceEEEEeCCC
Confidence 568999999986533 2899999865543211 22222222 5689999998543
No 376
>KOG4802|consensus
Probab=91.93 E-value=0.5 Score=45.65 Aligned_cols=86 Identities=16% Similarity=0.315 Sum_probs=57.5
Q ss_pred CCCCCCCcceEEEeeeCC---eeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeE----EeecCCcEEEeCCCcCCCeE
Q psy7039 11 FDEPGKPTDLEATDWDKD---HVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV----VVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~---~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~----~~~~~~~~~~i~~l~~~~~y 83 (516)
.-.|.+|.+|.+-.+..+ ..+|.|.++ ....||..|.|.|.-.-..++..+ ....+...+.|.+|.|+..|
T Consensus 250 pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~--~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y 327 (516)
T KOG4802|consen 250 PKAPPSPNDLKLIGVQFDGRYMLKVVWCPS--KSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSY 327 (516)
T ss_pred CCCCcCcccceeeeeeecceEEEEEEeCCC--CCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeE
Confidence 455678899988776543 267888886 455789999999875221010000 11112334559999999999
Q ss_pred EEEEEEecCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEA 98 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~ 98 (516)
.++++|....|.+..
T Consensus 328 ~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 328 YVEVQAISYLGSRRL 342 (516)
T ss_pred EEEEEEEEeccCccc
Confidence 999999988877654
No 377
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.78 E-value=42 Score=41.73 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=64.9
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
..|.++..|.|..|....+..+.+..+-.- +. | | .....+..|
T Consensus 1670 G~Y~VtL~aSN~vG~~t~s~~i~v~epi~~----L~----------L-~----------------------aS~~~aavn 1712 (2740)
T TIGR00864 1670 GPCDIFLQAANLLGQATADCTIDFLEPAGN----LM----------L-Q----------------------ASDNPAAVN 1712 (2740)
T ss_pred ceEEEEEEEeecccceeeEEEEEEEEEcCc----eE----------E-e----------------------ccCCcccCC
Confidence 345566678899999888877777653221 11 1 0 111234567
Q ss_pred CeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 371 EEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
+.+.|.....+.....+.|..++..-.. ........... . -..+..++.|.|..|....+..+.|..+
T Consensus 1713 ~~V~fs~~lt~GS~vty~W~~gdG~s~~-------~s~p~~tHtf~---~-~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864 1713 ALINLSAELAEGSGLQYRWFLEEGDDLE-------TSEPFMSHSFP---S-AGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred CeEEEEEEecCCCCcEEEEEECCCCCcc-------cCCCceEEEcc---C-CceEEEEEEEEccccccceeEEEEEEec
Confidence 7888877666777778899876642110 01111122221 1 2234456678899998877888888654
No 378
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=91.30 E-value=1 Score=41.15 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=37.6
Q ss_pred cCceeeEEeeC-CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 167 EPFLNHGWSIN-GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 167 ~p~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
--.|.+.|..+ +..+....+..+...| .|++.+....++|.|+|..+-.
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 35688999974 5566656667775444 6999999999999999998643
No 379
>PHA02982 hypothetical protein; Provisional
Probab=91.22 E-value=0.56 Score=41.07 Aligned_cols=75 Identities=13% Similarity=0.298 Sum_probs=54.4
Q ss_pred ccEEEEcCCeEEEEEEEeee-cCCceEEEECCee-c----------C--------CCCceEEEEcCCeEEEEEcCceecC
Q psy7039 363 RDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-V----------S--------PDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-l----------~--------~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
.++....++.+.|.|..... .-.+..|+.+... + . ....+..+.++..++|+|+++.. .
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~ 110 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-Q 110 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-c
Confidence 34556789999999997433 3347889874321 1 1 12356667788889999999999 9
Q ss_pred CceEEEEEEEcCCCce
Q psy7039 423 DSGSYTIQLVNTVGSD 438 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~ 438 (516)
..|-|+|.|....+..
T Consensus 111 N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 111 NLGCFTCEAKDAEGKE 126 (251)
T ss_pred cCCceEEEEecCCCch
Confidence 9999999999876653
No 380
>PHA03270 envelope glycoprotein C; Provisional
Probab=91.12 E-value=7.2 Score=38.41 Aligned_cols=79 Identities=25% Similarity=0.221 Sum_probs=55.5
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe--cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV--SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~--~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
...|.|..++..++|.|+=...+..+.......+.|. ..|...
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvs----------------------------------- 225 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLS----------------------------------- 225 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccc-----------------------------------
Confidence 3469999999999999999988766643332223333 333221
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVS 397 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~ 397 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.
T Consensus 226 -----v~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 226 -----IRPHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred -----ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 122346789999999999877655 699999998764
No 381
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=90.95 E-value=2.1 Score=34.46 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=40.7
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc--eEEEEcC-C----eEEEEEcCceecCC-ceEEEEEEEcCCCce
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR--IKFETSE-N----QTIYRNKSAKRATD-SGSYTIQLVNTVGSD 438 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~--~~~~~~~-~----~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~ 438 (516)
.+..++|.|.+.|.-+. .+.|.+++..+..+.. ....... + .+.|.|..-.. .+ .-.|.|.+.-.....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEEeCCcc
Confidence 45678999999886444 7899999987653321 0111111 1 13455543332 23 457999988765443
No 382
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=90.63 E-value=16 Score=34.79 Aligned_cols=194 Identities=14% Similarity=0.165 Sum_probs=94.4
Q ss_pred EecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 275 ~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
..+.....+|.++.++..|.+.+.|.|..-. ..+-.-..+.........+..+.+-.-..+.| ...+|.....|
T Consensus 10 Cvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l-----~~~~g~~~f~f 84 (300)
T PF10179_consen 10 CVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKL-----KGKGGFKFFSF 84 (300)
T ss_pred EcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEE-----CCcCceeEEEE
Confidence 3456678999999999999999999987433 33222222222111111223333221111121 11112111111
Q ss_pred cccccccccccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
. . +. .......+.|.... .|. ..+.-+.+|..+.....+ .+...+.+.++.+ .+.|..+..+.
T Consensus 85 ~-v-----P~--~~~~~~~~~l~v~~C~G~--V~v~i~r~gk~l~~~~~v-----~~~~~f~l~~~~~-g~~Yliri~~~ 148 (300)
T PF10179_consen 85 K-V-----PK--RSSTHQSLWLFVQSCSGS--VRVEISRNGKILLSQKNV-----EGLRHFRLSGVKP-GERYLIRIQIS 148 (300)
T ss_pred c-C-----Cc--CCCCCccEEEEEEeCCCe--EEEEEEECCeEEeeeecc-----cceEEEEECCCCC-CCeEEEEEEcc
Confidence 0 0 00 00011122221111 122 345555666554322111 1335788888877 66666666556
Q ss_pred cCCCceeEEEEEE-Ee------cCCCCCCCCccccc----ccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 433 NTVGSDSASCKVY-VV------DKPSPPQGPLDVSD----ITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 433 n~~G~~s~s~~l~-v~------~~p~~P~~~l~~~~----~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
|.... .....+. +. .-|..| .+..+.. -+-++++|.|.+.. +.. ..|-|..++....
T Consensus 149 ~~~e~-~~~~kV~aast~~~~~~~P~LP-~d~~Ik~f~~lrtC~SvTIAW~~s~-d~~---~kYCvy~~~~~~~ 216 (300)
T PF10179_consen 149 NSDEG-PSTFKVQAASTNPSKQPYPQLP-DDTSIKEFNKLRTCNSVTIAWLGSP-DRS---IKYCVYRREEHSN 216 (300)
T ss_pred CCCCC-ceEEEEEEecCCcccCCCCCCC-CCCceeEEcCCcccceEEEEEecCC-CCC---ceEEEEEEEecCc
Confidence 65433 3333443 22 224556 5555533 33489999999743 322 4599988877665
No 383
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.50 E-value=1.6 Score=33.95 Aligned_cols=14 Identities=7% Similarity=-0.043 Sum_probs=11.9
Q ss_pred EecCCeEEEEEeee
Q psy7039 126 IKAGQSFSFDVKEF 139 (516)
Q Consensus 126 v~~g~~~~l~C~~~ 139 (516)
+..|+.+.|.|.+.
T Consensus 11 l~~~~~~tLtC~v~ 24 (96)
T cd07696 11 LLLTKSVKLTCLVT 24 (96)
T ss_pred hccCCCeEEEEEEe
Confidence 45678899999999
No 384
>KOG1480|consensus
Probab=90.47 E-value=0.15 Score=53.10 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=75.2
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANS 158 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~ 158 (516)
--+.|..+|.|-.+.|..+.......+-.. ...+. ..+..-.|.++....+.|...-
T Consensus 99 ~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~----rk~f~-~~p~~q~V~~~s~~~l~cr~pe------------------ 155 (909)
T KOG1480|consen 99 GPEDYWCQCVAWSDDGTVKSRKATVRIAYL----RKHFE-QSPVGQEVQEETTLQLPCRPPE------------------ 155 (909)
T ss_pred CccceeeeeeeecCCCcchhhhHHHHHHHH----HHhhc-cChhhheecccccccccccCcc------------------
Confidence 456899999998888854432222111110 11111 3444566778888888887651
Q ss_pred ccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 159 TKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 159 ~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|...+.|++++..+++....... ....|.|..+...|.|+|+|.+.|-.+...
T Consensus 156 -------~~paae~~w~k~e~~~~pd~n~~~~---~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 156 -------GDPKAEVEWLKNEVVIDPDANVIRA---SDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred -------cchhhhhhccccCCCCCccccchhh---hcCCccccchhhhhcccceeeeehhhcccc
Confidence 7888999999999888764333222 234789999999999999999998776654
No 385
>PHA03273 envelope glycoprotein C; Provisional
Probab=90.41 E-value=11 Score=37.56 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=69.8
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE--ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV--VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v--~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
..|.|..++..++|.|+=...+..+.......+.| ...|...
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvs------------------------------------ 241 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVD------------------------------------ 241 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccc------------------------------------
Confidence 46999999999999999776665554333334444 3333321
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCC----ceEEEEcCC---eEEEEEcCceecCCceEE
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDG----RIKFETSEN---QTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~----~~~~~~~~~---~~~l~i~~~~~~~~~g~y 427 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.... .+.....+. .+.|++......+..=..
T Consensus 242 ----v~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~l 317 (486)
T PHA03273 242 ----LSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSL 317 (486)
T ss_pred ----ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCc
Confidence 122346889999999999877555 699999998876211 111111122 133445443221333478
Q ss_pred EEEEEcCC
Q psy7039 428 TIQLVNTV 435 (516)
Q Consensus 428 ~c~a~n~~ 435 (516)
+|.+.=..
T Consensus 318 rC~v~W~r 325 (486)
T PHA03273 318 RCSIEWYR 325 (486)
T ss_pred eEEEEEcc
Confidence 99876433
No 386
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=90.04 E-value=1.5 Score=33.91 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=40.2
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc--eeeEEeeCCeeeccCCceEEe----e-cCCeeEE
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF--LNHGWSINGQVCQIGGRADVQ----T-TKSETVL 198 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~----~-~~~~~~l 198 (516)
+.+|..+++.|.+.+ ..|. ..+.|++....+.... +.-. . ......+
T Consensus 12 l~~G~~vtv~C~v~~-------------------------v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~v 65 (99)
T cd07689 12 LEEGKPVTVKCEVPD-------------------------VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEV 65 (99)
T ss_pred ccCCceEEEEEEecC-------------------------cccCCceEEEEecCcceecccc-cccccccCCCCCcceeE
Confidence 378999999999983 3444 7889988665554321 1100 0 1112344
Q ss_pred EeccCCCCCCe-eEEEEEEcC
Q psy7039 199 DIPFCSRSDTG-HYSLTLENN 218 (516)
Q Consensus 199 ~i~~~~~~d~g-~Y~c~~~~~ 218 (516)
.|.. +++|.| .|+|.|.-.
T Consensus 66 tftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 66 TFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred EEec-chhhCCcEEEEEEEEe
Confidence 4544 377777 699998643
No 387
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=89.92 E-value=3.7 Score=31.83 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=43.2
Q ss_pred ccEEEEcCCeEEE-EEEE-eeecCCceEEEECCeecC-------CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 363 RDMTVLAGEEFTI-TVPF-SGRPKPTPIWTVNGDEVS-------PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l-~C~~-~g~p~~~i~W~~~~~~l~-------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
....+.+|+.+.+ .|.+ .|.|.+.|.|+.+..... .++.+.+. +.|.+..... ++.-.+.|.+..
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~-----S~~~l~p~r~-d~G~~vtC~V~H 82 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT-----SEYIWVPSRH-ANGHPLTCVVSH 82 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE-----EEEEEEeCHH-HCCcEEEEEEeC
Confidence 3456778888888 7876 578888999997632211 11122222 3566644445 677789999987
Q ss_pred CCC
Q psy7039 434 TVG 436 (516)
Q Consensus 434 ~~G 436 (516)
..-
T Consensus 83 ~al 85 (97)
T cd07704 83 PAL 85 (97)
T ss_pred ccc
Confidence 743
No 388
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=89.91 E-value=5.1 Score=31.20 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecC---CcEEEeCCCcC----CCeEEEEE
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAG---ETSCTVPGLIE----GETYQFQV 87 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~---~~~~~i~~l~~----~~~y~~~~ 87 (516)
+|.+|++..-+...+..+|.+- ....+-+.|.+.+..... ....+...... .....+..... ...+.+.+
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g--~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPG--KEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECC--TTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCC--CCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 4789999988889999999872 223345799999988664 34444444333 24445554443 34677888
Q ss_pred EEecCCCC
Q psy7039 88 RAVNAAGP 95 (516)
Q Consensus 88 ~a~n~~g~ 95 (516)
.+.+..|.
T Consensus 79 ~~ss~~~~ 86 (99)
T PF09240_consen 79 NGSSSAGS 86 (99)
T ss_dssp EEEETTEE
T ss_pred EeccCCCc
Confidence 77766554
No 389
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.89 E-value=0.59 Score=36.41 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.1
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecC-c-C-ceeeEEeeCCee
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-E-P-FLNHGWSINGQV 180 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-p-~~~i~W~~~~~~ 180 (516)
+..+..++|.|.+. + . | ...++|.+++..
T Consensus 16 l~~~~~atLtClV~--------------------------~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLS--------------------------GLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEe--------------------------ccCCCCCeEEEEEECCcc
Confidence 34578899999999 4 2 3 468999998765
No 390
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=89.88 E-value=1.2 Score=34.41 Aligned_cols=69 Identities=7% Similarity=-0.017 Sum_probs=40.9
Q ss_pred EEEcCCeEEEEEEEeee-cC--CceEEEECCeecCCCCceEE----EEcCCeEEEEEcCceecCCce-EEEEEEEcCCC
Q psy7039 366 TVLAGEEFTITVPFSGR-PK--PTPIWTVNGDEVSPDGRIKF----ETSENQTIYRNKSAKRATDSG-SYTIQLVNTVG 436 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~l~~~~~~~~----~~~~~~~~l~i~~~~~~~~~g-~y~c~a~n~~G 436 (516)
.+..|..+++.|.+.+. |. ..+.|+++...+........ ........+++.-. . +|.| .|.|+|.-..+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-r-eD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-I-EDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-h-hhCCcEEEEEEEEeec
Confidence 34799999999999754 43 36899877665543221110 00112234555443 4 5555 89999986554
No 391
>PHA03269 envelope glycoprotein C; Provisional
Probab=89.70 E-value=11 Score=37.86 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=54.2
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC-CCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY-GID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~-g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
+...|.|..++..++|.|+=.+.+.. +.. ...+.+.+...|...
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs--------------------------------- 333 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT--------------------------------- 333 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc---------------------------------
Confidence 34579999999999999986665432 222 233444444444321
Q ss_pred ccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecC
Q psy7039 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVS 397 (516)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~ 397 (516)
....-+..|+...-.|.+...-++ .+.|+.++..+.
T Consensus 334 -------V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~ 372 (566)
T PHA03269 334 -------VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIG 372 (566)
T ss_pred -------ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccC
Confidence 122346889999999999877655 699999988775
No 392
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.69 E-value=2 Score=32.76 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=44.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
..+..|++++..|...++... ......|.|+.++..+ +..++... .+..+.+++.++
T Consensus 13 pvv~lGS~vtasC~l~~~c~~---------------------~~~a~~I~Wkln~~~i-P~~qy~~i-n~~~SsVT~~~~ 69 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSH---------------------SVNASQIVWKLNGEKI-PGSQYRVI-NDTVSSVTLPNL 69 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHC---------------------T-STTCEEEECSSCES-TCGCEEEE-STTEEEEEESS-
T ss_pred CEEeCCCCEEEEEEEECCCCC---------------------CcccceEEEEECCEEC-ChhHccee-CCeEEEEEEccC
Confidence 457899999999998721110 2356689999998844 45555554 344488899988
Q ss_pred CCCCCeeEEEEE
Q psy7039 204 SRSDTGHYSLTL 215 (516)
Q Consensus 204 ~~~d~g~Y~c~~ 215 (516)
....+-.|.|..
T Consensus 70 ~~~~~~L~cC~l 81 (89)
T PF06328_consen 70 NPTGATLFCCKL 81 (89)
T ss_dssp -SSEEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 877777777764
No 393
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.38 E-value=3.4 Score=31.97 Aligned_cols=65 Identities=8% Similarity=0.089 Sum_probs=36.7
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCc-e-EEEE-cCCe---EEEEEcCceecCCceEEEEEEEcCC
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGR-I-KFET-SENQ---TIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~-~-~~~~-~~~~---~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.++.+.|.|.+.|.-+. .+.|.++|.. ..+.. . .... .+.. +.|.+..-.- ...-.|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence 45678999999986543 7899999986 32210 0 1111 1111 2344433221 22557999988654
No 394
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=89.30 E-value=5.4 Score=28.41 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
...+.|.++.+ ...|.+++.|.+..|
T Consensus 56 ~~~~~i~~L~~-~~~Y~v~v~a~~~~g 81 (83)
T smart00060 56 STSYTLTGLKP-GTEYEFRVRAVNGAG 81 (83)
T ss_pred ccEEEEeCcCC-CCEEEEEEEEEcccC
Confidence 35688999999 888888888887654
No 395
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=89.22 E-value=5.3 Score=29.41 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
....+.|.++.+ ...|.+++.+.+..|.+
T Consensus 55 ~~~~~~i~~l~p-~~~Y~~~v~a~~~~~~~ 83 (93)
T cd00063 55 SETSYTLTGLKP-GTEYEFRVRAVNGGGES 83 (93)
T ss_pred cccEEEEccccC-CCEEEEEEEEECCCccC
Confidence 445788889999 88888898888765543
No 396
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=88.74 E-value=1.9 Score=35.33 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=39.6
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc---C-Cce--------EE-eecCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI---G-GRA--------DV-QTTKS 194 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~---~-~~~--------~~-~~~~~ 194 (516)
=.+++.|.|.+.+ +.+. ..+...+.|.+++..+-. . .+. .+ ....+
T Consensus 26 CN~tV~IPC~v~n-------------~~~~--------ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG 84 (130)
T PF08204_consen 26 CNDTVVIPCFVNN-------------LEAN--------NISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKG 84 (130)
T ss_dssp T-SEEEE--BBSS----------------S--------SGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGT
T ss_pred cCCCEEEEeEecc-------------cccc--------ccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCC
Confidence 3688999999971 0000 235567899998876531 1 101 11 01223
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
..+|.+.....- .|.|+|.+.....+.+..
T Consensus 85 ~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~ 114 (130)
T PF08204_consen 85 NASLKMDKSDAV-EGNYTCEVTELSREGETT 114 (130)
T ss_dssp B--EEEEHHHHH--EEEEEEEEETTEEEEEE
T ss_pred CEEEEEcchhcc-ccceEEEEEecCCCceEE
Confidence 456777765444 899999998765544433
No 397
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=87.91 E-value=3.7 Score=32.83 Aligned_cols=67 Identities=4% Similarity=0.029 Sum_probs=44.9
Q ss_pred cEEEEcCCeEEEEEEEeeecC---CceEEEECCee--------------c-CCCCce--EEEEcCCeEEEEEcCceecCC
Q psy7039 364 DMTVLAGEEFTITVPFSGRPK---PTPIWTVNGDE--------------V-SPDGRI--KFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~---~~i~W~~~~~~--------------l-~~~~~~--~~~~~~~~~~l~i~~~~~~~~ 423 (516)
...+..|..+.|.|.+.|... ..+.|.+.... . ....++ ....+.+...|.|.++.. +|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-NQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-HH
Confidence 356778888999999966433 35778763211 0 012233 333445667899999999 99
Q ss_pred ceEEEEEE
Q psy7039 424 SGSYTIQL 431 (516)
Q Consensus 424 ~g~y~c~a 431 (516)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999975
No 398
>PHA03271 envelope glycoprotein C; Provisional
Probab=87.87 E-value=29 Score=34.16 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=70.4
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
......+.|.++...++|.|+....+..... .....+.+...|+..
T Consensus 203 tt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV-------------------------------- 250 (490)
T PHA03271 203 TTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV-------------------------------- 250 (490)
T ss_pred ccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc--------------------------------
Confidence 3455688999999999998877666544332 233334444443321
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCCc---eE--EEEcCC---eEEEEEcCceecC
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDGR---IK--FETSEN---QTIYRNKSAKRAT 422 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~~---~~--~~~~~~---~~~l~i~~~~~~~ 422 (516)
.....-+..|+...-.|.+...-++ .+.|+.+|........ +. .....+ .+.+.+.+... +
T Consensus 251 -------sV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~-~ 322 (490)
T PHA03271 251 -------DVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGI-D 322 (490)
T ss_pred -------cccCCccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccC-C
Confidence 1112246789999999999877665 6999999877643221 11 111111 12344434333 3
Q ss_pred CceEEEEEEEcCCC
Q psy7039 423 DSGSYTIQLVNTVG 436 (516)
Q Consensus 423 ~~g~y~c~a~n~~G 436 (516)
..=..+|.+.=..+
T Consensus 323 ~PPsLRCeV~W~rd 336 (490)
T PHA03271 323 PPPKISCLVAWKQG 336 (490)
T ss_pred CCCCceEEEEEccC
Confidence 44478998764444
No 399
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=86.63 E-value=34 Score=33.54 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=50.9
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.....+|+|..+.....|=|+|.|....-.....-.+.|. +.+.+.|.
T Consensus 342 dlk~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-----------------d~V~f~W~--------------- 389 (500)
T PHA02914 342 DLKNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVA-----------------DHVFFKWN--------------- 389 (500)
T ss_pred chhhceEEeeeEEEEcCCceEEEEecCcchhhhhhheEec-----------------cEEEEEEE---------------
Confidence 3456789999999999999999998765444444444432 24556675
Q ss_pred cccccccccEEEEcC-CeEEEEEEEeee--cCCceEEEECCeec
Q psy7039 356 ITSDLSIRDMTVLAG-EEFTITVPFSGR--PKPTPIWTVNGDEV 396 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g-~~~~l~C~~~g~--p~~~i~W~~~~~~l 396 (516)
..| ....+.|-+... .++.+.|..+|...
T Consensus 390 ------------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 390 ------------TEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred ------------eccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 233 334567877544 34479999988654
No 400
>KOG4597|consensus
Probab=86.35 E-value=2.6 Score=41.76 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=57.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee---CCeeeccCCceEEe--ecC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI---NGQVCQIGGRADVQ--TTK 193 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~---~~~~~~~~~~~~~~--~~~ 193 (516)
.-+..-.+..+++.++.|-.. |.+.+.++|.+ +...+.....-.+. ...
T Consensus 201 ~cpa~w~vg~wetcS~tCg~~--------------------------G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vt 254 (560)
T KOG4597|consen 201 DCPAEWFVGDWETCSSTCGVQ--------------------------GRQYRVVTCEQVFANRENVVMRPNQTVENPVVT 254 (560)
T ss_pred cCcchhhcccchhhccccccc--------------------------CCcCceeeeehhhccccceeecCccccCCccee
Confidence 444455678899999999999 99999999986 22222111111111 012
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
....|.|-+....|+|-|+|.+.+..|.....+.
T Consensus 255 stcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~ 288 (560)
T KOG4597|consen 255 STCQLVICNEWQADAGWYTCSARCGAGFLRRDVP 288 (560)
T ss_pred eeeeEEEcchhhcCCCceeeccccccceeeccce
Confidence 2357899999999999999999998887665543
No 401
>PHA03271 envelope glycoprotein C; Provisional
Probab=86.29 E-value=14 Score=36.30 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
.+..+.|.++.-.++|.|++...+.. ..+. ....++.....-+|.+... .--+..|+...-.|.+.+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~--N~~i-~e~~~~~~v~~RPPsVsV~---a~PVL~Ge~YkAtC~vAn------- 271 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPF--NRPL-LDKHIYIRVCQRPASVDVL---APPVLSGENYKASCIVRH------- 271 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCC--CCcc-ccceEEEEEEecCCCcccc---CCccccCCCceEEEEeee-------
Confidence 35668899999999998877654432 2221 1111222222234444322 233678999999999981
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI 183 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~ 183 (516)
|++ .-+..+.|+.||..+..
T Consensus 272 --------------YYP--P~SvrlrWf~nG~~V~~ 291 (490)
T PHA03271 272 --------------FYP--PGSVYVSWRQNGNIATP 291 (490)
T ss_pred --------------ecC--CCceEEEEEeCCccccC
Confidence 222 12468999999887754
No 402
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=85.74 E-value=3.5 Score=31.92 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=21.0
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecC-cC-ceeeEEeeCCee
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EP-FLNHGWSINGQV 180 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p-~~~i~W~~~~~~ 180 (516)
.++.+.|.|.+. + .| ...++|.+++..
T Consensus 15 ~~~~~~L~C~a~--------------------------gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLAT--------------------------GFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEe--------------------------eEECCCcEEEEeECCEE
Confidence 355689999999 4 23 568899999987
No 403
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=85.74 E-value=1.9 Score=35.24 Aligned_cols=79 Identities=8% Similarity=0.152 Sum_probs=44.5
Q ss_pred EEcCCeEEEEEEEeee-----cCCceEEEECCeecC--CCC--ceE--------E-EEcCCeEEEEEcCceecCCceEEE
Q psy7039 367 VLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVS--PDG--RIK--------F-ETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~--~~~--~~~--------~-~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
....+++.|.|.+... +...|.|..++..+- .+. ... + ....+..+|.+..... -.|.|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a--~~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA--VEGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH--H-EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc--cccceE
Confidence 4567899999999652 223589999886541 111 010 0 0112345688877554 389999
Q ss_pred EEEEcCCCceeEEEEEEEe
Q psy7039 429 IQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~ 447 (516)
|.+......+...+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999887777776666653
No 404
>PHA03270 envelope glycoprotein C; Provisional
Probab=85.42 E-value=41 Score=33.40 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=48.2
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
..|.|..++...+|.|+-...+..+.......+.+..| ....+..|+.|.-.|.+-+---.....+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 36999999999999999998776664433333443333 34567789999999998443323344677864
No 405
>KOG4802|consensus
Probab=84.87 E-value=11 Score=36.91 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=46.4
Q ss_pred eeeCCeeEEEecCCCCCCCCceeceEEEEE------------eCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 24 DWDKDHVDLQWTPPISDGGSPITGYVVEMK------------DKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 24 ~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~------------~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.....++.+.|..-. .+.-|.+.+. +.+. .|..+... .....+.+.+++|+.-|+|++.|+
T Consensus 156 r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t-~~e~~~~~t~~rPgRwyefrvaav 229 (516)
T KOG4802|consen 156 RRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKT-MEENTYIFTDMRPGRWYEFRVAAV 229 (516)
T ss_pred hhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeec-CCCceeeeeecCcceeEEEEEeee
Confidence 356777999997621 1233333322 1111 45554333 234478888999999999999999
Q ss_pred cCCCCCCCCCCCc
Q psy7039 91 NAAGPGEASKPTA 103 (516)
Q Consensus 91 n~~g~~~~s~~~~ 103 (516)
|..|....+.++.
T Consensus 230 n~~G~rGFs~PSk 242 (516)
T KOG4802|consen 230 NAYGFRGFSEPSK 242 (516)
T ss_pred ecccccccCCCCC
Confidence 9998755444443
No 406
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=84.85 E-value=5.7 Score=30.96 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred EEcCCeEEEEEEEeeec--C-CceEEEECCeecCCCCceEEEE-cCC---eEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 367 VLAGEEFTITVPFSGRP--K-PTPIWTVNGDEVSPDGRIKFET-SEN---QTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p--~-~~i~W~~~~~~l~~~~~~~~~~-~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
...+..+.|.|.+.+.. . ..|.|.+++.. .......... ++. .+.|.|..-.. ...-.|+|.+.....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W-~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEW-NKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHh-cCCCeEEEEEECCCc
Confidence 34577899999998854 3 37999999864 1100000011 111 13455543222 223459999987654
No 407
>PHA03269 envelope glycoprotein C; Provisional
Probab=82.26 E-value=60 Score=32.84 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=45.7
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
+.-.|.|.+++..++|.|.-...+.. +.......+.+.. .....+.+|+.|.-.|.+.+---.....+.|+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 34579999999999999987665322 2222222222222 244567789999999998443333344677865
No 408
>KOG1480|consensus
Probab=81.33 E-value=1.2 Score=46.85 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=48.4
Q ss_pred eccccCCceEEEEEEEEccCCCCCceeccccc--ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL--IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
-..+..+....+.|.. ..|.|+..+.|.+. ......-........+++..+...|.|+|+|.|.|..+..
T Consensus 138 ~q~V~~~s~~~l~cr~--pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 138 GQEVQEETTLQLPCRP--PEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hheecccccccccccC--cccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 3455666677777766 47888888999652 1222222223456788889999999999999999987654
No 409
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=80.87 E-value=6.4 Score=38.25 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.2
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.++|+|..+..+.+|.|.|++....
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGK 369 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCc
Confidence 5799999999999999999997643
No 410
>PHA03042 CD47-like protein; Provisional
Probab=80.39 E-value=9.1 Score=35.34 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred EEcCCeEEEEEEEeee-----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 367 VLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
....+++.+.|.++.- ....+.|..++..+.. .... +.++|+++... .-.|+|+|.|.+........
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~-----~n~t-n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK-----KNNT-NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE-----ecCC-cceEEEEeccc--cCCCceeEEEeecccCccEE
Confidence 4567889999998653 3446999999875421 1111 23567775543 56899999999876555444
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
..+..
T Consensus 100 IeLk~ 104 (286)
T PHA03042 100 IELQY 104 (286)
T ss_pred EEEEE
Confidence 44444
No 411
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=79.47 E-value=3.1 Score=38.12 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred cCCceEEEECC-eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 383 PKPTPIWTVNG-DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 383 p~~~i~W~~~~-~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+|.+.|...+ ..+....+..+.. .+.|.+.+... .++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~---TG~L~~~~F~e-smSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE---TGKLMFKNFQE-SMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc---CceEEeecccc-ccCCceEEEEEEEe
Confidence 46788998764 4455555555543 23599999999 99999999987654
No 412
>PHA03042 CD47-like protein; Provisional
Probab=79.24 E-value=13 Score=34.34 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCC
Q psy7039 129 GQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208 (516)
Q Consensus 129 g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 208 (516)
.+++.+.|...+--.+ .-....+.|..++..+-.-+. ...++|.+.... .=.
T Consensus 31 N~TV~IpC~v~n~~~~---------------------ni~~~~V~Wkf~~~~If~~n~------tn~aSL~~~f~~-~l~ 82 (286)
T PHA03042 31 NKTIVIVCNLNLLIYY---------------------NISNIHINWKFNNKVIFKKNN------TNTSSLKFNFSK-NLS 82 (286)
T ss_pred CceEEEEeecCChhhc---------------------CccceEEEEEeCCeeEEEecC------CcceEEEEeccc-cCC
Confidence 5788999998710000 114567999998877642211 122345554433 347
Q ss_pred eeEEEEEEcCCCc
Q psy7039 209 GHYSLTLENNLGT 221 (516)
Q Consensus 209 g~Y~c~~~~~~g~ 221 (516)
|+|+|.+.+...+
T Consensus 83 GNYTCEv~~l~n~ 95 (286)
T PHA03042 83 GNYTCEAINKFNK 95 (286)
T ss_pred CceeEEEeecccC
Confidence 9999999875443
No 413
>KOG4152|consensus
Probab=78.27 E-value=3.9 Score=41.05 Aligned_cols=69 Identities=26% Similarity=0.442 Sum_probs=47.2
Q ss_pred cCceecCCceEEEEEEEcCCCceeEEEEEEEe----cCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEE
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVV----DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~----~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v 487 (516)
..+.. ..+|.|++.|.|..|....+..+..+ ..|..| ...+++. +-+.+.|.|+||...+.+.|..|..
T Consensus 652 ~~lv~-Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~ap-S~~ri~k-~~eGi~l~weppt~p~sg~Iieys~ 724 (830)
T KOG4152|consen 652 TSLVT-GQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAP-SGARIKK-TIEGISLVWEPPTKPGSGTIIEYSP 724 (830)
T ss_pred ccccc-ccceeeeeeeeeccCCCchhhheeeeeccCCCCCCc-ccccccc-cccceeecccCCCCCCCcceEEeeh
Confidence 45566 88999999999999987665444443 345555 3444443 4578999999987666666666654
No 414
>PLN02533 probable purple acid phosphatase
Probab=76.05 E-value=13 Score=37.79 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=44.4
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeE-E----------eecCCcEEEeCCCcC
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAV-V----------VPAGETSCTVPGLIE 79 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~-~----------~~~~~~~~~i~~l~~ 79 (516)
..|..|..+++.-.+.+++.|+|.... ...+ .|+|-...+ ...... . .++-....+|.+|+|
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~--~~~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQD--SIPP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCC--CCCC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 345678888888777889999999842 2222 255543322 111111 0 011224579999999
Q ss_pred CCeEEEEEE
Q psy7039 80 GETYQFQVR 88 (516)
Q Consensus 80 ~~~y~~~~~ 88 (516)
++.|.|+|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999993
No 415
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=74.65 E-value=30 Score=37.41 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=37.6
Q ss_pred CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCcc
Q psy7039 58 NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116 (516)
Q Consensus 58 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~ 116 (516)
.|.....+ ....+.+.++-+ ..|..+++|.|..|....-..+....+..+..||.+
T Consensus 650 ~~vta~rt--~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~ 705 (952)
T COG4733 650 NWITAPRT--SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPK 705 (952)
T ss_pred ceEecccc--cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCc
Confidence 56555544 678899999888 599999999999987654333444444444444433
No 416
>PHA03273 envelope glycoprotein C; Provisional
Probab=73.13 E-value=1.1e+02 Score=30.90 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=47.0
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
..|.|..++..++|.|.-...+..+.......+.+.. .....+.+|+.|...|.+-+---.....+.|+.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4699999999999999877656555433333333332 244567789999999998443323344677854
No 417
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=72.88 E-value=9.3 Score=26.87 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCeEEeEEeecCCc-EEEeCCCcCCCeEEEEEEEecCCCCCC
Q psy7039 48 YVVEMKDKTGNWEKAVVVPAGET-SCTVPGLIEGETYQFQVRAVNAAGPGE 97 (516)
Q Consensus 48 Y~v~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~y~~~~~a~n~~g~~~ 97 (516)
|+-++...++.|.... ... .+.+.+|.+| .|.++|+|.+..|...
T Consensus 10 Y~Y~l~g~d~~W~~~~----~~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 10 YRYRLEGFDDEWITLG----SYSNSISYTNLPPG-KYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEEETTESSEEEES----STS-EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred EEEEEECCCCeEEECC----CCcEEEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence 4433444445787653 333 8999999877 8999999998776543
No 418
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=72.50 E-value=13 Score=41.01 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=49.9
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC----CeEEeEEe---------ecCCcEE--EeCC
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG----NWEKAVVV---------PAGETSC--TVPG 76 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~----~~~~~~~~---------~~~~~~~--~i~~ 76 (516)
+|+.-.+|++. .....|.|+|++|..| +.+....|.|++...-. .+.....+ ++....| ...+
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~ 833 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEG 833 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCc
Confidence 67788899885 5677799999999642 33568899999875311 12211111 1222233 3334
Q ss_pred Cc--CCCeEEEEEEEecCCCC
Q psy7039 77 LI--EGETYQFQVRAVNAAGP 95 (516)
Q Consensus 77 l~--~~~~y~~~~~a~n~~g~ 95 (516)
.. .++.+.|-++|.+..|.
T Consensus 834 ~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 834 IPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred ccccCCeEEEEEEEEEccccc
Confidence 32 45577888888776653
No 419
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=69.73 E-value=18 Score=28.42 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=29.9
Q ss_pred EecceeeEEEccCCCCCceEEEEEEEecCCCcc-eeEEEEE
Q psy7039 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVV 314 (516)
Q Consensus 275 ~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~-~~~~l~v 314 (516)
....+..|.|..+++.|+|.|...+.+..|... ..+.+.|
T Consensus 66 F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 66 FTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp EETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 356778999999999999999999999988863 2344443
No 420
>PHA03282 envelope glycoprotein E; Provisional
Probab=69.70 E-value=1.3e+02 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.8
Q ss_pred eeeEEEccCCCCCceEEEEEEEec
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
+.+|.|.+++.+|+|.|+..+...
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred cceEEEeeccccCCceEEEEecCC
Confidence 667999999999999999997543
No 421
>KOG4367|consensus
Probab=69.30 E-value=8.5 Score=37.62 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=28.0
Q ss_pred ccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 462 ITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 462 ~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..+++++|.|+.|. ..+.+..||+++..+...+.
T Consensus 450 t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~ 483 (699)
T KOG4367|consen 450 THNNSATLSWKQPP-LSTVPADGYILELDDGNGGQ 483 (699)
T ss_pred ccCCceEEEeecCC-CCCCCCcceEEEeecCCCCc
Confidence 45689999999765 44688999999999987777
No 422
>PF14292 SusE: SusE outer membrane protein
Probab=68.69 E-value=52 Score=26.64 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=38.1
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEee-c--CCcEEEeC-----------CCcCCCeEEEEEEE
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-A--GETSCTVP-----------GLIEGETYQFQVRA 89 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~--~~~~~~i~-----------~l~~~~~y~~~~~a 89 (516)
.+..+++.|+++...+......|.|+....++.|....... . ...++.+. ++.++..+.+.++.
T Consensus 43 ~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l~~rV 120 (122)
T PF14292_consen 43 SDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTLYWRV 120 (122)
T ss_pred CCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEEEEEE
Confidence 44679999999853333245689999887554443332221 1 13455444 45677777766664
No 423
>PHA03283 envelope glycoprotein E; Provisional
Probab=68.50 E-value=1.4e+02 Score=30.60 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
.....|.|.+.+.+++|.|+....+..+.....+.+.|..
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4567899999999999999999998776334445556655
No 424
>KOG4597|consensus
Probab=68.47 E-value=5.3 Score=39.70 Aligned_cols=85 Identities=15% Similarity=0.049 Sum_probs=59.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEEC---Ceec--CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVN---GDEV--SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~---~~~l--~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+....+-.++...+.|-+.|.+.+.|.|.+- ++.+ ..+..+....-....+|.|-+... .++|-|+|.|.|..|
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq-~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQ-ADAGWYTCSARCGAG 281 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhh-cCCCceeeccccccc
Confidence 3445677889999999999999999999862 2211 111111111112335799999888 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
.....+.+.+.
T Consensus 282 ~~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 FLRRDVPCSSV 292 (560)
T ss_pred eeeccceeeee
Confidence 87776666553
No 425
>KOG3632|consensus
Probab=63.70 E-value=25 Score=38.54 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=58.2
Q ss_pred CCCCCCCCCcceEEEe-eeCCeeEEEecCCC-----CCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcC-CC
Q psy7039 9 NPFDEPGKPTDLEATD-WDKDHVDLQWTPPI-----SDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIE-GE 81 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~-~~~~~v~l~W~~p~-----~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~~ 81 (516)
-|.++|.||.++.+.. .....+.++|.+|. ..++..+++|-|+.. +..+..+..-....+.+.+..|+. -.
T Consensus 764 LpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyad--gqkv~Evafptagst~VelsQlq~~l~ 841 (1335)
T KOG3632|consen 764 LPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD--GQKVEEVAFPTAGSTKVELSQLQDGLY 841 (1335)
T ss_pred ccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeC--CceeeeeecccCCceEEEeeeehhhhe
Confidence 3579999999998873 45677999999975 334566889998755 324444444433445555555553 44
Q ss_pred eEEEEEEEecCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s 99 (516)
.+.+.++.....|++.-+
T Consensus 842 ~~~V~vRtms~~gesvds 859 (1335)
T KOG3632|consen 842 HGAVGVRTMSVPGESVDS 859 (1335)
T ss_pred ecceeEEecccCcccccc
Confidence 566777776666765433
No 426
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=63.43 E-value=46 Score=25.32 Aligned_cols=66 Identities=11% Similarity=0.218 Sum_probs=40.5
Q ss_pred cccEEEEcCCeEEEEEEEeee-----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGR-----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~-----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
++...+..|..++..|..... ....|.|..++..+. .+++... +...+.+++.++.. ...-.|-|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~i-n~~~SsVT~~~~~~-~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVI-NDTVSSVTLPNLNP-TGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEE-STTEEEEEESS--S-SEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHccee-CCeEEEEEEccCCC-CCceEEEEE
Confidence 345578999999999998522 334799999998554 3444443 34557888888765 333334443
No 427
>PHA03052 Hypothetical protein; Provisional
Probab=61.67 E-value=42 Score=23.84 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=28.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ 182 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~ 182 (516)
..+.+..|..++|.|.+. +-.+...+.+.|..|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~-----------------------lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVS-----------------------LRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEE-----------------------ecCCCcceEEEEEeCCcEEe
Confidence 567889999999999987 01133356788999988873
No 428
>KOG1948|consensus
Probab=60.59 E-value=2.2e+02 Score=31.32 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=48.9
Q ss_pred CCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccC
Q psy7039 40 DGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRS 119 (516)
Q Consensus 40 ~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~ 119 (516)
-+|.|..+-.++....+..-.....+...+..++|.+|.|+..|.+++.+.-.....+.+.+........-.. +.
T Consensus 916 LsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s~tv~vgneD-----v~ 990 (1165)
T KOG1948|consen 916 LSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRSFTVSVGNED-----VK 990 (1165)
T ss_pred ccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeeccCCCcccccCCceEEEEecccc-----cC
Confidence 3444555555555554431111222334577899999999999999998763222222222221111100000 12
Q ss_pred cccceEEecCCeEEEEEeee
Q psy7039 120 TLNDVKIKAGQSFSFDVKEF 139 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~ 139 (516)
...-+....-....|.|.+.
T Consensus 991 glnf~af~q~kttdit~~V~ 1010 (1165)
T KOG1948|consen 991 GLNFMAFIQAKTTDITVEVG 1010 (1165)
T ss_pred CceEEEEeccceEEEEEEEc
Confidence 33334455556677888776
No 429
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=60.11 E-value=68 Score=24.17 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=35.6
Q ss_pred eEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 372 ~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
...|.+.+.+. ...+.|+.|+..+...... ..+.+ .+ ...|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~-~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QP-DRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CC-CCCeeEEEEEEcCCCCEEE
Confidence 45566666665 4489999999887322211 12222 22 4679999999888887543
No 430
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.14 E-value=1.4e+02 Score=30.12 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEe
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKN 301 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n 301 (516)
..-.|.+.|....++|.|.|.+.-
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred CccceEecCCCcccCceEEEEEEE
Confidence 344899999999999999999874
No 431
>PHA03052 Hypothetical protein; Provisional
Probab=57.83 E-value=37 Score=24.13 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=26.5
Q ss_pred ccEEEEcCCeEEEEEEEee---ecCCceEEEECCeec
Q psy7039 363 RDMTVLAGEEFTITVPFSG---RPKPTPIWTVNGDEV 396 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g---~p~~~i~W~~~~~~l 396 (516)
..+.+..|.++++.|.+.- .....+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 5678899999999999952 233478999888766
No 432
>PHA03283 envelope glycoprotein E; Provisional
Probab=53.08 E-value=2.8e+02 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.3
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
...+.|.|.+++.+++|.|+...++..+
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~ 158 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGM 158 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCc
Confidence 3457899999999999999999998666
No 433
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=52.77 E-value=95 Score=23.93 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=29.9
Q ss_pred EEEEEEccCCCCCceecccccccceEEEEE-ecce------eeEEEccCCCCCceEEEEEEEec
Q psy7039 246 YRVSAVNAAGTEKPKISLDALIGKRIKEFV-TSTT------ASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 246 ~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~-~~~~------~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
-+|.+ ..|.|+..|+|............ ...+ ..+.+......+.-..+|.+...
T Consensus 25 A~CiS--a~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 25 ATCVS--ANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEc--CCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 34543 58999999999764333222211 1111 23333444555566777777654
No 434
>KOG4806|consensus
Probab=51.73 E-value=2.4e+02 Score=27.44 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=45.3
Q ss_pred CceecCCceEEEEEEEcCCCce-----eEEEEEEEecCCCCCCCCccccc--ccCCeEEEEeeCCCCCCCCCcceEEEEE
Q psy7039 417 SAKRATDSGSYTIQLVNTVGSD-----SASCKVYVVDKPSPPQGPLDVSD--ITPESCSLSWKPPLDDGGSPITNYVVEK 489 (516)
Q Consensus 417 ~~~~~~~~g~y~c~a~n~~G~~-----s~s~~l~v~~~p~~P~~~l~~~~--~~~~~~~l~W~~p~~~~~~~i~~Y~v~~ 489 (516)
.+.. ...|.|+....|..-.. -.+...+..+-|..| .+-++.. .+-+++++.|.-..+. -..|.|..
T Consensus 290 vv~~-~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP-~dTtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy~ 363 (454)
T KOG4806|consen 290 VVLP-GERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELP-QDTTVKNVRRRCSSATIAWNGSPDE----ELKYCIYV 363 (454)
T ss_pred EecC-CCceEEEEEecCCchhhheeEeeeecccccCcCCCCC-CCceEeeeccccchheeeeccCcch----heeEEEEE
Confidence 3445 77888998888875432 223334444567777 5555444 4457999999753322 33488888
Q ss_pred EecCCCc
Q psy7039 490 YESATGV 496 (516)
Q Consensus 490 ~~~~~~~ 496 (516)
++.....
T Consensus 364 ~~~~~~e 370 (454)
T KOG4806|consen 364 FNLPQRE 370 (454)
T ss_pred ecccchh
Confidence 7776533
No 435
>PHA03286 envelope glycoprotein E; Provisional
Probab=51.72 E-value=2.7e+02 Score=28.11 Aligned_cols=35 Identities=26% Similarity=0.173 Sum_probs=28.3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
....+.|.|.+++.+++|.|+...+|..|......
T Consensus 123 t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~v 157 (492)
T PHA03286 123 TGRGKELTILNASSQNAGIYIRYSRNGTRTAVMDV 157 (492)
T ss_pred cCCCCceEEeeccccccceEEEEEcCCCCcEEEEE
Confidence 34457899999999999999999998877655443
No 436
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=51.32 E-value=99 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEcCceecCCceEEEEEE-EcCCCceeEEEEEEE
Q psy7039 413 YRNKSAKRATDSGSYTIQL-VNTVGSDSASCKVYV 446 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a-~n~~G~~s~s~~l~v 446 (516)
........ .|+|.+.|.| .+..-.......+.|
T Consensus 45 ~~~~~~~~-~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTT-EDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTC-GGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCC-CCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 34446666 8999999999 444444444444433
No 437
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=48.65 E-value=2.6e+02 Score=27.05 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
..|..-.++++.....+.+.|+|..+.. +..|+|+..+.+. ....+..+ ..+++.-.....+..+.|.+.++
T Consensus 163 ~~P~ei~~~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~e~~~~ia~t--~~n~y~d~~eglga~~~y~VTtV 235 (343)
T COG3401 163 AEPKEITNVRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGNEEYGFIAQT--TENSYYDVKEGLGAVEYYKVTTV 235 (343)
T ss_pred cCCceeeeeeeecCCCCcceeeccCccc-----cceEEEeccCCccccccceeec--cccchhhhhhccCceeEEEEEEE
Confidence 3444444445555567789999988532 2267887666555 44444444 34444433334588888888887
Q ss_pred cCCC
Q psy7039 91 NAAG 94 (516)
Q Consensus 91 n~~g 94 (516)
...+
T Consensus 236 d~~~ 239 (343)
T COG3401 236 DNTG 239 (343)
T ss_pred cCCc
Confidence 6443
No 438
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=46.08 E-value=2.8e+02 Score=26.61 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAA 93 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~ 93 (516)
..+.++|.+|.|++.|.|.+.|+|..
T Consensus 13 ~~t~~t~~~L~p~t~YyfdVF~vn~~ 38 (300)
T PF10179_consen 13 QKTNQTLSGLKPDTTYYFDVFVVNQL 38 (300)
T ss_pred CCceEEeccCCCCCeEEEEEEEEECC
Confidence 46889999999999999999999974
No 439
>KOG4228|consensus
Probab=42.36 E-value=49 Score=37.08 Aligned_cols=48 Identities=21% Similarity=0.040 Sum_probs=33.7
Q ss_pred EEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCC
Q psy7039 294 IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342 (516)
Q Consensus 294 ~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p 342 (516)
.|+|.+....+.......+.|..-|..+.. ..++......+.+.|..+
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~-~~vt~~~~~~~~~~~~~~ 48 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPST-PNVTGSTATSWVQAELLG 48 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCC-cccccccccceeehhhcc
Confidence 489999988888888888888776665544 555555666666666543
No 440
>KOG4152|consensus
Probab=39.66 E-value=4.5e+02 Score=27.16 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=47.5
Q ss_pred ccCCCCCceEEEEEEEecCCCcceeEEEE-EecCCCCCCCCceee-eccCCeeEEEecCCCCCCCCceeec
Q psy7039 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVV-VVSKPGPPTGPIDYT-TVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~g~~~~~~~l~-v~~~p~~p~~p~~~~-~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
..+-.+.+|.+.+.+.|..|....+..+. +...|..|..|..+. ..+..-+.+.|++|...+...|..|
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~~eGi~l~weppt~p~sg~Iiey 722 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKTIEGISLVWEPPTKPGSGTIIEY 722 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccccccceeecccCCCCCCCcceEEe
Confidence 34667788999999999988765543333 233455555543332 2366788999999999887778877
No 441
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=38.43 E-value=56 Score=33.26 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=0.0
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
.+.|.|.+++.+|+|.|+...++..+..
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~ 115 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWA 115 (439)
T ss_dssp ----------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCce
Confidence 4679999999999999999998766554
No 442
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=37.94 E-value=1.8e+02 Score=22.21 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=47.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.++...+..|..+.+.|...-..+..+.|... -.+..+....+-..+.+.++.. .....|.+.=.......
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~---ds~~~C~~~C~g~Q~~~ 79 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE---DSSPLCFFNCSGEQSSA 79 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S---CEEEEEEEEETTEEEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc---CCeEEEEEEcCCeEEEe
Confidence 45677899999999999984222223444311 1112222223445677777753 46788987644334677
Q ss_pred EEEEEEecCCC
Q psy7039 441 SCKVYVVDKPS 451 (516)
Q Consensus 441 s~~l~v~~~p~ 451 (516)
++.|+|...|.
T Consensus 80 ~~~ItVY~~Pe 90 (91)
T PF03921_consen 80 SANITVYKPPE 90 (91)
T ss_dssp EEEEEEEB--S
T ss_pred EEeeEEeCCCC
Confidence 88899887653
No 443
>COG3979 Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
Probab=37.56 E-value=1e+02 Score=27.08 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=65.2
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecC
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA 92 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~ 92 (516)
.|..+..+....+...++.+.|... ....++..|. +.. .|... .........++.+|.+..+|.|.+.+...
T Consensus 4 ~~~a~~~~~~~~~~~~s~~~~~~s~--~~~~~~~~~p--~~~---~~d~~-~~~t~~~~~~~~g~~~et~y~~~~~a~~t 75 (181)
T COG3979 4 APPAPKSLMLTNVTTTSASLAASSS--SDNKASDTYP--YVY---AWDPK-TVYTTGTVVTVEGLAPETEYWTLVEAPDT 75 (181)
T ss_pred cCcCccceeecchhhhhhhhccccc--cccccccCCC--ccc---ccCcc-ceecccceEEecCcceeeEEEEeeeccCC
Confidence 4556677777888889999999884 2334566666 111 11111 11235677899999999999999999776
Q ss_pred CCCCCCCCCCcceEeccCC---CCCccccCcccceEEecCCeEEEEE
Q psy7039 93 AGPGEASKPTAPIVAKPKN---LAPRIDRSTLNDVKIKAGQSFSFDV 136 (516)
Q Consensus 93 ~g~~~~s~~~~~~~~~~~~---~~p~~~~~~~~~~~v~~g~~~~l~C 136 (516)
.|. .+.....+...... ..+... ....+..+..|+.+.+.-
T Consensus 76 ~g~--~s~~~~~~~~~~~~~~~~~~s~p-~~~~~~~~~~gd~vt~~g 119 (181)
T COG3979 76 SGN--WSAWSRLLTVSTSGCGDGSPSAP-AWVKNGVYVVGDVVTYTG 119 (181)
T ss_pred CCc--cccceeeeeeccCcCCCCCcCcc-chhhcCcccccceEEecC
Confidence 554 23333333322221 111111 233445556666666543
No 444
>PHA03112 IL-18 binding protein; Provisional
Probab=37.56 E-value=1.4e+02 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=20.5
Q ss_pred EEcCCeEEEEEEEeee-cCC-ceEEEECC
Q psy7039 367 VLAGEEFTITVPFSGR-PKP-TPIWTVNG 393 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-p~~-~i~W~~~~ 393 (516)
...++++.|.|.+.+. |.. -+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3568899999999866 443 68999665
No 445
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=37.46 E-value=1.8e+02 Score=21.86 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=28.5
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+. ...+.|+-|+..+..... ...+.+ .....|.|+..+....|...
T Consensus 40 ~~-~~~~~W~vdg~~~g~~~~--------~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 40 GG-RGPVYWFVDGEPLGTTQP--------GHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred CC-CCcEEEEECCEEcccCCC--------CCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 44 449999999998832211 112222 23567889888887777654
No 446
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=36.66 E-value=1.8e+02 Score=21.62 Aligned_cols=38 Identities=11% Similarity=-0.016 Sum_probs=25.7
Q ss_pred ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEE
Q psy7039 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLE 216 (516)
Q Consensus 169 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~ 216 (516)
.+.+.|+.++...... ...+........|+|.+.|.+.
T Consensus 26 ~~~~~l~~~~~k~~~~----------~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLET----------KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEEE----------SSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCcccccc----------ceEEEEecCCCCCCEEEEEEEc
Confidence 4566677665544322 2345667778899999999994
No 447
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=34.48 E-value=1.7e+02 Score=28.47 Aligned_cols=9 Identities=0% Similarity=-0.389 Sum_probs=7.8
Q ss_pred eEEEEEeee
Q psy7039 131 SFSFDVKEF 139 (516)
Q Consensus 131 ~~~l~C~~~ 139 (516)
.+.|+|.+.
T Consensus 216 ~~tL~C~A~ 224 (338)
T PHA02865 216 NTTLFCTFD 224 (338)
T ss_pred CceEEEEEE
Confidence 479999999
No 448
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=33.81 E-value=1.2e+02 Score=29.60 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=17.5
Q ss_pred eEEEEEEEeeecCC--ceEEEEC
Q psy7039 372 EFTITVPFSGRPKP--TPIWTVN 392 (516)
Q Consensus 372 ~~~l~C~~~g~p~~--~i~W~~~ 392 (516)
.++|.|.+.|--+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57899999997655 6789999
No 449
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=33.41 E-value=1.2e+02 Score=22.21 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.2
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
+..++|.=.+|..+..|.|++.|.-
T Consensus 26 G~~R~F~T~~L~~G~~y~Y~v~a~~ 50 (75)
T TIGR03000 26 GTVRTFTTPPLEAGKEYEYTVTAEY 50 (75)
T ss_pred ccEEEEECCCCCCCCEEEEEEEEEE
Confidence 3567888899999999999999854
No 450
>PHA03189 UL14 tegument protein; Provisional
Probab=32.09 E-value=4.6e+02 Score=25.05 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=14.2
Q ss_pred ceEEecCCeEEEEEeee
Q psy7039 123 DVKIKAGQSFSFDVKEF 139 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~ 139 (516)
.+-+..|+.+++.|.+.
T Consensus 61 P~l~pyGdrvtVpC~fp 77 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFP 77 (348)
T ss_pred ccccCCCceeeeeeeec
Confidence 35567899999999987
No 451
>PHA03286 envelope glycoprotein E; Provisional
Probab=31.82 E-value=5e+02 Score=26.33 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=30.6
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcce-eEEEEEe
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVV 315 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~ 315 (516)
......|.|.+.+.+.+|.|+....|..|.... .+-+.|.
T Consensus 123 t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 123 TGRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred cCCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 345578999999999999999999987766543 4455554
No 452
>PHA03189 UL14 tegument protein; Provisional
Probab=31.79 E-value=4.4e+02 Score=25.13 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=39.2
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC--ceE-----EEE----------CCeecCCC-------CceEEEEcCCeEEEEEc-C
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP--TPI-----WTV----------NGDEVSPD-------GRIKFETSENQTIYRNK-S 417 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~--~i~-----W~~----------~~~~l~~~-------~~~~~~~~~~~~~l~i~-~ 417 (516)
...-+..|+.+++.|.+....=| .|. |.. .|..+.++ .+..+...+-...|++. +
T Consensus 60 AP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~ 139 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFR 139 (348)
T ss_pred CccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEE
Confidence 34567899999999998544322 221 211 12222221 12222222222233332 4
Q ss_pred ceecCCceEEEEEEEcCC
Q psy7039 418 AKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~ 435 (516)
+.. +.+|.|.|...|..
T Consensus 140 v~t-~taG~Y~CvLrN~t 156 (348)
T PHA03189 140 VST-STAGMYECVLRNET 156 (348)
T ss_pred EEe-cccceEEEEecccc
Confidence 566 89999999999975
No 453
>PHA03281 envelope glycoprotein E; Provisional
Probab=31.45 E-value=5.5e+02 Score=26.76 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEE-------------------------EeeceeeeeccccCCceEEEEEEE
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASA-------------------------HVTGTEFTDNNVHEGKAYEYRVSA 250 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~-------------------------~~~~~~~~~~~l~~g~~~~~~~~~ 250 (516)
+.|.|.+++..++|.|+...+...|...... ......|...-..+|+.+.+.+..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Q ss_pred Ecc--CCCCCceecccc-cccceEEEEE----------------------------------------------------
Q psy7039 251 VNA--AGTEKPKISLDA-LIGKRIKEFV---------------------------------------------------- 275 (516)
Q Consensus 251 ~~~--~g~p~p~i~W~~-~~~~~~~~~~---------------------------------------------------- 275 (516)
... .+.-...+.|.. ..........
T Consensus 378 ~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~~~wp~~C~ 457 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHENAPQCLSHENPECTFASPHIAQRVANTVYQNCEHADNYTADCL 457 (642)
T ss_pred eeeccCCCceeEEEEEEecCCCCCceEEeecccccCCCchhhcCcCCCCcccccchhHHHHHHHHhcCCCCCCCCCCCCC
Q ss_pred -------------ecceeeEEEccCCCCCceEEEEEEE
Q psy7039 276 -------------TSTTASLNIKNSVRKDSGIYKIEAK 300 (516)
Q Consensus 276 -------------~~~~~~l~i~~l~~~d~g~y~c~a~ 300 (516)
......|.+.+....++|.|.|.+.
T Consensus 458 sis~m~p~~gL~~~~n~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 458 AISHMEPGFGLEIHDGGSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred cccccCccccccccCCCcceEeccCCcccCceEEEEEE
No 454
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=30.94 E-value=79 Score=24.79 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=26.2
Q ss_pred CCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 455 GPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 455 ~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.++++... +-...|.|+++.. ..+-..|.|+|+....+.
T Consensus 26 ~nv~~~s~-nf~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~ 64 (107)
T PF01108_consen 26 QNVTVDSV-NFKHILRWDPGPG--SPPNVTYTVQYKKYGSSS 64 (107)
T ss_dssp EEEEEEEE-TTEEEEEEEESTT--SSSTEEEEEEEEESSTSC
T ss_pred CeeEEEEE-CCceEEEeCCCCC--CCCCeEEEEEEEecCCcc
Confidence 67776653 5568999998432 335667999999444444
No 455
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=28.55 E-value=7.8e+02 Score=26.65 Aligned_cols=92 Identities=8% Similarity=-0.057 Sum_probs=45.8
Q ss_pred eeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCC-cceEeccCCCCCccc-cCccc
Q psy7039 45 ITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT-APIVAKPKNLAPRID-RSTLN 122 (516)
Q Consensus 45 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~-~~~~~~~~~~~p~~~-~~~~~ 122 (516)
-.-|+.-....++.|...... ....++..... ....|.+.|.+.........-... +...+ .+..++.|. +..-.
T Consensus 222 ~~LYKF~~i~~~G~~~~~qdY-st~n~~~y~~~-~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~V-k~~~~vkI~~~~~d~ 298 (667)
T PRK14081 222 TILYKFVKIDSDGKQTCIQDY-STKNIVSYKEK-KSGDYKLLCLVKDMYSNNEFDDRAVLVYTV-KPYKDIKIRNFTTDL 298 (667)
T ss_pred eEEEEEEEECCCCCEEEecCc-cccceEEEEeC-CCccEEEEEEEeccCcccccccceEEEEEE-ecCCCcEEEEEEEcC
Confidence 344544332334456654433 34555555543 344788888887765544432222 22222 122233332 11111
Q ss_pred ceEEecCCeEEEEEeee
Q psy7039 123 DVKIKAGQSFSFDVKEF 139 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~ 139 (516)
+-.+..|+.+.|.+.+.
T Consensus 299 ~s~ql~g~~I~ika~a~ 315 (667)
T PRK14081 299 SSPQLTDTDIELKAVAE 315 (667)
T ss_pred CCCeecCceEEEEEEec
Confidence 12235788999999998
No 456
>PF14292 SusE: SusE outer membrane protein
Probab=27.12 E-value=2.4e+02 Score=22.66 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=23.3
Q ss_pred ccCCeEEEEeeCCCCCCCCCcceEEEEEEecCC
Q psy7039 462 ITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494 (516)
Q Consensus 462 ~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~ 494 (516)
...+.+++.|+++.+........|.|+....+.
T Consensus 42 ~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~ 74 (122)
T PF14292_consen 42 ASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGN 74 (122)
T ss_pred cCCceEEEEEECCccCCCCCceEEEEEEeccCC
Confidence 345689999998865444245569999887654
No 457
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=26.63 E-value=3.7e+02 Score=22.25 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=13.8
Q ss_pred EEecCCeEEEEEeeeecccc
Q psy7039 125 KIKAGQSFSFDVKEFRELSY 144 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~ 144 (516)
.+..|+++.++|...++..|
T Consensus 43 ~I~~GeTvEIR~~l~reG~y 62 (137)
T PF12988_consen 43 KIKKGETVEIRCELKREGNY 62 (137)
T ss_dssp S--TTEEEEEEEEEEESS--
T ss_pred ccCCCCEEEEEEEEecCcee
Confidence 35689999999999866666
No 458
>KOG1026|consensus
Probab=26.39 E-value=91 Score=33.90 Aligned_cols=159 Identities=11% Similarity=0.083 Sum_probs=84.2
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEec
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIP 201 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~ 201 (516)
...+..|..+++.|... +.|.+.+.|+............ .+.. .....+.
T Consensus 201 ~~~v~~~~~~~~~c~~~--------------------------~~~vp~~~~~~~~~~~~~~~~~~~~c~---~~~~~~~ 251 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQA--------------------------GIPVPCHYWFPNCLASSNTNQTSSLCR---SECEVLE 251 (774)
T ss_pred hhhhcccchheeeeecc--------------------------cCCCcceeeecccccccCCCccccccc---ccceeee
Confidence 35577889999999999 9999999999876554432111 1110 1111111
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEccCCCCCceecccccc-cceEEE----EE
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-GKRIKE----FV 275 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~~~~~~----~~ 275 (516)
.+.|.++|..|....++.....-. -...+..-....-.|...-..+.+.+...|-... +-...- ..
T Consensus 252 --------~~~c~~E~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~ 323 (774)
T KOG1026|consen 252 --------NDLCIAENAVARSNPSILLVVDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTK 323 (774)
T ss_pred --------chhhHHHHhhhhcCceeeeEEecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEeccccccc
Confidence 178888887777665443222111 1111111112233444433345666666663211 100000 00
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.+...-+........+.|.|+|.+.+..|.........+...|
T Consensus 324 s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 324 SGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred ccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 0100112222235667899999999998887776666666665
No 459
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=23.93 E-value=1.4e+02 Score=22.99 Aligned_cols=51 Identities=4% Similarity=-0.089 Sum_probs=25.1
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecC---CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTK---SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
|.|+.+|+|..+-..-.+. ...-..++ ..+.+.+-.....|.-..+|.+..
T Consensus 32 GrPpa~ItW~t~l~G~~et-q~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h 85 (98)
T cd05890 32 GKPPSVVRWDTRLKGEAEF-QEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNY 85 (98)
T ss_pred CcCCcEeEEEccCCCceee-eeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEe
Confidence 9999999998632110000 00000011 123444445555566667777765
No 460
>KOG1378|consensus
Probab=23.73 E-value=3e+02 Score=28.04 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=40.5
Q ss_pred CCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEe-----CCC---CeEEeE----EeecCCcEEEeCCCcCC
Q psy7039 14 PGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKD-----KTG---NWEKAV----VVPAGETSCTVPGLIEG 80 (516)
Q Consensus 14 p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~-----~~~---~~~~~~----~~~~~~~~~~i~~l~~~ 80 (516)
...|..++++-.... .+.++|..+. ....+..|-..... ..+ .|.... ...+-....+|.+|.++
T Consensus 42 ~~~peQvhlS~~~~~~~m~VswvT~~--~~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~ 119 (452)
T KOG1378|consen 42 VNSPEQVHLSFTDNLNEMRVSWVTGD--GEENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPN 119 (452)
T ss_pred CCCCCeEEEeccCCCCcEEEEEeCCC--CCCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCC
Confidence 356777777644333 8999998852 22234445422111 011 121111 11122345688899999
Q ss_pred CeEEEEEE
Q psy7039 81 ETYQFQVR 88 (516)
Q Consensus 81 ~~y~~~~~ 88 (516)
+.|.|+|=
T Consensus 120 t~YyY~~G 127 (452)
T KOG1378|consen 120 TRYYYQVG 127 (452)
T ss_pred ceEEEEeC
Confidence 99999993
No 461
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.39 E-value=1.3e+02 Score=30.59 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=0.0
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCCcce-eEEEEEec
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVS 316 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~ 316 (516)
...+.|.|.+++.+++|.|+....+..+.... .+.+.|..
T Consensus 86 ~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 86 FNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp -----------------------------------------
T ss_pred ecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 44578999999999999999999877665433 34555544
No 462
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=21.33 E-value=3e+02 Score=19.23 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=18.7
Q ss_pred EEEcCCeEEEEEEEeeecCCceEEEECC
Q psy7039 366 TVLAGEEFTITVPFSGRPKPTPIWTVNG 393 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~~~i~W~~~~ 393 (516)
.+..|+.+.|...........+.|...+
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGD 34 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECC
Confidence 4567888888877733334478898877
No 463
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=20.12 E-value=5.5e+02 Score=21.89 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.3
Q ss_pred ccccCCceEEEEEEEEccCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~ 256 (516)
..+..++.|.+.+.|.+..|.
T Consensus 117 psle~~~~YtLtV~a~D~aGN 137 (158)
T PF13750_consen 117 PSLEADDSYTLTVSATDKAGN 137 (158)
T ss_pred CCcCCCCeEEEEEEEEecCCC
Confidence 356788999999999888876
Done!