Query psy7039
Match_columns 516
No_of_seqs 234 out of 2618
Neff 10.0
Searched_HMMs 29240
Date Sat Aug 17 01:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 4.9E-34 1.7E-38 300.5 38.2 334 68-473 155-501 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 2.6E-33 8.9E-38 295.0 39.0 335 68-473 59-408 (570)
3 2jll_A NCAM2, neural cell adhe 100.0 4.2E-31 1.4E-35 264.5 35.1 306 121-496 7-337 (389)
4 2rik_A Titin; I-SET IG fold, p 100.0 5.6E-30 1.9E-34 244.8 33.1 267 112-447 4-283 (284)
5 3kld_A Contactin 4, axcam, BIG 100.0 3.9E-30 1.3E-34 257.2 24.6 302 69-448 61-383 (384)
6 3laf_A Deleted in colorectal c 100.0 1.3E-29 4.4E-34 254.9 21.6 303 68-449 75-402 (403)
7 1cs6_A Axonin-1; neural cell a 100.0 1.4E-29 4.6E-34 253.0 20.5 300 69-447 60-381 (382)
8 2ocw_A Polymeric-immunoglobuli 100.0 1.2E-26 4.3E-31 244.9 39.9 330 69-474 74-467 (585)
9 1e07_A Carcinoembryonic antige 100.0 2.9E-27 1E-31 252.6 34.9 319 27-447 304-639 (642)
10 2ec8_A MAST/stem cell growth f 100.0 1.2E-27 4.2E-32 249.2 28.2 334 25-450 49-413 (524)
11 1bih_A Hemolin; insect immunit 100.0 3.5E-28 1.2E-32 243.7 23.0 297 68-446 60-394 (395)
12 2v5m_A Dscam; neurobiology SPL 100.0 6.3E-28 2.2E-32 241.3 23.1 292 68-446 57-387 (388)
13 3p3y_A Neurofascin; IG domains 100.0 2.2E-28 7.4E-33 245.9 19.4 302 69-448 72-403 (404)
14 1e07_A Carcinoembryonic antige 100.0 1.1E-25 3.9E-30 240.3 40.4 359 12-453 11-384 (642)
15 3dmk_A DOWN syndrome cell adhe 100.0 6E-27 2.1E-31 257.1 30.1 331 68-472 387-737 (816)
16 2y25_A Myomesin; structural pr 100.0 4.3E-27 1.5E-31 228.3 24.1 275 112-448 6-315 (317)
17 2ec8_A MAST/stem cell growth f 100.0 1.3E-27 4.5E-32 249.0 20.4 309 68-452 166-514 (524)
18 3dmk_A DOWN syndrome cell adhe 100.0 2.6E-26 9E-31 252.0 31.0 350 25-451 151-529 (816)
19 2rcj_C Light chain; immunoglob 100.0 4.4E-26 1.5E-30 237.4 30.6 309 68-445 68-417 (523)
20 2wim_A N-CAM 2, NCAM2, neural 100.0 1.7E-26 5.7E-31 221.4 24.0 264 113-449 4-285 (291)
21 1z7z_I Intercellular adhesion 99.9 4E-26 1.4E-30 233.1 27.6 327 26-448 100-449 (450)
22 2yd9_A Receptor-type tyrosine- 99.9 1.1E-26 3.6E-31 224.5 22.1 266 112-451 5-294 (304)
23 2nzi_A Titin; IG-domain, FNIII 99.9 4.1E-26 1.4E-30 220.3 25.8 261 112-441 3-283 (305)
24 2ocw_A Polymeric-immunoglobuli 99.9 6.2E-25 2.1E-29 231.9 37.0 299 71-450 186-548 (585)
25 3qs9_E FL cytokine receptor; i 99.9 1.4E-26 4.9E-31 240.1 23.2 297 70-450 103-416 (527)
26 1qz1_A Neural cell adhesion mo 99.9 4.4E-26 1.5E-30 218.4 23.3 267 114-448 3-290 (291)
27 3qs7_E FL cytokine receptor; i 99.9 1.7E-26 6E-31 233.1 20.6 296 70-453 103-419 (423)
28 3qs7_E FL cytokine receptor; i 99.9 4.9E-25 1.7E-29 222.5 26.5 297 79-450 4-325 (423)
29 3qs9_E FL cytokine receptor; i 99.9 6.1E-26 2.1E-30 235.3 18.9 288 76-448 197-510 (527)
30 2y23_A Myomesin; structural pr 99.9 1.5E-24 5E-29 209.9 25.8 271 122-447 9-311 (312)
31 1ry7_B FGFR-3, fibroblast grow 99.9 1.8E-26 6.2E-31 225.9 11.9 266 119-452 13-331 (334)
32 1wio_A CD4, T-cell surface gly 99.9 2.5E-25 8.4E-30 220.6 18.8 273 123-474 3-320 (363)
33 1qgc_4 Protein (immunoglobulin 99.9 1.6E-25 5.6E-30 227.6 17.7 310 67-444 72-435 (438)
34 1bih_A Hemolin; insect immunit 99.9 2.4E-24 8E-29 215.8 23.1 302 111-473 4-333 (395)
35 1wio_A CD4, T-cell surface gly 99.9 1.8E-24 6.3E-29 214.3 21.5 262 68-447 65-362 (363)
36 2jll_A NCAM2, neural cell adhe 99.9 9.7E-23 3.3E-27 203.6 34.0 311 68-450 61-386 (389)
37 2o26_X MAST/stem cell growth f 99.9 3.4E-24 1.2E-28 205.3 21.3 258 112-450 11-290 (290)
38 3p3y_A Neurofascin; IG domains 99.9 1.7E-24 5.7E-29 217.5 19.7 304 109-472 12-335 (404)
39 1z7z_I Intercellular adhesion 99.9 5E-24 1.7E-28 217.4 23.2 292 70-452 50-371 (450)
40 1zlg_A Anosmin 1; insulin-like 99.9 1.2E-21 4E-26 209.7 40.0 419 11-495 157-674 (680)
41 3rjd_A High affinity immunoglo 99.9 1.9E-23 6.4E-28 196.8 21.9 246 114-446 2-260 (262)
42 2nzi_A Titin; IG-domain, FNIII 99.9 5.1E-23 1.8E-27 198.5 25.2 225 235-497 13-245 (305)
43 3laf_A Deleted in colorectal c 99.9 2E-23 6.7E-28 209.7 22.9 265 119-450 26-313 (403)
44 3ejj_X Macrophage colony-stimu 99.9 2.2E-23 7.6E-28 199.3 21.8 263 113-450 4-283 (289)
45 3kld_A Contactin 4, axcam, BIG 99.9 5.1E-24 1.7E-28 212.8 17.9 281 127-472 21-318 (384)
46 4fqp_A Poliovirus receptor; im 99.9 3E-23 1E-27 201.1 22.4 259 119-449 5-305 (313)
47 3oq3_B IFN-alpha/beta binding 99.9 2.7E-23 9.2E-28 203.0 21.8 253 120-446 35-328 (329)
48 3mjg_X Beta-type platelet-deri 99.9 3.4E-23 1.1E-27 198.2 21.7 256 120-453 6-283 (289)
49 4fom_A Poliovirus receptor-rel 99.9 1.4E-23 4.7E-28 202.9 18.9 259 123-451 8-303 (308)
50 1itb_B Type 1 interleukin-1 re 99.9 1.3E-24 4.5E-29 210.7 11.4 263 122-447 13-313 (315)
51 3u83_A Poliovirus receptor-rel 99.9 9.3E-24 3.2E-28 206.2 17.2 263 119-453 19-325 (331)
52 1cs6_A Axonin-1; neural cell a 99.9 2E-23 6.9E-28 208.1 19.2 289 113-472 4-317 (382)
53 2rcj_C Light chain; immunoglob 99.9 3.7E-22 1.3E-26 207.7 28.8 299 70-437 178-513 (523)
54 4dep_C Interleukin-1 receptor 99.9 3.4E-24 1.2E-28 211.1 12.6 269 119-448 12-333 (349)
55 2v5m_A Dscam; neurobiology SPL 99.9 2.2E-23 7.5E-28 208.3 18.7 294 113-473 3-331 (388)
56 3o4o_C Interleukin-1 receptor 99.9 2.7E-24 9.2E-29 210.9 8.3 278 113-446 18-333 (339)
57 3v2a_R Vascular endothelial gr 99.9 1.9E-25 6.5E-30 243.6 0.0 309 69-453 380-761 (772)
58 2oz4_A Intercellular adhesion 99.9 2.1E-22 7.1E-27 190.3 20.4 232 125-448 14-264 (265)
59 4dkd_C Macrophage colony-stimu 99.9 6.1E-23 2.1E-27 196.6 14.5 267 112-453 3-286 (292)
60 3v2a_R Vascular endothelial gr 99.9 1.4E-23 4.8E-28 228.8 11.3 314 68-451 181-552 (772)
61 1iga_A IGA1; immunoglobulin; N 99.9 8.4E-21 2.9E-25 195.0 30.4 304 68-438 78-444 (475)
62 2rik_A Titin; I-SET IG fold, p 99.9 3.3E-21 1.1E-25 183.8 24.9 213 68-315 59-283 (284)
63 2v5y_A Receptor-type tyrosine- 99.9 5.7E-21 2E-25 206.8 28.5 357 71-494 124-505 (731)
64 1hzh_H IGG, immunoglobulin hea 99.9 3.6E-21 1.2E-25 196.8 23.7 303 68-438 77-444 (457)
65 1fnf_A Fibronectin; RGD, extra 99.9 1.8E-19 6.1E-24 178.6 34.9 310 13-496 1-317 (368)
66 2wng_A Tyrosine-protein phosph 99.9 3.7E-21 1.3E-25 187.5 21.3 253 119-438 8-309 (327)
67 3t1w_A Four-domain fibronectin 99.9 2.4E-19 8.1E-24 178.2 33.5 313 13-494 2-317 (375)
68 3vh8_G Killer cell immunoglobu 99.9 1.7E-21 5.8E-26 189.0 16.5 262 112-450 23-315 (316)
69 1igt_B IGG2A intact antibody - 99.9 2.5E-21 8.7E-26 197.1 18.5 302 68-437 77-434 (444)
70 1qgc_4 Protein (immunoglobulin 99.9 1.1E-20 3.9E-25 191.7 21.7 287 119-473 6-367 (438)
71 2v5y_A Receptor-type tyrosine- 99.9 4.3E-19 1.5E-23 192.0 34.4 339 12-495 260-611 (731)
72 2j8h_A Titin, connectin; cardi 99.8 1.9E-19 6.3E-24 161.6 22.9 192 112-447 3-196 (197)
73 3lcy_A Titin; A-BAND, IG tande 99.8 2E-19 7E-24 161.1 22.7 190 112-448 6-196 (197)
74 1igy_B IGG1 intact antibody MA 99.8 1E-21 3.4E-26 199.5 7.8 300 68-437 76-424 (434)
75 2y25_A Myomesin; structural pr 99.8 1.9E-20 6.3E-25 181.4 15.3 222 68-316 59-315 (317)
76 1qz1_A Neural cell adhesion mo 99.8 2.2E-19 7.5E-24 171.6 21.7 213 68-316 60-290 (291)
77 2wim_A N-CAM 2, NCAM2, neural 99.8 1.8E-19 6.1E-24 172.3 20.6 211 68-318 58-286 (291)
78 2a38_A Titin; Z1Z2, structural 99.8 1.5E-19 5.2E-24 161.7 18.6 188 113-447 5-194 (194)
79 2y23_A Myomesin; structural pr 99.8 6.7E-19 2.3E-23 169.9 23.2 214 67-314 55-310 (312)
80 2yd9_A Receptor-type tyrosine- 99.8 1.7E-19 5.9E-24 173.7 18.1 216 69-320 62-295 (304)
81 3l5h_A Interleukin-6 receptor 99.8 1.5E-19 5.1E-24 190.8 18.7 413 11-496 100-542 (589)
82 2yd6_A PTPRD protein; hydrolas 99.8 2.2E-18 7.5E-23 156.8 22.4 138 281-450 64-206 (212)
83 2yd1_A Tyrosine-protein phosph 99.8 6.5E-18 2.2E-22 153.6 24.3 195 112-453 5-205 (212)
84 1zvo_C Myeloma immunoglobulin 99.8 6E-17 2E-21 167.6 33.3 304 68-442 78-497 (512)
85 1igt_B IGG2A intact antibody - 99.8 2.3E-18 7.7E-23 175.2 21.8 274 120-444 6-337 (444)
86 3uto_A Twitchin; kinase, muscl 99.8 5.2E-18 1.8E-22 176.7 23.7 95 12-108 8-103 (573)
87 2va4_A NCAM2, N-CAM 2, neural 99.8 5.6E-18 1.9E-22 151.1 20.7 82 365-447 104-192 (192)
88 4fom_A Poliovirus receptor-rel 99.8 1.3E-19 4.4E-24 175.0 9.9 219 68-319 72-303 (308)
89 1ry7_B FGFR-3, fibroblast grow 99.8 3.1E-19 1E-23 174.3 12.2 222 68-320 59-331 (334)
90 2o26_X MAST/stem cell growth f 99.8 6.9E-18 2.3E-22 161.3 21.2 237 25-318 25-290 (290)
91 2wv3_A Neuroplastin; igcam, me 99.8 1.5E-17 5E-22 148.4 21.6 83 364-447 101-189 (190)
92 1za6_B IGG heavy chain; immuno 99.8 2.4E-18 8.1E-23 168.9 16.1 266 120-439 6-332 (344)
93 2iep_A Muscle-specific kinase 99.8 5.8E-18 2E-22 151.1 16.5 83 364-450 109-192 (192)
94 4fqp_A Poliovirus receptor; im 99.8 1.6E-18 5.5E-23 167.7 13.5 216 69-319 78-307 (313)
95 2wqr_A IG epsilon chain C regi 99.8 2.2E-18 7.6E-23 167.6 14.4 242 130-437 25-309 (323)
96 1iga_A IGA1; immunoglobulin; N 99.8 9.4E-17 3.2E-21 164.7 26.9 275 119-445 6-342 (475)
97 3ejj_X Macrophage colony-stimu 99.8 3E-17 1E-21 156.6 19.7 214 67-318 48-283 (289)
98 1hzh_H IGG, immunoglobulin hea 99.8 2.1E-17 7.3E-22 168.7 19.9 272 121-444 7-346 (457)
99 4fa8_A Secreted protein BARF1; 99.8 4.6E-18 1.6E-22 153.3 12.9 165 237-440 4-194 (203)
100 3grw_A Fibroblast growth facto 99.8 2.8E-17 9.5E-22 152.4 18.4 140 280-453 72-223 (241)
101 3ojm_B Fibroblast growth facto 99.8 2E-17 6.7E-22 152.1 17.2 140 280-453 76-226 (231)
102 3rbs_A Myomesin-1; immunoglobu 99.8 1.1E-17 3.7E-22 151.5 15.1 164 121-314 9-205 (207)
103 2v44_A NCAM2, neural cell adhe 99.8 5.4E-17 1.9E-21 144.4 18.8 176 119-446 7-185 (189)
104 2v5t_A NCAM2, N-CAM 2, neural 99.7 4.4E-17 1.5E-21 144.8 17.8 80 365-447 108-187 (189)
105 2c5d_C AXL oncogene, tyrosine- 99.7 1.3E-16 4.4E-21 142.8 20.6 75 364-446 115-191 (195)
106 1itb_B Type 1 interleukin-1 re 99.7 4.7E-17 1.6E-21 157.4 18.8 210 69-315 61-313 (315)
107 1rhf_A Tyrosine-protein kinase 99.7 1.1E-16 3.7E-21 141.5 19.3 73 364-446 107-181 (182)
108 3r8q_A Fibronectin; heparin, F 99.7 8.1E-16 2.8E-20 146.9 26.6 84 11-99 18-103 (290)
109 4fa8_A Secreted protein BARF1; 99.7 1.5E-17 5.3E-22 149.8 13.5 160 123-308 2-194 (203)
110 3rjd_A High affinity immunoglo 99.7 2.5E-16 8.4E-21 147.8 22.4 221 26-306 15-249 (262)
111 3s97_C Contactin-1; carbonic a 99.7 8.3E-17 2.8E-21 144.5 18.3 186 119-447 13-200 (201)
112 3oq3_B IFN-alpha/beta binding 99.7 4.9E-17 1.7E-21 158.5 17.9 251 24-314 41-328 (329)
113 1tdq_A Tenascin-R; extracellul 99.7 4.3E-15 1.5E-19 141.3 31.0 82 11-97 12-95 (283)
114 3mtr_A N-CAM-1, NCAM-1, neural 99.7 1.8E-17 6.3E-22 151.0 13.9 194 111-451 17-212 (215)
115 1igy_B IGG1 intact antibody MA 99.7 4.1E-19 1.4E-23 180.2 3.1 264 121-439 6-322 (434)
116 4dep_C Interleukin-1 receptor 99.7 1E-17 3.4E-22 164.6 12.8 220 69-316 78-333 (349)
117 2r15_A Myomesin-1; sarcomeric 99.7 1.4E-16 4.8E-21 144.4 18.0 161 127-316 15-210 (212)
118 2q7n_A Leukemia inhibitory fac 99.7 3.9E-15 1.3E-19 150.9 30.2 324 12-497 88-432 (488)
119 2r15_A Myomesin-1; sarcomeric 99.7 2.1E-16 7.1E-21 143.3 18.9 185 240-448 16-210 (212)
120 3rbs_A Myomesin-1; immunoglobu 99.7 1.3E-16 4.4E-21 144.4 17.4 184 235-446 11-205 (207)
121 1epf_A NCAM, protein (neural c 99.7 2E-16 7E-21 140.9 17.7 126 279-446 61-189 (191)
122 3mjg_X Beta-type platelet-deri 99.7 1.4E-16 4.8E-21 152.0 17.7 209 70-321 51-283 (289)
123 2vr9_A Roundabout 1, ROBO; imm 99.7 1.3E-16 4.3E-21 145.4 16.4 87 363-453 116-211 (217)
124 3u83_A Poliovirus receptor-rel 99.7 2.6E-17 8.9E-22 160.3 12.4 215 68-320 90-324 (331)
125 3bp6_B Programmed cell death 1 99.7 3.7E-16 1.3E-20 140.7 18.0 171 119-318 7-195 (202)
126 2v9r_A Roundabout homolog 1; p 99.7 2.1E-16 7.2E-21 143.2 16.5 132 281-453 73-207 (212)
127 4dkd_C Macrophage colony-stimu 99.7 5.6E-17 1.9E-21 154.9 13.1 214 68-320 49-285 (292)
128 3l5h_A Interleukin-6 receptor 99.7 2.2E-16 7.7E-21 166.5 17.5 357 12-447 197-586 (589)
129 2ny1_B T-cell surface glycopro 99.7 1.4E-16 4.9E-21 141.2 13.0 163 123-320 4-183 (184)
130 2wng_A Tyrosine-protein phosph 99.7 1.9E-15 6.6E-20 146.9 22.2 208 68-308 72-311 (327)
131 3sgj_C Human FCG3A receptor; r 99.7 3.3E-16 1.1E-20 141.4 15.0 168 113-322 7-180 (204)
132 1zlg_A Anosmin 1; insulin-like 99.7 3.5E-14 1.2E-18 151.8 33.2 319 12-354 265-665 (680)
133 1f97_A Junction adhesion molec 99.7 3.5E-16 1.2E-20 141.6 14.4 171 236-448 11-207 (212)
134 3vh8_G Killer cell immunoglobu 99.7 1.4E-15 4.8E-20 147.2 19.6 251 26-318 37-315 (316)
135 1i1r_A GP130, interleukin-6 re 99.7 2.5E-15 8.4E-20 144.6 20.7 223 121-496 11-246 (303)
136 3k0w_A Mucosa-associated lymph 99.7 1.1E-15 3.8E-20 139.5 17.0 78 363-450 126-204 (218)
137 1zvo_C Myeloma immunoglobulin 99.7 1.7E-14 5.9E-19 149.2 28.0 304 120-439 6-388 (512)
138 1fnf_A Fibronectin; RGD, extra 99.7 7.4E-14 2.5E-18 138.0 30.7 81 14-98 95-177 (368)
139 1nbq_A JAM, junctional adhesio 99.7 2E-16 6.8E-21 142.9 11.1 81 365-446 117-207 (209)
140 3b5h_A Cervical EMMPRIN, HAB18 99.7 2.7E-15 9.3E-20 132.8 17.9 166 235-448 7-183 (184)
141 2c1o_A IGK-C protein; FAB frag 99.7 7E-16 2.4E-20 144.3 14.4 106 77-218 11-135 (254)
142 3o4o_C Interleukin-1 receptor 99.7 1.5E-16 5.3E-21 155.5 10.0 213 68-314 79-333 (339)
143 3t1w_A Four-domain fibronectin 99.7 7.8E-14 2.7E-18 138.2 29.6 94 3-100 86-180 (375)
144 4f80_A Butyrophilin subfamily 99.7 5.7E-15 2E-19 135.4 19.8 130 278-448 81-213 (226)
145 1f97_A Junction adhesion molec 99.7 1.9E-15 6.5E-20 136.7 16.4 166 119-316 6-207 (212)
146 1vca_A VCAM-D1,2, human vascul 99.7 1.4E-15 4.8E-20 137.1 14.7 172 238-451 13-200 (202)
147 1f2q_A High affinity immunoglo 99.6 6.3E-16 2.2E-20 136.0 11.7 165 113-319 4-174 (176)
148 2dtg_E Insulin receptor; IR ec 99.6 2E-16 6.8E-21 173.9 9.8 82 14-95 469-575 (897)
149 3jz7_A MCAR, CAR, coxsackievir 99.6 1.4E-15 4.8E-20 137.7 13.7 170 119-316 5-212 (214)
150 3jz7_A MCAR, CAR, coxsackievir 99.6 3.6E-16 1.2E-20 141.7 9.5 167 236-448 10-212 (214)
151 1fnl_A Low affinity immunoglob 99.6 3.6E-15 1.2E-19 131.0 15.6 162 112-316 6-174 (175)
152 1ugn_A LIR1, leukocyte immunog 99.6 5.2E-15 1.8E-19 132.8 17.0 81 365-447 110-197 (198)
153 3l5i_A Interleukin-6 receptor 99.6 3.1E-14 1.1E-18 135.8 23.3 84 11-99 1-90 (290)
154 3mtr_A N-CAM-1, NCAM-1, neural 99.6 5.9E-15 2E-19 134.2 17.4 131 363-496 26-158 (215)
155 4frw_A Poliovirus receptor-rel 99.6 6.6E-16 2.3E-20 140.1 10.5 131 278-446 77-209 (218)
156 3bp6_B Programmed cell death 1 99.6 1.7E-15 5.8E-20 136.3 13.1 168 237-449 13-194 (202)
157 2ifg_A High affinity nerve gro 99.6 1.4E-15 4.8E-20 149.3 13.5 170 235-450 167-347 (347)
158 1hng_A CD2; T lymphocyte adhes 99.6 3E-15 1E-19 131.7 13.6 112 280-446 61-174 (176)
159 1uct_A Immunoglobulin alpha FC 99.6 3.4E-15 1.1E-19 136.2 14.3 79 366-449 116-199 (218)
160 2oz4_A Intercellular adhesion 99.6 2.2E-15 7.6E-20 141.8 13.5 230 26-316 17-264 (265)
161 2ny1_B T-cell surface glycopro 99.6 7.9E-16 2.7E-20 136.4 9.4 157 237-453 6-184 (184)
162 3p2t_A Leukocyte immunoglobuli 99.6 3.6E-15 1.2E-19 133.6 13.5 168 237-446 15-194 (196)
163 3p2t_A Leukocyte immunoglobuli 99.6 8.5E-15 2.9E-19 131.1 15.5 158 113-304 5-179 (196)
164 3sbw_C Programmed cell death 1 99.6 3.9E-14 1.3E-18 129.3 20.0 133 278-450 78-213 (222)
165 3r4d_A CEA-related cell adhesi 99.6 6.9E-15 2.4E-19 132.8 14.3 172 236-451 9-203 (208)
166 2x1w_L Vascular endothelial gr 99.6 5.9E-15 2E-19 134.1 13.7 167 120-319 13-210 (213)
167 3sgj_C Human FCG3A receptor; r 99.6 3.4E-15 1.2E-19 134.8 11.7 160 236-453 17-179 (204)
168 2x1w_L Vascular endothelial gr 99.6 2.8E-15 9.5E-20 136.3 11.0 176 234-450 15-209 (213)
169 3ry4_A Low affinity immunoglob 99.6 1.5E-14 5E-19 126.2 14.8 159 114-314 5-169 (170)
170 2ifg_A High affinity nerve gro 99.6 3.4E-15 1.2E-19 146.5 11.9 176 111-318 156-347 (347)
171 1oll_A NK receptor; immune sys 99.6 3.9E-14 1.3E-18 126.0 17.3 126 280-447 57-187 (188)
172 3lpw_A A77-A78 domain from tit 99.6 1.7E-13 6E-18 122.3 21.7 181 11-259 3-186 (197)
173 2fbo_J V1V2;, variable region- 99.6 1.8E-14 6E-19 134.1 15.5 173 236-444 12-248 (250)
174 3b5h_A Cervical EMMPRIN, HAB18 99.6 1.1E-13 3.7E-18 122.4 19.5 156 124-316 8-183 (184)
175 2d3v_A Leukocyte immunoglobuli 99.6 1.6E-14 5.6E-19 129.3 14.0 158 113-304 5-180 (196)
176 2d3v_A Leukocyte immunoglobuli 99.6 8.5E-15 2.9E-19 131.2 11.7 158 237-436 15-180 (196)
177 2vkw_A Neural cell adhesion mo 99.6 1.5E-13 5.3E-18 124.2 19.6 185 9-260 4-194 (209)
178 1vca_A VCAM-D1,2, human vascul 99.6 8.7E-14 3E-18 125.2 17.5 165 122-319 9-200 (202)
179 3se4_A Interferon alpha/beta r 99.6 1.9E-13 6.5E-18 137.4 21.8 80 14-97 8-91 (414)
180 2ghw_B Anti-SARS SCFV antibody 99.6 1.3E-13 4.3E-18 128.2 18.4 184 236-447 12-241 (247)
181 2gi7_A GPVI protein; IG-like d 99.6 1.4E-14 4.7E-19 128.4 10.9 150 237-437 18-169 (184)
182 1fnl_A Low affinity immunoglob 99.6 2.2E-14 7.5E-19 125.9 11.9 154 237-448 18-174 (175)
183 4i0k_A CD276 antigen; immunogl 99.5 4.4E-14 1.5E-18 128.9 14.0 174 237-451 6-209 (222)
184 3mj8_L Stimulatory hamster ant 99.5 1.7E-13 5.9E-18 124.1 17.0 168 236-441 10-206 (213)
185 3mj6_A Junctional adhesion mol 99.5 7.8E-14 2.7E-18 131.2 15.3 178 119-319 10-240 (268)
186 1f3r_B FV antibody fragment; I 99.5 1.8E-13 6.3E-18 128.1 17.5 170 121-319 7-248 (257)
187 1f3r_B FV antibody fragment; I 99.5 1.3E-13 4.5E-18 129.1 16.5 188 236-451 10-248 (257)
188 1x5y_A Myosin binding protein 99.5 5.8E-14 2E-18 113.2 12.1 101 8-108 3-104 (111)
189 2d9q_B Granulocyte colony-stim 99.5 2.4E-13 8.2E-18 131.3 18.2 224 235-497 9-255 (313)
190 3mj6_A Junctional adhesion mol 99.5 6.5E-14 2.2E-18 131.8 13.4 172 236-449 15-238 (268)
191 3s96_B 3B5H10 FAB light chain; 99.5 3.4E-13 1.1E-17 122.6 17.2 130 276-440 71-212 (218)
192 3knb_B Obscurin-like protein 1 99.5 9.8E-14 3.3E-18 110.8 11.9 89 361-450 19-107 (107)
193 2pet_A Lutheran blood group gl 99.5 4.5E-14 1.5E-18 129.6 11.2 160 236-434 10-211 (231)
194 3r4d_A CEA-related cell adhesi 99.5 1.4E-13 4.9E-18 124.1 14.3 164 123-319 8-203 (208)
195 3d9a_L Light chain of hyhel10 99.5 3.5E-14 1.2E-18 128.8 10.3 170 236-444 11-209 (213)
196 3pv7_A B7-H6, IG-like domain-c 99.5 6.8E-14 2.3E-18 130.1 12.5 129 278-446 80-224 (248)
197 2fbo_J V1V2;, variable region- 99.5 4.7E-14 1.6E-18 131.2 11.2 158 119-306 7-239 (250)
198 2d9q_B Granulocyte colony-stim 99.5 1.6E-12 5.5E-17 125.4 22.4 258 122-453 8-310 (313)
199 2j8h_A Titin, connectin; cardi 99.5 1.1E-13 3.9E-18 123.6 13.2 133 69-229 61-194 (197)
200 2gi7_A GPVI protein; IG-like d 99.5 7.7E-14 2.6E-18 123.5 11.8 151 112-305 7-169 (184)
201 1nqb_A Single-chain antibody f 99.5 4.5E-13 1.5E-17 125.3 17.6 170 236-447 10-232 (256)
202 2ghw_B Anti-SARS SCFV antibody 99.5 7.8E-13 2.7E-17 122.8 19.1 166 121-315 9-241 (247)
203 1f2q_A High affinity immunoglo 99.5 2.7E-14 9.2E-19 125.5 8.6 157 237-451 15-174 (176)
204 3gkz_A Anti-methamphetamine si 99.5 4.8E-13 1.6E-17 125.1 17.5 186 235-453 17-254 (257)
205 2yuw_A Myosin binding protein 99.5 1.6E-13 5.4E-18 110.4 12.1 99 10-108 4-103 (110)
206 2if7_A SLAM family member 6; N 99.5 3E-13 1E-17 120.7 15.2 114 279-441 69-185 (193)
207 3auv_A SC-DSFV derived from th 99.5 7.1E-13 2.4E-17 125.4 18.5 190 236-453 22-259 (276)
208 3juy_B 3B3 single chain varian 99.5 1.2E-12 4E-17 122.5 19.6 128 278-437 83-245 (256)
209 3mj8_L Stimulatory hamster ant 99.5 9E-14 3.1E-18 126.0 11.7 158 123-309 9-206 (213)
210 3nl4_L Antigen binding fragmen 99.5 2.2E-13 7.4E-18 123.5 14.0 153 236-432 11-198 (213)
211 1jbj_A CD3 epsilon and gamma e 99.5 3.8E-14 1.3E-18 125.8 8.8 136 126-306 11-179 (186)
212 1mq8_A ICAM-1, intercellular a 99.5 3.3E-13 1.1E-17 127.7 15.4 251 121-451 6-285 (291)
213 3uzq_A Anti-dengue MAB 4E11; d 99.5 6.9E-13 2.4E-17 123.8 17.5 174 120-322 7-250 (253)
214 1lk3_L 9D7 light chain; antige 99.5 1.1E-13 3.7E-18 125.3 11.6 167 235-440 9-204 (210)
215 2a38_A Titin; Z1Z2, structural 99.5 1.9E-13 6.5E-18 121.7 12.9 131 68-228 61-191 (194)
216 1za6_B IGG heavy chain; immuno 99.5 3.4E-13 1.2E-17 132.1 15.7 205 68-306 77-331 (344)
217 4fmk_A Poliovirus receptor-rel 99.5 6.4E-13 2.2E-17 120.8 16.4 165 121-313 8-214 (225)
218 1x4z_A Biregional cell adhesio 99.5 6.6E-13 2.2E-17 108.7 14.6 106 2-108 6-114 (121)
219 2crm_A Fibronectin type-III do 99.5 4.6E-13 1.6E-17 109.5 13.7 99 2-102 6-107 (120)
220 1wis_A KIAA1514 protein; FNIII 99.5 2.9E-13 1E-17 111.4 11.9 105 2-107 6-116 (124)
221 3umt_A SCFV heavy chain and li 99.5 6.4E-13 2.2E-17 124.2 15.6 179 237-450 13-247 (256)
222 1n26_A IL-6 receptor alpha cha 99.5 9.4E-13 3.2E-17 127.8 17.3 216 239-497 19-246 (325)
223 3knb_A Titin; IG-like, titin, 99.5 2.5E-13 8.4E-18 107.1 10.7 92 112-230 4-97 (100)
224 3uzq_A Anti-dengue MAB 4E11; d 99.5 8.9E-13 3E-17 123.0 16.4 183 236-453 11-249 (253)
225 3auv_A SC-DSFV derived from th 99.5 1.8E-12 6E-17 122.7 18.5 171 119-318 17-256 (276)
226 1cfb_A Drosophila neuroglian; 99.5 4.9E-12 1.7E-16 113.9 20.6 93 11-106 3-98 (205)
227 4i0k_A CD276 antigen; immunogl 99.5 1.2E-13 4.2E-18 126.0 10.0 169 123-320 4-210 (222)
228 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.5 1.8E-12 6E-17 121.3 18.2 168 119-316 8-248 (256)
229 2p1y_A Bispecific alpha/beta T 99.5 9.8E-13 3.3E-17 121.4 16.3 155 119-303 5-222 (238)
230 3knb_B Obscurin-like protein 1 99.5 1.6E-13 5.4E-18 109.6 9.4 91 112-229 12-102 (107)
231 1dr9_A B7-1 (CD80), T lymphocy 99.5 6.1E-13 2.1E-17 119.3 14.4 167 237-444 5-197 (201)
232 2cqv_A MLCK, myosin light chai 99.5 9.5E-13 3.2E-17 106.5 14.0 95 361-456 13-107 (114)
233 1x3d_A Fibronectin type-III do 99.5 6.1E-13 2.1E-17 108.4 12.9 101 2-105 6-108 (118)
234 1dr9_A B7-1 (CD80), T lymphocy 99.5 7.9E-13 2.7E-17 118.6 14.7 164 123-311 3-196 (201)
235 2crz_A Fibronectin type-III do 99.5 5.2E-13 1.8E-17 107.3 12.1 98 8-107 3-102 (110)
236 1nqb_A Single-chain antibody f 99.5 2.9E-12 1E-16 119.8 18.9 169 119-316 5-233 (256)
237 3tv3_L PGT128 light chain, IG 99.5 1.8E-12 6.3E-17 117.2 17.0 166 236-441 10-204 (211)
238 3esu_F Antibody 14B7* light ch 99.5 1.5E-12 5.1E-17 121.1 16.8 175 236-433 14-231 (250)
239 1mju_H Immunoglobulin MS6-12; 99.5 1.1E-12 3.9E-17 120.2 15.7 85 367-453 133-222 (227)
240 3p4l_A Neogenin; iron homeosta 99.5 5.4E-12 1.9E-16 114.2 20.0 89 12-101 3-95 (211)
241 1jbj_A CD3 epsilon and gamma e 99.5 4E-14 1.4E-18 125.6 5.7 167 239-438 12-179 (186)
242 1qok_A MFE-23 recombinant anti 99.5 1.7E-12 5.9E-17 123.2 17.3 184 236-448 36-268 (282)
243 1bpv_A Titin, A71, connectin; 99.5 1.6E-13 5.4E-18 110.4 8.5 95 12-106 9-105 (112)
244 1p6f_A NKP46, natural cytotoxi 99.5 1E-12 3.4E-17 121.7 15.1 170 237-453 17-196 (242)
245 3gkz_A Anti-methamphetamine si 99.4 2.3E-12 7.7E-17 120.5 17.5 174 119-321 13-254 (257)
246 2zg1_A Sialic acid-binding IG- 99.4 7.8E-13 2.7E-17 119.8 13.8 167 119-312 5-209 (214)
247 3ry4_A Low affinity immunoglob 99.4 4.5E-13 1.5E-17 116.7 11.6 152 237-446 15-169 (170)
248 1hnf_A CD2; T lymphocyte adhes 99.4 1.1E-12 3.6E-17 115.7 14.0 158 121-314 6-179 (182)
249 3knb_A Titin; IG-like, titin, 99.4 1.4E-12 4.7E-17 102.7 13.2 87 361-448 11-99 (100)
250 1p6f_A NKP46, natural cytotoxi 99.4 1.8E-12 6.1E-17 120.0 16.0 176 112-321 6-196 (242)
251 3esu_F Antibody 14B7* light ch 99.4 3.1E-12 1.1E-16 119.0 17.7 154 119-301 9-231 (250)
252 2wqr_A IG epsilon chain C regi 99.4 2.6E-13 8.8E-18 131.6 10.6 203 71-305 73-309 (323)
253 1moe_A Anti-CEA MAB T84.66; an 99.4 4.4E-12 1.5E-16 117.1 18.2 163 236-434 11-220 (240)
254 2znx_A SCFV; fluorotryptohpan, 99.4 2.6E-12 8.8E-17 119.1 16.6 155 119-302 6-222 (242)
255 3sob_L Antibody light chain; b 99.4 1.4E-12 4.9E-17 120.0 14.5 169 236-443 34-231 (237)
256 1nkr_A P58-CL42 KIR; inhibitor 99.4 3.7E-12 1.2E-16 114.4 16.8 156 236-435 17-184 (201)
257 3d9a_L Light chain of hyhel10 99.4 8.1E-13 2.8E-17 119.6 12.5 162 120-310 7-207 (213)
258 3ux9_B SCFV antibody; five hel 99.4 3.2E-12 1.1E-16 119.4 16.7 154 121-303 9-236 (256)
259 3qib_D 2B4 beta chain; IG doma 99.4 1E-12 3.5E-17 123.9 13.3 194 204-439 4-246 (270)
260 3lcy_A Titin; A-BAND, IG tande 99.4 1.5E-12 5.1E-17 116.0 13.7 129 69-229 62-193 (197)
261 1sy6_A T-cell surface glycopro 99.4 6.8E-13 2.3E-17 119.5 11.5 187 236-446 13-202 (204)
262 2kbg_A N-CAM 2, neural cell ad 99.4 5.3E-13 1.8E-17 106.9 9.5 91 8-100 3-94 (114)
263 1x4x_A Fibronectin type-III do 99.4 1.4E-12 4.9E-17 103.9 12.1 90 9-101 3-92 (106)
264 2znx_A SCFV; fluorotryptohpan, 99.4 2.9E-12 9.9E-17 118.7 16.0 171 236-435 11-223 (242)
265 1moe_A Anti-CEA MAB T84.66; an 99.4 3.4E-12 1.2E-16 117.8 16.5 154 119-301 6-219 (240)
266 3r06_A Anti-mouse CD3epsilon a 99.4 1.6E-12 5.6E-17 117.6 13.9 166 236-440 11-205 (213)
267 2yd6_A PTPRD protein; hydrolas 99.4 2.3E-12 7.7E-17 116.7 14.8 129 68-224 61-195 (212)
268 1qr4_A Protein (tenascin); fib 99.4 1.8E-11 6.3E-16 108.2 20.4 171 10-259 3-175 (186)
269 3umt_A SCFV heavy chain and li 99.4 3.4E-12 1.2E-16 119.2 16.5 168 122-318 10-247 (256)
270 2p1y_A Bispecific alpha/beta T 99.4 2E-12 6.9E-17 119.2 14.6 164 236-435 10-222 (238)
271 1svz_A Immunoglobulin;, single 99.4 3.9E-12 1.3E-16 118.1 16.3 163 236-434 11-228 (247)
272 3eow_R Poliovirus receptor; im 99.4 7.8E-13 2.7E-17 120.6 11.3 172 121-321 6-215 (221)
273 4dzb_B Vbeta2 (MAIT T cell rec 99.4 3.1E-12 1.1E-16 118.6 15.6 72 367-439 137-222 (246)
274 2xzc_L FAB A.17 light chain; i 99.4 5.8E-12 2E-16 114.3 16.9 168 236-441 10-208 (216)
275 1q0x_L FAB 9B1, light chain; a 99.4 5.8E-12 2E-16 113.9 16.7 164 236-437 10-204 (212)
276 2v44_A NCAM2, neural cell adhe 99.4 2.6E-12 9E-17 113.8 14.1 123 68-225 56-180 (189)
277 1svz_A Immunoglobulin;, single 99.4 3.2E-12 1.1E-16 118.7 15.3 155 119-302 6-228 (247)
278 3nl4_L Antigen binding fragmen 99.4 3.3E-12 1.1E-16 115.6 14.9 153 119-300 6-198 (213)
279 1qok_A MFE-23 recombinant anti 99.4 8.6E-12 2.9E-16 118.4 18.2 168 119-316 31-268 (282)
280 3ux9_B SCFV antibody; five hel 99.4 5.1E-12 1.7E-16 118.0 16.2 174 236-435 12-236 (256)
281 2gee_A Hypothetical protein; f 99.4 2.9E-11 9.9E-16 108.7 20.6 177 7-260 17-197 (203)
282 2e7c_A Myosin-binding protein 99.4 2.8E-12 9.5E-17 104.4 12.6 108 94-228 2-111 (118)
283 1lk3_L 9D7 light chain; antige 99.4 1.6E-12 5.6E-17 117.4 12.4 158 121-307 7-203 (210)
284 3omz_A Human vdelta1 gamma del 99.4 8.5E-12 2.9E-16 116.8 17.7 153 278-452 77-254 (259)
285 1nfd_E H57 FAB; complex (immun 99.4 2.7E-13 9.1E-18 122.8 7.1 164 236-437 9-201 (212)
286 2ibg_A CG9211-PA, GH03927P; IH 99.4 1.2E-11 4.1E-16 112.1 18.1 92 14-106 2-106 (214)
287 1v5j_A KIAA1355 protein, RSGI 99.4 8.3E-13 2.9E-17 104.8 8.9 89 12-102 6-95 (108)
288 2pet_A Lutheran blood group gl 99.4 1.9E-12 6.6E-17 118.6 12.7 155 119-302 5-211 (231)
289 2wv3_A Neuroplastin; igcam, me 99.4 4.1E-12 1.4E-16 112.7 14.4 127 68-228 54-186 (190)
290 1b6u_A KIR2DL3, P58 killer cel 99.4 5.8E-12 2E-16 117.6 15.7 173 112-319 6-204 (257)
291 1nkr_A P58-CL42 KIR; inhibitor 99.4 1.1E-11 3.7E-16 111.2 16.9 156 112-302 7-183 (201)
292 2yrz_A Integrin beta-4; GP150, 99.4 1.6E-12 5.5E-17 105.9 10.4 96 3-100 7-103 (118)
293 2gjj_A A21 single-chain antibo 99.4 1E-11 3.5E-16 116.6 17.3 155 119-302 10-239 (264)
294 1q9r_B S25-2 FAB (IGG1K) heavy 99.4 2.8E-12 9.7E-17 117.0 13.0 170 236-444 10-219 (222)
295 2zg1_A Sialic acid-binding IG- 99.4 1.7E-12 5.7E-17 117.6 11.3 163 237-444 11-209 (214)
296 1c1e_H Catalytic antibody 1E9 99.4 6.6E-12 2.3E-16 114.2 15.3 160 120-309 6-213 (219)
297 2yd1_A Tyrosine-protein phosph 99.4 6.8E-12 2.3E-16 113.5 15.2 125 69-224 63-191 (212)
298 4f80_A Butyrophilin subfamily 99.4 5.3E-12 1.8E-16 115.5 14.3 183 121-317 11-214 (226)
299 4fmk_A Poliovirus receptor-rel 99.4 2.4E-12 8.3E-17 117.0 11.9 168 237-446 12-215 (225)
300 2yux_A Myosin-binding protein 99.4 2.7E-12 9.4E-17 104.8 10.9 96 9-105 13-109 (120)
301 1n26_A IL-6 receptor alpha cha 99.4 1.2E-10 4.2E-15 112.8 24.2 238 120-437 12-281 (325)
302 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.4 5.8E-12 2E-16 117.7 14.1 176 236-448 13-248 (256)
303 1x5x_A Fibronectin type-III do 99.4 3.4E-12 1.1E-16 102.3 10.7 91 10-102 4-96 (109)
304 1epf_A NCAM, protein (neural c 99.4 6.3E-12 2.2E-16 111.5 13.6 122 67-223 59-182 (191)
305 2ic2_A CG9211-PA, GH03927P; IH 99.4 2.5E-12 8.5E-17 103.9 9.8 93 12-108 4-109 (115)
306 1ccz_A Protein (CD58); LFA-3, 99.4 1.6E-12 5.5E-17 113.5 9.3 152 122-312 3-167 (171)
307 1c1e_H Catalytic antibody 1E9 99.4 3.6E-12 1.2E-16 115.9 12.1 170 236-444 10-216 (219)
308 3s97_C Contactin-1; carbonic a 99.4 8.4E-12 2.9E-16 111.5 14.2 178 15-229 13-198 (201)
309 2e3v_A Neural cell adhesion mo 99.4 3.3E-12 1.1E-16 104.6 10.5 95 9-104 3-101 (122)
310 2haz_A N-CAM 1, neural cell ad 99.4 1.8E-12 6.2E-17 103.1 8.7 92 10-102 3-98 (105)
311 1q0x_L FAB 9B1, light chain; a 99.4 7.1E-12 2.4E-16 113.3 13.7 156 121-305 7-204 (212)
312 1wfu_A Unnamed protein product 99.4 4.4E-12 1.5E-16 102.8 10.8 91 10-102 12-107 (120)
313 3r06_A Anti-mouse CD3epsilon a 99.4 6.1E-12 2.1E-16 113.8 13.0 160 119-307 6-204 (213)
314 1b6u_A KIR2DL3, P58 killer cel 99.3 8E-12 2.7E-16 116.6 13.9 172 236-451 16-204 (257)
315 2ed7_A Netrin receptor DCC; tu 99.3 1E-11 3.5E-16 101.1 12.9 96 6-102 10-106 (119)
316 2xzc_L FAB A.17 light chain; i 99.3 1.7E-11 5.9E-16 111.2 15.7 159 121-307 7-206 (216)
317 1x5f_A Neogenin; RGM binding, 99.3 8.3E-12 2.8E-16 101.9 12.2 99 3-101 7-106 (120)
318 2ee2_A Contactin-1; neural cel 99.3 1.9E-11 6.4E-16 99.6 14.3 98 2-102 6-106 (119)
319 3bkj_L WO2 IGG2A FAB fragment 99.3 6.4E-12 2.2E-16 117.1 13.0 165 236-439 44-242 (252)
320 3sob_L Antibody light chain; b 99.3 1.5E-11 5E-16 113.2 15.3 162 119-309 29-229 (237)
321 1op3_H FAB 2G12, heavy chain; 99.3 2.5E-11 8.6E-16 111.0 16.6 125 278-439 77-216 (225)
322 1x5g_A Neogenin; RGM binding, 99.3 2E-11 6.8E-16 98.9 14.2 99 2-104 4-105 (116)
323 3d9a_H Heavy chain of hyhel10 99.3 4.8E-12 1.6E-16 114.4 11.6 166 236-441 10-207 (210)
324 1wfn_A Sidekick 2; FN3, cell a 99.3 3.5E-12 1.2E-16 104.0 9.5 99 2-101 6-105 (119)
325 1tdq_A Tenascin-R; extracellul 99.3 1.7E-10 5.7E-15 109.3 22.6 172 276-496 64-238 (283)
326 1ccz_A Protein (CD58); LFA-3, 99.3 2.6E-12 8.8E-17 112.2 9.1 147 237-444 6-167 (171)
327 2ha1_A Fibronectin; beta sandw 99.3 4.1E-11 1.4E-15 107.4 17.2 80 15-98 1-84 (201)
328 1nfd_E H57 FAB; complex (immun 99.3 9.4E-13 3.2E-17 119.2 6.4 158 121-307 6-203 (212)
329 2iep_A Muscle-specific kinase 99.3 5E-12 1.7E-16 112.2 11.0 120 68-222 60-179 (192)
330 3f7q_A Integrin beta-4, GP150; 99.3 1.5E-11 5.1E-16 113.2 14.5 86 12-101 4-89 (234)
331 2e7c_A Myosin-binding protein 99.3 1.9E-11 6.7E-16 99.4 13.6 88 362-451 31-118 (118)
332 2cqv_A MLCK, myosin light chai 99.3 1.4E-11 4.7E-16 99.6 12.5 89 112-227 6-94 (114)
333 2va4_A NCAM2, N-CAM 2, neural 99.3 1.6E-11 5.6E-16 108.8 14.2 128 67-228 55-189 (192)
334 3qp3_A Titin; I-SET IG-like, s 99.3 1.9E-11 6.6E-16 96.7 13.1 87 362-449 15-101 (103)
335 3m8o_H Immunoglobulin A1 heavy 99.3 2.9E-10 9.8E-15 103.5 22.8 120 278-438 79-213 (221)
336 2c5d_C AXL oncogene, tyrosine- 99.3 2.1E-11 7.2E-16 108.6 14.8 116 69-223 67-183 (195)
337 1pz5_B Heavy chain of FAB (SYA 99.3 1.8E-11 6.2E-16 111.4 14.5 161 120-310 6-215 (220)
338 1rhf_A Tyrosine-protein kinase 99.3 2.5E-11 8.7E-16 106.7 15.0 114 69-223 59-173 (182)
339 2j6e_L IGM, FAB light chain; a 99.3 2.8E-12 9.7E-17 117.9 9.2 167 235-439 28-226 (234)
340 3tv3_L PGT128 light chain, IG 99.3 5.4E-12 1.8E-16 114.0 10.8 156 123-309 9-204 (211)
341 2edx_A Protein tyrosine phosph 99.3 1.8E-11 6.1E-16 102.0 13.1 101 2-102 6-111 (134)
342 1uem_A KIAA1568 protein; immun 99.3 1.2E-11 4.1E-16 100.4 11.7 101 6-108 8-110 (117)
343 1wf5_A Sidekick 2 protein; FNI 99.3 8.9E-12 3.1E-16 101.9 10.9 96 10-106 14-112 (121)
344 2gki_A Nuclease; anti-DNA anti 99.3 2.6E-11 8.8E-16 115.6 15.8 154 121-303 29-258 (291)
345 1hnf_A CD2; T lymphocyte adhes 99.3 2.3E-11 7.8E-16 107.1 14.2 152 237-445 10-178 (182)
346 1q9r_B S25-2 FAB (IGG1K) heavy 99.3 2.2E-11 7.6E-16 111.0 14.7 159 121-309 7-216 (222)
347 1bqu_A Protein (GP130); cytoki 99.3 1.7E-11 5.8E-16 111.2 13.5 85 11-97 5-90 (215)
348 1x5l_A Ephrin type-A receptor 99.3 7.1E-12 2.4E-16 100.8 9.8 97 5-102 2-98 (111)
349 3k0w_A Mucosa-associated lymph 99.3 2.9E-11 1E-15 109.9 15.1 158 16-222 24-191 (218)
350 1va9_A DOWN syndrome cell adhe 99.3 8.4E-12 2.9E-16 102.1 10.3 101 2-102 3-110 (122)
351 3fku_X Neutralizing antibody F 99.3 3.4E-11 1.2E-15 114.1 16.0 168 121-318 7-252 (280)
352 3d9a_H Heavy chain of hyhel10 99.3 1.6E-11 5.3E-16 110.9 13.0 157 120-307 6-205 (210)
353 3r8q_A Fibronectin; heparin, F 99.3 2.9E-10 9.9E-15 108.1 22.5 174 275-496 69-243 (290)
354 1sy6_A T-cell surface glycopro 99.3 1.4E-12 4.7E-17 117.5 5.9 147 126-314 15-202 (204)
355 1pz5_B Heavy chain of FAB (SYA 99.3 1.5E-11 5.3E-16 111.9 12.9 163 236-442 10-215 (220)
356 2ed9_A Netrin receptor DCC; tu 99.3 2.5E-11 8.6E-16 99.6 13.0 99 2-102 16-117 (124)
357 2gki_A Nuclease; anti-DNA anti 99.3 3E-11 1E-15 115.1 15.4 179 236-449 32-273 (291)
358 3liz_H 4C3 monoclonal antibody 99.3 3.7E-11 1.3E-15 112.0 15.6 128 278-447 77-219 (253)
359 1x9q_A SCFV, 4M5.3 anti-fluore 99.3 2.9E-11 1E-15 113.7 15.0 155 119-302 20-254 (268)
360 2dru_A Chimera of CD48 antigen 99.3 6.2E-12 2.1E-16 110.7 9.6 148 236-443 9-176 (180)
361 1hxm_B Gamma-delta T-cell rece 99.3 2.5E-10 8.5E-15 105.6 20.7 132 278-446 78-227 (242)
362 2v5t_A NCAM2, N-CAM 2, neural 99.3 8E-12 2.7E-16 110.5 10.2 128 69-228 56-184 (189)
363 2dm4_A Sortilin-related recept 99.3 1.8E-11 6.1E-16 97.8 11.3 90 9-102 3-95 (108)
364 2dru_A Chimera of CD48 antigen 99.3 1.3E-11 4.4E-16 108.7 11.3 153 121-311 6-176 (180)
365 1x5h_A Neogenin; RGM binding, 99.3 5.6E-12 1.9E-16 104.8 8.5 102 2-103 6-110 (132)
366 3eow_R Poliovirus receptor; im 99.3 2.7E-12 9.2E-17 117.0 7.1 174 236-453 9-215 (221)
367 3q5y_A TCR N15 beta; IG, T cel 99.3 5.4E-11 1.8E-15 109.8 16.0 71 367-438 134-214 (240)
368 2gjj_A A21 single-chain antibo 99.3 4.1E-11 1.4E-15 112.5 15.4 172 236-434 15-239 (264)
369 1uen_A KIAA0343 protein; immun 99.3 1.7E-11 5.8E-16 100.8 11.3 101 1-101 1-111 (125)
370 1x5z_A Receptor-type tyrosine- 99.3 9.1E-12 3.1E-16 100.8 9.4 96 2-102 6-102 (115)
371 3fku_X Neutralizing antibody F 99.3 4.1E-11 1.4E-15 113.5 15.5 189 235-451 9-253 (280)
372 1x5i_A Neogenin; RGM binding, 99.3 3E-11 1E-15 99.4 12.5 97 2-101 10-112 (126)
373 2e7h_A Ephrin type-B receptor 99.3 2.4E-11 8.3E-16 97.3 11.6 91 8-102 2-96 (109)
374 2djs_A Ephrin type-B receptor 99.3 1.6E-11 5.3E-16 98.2 10.4 93 8-102 2-95 (108)
375 3irg_B Obscurin-like protein 1 99.3 2.8E-11 9.7E-16 96.4 11.9 88 362-450 20-107 (107)
376 3qp3_A Titin; I-SET IG-like, s 99.3 1.6E-11 5.6E-16 97.1 10.3 89 113-228 8-96 (103)
377 3nfj_J T cell receptor beta ch 99.3 1.9E-10 6.3E-15 106.5 19.0 131 277-439 71-221 (245)
378 1waa_A Titin; metal binding pr 99.3 1.5E-11 5.2E-16 95.2 9.7 80 112-219 4-83 (93)
379 3bkj_L WO2 IGG2A FAB fragment 99.3 2.3E-11 8E-16 113.2 12.8 159 119-306 39-241 (252)
380 3lpw_A A77-A78 domain from tit 99.3 5.9E-11 2E-15 105.7 15.0 141 317-496 5-148 (197)
381 2bk8_A Connectin, M1, titin he 99.3 4.7E-11 1.6E-15 93.3 12.5 87 361-448 7-94 (97)
382 3pl6_D MBP peptide / T-cell re 99.3 1.2E-10 4.1E-15 109.4 17.6 124 278-438 98-242 (268)
383 1uey_A KIAA0343 protein; immun 99.3 5.6E-11 1.9E-15 98.0 13.5 94 11-106 14-110 (127)
384 2fbj_H IGA-kappa J539 FAB (hea 99.3 5.7E-11 1.9E-15 108.2 14.8 165 236-439 10-212 (220)
385 2dm2_A Palladin; beta-sandwich 99.3 2.4E-11 8.4E-16 97.4 10.9 92 361-453 14-107 (110)
386 3bae_H WO2 IGG2A FAB fragment 99.3 4.6E-11 1.6E-15 109.4 14.2 170 235-443 9-221 (228)
387 1g1c_A Immunoglobulin-like dom 99.3 6.6E-11 2.2E-15 92.7 13.1 86 362-448 12-98 (99)
388 2lu7_A Obscurin-like protein 1 99.3 1.2E-11 4.2E-16 93.6 8.5 72 121-219 3-74 (84)
389 3puc_A Titin; I-SET IG-like do 99.3 6.6E-11 2.3E-15 92.7 13.1 86 362-448 13-98 (99)
390 4ei6_B Vbeta16 XV19 type II na 99.3 1E-10 3.5E-15 108.2 16.6 130 278-439 74-221 (245)
391 3puc_A Titin; I-SET IG-like do 99.3 2.4E-11 8.2E-16 95.3 10.4 89 113-228 6-94 (99)
392 1nbq_A JAM, junctional adhesio 99.3 7.9E-12 2.7E-16 112.4 8.5 124 70-224 68-199 (209)
393 1ugn_A LIR1, leukocyte immunog 99.3 5.1E-11 1.8E-15 106.5 13.5 159 25-220 17-181 (198)
394 3fl7_A Ephrin receptor; ATP-bi 99.3 7.8E-12 2.7E-16 127.7 9.1 177 288-495 303-484 (536)
395 2vkw_A Neural cell adhesion mo 99.3 7.9E-12 2.7E-16 112.9 8.2 138 313-491 4-149 (209)
396 1wfo_A Sidekick 2; FN3, cell a 99.3 2.1E-11 7.2E-16 101.1 10.1 96 4-100 18-115 (130)
397 2kkq_A Myotilin; unknown funct 99.3 6E-11 2.1E-15 96.1 12.6 93 360-453 20-114 (116)
398 1wit_A Twitchin 18TH IGSF modu 99.3 2.7E-11 9.4E-16 93.8 10.1 87 113-228 2-90 (93)
399 2dbj_A Proto-oncogene tyrosine 99.3 6.5E-11 2.2E-15 97.2 12.9 99 2-102 6-111 (124)
400 1x9q_A SCFV, 4M5.3 anti-fluore 99.3 1.1E-10 3.7E-15 109.8 16.1 173 236-434 25-254 (268)
401 2yuz_A Myosin-binding protein 99.3 3.9E-11 1.3E-15 94.3 10.9 87 360-451 12-98 (100)
402 2lu7_A Obscurin-like protein 1 99.3 2.6E-11 8.9E-16 91.8 9.5 81 362-448 3-83 (84)
403 2dju_A Receptor-type tyrosine- 99.3 5E-11 1.7E-15 94.8 11.7 90 9-103 3-94 (106)
404 3fl7_A Ephrin receptor; ATP-bi 99.3 1.2E-10 3.9E-15 119.1 17.2 180 11-258 331-522 (536)
405 1gsm_A Madcam-1, mucosal addre 99.3 5.3E-11 1.8E-15 106.3 12.9 156 237-437 18-194 (210)
406 2edb_A Netrin receptor DCC; tu 99.3 3.7E-11 1.3E-15 97.3 10.9 92 5-99 8-100 (116)
407 1g1c_A Immunoglobulin-like dom 99.2 3.3E-11 1.1E-15 94.5 10.2 89 113-228 5-94 (99)
408 2ed8_A Netrin receptor DCC; tu 99.2 4.7E-11 1.6E-15 95.0 11.1 89 9-101 3-92 (106)
409 1i1r_A GP130, interleukin-6 re 99.2 5E-11 1.7E-15 114.3 13.4 86 11-98 101-187 (303)
410 3bn9_D E2 FAB heavy chain; ant 99.2 2.3E-10 7.9E-15 106.7 17.3 126 278-440 77-222 (257)
411 2dn7_A Receptor-type tyrosine- 99.2 4.1E-11 1.4E-15 95.5 10.5 90 8-100 2-92 (107)
412 2lvc_A Obscurin-like protein 1 99.2 1.7E-11 5.9E-16 94.3 7.8 78 113-218 4-83 (91)
413 3grw_A Fibroblast growth facto 99.2 3.6E-11 1.2E-15 110.9 11.5 171 25-230 28-216 (241)
414 3irg_A Titin; IG-like, titin, 99.2 4.6E-11 1.6E-15 93.7 10.5 90 113-229 5-96 (100)
415 3t04_D Monobody 7C12; engineer 99.2 1.3E-10 4.4E-15 91.9 13.1 86 11-97 5-93 (103)
416 2kdg_A Myotilin; immonoglobuli 99.2 7.1E-11 2.4E-15 92.7 11.6 87 362-449 12-99 (100)
417 1gxe_A Myosin binding protein 99.2 2.6E-11 9E-16 101.3 9.5 86 361-447 24-138 (139)
418 3nl4_H Antigen binding fragmen 99.2 4.8E-11 1.6E-15 108.2 12.0 176 120-311 5-209 (215)
419 2vol_A Murine IGG FC; FC, zinc 99.2 1.4E-11 4.7E-16 111.2 8.2 122 281-438 69-198 (207)
420 1uct_A Immunoglobulin alpha FC 99.2 5.3E-11 1.8E-15 108.3 12.2 155 25-219 21-180 (218)
421 2j6e_L IGM, FAB light chain; a 99.2 1.9E-11 6.4E-16 112.4 9.1 160 121-309 26-228 (234)
422 4frw_A Poliovirus receptor-rel 99.2 8.3E-11 2.9E-15 106.1 13.1 127 69-226 78-205 (218)
423 2dlh_A Receptor-type tyrosine- 99.2 1.8E-11 6.2E-16 100.0 7.7 98 2-102 6-108 (121)
424 3irg_A Titin; IG-like, titin, 99.2 1.5E-10 5.2E-15 90.7 12.8 86 362-448 12-99 (100)
425 1u2h_A APEG-1, aortic preferen 99.2 1.2E-10 4E-15 91.3 12.0 86 362-448 12-98 (99)
426 3qht_C Monobody YSMB-1; fibron 99.2 5.3E-11 1.8E-15 93.0 9.9 85 12-100 3-88 (97)
427 1wit_A Twitchin 18TH IGSF modu 99.2 5.4E-11 1.8E-15 92.1 9.8 83 362-447 9-93 (93)
428 3bqu_C 3H6 FAB light chain; be 99.2 2.2E-12 7.4E-17 118.6 2.0 163 236-437 33-224 (233)
429 1nct_A Titin; cell adhesion, g 99.2 2.5E-11 8.7E-16 96.6 7.9 90 112-228 13-102 (106)
430 3juy_B 3B3 single chain varian 99.2 3.9E-10 1.3E-14 105.2 17.3 124 68-219 83-243 (256)
431 2dm3_A KIAA0992 protein, palla 99.2 2.2E-11 7.4E-16 97.6 7.5 91 362-453 16-107 (110)
432 2vr9_A Roundabout 1, ROBO; imm 99.2 2.3E-11 7.9E-16 110.3 8.6 119 73-225 72-199 (217)
433 1dee_B IGM RF 2A2; FAB-IBP com 99.2 1.5E-09 5.2E-14 98.9 20.7 169 235-441 9-220 (223)
434 2gys_A Cytokine receptor commo 99.2 2.9E-09 1E-13 106.9 24.5 98 12-110 107-214 (419)
435 1x4y_A Biregional cell adhesio 99.2 1.2E-10 4.2E-15 94.0 11.7 92 11-102 6-101 (114)
436 3b83_A Ten-D3; beta sheet, com 99.2 5.1E-11 1.7E-15 93.7 9.1 82 13-99 1-84 (100)
437 3bqu_C 3H6 FAB light chain; be 99.2 5.8E-12 2E-16 115.8 4.2 158 119-305 28-224 (233)
438 3irg_B Obscurin-like protein 1 99.2 5.5E-11 1.9E-15 94.7 9.4 90 112-228 12-101 (107)
439 2bk8_A Connectin, M1, titin he 99.2 1.7E-10 5.9E-15 90.0 12.0 84 119-228 6-90 (97)
440 1he7_A High affinity nerve gro 99.2 6.8E-11 2.3E-15 96.1 9.9 84 369-453 14-104 (126)
441 2fbj_H IGA-kappa J539 FAB (hea 99.2 4.2E-10 1.5E-14 102.3 16.5 158 121-307 7-212 (220)
442 2cum_A Tenascin-X; hexabrachio 99.2 1.1E-10 3.7E-15 92.6 10.9 84 10-98 4-87 (105)
443 3bae_H WO2 IGG2A FAB fragment 99.2 1.9E-10 6.4E-15 105.4 14.1 157 121-307 7-217 (228)
444 3l5i_A Interleukin-6 receptor 99.2 3.3E-10 1.1E-14 107.7 16.2 172 284-496 65-243 (290)
445 3qib_D 2B4 beta chain; IG doma 99.2 6.5E-11 2.2E-15 111.4 11.1 186 78-307 4-246 (270)
446 1gxe_A Myosin binding protein 99.2 9.8E-11 3.3E-15 97.8 10.9 85 119-229 23-136 (139)
447 1dee_B IGM RF 2A2; FAB-IBP com 99.2 2.4E-10 8.3E-15 104.2 14.5 159 121-308 7-219 (223)
448 3kvq_A Vascular endothelial gr 99.2 7.7E-11 2.6E-15 94.0 9.9 89 362-453 17-105 (108)
449 2ee3_A Collagen alpha-1(XX) ch 99.2 7.1E-11 2.4E-15 93.9 9.5 87 10-100 4-90 (108)
450 1dn0_B IGM-kappa cold agglutin 99.2 1.2E-10 4E-15 107.1 12.4 166 120-314 6-225 (232)
451 1wwb_X Protein (brain derived 99.2 9.5E-11 3.2E-15 92.7 10.1 83 368-451 14-101 (103)
452 2kdg_A Myotilin; immonoglobuli 99.2 7.7E-11 2.6E-15 92.5 9.5 90 113-229 5-95 (100)
453 1u2h_A APEG-1, aortic preferen 99.2 8.3E-11 2.8E-15 92.2 9.6 89 113-228 5-94 (99)
454 2ckn_A Basic fibroblast growth 99.2 1.3E-10 4.5E-15 90.3 10.6 85 112-228 8-92 (95)
455 2ede_A Netrin receptor DCC; tu 99.2 2.6E-10 9E-15 91.9 12.4 92 9-102 3-101 (114)
456 1nct_A Titin; cell adhesion, g 99.2 3.5E-11 1.2E-15 95.8 7.1 86 361-447 20-105 (106)
457 1x5j_A Neogenin; RGM binding, 99.2 1.9E-10 6.3E-15 92.6 11.4 93 10-104 5-102 (113)
458 1dn0_B IGM-kappa cold agglutin 99.2 7.1E-10 2.4E-14 101.8 16.8 176 236-448 10-227 (232)
459 3ojm_B Fibroblast growth facto 99.2 1.3E-10 4.6E-15 106.0 11.9 133 68-229 74-218 (231)
460 2v9r_A Roundabout homolog 1; p 99.2 7.1E-11 2.4E-15 106.4 9.8 118 72-223 74-192 (212)
461 3e0g_A Leukemia inhibitory fac 99.2 6.9E-09 2.3E-13 104.5 25.2 215 234-496 206-426 (483)
462 2dav_A SLOW MYBP-C, myosin-bin 99.2 5.4E-11 1.8E-15 96.8 8.0 93 360-453 12-117 (126)
463 1x44_A Myosin-binding protein 99.2 2.5E-10 8.6E-15 90.2 11.8 87 361-453 13-101 (103)
464 1waa_A Titin; metal binding pr 99.2 2.5E-10 8.4E-15 88.3 11.3 82 361-448 11-92 (93)
465 2dm2_A Palladin; beta-sandwich 99.2 2E-10 6.7E-15 92.0 11.1 88 112-226 7-96 (110)
466 1oll_A NK receptor; immune sys 99.2 1.3E-10 4.4E-15 103.0 11.0 118 68-219 55-172 (188)
467 3qhz_H Human monoclonal antibo 99.2 7.7E-10 2.6E-14 101.5 16.3 128 278-446 81-227 (232)
468 3nl4_H Antigen binding fragmen 99.2 1.3E-10 4.3E-15 105.4 10.7 173 235-444 8-210 (215)
469 2yuz_A Myosin-binding protein 99.2 2.1E-10 7.2E-15 90.1 10.6 77 113-218 7-83 (100)
470 3sbw_C Programmed cell death 1 99.2 3.5E-10 1.2E-14 102.7 13.7 170 120-319 7-214 (222)
471 2db8_A Tripartite motif protei 99.2 1.2E-10 4.3E-15 93.2 9.4 88 11-101 7-96 (110)
472 2q7n_A Leukemia inhibitory fac 99.1 1.6E-08 5.5E-13 102.5 26.8 120 362-493 210-331 (488)
473 2xqy_G A13-D6.3 monoclonal ant 99.1 3E-10 1E-14 106.3 13.0 164 237-439 17-216 (261)
474 2kkq_A Myotilin; unknown funct 99.1 3.7E-10 1.3E-14 91.4 11.7 90 112-228 14-105 (116)
475 3k2m_C Monobody HA4; engineere 99.1 3.4E-10 1.2E-14 89.1 11.0 81 13-95 4-85 (101)
476 1hng_A CD2; T lymphocyte adhes 99.1 9.3E-11 3.2E-15 102.7 8.6 112 69-227 60-171 (176)
477 1fhg_A Telokin; immunoglobulin 99.1 5.8E-10 2E-14 95.3 13.3 90 362-452 48-138 (154)
478 2edd_A Netrin receptor DCC; tu 99.1 5.2E-10 1.8E-14 91.5 12.3 88 10-101 15-109 (123)
479 3qwq_B Adnectin; cell surface 99.1 2.1E-10 7.1E-15 92.3 9.7 80 11-94 1-81 (114)
480 2e6p_A Obscurin-like protein 1 99.1 1.8E-10 6.3E-15 91.1 9.3 83 365-453 20-102 (104)
481 3o3u_N Maltose-binding peripla 99.1 9.9E-11 3.4E-15 123.0 10.0 160 236-437 376-566 (581)
482 3lb6_C IL-13, interleukin-13 r 99.1 1.9E-09 6.6E-14 106.5 18.6 94 11-108 29-130 (380)
483 2rb8_A Tenascin; beta sheet,lo 99.1 3.1E-10 1.1E-14 89.8 10.2 81 13-98 2-84 (104)
484 2ocf_D Fibronectin; estrogen r 99.1 1.7E-10 5.7E-15 94.0 8.8 86 11-100 26-112 (121)
485 2edf_A Obscurin; beta-sandwich 99.1 2E-10 6.8E-15 90.8 9.0 87 361-453 14-100 (103)
486 2eny_A Obscurin; beta-sandwich 99.1 1.5E-10 5E-15 91.7 8.0 78 113-217 8-86 (104)
487 1qr4_A Protein (tenascin); fib 99.1 1.1E-09 3.8E-14 96.6 14.6 131 317-496 6-136 (186)
488 2rgs_A I, IG gamma-2B heavy ch 99.1 1.3E-10 4.6E-15 105.5 8.8 152 126-306 23-206 (218)
489 2dlt_A Myosin binding protein 99.1 2.2E-10 7.6E-15 91.0 9.0 80 112-219 7-86 (106)
490 2edj_A Roundabout homolog 2; K 99.1 2.7E-10 9.1E-15 89.5 9.3 86 112-227 7-93 (100)
491 1c5d_H Monoclonal antibody aga 99.1 9.9E-10 3.4E-14 99.5 14.4 166 236-442 10-210 (215)
492 2lvc_A Obscurin-like protein 1 99.1 2.9E-10 1E-14 87.4 9.2 76 365-446 16-91 (91)
493 3teu_A Fibcon; FN3 domain, fib 99.1 4.9E-10 1.7E-14 87.6 10.6 82 13-98 1-83 (98)
494 2dmk_A Midline 2 isoform 2; mi 99.1 7.7E-10 2.6E-14 91.1 12.2 83 9-96 11-106 (127)
495 2edj_A Roundabout homolog 2; K 99.1 3.3E-10 1.1E-14 88.9 9.5 85 362-450 15-100 (100)
496 3s98_A Interferon alpha/beta r 99.1 2.5E-09 8.5E-14 102.5 17.4 83 12-98 2-88 (306)
497 1x5a_A Ephrin type-A receptor 99.1 1.3E-09 4.3E-14 86.8 12.8 91 7-103 3-95 (107)
498 3s96_B 3B5H10 FAB light chain; 99.1 2.6E-10 8.8E-15 103.3 9.9 131 67-225 72-213 (218)
499 2eny_A Obscurin; beta-sandwich 99.1 4.5E-10 1.5E-14 88.9 9.9 88 361-453 14-102 (104)
500 2e6p_A Obscurin-like protein 1 99.1 4.7E-10 1.6E-14 88.7 10.0 71 124-221 20-90 (104)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.9e-34 Score=300.49 Aligned_cols=334 Identities=19% Similarity=0.251 Sum_probs=264.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 155 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~pp~~~-~~p~~~~v~~G~~~~l~C~~~-------- 222 (570)
T 3b43_A 155 NVATLQILQTDQSHVGQYNCSASNPLGTASS---SAKLTLSEHEVPPFFD-LKPVSVDLALGESGTFKCHVT-------- 222 (570)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEECCCCCCEEE-ECCCCBCCBSBSCEEEEEEEE--------
T ss_pred CEEEEEECcCChHHCEEEEEEEEeCCcEEEE---EEEEEEcCCCCCCccc-cCCceeEecCCCeEEEEEEEE--------
Confidence 4568999999999999999999998875432 2223333334566665 455667788999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.++|++++..+....++.+........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 223 ------------------g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 284 (570)
T 3b43_A 223 ------------------GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ 284 (570)
T ss_dssp ------------------SSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------ECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEE
Confidence 99999999999999998888887776677789999999999999999999999998776665
Q ss_pred eecee---ee-----eccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 228 VTGTE---FT-----DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 228 ~~~~~---~~-----~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
+.+.. +. ...+..|....+.|.+ .|.|.|.+.|.+. ......+........|.|.++..+|+|.
T Consensus 285 l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 361 (570)
T 3b43_A 285 LGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 361 (570)
T ss_dssp ECCBCCCEEEECCCSBCCEESSCEEEEEEEE---ESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEE
T ss_pred EEeecCCcccccCCCccEEcCCCcEEEEEEE---eeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEE
Confidence 44322 11 1235689999999998 7899999999652 2334445555667889999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.|.|..|.....+.|.|..+|.... .+....+..|+.+.
T Consensus 362 Y~C~a~N~~g~~~~~~~l~V~~~P~~~~--------------------------------------~~~~~~~~~G~~v~ 403 (570)
T 3b43_A 362 YTCEAHNAAGSASSSTSLKVKEPPVFRK--------------------------------------KPHPVETLKGADVH 403 (570)
T ss_dssp EEEEEEBTTBCCEEEEEECEECCCEECS--------------------------------------CCCCEEECTTCCEE
T ss_pred EEEEEEeCCCEEEEEEEEEecCCCeeec--------------------------------------CCCceeecCCCEEE
Confidence 9999999999998888888887654321 12345678899999
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~ 454 (516)
|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++.. .|.|.|+|.|.|..|.....+.|.|..+|....
T Consensus 404 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~ 482 (570)
T 3b43_A 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK 482 (570)
T ss_dssp EEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEECCCCEEEE
T ss_pred EEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hhCEEEEEEEEECCCeEEEEEEEEeccCCcccc
Confidence 9999999999999999999999888888887777778899999999 999999999999999999889999987664221
Q ss_pred CCcccccccCCeEEEEeeC
Q psy7039 455 GPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 455 ~~l~~~~~~~~~~~l~W~~ 473 (516)
....+....++.+.|.+..
T Consensus 483 ~~~~~~~~~g~~~~l~c~~ 501 (570)
T 3b43_A 483 KLSDISTVVGEEVQLQATI 501 (570)
T ss_dssp CCCCBCCBTTCCEEEEEEE
T ss_pred cCCCceecCCCeEEEEEEE
Confidence 1112333445666666653
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.6e-33 Score=294.99 Aligned_cols=335 Identities=21% Similarity=0.291 Sum_probs=261.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+..+.+.+|+++.|.|.+.
T Consensus 59 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~---~~~l~v~~~~~~p~~~-~~~~~~~~~~G~~v~l~C~~~-------- 126 (570)
T 3b43_A 59 NVASLVINKVDHSDVGEYTCKAENSVGAVAS---SAVLVIKERKLPPSFA-RKLKDVHETLGFPVAFECRIN-------- 126 (570)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEECCCCCCCEES-SCCCCEEEETTSCEEEEEEEE--------
T ss_pred CEEEEEEccCChhhCEEEEEEEEeCCceEEE---EEEEEECCCCCCCccc-ccCCCeEecCCCeEEEEEEEc--------
Confidence 3568999999999999999999998875432 2223344444567766 566778889999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
|.|.+.+.|++++..+....++..........|.|.++..+|+|.|+|.+.|..|.......
T Consensus 127 ------------------g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 188 (570)
T 3b43_A 127 ------------------GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK 188 (570)
T ss_dssp ------------------SSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------cCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEE
Confidence 99999999999999988776666555566789999999999999999999999887765543
Q ss_pred eece------ee----eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCc
Q psy7039 228 VTGT------EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 228 ~~~~------~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
+... .+ ....+.+|+.+.|.|.+ .|.|+|.++|.+. .+....+........|.|.++..+|+
T Consensus 189 l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~---~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~ 265 (570)
T 3b43_A 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHV---TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDA 265 (570)
T ss_dssp EEEECCCCCCEEEECCCCBCCBSBSCEEEEEEE---ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGC
T ss_pred EEEcCCCCCCccccCCceeEecCCCeEEEEEEE---EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccC
Confidence 3221 11 12346789999999998 7889999999652 23444555556678999999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|..|..+.++.|.|..+|..... ......+..|+.
T Consensus 266 G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~-------------------------------------~~~~~~v~~g~~ 308 (570)
T 3b43_A 266 GQYTCYASNVAGKDSCSAQLGVQEPPRFIKK-------------------------------------LEPSRIVKQDEH 308 (570)
T ss_dssp EEEEEEEEETTEEEEEEEEECCBCCCEEEEC-------------------------------------CCSBCCEESSCE
T ss_pred EEEEEEEECCCCcEEEEEEEEeecCCccccc-------------------------------------CCCccEEcCCCc
Confidence 9999999999999888888887665432100 112234678999
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|..
T Consensus 309 ~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~ 387 (570)
T 3b43_A 309 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV-EDSGDYTCEAHNAAGSASSSTSLKVKEPPVF 387 (570)
T ss_dssp EEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCG-GGCEEEEEEEEBTTBCCEEEEEECEECCCEE
T ss_pred EEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCc-ccCEEEEEEEEeCCCEEEEEEEEEecCCCee
Confidence 999999999999999999999999888888777767778899999999 9999999999999999999999999877642
Q ss_pred CCCCcccccccCCeEEEEeeC
Q psy7039 453 PQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 453 P~~~l~~~~~~~~~~~l~W~~ 473 (516)
...+..+....+..+.|.++.
T Consensus 388 ~~~~~~~~~~~G~~v~l~C~~ 408 (570)
T 3b43_A 388 RKKPHPVETLKGADVHLECEL 408 (570)
T ss_dssp CSCCCCEEECTTCCEEEEEEE
T ss_pred ecCCCceeecCCCEEEEEEEE
Confidence 212222333456667777653
No 3
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=4.2e-31 Score=264.52 Aligned_cols=306 Identities=20% Similarity=0.249 Sum_probs=233.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeecc-----CCceEEeecC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQI-----GGRADVQTTK 193 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~ 193 (516)
+.+..+.+|+.+.|.|.+. |.|.+.+.|+++ +..+.. ..++.+....
T Consensus 7 ~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~ 60 (389)
T 2jll_A 7 LKNETTYENGQVTLVCDAE--------------------------GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60 (389)
T ss_dssp CCCEEEETTSEEEEEEEEE--------------------------CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECS
T ss_pred cCceEEeCCCeEEEEEEee--------------------------cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccC
Confidence 4567788899999999999 999999999999 887764 4677776666
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
....|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|+.+.|.|.+ .|.|.|.+.|.+.
T Consensus 61 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~i~W~~~ 137 (389)
T 2jll_A 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV---KSNPPASIHWRRD 137 (389)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE---EEESCCEEEEEET
T ss_pred CcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE---EecCCCeEEEEEC
Confidence 7889999999999999999999999998766655444321 12245789999999988 7889999999652
Q ss_pred c-------cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEe
Q psy7039 267 I-------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339 (516)
Q Consensus 267 ~-------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W 339 (516)
. ..++.+........|.|.++...|+|.|+|.|.|..|.......+.+...|.+|.. +.+.......+.|+|
T Consensus 138 g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w 216 (389)
T 2jll_A 138 KLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSF 216 (389)
T ss_dssp TEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEE-EEEEEECSSCEEEEE
T ss_pred CccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcc-eEEeeccCCEEEEEE
Confidence 1 12444555566778999999999999999999999999888888888776665533 667777889999999
Q ss_pred cCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce
Q psy7039 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK 419 (516)
Q Consensus 340 ~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~ 419 (516)
.+|..++|.++.+| .+.|.+++... -...........+.|.++.
T Consensus 217 ~~p~~~~g~pi~~y--------------------------------~v~~~~~~~~~----~~~~~~~~~~~~~~i~~l~ 260 (389)
T 2jll_A 217 NKPDSHGGVPIHHY--------------------------------QVDVKEVASEI----WKIVRSHGVQTMVVLNNLE 260 (389)
T ss_dssp ECCSCCTTSCEEEE--------------------------------EEEEEETTCSC----CEEEECSTTCSEEEECSCC
T ss_pred eCCCCCCCcceEEE--------------------------------EEEEEECCCcc----cEEeeccCCcceEEECCcc
Confidence 99988888888777 24666555311 1122223344579999999
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEEec----CCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD----KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v~~----~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
+ .+.|.|+|.|.|..|.+..+..+.+.. +|.+| .+.....+.+++.|+|++|. +++++|.+|.|+|+..+..
T Consensus 261 ~-~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p--~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~ 336 (389)
T 2jll_A 261 P-NTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP--SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKE 336 (389)
T ss_dssp T-TCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCC--CEEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC----
T ss_pred C-CCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCC--ccccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCC
Confidence 9 999999999999999876555555554 34444 35556678899999999875 7788999999999986554
Q ss_pred c
Q psy7039 496 V 496 (516)
Q Consensus 496 ~ 496 (516)
.
T Consensus 337 ~ 337 (389)
T 2jll_A 337 D 337 (389)
T ss_dssp -
T ss_pred c
Confidence 4
No 4
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.98 E-value=5.6e-30 Score=244.80 Aligned_cols=267 Identities=19% Similarity=0.263 Sum_probs=222.7
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 4 ~pP~~~-~~p~~~~~~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 56 (284)
T 2rik_A 4 APPFFD-LKPVSVDLALGESGTFKCHVT--------------------------GTAPIKITWAKDNREIRPGGNYKMTL 56 (284)
T ss_dssp CCCEEE-ECCCCEEEETTCCEEEEEEEE--------------------------SSSCCEEEEEETTEECCSSSSEEEEE
T ss_pred CCCEEE-ccccceEecCCCcEEEEEEEE--------------------------cCCCCEEEEEECCEECcCCCcEEEEE
Confidence 467666 566778999999999999999 88999999999999998888887777
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e-----eeccccCCceEEEEEEEEccCCCCCceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W 263 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+.+.. + ....+..|+.+.+.|.+ .|.|.+.+.|
T Consensus 57 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~~~v~W 133 (284)
T 2rik_A 57 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSPEIKVLW 133 (284)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEE---ESSSCCEEEE
T ss_pred cCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEE---eeeCCCEEEE
Confidence 77788999999999999999999999888766555443321 1 12236789999999998 6889999999
Q ss_pred ccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 264 DAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 264 ~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.+. ...............|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~--------------- 198 (284)
T 2rik_A 134 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK--------------- 198 (284)
T ss_dssp EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSC---------------
T ss_pred EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeC---------------
Confidence 652 233444555667789999999999999999999999998888888888876644322
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~ 418 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++
T Consensus 199 -----------------------~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 255 (284)
T 2rik_A 199 -----------------------PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNV 255 (284)
T ss_dssp -----------------------CCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSC
T ss_pred -----------------------CCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCC
Confidence 234567899999999999999999999999999998888888877777789999999
Q ss_pred eecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 419 KRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.. .|.|.|+|.|.|..|....++.|.|+
T Consensus 256 ~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 256 DS-ADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp CG-GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred Cc-ccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99 99999999999999999988888875
No 5
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.97 E-value=3.9e-30 Score=257.22 Aligned_cols=302 Identities=22% Similarity=0.251 Sum_probs=222.1
Q ss_pred CcEEEeCCC-cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGL-IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l-~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..++.|.+. +..|.|.|+|.|.|..|........+.+... +.+.......+.+.+|+.+.|.|....
T Consensus 61 ~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~-----~~~~~~~~~~~~v~~G~~~~l~C~~~~------- 128 (384)
T 3kld_A 61 DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL-----ENFKTRTRSTVSVRRGQGMVLLCGPPP------- 128 (384)
T ss_dssp TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEE-----CCCSCCCCCCEEEEETCCEEECCCCCS-------
T ss_pred CCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecc-----cccccCCCCceeEEcCCCeEEecCCCC-------
Confidence 345667665 7889999999999988764322222222211 112213345578999999999997651
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE-
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA- 226 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~- 226 (516)
+.+.+.+.|++++..+....+..+. .....|.|.+++.+|+|.|+|.+.|..+......
T Consensus 129 ------------------~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 188 (384)
T 3kld_A 129 ------------------HSGELSYAWIFNEYPSYQDNRRFVS--QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188 (384)
T ss_dssp ------------------EESCEEEEEEETTEECCCSSSEEEC--TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECC
T ss_pred ------------------CCCCeEEEEEECCCCCEeeccEEEE--cCCCcEEEeecCHHHCceEEEEEecccccceeeCC
Confidence 4567899999999887655444332 2345799999999999999999999876543210
Q ss_pred ----Eee--------ceee-----eeccccCCceEEEEEEEEccCCCCCceecccccccceE--EEEEecceeeEEEccC
Q psy7039 227 ----HVT--------GTEF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI--KEFVTSTTASLNIKNS 287 (516)
Q Consensus 227 ----~~~--------~~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~--~~~~~~~~~~l~i~~l 287 (516)
.+. ...+ ....+.+|+.+.|.|.+ .|.|.|.+.|.+..+... ........+.|.|.++
T Consensus 189 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v 265 (384)
T 3kld_A 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA---LGNPVPTILWRRADGKPIARKARRHKSNGILEIPNF 265 (384)
T ss_dssp CEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE---EEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSC
T ss_pred ceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE---eecCCCcEEEEeCCCccccccceecCCCcEEEECCC
Confidence 000 0000 12345689999999998 788999999975332211 1122345678999999
Q ss_pred CCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
..+|+|.|+|.|.|..|.......|.|...|... ..+.+..+
T Consensus 266 ~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~--------------------------------------~~~~~~~v 307 (384)
T 3kld_A 266 QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWV--------------------------------------QIINDIHV 307 (384)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEE--------------------------------------ECCCCEEE
T ss_pred ChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccc--------------------------------------cCCCceEe
Confidence 9999999999999999998888888887655321 12244678
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
..|+.+.|.|.+.|.|.|.+.|++++..+....++.+. . ..|.|.++.. .|+|.|+|.|.|..|....++.|.|.
T Consensus 308 ~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--~--~~L~i~~v~~-~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 308 AMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE--Q--GTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp CTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE--T--TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe--C--CEEEEeecCh-hhCEEEEEEEEeCCceEEeceEEEEe
Confidence 89999999999999999999999999998777776653 2 2699999999 99999999999999999999999885
Q ss_pred c
Q psy7039 448 D 448 (516)
Q Consensus 448 ~ 448 (516)
.
T Consensus 383 ~ 383 (384)
T 3kld_A 383 A 383 (384)
T ss_dssp -
T ss_pred c
Confidence 3
No 6
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.97 E-value=1.3e-29 Score=254.86 Aligned_cols=303 Identities=20% Similarity=0.222 Sum_probs=223.0
Q ss_pred CCcEEEeCCC-----cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 68 GETSCTVPGL-----IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 68 ~~~~~~i~~l-----~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
...++.|.++ +..|.|.|+|.|.|..+....+ ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 75 ~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s-~~~~l~v~---~p~~~~-~~~~~~~~~~G~~v~l~C~~~--- 146 (403)
T 3laf_A 75 PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIIS-RTAKVMVA---GPLRFL-SQTESITAFMGDTVLLKCEVI--- 146 (403)
T ss_dssp TTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEEC-CCEEEEEC---CCCEEC-SCCCCEEEETTSCEEECCCEE---
T ss_pred cCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEE-EEEEEEec---CCCccc-cCCCcEEEEcCCeEEEEEEEc---
Confidence 3556777777 6789999999998643322212 22223332 255555 566778999999999999999
Q ss_pred ccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC---CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG---GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.+.|++++..+... .+... .....|.|.+++.+|+|.|+|.+.|..
T Consensus 147 -----------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 147 -----------------------GDPMPTIHWQKNQQDLNPIPGDSRVVV---LPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp -----------------------CSSCCEEEEEESSSBCCCCTTCCSEEE---CTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred -----------------------ccCCCeEEEEECCEeccccCCceEEEE---cCCceEEEcccccccCEEEEEEEEcCC
Confidence 8999999999998877432 22222 233489999999999999999999977
Q ss_pred CceE---EEEEeece-------ee----eeccccCCceEEEEEEEEccCCCCCceecccccccc---eEEEEEecceeeE
Q psy7039 220 GTAT---ASAHVTGT-------EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK---RIKEFVTSTTASL 282 (516)
Q Consensus 220 g~~~---~~~~~~~~-------~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~---~~~~~~~~~~~~l 282 (516)
+... ..+.+... .+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... ............|
T Consensus 201 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L 277 (403)
T 3laf_A 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV---SGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL 277 (403)
T ss_dssp CCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEE---EEESCCEEEEEETTEECCCSSSSEEEETTTEE
T ss_pred CceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEc---CCCCCCeEEEEECCeeccCCCceEEECCccEE
Confidence 6532 22221110 11 12345689999999998 6788999999652110 0000111234679
Q ss_pred EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 283 ~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.... .+
T Consensus 278 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--------------------------------------~~ 319 (403)
T 3laf_A 278 LISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN--------------------------------------HP 319 (403)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--------------------------------------CC
T ss_pred EEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEee--------------------------------------cC
Confidence 9999999999999999999999888888888876553211 12
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.. ...|.|.++.. .|.|.|+|.|.|..|....++
T Consensus 320 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~---~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~ 395 (403)
T 3laf_A 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVK-SDEGFYQCVAENEAGNAQSSA 395 (403)
T ss_dssp CCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEET---TTEEEESSCCG-GGCEEEEEEEEETTEEEEEEE
T ss_pred cceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEec---CccEEEecccc-ccCEEEEEEEEcCCceEEEEE
Confidence 34567889999999999999999999999999887666665542 24699999999 999999999999999999999
Q ss_pred EEEEecC
Q psy7039 443 KVYVVDK 449 (516)
Q Consensus 443 ~l~v~~~ 449 (516)
.|.|..+
T Consensus 396 ~l~V~~P 402 (403)
T 3laf_A 396 QLIVPKP 402 (403)
T ss_dssp EEECCCC
T ss_pred EEEEeCC
Confidence 9988764
No 7
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.97 E-value=1.4e-29 Score=252.95 Aligned_cols=300 Identities=23% Similarity=0.277 Sum_probs=222.2
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...|.|.++.. .|.|.|+|.|.|..|........+.+.. .|.+.......+.+.+|+.+.|.|...+
T Consensus 60 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~-----~~~~~~~~~~~~~v~~G~~v~l~C~~~~------- 127 (382)
T 1cs6_A 60 AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-----LQEFSAEERDPVKITEGWGVMFTCSPPP------- 127 (382)
T ss_dssp TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE-----ECCCCSSCCCCEEEETTSCEEECCCCCS-------
T ss_pred CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeec-----cccccccCCCceEEecCCcEEEEeCCCC-------
Confidence 45799999886 9999999999998775432222222222 1222223456688999999999998641
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.. ..+..+ ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 128 ------------------~~p~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 187 (382)
T 1cs6_A 128 ------------------HYPALSYRWLLNEFPNFIPADGRRFV--SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187 (382)
T ss_dssp ------------------EESCCEEEEEESSTTCBCCCCSSEEE--CTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred ------------------CCCCcEEEEEECCCccccccCceEEE--ecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence 568889999998876532 233322 3344689999999999999999999877543222
Q ss_pred E-------Eee-------ceee-----eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEcc
Q psy7039 226 A-------HVT-------GTEF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKN 286 (516)
Q Consensus 226 ~-------~~~-------~~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~ 286 (516)
. .+. ...+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+..+... .........|.|.+
T Consensus 188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~~~~~~-~~~~~~~~~L~i~~ 263 (382)
T 1cs6_A 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA---FGNPVPQIKWRKLDGSQT-SKWLSSEPLLHIQN 263 (382)
T ss_dssp EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE---EEESCCEEEEEECCSCCS-CCCSBSSSEEEECS
T ss_pred eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE---ccCCCCEEEEEECCcccc-cEEecCCcEEEEcc
Confidence 1 110 0111 13346689999999998 677899999965332211 02234567899999
Q ss_pred CCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEE
Q psy7039 287 SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~ 366 (516)
+..+|.|.|+|.|.|..|.....+.|.|..+|.... .+....
T Consensus 264 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~--------------------------------------~~~~~~ 305 (382)
T 1cs6_A 264 VDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--------------------------------------VITDTE 305 (382)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEE--------------------------------------CCCCEE
T ss_pred CChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCccc--------------------------------------CCCccE
Confidence 999999999999999999888888888876553211 123467
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+.. ..|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 306 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V 380 (382)
T 1cs6_A 306 ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTV 380 (382)
T ss_dssp EETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEEC----CEEEECcCCc-ccCEEEEEEEEeCCCeEEEEEEEEE
Confidence 8899999999999999999999999999987777766532 3699999999 9999999999999999999999888
Q ss_pred e
Q psy7039 447 V 447 (516)
Q Consensus 447 ~ 447 (516)
.
T Consensus 381 ~ 381 (382)
T 1cs6_A 381 Q 381 (382)
T ss_dssp E
T ss_pred e
Confidence 5
No 8
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.96 E-value=1.2e-26 Score=244.89 Aligned_cols=330 Identities=12% Similarity=0.113 Sum_probs=229.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 74 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~---~~~~l~V~---~~p~~~-~~~~~~~v~~G~~v~l~C~~~--------- 137 (585)
T 2ocw_A 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLS---FDVSLEVS---QGPGLL-NDTKVYTVDLGRTVTINCPFK--------- 137 (585)
T ss_pred EEEEEECCCCcccCEEEEEEcccCCCCce---EEEEEEEe---cCcccc-CCCccEEEEcCCCEEEEEEec---------
Confidence 45799999999999999999988766431 12222222 356665 667788899999999999998
Q ss_pred cccccccccCccceeecCc-CceeeEEeeCCeeec-------------cCCceEEeecCC---eeEEEeccCCCCCCeeE
Q psy7039 149 LRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQ-------------IGGRADVQTTKS---ETVLDIPFCSRSDTGHY 211 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~-------------~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y 211 (516)
+. +.+.+.|++++.... ...|+.+...+. ..+|.|.+++.+|+|.|
T Consensus 138 -----------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 200 (585)
T 2ocw_A 138 -----------------TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQY 200 (585)
T ss_pred -----------------CCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEE
Confidence 54 457799999875321 124455543332 34899999999999999
Q ss_pred EEEEEcCCCceEEEEEeecee--eeeccccCCceEEEEEEEEccCCC-CC-ceeccc-ccc-----------------cc
Q psy7039 212 SLTLENNLGTATASAHVTGTE--FTDNNVHEGKAYEYRVSAVNAAGT-EK-PKISLD-ALI-----------------GK 269 (516)
Q Consensus 212 ~c~~~~~~g~~~~~~~~~~~~--~~~~~l~~g~~~~~~~~~~~~~g~-p~-p~i~W~-~~~-----------------~~ 269 (516)
+|.+.|..|.......+.+.. .....+.+|..+.|.|.+ .+. +. +.+.|. +.. ..
T Consensus 201 ~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~---~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~ 277 (585)
T 2ocw_A 201 LCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL---GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG 277 (585)
T ss_pred EEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEc---CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCC
Confidence 999999888766555544432 223346789999999985 222 22 677885 321 11
Q ss_pred eEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcc----eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCC
Q psy7039 270 RIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDM----ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343 (516)
Q Consensus 270 ~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~----~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~ 343 (516)
++.+... .....|.|.++..+|+|.|+|.|.|..+... ..+.|.|...|..+.
T Consensus 278 ~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~--------------------- 336 (585)
T 2ocw_A 278 RILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR--------------------- 336 (585)
T ss_pred ceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEeccccccc---------------------
Confidence 2222111 2223799999999999999999999533332 677788877665432
Q ss_pred CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce----EEEE--CCe--ecC---------CCCceEEEE
Q psy7039 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP----IWTV--NGD--EVS---------PDGRIKFET 406 (516)
Q Consensus 344 ~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i----~W~~--~~~--~l~---------~~~~~~~~~ 406 (516)
.+....+..|+.+.|.|.+.+.|.+.+ .|++ ++. .+. ...++.+..
T Consensus 337 -----------------~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~ 399 (585)
T 2ocw_A 337 -----------------SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLE 399 (585)
T ss_pred -----------------CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEec
Confidence 234567889999999999999999976 7998 776 332 133444443
Q ss_pred c--CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCC
Q psy7039 407 S--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPP 474 (516)
Q Consensus 407 ~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p 474 (516)
. .+...|.|.++.. .|.|.|+|.| |..|..+..+.|.|...|.....+..+....++.+.|.|...
T Consensus 400 ~~~~g~~~L~I~~v~~-~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~ 467 (585)
T 2ocw_A 400 EPGNGTFTVILNQLTS-RDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFP 467 (585)
T ss_pred cCCCcEEEEEECCCCh-hhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEec
Confidence 2 2334699999999 9999999999 999998888899887543221122334445677888888653
No 9
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.96 E-value=2.9e-27 Score=252.56 Aligned_cols=319 Identities=14% Similarity=0.185 Sum_probs=229.7
Q ss_pred CCeeEEEecCCCCCCCCceeceEEEEEeCCCC--eEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 27 KDHVDLQWTPPISDGGSPITGYVVEMKDKTGN--WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 27 ~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
.+.+.|.+.... .+ ..+.|...+.. .............|.|.+++..|.|.|+|.|.|..|..... ...
T Consensus 304 g~~v~l~C~~~~----~p---~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~--~~~ 374 (642)
T 1e07_A 304 EDAVALTCEPEI----QN---TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD--PVI 374 (642)
T ss_pred CCcEEEEEECCC----CC---ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee--eEE
Confidence 455889888732 12 23445444431 11111122245789999999999999999999988754322 122
Q ss_pred eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC
Q psy7039 105 IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG 184 (516)
Q Consensus 105 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~ 184 (516)
+.+.. +|.+....+....+.+|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus 375 l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~--------------------------g~p~~~i~W~~~g~~~~~- 424 (642)
T 1e07_A 375 LNVLY---GPDDPTISPSYTYYRPGVNLSLSCHAA--------------------------SNPPAQYSWLIDGNIQQH- 424 (642)
T ss_pred EEEEc---CCCCCeecCCceEecCCCcEEEEEEcC--------------------------ccCCCeEEEEECCEEcCC-
Confidence 33322 222211334567789999999999999 999999999999987652
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE--Eeec------eee---eeccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA--HVTG------TEF---TDNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~--~~~~------~~~---~~~~l~~g~~~~~~~~~~~~ 253 (516)
...|.|.+++.+|+|.|+|.+.|..|....+. .+.. ..+ ....+.+|+.+.|.|.+
T Consensus 425 ----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~--- 491 (642)
T 1e07_A 425 ----------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP--- 491 (642)
T ss_pred ----------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEEC---
Confidence 24699999999999999999999987654332 1111 111 12346689999999998
Q ss_pred CCCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc-eeEEEEEecCCCCCCCCceeee
Q psy7039 254 AGTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTT 329 (516)
Q Consensus 254 ~g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~ 329 (516)
.+ +.+.+.|.+.. .....+........|.|.++...|+|.|+|.|.|..|... ..+.|.|...|..+..
T Consensus 492 ~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~------ 564 (642)
T 1e07_A 492 EA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPII------ 564 (642)
T ss_pred CC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCccee------
Confidence 43 78899996521 1111222334467899999999999999999999998754 3688888776543321
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..+
T Consensus 565 -------------------------------~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~---------- 603 (642)
T 1e07_A 565 -------------------------------SPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------- 603 (642)
T ss_pred -------------------------------cCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC----------
Confidence 124467889999999999999999999999999876432
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
..|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 604 -~~L~i~~~~~-~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 604 -QVLFIAKITP-NNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred -ceEEECcccc-cCCeEEEEEEEecccCcceeEEEEEE
Confidence 3699999999 99999999999999998888877775
No 10
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.96 E-value=1.2e-27 Score=249.16 Aligned_cols=334 Identities=15% Similarity=0.119 Sum_probs=241.1
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
.....+.|.+... + .+.|...+.... .......|.|.+++..|.|.|+|.|.| |. .....
T Consensus 49 ~~G~~v~l~C~~~---~-------~v~W~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~----~~~~~ 108 (524)
T 2ec8_A 49 RVGDEIRLLCTDP---G-------FVKWTFEILDET----NENKQNEWITEKAEATNTGKYTCTNKH--GL----SNSIY 108 (524)
T ss_dssp CTTSCEEEEEECT---T-------EEEEEEESSSCC----EEECSSEEEESSCCSTTCEEEEEEETT--SC----EEEEE
T ss_pred eCCCeEEEEEeCC---c-------eEEEcCCCcccc----ccCccceEEEcccchhhCEEEEEeecC--Cc----ceEEE
Confidence 4566788888762 1 455555444221 223678999999999999999999988 42 12333
Q ss_pred eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeecc
Q psy7039 105 IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQI 183 (516)
Q Consensus 105 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~ 183 (516)
+.+. .+|.+. ..+..+.+.+|+.+.|.|.+. +.+.+.+.|++ ++..+..
T Consensus 109 l~V~---~p~~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~~~~~v~W~~~~g~~l~~ 158 (524)
T 2ec8_A 109 VFVR---DPAKLF-LVDRSLYGKEDNDTLVRCPLT--------------------------DPEVTNYSLKGCQGKPLPK 158 (524)
T ss_dssp EECC---CSSCSB-CCCCCCCEETTSCEEECCCBS--------------------------CCCCSCEEEECSSSCCCCS
T ss_pred EEEC---CCCccc-ccccceEEEcCCeEEEECcCC--------------------------CCccceEEEEccCCcCcCC
Confidence 3333 234443 556678889999999999999 77779999987 7877776
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEE-EEEeec-------eee----eeccccCCceEEEEEEE
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATA-SAHVTG-------TEF----TDNNVHEGKAYEYRVSA 250 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~-~~~~~~-------~~~----~~~~l~~g~~~~~~~~~ 250 (516)
..++.+.. ...|.|.+++.+|+| .|+|.+.|..+.... ...+.+ ..+ ....+.+|+.+.+.|.+
T Consensus 159 ~~~~~~~~---~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~ 235 (524)
T 2ec8_A 159 DLRFIPDP---KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTI 235 (524)
T ss_dssp SCEEEEET---TTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEE
T ss_pred CCceeECC---CccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEE
Confidence 66665543 347999999999999 999999987665422 222221 112 12357789999999999
Q ss_pred EccCCCCCce-ecccccccc---eE--EEEE-----ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 251 VNAAGTEKPK-ISLDALIGK---RI--KEFV-----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 251 ~~~~g~p~p~-i~W~~~~~~---~~--~~~~-----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.|.|.|. +.|.+.... .. .... ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 236 ---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 312 (524)
T 2ec8_A 236 ---KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF 312 (524)
T ss_dssp ---EESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCE
T ss_pred ---ecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCc
Confidence 5778777 999763322 11 1111 23467999999999999999999999999988888888886554
Q ss_pred CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCeecCC
Q psy7039 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDEVSP 398 (516)
Q Consensus 320 ~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~l~~ 398 (516)
....| .......+..|+.+.|.|.+.|.|.+. +.|++++..+..
T Consensus 313 ~~~~~-----------------------------------~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~ 357 (524)
T 2ec8_A 313 INIFP-----------------------------------MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD 357 (524)
T ss_dssp EEEEE-----------------------------------SSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred eEeec-----------------------------------CCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence 31110 112356789999999999999999998 999999988765
Q ss_pred CC-ceEEEEcC----CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 399 DG-RIKFETSE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 399 ~~-~~~~~~~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.. ++...... ....|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..+|
T Consensus 358 ~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 413 (524)
T 2ec8_A 358 KWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413 (524)
T ss_dssp SBCCEESCCSSSCCEEEEEEEECSCCG-GGCEEEEEEEECSSCEEEEEEEEEECEEE
T ss_pred CccceeEEccCCCceeEEEEEEeecCc-ccCeEEEEEEEecCceEEEEEEEEEecCC
Confidence 54 33332222 246899999999 99999999999999999888999987655
No 11
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.96 E-value=3.5e-28 Score=243.70 Aligned_cols=297 Identities=19% Similarity=0.181 Sum_probs=216.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..|........+.+.... .|.+ .+....+.+|+.+.|.|.+ .
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~---~p~~---~~~~~~~~~G~~v~l~C~~~~------- 126 (395)
T 1bih_A 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLI---ASPA---KTHEKTPIEGRPFQLDCVLPN------- 126 (395)
T ss_dssp TSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEE---CCCC---EEEEECCBTTEEEEECCCCCE-------
T ss_pred CCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEee---cCCc---CCcceeeeeCCcEEEEecCCC-------
Confidence 466899999999999999999999877543222222222211 2322 3345677899999999996 6
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCe---eecc----CCceEEeecCCeeEEEeccCCCCCCe---eEEEEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ---VCQI----GGRADVQTTKSETVLDIPFCSRSDTG---HYSLTLE 216 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~---~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g---~Y~c~~~ 216 (516)
+.|.+.+.|++++. .... ..++.+.. ...|.|.+++.+|+| .|+|.+.
T Consensus 127 -------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~~~~Y~C~a~ 184 (395)
T 1bih_A 127 -------------------AYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAK 184 (395)
T ss_dssp -------------------EESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEE
T ss_pred -------------------CCCCCeEEEEecCCCcCcccccccccccEEEcC---CCcEEEEEEeeccCCCceEEEEEEE
Confidence 78999999999751 1111 23343322 337999999999999 9999999
Q ss_pred cCCCceEEEEEe---ec-------------ee--eeeccccCCceEEEEEEEEccCCCCCceeccccccc-------ceE
Q psy7039 217 NNLGTATASAHV---TG-------------TE--FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-------KRI 271 (516)
Q Consensus 217 ~~~g~~~~~~~~---~~-------------~~--~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-------~~~ 271 (516)
|..|........ .. .. .....+.+|+.+.|.|.+ .|.|.|.+.|.+... .++
T Consensus 185 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~---~g~p~~~i~W~~~g~~~~~~~~~~~ 261 (395)
T 1bih_A 185 NAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY---GSNPMGYPNYFKNGKDVNGNPEDRI 261 (395)
T ss_dssp CTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEE---ECSSCCCCEEEETTEECCCCTTSSE
T ss_pred ecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEe---ccCCCCeEEEEECCEEcCCCCceeE
Confidence 988875433221 10 00 112346789999999998 788999999965211 111
Q ss_pred EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 272 ~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
..........|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|....
T Consensus 262 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~---------------------------- 313 (395)
T 1bih_A 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ---------------------------- 313 (395)
T ss_dssp ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEE----------------------------
T ss_pred EEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCcccc----------------------------
Confidence 1111122347999999999999999999999988655 78888876553311
Q ss_pred eecccccccccccc-EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRD-MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~-~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
.+.. ..+..|+.+.|.|.+.|.|.+.+.|++++..+..+ ++.+. .+ .|.|.++.. .|.|.|+|
T Consensus 314 ----------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~~~-~d~G~Y~C 377 (395)
T 1bih_A 314 ----------KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKN-GDKGYYGC 377 (395)
T ss_dssp ----------CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCS-TTCEEEEE
T ss_pred ----------CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeCCc-ccCEEEEE
Confidence 1122 57889999999999999999999999999988654 55443 22 799999999 99999999
Q ss_pred EEEcCCCceeEEEEEEE
Q psy7039 430 QLVNTVGSDSASCKVYV 446 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v 446 (516)
.|.|..|....++.|.|
T Consensus 378 ~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 378 RATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEccCCCceEEEEEEE
Confidence 99999999988888877
No 12
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.96 E-value=6.3e-28 Score=241.30 Aligned_cols=292 Identities=19% Similarity=0.211 Sum_probs=213.9
Q ss_pred CCcEEEeCCCcCCC------eEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeec
Q psy7039 68 GETSCTVPGLIEGE------TYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~------~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~ 141 (516)
...+|.|.+++..| .|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~--~~~v~v~---~~p~~~-~~~~~~~v~~G~~v~l~C~~~-- 128 (388)
T 2v5m_A 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR--DVHVRAV---VAQYYE-ADVNKEHVIRGNSAVIKCLIP-- 128 (388)
T ss_dssp STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECC--CEEEEEE---CCCCCC-CBCCCEEEETTSCEEECCBCC--
T ss_pred CCceEEecccChhhccccccCceEEEEEEccCCeEEec--ceEEEEc---cccccc-cCccceeeecCCcEEEEEECc--
Confidence 45679999999887 999999999987753222 2222222 234444 445667899999999999998
Q ss_pred cccccCccccccccccCccceeecCcC---ceeeEEeeCCeeecc-----CCceEEeecCCeeEEEeccCCCCCC-eeEE
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQI-----GGRADVQTTKSETVLDIPFCSRSDT-GHYS 212 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~ 212 (516)
+.+ .+.+.|++++..+.. ..++.+. ....|.|.+++.+|+ |.|+
T Consensus 129 ------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~~G~Y~ 181 (388)
T 2v5m_A 129 ------------------------SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL---PSGELHIREVGPEDGYKSYQ 181 (388)
T ss_dssp ------------------------TTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC---TTSCEEESSCCGGGGGCCEE
T ss_pred ------------------------CCCCCCcceEEEEeCCCcccccccCCCCcEEEc---cCCcEEEecCCccccCeeEE
Confidence 553 489999998876642 2334332 234799999999999 9999
Q ss_pred EEEEcCCCceEE-E-----EEeece------ee-----eeccccCCceEEEEEEEEccCCCCCceecccccccc-e--EE
Q psy7039 213 LTLENNLGTATA-S-----AHVTGT------EF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-R--IK 272 (516)
Q Consensus 213 c~~~~~~g~~~~-~-----~~~~~~------~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-~--~~ 272 (516)
|.+.|..+.... . +.+... .+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... . ..
T Consensus 182 C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~ 258 (388)
T 2v5m_A 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA---QGFPAPSFRWYKFIEGTTRKQA 258 (388)
T ss_dssp EEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC---EEESCCEEEEEEECTTSSCEEE
T ss_pred EEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC---CCCCCCEEEEEecCCCCccccc
Confidence 999987543221 1 111110 00 12346679999999987 6789999999763111 0 00
Q ss_pred E----EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 273 E----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 273 ~----~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
. ........|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus 259 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~--------------------------- 311 (388)
T 2v5m_A 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--------------------------- 311 (388)
T ss_dssp CCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE---------------------------
T ss_pred ccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccc---------------------------
Confidence 0 011234689999999999999999999999988888888887654321
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+ ...|.|.++.. .|.|.|+
T Consensus 312 -----------~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~~~L~i~~v~~-~d~G~Y~ 369 (388)
T 2v5m_A 312 -----------IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKK-EDKGMYQ 369 (388)
T ss_dssp -----------EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCG-GGCEEEE
T ss_pred -----------cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------CCEEEEecCCh-hhCEEEE
Confidence 1123467889999999999999999999999999887542 23699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy7039 429 IQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v 446 (516)
|.|.|..|....++.|.|
T Consensus 370 C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 370 CFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEECSSCEEEEEEEEEE
T ss_pred EEEEcCCCcEEEEEEEEe
Confidence 999999999988888876
No 13
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.96 E-value=2.2e-28 Score=245.93 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=217.2
Q ss_pred CcEEEeC----CCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccc
Q psy7039 69 ETSCTVP----GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELS 143 (516)
Q Consensus 69 ~~~~~i~----~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~ 143 (516)
...+.|. +++..|.|.|+|.|.|..|..... ...+.+.. +|.+.........+.+|+.+.|.|.+ .
T Consensus 72 ~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~--~~~l~V~~---~p~~~~~~~~~~~v~~G~~v~l~C~~~~---- 142 (404)
T 3p3y_A 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSN--RIRLQVSK---SPLWPKENLDPVVVQEGAPLTLQCNPPP---- 142 (404)
T ss_dssp SCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEE--EEEEEECC---CCCCCCCCCCCEEEETTSCEEECCCCCC----
T ss_pred CceEEEEeccCCCCccCCEEEEEEEEcCCCeEeee--eEEEEEec---cCccccCCCCCeEEccCCcEEEEeCCCC----
Confidence 4445554 788899999999999987654211 22233322 33332234455889999999999998 5
Q ss_pred cccCccccccccccCccceeecCcCceeeEEeeCCeee-ccCCceEEeecCCeeEEEeccCCCCC-CeeEEEEEEcCCCc
Q psy7039 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC-QIGGRADVQTTKSETVLDIPFCSRSD-TGHYSLTLENNLGT 221 (516)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~Y~c~~~~~~g~ 221 (516)
+.|.+.+.|++++... ....++... ....|.|.+++..| +|.|+|.+.|..+.
T Consensus 143 ----------------------~~p~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~ 197 (404)
T 3p3y_A 143 ----------------------GLPSPVIFWMSSSMEPITQDKRVSQG---HNGDLYFSNVMLQDMQTDYSCNARFHFTH 197 (404)
T ss_dssp ----------------------CSSCCEEEEECTTSCBCCCCSSEEEC---TTSCEEESSCCSGGGSSCBEEEEECTTTC
T ss_pred ----------------------CCCCCeEEEeCCCccccCCCCcEEEc---CCCcEEEEeeeeccCCcceEEEEEecccc
Confidence 8899999999987443 333444432 33479999999999 59999999998776
Q ss_pred eEEE-----EEeec--------eee-------eeccccCCceEEEEEEEEccCCCCCceecccccccc--eEEEEEecce
Q psy7039 222 ATAS-----AHVTG--------TEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKEFVTSTT 279 (516)
Q Consensus 222 ~~~~-----~~~~~--------~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~ 279 (516)
.... +.+.. ..+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+.... ..........
T Consensus 198 ~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 274 (404)
T 3p3y_A 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA---SGVPTPDIAWYKKGGDLPSDKAKFENFN 274 (404)
T ss_dssp CEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB---CCSSCCEEEEEETTBCCCTTTEEEEGGG
T ss_pred ceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE---CCCCCCcEEEEECCEECCCCcccccccC
Confidence 4322 11110 000 12346789999999987 8889999999652211 0011223456
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus 275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~-------------------------------------- 316 (404)
T 3p3y_A 275 KALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL-------------------------------------- 316 (404)
T ss_dssp TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE--------------------------------------
T ss_pred ceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeee--------------------------------------
Confidence 789999999999999999999999998888888887655321
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... .......+ ..|.|.++.. .|.|.|+|.|.|..|..
T Consensus 317 ~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~ 393 (404)
T 3p3y_A 317 DEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQI-SSRAVYQCNTSNEHGYL 393 (404)
T ss_dssp ECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEET--TEEEESSCCS-SCCCEEEEEEEETTEEE
T ss_pred ccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecC--CEEEEeecCH-HHCEEEEEEEEeCCCcE
Confidence 12244678899999999999999999999999998875432 11112222 2699999999 99999999999999999
Q ss_pred eEEEEEEEec
Q psy7039 439 SASCKVYVVD 448 (516)
Q Consensus 439 s~s~~l~v~~ 448 (516)
..++.|.|.+
T Consensus 394 ~~~~~l~V~d 403 (404)
T 3p3y_A 394 LANAFVSVLD 403 (404)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEEEEe
Confidence 9999888864
No 14
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.96 E-value=1.1e-25 Score=240.28 Aligned_cols=359 Identities=18% Similarity=0.218 Sum_probs=244.5
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCC-CCCCceeceEEEEEe--CCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPIS-DGGSPITGYVVEMKD--KTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
...|....|.|.........+.|..... .....+..|...... .+..+.. ......+.+|.|.+++..|.|.|+|+
T Consensus 11 v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~g-r~~~~~~~sL~I~~v~~~D~G~Y~C~ 89 (642)
T 1e07_A 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG-REIIYPNASLLIQNIIQNDTGFYTLH 89 (642)
T ss_pred ccccccEEEEEccCCCCceEEEEECCcccCCcceEEEEEccccccccCccccC-ceeeccCCcEEECCCCcccCcEEEEE
Confidence 4456677777775555567899976210 111223444433211 0001110 01112356899999999999999999
Q ss_pred EecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC
Q psy7039 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP 168 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 168 (516)
+.+...... .....+.+.....+|.|.. .....+.+|+.+.|.|.+. + |
T Consensus 90 ~~~~~~~~~--~~~~~l~V~~~~~~p~i~~--~~~~~v~~g~~v~l~C~~~--------------------------~-p 138 (642)
T 1e07_A 90 VIKSDLVNE--EATGQFRVYPELPKPSISS--NNSKPVEDKDAVAFTCEPE--------------------------T-Q 138 (642)
T ss_pred EEcCCCeEE--EEEEEEEecccCCCCcEEc--cCceeEecCCcEEEEEECC--------------------------C-C
Confidence 987532211 1222344444444566542 2345688999999999999 7 8
Q ss_pred ceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-EEEEeece--------eeeecccc
Q psy7039 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT--------EFTDNNVH 239 (516)
Q Consensus 169 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~--------~~~~~~l~ 239 (516)
.+.+.|++++..+....++.+.. ....|.|.+++.+|+|.|+|.+.|..|... ....+.+. ......+.
T Consensus 139 ~~~v~W~~~g~~l~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~ 216 (642)
T 1e07_A 139 DATYLWWVNNQSLPVSPRLQLSN--GNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216 (642)
T ss_pred CeeEEEEECCeECCCCCceEEcC--CCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccc
Confidence 89999999999988777766543 346899999999999999999999877532 11222111 11233567
Q ss_pred CCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce--eEEEEEecC
Q psy7039 240 EGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA--DIEVVVVSK 317 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~--~~~l~v~~~ 317 (516)
+|+.+.|.|.+ .|.|.|.+.|.+.. ... .....|.|.++..+|+|.|+|.|.|..|.... .+.+.|...
T Consensus 217 ~G~~~~l~C~~---~g~p~~~i~W~~~g-~~i-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~ 287 (642)
T 1e07_A 217 SGENLNLSCHA---ASNPPAQYSWFVNG-TFQ-----QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287 (642)
T ss_pred cCCEEEEEEEc---CCCCCcEEEEEECC-eEc-----ccCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEcc
Confidence 89999999998 88999999997532 111 23567999999999999999999999887544 345555544
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
+..|.. .......+..|+.+.|.|.+.+.| +.+.|++++..+.
T Consensus 288 ~~~p~i------------------------------------~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~ 330 (642)
T 1e07_A 288 PPKPFI------------------------------------TSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLP 330 (642)
T ss_pred CCCCEE------------------------------------EcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCC
Confidence 332210 011223455688899999999876 6999999998887
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
.+.++.+.. ....|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|...|..|
T Consensus 331 ~~~~~~~~~--~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~ 384 (642)
T 1e07_A 331 VSPRLQLSN--DNRTLTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384 (642)
T ss_pred CcCCEEEeC--CCCEEEEeccCc-ccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCC
Confidence 666666543 335799999999 99999999999999874 556788887666443
No 15
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.96 E-value=6e-27 Score=257.09 Aligned_cols=331 Identities=18% Similarity=0.239 Sum_probs=242.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 387 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~-------- 454 (816)
T 3dmk_A 387 SESVLRIESVKKEDKGMYQCFVRNDRESAEA---SAELKLGGRFDPPVIR-QAFQEETMEPGPSVFLKCVAG-------- 454 (816)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEECSSCEEEE---CCEEECCCSSCCCEEE-EECCCEEECSSSCEEEEEEEE--------
T ss_pred CCCEEEEcCCCHHHCEEEEEEEECCCCcEEE---EEEEEEccccCCCceE-ecCcceEEcCCCCEEEEEEEe--------
Confidence 4578999999999999999999998764332 2334443334567766 556667889999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-----cCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-----TKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
|.|.+.+.|++++..+....++.... ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 455 ------------------g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 516 (816)
T 3dmk_A 455 ------------------GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516 (816)
T ss_dssp ------------------CSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred ------------------cCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence 99999999999999988776665431 2234579999999999999999999999887
Q ss_pred EEEEEeeceee------eeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCC-CC
Q psy7039 223 TASAHVTGTEF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSV-RK 290 (516)
Q Consensus 223 ~~~~~~~~~~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~-~~ 290 (516)
.....+.+... ....+..|+.+.+.|.+ .|.|.+.+.|.+.. ..... ....+.|.|.++. ..
T Consensus 517 ~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~---~g~p~~~i~W~k~~~~l~~~~~~~---~~~~~~l~i~~v~~~~ 590 (816)
T 3dmk_A 517 EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV---AGYPIDSIVWERDNRALPINRKQK---VFPNGTLIIENVERNS 590 (816)
T ss_dssp EEEEEEEECSSCEECCCCCEEEETTCCEEEECCE---ECSSEEEEEEEETTEESCCSTTEE---ECTTSEEEESSCCHHH
T ss_pred EEEEEEEEecCCeeEccCCeEEecCCeEEEEEEe---cCCCCCEEEEEECCeEcccCCceE---EecCCeEEEEecCccc
Confidence 76665443221 22345689999999988 78889999996521 11111 2345689999998 68
Q ss_pred CceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEc
Q psy7039 291 DSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~ 369 (516)
|+|.|+|.|.|..|.. ...+.+.+...|..... ......+..
T Consensus 591 d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~-------------------------------------~~~~~~~~~ 633 (816)
T 3dmk_A 591 DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPF-------------------------------------AFEEGPAQV 633 (816)
T ss_dssp HCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCC-------------------------------------CCCSSCEES
T ss_pred cCEEEEEEEEECCCceeeeeEEEEEecCCccccc-------------------------------------cccccccCC
Confidence 9999999999998864 44566666655543211 112345788
Q ss_pred CCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 370 GEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
|+.+.|.|.+.+.+.+ .+.|++++..+..+..+... .......|.|.++.. .|.|.|+|.|.|..|....++.|.|.
T Consensus 634 G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~ 712 (816)
T 3dmk_A 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA-SHAGNFTCHARNLAGHQQFTTPLNVY 712 (816)
T ss_dssp SCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEEEECEE
T ss_pred CCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCCh-hhCEEEEEEEEeCCccEEEEEEEEEE
Confidence 9999999999876665 89999999888655554443 334567899999999 99999999999999999888889888
Q ss_pred cCCCCCCCCcccccccCCeEEEEee
Q psy7039 448 DKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 448 ~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.+|..-..+.......++.+.|.+.
T Consensus 713 ~~P~~~~~~~~~~v~~G~~v~l~C~ 737 (816)
T 3dmk_A 713 VPPRWILEPTDKAFAQGSDAKVECK 737 (816)
T ss_dssp EEEEEEECCCCEEEETTCCEEEECE
T ss_pred eCCceeeecccceecCCCcEEEEEE
Confidence 7653210111122234555555554
No 16
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=228.33 Aligned_cols=275 Identities=16% Similarity=0.211 Sum_probs=205.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
.+|.|. .+. .+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+.
T Consensus 6 ~~P~~~-~~~-~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~~~~~~~~~~~~~~~~ 57 (317)
T 2y25_A 6 TGPHFV-EYL-SWEVTGECNVLLKCKVA--------------------------NIKKETHIVWYKDEREISVDEKHDFK 57 (317)
T ss_dssp SCCEEE-EEE-EEEEETTTEEEEEEEEE--------------------------SCCTTCEEEEEETTEEECCSCC----
T ss_pred CCCcEe-eee-eEEECCCCeEEEEEEEc--------------------------CCCCCCEEEEEECCeEcCCCCcEEEE
Confidence 467665 333 58899999999999998 66 78999999999998876666553
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEc------cC-CC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVN------AA-GT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~------~~-g~ 256 (516)
.....|.|.+++.+|+|.|+|.+.|..|.......+.+..+ ....+..|..+.+.|.+.. .. +.
T Consensus 58 --~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~ 135 (317)
T 2y25_A 58 --DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYV 135 (317)
T ss_dssp ---CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCC
T ss_pred --CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCC
Confidence 44579999999999999999999999887766654433221 1233456777777776511 11 26
Q ss_pred CCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC-------------
Q psy7039 257 EKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP------------- 318 (516)
Q Consensus 257 p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p------------- 318 (516)
|.+.+.|.+. ...+...........|.|.++...|.|.|+|.|.|..|....++.+.+....
T Consensus 136 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~ 215 (317)
T 2y25_A 136 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215 (317)
T ss_dssp SSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcc
Confidence 8999999652 2334455555666779999999999999999999988887777666653210
Q ss_pred C-CCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 319 G-PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 319 ~-~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
. ....| .+. ...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.
T Consensus 216 ~~~~~~p-~~~------------------------------~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~ 264 (317)
T 2y25_A 216 IAEKNRA-RVL------------------------------GGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA 264 (317)
T ss_dssp HHTTTSC-EEE------------------------------EBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC
T ss_pred cCcCCCC-ccc------------------------------ccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC
Confidence 0 00000 000 012345678999999999999999999999999999988
Q ss_pred CCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 398 PDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 398 ~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+.++.+... +....|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..
T Consensus 265 ~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 265 SDDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp CCSSEEECCBTTTEEEEEEBSCCS-TTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCcEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 7777777655 5667899999999 999999999999999999999998874
No 17
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.95 E-value=1.3e-27 Score=248.97 Aligned_cols=309 Identities=14% Similarity=0.106 Sum_probs=203.5
Q ss_pred CCcEEEeCCCcCCCeE-EEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETY-QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y-~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....|.|.+++..|.| .|+|.|.|..|........+.+. .....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 166 ~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~-~~~~~~p~i~-~~~~~~~v~~G~~v~L~C~~~------- 236 (524)
T 2ec8_A 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFKAVPVVS-VSKASYLLREGEEFTVTCTIK------- 236 (524)
T ss_dssp TTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEE-CCCCSCCEEE-CSCSEEEEETTSCEEEEEEEE-------
T ss_pred CCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEE-eCCCCCCcEE-ecCCcceEEcCCcEEEEEEEe-------
Confidence 4568999999999999 99999998765443212222222 1223577776 556667899999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEeeCCeee--ccCCceEEe---ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVC--QIGGRADVQ---TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~--~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+. +.|++++..+ ....+..+. .......|.|.+++.+|+|.|+|.+.|..|
T Consensus 237 -------------------g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 297 (524)
T 2ec8_A 237 -------------------DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297 (524)
T ss_dssp -------------------ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred -------------------cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCC
Confidence 888776 9999998873 332222222 123357999999999999999999999998
Q ss_pred ceEEEEEeecee---e-------eeccccCCceEEEEEEEEccCCCCCce-ecccccc-----cc-eEEEEEec----ce
Q psy7039 221 TATASAHVTGTE---F-------TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALI-----GK-RIKEFVTS----TT 279 (516)
Q Consensus 221 ~~~~~~~~~~~~---~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~-----~~-~~~~~~~~----~~ 279 (516)
.......+.+.. + ....+.+|+.+.+.|.+ .|.|.|. +.|.+.. .. ........ ..
T Consensus 298 ~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~ 374 (524)
T 2ec8_A 298 SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374 (524)
T ss_dssp EEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEE---EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEE
T ss_pred ceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEE---eecCCCcEEEEEECCeeccCCccceeEEccCCCceeE
Confidence 877665543321 1 13457789999999998 7889999 9996521 11 11111111 34
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.....
T Consensus 375 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~------------------------------------ 418 (524)
T 2ec8_A 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTY------------------------------------ 418 (524)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEE------------------------------------
T ss_pred EEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeec------------------------------------
Confidence 68999999999999999999999999888888888765532110
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC--------CCCc---eEEEEcCCeE-EEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--------PDGR---IKFETSENQT-IYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--------~~~~---~~~~~~~~~~-~l~i~~~~~~~~~g~y 427 (516)
.....| .|.|.+.|.|.|.+.|++++..+. .+.. +.....+... ...+..... .|.|.|
T Consensus 419 -----~~~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~-~d~G~Y 489 (524)
T 2ec8_A 419 -----DRLVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAF-KHNGTV 489 (524)
T ss_dssp -----ECCSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSC-CC----
T ss_pred -----ccCcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEc-cCCEEE
Confidence 012234 899999999999999999976541 1111 1111111111 112444446 899999
Q ss_pred EEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
+|.|.|..|.....+.|.|..++..
T Consensus 490 ~C~a~N~~G~~~~~~~l~V~e~~~~ 514 (524)
T 2ec8_A 490 ECKAYNDVGKTSAYFNFAFKGNNKE 514 (524)
T ss_dssp -CEEECSSCEEECCCCCCC------
T ss_pred EEEEEcCCCceEEEEEEEEecCCHH
Confidence 9999999999999999999876654
No 18
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.95 E-value=2.6e-26 Score=252.00 Aligned_cols=350 Identities=15% Similarity=0.166 Sum_probs=243.5
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe------EEeecCCcEEEeCCCcCCCe-EEEEEEEecCCCC-C
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA------VVVPAGETSCTVPGLIEGET-YQFQVRAVNAAGP-G 96 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~------~~~~~~~~~~~i~~l~~~~~-y~~~~~a~n~~g~-~ 96 (516)
.....+.|.|..|.... .....+.|...+...... ......+.+|.|.++++.|. |.|+|.|.|..+. .
T Consensus 151 ~~G~~v~L~C~~~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~ 227 (816)
T 3dmk_A 151 IRGNSAVIKCLIPSFVA---DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227 (816)
T ss_dssp ETTSCEEECCBCCHHHH---TTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEEEEEEETTTCCE
T ss_pred ecCceEEEEECCCcccc---ccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhccceeEEEEeeeeeeee
Confidence 46788999998752111 011345555543321100 01112456899999999998 9999999875432 2
Q ss_pred CCCCCCcceEe--ccCCCCCccccC-cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeE
Q psy7039 97 EASKPTAPIVA--KPKNLAPRIDRS-TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173 (516)
Q Consensus 97 ~~s~~~~~~~~--~~~~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~ 173 (516)
..+.....+.+ .....+|.+... ......+..|+.+.|.|.+. |.|.+.+.
T Consensus 228 ~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--------------------------g~p~p~v~ 281 (816)
T 3dmk_A 228 RLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--------------------------GYPVPVFR 281 (816)
T ss_dssp EECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCB--------------------------CSSCCEEE
T ss_pred eecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEee--------------------------ecCCCeEE
Confidence 11222222222 222345665422 22457889999999999999 99999999
Q ss_pred EeeCCeeec------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccC
Q psy7039 174 WSINGQVCQ------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHE 240 (516)
Q Consensus 174 W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~ 240 (516)
|++++.... ...+... ...+|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+.+
T Consensus 282 W~k~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~ 357 (816)
T 3dmk_A 282 WYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDF 357 (816)
T ss_dssp EEEECTTSSCEEECCCSSSEEE----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCT
T ss_pred EEeCCCCCccCcceecCCceEe----ccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecC
Confidence 998533221 1222221 2358999999999999999999999887765554333211 2345778
Q ss_pred CceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 241 GKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
|..+.+.|.+ .|.|.+.+.|.+... . .......|.|.++..+|+|.|+|.|.|..|....+..+.|.....+
T Consensus 358 G~~v~l~C~~---~g~p~~~v~W~k~g~-~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 429 (816)
T 3dmk_A 358 GRPAVFTCQY---TGNPIKTVSWMKDGK-A----IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP 429 (816)
T ss_dssp TSCEEEEEEE---EEECCCEEEEEETTE-E----CSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCC
T ss_pred CCCEEEEEEE---eccCCCEEEEEECCE-E----CCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCC
Confidence 9999999998 678999999965221 1 1234568999999999999999999999988777777776543333
Q ss_pred CCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC
Q psy7039 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400 (516)
Q Consensus 321 p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~ 400 (516)
|.. . .......+..|+.+.|.|.+.|.|.+.+.|++++..+....
T Consensus 430 p~i--~---------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~ 474 (816)
T 3dmk_A 430 PVI--R---------------------------------QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474 (816)
T ss_dssp CEE--E---------------------------------EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCT
T ss_pred Cce--E---------------------------------ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCC
Confidence 210 0 11234567899999999999999999999999999887666
Q ss_pred ceEEEE----cC-CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 401 RIKFET----SE-NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 401 ~~~~~~----~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
++.... .+ ....|.|.++.. .|.|.|+|.|.|..|....+..|.|..+|.
T Consensus 475 ~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 529 (816)
T 3dmk_A 475 RYQVGQYVTVNGDVVSYLNITSVHA-NDGGLYKCIAKSKVGVAEHSAKLNVYGLPY 529 (816)
T ss_dssp TEEEEEEECTTSCEEEEEEESSCCT-TTCEEEEEEEEETTEEEEEEEEEEECSSCE
T ss_pred CcccccEEecCCCcEEEEEEeeccc-cCCEEEEEEEEECCCeEEEEEEEEEecCCe
Confidence 665422 11 234699999999 999999999999999999999999987663
No 19
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.95 E-value=4.4e-26 Score=237.38 Aligned_cols=309 Identities=11% Similarity=0.073 Sum_probs=205.2
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..|..........+.+. ....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 68 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~-~~~~~~~~~~g~~v~l~C~~~------- 139 (523)
T 2rcj_C 68 TSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVT-LFPPSSEELQANKATLVCLIS------- 139 (523)
T ss_pred CEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEE-ecCCcccccCCCceEEEEEec-------
Confidence 45689999999999999999999976632111112223332 223456655 333445567899999999999
Q ss_pred CccccccccccCccceeecCcCc--eeeEEeeCCeeeccCCceEEe---ecCC---eeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPF--LNHGWSINGQVCQIGGRADVQ---TTKS---ETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~~~~~~~~~~~~~~---~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+.++ +.++|++++..+....+.... ..+. .+.|.|.++..+|+|.|+|.+.|.
T Consensus 140 -------------------g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~ 200 (523)
T 2rcj_C 140 -------------------DFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE 200 (523)
T ss_pred -------------------cccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEec
Confidence 7654 499999999887654332211 1111 247999999999999999999998
Q ss_pred CCceEEEEEeec-------eee----eeccccCCceEEEEEEEEccCCC-CCc-eecccccccceE-----EEEEec---
Q psy7039 219 LGTATASAHVTG-------TEF----TDNNVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGKRI-----KEFVTS--- 277 (516)
Q Consensus 219 ~g~~~~~~~~~~-------~~~----~~~~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~-----~~~~~~--- 277 (516)
.+.......... ..+ ....+.+|..+.+.|.+ .|. |.| .+.|.+...... .+....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~---~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~ 277 (523)
T 2rcj_C 201 GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLV---KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLY 277 (523)
T ss_pred CcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEE---eceeCCCeEEEEecCCcccceEeCCcEecCCCcE
Confidence 876654443210 011 11235689999999998 665 767 899976322100 011011
Q ss_pred -ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 278 -TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 278 -~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
....|.|.++...| |.|+|.|.|..|.......+.+...|.. .+ .
T Consensus 278 ~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~-----~~------------~---------------- 323 (523)
T 2rcj_C 278 SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSV-----FL------------F---------------- 323 (523)
T ss_pred EEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceE-----Ee------------c----------------
Confidence 13489999999999 9999999999998766666655433211 00 0
Q ss_pred ccccccccE-EEEcCCeEEEEEEEeeecC----CceEEEECCeecCCCCceEEEE-cCC----eEEEEEcCceecCCceE
Q psy7039 357 TSDLSIRDM-TVLAGEEFTITVPFSGRPK----PTPIWTVNGDEVSPDGRIKFET-SEN----QTIYRNKSAKRATDSGS 426 (516)
Q Consensus 357 ~~~~~~~~~-~v~~g~~~~l~C~~~g~p~----~~i~W~~~~~~l~~~~~~~~~~-~~~----~~~l~i~~~~~~~~~g~ 426 (516)
.+... .+..|+.+.|.|.+.|.++ +.|.|++++..+.......... ..+ .+.|.|..+.. +|.|.
T Consensus 324 ----~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~G~ 398 (523)
T 2rcj_C 324 ----PPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNW-LDGKE 398 (523)
T ss_pred ----CCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHh-cCCCe
Confidence 01111 2678999999999998653 4899999998875443221111 111 24588999999 99999
Q ss_pred EEEEEEcCCCceeEEEEEE
Q psy7039 427 YTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 427 y~c~a~n~~G~~s~s~~l~ 445 (516)
|+|.|.|..|.......+.
T Consensus 399 Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 399 YKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred EEEEEeCCCCCCceeEEEE
Confidence 9999999988765555454
No 20
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=221.39 Aligned_cols=264 Identities=22% Similarity=0.305 Sum_probs=200.7
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|. .+.|++ ++..+....++.+..
T Consensus 4 ~p~v~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~-~v~W~~~~g~~~~~~~~~~~~~ 55 (291)
T 2wim_A 4 LLQVT-ISLSKVELSVGESKFFTCTAI--------------------------GEPE-SIDWYNPQGEKIISTQRVVVQK 55 (291)
T ss_dssp CCEEE-ESCSEEEEETTCCEEEEEEEE--------------------------SCCS-EEECBCTTCCBCCCBTTEEEEE
T ss_pred CceEE-EeccceEecCCCcEEEEEEEe--------------------------CCCC-ceEEECCCCcCccCCCcEEEec
Confidence 56665 566778999999999999999 8775 899999 777777777888877
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-EEEEeece---ee----eeccccCCceEEEEEEEEccCCCCCceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT---EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~---~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W 263 (516)
.+....|.|.+++.+|+|.|+|.+.|..|... ....+.+. .+ ....+.+|+.+.+.|.+ .|.|.+.+.|
T Consensus 56 ~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W 132 (291)
T 2wim_A 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSW 132 (291)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCC---BCSSCCEEEE
T ss_pred CCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEE---ccCCCCEEEE
Confidence 77788999999999999999999999888753 22222221 11 22346789999999987 7889999999
Q ss_pred cccc-------cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc--eeEEEEEecCCCCCCCCceeeeccCCe
Q psy7039 264 DALI-------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPES 334 (516)
Q Consensus 264 ~~~~-------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~ 334 (516)
.+.. ..+.. ......|.|.++...|.|.|+|.+.|..+... ..+.+.+..+|.....
T Consensus 133 ~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~----------- 198 (291)
T 2wim_A 133 LYHNEEVTTISDNRFA---MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMP----------- 198 (291)
T ss_dssp ECC----CBCCCSSEE---ECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCS-----------
T ss_pred EECCccccccCCceEE---EccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccC-----------
Confidence 6522 11111 23456799999999999999999999875533 3455566555443211
Q ss_pred eEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEE
Q psy7039 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414 (516)
Q Consensus 335 ~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~ 414 (516)
.......+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+. .....|.
T Consensus 199 -------------------------~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~--~~~~~L~ 251 (291)
T 2wim_A 199 -------------------------QKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELT 251 (291)
T ss_dssp -------------------------CSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC--STTCEEE
T ss_pred -------------------------cccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc--CCccEEE
Confidence 0111234568999999999999999999999999988777766543 3345799
Q ss_pred EcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
|.++.. .|.|.|+|.|.|..|....++.|.|..+
T Consensus 252 i~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 252 VRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EESCCS-TTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EeeCCc-ccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 999999 9999999999999999999999998764
No 21
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.95 E-value=4e-26 Score=233.07 Aligned_cols=327 Identities=15% Similarity=0.110 Sum_probs=213.3
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEe-ecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCC-----
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVV-PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS----- 99 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s----- 99 (516)
....+.|.+... +..+...+.|.|...+......... ......|.|.+++..|.|.|+|+|.|..|.....
T Consensus 100 ~G~~v~L~C~~~---g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~ 176 (450)
T 1z7z_I 100 VGKNLTLRCQVE---GGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENT 176 (450)
T ss_dssp TTSEEEEEEEEE---CCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEE
T ss_pred eCCeEEEEEEec---CCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeec
Confidence 456788888763 2222334466666654411111111 1123589999999999999999999987643210
Q ss_pred CCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-C--ceeeEEe
Q psy7039 100 KPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P--FLNHGWS 175 (516)
Q Consensus 100 ~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p--~~~i~W~ 175 (516)
.....+.+.. +..+|.+. ....+.+|+.+.|.|.+. +. | .+.+.|+
T Consensus 177 s~~~~l~v~~~~~~~p~~~----~~~~v~~G~~v~l~C~~~--------------------------g~~P~~~~~~~W~ 226 (450)
T 1z7z_I 177 SAPYQLQTFVLPATPPQLV----SPRVLEVDTQGTVVCSLD--------------------------GLFPVSEAQVHLA 226 (450)
T ss_dssp CCCEECEECCCCSSCCEEE----CCSEEETTSEEEEEEEEE--------------------------SCTTGGGCEEEEE
T ss_pred cCccceeeeccCCCCCEec----CceeEEeCCcEEEEEEee--------------------------CCCCCCceEEEEe
Confidence 0111111111 12344332 126789999999999999 77 7 7899999
Q ss_pred eCCeeeccCCceEEeecCCeeEEEeccCCCCCCe--eEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEE
Q psy7039 176 INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTG--HYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEY 246 (516)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~ 246 (516)
+++..+.. +.....+.....+.+ +++.+|+| .|+|.+.|..|.......+.+.. .....+.+|+.+.|
T Consensus 227 ~~~~~~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l 303 (450)
T 1z7z_I 227 LGDQRLNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 303 (450)
T ss_dssp ETTEECCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEE
T ss_pred CCCEeCCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEE
Confidence 99988764 333221211112233 78999999 99999999988776555433322 12345778999999
Q ss_pred EEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC-Cc---ceeEEEEEecCCCCCC
Q psy7039 247 RVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-ID---MADIEVVVVSKPGPPT 322 (516)
Q Consensus 247 ~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-~~---~~~~~l~v~~~p~~p~ 322 (516)
.|.+ . |.|.+.|+ +... ...+....|.|.++..+|.|.|+|.|.|..+ .. ...+.|.|..+|....
T Consensus 304 ~C~~---~--p~p~i~W~---g~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~ 373 (450)
T 1z7z_I 304 KCEA---H--PRAKVTLN---GVPA--QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDE 373 (450)
T ss_dssp EEEC--------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCS
T ss_pred EEec---C--CCCEeEEC---CEEc--CCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceee
Confidence 9998 3 88999993 2222 1234556899999999999999999997655 32 3567777776665432
Q ss_pred CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce
Q psy7039 323 GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402 (516)
Q Consensus 323 ~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~ 402 (516)
. ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...+.
T Consensus 374 ~------------------------------------~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~- 416 (450)
T 1z7z_I 374 R------------------------------------DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE- 416 (450)
T ss_dssp T------------------------------------TSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-
T ss_pred c------------------------------------cCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCC-
Confidence 2 123456889999999999999999999999999973322211
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.+ .+.. .|+|.|+|.|.|..|..+.++.|.|..
T Consensus 417 ---------~~---~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 417 ---------SV---TVTR-DLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp ---------CE---ECCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ---------eE---eEeh-hhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 12 4677 999999999999999999999998874
No 22
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=224.50 Aligned_cols=266 Identities=20% Similarity=0.272 Sum_probs=186.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+.. .++.+..
T Consensus 5 ~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~i~W~k~g~~i~~-~~~~~~~ 56 (304)
T 2yd9_A 5 EPPRFI-KEPKDQIGVSGGVASFVCQAT--------------------------GDPKPRVTWNKKGKKVNS-QRFETIE 56 (304)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEC-------C-TTEEEEE
T ss_pred cCCeee-ecCCceEecCCCeEEEEEEEE--------------------------EeCCCeEEEEECCEECCC-CceEEEE
Confidence 577777 667788999999999999999 999999999999988754 3444332
Q ss_pred --cCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEEEEeece----------ee----eeccccCCceEEEEEEEEccC
Q psy7039 192 --TKSETVLDIPFCSR-SDTGHYSLTLENNLGTATASAHVTGT----------EF----TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 192 --~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~~~~~~~----------~~----~~~~l~~g~~~~~~~~~~~~~ 254 (516)
.+....|.|.+++. +|+|.|+|.+.|..|.......+.+. .+ ....+..|+.+.+.|.+ .
T Consensus 57 ~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~---~ 133 (304)
T 2yd9_A 57 FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA---S 133 (304)
T ss_dssp ETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE---E
T ss_pred ecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC---c
Confidence 33458999999998 99999999999988875544433321 11 12346679999999998 7
Q ss_pred CCCCceeccccccc------ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCcee
Q psy7039 255 GTEKPKISLDALIG------KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDY 327 (516)
Q Consensus 255 g~p~p~i~W~~~~~------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~ 327 (516)
|.|.|.+.|.+... ....+. ....+.|.|.++...|+|.|+|.|.|..|..... ..+.|.....+|. +.
T Consensus 134 g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~--~~- 209 (304)
T 2yd9_A 134 GNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR--FS- 209 (304)
T ss_dssp CSSCCEEEEEETTEECCGGGGTTSEE-ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEE--EE-
T ss_pred cCCCCeEEEEECCEECcCCCCcceEE-eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCc--EE-
Confidence 88999999965211 100111 2345689999999999999999999998875433 4555543222110 00
Q ss_pred eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc
Q psy7039 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 328 ~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.....+.
T Consensus 210 --------------------------------~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---- 253 (304)
T 2yd9_A 210 --------------------------------ILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---- 253 (304)
T ss_dssp --------------------------------ECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----
T ss_pred --------------------------------ecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----
Confidence 01123456789999999999999999999999998886554322
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
.+...|.|.++ .|+|.|+|.|.|..|....++.|.|...+.
T Consensus 254 ~~~~~L~i~~~---~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 294 (304)
T 2yd9_A 254 VGRNVLELTDV---KDSANYTCVAMSSLGVIEAVAQITVKSLPK 294 (304)
T ss_dssp BSEEEEEECSC---CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred CCcEEEEEccc---ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence 23456777665 689999999999999999999999986554
No 23
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=220.31 Aligned_cols=261 Identities=23% Similarity=0.336 Sum_probs=206.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus 3 ~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 55 (305)
T 2nzi_A 3 MAPHFK-EELRNLNVRYQSNATLVCKVT--------------------------GHPKPIVKWYRQGKEIIADGLKYRIQ 55 (305)
T ss_dssp CCCEEE-ECCCCEEECTTCCEEEEEEEE--------------------------CSSCCEEEEEETTEECCCCSSSEEEE
T ss_pred CCCeee-ecccceEEeCCCcEEEEEEEe--------------------------CCCCCeEEEEECCEEcccCCCeEEEE
Confidence 467776 566789999999999999999 9999999999999888654 455544
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee------------eeccccCCceEEEEEEEEccCCCC
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF------------TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~------------~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
. .+....|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|..+.+.|.+ .|.|
T Consensus 56 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p 132 (305)
T 2nzi_A 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF---SGKP 132 (305)
T ss_dssp EETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEE---EEES
T ss_pred ECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEE---CCCC
Confidence 3 456679999999999999999999999887665554433221 12235679999999998 7889
Q ss_pred Cceeccccc-----ccceEEEEEecceeeEEEcc-CCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeecc
Q psy7039 258 KPKISLDAL-----IGKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 258 ~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~-l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~ 331 (516)
.|.+.|.+. ...++.+........|.|.+ +...|.|.|+|.|.|..|.....+.+.|...|.+|.. +.+..+.
T Consensus 133 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~-~~~~~~~ 211 (305)
T 2nzi_A 133 DPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVS 211 (305)
T ss_dssp CCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEE-EEEESCC
T ss_pred CCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCC-ceeeecc
Confidence 999999652 23344555556678999999 9999999999999999999988999999988877655 6777789
Q ss_pred CCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeE
Q psy7039 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411 (516)
Q Consensus 332 ~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~ 411 (516)
..++.|+|.+|..+++.+|.. |.+...+.+...|.+.+... ..
T Consensus 212 ~~~v~l~w~~p~~~g~~~i~~------------------------y~v~~~~~~~~~w~~~~~~~-------------~~ 254 (305)
T 2nzi_A 212 RDSVNLTWTEPASDGGSKITN------------------------YIVEKCATTAERWLRVGQAR-------------ET 254 (305)
T ss_dssp SSCEEEEEECCSCCSBSCEEE------------------------EEEEEEETTSCCEEEEEEES-------------SS
T ss_pred CCEEEEEEcCCccCCCCceeE------------------------EEEEEecCCCCccEECcccc-------------Cc
Confidence 999999999987776665544 45666666777887655322 24
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.++.+ .+.|.|+|.|.|..|.+..+
T Consensus 255 ~~~i~~l~~-~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 255 RYTVINLFG-KTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp EEEECSCCS-SCEEEEEEEEEETTEECCCC
T ss_pred eEEecCCCC-CCeEEEEEEEEeCCcccCCc
Confidence 689999999 99999999999999986544
No 24
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.95 E-value=6.2e-25 Score=231.91 Aligned_cols=299 Identities=14% Similarity=0.093 Sum_probs=207.1
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
+|.|.+++..|.|.|+|.|.|..|... ....+.+.. .+ +..+.+.+|+.+.|.|.+.
T Consensus 186 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~--~~-------p~~~~~~~G~~v~l~C~~~----------- 242 (585)
T 2ocw_A 186 SVVINQLRLSDAGQYLCQAGDDSNSNK---KNADLQVLK--PE-------PELVYEDLRGSVTFHCALG----------- 242 (585)
T ss_pred EEEEccCChhHCeEEEEEeccCCcccc---ceEEEEEcc--CC-------CceeEEcCCCcEEEEEEcC-----------
Confidence 799999999999999999998776532 222233321 12 2345678999999999965
Q ss_pred cccccccCccceeecCc-Cc-eeeEEe-eCCee---ec---------cCCceEEeec--CCeeEEEeccCCCCCCeeEEE
Q psy7039 151 ALGVRANSTKGWVKLSE-PF-LNHGWS-INGQV---CQ---------IGGRADVQTT--KSETVLDIPFCSRSDTGHYSL 213 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~-~~i~W~-~~~~~---~~---------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c 213 (516)
+. |. +.+.|+ +++.. +. ...++.+... .+...|.|.+++.+|+|.|+|
T Consensus 243 ---------------~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C 307 (585)
T 2ocw_A 243 ---------------PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLC 307 (585)
T ss_pred ---------------CCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEE
Confidence 32 22 788887 77631 11 1234444332 233489999999999999999
Q ss_pred EEEcCCCceE----EEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCcee----cccc--ccc--------
Q psy7039 214 TLENNLGTAT----ASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKI----SLDA--LIG-------- 268 (516)
Q Consensus 214 ~~~~~~g~~~----~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i----~W~~--~~~-------- 268 (516)
.+.|..+... ....+.+.. .....+.+|+.+.|.|.+ .|.|.|.+ .|.+ ...
T Consensus 308 ~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~---~~~p~p~i~~w~~W~~~~~g~~~~l~~~~ 384 (585)
T 2ocw_A 308 GAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY---NRKESKSIKYWCLWEGAQNGRCPLLVDSE 384 (585)
T ss_pred EEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec---CCCCCccEEEEEEEEccCCCCCceeeeec
Confidence 9998533221 333222211 123345689999999998 78898877 6865 211
Q ss_pred --------ceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 269 --------KRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 269 --------~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.++.+... .....|.|.++..+|+|.|+|.| |..|.....+.|.|...|+...
T Consensus 385 ~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~---------------- 447 (585)
T 2ocw_A 385 GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK---------------- 447 (585)
T ss_pred ceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc----------------
Confidence 11112111 12234999999999999999999 8888888888888876543321
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe----eecCCceEEEECCeecCCCCc------eEE-EEc
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS----GRPKPTPIWTVNGDEVSPDGR------IKF-ETS 407 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~----g~p~~~i~W~~~~~~l~~~~~------~~~-~~~ 407 (516)
.+....+..|+.+.|.|.+. +.|.+.|.|++++..+..... +.. ...
T Consensus 448 ----------------------~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~ 505 (585)
T 2ocw_A 448 ----------------------VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505 (585)
T ss_pred ----------------------cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCc
Confidence 12456789999999999996 677889999999977643211 121 112
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCcee-EEEEEEEecCC
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-ASCKVYVVDKP 450 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s~~l~v~~~p 450 (516)
+....|.|.++.. .|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus 506 ~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 506 SRLVSLTLNLVTR-ADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred ccEEEEEECCCCc-ccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 3446899999999 999999999999999754 44889998776
No 25
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=240.05 Aligned_cols=297 Identities=12% Similarity=0.061 Sum_probs=198.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+|.|.+++..|.|.|+|.|.|..|... ....+.+. |.+............|+.+.|.|.+.
T Consensus 103 ~SL~I~~v~~~D~G~Y~C~~~n~~~~~~---~~~~v~v~-----~~~~~~~~~p~~~~~~~~~~L~C~a~---------- 164 (527)
T 3qs9_E 103 VSMVILKMTETQAGEYLLFIQSEATNYT---ILFTVSIR-----NTLLYTLRRPYFRKMENQDALVCISE---------- 164 (527)
T ss_dssp EEEEESSCCSSSCSEEEEEEEC--CEEE---EEEEEEEC----------CEEEEEEEECSSSSCEEEEEE----------
T ss_pred EEEEECcCChhhCeeEEEEEEeccccEE---EEEEEEEC-----CceeeccCCCcEEecCCceEEEEEEc----------
Confidence 4699999999999999999998765432 12222222 11111222223445677889999999
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-EEe
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS-AHV 228 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~-~~~ 228 (516)
|.|.+.|.|++++..+..... ............+...|+|.|+|.+.|..|..... ..+
T Consensus 165 ----------------G~P~P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l 224 (527)
T 3qs9_E 165 ----------------SVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224 (527)
T ss_dssp ----------------ESSCCEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEE
T ss_pred ----------------eecCCeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEE
Confidence 999999999998765531110 01111223344456899999999999999887553 222
Q ss_pred ece-----eeeeccccCCceEEEEEEEEccCCCCCceeccccccc-----ceEEE-EE-----ecceeeEEEccCCCCCc
Q psy7039 229 TGT-----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----KRIKE-FV-----TSTTASLNIKNSVRKDS 292 (516)
Q Consensus 229 ~~~-----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----~~~~~-~~-----~~~~~~l~i~~l~~~d~ 292 (516)
.+. ......+.+|+.+.|.|.+. .|.|.|.+.|.+... ..... .. ......|.|.+++.+|+
T Consensus 225 ~V~~~p~~~p~~~~v~~G~~v~L~C~~~--~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds 302 (527)
T 3qs9_E 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAV--HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302 (527)
T ss_dssp ESSSCCCCSCCEEEECTTSCEEEEEEEE--ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGC
T ss_pred EEeccCccCCCceEEeCCCeEEEEEEEc--cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccC
Confidence 221 11344577899999999983 388999999965221 11111 11 12345699999999999
Q ss_pred eEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 293 GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 293 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|.|+|.|.|. ....+.|.|...|.....+ ......+..|+.
T Consensus 303 G~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~------------------------------------~~~~~~v~~G~~ 343 (527)
T 3qs9_E 303 GYYTCSSSKH---PSQSALVTIVEKGFINATN------------------------------------SSEDYEIDQYEE 343 (527)
T ss_dssp EEEEEEETTE---EEEEEEEEEC--CEEECCC------------------------------------SCCEECCCTTCC
T ss_pred eEEEEEEEeC---CCceEEEEEEccCcccccc------------------------------------CcccEEEcCCCe
Confidence 9999999988 5566777776655321110 112355678999
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+.|.|.+.|.|.|.+.|++++..+....++. .....|.|.++.. .|+|.|+|.|.|..|....++.|.|..+|
T Consensus 344 v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~-~D~G~YtC~A~N~~g~~~~~~~L~V~~~P 416 (527)
T 3qs9_E 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHK-HQPGEYIFHAENDDAQFTKMFTLNIRRKP 416 (527)
T ss_dssp CCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCT-TCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred EEEEEEEEecCCCEEEEEECCEECcCCcccc----cCCcEEEEecCCc-ccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence 9999999999999999999998885544322 1334689999999 99999999999999998888999888665
No 26
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.95 E-value=4.4e-26 Score=218.42 Aligned_cols=267 Identities=22% Similarity=0.273 Sum_probs=193.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEee-CCeeecc-CCceEEe
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSI-NGQVCQI-GGRADVQ 190 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~-~~~~~~~-~~~~~~~ 190 (516)
|.+. ..+....+.+|+.+.|.|.+. +.+ .+.+.|++ ++..+.. ..++.+.
T Consensus 3 ~~v~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~i~W~~~~g~~~~~~~~~~~~~ 55 (291)
T 1qz1_A 3 LQVD-IVPSQGEISVGESKFFLCQVA--------------------------GDAKDKDISWFSPNGEKLSPNQQRISVV 55 (291)
T ss_dssp CCEE-EESSSEEEETTCCEEEEEEES--------------------------SCCSCCEEEEECTTSCBCCSSCSSEEEE
T ss_pred cceE-ecCCCceEeCCCeEEEEEEeC--------------------------CCCCCcEeEEECCCCeECccCCceEEEE
Confidence 3344 455667899999999999999 765 68999999 7776653 3445443
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCce-EEEEEeece---ee----eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGT---EF----TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-~~~~~~~~~---~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
. .+....|.|.+++.+|+|.|+|.+.|..|.. .....+.+. .+ ....+.+|+.+.+.|.+ .|.|.|.+
T Consensus 56 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~p~~~v 132 (291)
T 1qz1_A 56 WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV---VSSLPPTI 132 (291)
T ss_dssp EEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEE---ECSSCCEE
T ss_pred EcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEe---ccCCCCEE
Confidence 2 4567899999999999999999999988643 233332221 11 23346789999999998 68899999
Q ss_pred ccccccc-----ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCe
Q psy7039 262 SLDALIG-----KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPES 334 (516)
Q Consensus 262 ~W~~~~~-----~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~ 334 (516)
.|.+... ..... .......|.|.++...|+|.|+|.|.|..+.. ...+.+.|..+|.....
T Consensus 133 ~W~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~----------- 200 (291)
T 1qz1_A 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR----------- 200 (291)
T ss_dssp EEEETTSCSSTTCCTTE-EECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEES-----------
T ss_pred EEEECCEEcccCCCceE-EEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCccccc-----------
Confidence 9965211 11111 12345689999999999999999999976443 33455555544422110
Q ss_pred eEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCc--eEEEEcCCeEE
Q psy7039 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR--IKFETSENQTI 412 (516)
Q Consensus 335 ~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~--~~~~~~~~~~~ 412 (516)
.......+..|+.+.|.|.+.|.|.+.+.|++++..+..... ...........
T Consensus 201 -------------------------~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T 1qz1_A 201 -------------------------QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255 (291)
T ss_dssp -------------------------CSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCE
T ss_pred -------------------------ccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcE
Confidence 112344667899999999999999999999999998865431 12223344568
Q ss_pred EEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|.++.. .|.|.|+|.|.|..|..+.++.|.|..
T Consensus 256 L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 256 LTIRNVDK-NDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEecCh-hcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 99999999 999999999999999999999998864
No 27
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=233.11 Aligned_cols=296 Identities=13% Similarity=0.058 Sum_probs=188.7
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ......+..|+.+.|.|.+.
T Consensus 103 ~sL~I~~v~~~D~G~Y~C~a~N~~g~~~---~~~~l~V~---~~p~~~--~~~p~~~~~~~~~~L~C~a~---------- 164 (423)
T 3qs7_E 103 VSMVILKMTETQAGEYLLFIQSEATNYT---ILFTVSIR---NTLLYT--LRRPYFRKMENQDALVCISE---------- 164 (423)
T ss_dssp EEEEESSCCSSSCSEEEEEEEC--CEEE---EEEEEEEC--------C--EEEEEEEECSSSSCEEEEEE----------
T ss_pred EEEEEeecCcccCEEEEEEEEcCCCcEE---EEEEEEEe---cCcccc--ccCCcEeccCCceEEEEEEe----------
Confidence 4699999999999999999999876432 12223332 234332 11223355688889999999
Q ss_pred ccccccccCccceeecCcCceeeEEeeCCeeeccCC---ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG---RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS- 225 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~- 225 (516)
|.|.+.|+|++++..+.... ...+.. .... +...|+|.|+|.|.|..|.....
T Consensus 165 ----------------G~P~P~i~W~k~~~~~~~~~~~~~~~~~~--~~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~ 221 (423)
T 3qs7_E 165 ----------------SVPEPIVEWVLCDSQGESCKEESPAVVKK--EEKV-----LHELFGTDIRCCARNELGRECTRL 221 (423)
T ss_dssp ----------------ESSCCEEEEEEC-------------CEEE--CCSE-----ECCCCSSCEEEEEECSSCEEEEEC
T ss_pred ----------------eecCCeEEEEECCCCCccccccccccccc--cceE-----EecccCeEEEEEEEcCCCCcceee
Confidence 99999999999877543110 000100 0111 16789999999999999876542
Q ss_pred EEeecee-----eeeccccCCceEEEEEEEEccCC-CCCceecccccccc-----eEEE-EE-----ecceeeEEEccCC
Q psy7039 226 AHVTGTE-----FTDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIGK-----RIKE-FV-----TSTTASLNIKNSV 288 (516)
Q Consensus 226 ~~~~~~~-----~~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~~-----~~~~-~~-----~~~~~~l~i~~l~ 288 (516)
..+.+.. .....+.+|+.+.|.|.+ .| .|.|.+.|.+.... .... .. ......|.|.++.
T Consensus 222 ~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~---~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 298 (423)
T 3qs7_E 222 FTIDLNQTPQTTLPQLFLKVGEPLWIRCKA---VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298 (423)
T ss_dssp EEEESSSCCCSSTTEEEEETTSCEEEEEEE---EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCC
T ss_pred EEEEEecCCccCCCceEEeCCCeEEEEEEE---EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecC
Confidence 2222211 123456789999999999 56 67799999652211 1111 11 1234579999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
.+|+|.|+|.|.|. ....+.|.|...|.+...| ....+.+.
T Consensus 299 ~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~------------------------------------~~~~~~v~ 339 (423)
T 3qs7_E 299 RNDTGYYTCSSSKH---PSQSALVTIVEKGFINATN------------------------------------SSEDYEID 339 (423)
T ss_dssp TTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---------------------------------------CEECCC
T ss_pred HHHCEEEEEEEecC---CCceEEEEEEeCCcceEcC------------------------------------CCccEEec
Confidence 99999999999998 5667778887655321110 11245677
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+|+.+.|.|.+.|.|.|.+.|++++..+..+.... .....+.+..... .|+|.|+|.|.|..|..+.++.|.|..
T Consensus 340 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~~~~~~~~~-~D~G~YtC~A~N~~G~~~~s~~L~v~~ 414 (423)
T 3qs7_E 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHK-HQPGEYIFHAENDDAQFTKMFTLNIRS 414 (423)
T ss_dssp TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC----SSSSEEEEECCCT-TCCSCEEEEEEETTEEEEEEEEEC---
T ss_pred CCCeEEEEEEEEEcCCCeEEEEECCEECCCccccc----cCCcEEEEEeccc-ccCEEEEEEEEcCCceEEEEEEEEEec
Confidence 89999999999999999999999998875432100 0011111245567 899999999999999999999999999
Q ss_pred CCCCC
Q psy7039 449 KPSPP 453 (516)
Q Consensus 449 ~p~~P 453 (516)
.|.+|
T Consensus 415 ~p~~~ 419 (423)
T 3qs7_E 415 GTKHH 419 (423)
T ss_dssp -----
T ss_pred CCccc
Confidence 98887
No 28
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.94 E-value=4.9e-25 Score=222.52 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=173.5
Q ss_pred CCCeEEEEEEEecCCCCCCCCC-CCcc---------eEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASK-PTAP---------IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~-~~~~---------~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+.+.|+|...+..+...... .... +.....+..+.+. ..+..+.|.+|+++.|.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~-~~~~~v~V~~G~~v~L~C~v~--------- 73 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTV-YEAAAVEVDVSASITLQVLVD--------- 73 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECS---------
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcce-eccccEEEecCCcEEEEEEEE---------
Confidence 3567899999887754432111 1111 1110001112222 334478999999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|.+.+.|++++..+.....+.. ......+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 74 -----------------g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 135 (423)
T 3qs7_E 74 -----------------APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135 (423)
T ss_dssp -----------------CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEE
T ss_pred -----------------cCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 999999999999887764332211 12234579999999999999999999998887665544
Q ss_pred eceee------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEc-cCCCCCceEEEEEEEe
Q psy7039 229 TGTEF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIK-NSVRKDSGIYKIEAKN 301 (516)
Q Consensus 229 ~~~~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~-~l~~~d~g~y~c~a~n 301 (516)
.+... ....+..|....+.|.+ .|.|.|.++|.+.................... -+...|+|.|+|.|.|
T Consensus 136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a---~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N 212 (423)
T 3qs7_E 136 SIRNTLLYTLRRPYFRKMENQDALVCIS---ESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARN 212 (423)
T ss_dssp EEC-----CEEEEEEEECSSSSCEEEEE---EESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEEC
T ss_pred EEecCccccccCCcEeccCCceEEEEEE---eeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEc
Confidence 33210 11123346667789988 89999999997633211100000000001111 1257899999999999
Q ss_pred cCCCcce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe
Q psy7039 302 DYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380 (516)
Q Consensus 302 ~~g~~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~ 380 (516)
..|.... .+.|.|...|..+ +....+.+|+.+.|.|.+.
T Consensus 213 ~~G~~~~~~~~l~V~~~p~~~----------------------------------------~~~~~v~~G~~v~L~C~~~ 252 (423)
T 3qs7_E 213 ELGRECTRLFTIDLNQTPQTT----------------------------------------LPQLFLKVGEPLWIRCKAV 252 (423)
T ss_dssp SSCEEEEECEEEESSSCCCSS----------------------------------------TTEEEEETTSCEEEEEEEE
T ss_pred CCCCcceeeEEEEEecCCccC----------------------------------------CCceEEeCCCeEEEEEEEE
Confidence 9987643 3556665444332 1246788999999999999
Q ss_pred e-ecCCceEEEECCeecCCCCceEEEE------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 381 G-RPKPTPIWTVNGDEVSPDGRIKFET------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 381 g-~p~~~i~W~~~~~~l~~~~~~~~~~------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
| .|.+.|.|++++..+.....+.... ......|.|.++.. .|+|.|+|.|.|. .+.++.|.|..+|
T Consensus 253 g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~---~~~~~~L~V~~~p 325 (423)
T 3qs7_E 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR-NDTGYYTCSSSKH---PSQSALVTIVEKG 325 (423)
T ss_dssp ESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT-TTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred cCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH-HHCEEEEEEEecC---CCceEEEEEEeCC
Confidence 8 6778999999998775443221111 11124699999999 9999999999998 6777888887655
No 29
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=235.31 Aligned_cols=288 Identities=14% Similarity=0.105 Sum_probs=186.3
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcccccccc
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVR 155 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~ 155 (516)
.+++.|.|.|+|.|.|..|..... ...+.+. .+|.+ ++..+.+.+|+.+.|.|.+.+
T Consensus 197 ~~~~~d~G~Y~C~A~N~~G~~~~~--~~~l~V~---~~p~~---~p~~~~v~~G~~v~L~C~~~~--------------- 253 (527)
T 3qs9_E 197 VLHELFGTDIRCCARNELGRECTR--LFTIDLN---QTPQT---TLPQLFLKVGEPLWIRCKAVH--------------- 253 (527)
T ss_dssp EECCCCSSCEEEEEECSSCEEEEE--CEEEESS---SCCCC---SCCEEEECTTSCEEEEEEEEE---------------
T ss_pred eccccCCEEEEEEEEeCCCcccce--EEEEEEe---ccCcc---CCCceEEeCCCeEEEEEEEcc---------------
Confidence 355889999999999988865431 1222222 23332 445688999999999999952
Q ss_pred ccCccceeecCcCceeeEEeeCCeeeccCCceEEee------cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 156 ANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT------TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 156 ~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
+.|.+.++|++++..+.....+.... ......|.|.+++.+|+|.|+|.+.|. ......+.+.
T Consensus 254 ----------g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~-~~~~~~L~V~ 322 (527)
T 3qs9_E 254 ----------VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-PSQSALVTIV 322 (527)
T ss_dssp ----------SSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE-EEEEEEEEEC
T ss_pred ----------CCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC-CCceEEEEEE
Confidence 78999999999998776543332211 112357999999999999999999987 2222222222
Q ss_pred ceee-------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEE--EEecceeeEEEccCCCCCceEEEEEEE
Q psy7039 230 GTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE--FVTSTTASLNIKNSVRKDSGIYKIEAK 300 (516)
Q Consensus 230 ~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~l~i~~l~~~d~g~y~c~a~ 300 (516)
...+ ....+.+|+.+.+.|.+ .|.|.|.+.|.+... .+.. ........|.|.++..+|+|.|+|.|.
T Consensus 323 ~~p~i~~~~~~~~~~v~~G~~v~L~C~~---~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 398 (527)
T 3qs9_E 323 EKGFINATNSSEDYEIDQYEEFCFSVRF---KAYPQIRCTWTFSRK-SFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398 (527)
T ss_dssp --CEEECCCSCCEECCCTTCCCCEEEEE---EEESCCEEEEEETTE-EEECBCCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred ccCccccccCcccEEEcCCCeEEEEEEE---EecCCCEEEEEECCE-ECcCCcccccCCcEEEEecCCcccCEEEEEEEE
Confidence 1111 12356789999999998 888999999975211 1100 012245689999999999999999999
Q ss_pred ecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe
Q psy7039 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380 (516)
Q Consensus 301 n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~ 380 (516)
|..|.....+.|.|..+|..... ..| ..|.|.+.
T Consensus 399 N~~g~~~~~~~L~V~~~P~i~~~--------------------------------------------~~~--~~l~C~a~ 432 (527)
T 3qs9_E 399 NDDAQFTKMFTLNIRRKPQVLAE--------------------------------------------ASA--SQASCFSD 432 (527)
T ss_dssp ETTEEEEEEEEEC--CCCEEEEC--------------------------------------------CCC--E---EEEE
T ss_pred eCCCcEEEEEEEEEecCCeEEEe--------------------------------------------CCC--CEEEEEEE
Confidence 99999888888888755432100 011 24799999
Q ss_pred eecCCceEEEECCeecCC-CCc-----e-----EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 381 GRPKPTPIWTVNGDEVSP-DGR-----I-----KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 381 g~p~~~i~W~~~~~~l~~-~~~-----~-----~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|.|.|.|++++..... ... . ............+.-... .|.|.|+|.|.|..|..+..+.|.|..
T Consensus 433 g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~d~G~Y~C~A~N~~G~~~~~~~L~V~~ 510 (527)
T 3qs9_E 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA-IKGFLVKCCAYNSLGTSCETILLNSPG 510 (527)
T ss_dssp CSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCS-SCSCEEEEEEECSSCEEEEEEEC----
T ss_pred EEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEc-CCCEEEEEEEEeCCCCceeEEEEecCC
Confidence 999999999987654311 000 0 001111122333433445 899999999999999999988886643
No 30
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=209.89 Aligned_cols=271 Identities=15% Similarity=0.185 Sum_probs=191.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
..+.+.+|+.+.|.|.... +.|.+.+.|++++..+....++.+...+....|.|.
T Consensus 9 ~~~~v~eg~~v~l~~~~~~-------------------------~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~ 63 (312)
T 2y23_A 9 VVVNVDDDGVISLNFECDK-------------------------MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63 (312)
T ss_dssp CEEEECTTCCEEEEEECSS-------------------------CCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEES
T ss_pred eeEEEecCCeEEEEEEEeC-------------------------CCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEEC
Confidence 3477889999999887752 689999999999999988889988888888899999
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEeece-----------------ee---eeccccCCceEEEEEEEEccC-CCCCce
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVTGT-----------------EF---TDNNVHEGKAYEYRVSAVNAA-GTEKPK 260 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-----------------~~---~~~~l~~g~~~~~~~~~~~~~-g~p~p~ 260 (516)
+++.+|+|.|+|.+.|..|... +..+... .. ....+.+|..+.+.|.+ . |.|.+.
T Consensus 64 ~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~---~~~~p~~~ 139 (312)
T 2y23_A 64 DLGMDDLGIYSCDVTDTDGIAS-SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA---EKLSGNAK 139 (312)
T ss_dssp SCCGGGCEEEEEEESSSCCCCE-EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEE---SCCCSSCE
T ss_pred cCCccCCEEEEEEEEeCCCcEE-EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEE---EeCCCCCE
Confidence 9999999999999999887554 2322211 00 24567789999999998 5 889999
Q ss_pred eccccc-----ccceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCC---CCceeeec
Q psy7039 261 ISLDAL-----IGKRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT---GPIDYTTV 330 (516)
Q Consensus 261 i~W~~~-----~~~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~---~p~~~~~~ 330 (516)
+.|.+. ...++.+... .....|.|.++..+|+|.|+|.|.|..+. ....+.+........ .++.....
T Consensus 140 v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (312)
T 2y23_A 140 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVLVGDVFKKLQKEAEFQRQEW 217 (312)
T ss_dssp EEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEECTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--EEEEEEEcchhhhhhcccccccccch
Confidence 999652 1222333322 44566999999999999999999764433 233333311000000 00000000
Q ss_pred cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCC
Q psy7039 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 331 ~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
+.-.+|. + .......+..|+.+.|.|.+.+.|.+ .+.|++++..+..+.++.+. .+
T Consensus 218 ------~~~~~p~------~---------~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~ 274 (312)
T 2y23_A 218 ------IRKQGPH------F---------VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DG 274 (312)
T ss_dssp ------HHHHSSE------E---------EEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------C
T ss_pred ------hhccCCc------e---------eecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CC
Confidence 0000000 0 01122578899999999999999998 99999999988755565544 44
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
...|.|.++.. .|+|.|+|.|.|..|....++.|++.
T Consensus 275 ~~~L~I~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 275 ICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEECSCSG-GGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEECcCCH-HHCEEEEEEEEcCCCceeeeeEEEec
Confidence 57899999999 99999999999999999888887653
No 31
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.93 E-value=1.8e-26 Score=225.88 Aligned_cols=266 Identities=19% Similarity=0.228 Sum_probs=132.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+..+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+ ....
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~ 62 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPP--------------------------GGGPMGPTVWVKDGTGLVPSERVLV----GPQR 62 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCC--------------------------CCCCCcceEEEECCeeCCCcccEEe----ccce
Confidence 346778899999999999998 65 6789999999988876655544 3468
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee---------------------------------eeccccCCceE
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF---------------------------------TDNNVHEGKAY 244 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------------------------------~~~~l~~g~~~ 244 (516)
|.|.+++.+|+|.|+|.+.|. |.......+.+... ....+..|..+
T Consensus 63 L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v 141 (334)
T 1ry7_B 63 LQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTV 141 (334)
T ss_dssp ---------------------------------------------------------CCCCSCCTTCCCCEEEEETTCCE
T ss_pred EEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcE
Confidence 999999999999999999987 55444333222110 11245679999
Q ss_pred EEEEEEEccCCCCCceecccccccc-----eE-EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 245 EYRVSAVNAAGTEKPKISLDALIGK-----RI-KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 245 ~~~~~~~~~~g~p~p~i~W~~~~~~-----~~-~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.|.|.+ .|.|.|.+.|.+.... .. ..........|.|.++...|+|.|+|.|.|..|.....+.|.|...+
T Consensus 142 ~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 218 (334)
T 1ry7_B 142 RFRCPA---AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS 218 (334)
T ss_dssp EEECCC---CCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEEEc---cCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCC
Confidence 999987 7889999999752111 00 11123455689999999999999999999999888888888887654
Q ss_pred CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCe
Q psy7039 319 GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGD 394 (516)
Q Consensus 319 ~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~ 394 (516)
..+.. +. ...+....+..|+.+.|.|.+.|.|.+.+.|++ ++.
T Consensus 219 ~~~p~-~~--------------------------------~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~ 265 (334)
T 1ry7_B 219 PHRPI-LQ--------------------------------AGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGS 265 (334)
T ss_dssp CSSCB-CC--------------------------------TTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGC
T ss_pred CCCCc-eE--------------------------------ecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCc
Confidence 32110 00 012345678999999999999999999999999 666
Q ss_pred ecCCCCc--eEEEEc-------CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCC
Q psy7039 395 EVSPDGR--IKFETS-------ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452 (516)
Q Consensus 395 ~l~~~~~--~~~~~~-------~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~ 452 (516)
.+..+.. +.+... .....|.|.++.. .|.|.|+|.|.|..|....++.|.|...|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 331 (334)
T 1ry7_B 266 KVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTF-EDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331 (334)
T ss_dssp SBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCT-TSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred cccCCCCeeEEEeecCccccccccccEEEEccCCH-HHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence 5543322 111111 1123699999999 9999999999999999999999999876644
No 32
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.93 E-value=2.5e-25 Score=220.59 Aligned_cols=273 Identities=15% Similarity=0.162 Sum_probs=200.3
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc--------------CCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------GGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..|+.
T Consensus 3 ~v~~~~G~~v~L~C~~~--------------------------~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 56 (363)
T 1wio_A 3 VVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 56 (363)
T ss_dssp EEEEETTSCEEECCCCT--------------------------TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEE
T ss_pred eEEEeCCCeEEEEEEec--------------------------CCCceEEEEEeCCccceeccCccEEecCCccccccee
Confidence 36788999999999999 899999999998754211 12333
Q ss_pred Eee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 189 VQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 189 ~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
+.. .....+|.|.+++.+|+|.|+|.+.|..+..... +..... ....+.+|+.+.|.|.+ .|.|.|.+.|.
T Consensus 57 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~l~--V~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W~ 131 (363)
T 1wio_A 57 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTHLLQGQSLTLTLES---PPGSSPSVQCR 131 (363)
T ss_dssp CCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEEEEEEEE--EEEEEESSCSSEESBSCEEEEEEC---CTTCCCCEEEE
T ss_pred eeeccccCCeEEEEECCCCHHHCEEEEEEEEECCCcEEEE--EEeCCCCCceEEecCCCEEEEEEc---CCCCCCeEEEE
Confidence 222 3346689999999999999999998875433222 221111 22467789999999988 67899999998
Q ss_pred ccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCC
Q psy7039 265 ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~ 344 (516)
+..... ......|.|.++..+|+|.|+|.|.|..+.....+.+.|...|..
T Consensus 132 ~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~------------------------ 182 (363)
T 1wio_A 132 SPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA------------------------ 182 (363)
T ss_dssp CSSSCE-----EEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS------------------------
T ss_pred cCCCcc-----cccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC------------------------
Confidence 654332 235678999999999999999999998766666666666644432
Q ss_pred CCCCceeeccccccccccccEEEEcCCeEEEEEEEee-----ecCCceEEEECCeecCC--------CCceEEEE-----
Q psy7039 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-----RPKPTPIWTVNGDEVSP--------DGRIKFET----- 406 (516)
Q Consensus 345 ~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-----~p~~~i~W~~~~~~l~~--------~~~~~~~~----- 406 (516)
+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. +.++.+..
T Consensus 183 -----------------~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (363)
T 1wio_A 183 -----------------SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDP 245 (363)
T ss_dssp -----------------EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSS
T ss_pred -----------------CCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccch
Confidence 13456789999999998877 78889999999987755 44554432
Q ss_pred -----cCCeEEEEEcCceecCCceEEEEEEEcC--CCceeEEEEEEEecCCCCCCCCccccccc--CCeEEEEeeCC
Q psy7039 407 -----SENQTIYRNKSAKRATDSGSYTIQLVNT--VGSDSASCKVYVVDKPSPPQGPLDVSDIT--PESCSLSWKPP 474 (516)
Q Consensus 407 -----~~~~~~l~i~~~~~~~~~g~y~c~a~n~--~G~~s~s~~l~v~~~p~~P~~~l~~~~~~--~~~~~l~W~~p 474 (516)
......|.|.++.. .|+|.|+|.|.|. .|..+..+.|.|...+..+ ..|...... ...+.+.|...
T Consensus 246 ~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~-~~l~C~~~g~p~p~~~i~W~~~ 320 (363)
T 1wio_A 246 KLQMGKKLPLHLTLPQALP-QYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQ-KNLTCEVWGPTSPKLMLSLKLE 320 (363)
T ss_dssp CCBCCSSSSCEEEESSBCG-GGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCS-SSEEEEEESSCCTTCCEEEECS
T ss_pred hhhcccCCceEEEEccCCc-CcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCC-eeEEEEEccccCCCccEEEEeC
Confidence 22234899999999 9999999999999 9998888899888655444 344433222 23456899753
No 33
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.93 E-value=1.6e-25 Score=227.58 Aligned_cols=310 Identities=15% Similarity=0.113 Sum_probs=202.5
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....+|.|.+++..|.|.|+|.|.|..+.... ....+.+.....+|.+....+.. .+.+|+.+.|.|.+.
T Consensus 72 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~--~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~~~l~C~~~------- 141 (438)
T 1qgc_4 72 RTDFTLTIDPVEADDVATYYCQQSNEVPLTFG--AGTKLDLKRADAAPTVSIFPPSS-EQLTSGGASVVCFLN------- 141 (438)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEECSSTTCCBC--CCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEE-------
T ss_pred CCcEEEEeCCCcCcCCeeEEEEEecCCCcccc--CceeEEecCCCCCCEEEecCCCh-hhccCCceEEEEEEc-------
Confidence 34568999999999999999999987653221 12233333333466655222222 234688999999998
Q ss_pred CccccccccccCccceeecC-cCce-eeEEeeCCeeeccCCce--EEee--cCC---eeEEEeccCCCCCCeeEEEEEEc
Q psy7039 147 SPLRALGVRANSTKGWVKLS-EPFL-NHGWSINGQVCQIGGRA--DVQT--TKS---ETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~p~~-~i~W~~~~~~~~~~~~~--~~~~--~~~---~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+ .|.+ .+.|++++..+...... .... .+. .+.|.|.++..+|+|.|+|.+.|
T Consensus 142 -------------------g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 202 (438)
T 1qgc_4 142 -------------------NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATH 202 (438)
T ss_dssp -------------------EEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEE
T ss_pred -------------------cccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEe
Confidence 5 6666 99999999888654111 1111 111 35899999999999999999999
Q ss_pred CCCceEEEEEeec-------eeeeeccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------
Q psy7039 218 NLGTATASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G------------------- 268 (516)
Q Consensus 218 ~~g~~~~~~~~~~-------~~~~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~------------------- 268 (516)
..+.......+.. .......+.+|+.+.|.|.+ .|.| .+.+.|.+.. +
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~ 279 (438)
T 1qgc_4 203 KTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTA---SGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYP 279 (438)
T ss_dssp TTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECC
T ss_pred cccCCceecccccccceeEEecCCceEEecCCcEEEEEEE---cccccCCcEEEEEECCCCCCcEEEEEEeecCCceecC
Confidence 8887433333221 11123457789999999998 6777 6789996531 1
Q ss_pred ----ceEEEEEe--cceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 269 ----KRIKEFVT--STTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 269 ----~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
.++.+... .....|.|.+++.+|+|.|+|.|.|..+ .......+.|...+..+ |....
T Consensus 280 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~--P~v~~--------- 348 (438)
T 1qgc_4 280 DSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTP--PSVYP--------- 348 (438)
T ss_dssp GGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBC--CEEEE---------
T ss_pred cccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCC--CeEEE---------
Confidence 12222221 2356899999999999999999998544 22234566665432111 10000
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC---eEE
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN---QTI 412 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~---~~~ 412 (516)
......+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+. .+.
T Consensus 349 -----------------------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~ 405 (438)
T 1qgc_4 349 -----------------------LAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSS 405 (438)
T ss_dssp -----------------------ECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEE
T ss_pred -----------------------cCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEE
Confidence 0001124579999999999997 877 999999987764211111111111 136
Q ss_pred EEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 413 l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
|.|..+.. .| |.|+|.|.|..|.......+
T Consensus 406 L~i~~~~~-~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 406 VTVPSSTW-PS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEEEHH-HH-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEehhhc-CC-ceEEEEEEeCCCCcceeeec
Confidence 89988887 78 99999999999987665544
No 34
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.93 E-value=2.4e-24 Score=215.79 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=208.2
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEE
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADV 189 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~ 189 (516)
..+|.|. ..+..+.+.+|+.+.|.|.+. + .|.+.+.|++++..+....+ .+
T Consensus 4 ~~~P~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~-~~ 55 (395)
T 1bih_A 4 DKYPVLK-DQPAEVLFRENNPTVLECIIE--------------------------GNDQGVKYSWKKDGKSYNWQEH-NA 55 (395)
T ss_dssp -CCCEEC-CCCSEEEEETTSCEEECCCEE--------------------------SCCSSCEEEEEESSSBCCTTTT-TE
T ss_pred CCCCEee-cCCCceEEeCCCEEEEEEEEe--------------------------cCCCCceEEEEECCcCcccccc-eE
Confidence 3578887 667789999999999999999 7 88999999999988876543 22
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec-----eeeeeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG-----TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~-----~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.......+|.|.+++.+|+|.|+|.+.|..|.... .+.+.. .......+.+|+.+.|.|.+ ..|.|.+.+
T Consensus 56 ~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~--~~~~p~~~v 133 (395)
T 1bih_A 56 ALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVL--PNAYPKPLI 133 (395)
T ss_dssp EECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCC--CEEESCCEE
T ss_pred EEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecC--CCCCCCCeE
Confidence 22345568999999999999999999998776542 111111 11233456789999999984 257788999
Q ss_pred cccccc------------cceEEEEEecceeeEEEccCCCCCce---EEEEEEEecCCCcceeEEEEEecCCCCCCCCce
Q psy7039 262 SLDALI------------GKRIKEFVTSTTASLNIKNSVRKDSG---IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326 (516)
Q Consensus 262 ~W~~~~------------~~~~~~~~~~~~~~l~i~~l~~~d~g---~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~ 326 (516)
.|.+.. ..+.. ....+.|.|.++...|.| .|+|.|.|..|................+..+..
T Consensus 134 ~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (395)
T 1bih_A 134 TWKKRLSGADPNADVTDFDRRIT---AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210 (395)
T ss_dssp EEEEEETTSCGGGCCCCCCTTEE---ECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCC
T ss_pred EEEecCCCcCcccccccccccEE---EcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccccccccc
Confidence 996632 12222 234568999999999999 999999999888654433322221111100000
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKF 404 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~ 404 (516)
. .+... ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++..
T Consensus 211 ~------~~~p~---------------------~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 263 (395)
T 1bih_A 211 G------EPVPQ---------------------YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR 263 (395)
T ss_dssp C------CCEEE---------------------EECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES
T ss_pred C------CcCce---------------------ecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE
Confidence 0 00000 01245678999999999999999999999999998875433 2322
Q ss_pred EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE-EEEEEEecCCCCCCCCcc-cccccCCeEEEEeeC
Q psy7039 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA-SCKVYVVDKPSPPQGPLD-VSDITPESCSLSWKP 473 (516)
Q Consensus 405 ~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~-s~~l~v~~~p~~P~~~l~-~~~~~~~~~~l~W~~ 473 (516)
........|.|.++.. .|.|.|+|.|.|..|.... ++.|.|..+|.....+.. .....++.+.|.+..
T Consensus 264 ~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~ 333 (395)
T 1bih_A 264 HNRTSGKRLLFKTTLP-EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV 333 (395)
T ss_dssp CSSSTTSEEEESSCCG-GGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEE
T ss_pred EecCCCceEEEccCCh-hhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEE
Confidence 2222334799999999 9999999999999998654 888888876642211111 333456677777653
No 35
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.93 E-value=1.8e-24 Score=214.29 Aligned_cols=262 Identities=12% Similarity=0.120 Sum_probs=192.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..+ ...+.+......| ...+.+|+.+.|.|.+.
T Consensus 65 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~-------~~~l~V~~~~~~~--------~~~v~~G~~v~l~C~~~-------- 121 (363)
T 1wio_A 65 GNFPLIIKNLKIEDSDTYICEVEDQKE-------EVQLLVFGLTANS--------DTHLLQGQSLTLTLESP-------- 121 (363)
T ss_dssp TCCCEEECSCCGGGCEEEEEEETTEEE-------EEEEEEEEEEESS--------CSSEESBSCEEEEEECC--------
T ss_pred CeEEEEECCCCHHHCEEEEEEEEECCC-------cEEEEEEeCCCCC--------ceEEecCCCEEEEEEcC--------
Confidence 356799999999999999999988643 1222222111111 13568999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+. .....|.|.+++.+|+|.|+|.+.+..+.......
T Consensus 122 ------------------~~p~~~v~W~~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~ 173 (363)
T 1wio_A 122 ------------------PGSSPSVQCRSPRGKNI----------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 173 (363)
T ss_dssp ------------------TTCCCCEEEECSSSCEE----------EESSEEEECSBCGGGCEECEEEEEETTEEEEECCE
T ss_pred ------------------CCCCCeEEEEcCCCccc----------ccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEE
Confidence 88999999999875442 13458999999999999999999987665555444
Q ss_pred eeceee----eeccccCCceEEEEEEEEccCC-----CCCceecccccc-------------cceEEEEE----------
Q psy7039 228 VTGTEF----TDNNVHEGKAYEYRVSAVNAAG-----TEKPKISLDALI-------------GKRIKEFV---------- 275 (516)
Q Consensus 228 ~~~~~~----~~~~l~~g~~~~~~~~~~~~~g-----~p~p~i~W~~~~-------------~~~~~~~~---------- 275 (516)
+.+..+ ....+.+|+.+.|.|.+ .| .|.|.+.|.+.. .....+..
T Consensus 174 l~v~~~p~~~~~~~~~~G~~v~l~C~~---~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (363)
T 1wio_A 174 IVVLAFQKASSIVYKKEGEQVEFSFPL---AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMG 250 (363)
T ss_dssp ECEECCSCSEEEEEEETBCCEEEECCC---CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCC
T ss_pred EEEecCCCCCCceEEecCCEEEEEEEE---ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcc
Confidence 333222 23446779999999977 44 678999996521 22222211
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEec--CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKND--YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
......|.|.++..+|+|.|+|.|.|. .|.....+.|.|...
T Consensus 251 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v------------------------------------ 294 (363)
T 1wio_A 251 KKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA------------------------------------ 294 (363)
T ss_dssp SSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEE------------------------------------
T ss_pred cCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEe------------------------------------
Confidence 112448999999999999999999999 888777777777521
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCc--eEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT--PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~--i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
.|+.+.|.|.+.|.|.|. +.|++++..+.. ...|.|.++.. .|+|.|+|.|
T Consensus 295 ---------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~-----------~~~l~i~~v~~-~d~G~Y~C~a 347 (363)
T 1wio_A 295 ---------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV-----------SKREKAVWVLN-PEAGMWQCLL 347 (363)
T ss_dssp ---------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE-----------EESSSEEEESS-CCSEEEEEEE
T ss_pred ---------------cCCCeeEEEEEccccCCCccEEEEeCCCceee-----------eeeeeeeeecc-ccceeEEEEE
Confidence 256688999999999987 999999976642 13467788899 9999999999
Q ss_pred EcCCCceeEEEEEEEe
Q psy7039 432 VNTVGSDSASCKVYVV 447 (516)
Q Consensus 432 ~n~~G~~s~s~~l~v~ 447 (516)
.|. |....+..+.|.
T Consensus 348 ~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 348 SDS-GQVLLESNIKVL 362 (363)
T ss_dssp CSS-SSCCEEEEEEEC
T ss_pred ecC-CeEEEecceEec
Confidence 965 555556666653
No 36
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.93 E-value=9.7e-23 Score=203.64 Aligned_cols=311 Identities=15% Similarity=0.144 Sum_probs=206.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~---~~P~~~-~~~~~~~~~~g~~~~l~C~~~-------- 125 (389)
T 2jll_A 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQ---KSMYLDIE---YAPKFI-SNQTIYYSWEGNPINISCDVK-------- 125 (389)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEE---EEEEEEEE---EEEEEC-CSCCEEEECTTCCEEEEECEE--------
T ss_pred CcceEEEcccChhhCEEEEEEEEeCCCCcc---eEEEEEEE---eCCEEe-cCcceEEeccCCEEEEEEEEE--------
Confidence 457899999999999999999999887642 12223322 356655 444556788999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.... ++.+...+....|.|.+++..|+|.|+|.+.|..|.....
T Consensus 126 ------------------g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~ 187 (389)
T 2jll_A 126 ------------------SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE 187 (389)
T ss_dssp ------------------EESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred ------------------ecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence 99999999999999887653 6666667777899999999999999999999999987665
Q ss_pred EEeeceee-------eeccccCCceEEEEEEEEcc-CCCCCc--eeccccccc-ceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 AHVTGTEF-------TDNNVHEGKAYEYRVSAVNA-AGTEKP--KISLDALIG-KRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 ~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~-~g~p~p--~i~W~~~~~-~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+..... .... ..+....+.|..... .|.+.. .+.|..... .............+.|.++.+.+.|.
T Consensus 188 ~~l~v~~~P~~P~~~~~~~-~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 266 (389)
T 2jll_A 188 YILALADVPSSPYGVKIIE-LSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYE 266 (389)
T ss_dssp EEEEECCCCCCCEEEEEEE-ECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEE
T ss_pred EEEEecCCCCCCcceEEee-ccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEE
Confidence 54332111 1111 123455566653211 222322 345544222 22222333455789999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC-CCCCC-ceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG-PPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~-~p~~p-~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
|+|.|.|..|....+..+.+...+. +|..| +.....+.+++.|+|.+|.+ ++.+|.+|.
T Consensus 267 ~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~------------------ 327 (389)
T 2jll_A 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDD-GGAPILEYI------------------ 327 (389)
T ss_dssp EEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEEEETTTEEEEEECCCCC-CSSCCCEEE------------------
T ss_pred EEEEEEcCCccCCCCcceEEEecCCCCCCCCccccccCcCCEEEEEEECCCC-CCCcccEEE------------------
Confidence 9999999999876554455544332 23222 55566799999999998764 566777772
Q ss_pred EEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 373 ~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
|.|...+.. ..............+.|.+|.+ ...|.|++.|.|..|.+..+. +.+.+.+
T Consensus 328 --------------v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~~-~t~Y~~~V~A~n~~G~s~~s~-~~~~T~~ 386 (389)
T 2jll_A 328 --------------VKYRSKDKE---DQWLEKKVQGNKDHIILEHLQW-TMGYEVQITAANRLGYSEPTV-YEFSMPP 386 (389)
T ss_dssp --------------EEEEC--------CCBCCEECTTCCEEEECSCCT-TCEEEEEEEEEC-CCBCCCEE-EEEECCC
T ss_pred --------------EEEEeCCCC---cceeEeeccCCcceEEeCCcCC-CCEEEEEEEEEcCCcCCCcee-eEecCCC
Confidence 111111100 0000111223445688999999 999999999999999865553 3555543
No 37
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.4e-24 Score=205.30 Aligned_cols=258 Identities=18% Similarity=0.171 Sum_probs=179.2
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. + .+.|++++..+ .....
T Consensus 11 ~~P~i~-~~~~~~~v~~G~~v~l~C~~~--------------------------~----~i~W~~~~~~~-----~~~~~ 54 (290)
T 2o26_X 11 SPPSIH-PAQSELIVEAGDTLSLTCIDP--------------------------D----FVRWTFKTYFN-----EMVEN 54 (290)
T ss_dssp -CCEES-SCSSEEEEETTSCEEEEEECT--------------------------T----EEEEEEECSSS-----CEEEE
T ss_pred CCCEEe-CCCCeEEEcCCCcEEEEECCC--------------------------C----cEEEecCCcce-----eeecC
Confidence 467777 567788999999999999998 6 89999988766 11111
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCC-ceecc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEK-PKISL 263 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W 263 (516)
. ...|.|.+++.+|+|.|+|.+.| |. .....+.+.. .....+.+|+.+.+.|.+ .| |. +.+.|
T Consensus 55 ~--~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~-p~~~~v~W 125 (290)
T 2o26_X 55 K--KNEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPL---TD-PQVSQYSL 125 (290)
T ss_dssp C--SSEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCB---SC-CSCEEEEE
T ss_pred C--CceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEeCCCcccccccceEEecCCeEEEeCcC---CC-CCCceEEE
Confidence 2 27999999999999999999998 43 3333222211 122345679999999987 55 66 89999
Q ss_pred cccccce----EEEEEecceeeEEEccCCCCCce-EEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 264 DALIGKR----IKEFVTSTTASLNIKNSVRKDSG-IYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 264 ~~~~~~~----~~~~~~~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
....+.. ..... .....|.|.++..+|+| .|+|.|.|..+.. +..+.+.|...+..+.. +.
T Consensus 126 ~~~~g~~l~~~~~~~~-~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~-i~----------- 192 (290)
T 2o26_X 126 IECDGKSLPTDLTFVP-NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV-VS----------- 192 (290)
T ss_dssp EETTSCCCCTTCEEEE-ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCE-EE-----------
T ss_pred EeCCCcCCCCCCceee-CCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCc-cc-----------
Confidence 3211111 11111 23358999999999999 9999999985553 33567777643221110 00
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCee----cCCCCceEEE---EcCC
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDE----VSPDGRIKFE---TSEN 409 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~----l~~~~~~~~~---~~~~ 409 (516)
..+....+..|+.+.|.|.+.|.|.+. +.|++++.. +......... ....
T Consensus 193 ----------------------~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T 2o26_X 193 ----------------------VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYER 250 (290)
T ss_dssp ----------------------CSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEE
T ss_pred ----------------------cCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEE
Confidence 112334678999999999999999996 999999876 2322222222 1123
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 251 ~~~L~I~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 251 QETLTISSARV-DDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp EEEEEESSCCS-SSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred EEEEEEcCCCc-ccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 46899999999 99999999999999999888888887654
No 38
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.92 E-value=1.7e-24 Score=217.49 Aligned_cols=304 Identities=19% Similarity=0.247 Sum_probs=206.7
Q ss_pred cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceE
Q psy7039 109 PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRAD 188 (516)
Q Consensus 109 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~ 188 (516)
....+|.|....+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+......+
T Consensus 12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~k~g~~l~~~~~~~ 65 (404)
T 3p3y_A 12 ELTQPPTITKQSAKDHIVDPRDNILIECEAK--------------------------GNPAPSFHWTRNSRFFNIAKDPR 65 (404)
T ss_dssp -CCCCCCEEEECCTTCEECSSSCCCCCEEEC--------------------------CSSCCEEEEEETTEECCGGGCSS
T ss_pred hccCCCcccccCCccEEEcCCCCEEEEEEec--------------------------CCCCCeEEEEECCEEeeeecCCc
Confidence 3346787775567788999999999999999 99999999999998876443333
Q ss_pred EeecCCeeEEEec----cCCCCCCeeEEEEEEcCCCceE-EEEEeeceee--------eeccccCCceEEEEEEEEccCC
Q psy7039 189 VQTTKSETVLDIP----FCSRSDTGHYSLTLENNLGTAT-ASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 189 ~~~~~~~~~l~i~----~~~~~d~g~Y~c~~~~~~g~~~-~~~~~~~~~~--------~~~~l~~g~~~~~~~~~~~~~g 255 (516)
+........|.|. +++.+|+|.|+|.+.|..|... ....+.+... ....+.+|+.+.+.|.+ ..|
T Consensus 66 ~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~--~~~ 143 (404)
T 3p3y_A 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNP--PPG 143 (404)
T ss_dssp CBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCC--CCC
T ss_pred ceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCC--CCC
Confidence 3323344456554 8889999999999999888764 2333222111 12356789999999986 367
Q ss_pred CCCceecccccccce---EEEEEecceeeEEEccCCCCC-ceEEEEEEEecCCCcc---eeEEEEEecCCCCCCCCceee
Q psy7039 256 TEKPKISLDALIGKR---IKEFVTSTTASLNIKNSVRKD-SGIYKIEAKNDYGIDM---ADIEVVVVSKPGPPTGPIDYT 328 (516)
Q Consensus 256 ~p~p~i~W~~~~~~~---~~~~~~~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~---~~~~l~v~~~p~~p~~p~~~~ 328 (516)
.|.+.+.|.+..... .........+.|.|.++...| .|.|+|.|.|..|... ....+.+...+.....+..+
T Consensus 144 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~- 222 (404)
T 3p3y_A 144 LPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF- 222 (404)
T ss_dssp SSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCB-
T ss_pred CCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcc-
Confidence 788999996532111 011112456689999999999 5999999999877642 23455555433221110000
Q ss_pred eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC
Q psy7039 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408 (516)
Q Consensus 329 ~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~ 408 (516)
..| ........+..|+.+.|.|.+.|.|.+.+.|++++..+..... ... .
T Consensus 223 -----------~~~----------------~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~--~ 272 (404)
T 3p3y_A 223 -----------MYP----------------QGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFE--N 272 (404)
T ss_dssp -----------SSS----------------CSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEE--G
T ss_pred -----------ccc----------------cCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-ccc--c
Confidence 000 0122456788999999999999999999999999988754433 222 2
Q ss_pred CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 409 ~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
....|.|.++.. .|.|.|+|.|.|..|..+..+.|.|..+|.....+.......++.+.|.+.
T Consensus 273 ~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~ 335 (404)
T 3p3y_A 273 FNKALRITNVSE-EDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335 (404)
T ss_dssp GGTEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECE
T ss_pred cCceEEEccCCH-hHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEE
Confidence 234799999999 999999999999999988889998887653210111122234556666664
No 39
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.92 E-value=5e-24 Score=217.44 Aligned_cols=292 Identities=11% Similarity=0.036 Sum_probs=189.4
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..|.|.+++. |.+ |+|.|.+..+... . ...+.+. .+|.+....+....+.+|+.+.|.|.+.
T Consensus 50 ~~l~i~~v~~-d~g-Y~C~a~~~~~~~~-~--~~~l~V~---~~P~~~~~~~~~~~v~~G~~v~L~C~~~---------- 111 (450)
T 1z7z_I 50 KVYELSNVQE-DSQ-PMCYSNCPDGQST-A--KTFLTVY---WTPERVELAPLPSWQPVGKNLTLRCQVE---------- 111 (450)
T ss_dssp EEEEEEEECS-CBC-CEEEEEETTEEEE-E--ECEEEEE---BCCSEEEECCCCSEECTTSEEEEEEEEE----------
T ss_pred eEEEEEeccc-CCe-eEEEEeCCCCcce-e--EEEEEEE---eCCCcceecCCCceEeeCCeEEEEEEec----------
Confidence 4788999988 888 9999975433221 1 1222222 2454443455667899999999999999
Q ss_pred ccccccccCccceeecCcCce---eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--
Q psy7039 150 RALGVRANSTKGWVKLSEPFL---NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA-- 224 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~---~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~-- 224 (516)
+.|.+ .+.|++++..+...... .......|.|.++..+|+|.|+|.+.|..|....
T Consensus 112 ----------------g~~~~~~~~v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 172 (450)
T 1z7z_I 112 ----------------GGAPRANLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172 (450)
T ss_dssp ----------------CCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred ----------------CCCCCcCcEEEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceE
Confidence 87777 89999999888643211 1334569999999999999999999998664221
Q ss_pred --------EEEeec---eeeee---ccccCCceEEEEEEEEccCCC-C--Cceecccccccc-eEEEEEecceeeEE-Ec
Q psy7039 225 --------SAHVTG---TEFTD---NNVHEGKAYEYRVSAVNAAGT-E--KPKISLDALIGK-RIKEFVTSTTASLN-IK 285 (516)
Q Consensus 225 --------~~~~~~---~~~~~---~~l~~g~~~~~~~~~~~~~g~-p--~p~i~W~~~~~~-~~~~~~~~~~~~l~-i~ 285 (516)
.+.+.. ..... ..+.+|+.+.+.|.+ .|. | .+.+.|.+.... ...+........+. ..
T Consensus 173 ~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~---~g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 249 (450)
T 1z7z_I 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL---DGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV 249 (450)
T ss_dssp EEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEE---ESCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEE
T ss_pred EeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEe---eCCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEE
Confidence 111110 01112 567789999999998 666 6 788999652211 01222333322222 22
Q ss_pred cCCCCCce--EEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 286 NSVRKDSG--IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 286 ~l~~~d~g--~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
++..+|+| .|+|.|.|..|.......|.|...+.+. + ...
T Consensus 250 ~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~---i-----------------------------------~~~ 291 (450)
T 1z7z_I 250 SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPN---V-----------------------------------ILT 291 (450)
T ss_dssp ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCE---E-----------------------------------EES
T ss_pred EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCe---E-----------------------------------ecC
Confidence 77899999 9999999999988888888887755421 0 012
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-c---ee
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-S---DS 439 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-~---~s 439 (516)
...+.+|+.+.|.|.+. |.+.+.| +|..+.. .+....|.|..+.. +|.|.|+|.|.|..| . ..
T Consensus 292 ~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~g~~~~~~ 358 (450)
T 1z7z_I 292 KPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPE-DNGRSFSCSATLEVAGQLIHKN 358 (450)
T ss_dssp CSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGG-GTTCEEEEEEEEEETTEEEEEE
T ss_pred CeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcc-cCCceEEEEEEcCCCCcccccc
Confidence 23788999999999998 8889999 6655521 12223699999999 999999999997665 3 34
Q ss_pred EEEEEEEecCCCC
Q psy7039 440 ASCKVYVVDKPSP 452 (516)
Q Consensus 440 ~s~~l~v~~~p~~ 452 (516)
.++.|.|..+|..
T Consensus 359 ~~~~l~V~~~P~~ 371 (450)
T 1z7z_I 359 QTRELRVLYGPRL 371 (450)
T ss_dssp EEEECEEEEEEEC
T ss_pred eeEEEEEecCCce
Confidence 6678888766543
No 40
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.92 E-value=1.2e-21 Score=209.67 Aligned_cols=419 Identities=15% Similarity=0.159 Sum_probs=234.8
Q ss_pred CCCCCCC-cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC-C--------CCeEEeEEeecCCcEEEeCCCcCC
Q psy7039 11 FDEPGKP-TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-T--------GNWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 11 ~~~p~~p-~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~--------~~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
.++|.+| .+|.+..+++++|.|+|.+|..+++.++. |.|+|+.. + ..|..+.. ...+.++|.+|.++
T Consensus 157 ~~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~~~~~w~~v~~--~~~~~~~i~~L~P~ 233 (680)
T 1zlg_A 157 KGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSEDDATHWQTVAQ--TTDERVQLTDIRPS 233 (680)
T ss_pred ecccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCccccCceEEEEe--cCCCeEEeCCCCCC
Confidence 4679999 89999999999999999998655667788 99999875 2 36766544 35778999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecC--C---eEEEEEeeeeccccccCcccccccc
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAG--Q---SFSFDVKEFRELSYTKSPLRALGVR 155 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g--~---~~~l~C~~~~~~~~~~~~~~~~~~~ 155 (516)
+.|.|+|.|.|..|...++.....+.......+| ..+..+.+... . ...+...|. +|..+.+.-
T Consensus 234 t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp----~~P~~l~~~~~~~~~~g~~sv~l~W~-------pP~~~~g~i 302 (680)
T 1zlg_A 234 RWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP----PAPANLRLANSTVNSDGSVTVTIVWD-------LPEEPDIPV 302 (680)
T ss_pred CEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCC----CCCCceEeeeeeecCCCceEEEEEec-------CCCCCCCce
Confidence 9999999999998844333334333332211223 33444444322 1 124555554 122111222
Q ss_pred ccCccceeecCcCceeeEEeeC--Cee-eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE-----EE
Q psy7039 156 ANSTKGWVKLSEPFLNHGWSIN--GQV-CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS-----AH 227 (516)
Q Consensus 156 ~~~~~~~~~~~~p~~~i~W~~~--~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~-----~~ 227 (516)
.++ .|.|... +.. ............+....+.|.++.....+.++..+.|..|....+ +.
T Consensus 303 ~~Y------------~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~ 370 (680)
T 1zlg_A 303 HHY------------KVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLH 370 (680)
T ss_pred eEE------------EEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEE
Confidence 222 2333311 000 000000111123344678999999999999999999887754321 11
Q ss_pred eeceee--eecccc----CCceEEE-----------EEEEE-ccCCCCCceecccccccc---eEEE-------------
Q psy7039 228 VTGTEF--TDNNVH----EGKAYEY-----------RVSAV-NAAGTEKPKISLDALIGK---RIKE------------- 273 (516)
Q Consensus 228 ~~~~~~--~~~~l~----~g~~~~~-----------~~~~~-~~~g~p~p~i~W~~~~~~---~~~~------------- 273 (516)
+..... ....+. ....+.+ ..... ...+.....+.|...... .+.+
T Consensus 371 ~~T~~~~P~p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~ 450 (680)
T 1zlg_A 371 FTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTT 450 (680)
T ss_pred EECCCCCCCccccccccccCccccccccccCCCccccccCCcccCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCC
Confidence 110000 000000 0000000 00000 000111122333221110 0111
Q ss_pred -----EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeE------E-----------EEEec--CC------CCCCC
Q psy7039 274 -----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI------E-----------VVVVS--KP------GPPTG 323 (516)
Q Consensus 274 -----~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~------~-----------l~v~~--~p------~~p~~ 323 (516)
........+.|.+|.+...|.+++.|.|..|...... . +.... .| .+|..
T Consensus 451 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~ 530 (680)
T 1zlg_A 451 GSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPEN 530 (680)
T ss_pred cceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccccccCCccc
Confidence 1133456788999999999999999999988432111 0 00000 01 11111
Q ss_pred ---CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec--CC
Q psy7039 324 ---PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SP 398 (516)
Q Consensus 324 ---p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l--~~ 398 (516)
.+.+..++.+ +.|+|++|..+.+..|.+|. |.|......- ..
T Consensus 531 l~~~v~v~~~~~t-i~lsW~pP~~~~ng~I~gY~--------------------------------V~y~~~~~~~~~~~ 577 (680)
T 1zlg_A 531 LSASFIVQDVNIT-GHFSWKMAKANLYQPMTGFQ--------------------------------VTWAEVTTESRQNS 577 (680)
T ss_pred cceeEEEeccCce-EEEEecCCCCCCCCCceeEE--------------------------------EEEEEccCCCcccc
Confidence 0344445555 99999999865455888883 1121110000 00
Q ss_pred CCceEE----EEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC---CCCCCCCcccccccCCeEEEEe
Q psy7039 399 DGRIKF----ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK---PSPPQGPLDVSDITPESCSLSW 471 (516)
Q Consensus 399 ~~~~~~----~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~---p~~P~~~l~~~~~~~~~~~l~W 471 (516)
.....+ ........++|.+|.+ ...|.|++.|.|..|.+.. ..+.+.+. |.+| ..+.+...+ .|+|
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~l~~L~p-~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~~P-~~l~v~~~~----~l~W 650 (680)
T 1zlg_A 578 LPNSIISQSQILPSDHYVLTVPNLRP-STLYRLEVQVLTPGGEGPA-TIKTFRTPELPPSSA-HRSHLKHRH----PHHY 650 (680)
T ss_pred ccceeeecccccCCcccEEEecCCCC-CceEEEEEEEEcCCCcCCC-cceEEECCCCCCCCC-CCCeEEecc----ceeE
Confidence 000000 0112346799999999 9999999999999998665 44555544 3444 445665433 8999
Q ss_pred eCCCCCCCCCcceEEEEEEecCCC
Q psy7039 472 KPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 472 ~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
++|..++|.+|.+|+|+|+-...+
T Consensus 651 ~pP~~~~G~~I~~~~~~~~~~~~~ 674 (680)
T 1zlg_A 651 KPSPERYGKPIPNPLLGLDSTRTG 674 (680)
T ss_pred CCCCCCCCCccceeeEEEeecccc
Confidence 999999999999999999877554
No 41
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.92 E-value=1.9e-23 Score=196.75 Aligned_cols=246 Identities=16% Similarity=0.141 Sum_probs=181.6
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.|. ..+..+.+.+|+.+.|.|.+. +.|.+ .+.|++++..+...
T Consensus 2 P~i~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~W~~~g~~~~~~-------- 46 (262)
T 3rjd_A 2 AVIT-LQPPWVSVFQEETVTLHCEVL--------------------------HLPGSSSTQWFLNGTATQTS-------- 46 (262)
T ss_dssp CEEE-ESSCCSEEETTCCEEEEEECS--------------------------SCCCTTCEEEEETTEECSCC--------
T ss_pred CeEe-cCCCcEEeeCCCeEEEEEECC--------------------------CCCCCceEEEEECCEEeecc--------
Confidence 4444 445567889999999999999 88777 99999999887532
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee----eeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...|.|.+++.+|+|.|+|.+.+..+.....+.+....+ ....+.+|+.+.+.|.+. .+.|.+.+.|.+..
T Consensus 47 --~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~~p~~~v~W~~~g- 121 (262)
T 3rjd_A 47 --TPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAW--KDKLVYNVLYYRNG- 121 (262)
T ss_dssp --SSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEG--GGCCCEEEEEEETT-
T ss_pred --CCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEcc--CCCCCceEEEEECC-
Confidence 457999999999999999999987776655554432211 234466899999999873 56788899997622
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
... ........|.|.++..+|.|.|+|.|.|..+..+..+.|.|...+.+|.. .
T Consensus 122 ~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~--~---------------------- 175 (262)
T 3rjd_A 122 KAF--KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL--N---------------------- 175 (262)
T ss_dssp EEE--EEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEE--E----------------------
T ss_pred ccc--cccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeE--e----------------------
Confidence 222 22234578999999999999999999999887777788888765433210 0
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecC-Cc----eEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PT----PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~----i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
......+..|+.+.|.|.+.+.|. +. +.|++++..+.. ......|.|.++.. .|
T Consensus 176 ------------~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~--------~~~~~~L~i~~v~~-~d 234 (262)
T 3rjd_A 176 ------------ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG--------RNTSSEYQILTARR-ED 234 (262)
T ss_dssp ------------ESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEE--------EESCCEEEESSCCG-GG
T ss_pred ------------ecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecc--------cCCCceEEEEEech-hh
Confidence 011335788999999999999876 43 678888876531 12335799999999 99
Q ss_pred ceEEEEEEEcCCCce---eEEEEEEE
Q psy7039 424 SGSYTIQLVNTVGSD---SASCKVYV 446 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~---s~s~~l~v 446 (516)
.|.|+|.|.|..|.. +....|.|
T Consensus 235 ~G~Y~C~a~n~~G~~~~~s~~~~l~V 260 (262)
T 3rjd_A 235 SGLYWCEAATEDGNVLKRSPELELQV 260 (262)
T ss_dssp CEEEEEEEEETTSSCEEECCCEEECE
T ss_pred CeEEEEEEEcccCceEEecCCeEEEE
Confidence 999999999999974 33344444
No 42
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.91 E-value=5.1e-23 Score=198.48 Aligned_cols=225 Identities=26% Similarity=0.390 Sum_probs=184.8
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc------cceEEEE-EecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI------GKRIKEF-VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~------~~~~~~~-~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
...+.+|+.+.|.|.+ .|.|.+.+.|.+.. +..+.+. .......|.|.+++.+|+|.|+|.|.|..|...
T Consensus 13 ~~~v~~G~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 89 (305)
T 2nzi_A 13 NLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVS 89 (305)
T ss_dssp CEEECTTCCEEEEEEE---ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred ceEEeCCCcEEEEEEE---eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCcc
Confidence 3456789999999998 78899999996521 2223322 234456999999999999999999999998887
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCce
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i 387 (516)
..+.|.|...|.....+. ........+..|+.+.|.|.+.|.|.+.+
T Consensus 90 ~~~~l~V~~~p~~~~~~~---------------------------------~~~~~~~~~~~g~~~~l~C~~~g~p~p~i 136 (305)
T 2nzi_A 90 GTASLEVEVPAKIHLPKT---------------------------------LEGMGAVHALRGEVVSIKIPFSGKPDPVI 136 (305)
T ss_dssp EEEEEEECEEEEECCCHH---------------------------------HHSSCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred ceEEEEEecCCccCCCcc---------------------------------ccccccEEecCCCEEEEEEEECCCCCCEE
Confidence 788888876543221100 01124467889999999999999999999
Q ss_pred EEEECCeecCCCCceEEEEcCCeEEEEEcC-ceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCe
Q psy7039 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKS-AKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466 (516)
Q Consensus 388 ~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~ 466 (516)
.|++++..+....++.+........|.|.+ +.. .|.|.|+|.|.|..|....+..|.|...|.+| ..+.+..+..++
T Consensus 137 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p-~~~~~~~~~~~~ 214 (305)
T 2nzi_A 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQKTVELDVADVPDPP-RGVKVSDVSRDS 214 (305)
T ss_dssp EEEESSSBCCSSSSCEEEECSSEEEEEETTCCCS-TTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC-EEEEEESCCSSC
T ss_pred EEEECCEECCCCCcEEEEEcCCceEEEEecCCcc-CccEEEEEEEEeCCCceeeEEEEEEecCCCCC-CCceeeeccCCE
Confidence 999999988877888887777788999999 999 99999999999999999999999999999988 778888889999
Q ss_pred EEEEeeCCCCCCCCCcceEEEEEEecCCCce
Q psy7039 467 CSLSWKPPLDDGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 467 ~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
+.|+|++|..+++.++..|.|+++......|
T Consensus 215 v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w 245 (305)
T 2nzi_A 215 VNLTWTEPASDGGSKITNYIVEKCATTAERW 245 (305)
T ss_dssp EEEEEECCSCCSBSCEEEEEEEEEETTSCCE
T ss_pred EEEEEcCCccCCCCceeEEEEEEecCCCCcc
Confidence 9999999877888899999999998876553
No 43
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.91 E-value=2e-23 Score=209.65 Aligned_cols=265 Identities=19% Similarity=0.234 Sum_probs=191.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccC--CceEEeecCCe
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIG--GRADVQTTKSE 195 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~ 195 (516)
..+..+.+.+|+.+.|.|.+. + .|.+.+.|++++..+... .+.... ..
T Consensus 26 ~~P~~~~v~~G~~v~L~C~~~--------------------------~~~p~~~v~W~k~g~~~~~~~~~~~~~~---~~ 76 (403)
T 3laf_A 26 SEPSDAVTMRGGNVLLNCSAE--------------------------SDRGVPVIKWKKDGLILALGMDDRKQQL---PN 76 (403)
T ss_dssp ECCCCEEECTTCCEEECCEEE--------------------------CTTCCCEEEEEETTEECCTTSCTTEEEC---TT
T ss_pred eCCCceEEecCCcEEEEEEcC--------------------------CCCCCceEEEEECCEECccCCcccEEEe---cC
Confidence 567778999999999999998 5 678899999999988643 333332 22
Q ss_pred eEEEeccC-----CCCCCeeEEEEEEcCCCceEE----EEEeec-eee----eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 196 TVLDIPFC-----SRSDTGHYSLTLENNLGTATA----SAHVTG-TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 196 ~~l~i~~~-----~~~d~g~Y~c~~~~~~g~~~~----~~~~~~-~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
..|.|.++ +.+|+|.|+|.+.+..+.... .+.+.. ..+ ....+.+|+.+.+.|.+ .|.|.+.+
T Consensus 77 ~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~---~~~p~~~v 153 (403)
T 3laf_A 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEV---IGDPMPTI 153 (403)
T ss_dssp SCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCE---ECSSCCEE
T ss_pred CcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEE---cccCCCeE
Confidence 35777777 678999999999965443321 111111 111 22356689999999988 68899999
Q ss_pred cccccccc-----eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCee
Q psy7039 262 SLDALIGK-----RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESV 335 (516)
Q Consensus 262 ~W~~~~~~-----~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~ 335 (516)
.|.+.... ............|.|.++..+|+|.|+|.|.|..|.. .....+.|...|..+..+ .+.
T Consensus 154 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~-~~~------- 225 (403)
T 3laf_A 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL-YFL------- 225 (403)
T ss_dssp EEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEE-EEE-------
T ss_pred EEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCc-eEe-------
Confidence 99652211 1111123445689999999999999999999987764 346777777665543210 000
Q ss_pred EEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEE
Q psy7039 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRN 415 (516)
Q Consensus 336 ~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i 415 (516)
..+....+..|+.+.|.|.+.+.|.+.+.|++++..+............ ..|.|
T Consensus 226 ------------------------~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~L~i 279 (403)
T 3laf_A 226 ------------------------QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SNLLI 279 (403)
T ss_dssp ------------------------ECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT--TEEEE
T ss_pred ------------------------cCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc--cEEEE
Confidence 1234567889999999999999999999999999887644332222222 36999
Q ss_pred cCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.++.. .|.|.|+|.|.|..|..+.+..|.|..+|
T Consensus 280 ~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 313 (403)
T 3laf_A 280 SNVTD-DDSGTYTCVVTYKNENISASAELTVLVPP 313 (403)
T ss_dssp CSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEEEE
T ss_pred eCCCH-HHCEEEEEEEEcCCCceEEEEEEEEECCC
Confidence 99999 99999999999999998888899887665
No 44
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.91 E-value=2.2e-23 Score=199.34 Aligned_cols=263 Identities=16% Similarity=0.176 Sum_probs=181.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. + .+.|++++... ......
T Consensus 4 ~p~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------~----~v~W~~~~~~~-----~~~~~~ 47 (289)
T 3ejj_X 4 APVIE-PSGPELVVEPGETVTLRCVSN--------------------------G----SVEWDGPISPY-----WTLDPE 47 (289)
T ss_dssp CCEEE-SCSSEEEECTTCCEEEEEECS--------------------------S----CCEEECSCSSS-----SEECCC
T ss_pred CcEec-CCCceEEECCCCCEEEEEEeC--------------------------C----cEEEccCCCce-----EEEecc
Confidence 45555 555678899999999999998 5 48999765321 233334
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----e----eeccccCCceEEEEEEEEccCCCCCce-ecc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----F----TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISL 263 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~----~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W 263 (516)
.....|.|.+++.+|+|.|+|.+.+..+.......+.+.. + ....+.+|+.+.+.|.+ .|.+.+. +.|
T Consensus 48 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~---~~~~~~~~v~W 124 (289)
T 3ejj_X 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI---TDPALKDSVSL 124 (289)
T ss_dssp SSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEE---SCGGGGGSEEE
T ss_pred CCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEc---cCCCcceEEEE
Confidence 5567999999999999999999988777655554433321 1 23456789999999998 5666655 999
Q ss_pred cccccceE----EEEEecceeeEEEccCCCCCceEEEEEEE-ecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 264 DALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAK-NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 264 ~~~~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~-n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
....+... ... ......|.|.++..+|+|.|+|.|. +..+..+..+.|.|...+..+.. +.
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~-i~------------ 190 (289)
T 3ejj_X 125 MREGGRQVLRKTVYF-FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ-IK------------ 190 (289)
T ss_dssp EEGGGEECCTTCCEE-EETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE-EE------------
T ss_pred EecCCeecCCCccEE-ECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe-EE------------
Confidence 54222111 111 1334579999999999999999999 44555666778888754322110 00
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee-ecCCceEEEECCeecCCCCceEEEE--cCCeEEEEE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFET--SENQTIYRN 415 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~~i~W~~~~~~l~~~~~~~~~~--~~~~~~l~i 415 (516)
..+....+..|+.+.|.|.+.+ .|.+.+.|++++..+.......... ......|.|
T Consensus 191 ---------------------~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (289)
T 3ejj_X 191 ---------------------LEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249 (289)
T ss_dssp ---------------------EESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEE
T ss_pred ---------------------ecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEE
Confidence 1123345578999999999998 7888999999998775432221110 012358999
Q ss_pred cCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 416 ~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
.++.. .|.|.|+|.|.|..|....++.|.+...+
T Consensus 250 ~~v~~-~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 250 NAVDF-QDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp SSCCS-SSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred Eeecc-cCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 99999 99999999999999999999988876543
No 45
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.91 E-value=5.1e-24 Score=212.80 Aligned_cols=281 Identities=16% Similarity=0.176 Sum_probs=181.3
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC-CC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC-SR 205 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~ 205 (516)
.+|+.+.|.|.+. |.|.+.|+|++++..+......++...+ ..|.|.+. +.
T Consensus 21 ~eg~~v~L~C~~~--------------------------g~P~p~i~W~k~g~~l~~~~~~~~~~~~--g~l~i~~~~~~ 72 (384)
T 3kld_A 21 SEEKKVKLSCEVK--------------------------GNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKT 72 (384)
T ss_dssp CSCSEEEECCEEE--------------------------EESCCEEEEEETTEECCC----CEEEET--TEEEEESCCHH
T ss_pred CCCCeEEEEeEec--------------------------CCCCCEEEEEECCEECcCCCCccEEEEC--CEEEEcCCCCc
Confidence 5789999999999 9999999999999998754433333222 36777776 78
Q ss_pred CCCeeEEEEEEcCCCceEE---EEEeece-ee-----eeccccCCceEEEEEEEEccCCCCCceeccccccc---ceEEE
Q psy7039 206 SDTGHYSLTLENNLGTATA---SAHVTGT-EF-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG---KRIKE 273 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~---~~~~~~~-~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~---~~~~~ 273 (516)
+|+|.|+|.+.|..|.... .+.+... .+ ....+.+|+...+.|.+ ..+.+.+.+.|..... .....
T Consensus 73 ~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~--~~~~~~~~~~W~~~~~~~~~~~~~ 150 (384)
T 3kld_A 73 QDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP--PPHSGELSYAWIFNEYPSYQDNRR 150 (384)
T ss_dssp HHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCC--CSEESCEEEEEEETTEECCCSSSE
T ss_pred ccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCC--CCCCCCeEEEEEECCCCCEeeccE
Confidence 9999999999999886432 1211111 01 12345678888888854 2345678899965211 11112
Q ss_pred EEecceeeEEEccCCCCCceEEEEEEEecCCCcce---eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA---DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~---~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......+.|.|.++..+|+|.|+|.|.|..+.... ...+.+........ ..-.+.-
T Consensus 151 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~----------~~p~~~~----------- 209 (384)
T 3kld_A 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGE----------YEPKIEV----------- 209 (384)
T ss_dssp EECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCC----------EEEEEEE-----------
T ss_pred EEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccc----------cCCceee-----------
Confidence 23345678999999999999999999998765321 11122211000000 0000000
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECC-eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG-DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~-~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c 429 (516)
..+....+..|+.+.|.|.+.|.|.|.+.|++++ ..+.... .. ......|.|.++.. .|+|.|+|
T Consensus 210 ---------~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~-~D~G~Y~C 275 (384)
T 3kld_A 210 ---------QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--RR--HKSNGILEIPNFQQ-EDAGSYEC 275 (384)
T ss_dssp ---------ECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--EE--CTTSCEEEECSCCG-GGCEEEEE
T ss_pred ---------cCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--ee--cCCCcEEEECCCCh-hhCEEEEE
Confidence 1224567889999999999999999999999954 3443221 11 22334799999999 99999999
Q ss_pred EEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 430 QLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.|.|..|.......|.|..+|......-......++.+.|.+.
T Consensus 276 ~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~ 318 (384)
T 3kld_A 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318 (384)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECE
T ss_pred EEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeE
Confidence 9999999988888888876653211111122234555666554
No 46
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.91 E-value=3e-23 Score=201.11 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=175.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-----eeEEeeCCee-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-----NHGWSINGQV------------- 180 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~i~W~~~~~~------------- 180 (516)
..|..+.+..|+++.|.|.+. +.+.+ .+.|++++..
T Consensus 5 ~~P~~v~~~~G~~v~L~C~v~--------------------------~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~ 58 (313)
T 4fqp_A 5 QAPTQVPGFLGDSVTLPCYLQ--------------------------VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPS 58 (313)
T ss_dssp ECCSEECCBTTSCEEECCEEE--------------------------CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEE
T ss_pred cCCCEEEEecCCCEEEEEEEE--------------------------CCCCCccceEEEEEEECCCCcceEEEecCCCce
Confidence 345567788999999999998 54433 4788886642
Q ss_pred eccCCceEEeec-----CCeeEEEeccCCCCCCeeEEEEEEcC-CCceEEEEEeecee-------eeeccccCCceEEEE
Q psy7039 181 CQIGGRADVQTT-----KSETVLDIPFCSRSDTGHYSLTLENN-LGTATASAHVTGTE-------FTDNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~g~Y~c~~~~~-~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~ 247 (516)
+....++.+... ..+.+|.|.+++.+|+|.|+|.+.+. .+.......+.... .....+..+....+.
T Consensus 59 ~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~ 138 (313)
T 4fqp_A 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138 (313)
T ss_dssp ESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEE
T ss_pred eccCcceEEEeeccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEE
Confidence 222334443221 23467999999999999999988644 44444444333211 123345567788888
Q ss_pred EEEEccCCCCCceecccccccceEE---EEEec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeE--EEEEecC
Q psy7039 248 VSAVNAAGTEKPKISLDALIGKRIK---EFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI--EVVVVSK 317 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~~~~---~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~--~l~v~~~ 317 (516)
|.+. .|.|.|.+.|.+....... ..... ....|.|......|.|.|+|.|.|..+...... .|.|..+
T Consensus 139 C~~~--~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~ 216 (313)
T 4fqp_A 139 CVST--GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216 (313)
T ss_dssp EEEE--EEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE
T ss_pred EEcc--CccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC
Confidence 8763 5778999999763221111 11111 123588899999999999999999877655443 3444333
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeec
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEV 396 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l 396 (516)
|... + .......+..|+.+.|.|.+.|+|.| .|.|++++..+
T Consensus 217 P~v~---------------~----------------------~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l 259 (313)
T 4fqp_A 217 PEVS---------------I----------------------SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL 259 (313)
T ss_dssp EEEE---------------E----------------------ECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSC
T ss_pred Cccc---------------c----------------------ccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEEC
Confidence 3210 0 01122345678899999999999999 69999999877
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.... . ..+ ..|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 260 ~~~~--~--~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 260 PPFA--V--AQG--AQLLIRPVDK-PINTTLICNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp CTTE--E--EET--TEEEECCCSS-CCEEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred CCce--E--EeC--CEEEECcCCh-hhCEEEEEEEEeCCCcEEEEEEEEEEeC
Confidence 5432 1 112 3699999999 9999999999999999999999999864
No 47
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.91 E-value=2.7e-23 Score=202.99 Aligned_cols=253 Identities=15% Similarity=0.089 Sum_probs=183.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC---------cCceeeEEeeCCeeeccCCceEEe
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS---------EPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
....+.+.+|+++.|.|.+. + .|.+.+.|++++..+....+. .
T Consensus 35 ~~~~v~v~eG~~v~L~C~~~--------------------------~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~- 86 (329)
T 3oq3_B 35 GTMNDMAALGEPFSAKCPPI--------------------------EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-V- 86 (329)
T ss_dssp EEEEEEECTTSCEEECCHHH--------------------------HCTTTGGGSCCTTCEEEEEECSSSCEECSTT-E-
T ss_pred CcceEEEECCCeEEEEccCC--------------------------CCccccccccCCCCeeEEEECCCCccccCce-e-
Confidence 33567899999999999998 4 366899999998776544333 1
Q ss_pred ecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEEEEEeec-----ee---eeeccccCCceEEEEEEEEccCCCC-Cce
Q psy7039 191 TTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATASAHVTG-----TE---FTDNNVHEGKAYEYRVSAVNAAGTE-KPK 260 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~~~~~~~-----~~---~~~~~l~~g~~~~~~~~~~~~~g~p-~p~ 260 (516)
...+|.|.+++.+|+| .|+|.+.|..|.......... .. .....+.+|..+.+.|.+ .|.| .|.
T Consensus 87 ---~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~---~g~p~~~~ 160 (329)
T 3oq3_B 87 ---KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI---LYAKHYNN 160 (329)
T ss_dssp ---ETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCC---CSCCCCCE
T ss_pred ---ecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEecc---CCCCCCce
Confidence 2458999999999999 899999998876443331111 11 122345679999999977 8888 899
Q ss_pred ecccccc------cceEEEEEecceeeEEEccCCCCCceEEEEEEEec--CCCccee----EEEEEecCCCCCCCCceee
Q psy7039 261 ISLDALI------GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND--YGIDMAD----IEVVVVSKPGPPTGPIDYT 328 (516)
Q Consensus 261 i~W~~~~------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~----~~l~v~~~p~~p~~p~~~~ 328 (516)
+.|.+.. ...+.. ....|.|.++..+|+|.|+|.|.|. .|..... +.|.|...|..... +
T Consensus 161 i~W~k~~~~l~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~-~--- 232 (329)
T 3oq3_B 161 ITWYKNNQELIIDGTKYSQ----SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK-L--- 232 (329)
T ss_dssp EEEEETTEECCCSSSSEEE----ETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEE-E---
T ss_pred EEEEECCccCCCCCceEec----CCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCc-e---
Confidence 9997521 112211 1478999999999999999999997 6655443 56777655532100 0
Q ss_pred eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec---CC-ceEEEECCeec-CCCCceE
Q psy7039 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP---KP-TPIWTVNGDEV-SPDGRIK 403 (516)
Q Consensus 329 ~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p---~~-~i~W~~~~~~l-~~~~~~~ 403 (516)
..+....+..|+.+.|.|.+.|.| .+ .+.|++++..+ ..+....
T Consensus 233 -------------------------------~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~ 281 (329)
T 3oq3_B 233 -------------------------------ILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281 (329)
T ss_dssp -------------------------------ECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEE
T ss_pred -------------------------------ecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCcee
Confidence 012346788999999999999998 67 88999999874 3333322
Q ss_pred EE--EcC--CeEEEEEcCceecCCce-EEEEEEEcCCCceeEEEEEEE
Q psy7039 404 FE--TSE--NQTIYRNKSAKRATDSG-SYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 404 ~~--~~~--~~~~l~i~~~~~~~~~g-~y~c~a~n~~G~~s~s~~l~v 446 (516)
.. ... ....|.|.++.. .|.| .|+|.|.|..|....++.|.|
T Consensus 282 ~~~~~~~~~~~~~L~I~~v~~-~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 282 SILTSSGGITEATLYFENVTE-EYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEEETTEEEEEEEESSCCG-GGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred eeecccCceeEeEEEEEeccH-HHCCCcEEEEEEecCCceEEEEEEEe
Confidence 21 111 346899999999 9999 999999999999888887776
No 48
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.4e-23 Score=198.21 Aligned_cols=256 Identities=13% Similarity=0.067 Sum_probs=168.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC-CeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK-SETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-~~~~l 198 (516)
....+.+.+|+++.|.|.+. +. +.|++++..+. .+......+ ....|
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~--------------------------~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L 53 (289)
T 3mjg_X 6 PGPELVLNVSSTFVLTCSGS--------------------------AP----VVWERMSQEPP--QEMAKAQDGTFSSVL 53 (289)
T ss_dssp SCSEEECCTTCCEEEEEEES--------------------------SC----CEEEBTTBCCS--EEEEECTTSCEEEEE
T ss_pred CCCeEEEeCCCcEEEEEecc--------------------------ce----EEEECCCCCcc--cceeccCCCceeEEE
Confidence 34457889999999999998 54 99999988763 222222222 24799
Q ss_pred EeccCCCCCCeeEEEEEEcCCCc---eEEEEEeece----eee----e---ccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGT---ATASAHVTGT----EFT----D---NNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~---~~~~~~~~~~----~~~----~---~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
.|.+++.+|+|.|+|.+.|..|. ....+.+.+. .+. . ..+.+|+.+.+.|.+ . .|.|.++|.
T Consensus 54 ~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~---~-~p~~~v~w~ 129 (289)
T 3mjg_X 54 TLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV---T-DPQLVVTLH 129 (289)
T ss_dssp EECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCB---S-CTTSCEEEE
T ss_pred EEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEc---C-CCCceEEEE
Confidence 99999999999999999998765 2233333221 111 1 347789999999988 3 456677775
Q ss_pred ccc-cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCC
Q psy7039 265 ALI-GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342 (516)
Q Consensus 265 ~~~-~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p 342 (516)
+.. +...........+.+ ...|+|.|+|.|.|..+.. +....+.|... .+|. +.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~--i~---------------- 185 (289)
T 3mjg_X 130 EKKGDVALPVPYDHQRGFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSIN--VS---------------- 185 (289)
T ss_dssp ESSCCSCCCCCEETTTEEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCC--CE----------------
T ss_pred eCCCCCccceeecCCcCee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCC--cE----------------
Confidence 432 222111111222211 3579999999999876554 33455665543 1111 11
Q ss_pred CCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE-----cCCeEEEEEcC
Q psy7039 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-----SENQTIYRNKS 417 (516)
Q Consensus 343 ~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-----~~~~~~l~i~~ 417 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++............. ......|.|.+
T Consensus 186 -----------------~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~ 248 (289)
T 3mjg_X 186 -----------------VNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPS 248 (289)
T ss_dssp -----------------EEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESS
T ss_pred -----------------EeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcc
Confidence 11233568899999999999999999999998776543222211111 12346899999
Q ss_pred ceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+.. .|.|.|+|.|.|..|....++.|+|...+...
T Consensus 249 v~~-~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 249 AEL-EDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp CCS-SCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred cCh-hhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 999 99999999999999999999999998877654
No 49
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=202.94 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=175.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec---------------c--CC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ---------------I--GG 185 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~---------------~--~~ 185 (516)
.+.+.+|+++.|.|.+.+ +.+.+.++|++++.... . ..
T Consensus 8 ~vtv~~G~~v~L~C~v~~-------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEV-------------------------NETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQG 62 (308)
T ss_dssp SCEEETTSCEEECCBCCC-------------------------SSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTT
T ss_pred EeEEEcCCcEEEEEEecC-------------------------CCCCcEEEEEECCCCCCceEEEecCCCCceecCcccc
Confidence 477889999999999871 34556799988543211 0 12
Q ss_pred ceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee-----e----eeccccCCceEEEEEEEEccC
Q psy7039 186 RADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE-----F----TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 186 ~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~-----~----~~~~l~~g~~~~~~~~~~~~~ 254 (516)
|+.+.. .....+|.|.+++.+|+|.|+|.+.+.. |.......+.... . .......|..+.+.|.+. .
T Consensus 63 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~--~ 140 (308)
T 4fom_A 63 RVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAA--T 140 (308)
T ss_dssp TEEESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEE--E
T ss_pred eEEeeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEec--C
Confidence 222221 2234689999999999999999998864 3333333222111 1 112234578889998763 6
Q ss_pred CCCCceecccccccceE--EEEE----ecceeeEEEccCCCCCceEEEEEEEecCCCccee--EEEEEecCCCCCCCCce
Q psy7039 255 GTEKPKISLDALIGKRI--KEFV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD--IEVVVVSKPGPPTGPID 326 (516)
Q Consensus 255 g~p~p~i~W~~~~~~~~--~~~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~--~~l~v~~~p~~p~~p~~ 326 (516)
|.|.|.+.|.+...... .... ......|.|..+...|.|.|+|.|.|..|..... +.|.|..+|.....
T Consensus 141 g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~--- 217 (308)
T 4fom_A 141 GKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVT--- 217 (308)
T ss_dssp EBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCB---
T ss_pred CcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEc---
Confidence 78999999976322111 1111 1123468999999999999999999988776544 34444444322111
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFE 405 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~ 405 (516)
......+..|+.+.|.|.+.|.|.| .+.|++++..+....
T Consensus 218 ----------------------------------~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~----- 258 (308)
T 4fom_A 218 ----------------------------------GYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL----- 258 (308)
T ss_dssp ----------------------------------CCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC-----
T ss_pred ----------------------------------ccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE-----
Confidence 1223355678899999999999998 699999987764432
Q ss_pred EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 406 ~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
...+...|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus 259 ~~~~~~~l~i~~v~~-~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 259 LASDNTLHFVHPLTF-NYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp BCSTTEEECCSCCCS-CCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEcCCeEEEECCCCh-hhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 122345678899999 999999999999999999999999987654
No 50
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.91 E-value=1.3e-24 Score=210.73 Aligned_cols=263 Identities=16% Similarity=0.107 Sum_probs=183.1
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeec----cCCceEEeecCCee
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQ----IGGRADVQTTKSET 196 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~----~~~~~~~~~~~~~~ 196 (516)
..+.+.+|+.+.|.|.+. +.+ .+.+.|++++..+. ...++... ..
T Consensus 13 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~----~~ 62 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLN--------------------------PNEHKGTITWYKDDSKTPVSTEQASRIHQH----KE 62 (315)
T ss_dssp CCCEEETTSCCCCBCCCC--------------------------SCCCSSCCCEECTTSCSCSCCCTTSSSEEC----SS
T ss_pred eEEEEcCCCcEEEEeecc--------------------------CcCCCceEEEEeCCCcCccccccCCcEecc----CC
Confidence 357889999999999999 776 78999999886432 22333332 23
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-----------eeccccCCceEEEEEEEE---ccCCCCCceec
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-----------TDNNVHEGKAYEYRVSAV---NAAGTEKPKIS 262 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-----------~~~~l~~g~~~~~~~~~~---~~~g~p~p~i~ 262 (516)
.|.|.+++.+|+|.|+|.+.|..|.......+..... ....+..|....+.|.+. ...|.|.|.+.
T Consensus 63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~ 142 (315)
T 1itb_B 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142 (315)
T ss_dssp BEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCE
T ss_pred eEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEE
Confidence 8999999999999999999998877655443322111 123466789999998752 12678899999
Q ss_pred ccccccce--EEEEEecceeeEEEccCCCCCceEEEEEEE-ecCCCc---ceeEEEEEecCCCCCCCCceeeeccCCeeE
Q psy7039 263 LDALIGKR--IKEFVTSTTASLNIKNSVRKDSGIYKIEAK-NDYGID---MADIEVVVVSKPGPPTGPIDYTTVTPESVS 336 (516)
Q Consensus 263 W~~~~~~~--~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~-n~~g~~---~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~ 336 (516)
|.+..... ...........|.|.++..+|+|.|+|.|. |..|.. ...+.+.+.... .+..|....
T Consensus 143 W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~-~~~~P~~~~-------- 213 (315)
T 1itb_B 143 WYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-KPTRPVIVS-------- 213 (315)
T ss_dssp EEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC-CCCCCEECS--------
T ss_pred EEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC-CCCCCEEec--------
Confidence 96521110 000112335589999999999999999999 777775 233334333221 111111000
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE----Ec-----
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE----TS----- 407 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~----~~----- 407 (516)
.......+..|+.+.|.|.+.|.|.|.+.|+++|..+......... ..
T Consensus 214 -----------------------~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~ 270 (315)
T 1itb_B 214 -----------------------PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270 (315)
T ss_dssp -----------------------CCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCG
T ss_pred -----------------------CCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCC
Confidence 0112256789999999999999999999999999988654432111 11
Q ss_pred ---CCeEEEEEcCceecCC-ceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 408 ---ENQTIYRNKSAKRATD-SGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 408 ---~~~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.....|.|.++.. .| +|.|+|.|.|..|....++.|.|.
T Consensus 271 ~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 271 RRSTLITVLNISEIES-RFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp GGEEEEEEEEESSCCG-GGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ceeEEEEEEEEeecCH-HHcCCceEEEEecCCCceeEEEEEEec
Confidence 1235899999999 99 999999999999999988888774
No 51
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.91 E-value=9.3e-24 Score=206.19 Aligned_cols=263 Identities=11% Similarity=0.103 Sum_probs=180.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc----CceeeEEeeCCe--e------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE----PFLNHGWSINGQ--V------------ 180 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~i~W~~~~~--~------------ 180 (516)
..+..+.+.+|+.+.|.|.+. +. +.+.+.|++++. .
T Consensus 19 ~~~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~ 72 (331)
T 3u83_A 19 QVNDSMYGFIGTDVVLHCSFA--------------------------NPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72 (331)
T ss_dssp --CEEEEEETTCCEEECCBCS--------------------------SCCSSCEEEEEEEEEEETTEEEEEEEEETTTEE
T ss_pred EcCCcEEEEecCCEEEeeecC--------------------------CCCCCCceEEEEEEEcCCCCCceEEEEeccCCC
Confidence 566678999999999999998 54 566789998431 1
Q ss_pred -e--ccCCceEEe-ecCCeeEEEeccCCCCCCeeEEEE-EEcCCCceEEEEEeeceee---------eeccccCC---ce
Q psy7039 181 -C--QIGGRADVQ-TTKSETVLDIPFCSRSDTGHYSLT-LENNLGTATASAHVTGTEF---------TDNNVHEG---KA 243 (516)
Q Consensus 181 -~--~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~-~~~~~g~~~~~~~~~~~~~---------~~~~l~~g---~~ 243 (516)
+ ....|+.+. ......+|.|.+++.+|+|.|+|. +.+..+.......+.+... ....+.+| +.
T Consensus 73 ~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~ 152 (331)
T 3u83_A 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152 (331)
T ss_dssp EECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCE
T ss_pred CcCcccCCceEecccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccce
Confidence 1 112444443 233456899999999999999998 4444555444443332211 11234566 77
Q ss_pred EEEEEEEEccCCCCCceeccccc-ccceEEEEEec------ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDAL-IGKRIKEFVTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~-~~~~~~~~~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+.+.|.+. .|.|.|.+.|.+. .+......... ....|.|..+...|.|.|+|.|.|..|..+..+.|.|..
T Consensus 153 ~~l~C~~~--~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 230 (331)
T 3u83_A 153 LVATCTSA--NGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230 (331)
T ss_dssp EEEEEEEE--EEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE
T ss_pred EEEEEEec--CCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec
Confidence 99999732 6789999999753 11111111111 124678888899999999999999988877777777765
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCc-eEEEECCee
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-PIWTVNGDE 395 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~ 395 (516)
+|..... ......+..|+.+.|.|.+.|.|.+. +.|++++..
T Consensus 231 ~P~~~~~-------------------------------------~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~ 273 (331)
T 3u83_A 231 EPEVTIE-------------------------------------GFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273 (331)
T ss_dssp EEEEEEE-------------------------------------CCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBS
T ss_pred CCeEEEe-------------------------------------cCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCc
Confidence 5432100 11223456899999999999999998 999999987
Q ss_pred cCCCCceEEEEcCCeEEEEEc-CceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 396 VSPDGRIKFETSENQTIYRNK-SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 396 l~~~~~~~~~~~~~~~~l~i~-~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+.... .. .. ..|.|. ++.. .|.|.|+|.|.|..|..+.++.|.|...+...
T Consensus 274 ~~~~~--~~--~~--~~L~i~~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 325 (331)
T 3u83_A 274 LPKGV--EA--QN--RTLFFKGPINY-SLAGTYICEATNPIGTRSGQVEVNITEAAALE 325 (331)
T ss_dssp CCTTE--EE--ET--TEEEECSCCCG-GGCEEEEEEEEETTEEEEEEEEECCBC-----
T ss_pred ccccc--ee--cC--cEEEEeCCCcc-ccCeEEEEEEEeccccceEEEEEEEeccchhh
Confidence 75432 11 11 369999 8999 99999999999999999999999998776544
No 52
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.91 E-value=2e-23 Score=208.12 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=195.9
Q ss_pred CCccccCcccceEE---ecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--Cce
Q psy7039 113 APRIDRSTLNDVKI---KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRA 187 (516)
Q Consensus 113 ~p~~~~~~~~~~~v---~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~ 187 (516)
+|.|. ..+....+ .+|+.+.|.|.+. +.|.+.+.|++++..+... .++
T Consensus 4 ~P~~~-~~p~~~~~~~~~~g~~v~l~C~~~--------------------------g~p~~~v~W~k~g~~~~~~~~~~~ 56 (382)
T 1cs6_A 4 GPVFE-EQPAHTLFPEGSAEEKVTLTCRAR--------------------------ANPPATYRWKMNGTELKMGPDSRY 56 (382)
T ss_dssp EEEEE-ECCCCEEEETTCSCCEEEECCEEE--------------------------EESCCEEEEEETTEECCCSTTSSE
T ss_pred CCEEE-ECCCcEEEecCCCCCcEEEEEEec--------------------------CCCCCEEEEEECCEECCcCCCccE
Confidence 55665 44455555 6899999999999 8999999999999988754 344
Q ss_pred EEeecCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEE---EEEeece-e-----eeeccccCCceEEEEEEEEccCCCC
Q psy7039 188 DVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLGTATA---SAHVTGT-E-----FTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 188 ~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~---~~~~~~~-~-----~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
.+ . ...|.|.++.. +|+|.|+|.+.|..|.... .+.+... . .....+.+|+.+.+.|.+ ..+.|
T Consensus 57 ~~--~--~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~--~~~~p 130 (382)
T 1cs6_A 57 RL--V--AGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP--PPHYP 130 (382)
T ss_dssp EE--E--TTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCC--CSEES
T ss_pred Ee--e--CCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCC--CCCCC
Confidence 33 2 24799999997 9999999999998875422 2222111 1 122346789999999975 24567
Q ss_pred Cceecccccccc-----eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce-----eEEEEEecCCCCCCCCcee
Q psy7039 258 KPKISLDALIGK-----RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-----DIEVVVVSKPGPPTGPIDY 327 (516)
Q Consensus 258 ~p~i~W~~~~~~-----~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~-----~~~l~v~~~p~~p~~p~~~ 327 (516)
.+.+.|.+.... ..........+.|.|.++...|+|.|+|.+.|..|.... ...+.+.........|
T Consensus 131 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P--- 207 (382)
T 1cs6_A 131 ALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP--- 207 (382)
T ss_dssp CCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEE---
T ss_pred CcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCC---
Confidence 889999652211 111223345578999999999999999999998754322 2334433211000000
Q ss_pred eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc
Q psy7039 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 328 ~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
.+.- ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+... ..
T Consensus 208 --------~~~~--------------------~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~------~~ 253 (382)
T 1cs6_A 208 --------SIKA--------------------KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WL 253 (382)
T ss_dssp --------EEEE--------------------CCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CS
T ss_pred --------ceec--------------------cCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE------Ee
Confidence 0000 1224567889999999999999999999999988765321 12
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEee
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 472 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~ 472 (516)
.....|.|.++.. .|.|.|+|.|.|..|.......|.|..+|.............++.+.|.+.
T Consensus 254 ~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~ 317 (382)
T 1cs6_A 254 SSEPLLHIQNVDF-EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317 (382)
T ss_dssp BSSSEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECE
T ss_pred cCCcEEEEccCCh-hhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEE
Confidence 2345799999999 999999999999999988888898876654221111122234556666664
No 53
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.91 E-value=3.7e-22 Score=207.69 Aligned_cols=299 Identities=9% Similarity=0.081 Sum_probs=187.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
..|.|.+++..|.|.|+|.|.|..|...... . .........+|.+. .......+.+|+.+.|.|.+.
T Consensus 178 s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~-~-~~~~~~~~~~P~v~-~~~~~~~~~~G~~~~l~C~~~---------- 244 (523)
T 2rcj_C 178 SYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV-A-PTECSASTKGPSVF-PLAPSSKSTSGGTAALGCLVK---------- 244 (523)
T ss_pred EEEEEechhcCCCceEEEEEEecCcccccce-e-eeecCCCCcCCEEE-ecCCCcccccCCceEEEEEEe----------
Confidence 3689999999999999999999876533211 1 11111223455554 222234567999999999998
Q ss_pred ccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecCC----eeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 150 RALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTKS----ETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+. |.+ .++|++++..+.......+...++ .+.|.|.+++.+| |.|+|.+.|..|...
T Consensus 245 ----------------g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~ 307 (523)
T 2rcj_C 245 ----------------DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 307 (523)
T ss_pred ----------------ceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcc
Confidence 65 766 899999987654211111111111 3589999999999 999999999998865
Q ss_pred EEEEeece---e-e----eecc-ccCCceEEEEEEEEccCCCCC----ceecccccccc-----eEEE-EEe----ccee
Q psy7039 224 ASAHVTGT---E-F----TDNN-VHEGKAYEYRVSAVNAAGTEK----PKISLDALIGK-----RIKE-FVT----STTA 280 (516)
Q Consensus 224 ~~~~~~~~---~-~----~~~~-l~~g~~~~~~~~~~~~~g~p~----p~i~W~~~~~~-----~~~~-~~~----~~~~ 280 (516)
....+... . + .... +.+|+.+.|.|.+ .|.++ +.+.|.+.... .... ... ....
T Consensus 308 ~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~---~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 384 (523)
T 2rcj_C 308 VDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVS 384 (523)
T ss_pred eEEecCCCcCceEEecCCCchhhcccCCceEEEEEE---ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEE
Confidence 55443211 1 1 1122 6789999999999 56443 58999652111 0000 000 1124
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec-CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS-KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~-~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.++..+|+|.|+|.|.|..+.......+.+.. ...+|. +.+.
T Consensus 385 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~--v~~~------------------------------- 431 (523)
T 2rcj_C 385 VLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ--VYTL------------------------------- 431 (523)
T ss_pred EEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCE--EEEe-------------------------------
Confidence 588999999999999999999877765444444311 111110 0000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCe-----EEEEEcCceecCCceEEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQ-----TIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
......+..| .+.|.|.+.|.+++ .+.|+++|..+............+. ..|.|..... .|.|.|+|.|.
T Consensus 432 -~~~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~-~~~g~Y~C~a~ 508 (523)
T 2rcj_C 432 -PPSREEMTKN-QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVM 508 (523)
T ss_pred -CCChHHccCC-ceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHc-cCCCeEEEEEE
Confidence 0011123334 49999999998776 8999999988754322222112211 3456666666 77999999999
Q ss_pred cCCCc
Q psy7039 433 NTVGS 437 (516)
Q Consensus 433 n~~G~ 437 (516)
|....
T Consensus 509 n~~l~ 513 (523)
T 2rcj_C 509 HEALH 513 (523)
T ss_pred cCCcC
Confidence 98643
No 54
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.91 E-value=3.4e-24 Score=211.06 Aligned_cols=269 Identities=16% Similarity=0.138 Sum_probs=158.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----------ceeeEEeeCCeeec----c
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----------FLNHGWSINGQVCQ----I 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----------~~~i~W~~~~~~~~----~ 183 (516)
.....+.+.+|+.+.|.|.+. +.| .+.+.|++++.... .
T Consensus 12 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~ 65 (349)
T 4dep_C 12 DTMRQIQVFEDEPARIKCPLF--------------------------EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPI 65 (349)
T ss_dssp CCCCCCEEETTSCEEEECTCC--------------------------CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEEC
T ss_pred ceeeeEEEecCCeEEEEcccc--------------------------ccccccccccccCCCceEEEEECCCCCcccccc
Confidence 345568899999999999998 654 48999999874211 0
Q ss_pred ---CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-----------eeccccCCceEEEEEE
Q psy7039 184 ---GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-----------TDNNVHEGKAYEYRVS 249 (516)
Q Consensus 184 ---~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-----------~~~~l~~g~~~~~~~~ 249 (516)
....++... ...|.|.+++.+|+|.|+|.+.|..+.......+.+... ....+..|....+.|.
T Consensus 66 ~~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 143 (349)
T 4dep_C 66 NFRLPENRISKE--KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCP 143 (349)
T ss_dssp CCCCGGGCEEEE--TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECC
T ss_pred cccccCceEeec--CCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcC
Confidence 011222212 348999999999999999999998887765554433221 1234568999999997
Q ss_pred EEcc--CCCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecC-CCc---ceeEEEEEecCCCC
Q psy7039 250 AVNA--AGTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY-GID---MADIEVVVVSKPGP 320 (516)
Q Consensus 250 ~~~~--~g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~-g~~---~~~~~l~v~~~p~~ 320 (516)
+... .|.|.|.+.|.+.. ..+..+ ......|.|.++..+|+|.|+|.|.|.. |.. ...+.+.|...+..
T Consensus 144 ~~~~~~~g~p~~~v~W~k~~~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~ 221 (349)
T 4dep_C 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNV--IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN 221 (349)
T ss_dssp SCTTSSCTTSCCEEEEEETTEECCSCSSE--EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG
T ss_pred CCcccccCCCCceEEEeeCCEECCCccce--eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC
Confidence 6443 67899999996521 111111 1223679999999999999999999987 443 45666666654321
Q ss_pred CCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe----eecCCceEEEECCeec
Q psy7039 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS----GRPKPTPIWTVNGDEV 396 (516)
Q Consensus 321 p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~----g~p~~~i~W~~~~~~l 396 (516)
...|..... .......+..|+.+.|.|.+. |.|.+.+.|++++..+
T Consensus 222 ~~~p~i~~~------------------------------~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l 271 (349)
T 4dep_C 222 AVPPVIHSP------------------------------NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271 (349)
T ss_dssp CCSCEEC----------------------------------------------CCCEEEEECCCTTCCCEEEEESSCC--
T ss_pred CCCCeEecC------------------------------CCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEc
Confidence 111111000 000112678999999999998 4688899999999877
Q ss_pred CC-CCceEEEE------cC---CeEEEEEcCceecCCc-eEEEEEEEcCCCceeEEEEEEEec
Q psy7039 397 SP-DGRIKFET------SE---NQTIYRNKSAKRATDS-GSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 397 ~~-~~~~~~~~------~~---~~~~l~i~~~~~~~~~-g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.. ..++.... .. ....|.|.++.. .|. |.|+|.|.|..|....++.|.|..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTS-EDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp ------CCCCEEEECCTTCCEEEEECC--------------CEEEEECSSCEEEEECC-----
T ss_pred cccCCccccccceeeecCCCcEEEEEEEEeeccH-HHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 54 22222210 01 124599999999 999 999999999999998888888853
No 55
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.91 E-value=2.2e-23 Score=208.27 Aligned_cols=294 Identities=16% Similarity=0.200 Sum_probs=193.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~ 191 (516)
+|.|...+...+.+.+|+.+.|.|.+. |.|.+.+.|++ ++..+....+.....
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~~g~~~~~~~~~~~~~ 56 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKAS--------------------------GNPMPEIIWIRSDGTAVGDVPGLRQIS 56 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEE--------------------------EESCCEEEEEETTSCBCCCBTTTBEEC
T ss_pred CCchhhCCCceEEEEcCccEEEEEECC--------------------------CCCCCEEEEEcCCCCccccCCCceEEc
Confidence 455553444457788999999999999 99999999999 777776544333322
Q ss_pred cCCeeEEEeccCCCCC------CeeEEEEEEcCCCceE-EEEEeece-------eeeeccccCCceEEEEEEEEccCCCC
Q psy7039 192 TKSETVLDIPFCSRSD------TGHYSLTLENNLGTAT-ASAHVTGT-------EFTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d------~g~Y~c~~~~~~g~~~-~~~~~~~~-------~~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
...+|.|.+++.+| +|.|+|.+.|..|... ..+.+... ......+.+|+.+.|.|.+....+.+
T Consensus 57 --~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~ 134 (388)
T 2v5m_A 57 --SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134 (388)
T ss_dssp --STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTT
T ss_pred --CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCC
Confidence 33479999999987 9999999999887642 22222211 11234567899999999873222223
Q ss_pred CceecccccccceE-------EEEEecceeeEEEccCCCCCc-eEEEEEEEecCCCcce----eEEEEEecCCCC--CCC
Q psy7039 258 KPKISLDALIGKRI-------KEFVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDMA----DIEVVVVSKPGP--PTG 323 (516)
Q Consensus 258 ~p~i~W~~~~~~~~-------~~~~~~~~~~l~i~~l~~~d~-g~y~c~a~n~~g~~~~----~~~l~v~~~p~~--p~~ 323 (516)
.+.+.|.+...... ........+.|.|.+++.+|. |.|+|.+.|..+.... ...+.|..+... |..
T Consensus 135 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~ 214 (388)
T 2v5m_A 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214 (388)
T ss_dssp EEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEEC
T ss_pred cceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcC
Confidence 47899975322110 001123456899999999999 9999999998644221 124444432110 000
Q ss_pred CceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec------C
Q psy7039 324 PIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV------S 397 (516)
Q Consensus 324 p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l------~ 397 (516)
+ ........+..|+.+.|.|.+.|.|.+.+.|++++..+ .
T Consensus 215 ~----------------------------------~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~ 260 (388)
T 2v5m_A 215 P----------------------------------ALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVV 260 (388)
T ss_dssp C----------------------------------SSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECC
T ss_pred c----------------------------------cccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCccccccc
Confidence 0 00122346789999999999999999999999975432 1
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeC
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~ 473 (516)
...++... ...|.|.++.. .|.|.|+|.|.|..|..+..+.|.|..+|.....+.......++.+.|.+..
T Consensus 261 ~~~~~~~~----~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~ 331 (388)
T 2v5m_A 261 LNDRVKQV----SGTLIIKDAVV-EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY 331 (388)
T ss_dssp CSSSEEEE----TTEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEE
T ss_pred ccCceecc----cCEEEECcCCH-HHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEe
Confidence 22333221 23799999999 9999999999999999888888988865532111112222345666666653
No 56
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.90 E-value=2.7e-24 Score=210.88 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=189.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee--ccCCceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC--QIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~--~~~~~~~~~ 190 (516)
.|.+. ..+..+.+.+|+.+.|.|.+.+ |. + | ..+.|.+.+.|++++..+ ....+.++.
T Consensus 18 ~p~~~-~~~~~~~v~~G~~v~L~C~~~~---~~--~-------------~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~ 77 (339)
T 3o4o_C 18 CRFRG-RHYKREFRLEGEPVALRCPQVP---YW--L-------------W-ASVSPRINLTWHKNDSARTVPGEEETRMW 77 (339)
T ss_dssp CEEEE-ECSCCEEEETTBCCEEECTTSC---SS--C-------------C-STTSSCCBCCCEESSCCSCCSCCSSSCEE
T ss_pred hHhhC-cCceEEEEECCccEEEEecccc---cc--c-------------c-ccCCCCceEEEEECCCCcccCccccccEE
Confidence 45555 5667889999999999999850 00 0 0 004677899999998774 322122332
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee---------eeccccCCceEEEEEEEEc--cCCCCCc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF---------TDNNVHEGKAYEYRVSAVN--AAGTEKP 259 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~---------~~~~l~~g~~~~~~~~~~~--~~g~p~p 259 (516)
.. ..+|.|.+++.+|+|.|+|.+.|..|.......+.+... ....+..|..+.|.|.+.. ..|.|.+
T Consensus 78 ~~--~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~ 155 (339)
T 3o4o_C 78 AQ--DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV 155 (339)
T ss_dssp EE--TTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCC
T ss_pred ee--CCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCc
Confidence 22 348999999999999999999998876665554443221 1235678999999998322 2788999
Q ss_pred eecccccc----cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC----cceeEEEEEecCCCCCCCCceeeecc
Q psy7039 260 KISLDALI----GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI----DMADIEVVVVSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 260 ~i~W~~~~----~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~p~~p~~~~~~~ 331 (516)
.+.|.+.. ..............|.|.++..+|.|.|+|.|.|..|. ....+.|.|...+... .|..+
T Consensus 156 ~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~-~P~i~---- 230 (339)
T 3o4o_C 156 KIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET-IPVII---- 230 (339)
T ss_dssp CBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCC-CCEEC----
T ss_pred eEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCC-CCEEe----
Confidence 99996521 11112222334468999999999999999999998874 3456677776543211 11100
Q ss_pred CCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEE---eeec-CCceEEEECCeecCC---------
Q psy7039 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF---SGRP-KPTPIWTVNGDEVSP--------- 398 (516)
Q Consensus 332 ~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~---~g~p-~~~i~W~~~~~~l~~--------- 398 (516)
..+....+..|+.+.|.|.+ .|.| .+.+.|++++..+..
T Consensus 231 ----------------------------~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~ 282 (339)
T 3o4o_C 231 ----------------------------SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTE 282 (339)
T ss_dssp ----------------------------CCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEE
T ss_pred ----------------------------cCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccccccccccee
Confidence 11234467789999999999 8999 789999999876532
Q ss_pred CCceEEEEcCC---eEEEEEcCceecCCc-eEEEEEEEcCCCceeEEEEEEE
Q psy7039 399 DGRIKFETSEN---QTIYRNKSAKRATDS-GSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 399 ~~~~~~~~~~~---~~~l~i~~~~~~~~~-g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.++.....+. ...|.|.++.. .|. |.|+|.|.|..|..+..+.+.+
T Consensus 283 ~~~~~~~~~g~~~~~~~L~i~~v~~-~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 283 GPRQEYSENNENYIEVPLIFDPVTR-EDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CCCEECCCSSSCEEEECCEECSSCC-CSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred cceEEecccCceEEEEEEEEEEech-hhcCccEEEEEEeccCceEEEEEhhH
Confidence 12222222222 12699999999 997 9999999999999877665544
No 57
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.90 E-value=1.9e-25 Score=243.57 Aligned_cols=309 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccC--cccceEEecCCeEEEEEeeeecccccc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRS--TLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...|.|.+++..|.|.|+|.|.|..|....+. ...+.+. .+|.+... ......+.+|+.+.|.|.+.
T Consensus 380 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~-~~~l~v~---~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~------- 448 (772)
T 3v2a_R 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSH-VVSLVVY---VPPQIGEKSLISPVDSYQYGTTQTLTCTVY------- 448 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCChhcCceEEEEEEECCcCeEEEE-EEEEEEe---cCCcccccccCCCccccCCCCcEEEEeEec-------
Confidence 47789999999999999999999887644322 2222221 34544311 11112378999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEeeCCee--------------------------------ecc-CCceEEee-
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQV--------------------------------CQI-GGRADVQT- 191 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~--------------------------------~~~-~~~~~~~~- 191 (516)
+.|.+. +.|++++.. +.. ..+..+..
T Consensus 449 -------------------g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 509 (772)
T 3v2a_R 449 -------------------AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEG 509 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------cCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccC
Confidence 888886 999986321 100 00111111
Q ss_pred -cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee---e---eeccccCCceEEEEEEEEccCCCCCceeccc
Q psy7039 192 -TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---F---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 192 -~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~---~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
......|.|.++ +|+|.|+|.+.|..|.......+.+.. + ....+.+|+.+.+.|.+ .|.|.+.+.|.
T Consensus 510 ~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~---~~~p~~~v~W~ 584 (772)
T 3v2a_R 510 KNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA---DRSTFENLTWY 584 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEec---cCCCCCCcEEE
Confidence 112357788776 789999999999988776655433321 1 12346689999999998 78899999997
Q ss_pred ccccceE-----EE--------------------EEecceeeEEEccCCCCCceEEEEEEEecCCCcc--eeEEEEEe--
Q psy7039 265 ALIGKRI-----KE--------------------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEVVVV-- 315 (516)
Q Consensus 265 ~~~~~~~-----~~--------------------~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~--~~~~l~v~-- 315 (516)
+...... .. ........|.|.++..+|+|.|+|.|.|..+... ....+.|.
T Consensus 585 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~ 664 (772)
T 3v2a_R 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeeccccc
Confidence 6321110 00 0011233599999999999999999999655432 23444443
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
.+|... ..+.+..+..|+.+.|.|.+.|.|.|.|.|++++..
T Consensus 665 ~~P~~~--------------------------------------~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~ 706 (772)
T 3v2a_R 665 VAPTIT--------------------------------------GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET 706 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEee--------------------------------------cCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeE
Confidence 222211 123446688999999999999999999999999998
Q ss_pred cCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 396 l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+..+.++.+. .+...|.|.++.. .|+|.|+|.|.|..|....++.|.|..+|+..
T Consensus 707 l~~~~~~~~~--~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 761 (772)
T 3v2a_R 707 LVEDSGIVLK--DGNRNLTIRRVRK-EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761 (772)
T ss_dssp ----------------------------------------------------------
T ss_pred CcCCCCeEEc--CCCcEEEECcCCH-HHCEEEEEEEEeCCcceeEEEEEEEECCCCcc
Confidence 8766554443 2346899999999 99999999999999999999999999887765
No 58
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.90 E-value=2.1e-22 Score=190.29 Aligned_cols=232 Identities=16% Similarity=0.114 Sum_probs=170.1
Q ss_pred EEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCce--eeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 125 KIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFL--NHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 125 ~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
.+.+|+.+.|.|.+. + .|.+ .+.|++++..+.. .+...+. .|.|.
T Consensus 14 ~v~~G~~v~l~C~~~--------------------------g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~ 61 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLD--------------------------GLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAK 61 (265)
T ss_dssp EEETTEEEEEEEEEE--------------------------SCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEE
T ss_pred eEecCCCEEEEEEcc--------------------------CCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEE
Confidence 678999999999999 7 7766 9999999988764 2222222 45554
Q ss_pred cC---CCCCCee--EEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCCceecccccccc
Q psy7039 202 FC---SRSDTGH--YSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269 (516)
Q Consensus 202 ~~---~~~d~g~--Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~ 269 (516)
.+ +..|+|. |+|.+.|..|.......+.+.. .....+.+|+.+.|.|.+ . |.|.+.|++ .
T Consensus 62 ~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~---~--p~~~i~W~g---~ 133 (265)
T 2oz4_A 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA---H--PRAKVTLNG---V 133 (265)
T ss_dssp EEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC---C--TTSEEEESS---C
T ss_pred eecccccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEc---c--CCCEEEECC---E
Confidence 44 7778774 9999999888776555443322 123446779999999987 3 889999922 2
Q ss_pred eEEEEEecceeeEEEccCCCCCceEEEEEEEec-CCCcc---eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCC
Q psy7039 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND-YGIDM---ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345 (516)
Q Consensus 270 ~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~-~g~~~---~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~ 345 (516)
.. ...+....|.|..+..+|.|.|+|.|.|. .|... ..+.|.|..+|.....
T Consensus 134 ~~--~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~---------------------- 189 (265)
T 2oz4_A 134 PA--QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER---------------------- 189 (265)
T ss_dssp SS--SCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGG----------------------
T ss_pred Ec--cCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccc----------------------
Confidence 21 11234567889999999999999999865 46654 5677777766654211
Q ss_pred CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCce
Q psy7039 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425 (516)
Q Consensus 346 ~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g 425 (516)
..+....+.+|+.+.|.|.+.|.|.+.+.|++++..+..... + ..+.. .|+|
T Consensus 190 --------------~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~-----------~--~~v~~-~d~G 241 (265)
T 2oz4_A 190 --------------DCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-----------S--VTVTR-DLEG 241 (265)
T ss_dssp --------------GSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-----------C--EECCG-GGCE
T ss_pred --------------cCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCc-----------E--EEeeh-hhCe
Confidence 123456789999999999999999999999999972221111 1 13677 9999
Q ss_pred EEEEEEEcCCCceeEEEEEEEec
Q psy7039 426 SYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 426 ~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
.|+|.|.|..|..+.++.|.|..
T Consensus 242 ~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 242 TYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEEECCCCcEEEEEEEEEec
Confidence 99999999999999999998864
No 59
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.89 E-value=6.1e-23 Score=196.58 Aligned_cols=267 Identities=15% Similarity=0.159 Sum_probs=178.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +. +.|++++. .+..+..
T Consensus 3 ~~P~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------~~----v~W~~~~~-----~~~~~~~ 46 (292)
T 4dkd_C 3 SIPVIE-PSVPELVVKPGATVTLRCVGN--------------------------GS----VEWDGPPS-----PHWTLYS 46 (292)
T ss_dssp -CCEEE-SCCSSCEECTTCCEEEEEECS--------------------------SC----CCBCCCCC-----SSCEECC
T ss_pred CCceec-CCCCeEEEcCCCcEEEEEcCC--------------------------Cc----eEEccCCC-----CceEEec
Confidence 467776 556778999999999999998 53 88886543 2334444
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----e----eeccccCCceEEEEEEEEccCCCCC--cee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----F----TDNNVHEGKAYEYRVSAVNAAGTEK--PKI 261 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~----~~~~l~~g~~~~~~~~~~~~~g~p~--p~i 261 (516)
.+....|.|.+++.+|+|.|+|.+.|..+.......+.+.. + ....+.+|+.+.+.|.+ .+ +. +.+
T Consensus 47 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~---~~-~~~~~~v 122 (292)
T 4dkd_C 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL---TD-PVLEAGV 122 (292)
T ss_dssp BTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEE---SS-GGGGSSE
T ss_pred cCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeC---CC-CCcceeE
Confidence 55678999999999999999999998776665554333221 1 22346789999999998 55 43 779
Q ss_pred cccccccceE---EEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEE
Q psy7039 262 SLDALIGKRI---KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337 (516)
Q Consensus 262 ~W~~~~~~~~---~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l 337 (516)
.|.+..+... ..........|.|.++...|+|.|+|.|.|..+.. +..+.|.|...+..+.. +.
T Consensus 123 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~-i~----------- 190 (292)
T 4dkd_C 123 SLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA-LT----------- 190 (292)
T ss_dssp EEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE-EE-----------
T ss_pred EEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe-EE-----------
Confidence 9965322111 01112234459999999999999999999887754 34677777763321110 00
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEc--CCeEEEE
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETS--ENQTIYR 414 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~--~~~~~l~ 414 (516)
..+....+..|+.+.|.|.+.+.|.+ .+.|.+++..+........... .....|.
T Consensus 191 ----------------------~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~ 248 (292)
T 4dkd_C 191 ----------------------LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLN 248 (292)
T ss_dssp ----------------------EESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEE
T ss_pred ----------------------ccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEE
Confidence 01122344689999999999987754 6888888876643332222111 1235799
Q ss_pred EcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.++.. .|.|.|+|.|.|..|..+.++.|.|......+
T Consensus 249 i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 249 LDQVDF-QHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286 (292)
T ss_dssp ESSCCT-TSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred ECccCh-hcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence 999999 99999999999999999999999998765544
No 60
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.89 E-value=1.4e-23 Score=228.82 Aligned_cols=314 Identities=17% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|++.+..+ ...+.... +... ...+|.+...++..+.+.+|+.+.|.|.+.
T Consensus 181 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~s~~~~-~~v~-~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~-------- 249 (772)
T 3v2a_R 181 SKKGFTIPSYMISYAGMVFCEAKINDE-SYQSIMYI-VVVV-GYRIYDVVLSPSHGIELSVGEKLVLNCTAR-------- 249 (772)
T ss_dssp TTTEEEEEGGGTTTCSEEEEEEEETTE-EEECCEEE-EEEE-CCCEEEEEEECCSCEEEETTCCEEEEEEEE--------
T ss_pred CCCCeEecCCChhhCeEEEEEEEECCc-eEEEEEEE-EEEe-cCccceeeeCCCCceEEecCCcEEEEEEEe--------
Confidence 467899999999999999999987533 22222122 2211 112344443455557899999999999998
Q ss_pred ccccccccccCccceeecC--cCceeeEEeeCCeeeccCCceEE--------eecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 148 PLRALGVRANSTKGWVKLS--EPFLNHGWSINGQVCQIGGRADV--------QTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+ .+.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+.|
T Consensus 250 ------------------~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 311 (772)
T 3v2a_R 250 ------------------TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 311 (772)
T ss_dssp ------------------ECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEEC
T ss_pred ------------------cCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEc
Confidence 5 45678999998877654322211 1122456899999999999999999999
Q ss_pred CCCceEEEEEeeceee----------eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccC
Q psy7039 218 NLGTATASAHVTGTEF----------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNS 287 (516)
Q Consensus 218 ~~g~~~~~~~~~~~~~----------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l 287 (516)
..+.......+.+... ....+.+|+.+.+.|.+ .|.|.|.+.|.+................|.|.++
T Consensus 312 ~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~---~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v 388 (772)
T 3v2a_R 312 GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKY---LGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEV 388 (772)
T ss_dssp SSCEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred CCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEE---eeeCCCeEEEEECCEeCCCCceEccceeEEEecC
Confidence 8886655544333211 12346789999999988 7889999999752211110001114578999999
Q ss_pred CCCCceEEEEEEEecCCCcc--eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
...|+|.|+|.|.|..|... ..+.|.|..+|...... ......
T Consensus 389 ~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~-----------------------------------~~~~~~ 433 (772)
T 3v2a_R 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKS-----------------------------------LISPVD 433 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccc-----------------------------------cCCCcc
Confidence 99999999999999988653 45566666555432110 001112
Q ss_pred EEEcCCeEEEEEEEeeecCCc-eEEEECCee--------------------------------cCC-CCceEEEEc--CC
Q psy7039 366 TVLAGEEFTITVPFSGRPKPT-PIWTVNGDE--------------------------------VSP-DGRIKFETS--EN 409 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~~~-i~W~~~~~~--------------------------------l~~-~~~~~~~~~--~~ 409 (516)
.+..|+.+.|.|.+.|.|.|. +.|++++.. +.. ..++..... ..
T Consensus 434 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~ 513 (772)
T 3v2a_R 434 SYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceE
Confidence 367899999999999999996 999986321 000 001111111 11
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
...|.|.++ .|.|.|+|.|.|..|.....+.+.|..+|.
T Consensus 514 ~~~L~i~~~---~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 552 (772)
T 3v2a_R 514 VSTLVIQAA---NVSALYKCEAVNKVGRGERVISFHVTRGPE 552 (772)
T ss_dssp ------------------------------------------
T ss_pred EEEEEEeec---ccCeEEEEEEEccccccceeEEEEEECCce
Confidence 245667665 678999999999999988888888876554
No 61
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.89 E-value=8.4e-21 Score=194.97 Aligned_cols=304 Identities=10% Similarity=0.056 Sum_probs=185.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCC----CCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPG----EASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~----~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
...+|.|.++++.|.|.|+|.+.|..|.. ... ....+.+.. ...+|.+...... .+.+|+.+.|.|.+.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~--- 151 (475)
T 1iga_A 78 TTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWG-QGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQ--- 151 (475)
T ss_pred CeEEEEECCCChhhCEEEEEEEeccCCCccceeeec-CceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEe---
Confidence 45689999999999999999999876521 111 112233321 2234555422222 236899999999999
Q ss_pred ccccCccccccccccCccceeecCc-Cc-e-eeEEeeCCeeeccCCceEEe--ecCC---eeEEEeccCCCCCCeeEEEE
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLSE-PF-L-NHGWSINGQVCQIGGRADVQ--TTKS---ETVLDIPFCSRSDTGHYSLT 214 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~-p~-~-~i~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~g~Y~c~ 214 (516)
+. |. + .+.|++++..........+. ..+. .+.|.|..+...|.|.|+|.
T Consensus 152 -----------------------g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~ 208 (475)
T 1iga_A 152 -----------------------GFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCH 208 (475)
T ss_pred -----------------------eecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEE
Confidence 65 55 3 99999887432111000011 1111 24688999999999999999
Q ss_pred EEcCCCce-EEEEEee---------------------ceee-e----eccccCCceEEEEEEEEccCCCCC---ceeccc
Q psy7039 215 LENNLGTA-TASAHVT---------------------GTEF-T----DNNVHEGKAYEYRVSAVNAAGTEK---PKISLD 264 (516)
Q Consensus 215 ~~~~~g~~-~~~~~~~---------------------~~~~-~----~~~l~~g~~~~~~~~~~~~~g~p~---p~i~W~ 264 (516)
+.|..+.. ...+.+. .... . ...+..|+.+.+.|.+ .|.++ +.+.|+
T Consensus 209 a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~---~g~~p~~~~~i~W~ 285 (475)
T 1iga_A 209 VKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTL---TGLRDASGVTFTWT 285 (475)
T ss_pred EEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEE---EcccCCCceEEEEC
Confidence 99987642 1112100 0111 1 1225789999999998 45533 689993
Q ss_pred ccccceE----EEEE-e---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeE
Q psy7039 265 ALIGKRI----KEFV-T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336 (516)
Q Consensus 265 ~~~~~~~----~~~~-~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~ 336 (516)
+...... .... . .....|.|.++..+|+|.|+|.|.|..|.......+.+.....+|. +.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~--v~~~-------- 355 (475)
T 1iga_A 286 PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE--VHLL-------- 355 (475)
T ss_pred CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe--EEEE--------
Confidence 3111100 0000 0 1345799999999999999999999988765444443311111211 1100
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC--CceEEEECCeecCCCCceEE--EEc---CC
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK--PTPIWTVNGDEVSPDGRIKF--ETS---EN 409 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~~~l~~~~~~~~--~~~---~~ 409 (516)
......+..|+.+.|.|.+.|.++ +.|.|+++|..+........ ... .+
T Consensus 356 ------------------------~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 411 (475)
T 1iga_A 356 ------------------------PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 411 (475)
T ss_pred ------------------------CCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCC
Confidence 011123567899999999998644 48999999988754421110 111 11
Q ss_pred -----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 410 -----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 410 -----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.|.|..... .+.|.|+|.|.|.....
T Consensus 412 gt~~~~s~L~i~~~~~-~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 412 TTFAVTSILRVAAEDW-KKGDTFSCMVGHEALPL 444 (475)
T ss_pred CcEEEEEEEEEChHHh-cCCCEEEEEEEcCCCCC
Confidence 14577877777 88999999999987653
No 62
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.89 E-value=3.3e-21 Score=183.76 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=168.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. .+|.+.........+.+|+.+.|.|.+.
T Consensus 59 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~---~~~~l~V~---~~p~~~~~~~~~~~v~~g~~~~l~C~~~-------- 124 (284)
T 2rik_A 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGVQ---EPPRFIKKLEPSRIVKQDEHTRYECKIG-------- 124 (284)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEE---EEEEEEEE---CCCEEEECCCSEEEEETTCCEEEEEEEE--------
T ss_pred CEEEEEEecCCcccCEEEEEEEEECCceEE---EEEEEEcc---CCCcccccCCCceEecCCceEEEEEEEe--------
Confidence 467899999999999999999999776532 12222222 3565543444556789999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 125 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 186 (284)
T 2rik_A 125 ------------------GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS 186 (284)
T ss_dssp ------------------SSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred ------------------eeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEE
Confidence 89999999999999998887777776777889999999999999999999999888766655
Q ss_pred eeceee-------eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 228 VTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 228 ~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
+.+... ....+..|..+.|.|.+ .|.|.|.+.|.+. .+....+........|.|.++..+|.|.|
T Consensus 187 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~---~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 263 (284)
T 2rik_A 187 LKVKEPPVFRKKPHPVETLKGADVHLECEL---QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263 (284)
T ss_dssp EEEECCCBCCSCCCCEEECTTCCEEEEEEC---BSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred EEEecCCcceeCCCcceecCCCeEEEEEEE---EecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEE
Confidence 443221 12346789999999998 7889999999652 23344454555667999999999999999
Q ss_pred EEEEEecCCCcceeEEEEEe
Q psy7039 296 KIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 296 ~c~a~n~~g~~~~~~~l~v~ 315 (516)
+|.|.|..|.....+.|.|.
T Consensus 264 ~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 264 QCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEeCCCceeEEEEEEEc
Confidence 99999999998888888774
No 63
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.88 E-value=5.7e-21 Score=206.77 Aligned_cols=357 Identities=13% Similarity=0.154 Sum_probs=216.7
Q ss_pred EEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcc
Q psy7039 71 SCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149 (516)
Q Consensus 71 ~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~ 149 (516)
.+.|..+.. ...+.|+|.+.+..|.... ....+.......+|.+. .+..+.+.+|+.+.|.|.+.
T Consensus 124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~--~~v~~~~~~~~~~p~~~--~~~~~~v~~G~~v~l~C~~~---------- 189 (731)
T 2v5y_A 124 ELAISTFWPNFYQVIFEVITSGHQGYLAI--DEVKVLGHPCTRTPHFL--RIQNVEVNAGQFATFQCSAI---------- 189 (731)
T ss_dssp EEEECCCTTSCEEEEEEEEECSSCCEEEE--CCBEEESSCCSSSCEEC--CCCCEEEETTSCEEEEEEEE----------
T ss_pred EEEEeecCCCceEEEEEEEecCCceEEEE--eeEEeeecccccccccc--cccceEEeCCCcEEEEEEeC----------
Confidence 456666533 3358999988777775332 12223333344567765 45578999999999999999
Q ss_pred ccccccccCccceeecCcCceeeE-Ee--eCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEE
Q psy7039 150 RALGVRANSTKGWVKLSEPFLNHG-WS--INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATAS 225 (516)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~p~~~i~-W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~ 225 (516)
|.|.+.+. |+ +++..+.......+......++|.|.++...|.|.|+|.+.|..|. ....
T Consensus 190 ----------------g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~ 253 (731)
T 2v5y_A 190 ----------------GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253 (731)
T ss_dssp ----------------SCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCC
T ss_pred ----------------CCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceee
Confidence 99999998 87 6777665332222222233579999999999999999999999887 3332
Q ss_pred EEeeceee-------eeccccCCceEEEEEEEEccCCCCCc---eecccccccceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 226 AHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGTEKP---KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 226 ~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
..+.+... ....+ ....+.+.+......|..+. .+.|....+....+ .......+.|.+|.+.+.|.|
T Consensus 254 ~~l~V~~~P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~ 331 (731)
T 2v5y_A 254 AELVVKEPPVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR-QPVDSTSYKIGHLDPDTEYEI 331 (731)
T ss_dssp EEEEEECCCCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEE-EECCSSEEEECSCCTTCEEEE
T ss_pred EEEEEecCCCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEE-eccCcceEEEeCCCCCCEEEE
Confidence 22221111 11111 12334444433111121111 23333221211111 234457899999999999999
Q ss_pred EEEEE--ecCCCcceeEEEEEecCCCCC-CCC--ceeeeccCCeeEEEecCCCCCCC-CceeeccccccccccccEEEEc
Q psy7039 296 KIEAK--NDYGIDMADIEVVVVSKPGPP-TGP--IDYTTVTPESVSMSWKPPVDDGG-TPITGAPKITSDLSIRDMTVLA 369 (516)
Q Consensus 296 ~c~a~--n~~g~~~~~~~l~v~~~p~~p-~~p--~~~~~~~~~~~~l~W~~p~~~~~-~~i~~y~~~~~~~~~~~~~v~~ 369 (516)
+|.|. |..|....+..+.+...+..| ..| +.+..++.+++.|+|++|..+.+ ..+.+|.
T Consensus 332 ~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~--------------- 396 (731)
T 2v5y_A 332 SVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLT--------------- 396 (731)
T ss_dssp EEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEE---------------
T ss_pred EEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEE---------------
Confidence 99999 999887655445555443322 333 66778899999999998854321 2233331
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeecCCC-CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 370 g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~-~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
|.|...+...... ....+........+.|.+|.+ ...|.|++.|.|..|.+. +..+.+.+
T Consensus 397 -----------------v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~s~-S~~~~~~T 457 (731)
T 2v5y_A 397 -----------------VHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSP-YTNVSVKLILMNPEGRKE-SQELIVQT 457 (731)
T ss_dssp -----------------EEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCS-SCEEEEEEEEECSSCEEE-CCCEEEEC
T ss_pred -----------------EEEEEccCCCCccceeEEEEecCCcceEEECCCCC-CCEEEEEEEEEcCCCCCC-CceEEEEc
Confidence 1111111000000 000001112335688999999 999999999999999863 66666765
Q ss_pred CCCCCC--CCcccccc-cCCeEEEEeeCCCCCCCCCcceEEEEEEecCC
Q psy7039 449 KPSPPQ--GPLDVSDI-TPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494 (516)
Q Consensus 449 ~p~~P~--~~l~~~~~-~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~ 494 (516)
...+|. ..+.+... ..+++.|+|++|.. .++.|.+|.|+|+..+.
T Consensus 458 ~~~~P~~p~~~~~~~~~~~~si~l~W~~P~~-~~g~i~~Y~V~~~~~~~ 505 (731)
T 2v5y_A 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQ-TYGVITLYEITYKAVSS 505 (731)
T ss_dssp CCCCCCCCCTTTCEEEEETTEEEEECCCCSC-CSSCCCEEEEEEEEEEE
T ss_pred cCCCCCCCCcceEEeeecCCeEEEEEcCCCC-CCCCccceEEEEEECcC
Confidence 444331 12233322 46899999999864 45689999999988754
No 64
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.88 E-value=3.6e-21 Score=196.77 Aligned_cols=303 Identities=9% Similarity=0.085 Sum_probs=177.4
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCC--------C--CCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGP--------G--EASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDV 136 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~--------~--~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C 136 (516)
...+|.|.+++..|.|.|+|.|.|..|. . ... ....+.+.. ...+|.+. .......+.+|+.+.|.|
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~i~-~~~~~~~~~~g~~v~L~C 154 (457)
T 1hzh_H 77 NTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWG-KGTTVIVSSASTKGPSVF-PLAPSSKSTSGGTAALGC 154 (457)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCC-CCEEEEECSCCCBCCEEE-EECCCSCCCTTCCEEEEE
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCccccccccccccceEC-CcEEEEecCCCCCCCeEE-ecCccccccCCCcEEEEE
Confidence 4568999999999999999999987651 0 111 112233222 22345544 222223467899999999
Q ss_pred eeeeccccccCccccccccccCccceeecCc-Cc-eeeEEeeCCeeeccCCceEEeecCC----eeEEEeccCCCCCCee
Q psy7039 137 KEFRELSYTKSPLRALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQIGGRADVQTTKS----ETVLDIPFCSRSDTGH 210 (516)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~ 210 (516)
.+. +. |. +.+.|++++..+...........++ ...|.|.++..+| |.
T Consensus 155 ~~~--------------------------g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~ 207 (457)
T 1hzh_H 155 LVK--------------------------DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT 207 (457)
T ss_dssp EEE--------------------------SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SC
T ss_pred EEe--------------------------EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ce
Confidence 999 65 64 7999999886542111111111111 2479999999999 99
Q ss_pred EEEEEEcCCCceEEEEEeec--------------------eee-ee----c-cccCCceEEEEEEEEccCCCCCc----e
Q psy7039 211 YSLTLENNLGTATASAHVTG--------------------TEF-TD----N-NVHEGKAYEYRVSAVNAAGTEKP----K 260 (516)
Q Consensus 211 Y~c~~~~~~g~~~~~~~~~~--------------------~~~-~~----~-~l~~g~~~~~~~~~~~~~g~p~p----~ 260 (516)
|+|.+.|..+.......+.. ..+ .. . .+..|+.+.|.|.+ .|.+++ .
T Consensus 208 Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~---~g~~p~p~~~~ 284 (457)
T 1hzh_H 208 YICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVV---VDVSHEDPEVK 284 (457)
T ss_dssp CEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEE---ECCCTTCCCCE
T ss_pred EEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEE---EcccCCCCceE
Confidence 99999998776544433221 111 11 1 15679999999998 566443 8
Q ss_pred eccccccc----ceEEEEEecceeeEEEcc---CCCCC---ceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeee
Q psy7039 261 ISLDALIG----KRIKEFVTSTTASLNIKN---SVRKD---SGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTT 329 (516)
Q Consensus 261 i~W~~~~~----~~~~~~~~~~~~~l~i~~---l~~~d---~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~ 329 (516)
+.|.+... ...........+.+.+.. +...| +|.|+|.|.|..+.......+.+. ....+|. +.+.
T Consensus 285 i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~- 361 (457)
T 1hzh_H 285 FNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ--VYTL- 361 (457)
T ss_dssp EEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE--EEEE-
T ss_pred EEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe--EEEE-
Confidence 99965321 111111222333444332 34555 999999999876554333333221 1111110 1000
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEc
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETS 407 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~ 407 (516)
+ .....+..|+ +.|.|.+.|.+++ .|.|+++|..+...........
T Consensus 362 -----------~--------------------~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 409 (457)
T 1hzh_H 362 -----------P--------------------PSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD 409 (457)
T ss_dssp -----------C--------------------CCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEEC
T ss_pred -----------C--------------------CCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeC
Confidence 0 0001123445 9999999997654 8999999988753221111111
Q ss_pred CC-----eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 408 EN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 408 ~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+ ...|.|..... .|.|.|+|.|.|.....
T Consensus 410 ~~g~~~~~s~l~i~~~~~-~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 410 SDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEALHN 444 (457)
T ss_dssp TTSCEEEEEEEEEEHHHH-HTTCCEEEEEECTTSGG
T ss_pred CCCCEEEEEEEEEChHHc-cCCCeEEEEEEECCCCC
Confidence 11 13466666666 68999999999987554
No 65
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.88 E-value=1.8e-19 Score=178.63 Aligned_cols=310 Identities=17% Similarity=0.202 Sum_probs=190.1
Q ss_pred CCCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEeCCC-CeE-EeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKDKTG-NWE-KAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~-~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
+|++|.+|++..+.++ +|.|+|.+|. ++.+.+|.|+++..++ .|. .........+++.|.+|.+++.|.|+|+|
T Consensus 1 Pp~~P~~l~~~~~~~~~sv~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 77 (368)
T 1fnf_A 1 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 77 (368)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCS---CSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred CCCCCcceEEEecCCCcEEEEEEeCCC---CCCceEEEEEEEECCCCCCceeEEEecCCcCEEEECCCCCCCEEEEEEEE
Confidence 6899999999988776 5999999974 2469999999998655 221 12234567899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+.. ....+...+| . .|.+... +...
T Consensus 78 ~~~~g~s~~~~----~~~~~~~~~p-------~----------~l~~~~~--------------------------~~~s 110 (368)
T 1fnf_A 78 VKDDKESVPIS----DTIIPAVPPP-------T----------DLRFTNI--------------------------GPDT 110 (368)
T ss_dssp EETTEECCCEE----EEECCCCCCC-------E----------EEEEESC--------------------------CSSC
T ss_pred EcCCCccCcee----eeecCCCcCC-------c----------eeEEEEc--------------------------CCCe
Confidence 99888665421 1221111111 1 2222222 4456
Q ss_pred eeeEEeeCCe-eeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEEE--EeeceeeeeccccCCceEE
Q psy7039 170 LNHGWSINGQ-VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATASA--HVTGTEFTDNNVHEGKAYE 245 (516)
Q Consensus 170 ~~i~W~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~~--~~~~~~~~~~~l~~g~~~~ 245 (516)
..+.|..... .+. .|........+. ..... ......+.+.+|.++..|.
T Consensus 111 i~l~W~~p~~~~~~---------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 163 (368)
T 1fnf_A 111 MRVTWAPPPSIDLT---------------------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYV 163 (368)
T ss_dssp EEEEEECCTTCCCS---------------------------EEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEE
T ss_pred EEEEeeCCCCCCCc---------------------------EEEEEEEECCCCCccEEEEcCCCcceEEecCCCCCCEEE
Confidence 6788876421 111 344433321111 00000 0111233444455555555
Q ss_pred EEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCc
Q psy7039 246 YRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325 (516)
Q Consensus 246 ~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~ 325 (516)
+++.+ .|..|.... ........+.+|. .+
T Consensus 164 ~~V~a-------------------------------------------------~~~~g~s~~-~~~~~~~~~~~P~-~l 192 (368)
T 1fnf_A 164 VSVSS-------------------------------------------------VYEQHESTP-LRGRQKTGLDSPT-GI 192 (368)
T ss_dssp EEEEE-------------------------------------------------EETTEECCC-EEEEEECCCCCCE-EE
T ss_pred EEEEE-------------------------------------------------EeCCCCCCC-eEeeecCCCCCCC-cc
Confidence 55554 444333221 1222223333332 27
Q ss_pred eeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE
Q psy7039 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405 (516)
Q Consensus 326 ~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~ 405 (516)
.+...+.+++.|+|.+|.. .+.+|. |.|...+.. .......
T Consensus 193 ~~~~~~~~sv~l~W~~p~~----~i~~Y~--------------------------------v~~~~~~~~---~~~~~~~ 233 (368)
T 1fnf_A 193 DFSDITANSFTVHWIAPRA----TITGYR--------------------------------IRHHPEHFS---GRPREDR 233 (368)
T ss_dssp EEESCCSSEEEEEEECCSS----CCSEEE--------------------------------EEEECSCCS---SCCEEEE
T ss_pred EEEEccCCEEEEEEeCCCC----CcCEEE--------------------------------EEEecCCCC---CCccEEE
Confidence 7777889999999998752 355551 222221110 1111222
Q ss_pred EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceE
Q psy7039 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNY 485 (516)
Q Consensus 406 ~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y 485 (516)
.......+.|.+|.+ ...|.|++.|.|..|.+..+. ......|.+| ..+.+..++.+++.|+|++|. ..+.+|
T Consensus 234 ~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~g~~~~~~-~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~i~~Y 306 (368)
T 1fnf_A 234 VPHSRNSITLTNLTP-GTEYVVSIVALNGREESPLLI-GQQSTVSDVP-RDLEVVAATPTSLLISWDAPA----VTVRYY 306 (368)
T ss_dssp EETTCCEEEEESCCT-TCEEEEEEEEEETTEECCCEE-EEEECCCCSC-EEEEEEEEETTEEEEEEECCS----SCCSEE
T ss_pred eCCCcCEEEECCCCC-CCEEEEEEEEEeCCccCCccc-ccccCCCCCC-CeeEEEecCCCEEEEEeeCCC----CccceE
Confidence 334445789999999 999999999999998755443 3456677877 788888889999999999875 248999
Q ss_pred EEEEEecCCCc
Q psy7039 486 VVEKYESATGV 496 (516)
Q Consensus 486 ~v~~~~~~~~~ 496 (516)
.|+|+..+...
T Consensus 307 ~v~~~~~~~~~ 317 (368)
T 1fnf_A 307 RITYGETGGNS 317 (368)
T ss_dssp EEEEEETTCCS
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 66
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=187.52 Aligned_cols=253 Identities=11% Similarity=0.047 Sum_probs=156.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeec---------cCCceE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQ---------IGGRAD 188 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~---------~~~~~~ 188 (516)
..+..+.+.+|+.+.|.|.+. +. |.+.+.|++++.... ...|+.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~ 61 (327)
T 2wng_A 8 QPDKSVSVAAGESAILHCTVT--------------------------SLIPVGPIQWFRGAGPARELIYNQKEGHFPRVT 61 (327)
T ss_dssp CCCSEEEEETTSCEEECCEES--------------------------CCCSCCCEEEEESCSTTCEEEEETTSSCCTTEE
T ss_pred cCCCceEEecCCcEEEEEEcc--------------------------CcCCCceEEEEECCCCCceEEEEcCCCCcceee
Confidence 556778999999999999999 76 888999999865321 012333
Q ss_pred Eeec-----CCeeEEEeccCCCCCCeeEEEEEEcCCCceE-------EEEEeece----ee--eeccccCCceEEEEEEE
Q psy7039 189 VQTT-----KSETVLDIPFCSRSDTGHYSLTLENNLGTAT-------ASAHVTGT----EF--TDNNVHEGKAYEYRVSA 250 (516)
Q Consensus 189 ~~~~-----~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-------~~~~~~~~----~~--~~~~l~~g~~~~~~~~~ 250 (516)
.... ....+|.|.+++.+|+|.|+|.+.|..+... ..+.+... .+ ....+.+|+.+.+.|.+
T Consensus 62 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~ 141 (327)
T 2wng_A 62 TVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCES 141 (327)
T ss_dssp ECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEE
T ss_pred eecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEE
Confidence 3221 4456899999999999999999999765421 12222111 11 12456789999999998
Q ss_pred EccCCCCCc--eecccccc----cceEEEEEec------ceeeEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEec-
Q psy7039 251 VNAAGTEKP--KISLDALI----GKRIKEFVTS------TTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVS- 316 (516)
Q Consensus 251 ~~~~g~p~p--~i~W~~~~----~~~~~~~~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~- 316 (516)
.|.+++ .+.|.+.. .......... ....|.|.....++.|.|+|.|.|..+.. .......+..
T Consensus 142 ---~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~ 218 (327)
T 2wng_A 142 ---HGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSET 218 (327)
T ss_dssp ---EEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGT
T ss_pred ---eCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccc
Confidence 566655 89996521 1111111111 12356677777777899999999987763 2222222211
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCe
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGD 394 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~ 394 (516)
...+|. +. + ... .+.+|+.+.|.|.+.|.+++ .+.|+++|.
T Consensus 219 v~~~P~--i~----------~-----------------------~~~--~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~ 261 (327)
T 2wng_A 219 IRVPPT--LE----------V-----------------------TQQ--PVRAENQVNVTCQVRKFYPQRLQLTWLENGN 261 (327)
T ss_dssp BCBCCE--EE----------E-----------------------EEE--CCSSTTCCEEEEEEEEEBSSCEEEEEEETTE
T ss_pred cCCCCE--EE----------E-----------------------ecC--CcCCCCcEEEEEEEccccCCCcEEEEEECCe
Confidence 111110 10 0 001 15689999999999996554 799999998
Q ss_pred ecCCCCceEEEEcCCe-----EEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 395 EVSPDGRIKFETSENQ-----TIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+............+. ..|.|..+.. .|.|.|+|.|.|..|..
T Consensus 262 ~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 262 VSRTETASTVTENKDGTYNWMSWLLVNVSAH-RDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp EEEEEECCSCEECTTSCEEEEEEEEC--------CCEEEEEEEETTCCC
T ss_pred EccCcccCceEECCCCcEEEEEEEEEccccc-cCCCEEEEEEEeCCCCC
Confidence 7643211111111111 4688999999 99999999999999874
No 67
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.87 E-value=2.4e-19 Score=178.23 Aligned_cols=313 Identities=17% Similarity=0.243 Sum_probs=192.3
Q ss_pred CCCCCcceEEEeeeCC-eeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 13 EPGKPTDLEATDWDKD-HVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~-~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
++++|.+|++..++++ ++.|+|++|. . +.+.+|+|+|+..++ ............+++.|.+|.+++.|.|+|+|
T Consensus 2 P~~~P~~l~~~~~~~~~sv~l~W~~~~-~--~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 78 (375)
T 3t1w_A 2 PLSPPTNLHLEANPDTGVLTVSWERST-T--PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT 78 (375)
T ss_dssp CCCCCEEEEEEEETTTTEEEEEEECCS-C--SSCCEEEEEEEETTCTTSCCEEEEEETTCCEEEECCCCTTCCEEEEEEE
T ss_pred CCCCCCccEEEecCCCeEEEEEEeCCC-C--CCeeeEEEEEEECCCCCCcceeEEcCCCccEEEEcCCcCCCEEEEEEEE
Confidence 5789999999999999 9999999973 2 358999999998554 11222344567899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+. ...... ..|. +..+.+. .. +...
T Consensus 79 ~~~~g~s~~~---~~~~~~---~~p~-----p~~l~~~----------~~--------------------------~~~s 111 (375)
T 3t1w_A 79 VKDDKESVPI---SDTIIP---EVPQ-----LTDLSFV----------DI--------------------------TDSS 111 (375)
T ss_dssp EETTEECCCE---EEEECC---CCCC-----CSCCEEE----------CC--------------------------CSSE
T ss_pred EcCCCCCCcE---EeeEcC---CCCC-----CceEEEE----------ec--------------------------CCCe
Confidence 9987765432 111111 1121 1112221 11 3344
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 249 (516)
..+.|..... . +.-.|...+......... ....
T Consensus 112 i~l~W~~~~~-----~---------------------~i~~Y~v~~~~~~~~~~~-------------------~~~~-- 144 (375)
T 3t1w_A 112 IGLRWTPLNS-----S---------------------TIIGYRITVVAAGEGIPI-------------------FEDF-- 144 (375)
T ss_dssp EEEECCCCCC-----T---------------------TEEEEEEEEEESSSCCSC-------------------EEEE--
T ss_pred EEEEEECCCC-----C---------------------CceEEEEEEEECCCCCce-------------------eEEE--
Confidence 5666754310 0 001344443321111000 0000
Q ss_pred EEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeee
Q psy7039 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~ 329 (516)
.......+.|.+|.+...|.|++.|.|..|...... +.....+.+| ..+.+..
T Consensus 145 -------------------------~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~p-~~l~~~~ 197 (375)
T 3t1w_A 145 -------------------------VDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQTAVPPP-TDLRFTN 197 (375)
T ss_dssp -------------------------ECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEECCCCCC-EEEEEES
T ss_pred -------------------------cCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeeecCCCCC-ceeEEEe
Confidence 001222445555666666666666666555443322 2222333332 2377777
Q ss_pred ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~ 409 (516)
.+.+++.|+|.+|.. ..+.+|. +.|...+.. ...........
T Consensus 198 ~~~~si~l~W~~p~~---~~i~~Y~--------------------------------v~~~~~~~~---~~~~~~~~~~~ 239 (375)
T 3t1w_A 198 IGPDTMRVTWAPPPS---IDLTNFL--------------------------------VRYSPVKNE---EDVAELSISPS 239 (375)
T ss_dssp CCSSCEEEEEECCSS---CCCCEEE--------------------------------EEEEEGGGT---TCCEEEEECTT
T ss_pred cccCEEEEEEcCCCC---CCccEEE--------------------------------EEEEeCCCC---CCcEEEEcCCC
Confidence 899999999998742 3345551 233322210 11222333444
Q ss_pred eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEE
Q psy7039 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489 (516)
Q Consensus 410 ~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~ 489 (516)
...+.|.+|.+ ...|.|++.|.|..|.+... ...+...|.+| ..+.+..++.+++.|+|++|. +.+.+|.|+|
T Consensus 240 ~~~~~i~~L~p-~t~Y~~~V~A~~~~g~s~~~-~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~ 312 (375)
T 3t1w_A 240 DNAVVLTNLLP-GTEYVVSVSSVYEQHESTPL-RGRQKTGLDSP-TGIDFSDITANSFTVHWIAPR----ATITGYRIRH 312 (375)
T ss_dssp CCEEEECSCCT-TCEEEEEEEEEETTEECCCE-EEEEECCCCCC-EEEEEESCCSSCEEEEEECCS----SCCSEEEEEE
T ss_pred cCEEEeCCCCC-CCEEEEEEEEEcCCCcCCce-eeEEecCCCCC-CccEeeeccCCEEEEEECCCC----cceeeEEEEE
Confidence 46799999999 99999999999998875443 44456677777 788888889999999999873 6699999999
Q ss_pred EecCC
Q psy7039 490 YESAT 494 (516)
Q Consensus 490 ~~~~~ 494 (516)
+..+.
T Consensus 313 ~~~~~ 317 (375)
T 3t1w_A 313 HPEHF 317 (375)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98875
No 68
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.87 E-value=1.7e-21 Score=189.04 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=162.8
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+. ..+.+|+++.|.|.+. +. .+.+.|++++..+.... ..
T Consensus 23 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~~-~~~~~W~k~g~~~~~~~----~~ 69 (316)
T 3vh8_G 23 DKPFLS-AWPS-AVVPRGGHVTLRCHYR--------------------------HR-FNNFMLYKEDRIHIPIF----HG 69 (316)
T ss_dssp -CCEEE-EESC-SEEETTSCEEEEEEBT--------------------------TB-CCSEEEEESSCSSSCHH----HH
T ss_pred CCCEee-ccCC-CccCCCCCEEEEEEcc--------------------------CC-CceEEEEeCCCccceee----cC
Confidence 466666 3333 5688999999999998 66 67899999987654211 11
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
......|.|.+++.+|+|.|+|.+.+..+ . ....+.+.. ..+ ....+.+|+.+.|.|.+ .+ +
T Consensus 70 ~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~---~~-~ 145 (316)
T 3vh8_G 70 RIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS---DI-M 145 (316)
T ss_dssp CCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE---SS-C
T ss_pred CcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC---CC-C
Confidence 23456899999999999999999986322 1 112222211 111 12236789999999987 33 4
Q ss_pred Cceecccccccce--E----EEEEecceeeEEEccCCCCCceEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCCce
Q psy7039 258 KPKISLDALIGKR--I----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGPID 326 (516)
Q Consensus 258 ~p~i~W~~~~~~~--~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p~~ 326 (516)
++.+.|.+..... . ..........|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+.+|. +.
T Consensus 146 ~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~--i~ 223 (316)
T 3vh8_G 146 FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPS--LS 223 (316)
T ss_dssp CSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCE--EE
T ss_pred CcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCe--EE
Confidence 5567775421111 1 11112356789999999999999999999987742 4456677765443321 10
Q ss_pred eeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE
Q psy7039 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406 (516)
Q Consensus 327 ~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~ 406 (516)
+ .....+.+|+.+.|.|.+. .+.+.+.|+++|..+..........
T Consensus 224 ----------~------------------------~~~~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~ 268 (316)
T 3vh8_G 224 ----------A------------------------QPGPKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKV 268 (316)
T ss_dssp ----------E------------------------ESCSCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECT
T ss_pred ----------e------------------------CCCCeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceecc
Confidence 0 0112457899999999997 4677999999997654221111111
Q ss_pred cC-CeEEEEEcCceecCCceEEEEEEEcCCCc-----eeEEEEEEEecCC
Q psy7039 407 SE-NQTIYRNKSAKRATDSGSYTIQLVNTVGS-----DSASCKVYVVDKP 450 (516)
Q Consensus 407 ~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v~~~p 450 (516)
.+ ....|.|.++. |+|.|+|.|.|..+. .+..+.|.|..+|
T Consensus 269 ~~~~~~~L~i~~v~---D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 269 NRTFQADFPLGPAT---HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp TSCEEEEEECC--------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CCceeEEEEcCCcC---CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 11 22579998885 999999999998763 4555677776654
No 69
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.87 E-value=2.5e-21 Score=197.10 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=181.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCC-CCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPG-EASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~-~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .... ...+.+. ....+|.+....+. ..+.+|+.+.|.|.+.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~------ 148 (444)
T 1igt_B 77 NTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQ-GTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVK------ 148 (444)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBC-CEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEE------
T ss_pred CeEEEEECCCCHHHCEEEEEEEecCCcccccccC-cEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEc------
Confidence 35689999999999999999999865431 0111 1223332 22234544322221 2247899999999998
Q ss_pred cCccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 146 KSPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+. |.+ .+.|++++..+...........+ ..+.|.|.++..+| |.|+|.+.|..+
T Consensus 149 --------------------g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~ 207 (444)
T 1igt_B 149 --------------------GYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS 207 (444)
T ss_dssp --------------------EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTT
T ss_pred --------------------ceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCC
Confidence 64 665 99999987653211000011111 13579999999999 999999999988
Q ss_pred ceEEEEEeec---------------------eee-e----ecc-ccCCceEEEEEEEEccCCC---C-Cceecccccccc
Q psy7039 221 TATASAHVTG---------------------TEF-T----DNN-VHEGKAYEYRVSAVNAAGT---E-KPKISLDALIGK 269 (516)
Q Consensus 221 ~~~~~~~~~~---------------------~~~-~----~~~-l~~g~~~~~~~~~~~~~g~---p-~p~i~W~~~~~~ 269 (516)
.......+.. ..+ . ... +..|+.+.|.|.+ .|. | .+.+.|.+....
T Consensus 208 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~---~g~~~~p~~~~v~W~k~~~~ 284 (444)
T 1igt_B 208 STKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVV---VDVSEDDPDVQISWFVNNVE 284 (444)
T ss_dssp TEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEE---EEECTTCCCCEEEEEETTEE
T ss_pred CcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEE---eecccCCCCeEEEEEECCcc
Confidence 7644433311 111 1 111 4789999999998 454 2 468999652110
Q ss_pred ------e-EEEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEE
Q psy7039 270 ------R-IKEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 270 ------~-~~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
. ..... ......|.|.++..+|.|.|+|.|.|..|.......+.+. ....+|. +.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~~--------- 353 (444)
T 1igt_B 285 VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ--VYVLP--------- 353 (444)
T ss_dssp CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE--EEEEC---------
T ss_pred ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE--EEEeC---------
Confidence 0 01100 0134589999999999999999999998876433333221 1111110 11000
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC-----eE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN-----QT 411 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~-----~~ 411 (516)
.....+ .+..+.|.|.+.|. |.+ .|.|+++|..+............+ .+
T Consensus 354 -----------------------~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s 409 (444)
T 1igt_B 354 -----------------------PPEEEM-TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYS 409 (444)
T ss_dssp -----------------------CCGGGT-TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEE
T ss_pred -----------------------CChHHc-cCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEE
Confidence 000011 23459999999985 555 899999998774321111111111 13
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.|..... +|.|.|+|.|.|..-.
T Consensus 410 ~l~i~~~~~-~d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 410 KLRVEKKNW-VERNSYSCSVVHEGLH 434 (444)
T ss_dssp EEEEEHHHH-HTCCCEEEEEECTTSG
T ss_pred EEEEChHHh-cCCCeEEEEEECCCcC
Confidence 466766666 7799999999998644
No 70
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.86 E-value=1.1e-20 Score=191.74 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=185.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc----eeeEEeeCC--eee-----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF----LNHGWSING--QVC----------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~i~W~~~~--~~~----------- 181 (516)
..+..+.+.+|+++.|.|.+. +.+. +.+.|++++ ..+
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~ 59 (438)
T 1qgc_4 6 QSPASLAVSLGQRATISCRAS--------------------------ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLE 59 (438)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCEETTEECEEEEEECTTSCCEEEESSSSCBC
T ss_pred ecCCeEEeeCCCCEEEEEecC--------------------------CCcccCCcceEEEEEECCCCCcEEEEEECcccC
Confidence 345678899999999999998 7766 489999853 221
Q ss_pred -ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeec----eeeee----ccccCCceEEEEEE
Q psy7039 182 -QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTG----TEFTD----NNVHEGKAYEYRVS 249 (516)
Q Consensus 182 -~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~----~~~~~----~~l~~g~~~~~~~~ 249 (516)
....|+.+...+...+|.|.+++.+|+|.|+|.+.|..+.. ...+.+.. ..+.. ....+|..+.+.|.
T Consensus 60 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~ 139 (438)
T 1qgc_4 60 SGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCF 139 (438)
T ss_dssp SSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEE
T ss_pred CCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEE
Confidence 11356666666677899999999999999999999977532 12233221 11111 11224778999999
Q ss_pred EEccCC-CCCc-eecccccc----cc-eEEEEE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 250 AVNAAG-TEKP-KISLDALI----GK-RIKEFV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 250 ~~~~~g-~p~p-~i~W~~~~----~~-~~~~~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
+ .| .|.| .+.|.+.. .. ...... .. ....|.|.++..+|+|.|+|.|.|..+...... .+.
T Consensus 140 ~---~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~--~~~ 214 (438)
T 1qgc_4 140 L---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK--SFN 214 (438)
T ss_dssp E---EEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE--EEE
T ss_pred E---ccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceec--ccc
Confidence 8 44 5767 89997521 11 111111 01 135799999999999999999999887753332 222
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec--CCceEEEEC-
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP--KPTPIWTVN- 392 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~- 392 (516)
..... +.+ ..+....+..|+.+.|.|.+.|.| .+.+.|+++
T Consensus 215 ~~~~~----~~~--------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~ 258 (438)
T 1qgc_4 215 RNECE----VML--------------------------------VESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQT 258 (438)
T ss_dssp TTC-C----CEE--------------------------------EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEE
T ss_pred cccce----eEE--------------------------------ecCCceEEecCCcEEEEEEEcccccCCcEEEEEECC
Confidence 21111 110 012345688999999999999988 679999986
Q ss_pred -CeecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeEEEEEEEe
Q psy7039 393 -GDEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSASCKVYVV 447 (516)
Q Consensus 393 -~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~s~~l~v~ 447 (516)
+..+. ...++.+... .....|.|.++.. .|+|.|+|.|.|..| .......+.|.
T Consensus 259 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~ 337 (438)
T 1qgc_4 259 PEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS-ADTAMYYCVRREDGGDEGFAYWGQGTVVTVS 337 (438)
T ss_dssp TTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG-GGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred CCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh-hhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence 43221 1345655543 3456899999999 999999999999554 22234567776
Q ss_pred cCC-CCCCC---CcccccccCCeEEEEeeC
Q psy7039 448 DKP-SPPQG---PLDVSDITPESCSLSWKP 473 (516)
Q Consensus 448 ~~p-~~P~~---~l~~~~~~~~~~~l~W~~ 473 (516)
..+ .+|.. ........++.++|.+..
T Consensus 338 ~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 367 (438)
T 1qgc_4 338 AAKTTPPSVYPLAPGSAAAAASMVTLGCLV 367 (438)
T ss_dssp SSCCBCCEEEEECCCGGGCCSSEEEEEEEE
T ss_pred cCCCCCCeEEEcCcccccccCCcEEEEEEe
Confidence 422 22310 001122356778888764
No 71
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.86 E-value=4.3e-19 Score=192.05 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=176.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe-
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV- 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~- 90 (516)
.+|.+|..+.+..++.+++.|+|.++..+++++|.+|.|+|+..++.|...... ...+++|.+|.+++.|.|+|.|.
T Consensus 260 ~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~V~A~~ 337 (731)
T 2v5y_A 260 EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPV--DSTSYKIGHLDPDTEYEISVLLTR 337 (731)
T ss_dssp CCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEEC--CSSEEEECSCCTTCEEEEEEEEEC
T ss_pred cCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEecc--CcceEEEeCCCCCCEEEEEEEEEe
Confidence 456666677777788999999999876667788999999999877788766543 56899999999999999999999
Q ss_pred -cCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 91 -NAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 91 -n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
|..|.+.++.... .......|. ..+. .|.+... +...
T Consensus 338 ~N~~G~s~~S~~~~---~~t~~~~p~---~~P~----------~~~~~~~--------------------------~~~s 375 (731)
T 2v5y_A 338 PGEGGTGSPGPALR---TRTKCADPM---RGPR----------KLEVVEV--------------------------KSRQ 375 (731)
T ss_dssp SSTTCSCCBCCCEE---EECCCCCCS---CCCE----------EEEEEEE--------------------------CSSC
T ss_pred cCCCccccCCCcEE---eeecCCCCC---CCCc----------eeEEEec--------------------------cCCe
Confidence 9999887665432 222211111 1222 2223333 4456
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~ 249 (516)
..+.|............ -.|........+.... ...-.
T Consensus 376 v~l~W~~p~~~~~~~~~----------------------~~y~v~y~~~~~~~~~--------------------~~~~~ 413 (731)
T 2v5y_A 376 ITIRWEPFGYNVTRCHS----------------------YNLTVHYCYQVGGQEQ--------------------VREEV 413 (731)
T ss_dssp EEEEEECCCHHHHCSSS----------------------CEEEEEEEEESSSSEE--------------------EEEEE
T ss_pred EEEEEECCCccccccee----------------------eeEEEEEEEccCCCCc--------------------cceeE
Confidence 77888764322111100 0233332211100000 00000
Q ss_pred EEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC--cee
Q psy7039 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP--IDY 327 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p--~~~ 327 (516)
... . ......+.|.+|.+...|.|++.|.|..|... +..+.+......|..| +.+
T Consensus 414 ~~~-~---------------------~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~~P~~p~~~~~ 470 (731)
T 2v5y_A 414 SWD-T---------------------ENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESI 470 (731)
T ss_dssp ECC-S---------------------SCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCEEEECCCCCCCCCCTTTC
T ss_pred EEE-e---------------------cCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceEEEEccCCCCCCCCcceE
Confidence 000 0 01223456677777777777777777776643 3344454443333322 233
Q ss_pred eec-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe---ecC-CCCce
Q psy7039 328 TTV-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EVS-PDGRI 402 (516)
Q Consensus 328 ~~~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~---~l~-~~~~~ 402 (516)
... ..+++.|+|++|...+| .|.+|. |.|...+. ... .....
T Consensus 471 ~~~~~~~si~l~W~~P~~~~g-~i~~Y~--------------------------------V~~~~~~~~~~~~~~~~~~~ 517 (731)
T 2v5y_A 471 QGSTFEEKIFLQWREPTQTYG-VITLYE--------------------------------ITYKAVSSFDPEIDLSNQSG 517 (731)
T ss_dssp EEEEETTEEEEECCCCSCCSS-CCCEEE--------------------------------EEEEEEEECC---CCCCCEE
T ss_pred EeeecCCeEEEEEcCCCCCCC-CccceE--------------------------------EEEEECcCCCccccccCcce
Confidence 322 47899999999987766 687872 11111100 000 01112
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCC--cc--cccccCCeEEEEeeCCCCCC
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP--LD--VSDITPESCSLSWKPPLDDG 478 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~--l~--~~~~~~~~~~l~W~~p~~~~ 478 (516)
..........++|.+|.+ ...|.|++.|.|..|.+..+. +.+.+.+.+|..+ +. ....+.+++.|+|++|. ++
T Consensus 518 ~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p~~~~~~~~~~~~~si~l~W~pp~-~~ 594 (731)
T 2v5y_A 518 RVSKLGNETHFLFFGLYP-GTTYSFTIRASTAKGFGPPAT-NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH-SR 594 (731)
T ss_dssp EEEEETTCCEEEECSCCT-TEEEEEEEEEEETTEEEEEEE-EEEECCCCCCCC---------------------------
T ss_pred EEeecCCcceEEecCCCC-CCEEEEEEEEEeCCccCCCcc-cEEEcCCCCCCCCCcccccccccCCceEEEEEeCCC-CC
Confidence 223334456799999999 999999999999999876663 5566555444221 11 24467789999999884 77
Q ss_pred CCCcceEEEEEEecCCC
Q psy7039 479 GSPITNYVVEKYESATG 495 (516)
Q Consensus 479 ~~~i~~Y~v~~~~~~~~ 495 (516)
+++|.+|.|+|++....
T Consensus 595 ~g~I~~Y~v~~~~~~~~ 611 (731)
T 2v5y_A 595 GAPVSVYQIVVEEERPR 611 (731)
T ss_dssp -----------------
T ss_pred CCceEEEEEEEEecCCC
Confidence 88999999999877543
No 72
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.85 E-value=1.9e-19 Score=161.65 Aligned_cols=192 Identities=20% Similarity=0.291 Sum_probs=144.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.+.
T Consensus 3 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~ 55 (197)
T 2j8h_A 3 MAPHFK-EELRNLNVRYQSNATLVCKVT--------------------------GHPKPIVKWYRQGKEIIADGLKYRIQ 55 (197)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCCCSSSEEEE
T ss_pred CCCEEE-EcCCccEEcCCCEEEEEEEEe--------------------------ecCCCEEEEEECCEECccCCCcEEEE
Confidence 467776 566778999999999999999 8999999999988776432 111111
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR 270 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~ 270 (516)
..
T Consensus 56 ~~------------------------------------------------------------------------------ 57 (197)
T 2j8h_A 56 EF------------------------------------------------------------------------------ 57 (197)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred Ec------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 271 ~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......|.|.++..+|+|.|+|.+.|..|.....+.|.|...|.....+.
T Consensus 58 -----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~------------------------- 107 (197)
T 2j8h_A 58 -----KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKT------------------------- 107 (197)
T ss_dssp -----TTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSC-------------------------
T ss_pred -----CCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCcc-------------------------
Confidence 01123566677777777777777777766666666666665443221100
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcC-ceecCCceEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKS-AKRATDSGSYTI 429 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~-~~~~~~~g~y~c 429 (516)
...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.+ +.. .|.|.|+|
T Consensus 108 --------~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C 178 (197)
T 2j8h_A 108 --------LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVV 178 (197)
T ss_dssp --------BTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCG-GGCEEEEE
T ss_pred --------ccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCc-ccCEeEEE
Confidence 01234567889999999999999999999999999998878888887777888999999 999 99999999
Q ss_pred EEEcCCCceeEEEEEEEe
Q psy7039 430 QLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 430 ~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|..|..+.++.|.|.
T Consensus 179 ~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 179 CAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCCcEeEEEEEEEe
Confidence 999999999888888886
No 73
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.85 E-value=2e-19 Score=161.13 Aligned_cols=190 Identities=21% Similarity=0.325 Sum_probs=145.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 6 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~ 58 (197)
T 3lcy_A 6 EAPGIR-KEMKDVTTKLGEAAQLSCQIV--------------------------GRPLPDIKWYRFGKELIQSRKYKMSS 58 (197)
T ss_dssp EEEEEE-ECCCCEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEEECCCSSEEEEE
T ss_pred CCCccc-ccCCceEEeCCCcEEEEEEEe--------------------------cCCCCEEEEEECCEECCCCccEEEEe
Confidence 356665 566778999999999999999 88999999999999887777777766
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI 271 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~ 271 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 59 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~------------------------------------------------ 90 (197)
T 3lcy_A 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVE------------------------------------------------ 90 (197)
T ss_dssp SSSEEEEEEECCSGGGCEEEEEEEECSSCEEE------------------------------------------------
T ss_pred CCCEEEEEEecCCccCCEEEEEEEECCCCcee------------------------------------------------
Confidence 66666777777777777777777766544322
Q ss_pred EEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCcee
Q psy7039 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPIT 351 (516)
Q Consensus 272 ~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~ 351 (516)
....+.|...|......
T Consensus 91 ------------------------------------~~~~l~v~~~p~~~~~~--------------------------- 107 (197)
T 3lcy_A 91 ------------------------------------TSSKLLLQATPQFHPGY--------------------------- 107 (197)
T ss_dssp ------------------------------------EEEEEEEEEEEEECTTS---------------------------
T ss_pred ------------------------------------EEEEEEEEcCCCCCCCc---------------------------
Confidence 11222222211111000
Q ss_pred eccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEE
Q psy7039 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQ 430 (516)
Q Consensus 352 ~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~ 430 (516)
.......+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++. . +|.|.|+|.
T Consensus 108 --------~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~ 178 (197)
T 3lcy_A 108 --------PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRK-THAGKYKVQ 178 (197)
T ss_dssp --------CCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHH-HHCEEEEEE
T ss_pred --------cCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccch-hhCceEEEE
Confidence 012335677899999999999999999999999999988888888877777899999998 5 799999999
Q ss_pred EEcCCCceeEEEEEEEec
Q psy7039 431 LVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 431 a~n~~G~~s~s~~l~v~~ 448 (516)
|.|..|....++.|.|.+
T Consensus 179 a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 179 LSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EECSSCEEEEEEEEEEEC
T ss_pred EEcCcCceEEEEEEEEec
Confidence 999999999999998875
No 74
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.84 E-value=1e-21 Score=199.49 Aligned_cols=300 Identities=7% Similarity=0.048 Sum_probs=181.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .. ...+.+. ....+|.+....+ ...+.+|+.+.|.|.+.
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~--~~-~~~l~V~~~~~~~P~i~~~~~-~~~~~~G~~v~L~C~~~------- 144 (434)
T 1igy_B 76 NTANIHLSSLTSDDSAVYYCVREGEVPYW--GQ-GTTVTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVK------- 144 (434)
T ss_dssp CBBCEEECSBCGGGCSEECCCCSSSSCCC--CC-CEECEECCSCCBCCCEEEECC-CCCCCCTTEEEEEEEEE-------
T ss_pred CEEEEEECCCChHHCEEEEEEEEcccccc--CC-ceEEEEccCCCCCCeEEEcCC-ccccCCCCcEEEEEEEe-------
Confidence 34589999999999999999998843221 11 1122222 2223455442222 22357899999999999
Q ss_pred CccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 147 SPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+. |.+ .+.|++++..+...........+ ..+.|.|.+++.+| |.|+|.+.|..+.
T Consensus 145 -------------------g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~ 204 (434)
T 1igy_B 145 -------------------GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASS 204 (434)
T ss_dssp -------------------EEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTT
T ss_pred -------------------eecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCC
Confidence 64 665 99999988653210000011011 12479999999989 9999999999887
Q ss_pred eEEEEEeec---------------ee-ee-e---cc-ccCCceEEEEEEEEccCCCC----CceecccccccceE-----
Q psy7039 222 ATASAHVTG---------------TE-FT-D---NN-VHEGKAYEYRVSAVNAAGTE----KPKISLDALIGKRI----- 271 (516)
Q Consensus 222 ~~~~~~~~~---------------~~-~~-~---~~-l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~~~~~----- 271 (516)
......+.. .. +. . .. +..|+...+.|.+ .|.+ .+.+.|.+......
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~---~g~~p~P~~~~i~W~k~~~~~~~~~~~ 281 (434)
T 1igy_B 205 TKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVV---VDISKDDPEVQFSWFVDNVEVHTAQTQ 281 (434)
T ss_dssp CCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEE---CCCCSSCCCCCBCBBSSSCCBCCCSCC
T ss_pred ccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEE---eccccCCCCeEEEEEeCCcccCCcccC
Confidence 543333211 01 11 1 11 7889999999998 5663 45899976321110
Q ss_pred EE-EE----ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEEecCCCCC
Q psy7039 272 KE-FV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345 (516)
Q Consensus 272 ~~-~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~ 345 (516)
.. .. ......|.|.++..+|.|.|+|.|.|..|.......+.+. ....+|. +.+..
T Consensus 282 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~~---------------- 343 (434)
T 1igy_B 282 PREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ--VYTIP---------------- 343 (434)
T ss_dssp CCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCC--CEEEC----------------
T ss_pred cceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCE--EEEEC----------------
Confidence 00 00 0123478999999999999999999988865332222210 1111111 11100
Q ss_pred CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCc
Q psy7039 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSA 418 (516)
Q Consensus 346 ~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~ 418 (516)
.......|..+.|.|.+.|.+++ .|.|+++|..+............+ .+.|.|...
T Consensus 344 -----------------~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~ 406 (434)
T 1igy_B 344 -----------------PPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKS 406 (434)
T ss_dssp -----------------CCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHH
T ss_pred -----------------CCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECch
Confidence 00012246679999999996543 899999998774321111100111 135777777
Q ss_pred eecCCceEEEEEEEcCCCc
Q psy7039 419 KRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~ 437 (516)
.. +|.|.|+|.|.|....
T Consensus 407 ~~-~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 407 NW-EAGNTFTCSVLHEGLH 424 (434)
T ss_dssp HH-HTTCCEEEEEEETTSG
T ss_pred hc-cCCCEEEEEEEcCCCC
Confidence 77 7899999999998754
No 75
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=181.39 Aligned_cols=222 Identities=18% Similarity=0.210 Sum_probs=159.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+. .+|.+. ..+....+..|+.+.|.|...+
T Consensus 59 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~---~~~l~v~---~~~~~~-~~~~~~~~~~g~~~~l~c~~~~------- 124 (317)
T 2y25_A 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKS---RLKLVDE---AFKELM-MEVCKKIALSATDLKIQSTAEG------- 124 (317)
T ss_dssp CCEEEEETTCCSTTCSCEEEEEESSSCEEEE---EECCSTH---HHHHHH-HHHHHHHHTCBCCCEEEECSSE-------
T ss_pred CeEEEEEccCCcccCeEEEEEEECCCCcEEE---EEEEEEe---cCcccc-ccCCceecccCCCeEEEeeccc-------
Confidence 3578999999999999999999998775321 1111111 122222 2223344567778888887760
Q ss_pred ccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.. +.-...+ .|.+.+.|++++..+....++.+...+....|.|.+++.+|+|.|+|.+.|..|......
T Consensus 125 ------~~----l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 194 (317)
T 2y25_A 125 ------IQ----LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194 (317)
T ss_dssp ------EE----EEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred ------cE----EEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEE
Confidence 00 0000001 688999999999999888888887777788899999999999999999999988877766
Q ss_pred Eeecee-----------------------e-----eeccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEE
Q psy7039 227 HVTGTE-----------------------F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKE 273 (516)
Q Consensus 227 ~~~~~~-----------------------~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~ 273 (516)
.+.... + ....+..|+.+.|.|.+ .|.|.|.+.|.+. ...+..+
T Consensus 195 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~ 271 (317)
T 2y25_A 195 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDPPPEVSWLKNEKALASDDHCNL 271 (317)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE---ECSSCCEEEEEESSSEECCCSSEEE
T ss_pred EEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE---ecCCCCEEEEEECCEeCCCCCcEEE
Confidence 544221 0 12356789999999998 7889999999652 2223333
Q ss_pred EEe-cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 274 FVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 274 ~~~-~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
... +....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 272 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 272 KFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp CCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 222 4456999999999999999999999999998888888864
No 76
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.84 E-value=2.2e-19 Score=171.64 Aligned_cols=213 Identities=15% Similarity=0.134 Sum_probs=153.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|... .....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~--~~~~~l~v~---~~~~~~-~~~~~~~~~~g~~v~l~C~~~-------- 125 (291)
T 1qz1_A 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQS--EATVNVKIF---QKLMFK-NAPTPQEFKEGEDAVIVCDVV-------- 125 (291)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSCEE--EEEEEEEEE---CCSEEE-ECCSSEEEETTSCEEECCEEE--------
T ss_pred CeEEEEEecCCCCCCEEEEEEEEcCCCCee--EEEEEEEee---cccccc-CCCCcccccCCCeEEEEEEec--------
Confidence 467899999999999999999999875321 112222222 345554 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--E
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA--S 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~--~ 225 (516)
+.|.+.+.|++++..+......++... ....|.|.+++.+|+|.|+|.+.|..+.... .
T Consensus 126 ------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 186 (291)
T 1qz1_A 126 ------------------SSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKD 186 (291)
T ss_dssp ------------------CSSCCEEEEEETTSCSSTTCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred ------------------cCCCCEEEEEECCEEcccCCCceEEEc-cCCcEEEccCccccCeEEEEEEEecCCCceeeEE
Confidence 899999999999987754332222211 2347999999999999999999987644322 2
Q ss_pred EEeece---ee------eeccccCCceEEEEEEEEccCCCCCceeccccccc----ce---EEEEEecceeeEEEccCCC
Q psy7039 226 AHVTGT---EF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG----KR---IKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 226 ~~~~~~---~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~----~~---~~~~~~~~~~~l~i~~l~~ 289 (516)
..+... .+ ....+..|..+.|.|.+ .|.|.|.+.|.+... .. ...........|.|.++..
T Consensus 187 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~---~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~ 263 (291)
T 1qz1_A 187 IQVIVNVPPTVQARQSIVNATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDK 263 (291)
T ss_dssp EEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCG
T ss_pred EEEEEecCCcccccccccccccccCceEEEEEEE---EEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecCh
Confidence 221111 11 12356789999999998 788999999965211 10 1223344567899999999
Q ss_pred CCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 290 KDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+|+|.|+|.|.|..|.....+.|.|..
T Consensus 264 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 264 NDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999999999988888888764
No 77
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=172.27 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=149.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 58 ~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~--~~~~l~v~---~~~~~~-~~~~~~~v~~G~~v~l~C~~~-------- 123 (291)
T 2wim_A 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQE--ATVVLEIY---QKLTFR-EVVSPQEFKQGEDAEVVCRVS-------- 123 (291)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSCEEE--EEEEEEEE---CCCBCC-SCCCSEEEETTSCEEECCCCB--------
T ss_pred CEEEEEEccCCcccCEEEEEEEecccCceEE--EEEEEEec---CCcceE-eCCCChhhcCCCCEEEEEEEc--------
Confidence 3568999999999999999999998765321 12222222 244444 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.. ..++.+. ....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 124 ------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~ 182 (291)
T 2wim_A 124 ------------------SSPAPAVSWLYHNEEVTTISDNRFAML---ANNNLQILNINKSDEGIYRCEGRVEARGEIDF 182 (291)
T ss_dssp ------------------CSSCCEEEEECC----CBCCCSSEEEC---TTSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred ------------------cCCCCEEEEEECCccccccCCceEEEc---cCCCEEEEecchhhCEEEEEEEEECCCCeeEE
Confidence 889999999999887764 3334332 23479999999999999999999887543322
Q ss_pred --EEeece---ee------eeccccCCceEEEEEEEEccCCCCCceecccccc-----cceEEEEEecceeeEEEccCCC
Q psy7039 226 --AHVTGT---EF------TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 226 --~~~~~~---~~------~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~l~i~~l~~ 289 (516)
..+... .+ ....+.+|..+.|.|.+ .|.|.|.+.|.+.. ... .........|.|.++..
T Consensus 183 ~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~v~W~~~g~~~~~~~~--~~~~~~~~~L~i~~~~~ 257 (291)
T 2wim_A 183 RDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA---SGSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIIN 257 (291)
T ss_dssp EEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC---CCBSCCEEEEEETTEECCCTTT--EEECSTTCEEEEESCCS
T ss_pred eeEEEEeccCCccccCcccccceecCCCeEEEEEEe---ecCCCCeEEEEECCEECcCCcc--EEEcCCccEEEEeeCCc
Confidence 111111 11 12356789999999998 78899999996521 112 22234567899999999
Q ss_pred CCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 290 KDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
+|+|.|+|.|.|..|.....+.+.|..++
T Consensus 258 ~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 258 SDGGPYVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp TTCEEEEEEEEETTEEEEEEEEEEC----
T ss_pred ccCEEEEEEEEECCCceeeeEEEEEEEec
Confidence 99999999999999999999988887654
No 78
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.83 E-value=1.5e-19 Score=161.69 Aligned_cols=188 Identities=23% Similarity=0.406 Sum_probs=137.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~ 190 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++.+.
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~ 57 (194)
T 2a38_A 5 APTFT-QPLQSVVVLEGSTATFEAHIS--------------------------GFPVPEVSWFRDGQVISTSTLPGVQIS 57 (194)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEESSSBCCTTTSTTCEEE
T ss_pred CCeEE-ccCCceEEECCCEEEEEEEEE--------------------------ecCCCEEEEEECCEEcccccCCceEEE
Confidence 55555 566778999999999999999 88999999999988776442 44444
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccce
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR 270 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~ 270 (516)
..+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 58 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~------------------------------------------------- 88 (194)
T 2a38_A 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQ------------------------------------------------- 88 (194)
T ss_dssp EETTEEEEEESSCCGGGCEEEEEEEEETTEE-------------------------------------------------
T ss_pred eCCCEEEEEECCCCcccCEEEEEEEEcCCce-------------------------------------------------
Confidence 4455556666666666666666666554332
Q ss_pred EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 271 ~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......+.|...+.+|.. .
T Consensus 89 -----------------------------------~~~~~~l~v~~~~~~p~~----~---------------------- 107 (194)
T 2a38_A 89 -----------------------------------ATSTAELLVKAETAPPNF----V---------------------- 107 (194)
T ss_dssp -----------------------------------EEEEEEEEEECCCEEEEE----E----------------------
T ss_pred -----------------------------------EeEEEEEEEccCCCCCEE----E----------------------
Confidence 222222222211111100 0
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+....|.|.++.. .|.|.|+|.
T Consensus 108 ---------~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~ 177 (194)
T 2a38_A 108 ---------QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP-EDSGTYSVN 177 (194)
T ss_dssp ---------ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECG-GGCEEEEEE
T ss_pred ---------eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCCh-hcCeEEEEE
Confidence 0112356788999999999999999999999999999888888887777777899999999 999999999
Q ss_pred EEcCCCceeEEEEEEEe
Q psy7039 431 LVNTVGSDSASCKVYVV 447 (516)
Q Consensus 431 a~n~~G~~s~s~~l~v~ 447 (516)
|.|..|....++.|.|.
T Consensus 178 a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 178 ATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEeCCCceEEEEEEEEC
Confidence 99999998888888773
No 79
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.83 E-value=6.7e-19 Score=169.95 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=156.1
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCC---------CCCccccCcccceEEecCCeEEEEEe
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN---------LAPRIDRSTLNDVKIKAGQSFSFDVK 137 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~---------~~p~~~~~~~~~~~v~~g~~~~l~C~ 137 (516)
+....|.|.+++..|.|.|+|.|.|..|... ...+.+.... .+|.+.........+.+|+.+.|.|.
T Consensus 55 ~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~----s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~ 130 (312)
T 2y23_A 55 GNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS----SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ 130 (312)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEESSSCCCCE----EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEE
T ss_pred CCEEEEEECcCCccCCEEEEEEEEeCCCcEE----EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEE
Confidence 3457999999999999999999999877432 1222221100 04444423334788999999999999
Q ss_pred eeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEE
Q psy7039 138 EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+.+ +.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.+
T Consensus 131 ~~~-------------------------~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 185 (312)
T 2y23_A 131 AEK-------------------------LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185 (312)
T ss_dssp ESC-------------------------CCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred EEe-------------------------CCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence 872 578999999999999988877776643 55677999999999999999999
Q ss_pred EcCCCceEEEEEeec----------------------eee---eeccccCCceEEEEEEEEccCCCCCc-eecccccc--
Q psy7039 216 ENNLGTATASAHVTG----------------------TEF---TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALI-- 267 (516)
Q Consensus 216 ~~~~g~~~~~~~~~~----------------------~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~-- 267 (516)
.+..+.......+.. ..+ ....+.+|..+.+.|.+ .|.|.| .+.|.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~---~~~p~~~~v~W~~~g~~ 262 (312)
T 2y23_A 186 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV---ANIKKETHIVWYKDERE 262 (312)
T ss_dssp ESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEE---ESCCSSCEEEEEETTEE
T ss_pred EeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEE---cCCCCCCEEEEeeCCEE
Confidence 875555444333210 111 12356789999999998 788887 99996521
Q ss_pred ---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 268 ---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 268 ---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
..+.. .......|.|.++..+|+|.|+|.|.|..|....++.|.+
T Consensus 263 ~~~~~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 263 ISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp EEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred CCCCCcEE--EECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence 11111 1244579999999999999999999999999888877765
No 80
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=173.73 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=148.6
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccC----CCCCccccCcccceEEecCCeEEEEEeeeeccc
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPK----NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~----~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~ 143 (516)
...|.|.+++. .|.|.|+|.|.|..|... ....+.+... ...|.+. ..+....+.+|+.+.|.|.+.
T Consensus 62 ~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~---~~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~---- 133 (304)
T 2yd9_A 62 GAVLRIQPLRTPRDENVYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAAS---- 133 (304)
T ss_dssp EEEEEECSCCTTTTCSEEEEEEECSSCEEC---CEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEE----
T ss_pred ceEEEEecccccCCCeEEEEEEECCCCeEE---EEEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECc----
Confidence 36899999997 999999999999887632 2222332211 1225555 455677899999999999999
Q ss_pred cccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+.... ...+. ......|.|.+++.+|+|.|+|.+.|..|..
T Consensus 134 ----------------------g~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 190 (304)
T 2yd9_A 134 ----------------------GNPDPEITWFKDFLPVDPSASNGRIK-QLRSGALQIESSEETDQGKYECVATNSAGVR 190 (304)
T ss_dssp ----------------------CSSCCEEEEEETTEECCGGGGTTSEE-ECTTSCEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred ----------------------cCCCCeEEEEECCEECcCCCCcceEE-eCCCeEEEEccCCcccCEEEEEEEEeCCCCE
Confidence 99999999999998886532 11221 1223489999999999999999999988865
Q ss_pred E---EEEEeec----eee----eeccccCCceEEEEEEEEccCCCCCceecccccccceE-EEEEecceeeEEEccCCCC
Q psy7039 223 T---ASAHVTG----TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI-KEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 223 ~---~~~~~~~----~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~l~i~~l~~~ 290 (516)
. ..+.+.. ..+ ....+.+|..+.|.|.+ .|.|.|.+.|.+....-. ..........|.|.++ .
T Consensus 191 ~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~---~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~ 265 (304)
T 2yd9_A 191 YSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA---VGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--K 265 (304)
T ss_dssp ECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEE---EEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--C
T ss_pred EeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEE---eeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--c
Confidence 4 2333321 111 12357789999999998 788999999965211000 0001123345667666 5
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
|+|.|+|.|.|..|.....+.|.|...+..
T Consensus 266 d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 295 (304)
T 2yd9_A 266 DSANYTCVAMSSLGVIEAVAQITVKSLPKA 295 (304)
T ss_dssp SCEEEEEEEEETTEEEEEEEEEC-------
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEecCccc
Confidence 899999999999999988888888776654
No 81
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=190.84 Aligned_cols=413 Identities=13% Similarity=0.106 Sum_probs=224.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeC-CCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP-GLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~y~~~~~a 89 (516)
..+|++|.+|.|......++.|+|.++. +. ..+.+|.|+++..++.+..+........++.|. +|.+...|.|+|.|
T Consensus 100 ~~pP~~P~nl~c~~~~~~~~~~~W~~~~-~~-~~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a 177 (589)
T 3l5h_A 100 GLPPEKPKNLSCIVNEGKKMRCEWDGGR-ET-HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177 (589)
T ss_dssp -CCCCCCEEEEEEEETTSCEEEEEECCS-CC-SSCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEE
T ss_pred cCCCCCCEeeEEEECCCceEEEEECCCC-cC-CcCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEE
Confidence 4689999999999988899999999974 33 458899999876555454454444445677777 79999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEe--cCCeEEEEEeeeeccccccCccccccccccCccceeecCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIK--AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE 167 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~--~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (516)
.|..|.+.+............+.+| ..+.+. ....-.+...|. +|....+.... |
T Consensus 178 ~n~~G~~~s~~~~~~~~~~~~p~pP-------~~~~~~~~~~~~~~v~l~W~-------~p~~~~~~~~~----Y----- 234 (589)
T 3l5h_A 178 ENALGKVTSDHINFDPVYKVKPNPP-------HNLSVINSEELSSILKLTWT-------NPSIKSVIILK----Y----- 234 (589)
T ss_dssp EESSCCBCCCCEEECGGGSEECCCC-------CSCEEECTTTCTTCEEEECC-------CCGGGGTSCEE----E-----
T ss_pred EeCCCCcccccEEEccccEEEcCCC-------ceEEEEecCCCCCeEEEEeC-------CCCCCCeeeEE----E-----
Confidence 9999876432211111111122233 333331 122222333333 11111111111 1
Q ss_pred CceeeEEeeCCeeeccCCceEE-eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeee-eccccCCceEE
Q psy7039 168 PFLNHGWSINGQVCQIGGRADV-QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFT-DNNVHEGKAYE 245 (516)
Q Consensus 168 p~~~i~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~-~~~l~~g~~~~ 245 (516)
.+.|...+..-- ..... ........+.|.++.+...+.+++.+.+..|....+.......+. ......+..-.
T Consensus 235 ---~v~~~~~~~~~w--~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~ 309 (589)
T 3l5h_A 235 ---NIQYRTKDASTW--SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSF 309 (589)
T ss_dssp ---EEEEEETTCSCC--BCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCE
T ss_pred ---EEEECCCCCCCc--EEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCCCCcE
Confidence 222222110000 00000 001234578889999999999999998877643221100000000 00111011111
Q ss_pred EEEE-EEccCCCCCceeccccc-------ccceEEEEE----------ecceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 246 YRVS-AVNAAGTEKPKISLDAL-------IGKRIKEFV----------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 246 ~~~~-~~~~~g~p~p~i~W~~~-------~~~~~~~~~----------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
++.. +....+.....+.|... ....+.+.. ......+.+ +.+...|.+++.|.|..|...
T Consensus 310 ~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~ 387 (589)
T 3l5h_A 310 WYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNLVGKSD 387 (589)
T ss_dssp EEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCCCBCCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCC
T ss_pred EEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCceeeccCCceEEE--EeCCCCEEEEEEEEeCCccCC
Confidence 1111 10112333445556420 011222222 111223333 668899999999999988765
Q ss_pred eeEEEEEecCC---CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 308 ADIEVVVVSKP---GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 308 ~~~~l~v~~~p---~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
.+. +.+...+ ..|...+.+... .+++.|+|.+|.. .+.+|.
T Consensus 388 ~s~-~~~~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~----~i~~Y~------------------------------ 431 (589)
T 3l5h_A 388 AAV-LTIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE----SVKKYI------------------------------ 431 (589)
T ss_dssp CCC-CCCCCTTCCCCSCCCSCEEEEC-SSSEEEECCCCSS----CCSCBC------------------------------
T ss_pred CeE-EEeecccccCCCCcceEEEEEC-CCeEEEEEECCCC----CccEEE------------------------------
Confidence 542 2222221 222222555544 6899999998864 455552
Q ss_pred CceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec---CCCCCCCCccccc
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD---KPSPPQGPLDVSD 461 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~---~p~~P~~~l~~~~ 461 (516)
|.|...+...................+.+.+|.+ ...|.|++.|.|..|.+..+. +.+.. .|.+| ..+.+..
T Consensus 432 --v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~~~~g~g~~~~-~~~~t~~~~P~~p-p~l~~~~ 506 (589)
T 3l5h_A 432 --LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE-SKCYLITVTPVYADGPGSPES-IKAYLKQAPPSKG-PTVRTKK 506 (589)
T ss_dssp --CEEEEECSSSCCCEEECCBCSSCCEEECCSCCCS-SSEEEEEECBEETTEECCCEE-EEEESSCCCCSSC-CCCCEEC
T ss_pred --EEEEECCCCCCCccCcEEeeCCcceEEehhcccc-CcEEEEEEEEEeCCcccCCEE-EEEEeccCCCCCC-CeEEEee
Confidence 2333222110000000000112234567789999 999999999999988765432 33333 35444 4688888
Q ss_pred ccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 462 ITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 462 ~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
++.+++.|+|++| ..+.++.|.+|.|+|+..+...
T Consensus 507 ~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~ 542 (589)
T 3l5h_A 507 VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE 542 (589)
T ss_dssp CCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSSCCC
T ss_pred cccceEEEEecCCCHHHcCccceeEEEEEEeCCCCe
Confidence 8999999999984 3456678999999999876544
No 82
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.81 E-value=2.2e-18 Score=156.75 Aligned_cols=138 Identities=25% Similarity=0.315 Sum_probs=95.6
Q ss_pred eEEEccC-CCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNS-VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l-~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.++ ...|+|.|+|.|.|..|.....+.|.|...+..+.....+.
T Consensus 64 ~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~------------------------------- 112 (212)
T 2yd6_A 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTID------------------------------- 112 (212)
T ss_dssp EEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEE-------------------------------
T ss_pred EEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceee-------------------------------
Confidence 4566666 36666666666666666655566666665433221100000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC---CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD---GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~---~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++..........|.|.++.. .|.|.|+|.|.|..|
T Consensus 113 ~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~G 191 (212)
T 2yd6_A 113 MGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAG 191 (212)
T ss_dssp ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTE
T ss_pred cCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCc-ccCEEEEEEEECCCC
Confidence 1223456789999999999999999999999999887543 455555556678999999999 999999999999999
Q ss_pred ce-eEEEEEEEecCC
Q psy7039 437 SD-SASCKVYVVDKP 450 (516)
Q Consensus 437 ~~-s~s~~l~v~~~p 450 (516)
.. +..+.|.|...+
T Consensus 192 ~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 192 TRYSAPANLYVRGTK 206 (212)
T ss_dssp EEECCCEEEEEEC--
T ss_pred ccccccccEEEEecc
Confidence 85 455777776543
No 83
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.81 E-value=6.5e-18 Score=153.61 Aligned_cols=195 Identities=20% Similarity=0.285 Sum_probs=133.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-cCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-IGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-~~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+. ...++.+.
T Consensus 5 ~pP~~~-~~p~~~~v~~G~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~ 57 (212)
T 2yd1_A 5 HPPEII-RKPQNQGVRVGGVASFYCAAR--------------------------GDPPPSIVWRKNGKKVSGTQSRYTVL 57 (212)
T ss_dssp CCCEEE-ECCCCEEEETTSCEEEEEEEE--------------------------CSSCCEEEEEETTEECCTTSTTEEEE
T ss_pred CCCEEE-cCCCceEEecCCEEEEEEEEc--------------------------cCCCCeEEEEECCEECCCCcceeEEE
Confidence 567777 567778999999999999999 89999999999988765 23333322
Q ss_pred e-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccc
Q psy7039 191 T-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269 (516)
Q Consensus 191 ~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~ 269 (516)
. .+...
T Consensus 58 ~~~~~~~------------------------------------------------------------------------- 64 (212)
T 2yd1_A 58 EQPGGIS------------------------------------------------------------------------- 64 (212)
T ss_dssp EETTTEE-------------------------------------------------------------------------
T ss_pred EcCCCeE-------------------------------------------------------------------------
Confidence 1 12223
Q ss_pred eEEEEEecceeeEEEccCCC-CCceEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCC
Q psy7039 270 RIKEFVTSTTASLNIKNSVR-KDSGIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347 (516)
Q Consensus 270 ~~~~~~~~~~~~l~i~~l~~-~d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~ 347 (516)
.|.|.++.. .|+|.|+|.|.|..|. ....+.|.|...+..+..+..+.
T Consensus 65 -----------~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~------------------- 114 (212)
T 2yd1_A 65 -----------ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT------------------- 114 (212)
T ss_dssp -----------EEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-------------------
T ss_pred -----------EEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-------------------
Confidence 445555555 5555555555555554 34455666665543322111100
Q ss_pred CceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceE
Q psy7039 348 TPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 348 ~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~ 426 (516)
..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... . ..|.|.++.. .|.|.
T Consensus 115 ------------~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~--~~L~i~~v~~-~d~G~ 177 (212)
T 2yd1_A 115 ------------QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--D--GFLQIENSRE-EDQGK 177 (212)
T ss_dssp ------------ECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE--T--TEEEECSCCG-GGCEE
T ss_pred ------------eCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc--C--CeEEEccCCh-hhCEE
Confidence 122346778999999999999999999999999988865 3444332 2 2799999999 99999
Q ss_pred EEEEEEcCCCceeEE-EEEEEecCCCCC
Q psy7039 427 YTIQLVNTVGSDSAS-CKVYVVDKPSPP 453 (516)
Q Consensus 427 y~c~a~n~~G~~s~s-~~l~v~~~p~~P 453 (516)
|+|.|.|..|..... +.|.|......+
T Consensus 178 Y~C~a~N~~G~~~s~~~~l~V~~~~~~~ 205 (212)
T 2yd1_A 178 YECVAENSMGTEHSKATNLYVKVRRVGT 205 (212)
T ss_dssp EEEEEEETTEEEECCCEEEEEEC---C-
T ss_pred EEEEeecCCCceeEEEEEEEEEeccccc
Confidence 999999999997654 899998766555
No 84
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.80 E-value=6e-17 Score=167.64 Aligned_cols=304 Identities=11% Similarity=0.101 Sum_probs=177.0
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCC-----------CCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAG-----------PGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFD 135 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g-----------~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~ 135 (516)
...+|+|.++++.|.+.|.|.+.+..+ ...... ...+.+. ....+|.+....+.......|+.+.|.
T Consensus 78 ~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~ 156 (512)
T 1zvo_C 78 NQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQ-GTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA 156 (512)
T ss_pred CEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccC-ceEEEecccCCcCCeEEeccCCcccccCCCeEEEE
Confidence 457899999999999999999987642 000111 1122222 222355543222211101246899999
Q ss_pred EeeeeccccccCccccccccccCccceeecCc-Cce-eeEEeeCCeeeccCCceEEee-cCC---eeEEEeccCCCCCCe
Q psy7039 136 VKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFL-NHGWSINGQVCQIGGRADVQT-TKS---ETVLDIPFCSRSDTG 209 (516)
Q Consensus 136 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~-~i~W~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g 209 (516)
|.+. +. |.+ .+.|++++............. .+. .+.|.|.....+ .|
T Consensus 157 C~~~--------------------------g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g 209 (512)
T 1zvo_C 157 CLIT--------------------------GYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QG 209 (512)
T ss_pred EEEE--------------------------eeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-Cc
Confidence 9999 54 654 899999654321000000111 111 246889888877 89
Q ss_pred eEEEEEEcCCCceEEEE-------------Eee--c--------------------------------------------
Q psy7039 210 HYSLTLENNLGTATASA-------------HVT--G-------------------------------------------- 230 (516)
Q Consensus 210 ~Y~c~~~~~~g~~~~~~-------------~~~--~-------------------------------------------- 230 (516)
.|+|.+.|..+...... .+. .
T Consensus 210 ~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~ 289 (512)
T 1zvo_C 210 EYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPE 289 (512)
T ss_pred eEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCccccc
Confidence 99999999887654433 110 0
Q ss_pred -------eee-----eeccccCCceEEEEEEEEccCCCCC--ceecccccccc---eEE--EEEe------cceeeEEEc
Q psy7039 231 -------TEF-----TDNNVHEGKAYEYRVSAVNAAGTEK--PKISLDALIGK---RIK--EFVT------STTASLNIK 285 (516)
Q Consensus 231 -------~~~-----~~~~l~~g~~~~~~~~~~~~~g~p~--p~i~W~~~~~~---~~~--~~~~------~~~~~l~i~ 285 (516)
... ....+..|+.+.|.|.+ .|..+ ..++|.+.... ... .... .....|.|.
T Consensus 290 ~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v---~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~ 366 (512)
T 1zvo_C 290 CPSHTQPLGVYLLTPAVQDLWLRDKATFTCFV---VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLP 366 (512)
T ss_pred CCCCCCCCEEEEECCChHHhccCCceEEEEEE---eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEc
Confidence 000 11224579999999998 55433 38999652211 100 0111 112468888
Q ss_pred cCCCCCceEEEEEEEecCCCcceeEEEEEec-C--CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVS-K--PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~-~--p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.....|.|.|+|.|.|..+... ...+.... . +.+|. +.+. ..
T Consensus 367 ~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~--v~~~--------------------------------~~ 411 (512)
T 1zvo_C 367 RSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLS--LNLL--------------------------------AS 411 (512)
T ss_pred hHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCE--EEEE--------------------------------cc
Confidence 8889999999999999877654 32332211 1 11110 0000 00
Q ss_pred ccEEEEcCCeEE-EEEEEeeecCC--ceEEEECCeecCCCCce--EEEEc-CC-----eEEEEEcCceecCCceEEEEEE
Q psy7039 363 RDMTVLAGEEFT-ITVPFSGRPKP--TPIWTVNGDEVSPDGRI--KFETS-EN-----QTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 363 ~~~~v~~g~~~~-l~C~~~g~p~~--~i~W~~~~~~l~~~~~~--~~~~~-~~-----~~~l~i~~~~~~~~~g~y~c~a 431 (516)
.. .|+.+. |.|.+.|.+++ .+.|.++|..+...... ..... ++ .+.|.|..... ++.|.|+|.|
T Consensus 412 ~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~-~~~g~YtC~v 486 (512)
T 1zvo_C 412 SD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS-PQPATYTCVV 486 (512)
T ss_pred Cc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhc-CCCCeEEEEE
Confidence 11 688889 99999986554 68999999887543211 11111 12 13566766666 7799999999
Q ss_pred EcCCCceeEEE
Q psy7039 432 VNTVGSDSASC 442 (516)
Q Consensus 432 ~n~~G~~s~s~ 442 (516)
.|.........
T Consensus 487 ~h~~l~~~~~~ 497 (512)
T 1zvo_C 487 SHEDSRTLLNA 497 (512)
T ss_pred EecCCCCceEE
Confidence 99876644333
No 85
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.80 E-value=2.3e-18 Score=175.24 Aligned_cols=274 Identities=11% Similarity=0.076 Sum_probs=164.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 59 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATS--------------------------GFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTY 59 (444)
T ss_dssp EECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEE
T ss_pred cCCCeEEcCCCCEEEEEEcC--------------------------CCccCCceEEEEEeCCCCCcEEEEEEecCCCcee
Confidence 34557899999999999998 543 456777763 22110
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----ee-ee---eccccCCc
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TE-FT---DNNVHEGK 242 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~-~~---~~~l~~g~ 242 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. .. +. ...+.+|.
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~ 139 (444)
T 1igt_B 60 YPDTVKGRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGS 139 (444)
T ss_dssp CCGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSS
T ss_pred cCcccCCceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCC
Confidence 1246665432 356799999999999999999999875431 11222221 11 11 12246899
Q ss_pred eEEEEEEEEccCC-CCCc-eecccccccce--E---EEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 243 AYEYRVSAVNAAG-TEKP-KISLDALIGKR--I---KEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 243 ~~~~~~~~~~~~g-~p~p-~i~W~~~~~~~--~---~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
.+.+.|.+ .| .|.| .+.|.+..... . .... ......|.|.++..+| |.|+|.|.|..|.......+
T Consensus 140 ~v~L~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i 215 (444)
T 1igt_B 140 SVTLGCLV---KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI 215 (444)
T ss_dssp CEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEEC
T ss_pred cEEEEEEE---cceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEe
Confidence 99999998 45 3666 99997632210 0 0000 0112468899999889 99999999998875433333
Q ss_pred EEecCCCCCCCCcee-eeccCCeeEEEecCCCCCCCCceeeccccccccccccEE-EEcCCeEEEEEEEeeec----CCc
Q psy7039 313 VVVSKPGPPTGPIDY-TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT-VLAGEEFTITVPFSGRP----KPT 386 (516)
Q Consensus 313 ~v~~~p~~p~~p~~~-~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~-v~~g~~~~l~C~~~g~p----~~~ 386 (516)
.+.........+... .........+...+| .... +..|+.+.|.|.+.|.+ .+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p--------------------~~~~~~~~G~~~~L~C~~~g~~~~p~~~~ 275 (444)
T 1igt_B 216 EPRGPTIKPCPPCKCPAPNLLGGPSVFIFPP--------------------KIKDVLMISLSPIVTCVVVDVSEDDPDVQ 275 (444)
T ss_dssp CCCCCSCCCCCCCSCCCSCCCCCCEEEEECC--------------------CHHHHHCTTSCCEEEEEEEEECTTCCCCE
T ss_pred ccCCCCcccCCccccCCcccCCCceEEecCC--------------------chhheeecCCCcEEEEEEeecccCCCCeE
Confidence 221000000000000 000000001111111 1111 46899999999999984 358
Q ss_pred eEEEECCeecCCCCce--EEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 387 PIWTVNGDEVSPDGRI--KFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 387 i~W~~~~~~l~~~~~~--~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.|++++..+...... .....+ ....|.|.++.. .|.|.|+|.|.|..|.......+
T Consensus 276 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~~~~~~~v 337 (444)
T 1igt_B 276 ISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW-MSGKEFKCKVNNKDLPAPIERTI 337 (444)
T ss_dssp EEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHH-HTTCEEEEEEECTTCSSCEEEEE
T ss_pred EEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHh-ccCCcEEEEEEcCCCCCceEEEE
Confidence 9999999876433211 111111 235799999999 99999999999999876444443
No 86
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.80 E-value=5.2e-18 Score=176.68 Aligned_cols=95 Identities=33% Similarity=0.591 Sum_probs=87.4
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|+||..+.+++++.++|.|+|.+|..|||++|++|.|++++.++ .|..+... ..+.+++.+|.++..|.|||+|.
T Consensus 8 ~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~--~~t~~~V~~L~~g~~Y~FRV~A~ 85 (573)
T 3uto_A 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAE 85 (573)
T ss_dssp CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEE--SSSEEEECCCCTTCEEEEEEEEE
T ss_pred CCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccc--cCCEEEeCCCCCCCcEeEEEEEE
Confidence 4799999999999999999999999999999999999999999877 99998765 67899999999999999999999
Q ss_pred cCCCCCCCCCCCcceEec
Q psy7039 91 NAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~ 108 (516)
|..|.+.++..+..+...
T Consensus 86 N~~G~s~PS~~s~~v~~~ 103 (573)
T 3uto_A 86 NKHGQSKPCEPTAPVLIP 103 (573)
T ss_dssp ETTEECCCCCCCCCEECC
T ss_pred cCceEcCCcCCCCCEEcC
Confidence 999999999888777654
No 87
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.80 E-value=5.6e-18 Score=151.08 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=68.2
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEEC--CeecCC-----CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVN--GDEVSP-----DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~--~~~l~~-----~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+..|+.+.|.|.+.|.|.+.+.|+++ +..+.. ..++..........|.|.++.. .|.|.|+|.|.|..|.
T Consensus 104 ~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~ 182 (192)
T 2va4_A 104 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL-SDSGRYDCEAASRIGG 182 (192)
T ss_dssp EEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCG-GGCEEEEEEEECSSCE
T ss_pred ceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCc-ccCEEEEEEEEecCCc
Confidence 3556799999999999999999999998 544432 3456666666678999999999 9999999999999999
Q ss_pred eeEEEEEEEe
Q psy7039 438 DSASCKVYVV 447 (516)
Q Consensus 438 ~s~s~~l~v~ 447 (516)
...++.|.|.
T Consensus 183 ~~~~~~l~V~ 192 (192)
T 2va4_A 183 HQKSMYLDIE 192 (192)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEEeC
Confidence 8888888763
No 88
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=174.96 Aligned_cols=219 Identities=10% Similarity=0.052 Sum_probs=146.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|+|.|..+.... ....+.... .|.+. ...+..+....|+.+.|.|...+
T Consensus 72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~--~~~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~l~C~~~~------ 140 (308)
T 4fom_A 72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQ--SSTTVTVLV---EPTVSLIKGPDSLIDGGNETVAAICIAAT------ 140 (308)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEETTTEEEE--EEEEEEEEB---CCEEEEEECSSCCCTTCSCEEEEEEEEEE------
T ss_pred CceEEEEccCCHHHCEEEEEEEeeCCCccee--eeeEEEeee---ccccccccccceeEEcCCceEEEEEEecC------
Confidence 3467999999999999999999885432211 112222221 12211 13344455667899999997642
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe-ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ-TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+......... .....+.|.|.++..+|.|.|+|.+.|..+.....
T Consensus 141 -------------------g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 201 (308)
T 4fom_A 141 -------------------GKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR 201 (308)
T ss_dssp -------------------EBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred -------------------CcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE
Confidence 7899999999998776532111000 01123579999999999999999999987665433
Q ss_pred --EEeecee---e-----eeccccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 --AHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 --~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+.. + ....+..|+.+.|.|.+ .|.|+| .+.|.+................+.|.+++.+|+|.
T Consensus 202 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 278 (308)
T 4fom_A 202 YSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNA---DANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGV 278 (308)
T ss_dssp EEEECCCCEEEEECCBCCCSCEETTCCSCEEECCE---EEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSE
T ss_pred EeEEEEEecCCeeEEcccceeeeeccccEEEEEEE---ecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEE
Confidence 2222211 1 22334567889999988 788888 59997633221111122345567788999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|+|.|.|..|..+.++.|.|..+|.
T Consensus 279 Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 279 YICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp EEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 9999999999998888888887664
No 89
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.79 E-value=3.1e-19 Score=174.32 Aligned_cols=222 Identities=17% Similarity=0.223 Sum_probs=131.6
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccC-----------------CCCCcccc---CcccceEEe
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK-----------------NLAPRIDR---STLNDVKIK 127 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~-----------------~~~p~~~~---~~~~~~~v~ 127 (516)
....|.|.+++..|.|.|+|.|.|. |... ....+.+..... ..+|.+.. .......+.
T Consensus 59 ~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~ 136 (334)
T 1ry7_B 59 GPQRLQVLNASHEDSGAYSCRQRLT-QRVL-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136 (334)
T ss_dssp --------------------------------------------------------------CCCCSCCTTCCCCEEEEE
T ss_pred ccceEEEeecccccCEEEEEEEEeC-CeEE-EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEec
Confidence 3568999999999999999999987 4322 111222211110 01344431 112346788
Q ss_pred cCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEeecCCeeEEEeccCCCC
Q psy7039 128 AGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQTTKSETVLDIPFCSRS 206 (516)
Q Consensus 128 ~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~ 206 (516)
+|+.+.|.|.+. +.|.+.+.|++++..+....+. ..........|.|.+++.+
T Consensus 137 ~g~~v~l~C~~~--------------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 190 (334)
T 1ry7_B 137 AANTVRFRCPAA--------------------------GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 190 (334)
T ss_dssp TTCCEEEECCCC--------------------------CSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGG
T ss_pred CCCcEEEEEEcc--------------------------CCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcc
Confidence 999999999999 8999999999999888765443 1222345668999999999
Q ss_pred CCeeEEEEEEcCCCceEEEEEeecee-------e-----eeccccCCceEEEEEEEEccCCCCCceeccccc---ccceE
Q psy7039 207 DTGHYSLTLENNLGTATASAHVTGTE-------F-----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL---IGKRI 271 (516)
Q Consensus 207 d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~---~~~~~ 271 (516)
|+|.|+|.+.|..|.......+.+.. + ....+..|..+.|.|.+ .|.|.|.+.|.+. .+..+
T Consensus 191 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~---~g~p~p~v~W~~~~~~~g~~~ 267 (334)
T 1ry7_B 191 DRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKV 267 (334)
T ss_dssp GCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC---BCSSCEEEEEEECCCGGGCSB
T ss_pred cCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE---ecCCCCeEEEEECCcCCCccc
Confidence 99999999999988776655443322 1 12345679999999988 7899999999652 11111
Q ss_pred --------EEEE-------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 272 --------KEFV-------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 272 --------~~~~-------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.+.. ......|.|.++..+|+|.|+|.|.|..|....++.|.|...|.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 331 (334)
T 1ry7_B 268 GPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE 331 (334)
T ss_dssp CTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred cCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence 0000 111247999999999999999999999999999999999877654
No 90
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.9e-18 Score=161.27 Aligned_cols=237 Identities=12% Similarity=0.019 Sum_probs=164.7
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
.....+.|.+... + .+.|...+. .+.. ......|.|.+++..|.|.|+|.|.| |. ....
T Consensus 25 ~~G~~v~l~C~~~---~-------~i~W~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~----~~~~ 84 (290)
T 2o26_X 25 EAGDTLSLTCIDP---D-------FVRWTFKTYFNEMV----ENKKNEWIQEKAEATRTGTYTCSNSN--GL----TSSI 84 (290)
T ss_dssp ETTSCEEEEEECT---T-------EEEEEEECSSSCEE----EECSSEEEETTCCGGGCEEEEEEESS--SC----EEEE
T ss_pred cCCCcEEEEECCC---C-------cEEEecCCcceeee----cCCCceEEEeccCHHhCeEEEEEeeC--Cc----cEEE
Confidence 4567788888763 1 455655554 2111 12348999999999999999999988 43 1223
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEe-eCCeee
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWS-INGQVC 181 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~-~~~~~~ 181 (516)
.+.+. .+|.+. ..+..+.+.+|+.+.|.|.+. + |. +.+.|+ +++..+
T Consensus 85 ~l~V~---~~~~~~-~~~~~~~~~~g~~v~l~C~~~--------------------------~-p~~~~v~W~~~~g~~l 133 (290)
T 2o26_X 85 YVFVR---DPAKLF-LVGLPLFGKEDSDALVRCPLT--------------------------D-PQVSQYSLIECDGKSL 133 (290)
T ss_dssp EEEEE---CSSCCB-CCCCCEEEETTSCEEECCCBS--------------------------C-CSCEEEEEEETTSCCC
T ss_pred EEEEe---CCCccc-ccccceEEecCCeEEEeCcCC--------------------------C-CCCceEEEEeCCCcCC
Confidence 33333 234333 455668888999999999998 6 66 999994 688777
Q ss_pred ccCCceEEeecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEE---EEEee-----ceee----eeccccCCceEEEEE
Q psy7039 182 QIGGRADVQTTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATA---SAHVT-----GTEF----TDNNVHEGKAYEYRV 248 (516)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~---~~~~~-----~~~~----~~~~l~~g~~~~~~~ 248 (516)
....++.+... ..|.|.+++.+|+| .|+|.+.|..+.... .+.+. ...+ ....+..|+.+.|.|
T Consensus 134 ~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C 210 (290)
T 2o26_X 134 PTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVC 210 (290)
T ss_dssp CTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEE
T ss_pred CCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEE
Confidence 66655555432 47999999999999 999999997554322 22221 1112 223577899999999
Q ss_pred EEEccCCCCCce-ecccccccce---------EEEE---EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 249 SAVNAAGTEKPK-ISLDALIGKR---------IKEF---VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 249 ~~~~~~g~p~p~-i~W~~~~~~~---------~~~~---~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+ .|.|.|. +.|.+..... .... .......|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 211 ~~---~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 287 (290)
T 2o26_X 211 TI---KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287 (290)
T ss_dssp EE---EESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC-
T ss_pred EE---ecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEE
Confidence 99 5888886 9997633221 0111 12346789999999999999999999999999888888877
Q ss_pred cCC
Q psy7039 316 SKP 318 (516)
Q Consensus 316 ~~p 318 (516)
.+|
T Consensus 288 ~~P 290 (290)
T 2o26_X 288 EKG 290 (290)
T ss_dssp ---
T ss_pred eCC
Confidence 654
No 91
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.79 E-value=1.5e-17 Score=148.41 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=71.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC---CCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCc
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS---PDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~---~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~ 437 (516)
...+..|+.+.|.|.+.|.|.+.+.|++ ++..+. .+.++.+........|.|.++. . .|.|.|+|.|.|..|.
T Consensus 101 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-~d~G~Y~C~a~N~~g~ 179 (190)
T 2wv3_A 101 SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT-EDPGEYECNATNSIGS 179 (190)
T ss_dssp EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTT-TSCEEEEEEEECSSCE
T ss_pred cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEecccc-CCCEEEEEEEEecCCc
Confidence 4568899999999999999999999999 666553 4567777777777899999999 8 9999999999999999
Q ss_pred eeEEEEEEEe
Q psy7039 438 DSASCKVYVV 447 (516)
Q Consensus 438 ~s~s~~l~v~ 447 (516)
...++.|.|.
T Consensus 180 ~~~~~~l~V~ 189 (190)
T 2wv3_A 180 ASVSTVLRVR 189 (190)
T ss_dssp EEEEEEEEEE
T ss_pred ceeEEEEEEE
Confidence 8888888775
No 92
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.78 E-value=2.4e-18 Score=168.93 Aligned_cols=266 Identities=13% Similarity=0.105 Sum_probs=153.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +. +.+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 59 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKAS--------------------------GYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFK 59 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEE--------------------------SSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEE
T ss_pred CCCCeEEeCCCcEEEEEEcC--------------------------CccccccEEEEEEECCCCCcEEEEEEecCCCceE
Confidence 34457899999999999998 54 3567888875 22220
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE--EEEEeec-----ee-e---eeccccCCceEE
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT--ASAHVTG-----TE-F---TDNNVHEGKAYE 245 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~--~~~~~~~-----~~-~---~~~~l~~g~~~~ 245 (516)
...|+.+..+ +...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. .. + ....+.+|..+.
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~ 139 (344)
T 1za6_B 60 YNERFKGKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAA 139 (344)
T ss_dssp ECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEE
T ss_pred ECcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEE
Confidence 1356665543 4567999999999999999999988543221 1222221 01 1 122456899999
Q ss_pred EEEEEEccCCC-CC-ceecccccccce--EE---EEEe----cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 246 YRVSAVNAAGT-EK-PKISLDALIGKR--IK---EFVT----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 246 ~~~~~~~~~g~-p~-p~i~W~~~~~~~--~~---~~~~----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
+.|.+ .|. |. +.+.|.+..... .. .... .....|.|.++..+| |.|+|.|.|..+.......+.+
T Consensus 140 L~C~~---~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~ 215 (344)
T 1za6_B 140 LGCLV---KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 215 (344)
T ss_dssp EEEEE---EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECC
T ss_pred EEEEE---eeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecc
Confidence 99998 454 54 799997632210 00 0000 012378898888877 9999999998876433322221
Q ss_pred ecC-------CCCCCCCcee--eeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-
Q psy7039 315 VSK-------PGPPTGPIDY--TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK- 384 (516)
Q Consensus 315 ~~~-------p~~p~~p~~~--~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~- 384 (516)
... +.+....+.. .....-.+.+. ++ .. ....|..+.|.|.+.|.++
T Consensus 216 ~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~--~~--------------------~~-~~~~~~~~~L~C~~~g~~P~ 272 (344)
T 1za6_B 216 KSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTL--PP--------------------SR-DELTKNQVSLTCLVKGFYPS 272 (344)
T ss_dssp CCC--------------------CCBCCEEEEE--CC--------------------CG-GGGGSSSEEEEEEEEEEBSS
T ss_pred cccccccccCCCCCCccccccCCCCcCCEEEEe--CC--------------------Ch-HhccCCcEEEEEEEeeEECC
Confidence 000 0000000000 00000000000 00 00 0124566999999999644
Q ss_pred -CceEEEECCeecCCCCceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 385 -PTPIWTVNGDEVSPDGRIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 385 -~~i~W~~~~~~l~~~~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|+++|..+............+ ...|.|..... +|.|.|+|.|.|......
T Consensus 273 ~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~YtC~a~~~~l~~~ 332 (344)
T 1za6_B 273 DIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRW-QQGNVFSCSVMHEALHNH 332 (344)
T ss_dssp CCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHH-HTTCEEEEEEECTTSTTS
T ss_pred CeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHc-cCCCeEEEEEEcCCCCCC
Confidence 4899999998775322111111111 13466766666 679999999999876543
No 93
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.77 E-value=5.8e-18 Score=151.06 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=68.3
Q ss_pred cEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASC 442 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~ 442 (516)
...+..|+.+.|.|.+.|.|.+.+.|++++..+....++..... ..|.|.++.. .|.|.|+|.|.|..|.. +..+
T Consensus 109 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~s~~~ 184 (192)
T 2iep_A 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQK-EDAGQYRCVAKNSLGTAYSKLV 184 (192)
T ss_dssp CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTT---SCEEESSCCG-GGCEEEEEEEEETTEEEECCCE
T ss_pred ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecC---CcEEEecCCh-hhCEEEEEEEEcCCCcEEEEEE
Confidence 35678999999999999999999999999998876666554322 2699999999 99999999999999986 5568
Q ss_pred EEEEecCC
Q psy7039 443 KVYVVDKP 450 (516)
Q Consensus 443 ~l~v~~~p 450 (516)
.|.|..+|
T Consensus 185 ~l~V~~pp 192 (192)
T 2iep_A 185 KLEVEVFA 192 (192)
T ss_dssp EEEEEC--
T ss_pred EEEEEeCC
Confidence 88887543
No 94
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.77 E-value=1.6e-18 Score=167.71 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=147.1
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+|.|.+++..|.|.|+|++.+..+.... ....+. ...+|.+. .......+..|+.+.+.|...+
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~--~~~~l~---v~~~P~~~-~~~~~~~~~~~~~~~~~C~~~~-------- 143 (313)
T 4fqp_A 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRS--VDIWLR---VLAKPQNT-AEVQKVQLTGEPVPMARCVSTG-------- 143 (313)
T ss_dssp BCCEEECSCCGGGCEEEEEEEECSSSCEEE--EEEEEC---CBBCCEEE-EEECCBCCCSSCEEEEEEEEEE--------
T ss_pred ceEEEECcCChhhCEEEEEEEeeccCccee--eeeeee---eccCCcce-ecccceEeecCceEEEEEEccC--------
Confidence 467999999999999999998653321111 111121 22345444 3445566778889999998763
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCC---eeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS---ETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+....+......+. .+.|.|.+...+|.|.|+|.+.|..+.....
T Consensus 144 -----------------~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 206 (313)
T 4fqp_A 144 -----------------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQL 206 (313)
T ss_dssp -----------------EBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEE
T ss_pred -----------------ccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccce
Confidence 78999999999988775433322222222 2468999999999999999999976654333
Q ss_pred E--Eeece---ee-----eeccccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceE
Q psy7039 226 A--HVTGT---EF-----TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 226 ~--~~~~~---~~-----~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
. .+.+. .+ ....+..|+.+.|.|.+ .|.|.| .+.|.+....... ........|.|.++...|+|.
T Consensus 207 ~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~~v~W~~~~~~l~~-~~~~~~~~L~i~~v~~~d~G~ 282 (313)
T 4fqp_A 207 LTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA---RSNPEPTGYNWSTTMGPLPP-FAVAQGAQLLIRPVDKPINTT 282 (313)
T ss_dssp EEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE---EEESCCCEEEEEETTBSCCT-TEEEETTEEEECCCSSCCEEE
T ss_pred eeeecccccCCccccccccceeecCCCeEEEEEEe---cCCCCCcEEEEEECCEECCC-ceEEeCCEEEECcCChhhCEE
Confidence 2 22211 11 22335568899999998 788888 5999763221100 011234589999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCC
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
|+|.|.|..|..+..+.|.|...|+
T Consensus 283 Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 283 LICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCC-
T ss_pred EEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 9999999999988888888877643
No 95
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.77 E-value=2.2e-18 Score=167.58 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=152.3
Q ss_pred CeEEEEEeeeeccccccCccccccccccCccceeecCc-C-ceeeEEeeCCeeeccCCce--EEeecCC---eeEEEecc
Q psy7039 130 QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-P-FLNHGWSINGQVCQIGGRA--DVQTTKS---ETVLDIPF 202 (516)
Q Consensus 130 ~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-~~~i~W~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~ 202 (516)
+.+.|.|.+. +. | .+.|+|++++..+...... .....+. .+.|.|.+
T Consensus 25 ~~v~L~C~~~--------------------------g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~ 78 (323)
T 2wqr_A 25 PTIQLLCLVS--------------------------GYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQ 78 (323)
T ss_dssp SEEEEEEEEE--------------------------EECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEH
T ss_pred CcEEEEEEEe--------------------------CeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcH
Confidence 6999999998 64 3 5799999999888654321 1111221 24678888
Q ss_pred CCCCCCeeEEEEEEcCCCceEEEEEe-------eceee----eeccccCCceEEEEEEEEccCC-CCCc---eecccccc
Q psy7039 203 CSRSDTGHYSLTLENNLGTATASAHV-------TGTEF----TDNNVHEGKAYEYRVSAVNAAG-TEKP---KISLDALI 267 (516)
Q Consensus 203 ~~~~d~g~Y~c~~~~~~g~~~~~~~~-------~~~~~----~~~~l~~g~~~~~~~~~~~~~g-~p~p---~i~W~~~~ 267 (516)
...+|.|.|+|.+.|..+.....+.. ....+ ....+..|+.+.|.|.+ .| .|.| .+.|.+..
T Consensus 79 ~~~~d~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~---~g~~P~p~~~~i~W~k~~ 155 (323)
T 2wqr_A 79 KHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLV---VDLAPSKGTVQLTWSRAS 155 (323)
T ss_dssp HHHHTTCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEE---EEECCCSSCCEEEEEETT
T ss_pred HHcCCCCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEE---eccCCCCCceEEEEEECC
Confidence 88889999999999987765544321 00111 11236679999999998 45 3555 89996522
Q ss_pred cceEE----EE--E-e---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC-ceeeeccCCeeE
Q psy7039 268 GKRIK----EF--V-T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP-IDYTTVTPESVS 336 (516)
Q Consensus 268 ~~~~~----~~--~-~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p-~~~~~~~~~~~~ 336 (516)
+.... .. . . .....|.|.++..+|+|.|+|.|.|..+.... .+.+.........| +.+..
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~------- 226 (323)
T 2wqr_A 156 GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFA------- 226 (323)
T ss_dssp CCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE--EEEECCCCSCCBCCEEEEEE-------
T ss_pred CcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCe--eeEEEccCCCCCCCEEEEeC-------
Confidence 11110 00 0 0 12347999999999999999999998644322 33332111010111 11100
Q ss_pred EEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-C-ceEEEECCeecCCCCceEE----EEcC--
Q psy7039 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIKF----ETSE-- 408 (516)
Q Consensus 337 l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~~----~~~~-- 408 (516)
.......|+.+.|.|.+.|.++ + .|.|+++|..+.... +.. ...+
T Consensus 227 --------------------------~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~ 279 (323)
T 2wqr_A 227 --------------------------TPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSG 279 (323)
T ss_dssp --------------------------CCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSS
T ss_pred --------------------------CChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCc
Confidence 0000112899999999998544 3 799999998875431 111 0111
Q ss_pred --CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 409 --NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 409 --~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+.|.|..+.. .|.|.|+|.|.|..+.
T Consensus 280 ~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 280 FFVFSRLEVTRAEW-EQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEEHHHH-HHCCCEEEEEECTTST
T ss_pred EEEEEEEEEChHHc-cCCCEEEEEEEeCCCC
Confidence 124689999998 9999999999999876
No 96
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.77 E-value=9.4e-17 Score=164.73 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=158.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC------------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~------------- 181 (516)
..+..+.+.+|+.+.|.|.+. +.+ ...+.|++.. ...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~ 59 (475)
T 1iga_A 6 EQSGAEVKKPGASVKVSCKAS--------------------------GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNT 59 (475)
T ss_pred ccCCcEEEeCCCCEEEEEEec--------------------------CCCCCCceEEEEEeCCCCCcEEEEEEecCCCce
Confidence 345668899999999999998 432 4556676632 110
Q ss_pred ----ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCc--------eEEEEEeec-----eeee---ecccc
Q psy7039 182 ----QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGT--------ATASAHVTG-----TEFT---DNNVH 239 (516)
Q Consensus 182 ----~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--------~~~~~~~~~-----~~~~---~~~l~ 239 (516)
....|+.+... +...+|.|.+++.+|+|.|.|.+.+..|. ....+.+.. ..+. ...+.
T Consensus 60 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~ 139 (475)
T 1iga_A 60 KYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQ 139 (475)
T ss_pred ecCcccCCceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccC
Confidence 01245555433 34578999999999999999999987642 111222221 0111 11235
Q ss_pred CCceEEEEEEEEccCCC-CC-c-eecccccccce-EEE--EEe--c-----ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 240 EGKAYEYRVSAVNAAGT-EK-P-KISLDALIGKR-IKE--FVT--S-----TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~-p~-p-~i~W~~~~~~~-~~~--~~~--~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
+|..+.|.|.+ .|. |. | .+.|.+..... ... ... . ....|.|..+...|.|.|+|.|.|..+..
T Consensus 140 ~g~~v~L~C~~---~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 216 (475)
T 1iga_A 140 PDGNVVIACLV---QGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 216 (475)
T ss_pred CCCeEEEEEEE---eeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence 79999999998 565 55 4 99997632110 000 000 1 12357888888899999999999988642
Q ss_pred -ceeEEEEEecCCCCCCCCceee-eccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 307 -MADIEVVVVSKPGPPTGPIDYT-TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 307 -~~~~~l~v~~~p~~p~~p~~~~-~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
...+.+.|...+.......... ........+.-.+ +....+..|+.+.|.|.+.|.++
T Consensus 217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~--------------------p~~~~~~~G~~v~L~C~~~g~~p 276 (475)
T 1iga_A 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHR--------------------PALEDLLLGSEANLTCTLTGLRD 276 (475)
T ss_pred eeeeEecccccCcccccccccccCCCCCCCcEEEEcC--------------------CChHHhccCCceEEEEEEEcccC
Confidence 2222322211110000000000 0000000000001 11123578999999999998754
Q ss_pred ---CceEEEECCeecCCCCce-EEEE-cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 385 ---PTPIWTVNGDEVSPDGRI-KFET-SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 385 ---~~i~W~~~~~~l~~~~~~-~~~~-~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
+.|.| ++..+...... .... .+ ....|.|.++.. .|.|.|+|.|.|..|.......|.
T Consensus 277 ~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~-~d~G~Y~C~a~n~~~~~~~~~~v~ 342 (475)
T 1iga_A 277 ASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW-NHGKTFTCTAAYPESKTPLTATLS 342 (475)
T ss_pred CCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHh-ccCCcEEEEEEcCCCCCceEEEee
Confidence 58999 43333211111 0000 11 234799999999 999999999999999865555553
No 97
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.76 E-value=3e-17 Score=156.56 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=145.8
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
.....|.|.+++..|.|.|+|.|.|..|.. .....+.+.. +|......+..+.+.+|+.+.|.|.+.
T Consensus 48 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~L~C~~~------- 114 (289)
T 3ejj_X 48 SPGSTLTTRNATFKNTGTYRCTELEDPMAG---STTIHLYVKD---PAHSWNLLAQEVTVVEGQEAVLPCLIT------- 114 (289)
T ss_dssp SSCCEEEESSCCGGGCEEEEEECCC--------CEEEEEEECC---SSCSEEESCSEEEEETTSCEEECEEES-------
T ss_pred CCccEEEEeeeccccCEEEEEEEeccCCcc---eeEEEEEEeC---CCcceecccceEEEecCCceEeEEEcc-------
Confidence 356889999999999999999998876642 2233344332 222111445778899999999999999
Q ss_pred CccccccccccCccceeecCcCcee-eEEee-CCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc-CCCceE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLN-HGWSI-NGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN-NLGTAT 223 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~-~~g~~~ 223 (516)
+.+.+. +.|++ ++..+....++.+... ..|.|.+++.+|+|.|+|.+.+ ..+...
T Consensus 115 -------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~ 172 (289)
T 3ejj_X 115 -------------------DPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTS 172 (289)
T ss_dssp -------------------CGGGGGSEEEEEGGGEECCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred -------------------CCCcceEEEEEecCCeecCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCcccc
Confidence 766654 99986 6666665666655432 4699999999999999999994 333322
Q ss_pred EEEEeece-------ee----eeccccCCceEEEEEEEEccCC-CCCceeccccccc---ceEEEE----EecceeeEEE
Q psy7039 224 ASAHVTGT-------EF----TDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIG---KRIKEF----VTSTTASLNI 284 (516)
Q Consensus 224 ~~~~~~~~-------~~----~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~---~~~~~~----~~~~~~~l~i 284 (516)
....+.+. .+ ....+.+|..+.+.|.+ .| .|.|.+.|.+... ...... .......|.|
T Consensus 173 ~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~---~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (289)
T 3ejj_X 173 TGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA---TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSL 249 (289)
T ss_dssp CCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEE---EESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEE
T ss_pred ccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEe---CCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEE
Confidence 22222221 11 12234689999999998 44 7889999965321 111110 0123578999
Q ss_pred ccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.++..+|.|.|+|.|.|..|....++.|.+...+
T Consensus 250 ~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~ 283 (289)
T 3ejj_X 250 NAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283 (289)
T ss_dssp SSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred EeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence 9999999999999999999999998888876554
No 98
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.76 E-value=2.1e-17 Score=168.68 Aligned_cols=272 Identities=13% Similarity=0.102 Sum_probs=155.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Cee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++. +.. +
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 60 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQAS--------------------------GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEF 60 (457)
T ss_dssp CCCEEECTTCCEEECEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred CCceEEcCCCCEEEEEEec--------------------------CccccCcEEEEEEeCCCCCcEEEEEEecCCCceec
Confidence 3457889999999999998 544 556777662 111 1
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC------------c--eEEEEEeec-----ee-ee---
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG------------T--ATASAHVTG-----TE-FT--- 234 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g------------~--~~~~~~~~~-----~~-~~--- 234 (516)
....|+.+... +...+|.|.+++.+|+|.|+|.+.+..| . ....+.+.. .. +.
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~ 140 (457)
T 1hzh_H 61 SAKFQDRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP 140 (457)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC
T ss_pred CccccCceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc
Confidence 01346665443 4567999999999999999999998754 1 112222221 11 11
Q ss_pred eccccCCceEEEEEEEEccCCC-CC-ceeccccccc----ceEEEEEec-----ceeeEEEccCCCCCceEEEEEEEecC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT-EK-PKISLDALIG----KRIKEFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~-p~-p~i~W~~~~~----~~~~~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~ 303 (516)
...+.+|..+.+.|.+ .|. |. +.+.|.+... ......... ....|.|.++..+| |.|+|.|.|..
T Consensus 141 ~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~ 216 (457)
T 1hzh_H 141 SSKSTSGGTAALGCLV---KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 216 (457)
T ss_dssp CSCCCTTCCEEEEEEE---ESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGG
T ss_pred cccccCCCcEEEEEEE---eEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCC
Confidence 1235689999999998 454 54 7899976331 111111111 12378999999989 99999999987
Q ss_pred CCcceeEEEEEecCCCCCCCCceeee--ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 304 GIDMADIEVVVVSKPGPPTGPIDYTT--VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 304 g~~~~~~~l~v~~~p~~p~~p~~~~~--~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
+.......+.+...+..-..++.... ...-.+.+ .+|. ....+..|+.+.|.|.+.|
T Consensus 217 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~--~~p~-------------------~~~~~~~G~~v~L~C~~~g 275 (457)
T 1hzh_H 217 SNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFL--FPPK-------------------PKDTLMISRTPEVTCVVVD 275 (457)
T ss_dssp GTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEE--ECCC-------------------HHHHHCTTSCCCEEEEEEC
T ss_pred CCcceeEEecccCCCcccccCCCCCccccCCceEEe--ECcC-------------------chhhcccCCceEEEEEEEc
Confidence 66443333332221100000000000 00000000 0110 0011457999999999998
Q ss_pred ecCC----ceEEEECCeecCCCCceEEE-EcCCe----EEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 382 RPKP----TPIWTVNGDEVSPDGRIKFE-TSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 382 ~p~~----~i~W~~~~~~l~~~~~~~~~-~~~~~----~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.+++ .|.|++++..+......... ...+. ..|.|..... .|.|.|+|.|.|..+.......+
T Consensus 276 ~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~-~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 276 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW-LNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHH-HHTCCEEEEEECTTSSSCEEEEE
T ss_pred ccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHc-cCCCcEEEEEeCCCCCCcceEEE
Confidence 8653 89999999876432221111 11111 1222323333 34999999999887665444333
No 99
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.76 E-value=4.6e-18 Score=153.27 Aligned_cols=165 Identities=12% Similarity=-0.001 Sum_probs=121.6
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccc----------------------eEEEEEecceeeEEEccCCCCCceE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK----------------------RIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~----------------------~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
....|+...|.|......|.|.|.+.|.+.... ...+........|.|.+++.+|+|.
T Consensus 4 ta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 83 (203)
T 4fa8_A 4 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 83 (203)
T ss_dssp EEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeE
Confidence 346799999999877778899999999762111 1122234556789999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.|.|..|.....+.|.|..+|... ..+....+.+|+.+.
T Consensus 84 Y~C~a~n~~g~~~~~~~l~V~~p~~~~--------------------------------------~~~~~~~v~~g~~~~ 125 (203)
T 4fa8_A 84 YLCRMKLGETEVTKQEHLSVVKPLTLS--------------------------------------VHSERSQFPDFSVLT 125 (203)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEEEE--------------------------------------EEEEECCSSCSCCEE
T ss_pred EEEEEEcCCCcEEEEEEEEecCCceee--------------------------------------ecceeEEEcCCCEEE
Confidence 999999999988888888886543221 112334567899999
Q ss_pred EEEEEeeecCCceEEEECCeecC----CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~----~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
|.|.+.|.|.|.|.|++++..+. .+.++.+..++....+.|.++.. .|.|.|+|.|.|..|....
T Consensus 126 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~-~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 126 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPK-PWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp EEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECS-SCCCCEEEEEESSSCEEEE
T ss_pred EEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCH-HHCEEEEEEEEcCCCEEEE
Confidence 99999999999999988765432 23455555445555677789999 9999999999999998654
No 100
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.75 E-value=2.8e-17 Score=152.37 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=95.8
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.++...|+|.|+|.+.|..|.......+.|...+..+. ....
T Consensus 72 ~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~--~~~~------------------------------- 118 (241)
T 3grw_A 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP--ILQA------------------------------- 118 (241)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCC--EEEE-------------------------------
T ss_pred eEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCc--eeec-------------------------------
Confidence 3567777777777777777777766666666777765433211 1000
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCeecCCCCceEEEE--------cCCeEEEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGDEVSPDGRIKFET--------SENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~~l~~~~~~~~~~--------~~~~~~l~i~~~~~~~~~g~y 427 (516)
.......+..|+.+.|.|.+.+.|.+.+.|++ ++..+..+....... ......|.|.++.. .|.|.|
T Consensus 119 ~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y 197 (241)
T 3grw_A 119 GLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSE-RDGGEY 197 (241)
T ss_dssp CTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCG-GGCEEE
T ss_pred CCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCc-ccCcEE
Confidence 12344567889999999999999999999999 777665443221111 11346799999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
+|.|.|..|..+.++.|.|..+|.+|
T Consensus 198 ~C~a~N~~g~~~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 198 LCRATNFIGVAEKAFWLSVHGPRAAE 223 (241)
T ss_dssp EEEEECSSCEEEEEEEEEC-------
T ss_pred EEEEecCcceEEEEEEEEecCCCCCC
Confidence 99999999999999999999888777
No 101
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.75 E-value=2e-17 Score=152.11 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=100.1
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
..|.|.+++..|+|.|+|.+.|..|.......+.|...+..+.. . ..
T Consensus 76 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~--~-------------------------------~~ 122 (231)
T 3ojm_B 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI--L-------------------------------QA 122 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCE--E-------------------------------CT
T ss_pred ceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCc--e-------------------------------ee
Confidence 35677777777777777777777776666677777655432210 0 00
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEE----CCeecCCCCceEE--EE-----cCCeEEEEEcCceecCCceEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV----NGDEVSPDGRIKF--ET-----SENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~----~~~~l~~~~~~~~--~~-----~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
..+....+..|+.+.|.|.+.+.|.+.+.|++ ++..+..+..... .. ......|.|.++.. .|.|.|+
T Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~ 201 (231)
T 3ojm_B 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYI 201 (231)
T ss_dssp TCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCG-GGCEEEE
T ss_pred ccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCH-HHCeEEE
Confidence 12345678899999999999999999999999 7766643332111 11 11224699999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 429 IQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.|.|..|..+.++.|.|..+|.+|
T Consensus 202 C~a~n~~g~~~~~~~l~V~~~p~~p 226 (231)
T 3ojm_B 202 CKVSNYIGQANQSAWLTVLPKQQAP 226 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCC---
T ss_pred EEEEeccceEeeEEEEEEecCCCCC
Confidence 9999999999999999999998887
No 102
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=151.49 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=123.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecC--CeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTK--SETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~~l 198 (516)
+..+.+.+|+.+.|.|.+.. +.|.+.++|++++..+..+.++.+.... +..+|
T Consensus 9 ~~~~~v~eg~~v~l~c~~~~-------------------------~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L 63 (207)
T 3rbs_A 9 ELAVEILEKGQVRFWMQAEK-------------------------LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63 (207)
T ss_dssp EEEEEECGGGCEEEEEECSC-------------------------CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEE
T ss_pred CCceEEEeCCeEEEEEEEec-------------------------CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEE
Confidence 44688999999999999871 4799999999999999888777776544 55689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEee------------------------ceee---eeccccCCceEEEEEEEE
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVT------------------------GTEF---TDNNVHEGKAYEYRVSAV 251 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~------------------------~~~~---~~~~l~~g~~~~~~~~~~ 251 (516)
.|.+++.+|+|.|+|.+.| |.......+. ...| ....+.+|....|.|.+
T Consensus 64 ~I~~v~~~D~G~Y~C~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v- 140 (207)
T 3rbs_A 64 FMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV- 140 (207)
T ss_dssp EESCCCGGGCEEEEEEEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEE-
T ss_pred EECCCChhhCEEEEEEEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEE-
Confidence 9999999999999999998 4433222210 1111 12356789999999998
Q ss_pred ccCCC-CCceecccccccc---eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 252 NAAGT-EKPKISLDALIGK---RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 252 ~~~g~-p~p~i~W~~~~~~---~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
.|. |.|.+.|.+.... ............|.|.++..+|+|.|+|.|.|..|....++.|..
T Consensus 141 --~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 141 --ANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp --ESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred --eCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 787 8999999652110 001112334457999999999999999999999999888877754
No 103
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.75 E-value=5.4e-17 Score=144.45 Aligned_cols=176 Identities=20% Similarity=0.271 Sum_probs=123.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee-CCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-NGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-~~~~~~~~~~~~~~~~~~~~~ 197 (516)
..+..+.+.+|+.+.|.|.+. +.|. .+.|++ ++..+....++.+...+....
T Consensus 7 ~~~~~~~v~~G~~v~L~C~~~--------------------------~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 59 (189)
T 2v44_A 7 ISLSKVELSVGESKFFTCTAI--------------------------GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSR 59 (189)
T ss_dssp ESCSEEEEETTCCEEEEEEEE--------------------------ECCS-EEEEECTTSCBCCCCSSEEEEEETTEEE
T ss_pred ecCCceEEecCCcEEEEEEee--------------------------cCCe-eEEEEeCCCCccCCCceEEEECCCCeEE
Confidence 345668899999999999999 7777 899999 777777666776666666667
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEec
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTS 277 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~ 277 (516)
|.|.+++.+|+|.|+|.+.+..|...
T Consensus 60 L~i~~~~~~d~G~Y~C~~~~~~g~~~------------------------------------------------------ 85 (189)
T 2v44_A 60 LTIYNANIEDAGIYRCQATDAKGQTQ------------------------------------------------------ 85 (189)
T ss_dssp EEECSCCGGGCEEEEEEEECTTSCEE------------------------------------------------------
T ss_pred EEEccCCcccCeEEEEEEEeCCCCcE------------------------------------------------------
Confidence 77777777777777777766544321
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
...+.|.|...|....
T Consensus 86 -----------------------------~~~~~l~v~~~p~~~~----------------------------------- 101 (189)
T 2v44_A 86 -----------------------------EATVVLEIYQKLTFRE----------------------------------- 101 (189)
T ss_dssp -----------------------------EEEEEEEEECCCEEES-----------------------------------
T ss_pred -----------------------------EEEEEEEEecCCceee-----------------------------------
Confidence 1122222222221110
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
......+..|+.+.|.|.+.|.|.+.+.|++++..+. ...++.... + ..|.|.++.. .|.|.|+|.|.|..
T Consensus 102 ---~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--~-~~L~i~~v~~-~d~G~Y~C~a~n~~ 174 (189)
T 2v44_A 102 ---VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--N-NNLQILNINK-SDEGIYRCEGRVEA 174 (189)
T ss_dssp ---CCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECT--T-SCEEETTCCG-GGCEEEEEEEEETT
T ss_pred ---cCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEec--C-CcEEEEEcCc-ccCeEEEEEEEccc
Confidence 1123467899999999999999999999999998764 234444332 2 2699999999 99999999999999
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|.......+.|
T Consensus 175 ~~~~~~~~~~v 185 (189)
T 2v44_A 175 RGEIDFRDIIV 185 (189)
T ss_dssp TTEEEEEEEEE
T ss_pred cCceeeeeEEE
Confidence 77655544443
No 104
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.4e-17 Score=144.84 Aligned_cols=80 Identities=25% Similarity=0.410 Sum_probs=68.2
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
..+..|+.+.|.|.+.|.|.+.+.|++++..+....++.... ....|.|.++.. .|.|.|+|.|.|..|....++.|
T Consensus 108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l 184 (189)
T 2v5t_A 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFL 184 (189)
T ss_dssp EETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET--TTTEEEECSCCG-GGCEEEEEEEEETTEEEEEEEEE
T ss_pred ccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec--CCCEEEEcCCCh-hhCeeEEEEEEeCCCceeEEEEE
Confidence 345678999999999999999999999999887777666543 334799999999 99999999999999998888888
Q ss_pred EEe
Q psy7039 445 YVV 447 (516)
Q Consensus 445 ~v~ 447 (516)
.|.
T Consensus 185 ~V~ 187 (189)
T 2v5t_A 185 QVF 187 (189)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 105
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.75 E-value=1.3e-16 Score=142.81 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=62.6
Q ss_pred cEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee-EE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-AS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s 441 (516)
...+..|+.+.|.|.+.|.|.+ .+.|++++..+...... .....|.|.++ .|+|.|+|.|.|..|... .+
T Consensus 115 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~ 186 (195)
T 2c5d_C 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGL---NKTSSFSCEAHNAKGVTTSRT 186 (195)
T ss_dssp CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCC---SSCEEEEEEEEETTEEEECCC
T ss_pred cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEccc---ccCceEEEEEEcCCCceEEEE
Confidence 3567889999999999999999 99999999887654433 34467999988 468999999999999874 78
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 187 ~~l~V 191 (195)
T 2c5d_C 187 ATITV 191 (195)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88888
No 106
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.74 E-value=4.7e-17 Score=157.36 Aligned_cols=210 Identities=11% Similarity=0.017 Sum_probs=147.5
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCcccc--CcccceEEecCCeEEEEEee------ee
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR--STLNDVKIKAGQSFSFDVKE------FR 140 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~------~~ 140 (516)
...|.|.+++..|.|.|+|.|.|..|.... ...+.. ...+|.+.. .......+..|+.+.|.|.+ .
T Consensus 61 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~---~~~v~v--~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~- 134 (315)
T 1itb_B 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRI---KISAKF--VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE- 134 (315)
T ss_dssp SSBEECTTCCGGGCSCCEECCCSSSCCCCE---ECCCEE--ECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTT-
T ss_pred CCeEEECCCChhhCEEEEEEEeCCceEEEE---EEEEEE--eCCCCCcccccccccceEEecCCCeEEEEecccccccC-
Confidence 458999999999999999999987664331 111211 113444321 12234668899999999998 6
Q ss_pred ccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEE-cCC
Q psy7039 141 ELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLE-NNL 219 (516)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~-~~~ 219 (516)
+.|.+.+.|++++..+...... +.. ....|.|.+++.+|+|.|+|.+. |..
T Consensus 135 -------------------------g~p~~~i~W~k~~~~l~~~~~~-~~~--~~~~L~i~~v~~~d~G~Y~C~a~~n~~ 186 (315)
T 1itb_B 135 -------------------------NNELPKLQWYKDCKPLLLDNIH-FSG--VKDRLIVMNVAEKHRGNYTCHASYTYL 186 (315)
T ss_dssp -------------------------TTCCCCCEEEETTEECCCCSSS-EEE--ETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred -------------------------CCCCCEEEEEECCEECCCccce-Eee--cCceEEEEeceehhCcEEEEEEEcCCC
Confidence 8899999999999988653222 111 23489999999999999999999 777
Q ss_pred CceEE---EEEeec--------eeee-----eccccCCceEEEEEEEEccCCCCCceecccccc-----cce----EEEE
Q psy7039 220 GTATA---SAHVTG--------TEFT-----DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKR----IKEF 274 (516)
Q Consensus 220 g~~~~---~~~~~~--------~~~~-----~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----~~~----~~~~ 274 (516)
|.... .+.+.. ..+. ...+..|+.+.|.|.+ .|.|.|.+.|.+.. ... ....
T Consensus 187 g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~ 263 (315)
T 1itb_B 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV---TGQLSDIAYWKWNGSVIDEDDPVLGEDYYS 263 (315)
T ss_dssp TEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE---EECTTSEEEEEETTEECCTTCSSEEEEEEE
T ss_pred CcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE---ecCCCCeeEEEECCEECCccccccccccee
Confidence 76532 221111 1111 1356789999999999 78899999996511 110 0111
Q ss_pred Ee--------cceeeEEEccCCCCC-ceEEEEEEEecCCCcceeEEEEEe
Q psy7039 275 VT--------STTASLNIKNSVRKD-SGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 275 ~~--------~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.. .....|.|.++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus 264 ~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 264 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp ECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred eeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 11 124589999999999 999999999999999888888764
No 107
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.74 E-value=1.1e-16 Score=141.52 Aligned_cols=73 Identities=19% Similarity=0.343 Sum_probs=59.7
Q ss_pred cEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee-EE
Q psy7039 364 DMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS-AS 441 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s-~s 441 (516)
...+..|+.+.|.|.+.|.|.+ .+.|++++..+..... ....|.|.++ .|+|.|+|.|.|..|... .+
T Consensus 107 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~---~d~G~Y~C~a~N~~g~~~s~~ 176 (182)
T 1rhf_A 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV---TQSTMFSCEAHNLKGLASSRT 176 (182)
T ss_dssp CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC---SSCEEEEEEEEETTEEEECCC
T ss_pred ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc---ccCeEEEEEEECCCCCcccce
Confidence 3567899999999999999999 9999999987754321 4467899887 578999999999999874 47
Q ss_pred EEEEE
Q psy7039 442 CKVYV 446 (516)
Q Consensus 442 ~~l~v 446 (516)
+.|.|
T Consensus 177 ~~l~V 181 (182)
T 1rhf_A 177 ATVHL 181 (182)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77766
No 108
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.74 E-value=8.1e-16 Score=146.95 Aligned_cols=84 Identities=26% Similarity=0.388 Sum_probs=69.1
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|.+|.+|++..++++++.|+|.+|. +.+.+|.|+|+..+. .|... ....+.+++.|.+|.+++.|.|+|+
T Consensus 18 ~~~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~ 92 (290)
T 3r8q_A 18 GPAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEI-NLAPDSSSVVVSGLMVATKYEVSVY 92 (290)
T ss_dssp --CCCCCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSSCCEEE-EECTTCCEEEECSCCSSCEEEEEEE
T ss_pred CCCCCCCCceEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCCceEEE-EcCCCccEEEeCCCCCCCEEEEEEE
Confidence 3467899999999999999999999972 368999999998653 45444 3445788999999999999999999
Q ss_pred EecCCCCCCCC
Q psy7039 89 AVNAAGPGEAS 99 (516)
Q Consensus 89 a~n~~g~~~~s 99 (516)
|.|..|.+.++
T Consensus 93 a~~~~g~s~~s 103 (290)
T 3r8q_A 93 ALKDTLTSRPA 103 (290)
T ss_dssp EEETTEECCCE
T ss_pred EEeCCCCCCCc
Confidence 99988877654
No 109
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.74 E-value=1.5e-17 Score=149.79 Aligned_cols=160 Identities=12% Similarity=0.042 Sum_probs=114.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec-----------------cCC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ-----------------IGG 185 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~-----------------~~~ 185 (516)
.+.+..|+.+.|.|.+.. +.+.|.+.+.|++++.... ...
T Consensus 2 ~Vta~~Ge~v~L~C~~~~-----------------------v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~ 58 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRR-----------------------VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRG 58 (203)
T ss_dssp CCEEETTCCEEEEEECSS-----------------------TTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBT
T ss_pred CeEEEcCCCEEEEeeeec-----------------------cCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccc
Confidence 477899999999996430 0056777888887653211 113
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCCC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTEK 258 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p~ 258 (516)
++.+........|.|.+++.+|+|.|+|.+.|..|.......+.+.. .....+.+|....|.|.+ .|.|.
T Consensus 59 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~---~G~P~ 135 (203)
T 4fa8_A 59 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV---NAFPH 135 (203)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE---EEESC
T ss_pred eEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc---CCCCC
Confidence 34445556678999999999999999999999988877665543322 234567789999999998 78999
Q ss_pred ceeccccccc---------ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 259 PKISLDALIG---------KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 259 p~i~W~~~~~---------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
|.++|.+..+ .++.+...+....+.|.++..+|+|.|+|.|.|..|.+..
T Consensus 136 P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 136 PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred CEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 9999965322 1122222223344566799999999999999999998764
No 110
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.74 E-value=2.5e-16 Score=147.79 Aligned_cols=221 Identities=14% Similarity=0.112 Sum_probs=147.2
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcce
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~ 105 (516)
..+.+.|.+...... .+ ..+.|...+. ........|.|.+++..|.|.|+|.|.|..+.. ...+
T Consensus 15 ~G~~v~l~C~~~~~~--~~---~~~~W~~~g~------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~-----~~~l 78 (262)
T 3rjd_A 15 QEETVTLHCEVLHLP--GS---SSTQWFLNGT------ATQTSTPSYRITSASVNDSGEYRCQRGLSGRSD-----PIQL 78 (262)
T ss_dssp TTCCEEEEEECSSCC--CT---TCEEEEETTE------ECSCCSSEEEESSCCGGGCEEEEEEESSSCCCC-----CEEE
T ss_pred CCCeEEEEEECCCCC--CC---ceEEEEECCE------EeeccCCeEEEecCCcccCeEEEEEEecCCccc-----cEEE
Confidence 566778888763211 11 1233444332 111246789999999999999999998754321 2223
Q ss_pred EeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC
Q psy7039 106 VAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG 185 (516)
Q Consensus 106 ~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~ 185 (516)
.+.. +| +. ..+....+.+|+.+.|.|.+.+ +.|.+.+.|++++..+...
T Consensus 79 ~v~~---~~-~~-~~~~~~~~~~g~~v~l~C~~~~-------------------------~~p~~~v~W~~~g~~~~~~- 127 (262)
T 3rjd_A 79 EIHR---GW-LL-LQVSSRVFTEGEPLALRCHAWK-------------------------DKLVYNVLYYRNGKAFKFF- 127 (262)
T ss_dssp EEEC---SS-EE-EEESCSEEETTSCEEEEEEEGG-------------------------GCCCEEEEEEETTEEEEEE-
T ss_pred EEec---cc-eE-ecCCCeEEecCCeEEEEEEccC-------------------------CCCCceEEEEECCcccccc-
Confidence 3321 22 22 3344567889999999999941 7788999999998877421
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee------e---eeccccCCceEEEEEEEEccCCC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE------F---TDNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~------~---~~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.....|.|.+++.+|+|.|+|.+.|..+.......+.+.. + ....+.+|+.+.+.|.+ .|.
T Consensus 128 -------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~---~~~ 197 (262)
T 3rjd_A 128 -------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET---KLL 197 (262)
T ss_dssp -------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEEC---CCC
T ss_pred -------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEc---ccC
Confidence 1245799999999999999999999886665544333221 1 12246789999999998 777
Q ss_pred CC-ceec----ccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 257 EK-PKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 257 p~-p~i~----W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|. |.+. |.+. +. .+........|.|.++..+|+|.|+|.|.|..|..
T Consensus 198 p~~p~~~~~~~w~~~-~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 198 LQRPGLQLYFSFYMG-SK--TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp CC-----EEEEEEET-TE--EEEEEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred CCCCCccEEEEEEeC-Cc--EecccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 65 6544 4321 11 12223456789999999999999999999999975
No 111
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.74 E-value=8.3e-17 Score=144.49 Aligned_cols=186 Identities=20% Similarity=0.263 Sum_probs=129.1
Q ss_pred CcccceEEecCCeEEEEEe-eeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEeecCCee
Q psy7039 119 STLNDVKIKAGQSFSFDVK-EFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQTTKSET 196 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~~~~ 196 (516)
..+..+.+.+|+.+.|.|. +. +.|. +.+.|++++..+...............
T Consensus 13 ~~~~~~~v~~G~~v~L~C~~~~--------------------------~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T 3s97_C 13 EERPEVRVKEGKGMVLLCDPPY--------------------------HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66 (201)
T ss_dssp SCCCCEEEETTCCEEECCCCCS--------------------------EESSCCEEEEEESSTTCBCCCSSSEEECTTTC
T ss_pred CCCceEEEECCCCEEEeccccc--------------------------cCCCceEEEEEECCceeeeeeCCCeEEEcCCC
Confidence 5667789999999999999 77 7888 999999998777532222222234456
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEe
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVT 276 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~ 276 (516)
.|.|.+++.+|+|.|+|.+.+..+...... ....+.+.. ...
T Consensus 67 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~---------------~~~~~~~~~---~~~-------------------- 108 (201)
T 3s97_C 67 NLYIANVEASDKGNYSCFVSSPSITKSVFS---------------KFIPLIPIP---ERT-------------------- 108 (201)
T ss_dssp CEEESSCCGGGCEEEEEEEEEGGGTEEEEC---------------CCEEEEEEC---CSS--------------------
T ss_pred eEEECcCCcccCeEEEEEEEecCCCcchhh---------------cccceeecc---ccc--------------------
Confidence 799999999999999999987554332110 000001100 000
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
.......+.+
T Consensus 109 ----------------------------~~~~~p~~~~------------------------------------------ 118 (201)
T 3s97_C 109 ----------------------------TKPYPADIVV------------------------------------------ 118 (201)
T ss_dssp ----------------------------CCCEEEEEEE------------------------------------------
T ss_pred ----------------------------cCCCCCceEe------------------------------------------
Confidence 0000000000
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
......+..|+.+.|.|.+.|.|.+.+.|++++..+.... .... ....|.|.++.. .|.|.|+|.|.|..|
T Consensus 119 ----~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--~~~~--~~~~L~i~~v~~-~d~G~Y~C~a~n~~g 189 (201)
T 3s97_C 119 ----QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EIST--SGAVLKIFNIQL-EDEGIYECEAENIRG 189 (201)
T ss_dssp ----ECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--EEET--TTTEEEECSCCG-GGCEEEEEEEEETTE
T ss_pred ----cCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--eecC--CCCEEEEccCCh-hhCEEEEEEEEecCC
Confidence 0123567899999999999999999999999998765432 2222 234799999999 999999999999999
Q ss_pred ceeEEEEEEEe
Q psy7039 437 SDSASCKVYVV 447 (516)
Q Consensus 437 ~~s~s~~l~v~ 447 (516)
....++.|.|.
T Consensus 190 ~~~~~~~l~V~ 200 (201)
T 3s97_C 190 KDKHQARIYVQ 200 (201)
T ss_dssp EEEEEEEEEEE
T ss_pred ceeeeEEEEEe
Confidence 99888888875
No 112
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.74 E-value=4.9e-17 Score=158.49 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=162.0
Q ss_pred eeeCCeeEEEecCCCCCCCC---ceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE-EEEEEEecCCCCCCCC
Q psy7039 24 DWDKDHVDLQWTPPISDGGS---PITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY-QFQVRAVNAAGPGEAS 99 (516)
Q Consensus 24 ~~~~~~v~l~W~~p~~~~~~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y-~~~~~a~n~~g~~~~s 99 (516)
......+.|.+......... .--...|.|...+......... .....|.|.+++..|.| .|+|.|.|..|.....
T Consensus 41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~ 119 (329)
T 3oq3_B 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG 119 (329)
T ss_dssp ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEE
T ss_pred EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCceeeE
Confidence 34566777777652100000 0012445565554421111001 23678999999999999 9999999987652211
Q ss_pred CCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCC
Q psy7039 100 KPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSING 178 (516)
Q Consensus 100 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~ 178 (516)
....... .+|.+. .......+.+|+.+.|.|.+. +.| .+.+.|++++
T Consensus 120 --~~~~v~~---~~p~~~-~~~~~~~~~~G~~v~L~C~~~--------------------------g~p~~~~i~W~k~~ 167 (329)
T 3oq3_B 120 --IVRSHIR---KPPSCI-PETYELGTHDKYGIDLYCGIL--------------------------YAKHYNNITWYKNN 167 (329)
T ss_dssp --EEEEEEC---CCCSCE-EEEEETTSSTTTCEEEECCCC--------------------------SCCCCCEEEEEETT
T ss_pred --EEEEEEc---CCCcEe-ccccceEEeCCCcEEEEeccC--------------------------CCCCCceEEEEECC
Confidence 1111111 234433 333334467899999999999 888 8999999999
Q ss_pred eeecc-CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcC--CCceEEE----E--Eeece--------eeeeccccCC
Q psy7039 179 QVCQI-GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENN--LGTATAS----A--HVTGT--------EFTDNNVHEG 241 (516)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~--~g~~~~~----~--~~~~~--------~~~~~~l~~g 241 (516)
..+.. ..++... ...|.|.+++.+|+|.|+|.+.|. .|..... . .+... ......+..|
T Consensus 168 ~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G 243 (329)
T 3oq3_B 168 QELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243 (329)
T ss_dssp EECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTT
T ss_pred ccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecC
Confidence 98853 3333332 368999999999999999999986 5443222 2 22111 1122456789
Q ss_pred ceEEEEEEEEccCCCC---Cc-eeccccccc------ceEEEE--Ee--cceeeEEEccCCCCCce-EEEEEEEecCCCc
Q psy7039 242 KAYEYRVSAVNAAGTE---KP-KISLDALIG------KRIKEF--VT--STTASLNIKNSVRKDSG-IYKIEAKNDYGID 306 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p---~p-~i~W~~~~~------~~~~~~--~~--~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~ 306 (516)
+.+.+.|.+ .|.| .| .+.|.+... ...... .. .....|.|.++..+|.| .|+|.|.|..|..
T Consensus 244 ~~~~l~C~~---~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~ 320 (329)
T 3oq3_B 244 EPANITCTA---VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK 320 (329)
T ss_dssp SCEEEEEEE---EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE
T ss_pred CCEEEEEEE---EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce
Confidence 999999999 5655 77 789965211 111110 11 14678999999999999 9999999999998
Q ss_pred ceeEEEEE
Q psy7039 307 MADIEVVV 314 (516)
Q Consensus 307 ~~~~~l~v 314 (516)
..++.|.|
T Consensus 321 ~~~~~l~v 328 (329)
T 3oq3_B 321 TLTTTVVL 328 (329)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 88777765
No 113
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.74 E-value=4.3e-15 Score=141.28 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=67.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+... +.|. .........++.|.+|.+++.|.|+|+
T Consensus 12 ~~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 86 (283)
T 1tdq_A 12 IPVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKT-TFRLQPPLSQYSVQALRPGSRYEVSIS 86 (283)
T ss_dssp CCSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCE-EEEECTTCSEEEECSCCTTCEEEEEEE
T ss_pred ccCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcE-EEEeCCCCCEEEecCCCCCCEEEEEEE
Confidence 3578999999999999999999999974 46899999997643 3553 333456789999999999999999999
Q ss_pred EecCCCCCC
Q psy7039 89 AVNAAGPGE 97 (516)
Q Consensus 89 a~n~~g~~~ 97 (516)
|.|..|.+.
T Consensus 87 a~~~~g~s~ 95 (283)
T 1tdq_A 87 AVRGTNESD 95 (283)
T ss_dssp EEETTEECC
T ss_pred EECCCCCCC
Confidence 999877654
No 114
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=150.97 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=130.3
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--CceE
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRAD 188 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~~ 188 (516)
..+|.|. .+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+... .++.
T Consensus 17 ~~~P~~~--~p~~~~~~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~g~~l~~~~~~~~~ 68 (215)
T 3mtr_A 17 MYAPKLQ--GPVAVYTWEGNQVNITCEVF--------------------------AYPSATISWFRDGQLLPSSNYSNIK 68 (215)
T ss_dssp CEEEEEE--CCSEEEECTTCCEEEEEEEE--------------------------EESCCEEEEEETTEESSCSSSCSEE
T ss_pred ecCCccc--CCceEEEECCCCEEEEEEEe--------------------------ecCCCEEEEEECCeECCCCCCccEE
Confidence 3456663 44558899999999999999 9999999999999877543 1222
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
+...+.
T Consensus 69 ~~~~~~-------------------------------------------------------------------------- 74 (215)
T 3mtr_A 69 IYNTPS-------------------------------------------------------------------------- 74 (215)
T ss_dssp EEEETT--------------------------------------------------------------------------
T ss_pred EecCCC--------------------------------------------------------------------------
Confidence 222222
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
...|.|.++...|.|.|+|.|.|..|.....+.+.|...|.+|.. +.+ .....++.|+|.+|..+++.
T Consensus 75 ----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~-~~~-~~~~~~~~l~w~~p~~~~~~ 142 (215)
T 3mtr_A 75 ----------ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSI-DQV-EPYSSTAQVQFDEPEATGGV 142 (215)
T ss_dssp ----------EEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEE-EEE-EEETTEEEEEEECCSCCCSS
T ss_pred ----------eeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcc-eEE-EEecceEEEEEecCCccCCC
Confidence 235666666666666666666666666666666666666665532 333 34567899999999888888
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEE
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~ 428 (516)
+|.+| .+.|.+++........+..........|.|.++.+ .+.|.|+
T Consensus 143 pi~~y--------------------------------~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~-~~~y~~~ 189 (215)
T 3mtr_A 143 PILKY--------------------------------KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP-ETTYAVR 189 (215)
T ss_dssp CEEEE--------------------------------EEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCT-TCEEEEE
T ss_pred ceEEE--------------------------------EEEEEECCCCcccccccccccccccccEEECCCCC-CCEEEEE
Confidence 88777 25666655321110000000001114799999999 9999999
Q ss_pred EEEEcCCCceeEEEEEEEecCCC
Q psy7039 429 IQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 429 c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
|.|.|..|.+..+..+.+.++|.
T Consensus 190 ~~A~N~~G~s~~S~~~~v~T~p~ 212 (215)
T 3mtr_A 190 LAALNGKGLGEISAASEFKTQPV 212 (215)
T ss_dssp EEEEESSCBCCCCCCEEEECCC-
T ss_pred EEEEeCCcccCcccceeeEeccc
Confidence 99999999988877777776553
No 115
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.74 E-value=4.1e-19 Score=180.15 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=158.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +. +.+.+.|+++. ..+
T Consensus 6 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (434)
T 1igy_B 6 SGAELARPGASVKMSCKAS--------------------------GYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNY 59 (434)
T ss_dssp CCCCEECTBCCEEECCEEC--------------------------SSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCC
T ss_pred CCCeEecCCCCEEEEEEcc--------------------------CCcccCceEEEEEECCCCCCEEEEEEccCCCceec
Confidence 4457889999999999998 54 25667787642 211
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE--EEEEeec------eeee---eccccCCceEEE
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT--ASAHVTG------TEFT---DNNVHEGKAYEY 246 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~--~~~~~~~------~~~~---~~~l~~g~~~~~ 246 (516)
....|+.+..+ +...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. ..+. ...+.+|..+.+
T Consensus 60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L 139 (434)
T 1igy_B 60 NQRFKDKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTL 139 (434)
T ss_dssp CGGGTTTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEE
T ss_pred CccccccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEE
Confidence 01245554432 3456899999999999999999988533221 1222211 0111 123468999999
Q ss_pred EEEEEccCCC-CCc-eecccccccce-EE----EEEe---cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKR-IK----EFVT---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~-~~----~~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
.|.+ .|. |.| .+.|.+..... .. .... .....|.|.++..+| |.|+|.|.|..|.......+.+..
T Consensus 140 ~C~~---~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~ 215 (434)
T 1igy_B 140 GCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRD 215 (434)
T ss_dssp EEEE---EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCC
T ss_pred EEEE---eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCC
Confidence 9998 454 666 89997632210 00 0000 112468899999888 999999999988754443333221
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec----CCceEEEEC
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP----KPTPIWTVN 392 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p----~~~i~W~~~ 392 (516)
....... +.....-.+.+ .+|. ....+..|+.+.|.|.+.|.+ .+.|.|+++
T Consensus 216 ~~~~v~~---~~~~~~p~v~~--~~p~-------------------~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~ 271 (434)
T 1igy_B 216 CGCKPCI---CTVPEVSSVFI--FPPK-------------------PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVD 271 (434)
T ss_dssp CCCCCCC---CCCSSSCCEEE--ECCC-------------------HHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSS
T ss_pred CCCcccc---CCCCcCcEEEE--eCCC-------------------hHHhcccCCCcEEEEEEeccccCCCCeEEEEEeC
Confidence 0000000 00000000000 0110 000167899999999999884 358999999
Q ss_pred CeecCCCCceEEE-EcC----CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 393 GDEVSPDGRIKFE-TSE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 393 ~~~l~~~~~~~~~-~~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+..+......... ... ....|.|..+.. .|.|.|+|.|.|..|...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~~~~~ 322 (434)
T 1igy_B 272 NVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW-LNGKEFKCRVNSAAFPAP 322 (434)
T ss_dssp SCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHH-HHTCCCBCCBCCSSCSSC
T ss_pred CcccCCcccCcceeCCCCcEEEEEEEEECHHHc-cCCCcEEEEEECCCCCCc
Confidence 8766432111110 011 124689999999 999999999999998753
No 116
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.74 E-value=1e-17 Score=164.63 Aligned_cols=220 Identities=12% Similarity=-0.026 Sum_probs=124.8
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|.... ...+.+...+....+. ...+....+.+|+.+.|.|...
T Consensus 78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~-~~~l~V~~~~~~~~~~--~~~~~~~~~~~g~~~~l~C~~~--------- 145 (349)
T 4dep_C 78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSP--MKLPVHKLYIEYGIQRITCPNV--------- 145 (349)
T ss_dssp TTEEEESSCCGGGCEEEEEEEECSSCEEEE-EEEEEEECCCTTSCCS--CCCCEEEEETTCSEEEEECCSC---------
T ss_pred CCEEEEccCChhhCEEEEEEEecCCceEEE-EEEEEEecCCcccCcc--cccCcceeeecCccEEEEcCCC---------
Confidence 568999999999999999999997654321 1122222211111111 1234456788999999999852
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC-Cce---EE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL-GTA---TA 224 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~---~~ 224 (516)
.+++.+.|.+.+.|++++..+....++.. .+ ..|.|.+++.+|+|.|+|.+.|.. |.. ..
T Consensus 146 ------------~~~~~g~p~~~v~W~k~~~~l~~~~~~~~--~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~ 209 (349)
T 4dep_C 146 ------------DGYFPSSVKPTITWYMGCYKIQNFNNVIP--EG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTR 209 (349)
T ss_dssp ------------TTSSCTTSCCEEEEEETTEECCSCSSEEE--ET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred ------------cccccCCCCceEEEeeCCEECCCccceee--cC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEE
Confidence 00001789999999999998865433322 22 589999999999999999999976 443 23
Q ss_pred EEEeece---------ee---ee-c--cccCCceEEEEEEEEc-cCCCCCceecccccccc------eEEE---------
Q psy7039 225 SAHVTGT---------EF---TD-N--NVHEGKAYEYRVSAVN-AAGTEKPKISLDALIGK------RIKE--------- 273 (516)
Q Consensus 225 ~~~~~~~---------~~---~~-~--~l~~g~~~~~~~~~~~-~~g~p~p~i~W~~~~~~------~~~~--------- 273 (516)
.+.+.+. .+ .. . .+..|+.+.|.|.+.. ..|.|.|.+.|.+.... +...
T Consensus 210 ~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~ 289 (349)
T 4dep_C 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT 289 (349)
T ss_dssp EEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTT
T ss_pred EEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecC
Confidence 3333221 11 11 1 5678999999999832 11678999999652211 1100
Q ss_pred EEecceeeEEEccCCCCCc-eEEEEEEEecCCCcceeEEEEEec
Q psy7039 274 FVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~-g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
........|.|.++..+|. |.|+|.|.|..|.....+.|.|..
T Consensus 290 ~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred CCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 0011234599999999999 999999999999988888888754
No 117
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.73 E-value=1.4e-16 Score=144.41 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=129.0
Q ss_pred ecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC
Q psy7039 127 KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205 (516)
Q Consensus 127 ~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 205 (516)
..++.+.|.|.+. + .|.+.+.|++++..+....++.+...+....|.|.+++.
T Consensus 15 c~~~~~~l~C~~~--------------------------~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~ 68 (212)
T 2r15_A 15 STAEGIQLYSFVT--------------------------YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 68 (212)
T ss_dssp ECSSEEEEEEEBS--------------------------SCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCG
T ss_pred EcCceEEEEEEEe--------------------------ccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCc
Confidence 4677888888887 6 468999999999999888888888777788999999999
Q ss_pred CCCeeEEEEEEcCCCceEEEEEeecee-----------------------e-----eeccccCCceEEEEEEEEccCCCC
Q psy7039 206 SDTGHYSLTLENNLGTATASAHVTGTE-----------------------F-----TDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~~~~~~~~~-----------------------~-----~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
+|+|.|+|.+.|..|.......+.+.. + ....+..|+.+.+.|.+ .|.|
T Consensus 69 ~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~---~g~p 145 (212)
T 2r15_A 69 NDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV---WGDP 145 (212)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE---ECSS
T ss_pred ccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE---cCCC
Confidence 999999999999888777665543211 1 12456789999999998 7899
Q ss_pred Cceeccccc-----ccceEEEEEe-cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 258 KPKISLDAL-----IGKRIKEFVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 258 ~p~i~W~~~-----~~~~~~~~~~-~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
.|.+.|.+. ...+..+... .....|.|.++..+|.|.|+|.|.|..|.....+.|.|..
T Consensus 146 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 146 PPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp CCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 999999652 2233333333 4567999999999999999999999999988888888763
No 118
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.72 E-value=3.9e-15 Score=150.91 Aligned_cols=324 Identities=13% Similarity=0.060 Sum_probs=197.5
Q ss_pred CCCCCCcceEEEee-eCCeeEEEecCCCCC-CCCceeceEEEEEeCCC---CeEEeEEee--cC--CcEEEeCCC--cCC
Q psy7039 12 DEPGKPTDLEATDW-DKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG---NWEKAVVVP--AG--ETSCTVPGL--IEG 80 (516)
Q Consensus 12 ~~p~~p~~l~~~~~-~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~---~~~~~~~~~--~~--~~~~~i~~l--~~~ 80 (516)
.+|.+|.+|.+... ....+.|+|..+... .-.....|.|++..... .|.....+. +. .....-..+ -+.
T Consensus 88 ~~p~~p~~l~~~~~~~~~~l~~~W~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~w~s~~pl~c 167 (488)
T 2q7n_A 88 LIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQC 167 (488)
T ss_dssp ECCCCCCEEECCEETTTTEEEEEECBCGGGSCSSEEEEEEEECCCSSSSCSCCCEECCEECSSSCBCCEEEEECSSCCSS
T ss_pred cCCCCCeeEEEEEecCCCeEEEEEeCCCccccccCCeEEEEEEEEeccceEEEEEEEEEEecCCCceeEeeccCCCcccc
Confidence 45999999988755 357899999886421 11113568888644322 232221111 11 111122222 236
Q ss_pred CeEEEEEEEec----CCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccc
Q psy7039 81 ETYQFQVRAVN----AAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA 156 (516)
Q Consensus 81 ~~y~~~~~a~n----~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~ 156 (516)
..|.++++... -.|.+.+|..+........ .+..+. ..|....+..|++++|.|.+.
T Consensus 168 ~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~-~~t~i~-v~P~~~~v~~Gs~vtl~C~a~----------------- 228 (488)
T 2q7n_A 168 ATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI-RNTETN-VFPQDKVVLAGSNMTICCMSP----------------- 228 (488)
T ss_dssp SCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC-CCSSCC-EECTTCEEESSCCCEEEECCS-----------------
T ss_pred cceEEEEEEEeccccccCCCCCcCCCChhhcCCc-CCCceE-ECCCCCEEcCCCCEEEEEECC-----------------
Confidence 68888888875 3356667777766655332 233333 455567789999999999886
Q ss_pred cCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeec
Q psy7039 157 NSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDN 236 (516)
Q Consensus 157 ~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~ 236 (516)
. +.|.|++++..+... +..+....|.|.++...|+|.|.|.+.+ .
T Consensus 229 ---------~---~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~sd~g~y~~~C~~-~----------------- 273 (488)
T 2q7n_A 229 ---------T---KVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT-D----------------- 273 (488)
T ss_dssp ---------S---CEEEEEETTEECCCE-----ECSSSCEEEECCSCCCCCSSCEEEEEEE-S-----------------
T ss_pred ---------C---CEEEEEECCEECchh-----hccceEEEEEEeCCCcccCCcEEEEEEc-C-----------------
Confidence 2 489999998776532 1245567888888888888888775431 0
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+. ...+.+.+..
T Consensus 274 ----~~----------------------------------------------------------------i~~~~l~v~~ 285 (488)
T 2q7n_A 274 ----DD----------------------------------------------------------------VYGTVVFAGY 285 (488)
T ss_dssp ----SC----------------------------------------------------------------EEEEEEEEEC
T ss_pred ----Ce----------------------------------------------------------------EEEEEEEeeC
Confidence 00 0112344445
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCC--CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDD--GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~--~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~ 394 (516)
+|.+|.. +.+......++.++|.++.+. +|.+++.|..... ..|.. -.|.. ...
T Consensus 286 pP~~P~n-l~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~---------~~g~~--~~c~~------------~~~ 341 (488)
T 2q7n_A 286 PPDVPQK-LSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFES---------ISGKS--AVFHR------------IEG 341 (488)
T ss_dssp CCCCCCS-CEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEET---------TTCCE--EEEEC------------SSC
T ss_pred CCCCCcc-cEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEE---------ECCCC--CCCcc------------ccc
Confidence 5555544 677777888999999998876 3556666621100 01111 12221 110
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe----cCCCCCCCCcccccccCCeEEEE
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV----DKPSPPQGPLDVSDITPESCSLS 470 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~----~~p~~P~~~l~~~~~~~~~~~l~ 470 (516)
. .+....+.+..... ...|.|+|.|.|..|.... .+.+. .+|.|| .++++..++..++.|+
T Consensus 342 --~---------~~~~~~ct~~l~~~-~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP-~nl~v~~~s~~sl~Ls 406 (488)
T 2q7n_A 342 --L---------TNETYRLGVQMHPG-QEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDP-TSLKVKDINSTVVTFS 406 (488)
T ss_dssp --C---------CSSCEEEEEECCSS-CCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCC-EEEEEEECSTTCEEEE
T ss_pred --c---------CCceEEEEEcCCCC-ccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCC-eEEEEEecCCCEEEEE
Confidence 0 01112344544433 4788999999999998543 33332 357777 7888888888999999
Q ss_pred eeCCCCCCCCCcceEEEEEEecCCCce
Q psy7039 471 WKPPLDDGGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 471 W~~p~~~~~~~i~~Y~v~~~~~~~~~~ 497 (516)
|++|... ++.+..|.|+|+..+...+
T Consensus 407 W~pP~~~-~g~~l~YeV~Yr~~~~~~w 432 (488)
T 2q7n_A 407 WYLPGNF-TKINLLCQIEICKANSKKE 432 (488)
T ss_dssp EEEEEEC-SSSEEEEEEEEBCTTSCCE
T ss_pred EeCCCCC-CCcceEEEEEEEECCCCCc
Confidence 9998533 4678999999998866443
No 119
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.72 E-value=2.1e-16 Score=143.30 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=131.8
Q ss_pred CCceEEEEEEEEccCC-CCCceeccccc-----ccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 240 EGKAYEYRVSAVNAAG-TEKPKISLDAL-----IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g-~p~p~i~W~~~-----~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.++...+.|.+ .| .|.+.+.|.+. ...+..+........|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 16 ~~~~~~l~C~~---~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 16 TAEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp CSSEEEEEEEB---SSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred cCceEEEEEEE---eccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 45667788877 55 46889999652 23455555566677899999999999999999999887766666665
Q ss_pred EecCCCCCCCCceeee--c-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 314 VVSKPGPPTGPIDYTT--V-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 314 v~~~p~~p~~p~~~~~--~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
+...+........+.. . ......+.. ..+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------------------~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~ 152 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLG--------------------GLPDVVTIQEGKALNLTCNVWGDPPPEVSWL 152 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEE--------------------BCCSEEEEETTCCEEEEEEEECSSCCEEEEE
T ss_pred EeeccchhhhccccCcccccccCCCcccc--------------------cCCCcEEEccCCeEEEEEEEcCCCCceEEEE
Confidence 4320000000000000 0 000000000 1234567899999999999999999999999
Q ss_pred ECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 391 VNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+++..+..+.++.+... +....|.|.++.. .|.|.|+|.|.|..|....++.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 153 KNEKALAQTDHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp ETTEEECCCSSEEEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ECCeECccCCCEEEEEcCCCEEEEEEcCcch-HHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 99999887777777665 5667899999999 999999999999999998888888863
No 120
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=144.39 Aligned_cols=184 Identities=14% Similarity=0.197 Sum_probs=122.4
Q ss_pred eccccCCceEEEEEEEEccCCCCCceeccccc-----ccceEEEEEec--ceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-----IGKRIKEFVTS--TTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-----~~~~~~~~~~~--~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
...+.+|....|.|.+. .+.|.|.+.|.+. .+.+..+.... ....|.|.++..+|+|.|+|.|.| |...
T Consensus 11 ~~~v~eg~~v~l~c~~~--~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~ 86 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAE--KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKAT 86 (207)
T ss_dssp EEEECGGGCEEEEEECS--CCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEE
T ss_pred ceEEEeCCeEEEEEEEe--cCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeE
Confidence 34567899999999872 4579999999652 22333444333 445799999999999999999999 4444
Q ss_pred eeEEEEEecCCCCCCCCceeeeccCCeeEEEe---cCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-c
Q psy7039 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW---KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-P 383 (516)
Q Consensus 308 ~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W---~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p 383 (516)
....+.+........ +........ .| .+|. + .......+.+|+.+.|.|.+.|. |
T Consensus 87 ~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~P~------~---------~~~~~~~v~~g~~v~l~C~v~g~~P 145 (207)
T 3rbs_A 87 NHSTVVLVGDVFKKL--QKEAEFQRQ----EWIRKQGPH------F---------VEYLSWEVTGECNVLLKCKVANIKK 145 (207)
T ss_dssp EEEEEEECTHHHHHH--HHHHHHHHH----HHHHHTSSE------E---------EEEEEEEEETTTEEEEEEEEESCCT
T ss_pred EEEEEEEEccchhhh--ccccccccc----ccccCCCCc------e---------EecCCcEEcCCCcEEEEEEEeCCCC
Confidence 433332211000000 000000000 00 0000 0 00113678899999999999999 8
Q ss_pred CCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 384 KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 384 ~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.|.+.|++++..+..+.++. ...+...|.|.++.. .|+|.|+|.|.|..|....++.|+.
T Consensus 146 ~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 146 ETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp TCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCG-GGCEEEEEEEEETTEEEEEEEEECC
T ss_pred CCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCc-ccCEEEEEEEEcCCCEEEEEEEEec
Confidence 99999999999887655542 233445799999999 9999999999999999988887764
No 121
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.72 E-value=2e-16 Score=140.88 Aligned_cols=126 Identities=23% Similarity=0.275 Sum_probs=88.5
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCC-CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
...|.|.++..+|+|.|+|.+.|..+ .....+.|.|..+|....
T Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~----------------------------------- 105 (191)
T 1epf_A 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN----------------------------------- 105 (191)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEE-----------------------------------
T ss_pred ceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEec-----------------------------------
Confidence 34566777777777777777777653 334455566654432211
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+... .++... .+ ..|.|.++.. .|.|.|+|.|.|..
T Consensus 106 ---~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~-~~L~i~~~~~-~d~G~Y~C~a~n~~ 178 (191)
T 1epf_A 106 ---APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--SN-NYLQIRGIKK-TDEGTYRCEGRILA 178 (191)
T ss_dssp ---CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--TT-SCEEETTCCG-GGCEEEEEEEEEGG
T ss_pred ---CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--cC-CeEEECCCCh-hhCEEEEEEEEEec
Confidence 123456779999999999999999999999999887533 343332 22 2699999999 99999999999998
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|.......+.|
T Consensus 179 ~~~~~~~~i~v 189 (191)
T 1epf_A 179 RGEINFKDIQV 189 (191)
T ss_dssp GTEEEEEEEEE
T ss_pred ceeEEEEEEEE
Confidence 76655555544
No 122
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=151.99 Aligned_cols=209 Identities=10% Similarity=0.064 Sum_probs=133.6
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCccc--ceEEecCCeEEEEEeeeeccccccC
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLN--DVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~--~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..|.|.+++..|.|.|+|.|.|..|..........+.+..+ ..|.+. ..+. .+.+.+|+.+.|.|.+.
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p-~~~~~~-~~~~~~~~~v~~G~~v~l~C~~~-------- 120 (289)
T 3mjg_X 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDP-TVGFLP-NDAEELFIFLTEITEITIPCRVT-------- 120 (289)
T ss_dssp EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCT-TCCBCC-CCHHHHEEEESSCCCEEECCCBS--------
T ss_pred EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECC-CcCccc-CCCCcceEEeecCCeEEEEeEcC--------
Confidence 57999999999999999999998765332223333443321 223222 2222 27789999999999987
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCC--eeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSING--QVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
.|.+.++|++.+ ..+. . ... ... .+. ...|+|.|+|.+.|..+.....
T Consensus 121 -------------------~p~~~v~w~~~~~~~~~~--~--~~~--~~~-~~~----~~~d~G~Y~C~a~n~~~~~~s~ 170 (289)
T 3mjg_X 121 -------------------DPQLVVTLHEKKGDVALP--V--PYD--HQR-GFS----GIFEDRSYICKTTIGDREVDSD 170 (289)
T ss_dssp -------------------CTTSCEEEEESSCCSCCC--C--CEE--TTT-EEE----ECCCSSEEEEEEEETTEEEECC
T ss_pred -------------------CCCceEEEEeCCCCCccc--e--eec--CCc-Cee----eeccCcEEEEEEEeCCceeeee
Confidence 355677887754 3322 1 111 011 111 3579999999999766554322
Q ss_pred ---EEeec---eee----eeccccCCceEEEEEEEEccCCCCCceeccccc---ccc---eEEEEE----ecceeeEEEc
Q psy7039 226 ---AHVTG---TEF----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL---IGK---RIKEFV----TSTTASLNIK 285 (516)
Q Consensus 226 ---~~~~~---~~~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~---~~~---~~~~~~----~~~~~~l~i~ 285 (516)
+.+.. ..+ ....+..|+.+.|.|.+ .|.|.|.+.|... .+. ...... ......|.|.
T Consensus 171 ~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~ 247 (289)
T 3mjg_X 171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIV---IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIP 247 (289)
T ss_dssp CEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEE---ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEES
T ss_pred eEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEE---CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEc
Confidence 22211 111 22457789999999999 7789999999731 111 111111 2245789999
Q ss_pred cCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCC
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p 321 (516)
++..+|+|.|+|.|.|..|....++.|.|...+...
T Consensus 248 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 248 SAELEDSGTYTCNVTESVNDHQDEKAINITVVESGH 283 (289)
T ss_dssp SCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC---
T ss_pred ccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCc
Confidence 999999999999999999999999999998877654
No 123
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.72 E-value=1.3e-16 Score=145.45 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=65.1
Q ss_pred ccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCC--------CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 363 RDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP--------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~--------~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
....+..|+.+.|.|.+ .+.|.+.+.|++++..+.. ..++... ....|.|.++.. .|.|.|+|.|.|
T Consensus 116 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~-~d~G~Y~C~a~N 191 (217)
T 2vr9_A 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV---DGGNLLISNVEP-IDEGNYKCIAQN 191 (217)
T ss_dssp CCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE---TTTEEEESSCCS-TTCEEEEEEEEE
T ss_pred CccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec---CCCcEEEeeCCH-HHCeEEEEEEEc
Confidence 34567899999999999 8999999999999988763 2233322 123699999999 999999999999
Q ss_pred CCCceeEEEEEEEecCCCCC
Q psy7039 434 TVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~~p~~P 453 (516)
..|....+..+.+......+
T Consensus 192 ~~G~~~~~~~~lv~~~~~~~ 211 (217)
T 2vr9_A 192 LVGTRESSYAKLIVQVKAAA 211 (217)
T ss_dssp TTEEEECCCEEEEEC-----
T ss_pred ccceeccccEEEEEEeehhh
Confidence 99998777666565444333
No 124
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.71 E-value=2.6e-17 Score=160.30 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=145.7
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEe-cCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecC---CeEEEEEe-eeec
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAV-NAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAG---QSFSFDVK-EFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~-n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g---~~~~l~C~-~~~~ 141 (516)
...+|.|.+++..|.|.|+|.+. +..|... ....+.+. .+|.+. ......+.+.+| +.+.|.|. ..
T Consensus 90 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~---~~~~l~V~---~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~-- 161 (331)
T 3u83_A 90 TDGTIRLSRLELEDEGVYICEFATFPTGNRE---SQLNLTVM---AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN-- 161 (331)
T ss_dssp SBCCEEECSCCGGGCEEEEEEEEEETTEEEE---EEEEEEEE---BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE--
T ss_pred CCceEEEcccCcccCcEEEEEEEecCCCccE---EEEEEEEe---cCCcceeecCCCceeecCCCccceEEEEEEecC--
Confidence 45679999999999999999844 4334211 12222222 244432 134556778888 78999997 66
Q ss_pred cccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cC---CeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TK---SETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+.|.+.+.|+++....... ..... .+ ....|.|.++..+|+|.|+|.+.|
T Consensus 162 ------------------------~~p~~~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 215 (331)
T 3u83_A 162 ------------------------GKPPSVVSWETRLKGEAEY--QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNY 215 (331)
T ss_dssp ------------------------EBSCCEEEEEESSCCEEEE--EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred ------------------------CcCCceEEEEcCCCCcccc--ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEec
Confidence 8899999999853322110 01111 11 125789999999999999999999
Q ss_pred CCCceEEEEEeecee---e-----eeccccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEc-cC
Q psy7039 218 NLGTATASAHVTGTE---F-----TDNNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIK-NS 287 (516)
Q Consensus 218 ~~g~~~~~~~~~~~~---~-----~~~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~-~l 287 (516)
..|.......+.+.. + ....+.+|+...|.|.+ .|.|.|. +.|.+....... ........|.|. ++
T Consensus 216 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~---~g~p~p~~i~W~~~~~~~~~-~~~~~~~~L~i~~~v 291 (331)
T 3u83_A 216 HMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA---DANPPATEYHWTTLNGSLPK-GVEAQNRTLFFKGPI 291 (331)
T ss_dssp TTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEE---EEESCCCEEEEEETTBSCCT-TEEEETTEEEECSCC
T ss_pred CCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeC---cCCCCCCEEEEEECCCcccc-cceecCcEEEEeCCC
Confidence 988766655433321 1 12336789999999998 7889998 999652221000 011234689999 89
Q ss_pred CCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
..+|.|.|+|.|.|..|.....+.|.|...+..
T Consensus 292 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 324 (331)
T 3u83_A 292 NYSLAGTYICEATNPIGTRSGQVEVNITEAAAL 324 (331)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEECCBC----
T ss_pred ccccCeEEEEEEEeccccceEEEEEEEeccchh
Confidence 999999999999999999988888888876654
No 125
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.71 E-value=3.7e-16 Score=140.72 Aligned_cols=171 Identities=11% Similarity=0.043 Sum_probs=122.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-----eeeEEee-CCeeeccCCceEEeec
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-----LNHGWSI-NGQVCQIGGRADVQTT 192 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~i~W~~-~~~~~~~~~~~~~~~~ 192 (516)
.++..+.+.+|+.+.|.|.+. +.|. +.+.|++ ++.......+..+...
T Consensus 7 ~p~~~v~v~~G~~v~L~C~~~--------------------------~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~ 60 (202)
T 3bp6_B 7 APKEVYTVDVGSSVSLECDFD--------------------------RRECTELEGIRASLQKVENDTSLQSERATLLEE 60 (202)
T ss_dssp CSCSEEEEETTSCEEEEEEEC--------------------------TTC---CTTEEEEEEECC--CCCBCSSCEECGG
T ss_pred cCCcCEEEeCCCcEEEEEEec--------------------------CCCCCCccceEEEEEcCCCcccccCCceEEeec
Confidence 344568899999999999999 7776 8999999 4444444456555432
Q ss_pred C---CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee------eeeccccCCceEEEEEEEEccCCCCCceecc
Q psy7039 193 K---SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE------FTDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263 (516)
Q Consensus 193 ~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~------~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W 263 (516)
. ...+|.|.+++.+|+|.|+|.+.+..+.......+.+.. ........|..+.+.|.+ .|.|.|.+.|
T Consensus 61 ~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~---~g~P~p~v~W 137 (202)
T 3bp6_B 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA---RGYPLAEVSW 137 (202)
T ss_dssp GGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEE---EEBSCCEEEE
T ss_pred cccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEc---cccCCceEEE
Confidence 2 457999999999999999999999887665555443322 122245689999999999 7789999999
Q ss_pred cccccceEEEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 264 DALIGKRIKEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 264 ~~~~~~~~~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.+.......... .+....+.|.++...|.|.|+|.|.|..|.....+.|.|....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~~ 195 (202)
T 3bp6_B 138 QNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195 (202)
T ss_dssp TTCCSCCEEEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC----
T ss_pred EeCCCCccCceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCcC
Confidence 874332222111 2223456677899999999999999999998888887775543
No 126
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.71 E-value=2.1e-16 Score=143.17 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.+.|.++...|+|.|+|.+.|..|.. .....+.|...+....
T Consensus 73 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~------------------------------------- 115 (212)
T 2v9r_A 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR------------------------------------- 115 (212)
T ss_dssp SCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCS-------------------------------------
T ss_pred EEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccce-------------------------------------
Confidence 34566788999999999999988765 4466677665433211
Q ss_pred cccccEEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 360 LSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
..+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.......... . ..|.|.++.. .|.|.|+|.|.|..|..
T Consensus 116 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~-~--~~L~i~~~~~-~d~G~Y~C~a~N~~g~~ 191 (212)
T 2v9r_A 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR-G--GKLMITYTRK-SDAGKYVCVGTNMVGER 191 (212)
T ss_dssp BCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE-T--TEEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred eCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc-C--CeEEEeeCCH-hhCeeEEEEEecccCce
Confidence 12344678899999999999 899999999999998886543322222 2 3699999999 99999999999999985
Q ss_pred eE-EEEEEEecCCCCC
Q psy7039 439 SA-SCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~-s~~l~v~~~p~~P 453 (516)
.. .+.|.|..+|...
T Consensus 192 ~s~~~~l~V~~~P~~~ 207 (212)
T 2v9r_A 192 ESEVAELTVLERPSFV 207 (212)
T ss_dssp ECCCEEEEEEC-----
T ss_pred ecceEEEEEEeCchHh
Confidence 44 4889998776543
No 127
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=154.90 Aligned_cols=214 Identities=13% Similarity=0.023 Sum_probs=140.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
...+|.|.+++..|.|.|+|.|.|..|... ....+.+.. +|.+....+..+.+.+|+.+.|.|.+.
T Consensus 49 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~---~~~~l~V~~---~~~~~~~~~~~~~v~~g~~v~l~C~~~-------- 114 (292)
T 4dkd_C 49 SSSILSTNNATFQNTGTYRCTEPGDPLGGS---AAIHLYVKD---PARPWNVLAQEVVVFEDQDALLPCLLT-------- 114 (292)
T ss_dssp TEEEEEESSCCGGGCSCEEECCCC----CC---EEECCEECC---SSCCEEESCSEEEEETTSCEECCEEES--------
T ss_pred ceEEEEEcccccccCEEEEEEEccCCCCcc---eEEEEEEcC---ccccccccCCeEEEcCCCcEEEeeeCC--------
Confidence 356899999999999999999988766441 222333332 333222445578899999999999998
Q ss_pred ccccccccccCccceeecCcCc--eeeEEeeC-CeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPF--LNHGWSIN-GQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~--~~i~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
+ |. +.+.|+++ +..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..+....
T Consensus 115 ------------------~-~~~~~~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s 172 (292)
T 4dkd_C 115 ------------------D-PVLEAGVSLVRVRGRPLMRHTNYSFSP---WHGFTIHRAKFIQSQDYQCSALMGGRKVMS 172 (292)
T ss_dssp ------------------S-GGGGSSEEEEEGGGCCCCSSCCEECCS---SSCCEETTCCGGGCSEEEEEECSTTSCEEC
T ss_pred ------------------C-CCcceeEEEEecCCCccccCCcccccC---CceEEECCCCHHHCeEEEEEEEeCCCceeE
Confidence 6 44 78999987 55554444444332 234999999999999999999987664422
Q ss_pred -EEE--eec-----eee----eeccccCCceEEEEEEEEccCCCC-Cceeccccccc---ceEEEEE----ecceeeEEE
Q psy7039 225 -SAH--VTG-----TEF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDALIG---KRIKEFV----TSTTASLNI 284 (516)
Q Consensus 225 -~~~--~~~-----~~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~---~~~~~~~----~~~~~~l~i 284 (516)
... +.. ..+ ....+..|+.+.+.|.+. |.+ ++.+.|.+... ....... ......|.|
T Consensus 173 ~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i 249 (292)
T 4dkd_C 173 ISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSAS---SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249 (292)
T ss_dssp CCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEE---ESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEec---CCCCceEEEEeCCCcccccCccceeccceeeeEEEEEE
Confidence 222 221 111 122346899999999994 444 45677855211 1111111 123458999
Q ss_pred ccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.++..+|+|.|+|.|.|..|..+.++.|.|......
T Consensus 250 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~ 285 (292)
T 4dkd_C 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285 (292)
T ss_dssp SSCCTTSCEEEEEEEECSSCEEEEEEEECC------
T ss_pred CccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCc
Confidence 999999999999999999999988888888776544
No 128
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=166.47 Aligned_cols=357 Identities=14% Similarity=0.110 Sum_probs=197.4
Q ss_pred CCCCCCcceEE--EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE--eecCCcEEEeCCCcCCCeEEEE
Q psy7039 12 DEPGKPTDLEA--TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV--VPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 12 ~~p~~p~~l~~--~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~--~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
.+|+||.++.+ ...+++++.|+|.+|.. .+..+.+|+|+|+..++ .|..... .....+++.|.+|.+++.|.|+
T Consensus 197 ~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~-~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 275 (589)
T 3l5h_A 197 VKPNPPHNLSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275 (589)
T ss_dssp EECCCCCSCEEECTTTCTTCEEEECCCCGG-GGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEE
T ss_pred EEcCCCceEEEEecCCCCCeEEEEeCCCCC-CCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEE
Confidence 47999999999 45788999999999854 34578999999999765 7865432 2335689999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceE-E---ecCCeEEEEEeeeeccccccCccccccccccCccce
Q psy7039 87 VRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVK-I---KAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGW 162 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~-v---~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (516)
|+|.|..|.+.++..+..+...+...+|. ..+.... + .....-.+.+.|. ++++..+.|.-.++
T Consensus 276 V~a~~~~g~g~~S~~S~~~~~~T~~~~P~---~~p~~~~~v~~~~~~~~~~v~l~W~-----p~~~~~~~g~i~~Y---- 343 (589)
T 3l5h_A 276 IRCMKEDGKGYWSDWSEEASGITYEDRPS---KAPSFWYKIDPSHTQGYRTVQLVWK-----TLPPFEANGKILDY---- 343 (589)
T ss_dssp EEEEESSSCSCCCCCCCCBCCCCCCCCCC---SCCCEEEECCSCSSTTSCCEEEEEC-----CCCTTTSSSCCCEE----
T ss_pred EEEEeCCCCCccCCCCCccccccCccCCC---CCCcEEEEeecCcCCCcceEEEEEe-----eCCchhccCceeeE----
Confidence 99999999887776665555444444442 1222111 1 1112223333333 00011111111111
Q ss_pred eecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeecccc-CC
Q psy7039 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVH-EG 241 (516)
Q Consensus 163 ~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~-~g 241 (516)
.+.|...+.... .. ......+.+ +.....+.+++.+.|..|....+... +...... +.
T Consensus 344 --------~v~~~~~~~~~~-----~~--~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~----~~~~~~~~~~ 402 (589)
T 3l5h_A 344 --------EVTLTRWKSHLQ-----NY--TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLT----IPACDFQATH 402 (589)
T ss_dssp --------EEEECCTTSCCC-----BC--CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCC----CCCTTCCCCS
T ss_pred --------EEEEecCCCCce-----ee--ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEE----eecccccCCC
Confidence 222222111100 00 111122222 44666777888888877765432110 0000000 00
Q ss_pred ceEEEEEEEEccCCCCCceecccccc----cceEEEE---------------EecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 242 KAYEYRVSAVNAAGTEKPKISLDALI----GKRIKEF---------------VTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 242 ~~~~~~~~~~~~~g~p~p~i~W~~~~----~~~~~~~---------------~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
-...+.+.. . .....+.|.... +..+... .......+.+.+|.+...|.|++.|.|.
T Consensus 403 p~~~l~~~~---~-~~si~l~W~~p~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~ 478 (589)
T 3l5h_A 403 PVMDLKAFP---K-DNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYA 478 (589)
T ss_dssp CCCSCEEEE---C-SSSEEEECCCCSSCCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEEEEECBEET
T ss_pred CcceEEEEE---C-CCeEEEEEECCCCCccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEEEEEEEEeC
Confidence 001112221 1 123345553310 1000000 0122335566899999999999999998
Q ss_pred CCCcceeEEEEEecC---CCCCCCCceeeeccCCeeEEEecCCC-CCCCCceeeccccccccccccEEEEcCCeEEEEEE
Q psy7039 303 YGIDMADIEVVVVSK---PGPPTGPIDYTTVTPESVSMSWKPPV-DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP 378 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~---p~~p~~p~~~~~~~~~~~~l~W~~p~-~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~ 378 (516)
.|..... .+.+... |..|. .+.+..++.+++.|+|.+|. +..+..|.+|.
T Consensus 479 ~g~g~~~-~~~~~t~~~~P~~pp-~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~------------------------ 532 (589)
T 3l5h_A 479 DGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYT------------------------ 532 (589)
T ss_dssp TEECCCE-EEEEESSCCCCSSCC-CCCEECCCSSCBEEBCCCCCHHHHCSCEEEEE------------------------
T ss_pred CcccCCE-EEEEEeccCCCCCCC-eEEEeecccceEEEEecCCCHHHcCccceeEE------------------------
Confidence 8876543 2333333 32222 27788889999999999852 33344677772
Q ss_pred EeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 379 ~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
|.|...+. .............++|.+|.+ +..|.|++.|.|..| +..+..+.++
T Consensus 533 --------v~~~~~~~-----~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~n~~G-~~~S~~~~~~ 586 (589)
T 3l5h_A 533 --------IFYRTIIG-----NETAVNVDSSHTEYTLSSLTS-DTLYMVRMAAYTDEG-GKDGPEFTFT 586 (589)
T ss_dssp --------ECCBCSSC-----CCCCEEECTTCCBCCBCSCCS-SCCEECCEEEEETTE-EEECCCCEEC
T ss_pred --------EEEEeCCC-----CeEEEEeCCcccEEEecCCCC-CCEEEEEEEEEeCCC-CCCCCCeEEe
Confidence 11111110 001122334445788999999 999999999999999 6555555544
No 129
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.69 E-value=1.4e-16 Score=141.16 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=122.8
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc--------------CCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------GGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..|+.
T Consensus 4 ~v~~~~G~~v~L~C~~~--------------------------~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 57 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTAS--------------------------QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD 57 (184)
T ss_dssp EEEEETTSCEEECCBCS--------------------------SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEE
T ss_pred cEEEeCCCCEEEEEEEc--------------------------CCCceEEEEEeCCccceEEecCceEecCChhhCCccc
Confidence 46789999999999999 889999999998753211 12333
Q ss_pred Eee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccc
Q psy7039 189 VQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA 265 (516)
Q Consensus 189 ~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~ 265 (516)
... ..+..+|.|.+++.+|+|.|+|.+.+..+.....+... .......+.+|+.+.+.|.+ .|.|.|.+.|.+
T Consensus 58 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~l~V~~~-~~~~~~~v~~g~~~~l~C~~---~~~p~~~v~W~~ 133 (184)
T 2ny1_B 58 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGL-TANSDTHLLQGQSLTLTLES---PPGSSPSVQCRS 133 (184)
T ss_dssp CCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEEEEEEEEEEE-EESSCSEEETTCCEEEEEEC---CTTCCCEEEEEC
T ss_pred cccccccCCeEEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEe-cCCCCceeecCCCEEEEEEc---CCCCCCEEEEEe
Confidence 321 23356799999999999999999998766443332211 11233467889999999988 677999999976
Q ss_pred cccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
..... ......|.|.++..+|+|.|+|.|.|..+.....+.|.|...|.+
T Consensus 134 ~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~ 183 (184)
T 2ny1_B 134 PRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183 (184)
T ss_dssp TTSCE-----EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred CCCcc-----ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence 43322 235678999999999999999999999988888999999887754
No 130
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.69 E-value=1.9e-15 Score=146.91 Aligned_cols=208 Identities=9% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCC--CCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEA--SKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~--s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...+|.|.+++..|.|.|+|.|.|..+.... ......+.+...+.+|.+. . ....+.+|+.+.|.|.+.
T Consensus 72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~--~~~~~~~g~~~~l~C~~~------ 142 (327)
T 2wng_A 72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-G--PAARATPQHTVSFTCESH------ 142 (327)
T ss_dssp CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-C--CSSCBCTTCEEEEEEEEE------
T ss_pred ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-c--cccccCCCCEEEEEEEEe------
Confidence 4568999999999999999999997553110 0112233443444455544 1 235678999999999999
Q ss_pred cCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEee-c-C---CeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 146 KSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQT-T-K---SETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~-~-~---~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+.|.+ .+.|++++..+.......... . + ..+.|.|.....+|.|.|+|.+.|.
T Consensus 143 --------------------g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~ 202 (327)
T 2wng_A 143 --------------------GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV 202 (327)
T ss_dssp --------------------EEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECT
T ss_pred --------------------CccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEecc
Confidence 76654 899999998886443221111 1 1 1236788877778889999999998
Q ss_pred CCce---EEEEEeec-------eeeeeccccCCceEEEEEEEEccCCC-CCc-eecccccccceEE------EEEecc--
Q psy7039 219 LGTA---TASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK------EFVTST-- 278 (516)
Q Consensus 219 ~g~~---~~~~~~~~-------~~~~~~~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~------~~~~~~-- 278 (516)
.+.. .....+.. .......+.+|..+.|.|.+ .|. |++ .+.|.+.. ..+. ......
T Consensus 203 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~---~g~~p~~~~v~W~k~g-~~l~~~~~~~~~~~~~g~ 278 (327)
T 2wng_A 203 TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQV---RKFYPQRLQLTWLENG-NVSRTETASTVTENKDGT 278 (327)
T ss_dssp TSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEE---EEEBSSCEEEEEEETT-EEEEEEECCSCEECTTSC
T ss_pred ccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEE---ccccCCCcEEEEEECC-eEccCcccCceEECCCCc
Confidence 7653 22332211 11122237789999999999 564 444 79997532 1111 111111
Q ss_pred ---eeeEEEccCCCCCceEEEEEEEecCCCcce
Q psy7039 279 ---TASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308 (516)
Q Consensus 279 ---~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~ 308 (516)
...|.|..+..+|.|.|+|.|.|..|....
T Consensus 279 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s 311 (327)
T 2wng_A 279 YNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS 311 (327)
T ss_dssp EEEEEEEEC-------CCEEEEEEEETTCCCEE
T ss_pred EEEEEEEEEccccccCCCEEEEEEEeCCCCCch
Confidence 145788889999999999999999887543
No 131
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.69 E-value=3.3e-16 Score=141.41 Aligned_cols=168 Identities=12% Similarity=0.058 Sum_probs=120.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~~~~~~ 191 (516)
.|.|. ..+....+.+|+.+.|.|.+. +.|.+. +.|++++..+...
T Consensus 7 ~p~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~~v~W~k~g~~l~~~------- 52 (204)
T 3sgj_C 7 KAVVF-LEPQWYRVLEKDSVTLKCQGA--------------------------YSPEDQSTQWFHNESLISSQ------- 52 (204)
T ss_dssp BCEEE-EESCCSEEETTCCEEEEEECC--------------------------SSSSCCCEEEEETTEEESCC-------
T ss_pred CCeEE-EcCCCeEEECCCCEEEEEcCC--------------------------CCCCCcEEEEEECCEEcccC-------
Confidence 34444 344457899999999999999 777665 9999999887533
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece----eeeeccccCCceEEEEEEEEccCCCCCceecccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI 267 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~ 267 (516)
...|.|.+++.+|+|.|+|.+.|........+.+... ......+.+|+.+.+.|.+. .+.|.+.+.|.+..
T Consensus 53 ---~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~~p~~~v~W~k~g 127 (204)
T 3sgj_C 53 ---ASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSW--KNTALHKVTYLQNG 127 (204)
T ss_dssp ---SSEEEESSCCGGGCEEEEEEETTSBCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEG--GGCCCEEEEEEETT
T ss_pred ---ccEEEEecccccCCEEEEEEeCCCcccccEEEEEecCceEecCCceeEeCCCcEEEEEEec--CCCCCceEEEEECC
Confidence 2689999999999999999998865555444443321 11234567899999999882 34466889996532
Q ss_pred cceEEEEEecceeeEEEccCCCCCceEEEEEEEec-CCCcceeEEEEEecCCCCCC
Q psy7039 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPT 322 (516)
Q Consensus 268 ~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~-~g~~~~~~~l~v~~~p~~p~ 322 (516)
.. +........|.|.++..+|+|.|+|.|.|. .+..+..+.|.|...+..|.
T Consensus 128 ~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~ 180 (204)
T 3sgj_C 128 KG---RKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180 (204)
T ss_dssp EE---EEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred cE---eecccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence 22 122334678999999999999999999994 55567778888887766553
No 132
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.69 E-value=3.5e-14 Score=151.75 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=173.8
Q ss_pred CCCCCCcceEEEee--eCC---eeEEEecCCCCCCCCceeceEEEEEeC-C------C-CeEEeEEeecCCcEEEeCCCc
Q psy7039 12 DEPGKPTDLEATDW--DKD---HVDLQWTPPISDGGSPITGYVVEMKDK-T------G-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 12 ~~p~~p~~l~~~~~--~~~---~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~------~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
.+|++|.+|++..+ +++ +|.|+|.+|. +.+++|.+|.|+|+.. + . .|... .+....++++|.+|.
T Consensus 265 ~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~-~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~l~~L~ 342 (680)
T 1zlg_A 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE-EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRK-TTDGFQNSVILEKLQ 342 (680)
T ss_pred CCCCCCCceEeeeeeecCCCceEEEEEecCCC-CCCCceeEEEEEEEecccccccCCccceEEE-EEcCCeeEEEeCCCC
Confidence 58999999999988 788 9999999985 3457899999999821 1 1 34443 344456899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecC--CeEEE---------EEeeeeccccccC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAG--QSFSF---------DVKEFRELSYTKS 147 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g--~~~~l---------~C~~~~~~~~~~~ 147 (516)
+++.|.|+|+|.|..|.+.++.....+...+...+|. +..+.+..- ..+.| ...+. +
T Consensus 343 p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~-----p~~l~~~~~s~tsi~lp~~~~~~~~~l~W~-------~ 410 (680)
T 1zlg_A 343 PDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN-----KEQLVKTRKGGIQTQLPFQRRRPTRPLEVG-------A 410 (680)
T ss_pred CCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC-----ccccccccccCccccccccccCCCcccccc-------C
Confidence 9999999999999999988776644455444444442 112222111 11211 01222 0
Q ss_pred ccccccccccCccceeecCcC---ceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 148 PLRALGVRANSTKGWVKLSEP---FLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
|.. .+......+.|-..+.+ .-.+.|.......... .............+.|.++.....+.++..+.|..|...
T Consensus 411 P~~-~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~ 489 (680)
T 1zlg_A 411 PFY-QDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK 489 (680)
T ss_pred Ccc-cCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCC
Confidence 100 00111222222221111 1122232110000000 000111123345778888988888888888888877321
Q ss_pred EEE---Eeec---------eeeee--c------c-ccCCceEE--EEEEEEccCCCCCceecccccc----c--ceEEEE
Q psy7039 224 ASA---HVTG---------TEFTD--N------N-VHEGKAYE--YRVSAVNAAGTEKPKISLDALI----G--KRIKEF 274 (516)
Q Consensus 224 ~~~---~~~~---------~~~~~--~------~-l~~g~~~~--~~~~~~~~~g~p~p~i~W~~~~----~--~~~~~~ 274 (516)
... .... ..+.. . . +.+-..+. +.+.. .... ..+.|.... + ..+.+.
T Consensus 490 ~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~---~~~t-i~lsW~pP~~~~ng~I~gY~V~ 565 (680)
T 1zlg_A 490 AEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQD---VNIT-GHFSWKMAKANLYQPMTGFQVT 565 (680)
T ss_pred ccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEec---cCce-EEEEecCCCCCCCCCceeEEEE
Confidence 100 0000 00000 0 0 00001100 12211 1111 455564321 0 011111
Q ss_pred E-----------------------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCC--ceeee
Q psy7039 275 V-----------------------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP--IDYTT 329 (516)
Q Consensus 275 ~-----------------------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p--~~~~~ 329 (516)
. ......+.|.+|.+...|.+++.|.|..|.+.. ..+.+.....+|..| +.+..
T Consensus 566 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~P~~P~~l~v~~ 644 (680)
T 1zlg_A 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELPPSSAHRSHLKH 644 (680)
T ss_pred EEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCCCCCCCCCeEEe
Confidence 1 123457889999999999999999999887765 444555544444433 45544
Q ss_pred ccCCeeEEEecCCCCCCCCceeecc
Q psy7039 330 VTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 330 ~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
.. .|+|++|...+|.+|.+|.
T Consensus 645 ~~----~l~W~pP~~~~G~~I~~~~ 665 (680)
T 1zlg_A 645 RH----PHHYKPSPERYGKPIPNPL 665 (680)
T ss_pred cc----ceeECCCCCCCCCccceee
Confidence 33 8999999999999999883
No 133
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.68 E-value=3.5e-16 Score=141.64 Aligned_cols=171 Identities=21% Similarity=0.315 Sum_probs=125.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEEEE-------------EecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF-------------VTSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~-------------~~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
..+.+|+.+.|.|.+ .|.|.+.+.|.+......... .......|.|.+++..|+|.|+|.+.|.
T Consensus 11 ~~v~~G~~v~L~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~ 87 (212)
T 1f97_A 11 VQVPENESIKLTCTY---SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEE 87 (212)
T ss_dssp EEEETTCCEEEECEE---ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEET
T ss_pred eEEEcCCCEEEEeEe---CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEcc
Confidence 346789999999998 577899999976332211000 0112278999999999999999999998
Q ss_pred CC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEE-E
Q psy7039 303 YG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP-F 379 (516)
Q Consensus 303 ~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~-~ 379 (516)
.| .....+.|.|..+|..+.. .....+..|+.+.|.|. +
T Consensus 88 ~g~~~~~~~~~l~V~~~p~~~~~--------------------------------------~~~~~~~~g~~~~l~C~~~ 129 (212)
T 1f97_A 88 GGQNYGEVSIHLTVLVPPSKPTI--------------------------------------SVPSSVTIGNRAVLTCSEH 129 (212)
T ss_dssp TSSSEEEEEEEEEEEBCCCCCEE--------------------------------------ECCSEEETTSCEEEEEECS
T ss_pred CCCcccEEEEEEEEEcCCCCccc--------------------------------------CCccccCCCCeEEEEEEcc
Confidence 77 3455677777776654321 12246789999999999 7
Q ss_pred eeecCCceEEEECCe-ecCCCCc-------eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce--eEEEEEEEec
Q psy7039 380 SGRPKPTPIWTVNGD-EVSPDGR-------IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--SASCKVYVVD 448 (516)
Q Consensus 380 ~g~p~~~i~W~~~~~-~l~~~~~-------~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~--s~s~~l~v~~ 448 (516)
.+.|.+.+.|++++. .+..... ...........|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 130 ~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA-FDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCG-GGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecCh-hhCcEEEEEEccccCCccccceEEEEEEE
Confidence 999999999999998 7754322 1122333445799999999 99999999999999987 5667777764
No 134
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.68 E-value=1.4e-15 Score=147.17 Aligned_cols=251 Identities=12% Similarity=0.065 Sum_probs=147.9
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCC--CCc
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASK--PTA 103 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~--~~~ 103 (516)
....+.|.+.... . ... +.|...+...............|.|.+++..|.|.|+|.|.|..+....+. ...
T Consensus 37 ~G~~v~L~C~~~~---~--~~~--~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~ 109 (316)
T 3vh8_G 37 RGGHVTLRCHYRH---R--FNN--FMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPV 109 (316)
T ss_dssp TTSCEEEEEEBTT---B--CCS--EEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCE
T ss_pred CCCCEEEEEEccC---C--Cce--EEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcE
Confidence 5667889888742 1 122 234444431100001112467899999999999999999987544322221 223
Q ss_pred ceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc
Q psy7039 104 PIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI 183 (516)
Q Consensus 104 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~ 183 (516)
.+.+.....+|.+. ..+.. .+.+|+.+.|.|.+. + +.+.+.|++++..+..
T Consensus 110 ~l~V~~~~~~p~~~-~~~~~-~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~ 160 (316)
T 3vh8_G 110 VIMVTGNHRKPSLL-AHPGP-LVKSGERVILQCWSD--------------------------I-MFEHFFLHKEGISKDP 160 (316)
T ss_dssp EEEEECSSCCCEEE-EESCS-EEETTCCEEEEEEES--------------------------S-CCSEEEEEETTCCSCC
T ss_pred EEEEecCCCCCeEE-ecCCC-ccCCCCeEEEEEcCC--------------------------C-CCcEEEEEECCCcccc
Confidence 34443333456655 33333 388999999999987 4 4568899998876643
Q ss_pred CCce-EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-------eEEEEEeec----eee---eeccccCCceEEEEE
Q psy7039 184 GGRA-DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-------ATASAHVTG----TEF---TDNNVHEGKAYEYRV 248 (516)
Q Consensus 184 ~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-------~~~~~~~~~----~~~---~~~~l~~g~~~~~~~ 248 (516)
.... ..........|.|.+++.+|+|.|+|.+.|..|. ....+.+.. ..+ ....+.+|+.+.|.|
T Consensus 161 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C 240 (316)
T 3vh8_G 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC 240 (316)
T ss_dssp EEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEE
T ss_pred ceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEE
Confidence 2211 1111234578999999999999999999998763 222232221 111 122567899999999
Q ss_pred EEEccCCCCCceecccccccceEE-E---EE--ecceeeEEEccCCCCCceEEEEEEEecCCC-----cceeEEEEEecC
Q psy7039 249 SAVNAAGTEKPKISLDALIGKRIK-E---FV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGI-----DMADIEVVVVSK 317 (516)
Q Consensus 249 ~~~~~~g~p~p~i~W~~~~~~~~~-~---~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~ 317 (516)
.+ . .+.+.+.|.+....... . .. ......|.|.+++ |+|.|+|.|.|..+. .+..+.|.|...
T Consensus 241 ~~---~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 241 SS---R-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp EE---S-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred EC---C-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 98 3 36788999653221111 1 01 1123689999999 999999999997653 344566666654
Q ss_pred C
Q psy7039 318 P 318 (516)
Q Consensus 318 p 318 (516)
|
T Consensus 315 p 315 (316)
T 3vh8_G 315 P 315 (316)
T ss_dssp -
T ss_pred C
Confidence 4
No 135
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.68 E-value=2.5e-15 Score=144.58 Aligned_cols=223 Identities=11% Similarity=0.088 Sum_probs=140.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-------cCceeeEEeeCCeeeccCCceEEeecC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-------EPFLNHGWSINGQVCQIGGRADVQTTK 193 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~~~i~W~~~~~~~~~~~~~~~~~~~ 193 (516)
+.+..+..|+++.|.|.+. + .|.+.|.|++++..+... ++.+. .+
T Consensus 11 P~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~ 62 (303)
T 1i1r_A 11 PESPVVQLHSNFTAVCVLK--------------------------EKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NR 62 (303)
T ss_dssp SSSCEEETTCCEEEEEEEC--------------------------HHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ET
T ss_pred cCCceEeCCCCEEEEEEEC--------------------------CccccccCCChhheEEEECCEECChh-heeee-CC
Confidence 3457789999999999998 5 378999999999887543 33332 33
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccccccceEEE
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE 273 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~ 273 (516)
..+.|.|.++...+ |.|.|.+.+. |.....
T Consensus 63 ~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~------------------------------------------------ 92 (303)
T 1i1r_A 63 TASSVTFTDIASLN-IQLTCNILTF-GQLEQN------------------------------------------------ 92 (303)
T ss_dssp TEEEEEECSCCCSE-EEEEEEEEET-TTEEEE------------------------------------------------
T ss_pred cEEEEEEcCcCCCc-eEEEEecccC-CCcceE------------------------------------------------
Confidence 35577788777763 7788877542 211100
Q ss_pred EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 274 ~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
...+.+.+..+|.+|.. +.+...+..++.|+|.+|.+.+. +++|
T Consensus 93 ---------------------------------~~~~~l~v~~~P~~P~~-l~~~~~~~~~v~l~W~~~~~~~~--~~~Y 136 (303)
T 1i1r_A 93 ---------------------------------VYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNF 136 (303)
T ss_dssp ---------------------------------EEEEEEEEECCCCCCEE-EEEEEETTSCCEEEEECCSCCSS--CCEE
T ss_pred ---------------------------------EEEEEEeccCCCCCCee-eEEEECCCCcEEEEccCCCCCCC--CcCE
Confidence 01122334444444433 55566667889999999877542 3455
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCc-eecCCceEEEEEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA-KRATDSGSYTIQLV 432 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~ 432 (516)
. +.+. ..+... ... .........+.|.++ .+ ...|.|+|.|.
T Consensus 137 ~--------------------v~~~------------~~~~~~---~~~-~~~~~~~~~~~i~~L~~p-~t~Y~f~V~A~ 179 (303)
T 1i1r_A 137 T--------------------LKSE------------WATHKF---ADC-KAKRDTPTSCTVDYSTVY-FVNIEVWVEAE 179 (303)
T ss_dssp E--------------------EEEE------------ETTEEC---CCE-ECCSSCTTEEECSSCCCT-TSCEEEEEEEE
T ss_pred E--------------------EEEE------------ecCCCC---ccC-CCcCCCceEEEECCcCcc-cccEEEEEEEE
Confidence 1 1111 111000 000 001122346889999 88 99999999999
Q ss_pred cCCCceeE-EEEEEEe--cCCCCCCCCcccccc--cCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 433 NTVGSDSA-SCKVYVV--DKPSPPQGPLDVSDI--TPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 433 n~~G~~s~-s~~l~v~--~~p~~P~~~l~~~~~--~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..|.... ...+... .+|.+| ..+.+..+ +.+++.|+|++|.. .++.+.+|.|+|+..+...
T Consensus 180 N~~G~~~s~~~~~~~~~~~~p~pP-~~~~v~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~y~~~~~~~ 246 (303)
T 1i1r_A 180 NALGKVTSDHINFDPVYKVKPNPP-HNLSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAST 246 (303)
T ss_dssp ETTEEEECCCEEECGGGGEECCCC-EEEEEECCSSSSSCEEEEEECCGG-GGTSCEEEEEEEEETTCSS
T ss_pred cCCCCcccCCEEECHHHeEecCCC-cceEEEEecCCCCEEEEEECCCCC-CCcccEEEEEEEEeCCCCC
Confidence 99998642 2222221 357777 66776544 67899999999864 4568999999999986544
No 136
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=139.46 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=64.8
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSAS 441 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s 441 (516)
....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.++.. .|.|.|+|.|.|..|. .+..
T Consensus 126 ~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~ 195 (218)
T 3k0w_A 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDL-EHQGTYWCHVYNDRDSQDSKK 195 (218)
T ss_dssp CCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS---------SEEEESSCCG-GGCEEEEEEEECSSCEEECCC
T ss_pred CceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC---------CEEEEeecCh-hcCEEEEEEEEcCCCCceeee
Confidence 446788999999999999999999999999988754322 3699999999 9999999999999887 6667
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|.|...+
T Consensus 196 ~~l~V~~~~ 204 (218)
T 3k0w_A 196 VEIIIDELN 204 (218)
T ss_dssp EEEEECC--
T ss_pred EEEEEeCCc
Confidence 788886543
No 137
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-14 Score=149.16 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=154.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeC-Ce-eec--cCCceEEeec-
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSIN-GQ-VCQ--IGGRADVQTT- 192 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~-~~-~~~--~~~~~~~~~~- 192 (516)
.+..+.+.+|+.+.|.|.+.+ + +. ....+.+.|++.. .....+..... +. ... ...|+.+..+
T Consensus 6 qp~~v~v~~G~~v~L~C~~~~---~---~~----~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~ 75 (512)
T 1zvo_C 6 ESGPGLVKPSETLSLTCIVSG---G---PI----RRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDT 75 (512)
T ss_pred CCCCEEEcCCCCEEEEEEEcc---c---cc----CCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecC
Confidence 345688999999999999981 0 00 0001334444431 11101111110 00 011 1256665532
Q ss_pred -CCeeEEEeccCCCCCCeeEEEEEEcCCC----------c-----eEEEEEeec-----ee-eeecc----ccCCceEEE
Q psy7039 193 -KSETVLDIPFCSRSDTGHYSLTLENNLG----------T-----ATASAHVTG-----TE-FTDNN----VHEGKAYEY 246 (516)
Q Consensus 193 -~~~~~l~i~~~~~~d~g~Y~c~~~~~~g----------~-----~~~~~~~~~-----~~-~~~~~----l~~g~~~~~ 246 (516)
....+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. .. +.... ...+..+.+
T Consensus 76 ~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L 155 (512)
T 1zvo_C 76 SRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVL 155 (512)
T ss_pred CCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEE
Confidence 3457999999999999999999987642 0 111122211 11 11110 123578899
Q ss_pred EEEEEccCCC-CCc-eecccccccceE-E----EEE-ec---ceeeEEEccCCCCCceEEEEEEEecCCCcceeE-----
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKRI-K----EFV-TS---TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI----- 310 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~~-~----~~~-~~---~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~----- 310 (516)
.|.+ .|. |.| .+.|.+...... . ... .+ ....|.|...... .|.|+|.|.|..+......
T Consensus 156 ~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~ 231 (512)
T 1zvo_C 156 ACLI---TGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPE 231 (512)
T ss_pred EEEE---EeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCC
Confidence 9998 454 655 899976322110 0 000 01 1235778777766 8999999999988755433
Q ss_pred ------EEEEecCCCCCCCCc-eeee-------ccCCeeEEEecCCC---CCCCCceee-----ccccccccccccEEEE
Q psy7039 311 ------EVVVVSKPGPPTGPI-DYTT-------VTPESVSMSWKPPV---DDGGTPITG-----APKITSDLSIRDMTVL 368 (516)
Q Consensus 311 ------~l~v~~~p~~p~~p~-~~~~-------~~~~~~~l~W~~p~---~~~~~~i~~-----y~~~~~~~~~~~~~v~ 368 (516)
.+.+..+|... ..+ .++. -.-.+...+|.... .+.+..|.. ..+......+....+.
T Consensus 232 ~~~~~~~v~l~~pp~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~ 310 (512)
T 1zvo_C 232 SPKAQASSVPTAQPQAE-GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLW 310 (512)
T ss_pred CCCcCCEEEEeCCCchh-ccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhc
Confidence 12222111100 000 0000 00000011221100 000000000 0000000111222356
Q ss_pred cCCeEEEEEEEeeecCC--ceEEEECCeecCCCCce-EEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 369 AGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRI-KFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~-~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.|+.+.|.|.+.|..++ .|.|++++..+...... ......+ .+.|.|..+.. .|.|.|+|.|.|..+...
T Consensus 311 ~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~-~d~g~y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW-NAGTSVTCTLNHPSLPPQ 388 (512)
T ss_pred cCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHh-cCCCeEEEEEEeCCCCCC
Confidence 79999999999886443 89999999875421100 0111111 24689988888 899999999999987653
No 138
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.67 E-value=7.4e-14 Score=138.01 Aligned_cols=81 Identities=20% Similarity=0.396 Sum_probs=66.1
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
|.+|.+|.+..++++++.|+|.+|. +..+.+|+|+++..++ .|... .......++.|.+|.+++.|.|+|+|.|
T Consensus 95 ~~~p~~l~~~~~~~~si~l~W~~p~---~~~~~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~~ 170 (368)
T 1fnf_A 95 VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVLTNLLPGTEYVVSVSSVY 170 (368)
T ss_dssp CCCCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEE-EECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CcCCceeEEEEcCCCeEEEEeeCCC---CCCCcEEEEEEEECCCCCccEEE-EcCCCcceEEecCCCCCCEEEEEEEEEe
Confidence 3489999999899999999999973 2468999999998554 45443 3345788999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 171 ~~g~s~~ 177 (368)
T 1fnf_A 171 EQHESTP 177 (368)
T ss_dssp TTEECCC
T ss_pred CCCCCCC
Confidence 8886543
No 139
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.67 E-value=2e-16 Score=142.95 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=61.8
Q ss_pred EEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCce-------EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 365 MTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRI-------KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~-------~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
..+..|+.+.|.|.+ .+.|.+.+.|++++..+...... ..........|.|.++.. .|.|.|+|.|.|..|
T Consensus 117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g 195 (209)
T 1nbq_A 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYG 195 (209)
T ss_dssp SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG-GGCCCEEEEEECSSS
T ss_pred cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccc-cCCeEEEEEEeCCcC
Confidence 357889999999997 89999999999999877543221 111122345799999999 999999999999999
Q ss_pred ce--eEEEEEEE
Q psy7039 437 SD--SASCKVYV 446 (516)
Q Consensus 437 ~~--s~s~~l~v 446 (516)
.. +..+.|.|
T Consensus 196 ~~~~s~~v~l~V 207 (209)
T 1nbq_A 196 TPMTSNAVRMEA 207 (209)
T ss_dssp CCEECCCBCCEE
T ss_pred cccccccEEEEE
Confidence 87 44444544
No 140
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.67 E-value=2.7e-15 Score=132.76 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=121.1
Q ss_pred eccccCCceEEEEEEEEccCCCCCc--eecccccccceEEE-EEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKP--KISLDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~~~~~~-~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
...+.+|+.+.|.|.+ .|.+.| .+.|.+.. ..... ........|.|. +..|+|.|+|.|.| .....+.
T Consensus 7 ~~~v~~G~~v~l~C~~---~~~~~p~~~~~W~k~~-~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~ 77 (184)
T 3b5h_A 7 TTVEDLGSKILLTCSL---NDSATEVTGHRWLKGG-VVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLP---EPMGTAN 77 (184)
T ss_dssp EEEEEETTEEEEEEEE---ESCSSCCCEEEEESSS-EEEECTTCCCSEEEEEEC--GGGCCEEEEEEEES---TTSCEEE
T ss_pred EEEEecCCCEEEEEEC---CCCCCCceEEEEEeCC-EEeecccccCCcEEEEEe--chhhCeEEEEEEEC---CcCcEEE
Confidence 3456789999999998 565666 88997622 11110 011223456666 68999999999998 2335667
Q ss_pred EEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec-CCceEEE
Q psy7039 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP-KPTPIWT 390 (516)
Q Consensus 312 l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p-~~~i~W~ 390 (516)
|.|...|.... ......+..|+.+.|.|.+.|.| .+.+.|+
T Consensus 78 l~V~~~P~~~~--------------------------------------~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~ 119 (184)
T 3b5h_A 78 IQLHGPPRVKA--------------------------------------VKSSEHINEGETAMLVCKSESVPPVTDWAWY 119 (184)
T ss_dssp EEECCSCCCEE--------------------------------------SCSEEEECTTSCEEEEEECCCSSCCCEEEEE
T ss_pred EEEecCCceee--------------------------------------cCCCcEEcCCCcEEEEEEECCCCCCCeEEEE
Confidence 77766554321 12345678999999999999999 7899999
Q ss_pred E---CCe-ecCC--CCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCceeEEEEEEEec
Q psy7039 391 V---NGD-EVSP--DGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVYVVD 448 (516)
Q Consensus 391 ~---~~~-~l~~--~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~s~~l~v~~ 448 (516)
+ ++. .+.. +.++.+...+....|.|.++. . .|.|.|+|.|.|..|....++.|.|..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~-~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME-ADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT-TSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc-ccCceEEEEEEeCCCcceEEEEEEEec
Confidence 9 443 3332 367777777777899999999 9 999999999999999988888888863
No 141
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.66 E-value=7e-16 Score=144.26 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccc
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRA 156 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~ 156 (516)
++++|.|.|+|.|. |..... ..+ +.. .+|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~-~~~-~~~----~~~~~~-~~p~~~~v~~G~~v~L~C~~~----------------- 63 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTN-YWM-NWL----RELVMT-QSPLTLSVTIGQPASISCKSS----------------- 63 (254)
T ss_dssp ------------------------------------CCCEE-EECSEEEECTTSCEEEEEEES-----------------
T ss_pred ecCCccEEEEEcCc---hhhhhh-hhh-hee----eceeEE-eCCceEEecCCCcEEEEeecc-----------------
Confidence 67899999999996 332211 111 111 144444 556789999999999999998
Q ss_pred cCccceeecCcC-----ceeeEEeeCC--eee------------ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 157 NSTKGWVKLSEP-----FLNHGWSING--QVC------------QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 157 ~~~~~~~~~~~p-----~~~i~W~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
+.+ .+.+.|+++. ..+ ....|+.+...+...+|.|.+++.+|+|.|.|.+.|
T Consensus 64 ---------~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 134 (254)
T 2c1o_A 64 ---------QSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGS 134 (254)
T ss_dssp ---------SCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred ---------CcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 666 4889998732 211 112566666566677999999999999999999876
Q ss_pred C
Q psy7039 218 N 218 (516)
Q Consensus 218 ~ 218 (516)
.
T Consensus 135 ~ 135 (254)
T 2c1o_A 135 H 135 (254)
T ss_dssp S
T ss_pred C
Confidence 4
No 142
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=155.47 Aligned_cols=213 Identities=12% Similarity=0.007 Sum_probs=146.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccc-cCcccceEEecCCeEEEEEe-----eeec
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRID-RSTLNDVKIKAGQSFSFDVK-----EFRE 141 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~-~~~~~~~~v~~g~~~~l~C~-----~~~~ 141 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+.. +|... ........+.+|+.+.|.|. +.
T Consensus 79 ~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~---~~~~l~V~~---~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-- 150 (339)
T 3o4o_C 79 QDGALWLLPALQEDSGTYVCTTRNASYCDK---MSIELRVFE---NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTR-- 150 (339)
T ss_dssp ETTEEEESSBCTTCCEEEECCEEETTEEEE---EEEEEEEEC---SCGGGHHHHCEEEEEETTSCEEEECCSCTTTCC--
T ss_pred eCCeEEECCCCcccCEEEEEEEECCcceEE---EEEEEEEEc---CCCccccccccceEEECCCCEEEEecCCccccc--
Confidence 356899999999999999999998766322 122233322 11111 01122347889999999999 66
Q ss_pred cccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+.|.+.+.|++++..+... .++.+ ......|.|.+++.+|+|.|+|.+.|..|
T Consensus 151 ------------------------g~p~~~v~W~k~g~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 204 (339)
T 3o4o_C 151 ------------------------DKTDVKIQWYKDSLLLDKDNEKFLS--VRGTTHLLVHDVALEDAGYYRCVLTFAHE 204 (339)
T ss_dssp ------------------------SSSCCCBCCEESSCBCCTTCSSEEE--CTTSSEEEESSCCGGGCEEEEEEEECCBT
T ss_pred ------------------------CCCCceEEEecCCeeCCCCCceeEE--cCCcceEEEcccCHhhCeEEEEEEEECCC
Confidence 8899999999999888654 34433 23345899999999999999999999877
Q ss_pred c----eEEEEEeece--------ee----eeccccCCceEEEEEEEEccCCCC-Cceecccccccc--------eEEE--
Q psy7039 221 T----ATASAHVTGT--------EF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDALIGK--------RIKE-- 273 (516)
Q Consensus 221 ~----~~~~~~~~~~--------~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~~--------~~~~-- 273 (516)
. ......+.+. .+ ....+..|..+.|.|.+....|.| .+.+.|...... ....
T Consensus 205 ~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~ 284 (339)
T 3o4o_C 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284 (339)
T ss_dssp TBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECC
T ss_pred CeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecc
Confidence 4 2223322221 11 123466799999999886557888 888999652110 1110
Q ss_pred -EEeccee------eEEEccCCCCCc-eEEEEEEEecCCCcceeEEEEE
Q psy7039 274 -FVTSTTA------SLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 274 -~~~~~~~------~l~i~~l~~~d~-g~y~c~a~n~~g~~~~~~~l~v 314 (516)
......+ .|.|.++..+|. |.|+|.|.|..|..+..+.+.+
T Consensus 285 ~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred eEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence 0011112 799999999997 9999999999999877665544
No 143
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.66 E-value=7.8e-14 Score=138.23 Aligned_cols=94 Identities=23% Similarity=0.258 Sum_probs=73.7
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.+....++| +|.+|.+..++++++.|+|.+|. ++.+.+|+|++...+. .+..........+++.|.+|.+++
T Consensus 86 ~~~~~~~~~~~p-~p~~l~~~~~~~~si~l~W~~~~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 161 (375)
T 3t1w_A 86 VPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGI 161 (375)
T ss_dssp CCEEEEECCCCC-CCSCCEEECCCSSEEEEECCCCC---CTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTC
T ss_pred CcEEeeEcCCCC-CCceEEEEecCCCeEEEEEECCC---CCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCC
Confidence 344555566677 48999999999999999999973 3469999999998665 222333445678899999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 162 ~Y~~~V~a~~~~g~s~~s~ 180 (375)
T 3t1w_A 162 DYDISVITLINGGESAPTT 180 (375)
T ss_dssp EEEEEEEEEETTEECCCEE
T ss_pred EEEEEEEEEeCCcccCCee
Confidence 9999999999988776543
No 144
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.66 E-value=5.7e-15 Score=135.45 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=89.2
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.|.|..|.....+.+.+...+..
T Consensus 81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~------------------------------------- 123 (226)
T 4f80_A 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSD------------------------------------- 123 (226)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCC-------------------------------------
T ss_pred CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceec-------------------------------------
Confidence 4568999999999999999999998777665555444332222
Q ss_pred cccccccEEEEcCCeEEEEEEEeee-cCCceEEEECCee-cCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDE-VSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~-l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
......+..|..+.+.|.+.|. |.|.|.|++++.. +............ ....+.+..+.. .|.|.|+|.|.|.
T Consensus 124 ---~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~-~d~G~YtC~a~N~ 199 (226)
T 4f80_A 124 ---LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG-SSGEGVSCTIRSS 199 (226)
T ss_dssp ---CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC-----CEEEEEEET
T ss_pred ---ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEech-hcCcEEEEEEEeC
Confidence 1234567889999999999885 8899999986543 3322222222222 223344556677 8999999999999
Q ss_pred CCceeEEEEEEEec
Q psy7039 435 VGSDSASCKVYVVD 448 (516)
Q Consensus 435 ~G~~s~s~~l~v~~ 448 (516)
.|....++.|.|..
T Consensus 200 ~g~~~~~~~v~v~e 213 (226)
T 4f80_A 200 LLGLEKTASISIAD 213 (226)
T ss_dssp TTTEEEEEEECCCT
T ss_pred CCCeEEEEEEEECC
Confidence 99998888888754
No 145
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.66 E-value=1.9e-15 Score=136.73 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=121.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeee------------ccCCc
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVC------------QIGGR 186 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~------------~~~~~ 186 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+ ....+
T Consensus 6 ~~~~~~~v~~G~~v~L~C~~~--------------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r 59 (212)
T 1f97_A 6 TAQSDVQVPENESIKLTCTYS--------------------------GFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59 (212)
T ss_dssp CSCSEEEEETTCCEEEECEEE--------------------------SCSSEEEEEEEEETTEEEEEEETTEECGGGTTT
T ss_pred ecCCCeEEEcCCCEEEEeEeC--------------------------CCCCcEEEEEECCCceeeEEecCCcccccccCc
Confidence 455678899999999999999 8899999999976553 11234
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc--eEEEEEeecee-------eeeccccCCceEEEEEEEEccCCCC
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT--ATASAHVTGTE-------FTDNNVHEGKAYEYRVSAVNAAGTE 257 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--~~~~~~~~~~~-------~~~~~l~~g~~~~~~~~~~~~~g~p 257 (516)
+.+. + ..|.|.+++.+|+|.|+|.+.+..|. ......+.+.. .....+..|..+.+.|.+ ..|.|
T Consensus 60 ~~~~--~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p 133 (212)
T 1f97_A 60 VTFS--S--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE--HDGSP 133 (212)
T ss_dssp EEEE--T--TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEEC--SCCBS
T ss_pred EEee--c--eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEc--ccCcC
Confidence 4332 1 68999999999999999999998662 23333222211 122356789999999983 27889
Q ss_pred Cceeccccccc-ce------------EEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEec
Q psy7039 258 KPKISLDALIG-KR------------IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVS 316 (516)
Q Consensus 258 ~p~i~W~~~~~-~~------------~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~ 316 (516)
.|.+.|.+... .- ...........|.|.++..+|.|.|+|.|.|..|.. +..+.|.|..
T Consensus 134 ~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 134 PSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred CCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 99999965322 11 112233557789999999999999999999999987 5566666654
No 146
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.65 E-value=1.4e-15 Score=137.06 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=122.0
Q ss_pred ccCCceEEEEEEEEccCCCCCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 238 VHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 238 l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
+.+|..+.+.|.+ .|.|.|.+.|.+..+. ............|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 13 ~~~G~~v~L~C~~---~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~ 89 (202)
T 1vca_A 13 AQIGDSVSLTCST---TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY 89 (202)
T ss_dssp EETTSCEEEEEEE---ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred EcCCCcEEEEEee---cCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE
Confidence 3489999999998 7889999999762211 1122234556789999999999999999999998877778888888
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEEC
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVN 392 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~ 392 (516)
..|..+.. .....+..|+.+.|.|.+.+.+++ .|.|+++
T Consensus 90 ~~p~~~~~--------------------------------------~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~ 131 (202)
T 1vca_A 90 SFPKDPEI--------------------------------------HLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKG 131 (202)
T ss_dssp BCCSCCEE--------------------------------------EESSCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred eCCCCCEe--------------------------------------CCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence 76654311 011357899999999999987543 6899999
Q ss_pred CeecCCCCceEEE----EcCCeEEEEEcCceecCCceEEEEEEEcCCCc-------eeEEEEEEEecCCC
Q psy7039 393 GDEVSPDGRIKFE----TSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-------DSASCKVYVVDKPS 451 (516)
Q Consensus 393 ~~~l~~~~~~~~~----~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-------~s~s~~l~v~~~p~ 451 (516)
+..+......... .......|.|..... +|.|.|+|.|.|..|. ...+..|.|..+|.
T Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~-d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 132 DHLMKSQEFLEDADRKSLETKSLEVTFTPVIE-DIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp TEEEEEEECCSCCSSCCCEEEEEEEEECCCGG-GTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred CeECcccccccccCcCcceEEEEEEEEEeeec-cCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 9876422100000 001124567888877 8999999999999876 34567777776543
No 147
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.65 E-value=6.3e-16 Score=135.99 Aligned_cols=165 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.+.+ .+.|++++..+..
T Consensus 4 ~P~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~i~W~~~~~~~~~-------- 48 (176)
T 1f2q_A 4 KPKVS-LNPPWNRIFKGENVTLTCNGN--------------------------NFFEVSSTKWFHNGSLSEE-------- 48 (176)
T ss_dssp CCCCE-EESSCSEEETTCCEEEECCTT--------------------------CC----CCEEEETTEECSC--------
T ss_pred CCEEE-cCCCCcceecCCcEEEEEeCC--------------------------CCCCcceEEEEECCeECCC--------
Confidence 55565 455667899999999999998 77764 7999999887752
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----eeeccccCCceEEEEEEEEccCCCCCceecccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI 267 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~ 267 (516)
....|.|.+++.+|+|.|+|.+.+..+.....+.+.... .....+.+|+.+.+.|.+. .|.|.+.+.|.+..
T Consensus 49 --~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g 124 (176)
T 1f2q_A 49 --TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGW--RNWDVYKVIYYKDG 124 (176)
T ss_dssp --CSSEEEECSCCGGGCEEEEEECTTSSCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEG--GGCCEEEEEEEETT
T ss_pred --CceEEEEeccceecCEEEEEEcCCccccccEEEEEeCcceeecCCcceeeCCCCEEEEEEec--CCCCceEEEEEECC
Confidence 356899999999999999999998776655555443211 1234567899999999872 45677899997622
Q ss_pred cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCC-CcceeEEEEEecCCC
Q psy7039 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPG 319 (516)
Q Consensus 268 ~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-~~~~~~~l~v~~~p~ 319 (516)
.. +........|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|..+|.
T Consensus 125 -~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 125 -EA--LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp -EE--CCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred -EE--EeeecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 11 11234567899999999999999999999644 345668888887764
No 148
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=99.64 E-value=2e-16 Score=173.94 Aligned_cols=82 Identities=16% Similarity=0.267 Sum_probs=65.8
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC--------------C-CCeEEeEEee---------cCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--------------T-GNWEKAVVVP---------AGE 69 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~--------------~-~~~~~~~~~~---------~~~ 69 (516)
..+|.+|++..+++++|.|+|.+|..+++++|.+|.|+|++. + ..|....... ...
T Consensus 469 ~~~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~ 548 (897)
T 2dtg_E 469 ENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNH 548 (897)
T ss_dssp SCCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSC
T ss_pred ccceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccc
Confidence 357789999999999999999998766777899999998875 1 2565432111 026
Q ss_pred cEEEeCCCcCCCeEEEEEEE-ecCCCC
Q psy7039 70 TSCTVPGLIEGETYQFQVRA-VNAAGP 95 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a-~n~~g~ 95 (516)
+++.|.+|+|++.|.|+|+| .|..|.
T Consensus 549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~ 575 (897)
T 2dtg_E 549 PGWLMRGLKPWTQYAIFVKTLVTFSDE 575 (897)
T ss_dssp CEEEECSCCSSCBCCBEEEECCCCCSS
T ss_pred cceEeCCCCCCcEEEEEEEEEEeccCC
Confidence 88999999999999999999 898887
No 149
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.64 E-value=1.4e-15 Score=137.74 Aligned_cols=170 Identities=18% Similarity=0.290 Sum_probs=121.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC----ceeeEEee----------------CC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP----FLNHGWSI----------------NG 178 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~i~W~~----------------~~ 178 (516)
.++..+.+.+|+.+.|.|.+. +.+ .+.+.|++ ++
T Consensus 5 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 58 (214)
T 3jz7_A 5 TPEQRIEKAKGETAYLPCKFT--------------------------LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD 58 (214)
T ss_dssp -CEEEEEEETTSCEEECCBCC--------------------------CCTTCCSCCEEEEEEEESSSSCCSEEEEEEETT
T ss_pred cCCceEEEecCCCEEEEEEEe--------------------------cCCCCCCcEEEEEEecCCCCCCCceEEEEEeCC
Confidence 344668899999999999998 444 34666665 44
Q ss_pred eeecc-----CCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-------eeeccccCCce
Q psy7039 179 QVCQI-----GGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKA 243 (516)
Q Consensus 179 ~~~~~-----~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-------~~~~~l~~g~~ 243 (516)
..+.. ..|..+.. .....+|.|.+++.+|+|.|+|.+.+..|.......+.+.. .....+..|..
T Consensus 59 ~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~ 138 (214)
T 3jz7_A 59 KIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGND 138 (214)
T ss_dssp EEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCC
T ss_pred eEccccCCccccceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCc
Confidence 44432 34444432 22467899999999999999999999887665555433321 12334678999
Q ss_pred EEEEEEEEccCCCCCceecccccccc-eEE--EEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 244 YEYRVSAVNAAGTEKPKISLDALIGK-RIK--EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p~i~W~~~~~~-~~~--~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
+.+.|.+. .|.|.|.+.|.+.... ... .........|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 139 v~l~C~~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 139 FKLKCEPK--EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp EEEEEECS--BCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred EEEEecCC--CCCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence 99999873 6889999999762211 110 01123456999999999999999999999999998888888763
No 150
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.64 E-value=3.6e-16 Score=141.69 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=122.3
Q ss_pred ccccCCceEEEEEEEEccCCCC----Cceecccccccc--------------eE----------EEEE-----ecceeeE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE----KPKISLDALIGK--------------RI----------KEFV-----TSTTASL 282 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~~~--------------~~----------~~~~-----~~~~~~l 282 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.... .. .... ......|
T Consensus 10 v~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 10 IEKAKGETAYLPCKF---TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEETTSCEEECCBC---CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred EEEecCCCEEEEEEE---ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 356789999999987 5544 568999652110 00 0111 1145779
Q ss_pred EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 283 ~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.|.+++.+|+|.|+|.+.|..|.....+.|.|...|..+.. .
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~--------------------------------------~ 128 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC--------------------------------------F 128 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE--------------------------------------E
T ss_pred EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee--------------------------------------e
Confidence 99999999999999999999888888888888877654321 1
Q ss_pred ccEEEEcCCeEEEEEEE-eeecCCceEEEECCe--ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 363 RDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGD--EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~--~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
....+..|+.+.|.|.+ .+.|.+.+.|++++. .+...... ......|.|.++.. .|.|.|+|.|.|..|..+
T Consensus 129 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~-~d~G~Y~C~a~N~~g~~~ 203 (214)
T 3jz7_A 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASS-EYSGTYSCTVQNRVGSDQ 203 (214)
T ss_dssp EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCG-GGCEEEEEEEECSSCEEE
T ss_pred eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCH-HHCEEEEEEEEcCCCcEE
Confidence 11235789999999999 899999999999543 33221111 11223799999999 999999999999999998
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 204 ~~~~l~V~~ 212 (214)
T 3jz7_A 204 CMLRLDVVP 212 (214)
T ss_dssp EEEEECCBC
T ss_pred EEEEEEEeC
Confidence 888888874
No 151
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.64 E-value=3.6e-15 Score=131.02 Aligned_cols=162 Identities=12% Similarity=0.029 Sum_probs=119.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee-eEEeeCCeeeccCCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN-HGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-i~W~~~~~~~~~~~~~~~~ 190 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+. +.|++++..+..
T Consensus 6 ~~p~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~~~~W~~~~~~~~~------- 51 (175)
T 1fnl_A 6 PKAVVF-LEPQWYSVLEKDSVTLKCQGA--------------------------YSPEDNSTQWFHNESLISS------- 51 (175)
T ss_dssp CCCEEE-EESCCSEEETTCCEEEEEECC--------------------------CBTTBCCCEEEETTEEEES-------
T ss_pred CCCEEE-EcCCceeeeCCCcEEEEeeCC--------------------------CCCCCcceEEEECCEEccC-------
Confidence 345555 445557899999999999999 777665 789999887752
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee----eeeccccCCceEEEEEEEEccCCCCC-ceecccc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE----FTDNNVHEGKAYEYRVSAVNAAGTEK-PKISLDA 265 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~----~~~~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~ 265 (516)
....|.|.+++.+|+|.|+|.+.|..+.....+.+.... .....+.+|..+.+.|.+ .|.++ +.+.|.+
T Consensus 52 ---~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~W~k 125 (175)
T 1fnl_A 52 ---QASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHS---WKNTALHKVTYLQ 125 (175)
T ss_dssp ---SCSEEEESSCCGGGCEEEEEECSSSCCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEE---CTTCCCEEEEEEE
T ss_pred ---CceEEEEeCCCcccCEEEEEEeeCCcccccEEEEEeCCCceeeCCCceecCCCCEEEEEEc---CCCCCceEEEEEE
Confidence 345899999999999999999998766555444443211 122346689999999988 55544 5999976
Q ss_pred cccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEEec
Q psy7039 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVS 316 (516)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v~~ 316 (516)
... .. ........|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 126 ~g~-~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 126 NGK-DR--KYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp TTE-EE--EEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCe-Ec--cCCCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 322 11 12234678999999999999999999997554 45567777754
No 152
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.64 E-value=5.2e-15 Score=132.76 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=55.4
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCc-----
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGS----- 437 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~----- 437 (516)
..+..|+.+.|.|.+.+. .+.+.|++++..+.... .+... .......|.|.++.. .|.|.|+|.|.|..+.
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~~s~ 187 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP-SRRWWYRCYAYDSNSPYEWSL 187 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCT-TSCEEEEEEEECTTSTTEECC
T ss_pred cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCc-ccCeEEEEEEEeCCCCccccC
Confidence 467899999999999988 78999999998763322 11111 122357899999999 9999999999999763
Q ss_pred eeEEEEEEEe
Q psy7039 438 DSASCKVYVV 447 (516)
Q Consensus 438 ~s~s~~l~v~ 447 (516)
.+..+.|.|.
T Consensus 188 ~S~~~~l~V~ 197 (198)
T 1ugn_A 188 PSDLLELLVL 197 (198)
T ss_dssp CCCCEEEEEE
T ss_pred cCceEEEEec
Confidence 2445566554
No 153
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.64 E-value=3.1e-14 Score=135.84 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCCCCCCcceEEEeee-----CCeeEEEecCCC-CCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 11 FDEPGKPTDLEATDWD-----KDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~-----~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
+++|+.|.++...... +++|.|+|.++. .+++++|.+|.|++...+..+... ..+. ..+.+|.+++.|.
T Consensus 1 E~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~~~---~~~~--~~~~~l~p~t~Y~ 75 (290)
T 3l5i_A 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY---TVNA--TKLTVNLTNDRYL 75 (290)
T ss_dssp CCCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCEEE---EESS--SEEEEEECSSCEE
T ss_pred CCCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcCceeE---ecCC--cEEEEEcCCceEE
Confidence 4678888888665322 478999999842 355678999999999876643211 1123 3567789999999
Q ss_pred EEEEEecCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEAS 99 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s 99 (516)
|+|.|.|..|.+.++
T Consensus 76 ~~V~A~n~~G~s~~s 90 (290)
T 3l5i_A 76 ATLTVRNLVGKSDAA 90 (290)
T ss_dssp EEEEEEESSCBCCCE
T ss_pred EEEEEEcCCCCCCCc
Confidence 999999999987554
No 154
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.64 E-value=5.9e-15 Score=134.22 Aligned_cols=131 Identities=22% Similarity=0.351 Sum_probs=114.6
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.++.+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+........|.|.++.. .|.|.|.|.|.|..|....
T Consensus 26 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~ 104 (215)
T 3mtr_A 26 VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQESL 104 (215)
T ss_dssp SEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSG-GGCEEEEEEEECSSCEEEE
T ss_pred ceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCCh-hhCeEEEEEEEECCCceEE
Confidence 4477889999999999999999999999999988655 466766666778999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 441 SCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 441 s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.+.|.|..+|.+| ..+.+ .....++.|+|++|..+++.++.+|.|+++..+...
T Consensus 105 ~~~l~v~~~P~~p-~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~ 158 (215)
T 3mtr_A 105 EFILVQADTPSSP-SIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEV 158 (215)
T ss_dssp EEEEEECCCCCCC-EEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCC
T ss_pred EEEEEECCCCCCC-cceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCc
Confidence 9999999999888 55555 356788999999888788999999999999987765
No 155
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.63 E-value=6.6e-16 Score=140.09 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=90.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
...+|.|.+++.+|+|.|.|.+.+..+..... ..+.+...+....
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 122 (218)
T 4frw_A 77 LDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSL---------------------------------- 122 (218)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEE----------------------------------
T ss_pred CeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeecccee----------------------------------
Confidence 34679999999999999999999876654433 3333333222210
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.......+..|..+.+.|.+.|.|.|.|.|++++..+.....+..... ...+.|.|..+.. +|.|.|+|.|.|..
T Consensus 123 ---~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~ 198 (218)
T 4frw_A 123 ---NPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRS-MNGQPLTCVVSHPG 198 (218)
T ss_dssp ---EECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGG-GTTCEEEEEEECTT
T ss_pred ---eeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCH-HhCeEEEEEEEeCC
Confidence 112234456788999999999999999999999876543222111000 0124799999999 99999999999999
Q ss_pred CceeEEEEEEE
Q psy7039 436 GSDSASCKVYV 446 (516)
Q Consensus 436 G~~s~s~~l~v 446 (516)
|..+..+.+.|
T Consensus 199 g~~~~~~t~~v 209 (218)
T 4frw_A 199 LLQDQRITHIL 209 (218)
T ss_dssp CSSCEEEEEEC
T ss_pred CCeEEEEEEEE
Confidence 98766655544
No 156
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.63 E-value=1.7e-15 Score=136.30 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=119.9
Q ss_pred cccCCceEEEEEEEEccCCCCC-----ceeccccccc------ceEEEEE---ecceeeEEEccCCCCCceEEEEEEEec
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEK-----PKISLDALIG------KRIKEFV---TSTTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~-----p~i~W~~~~~------~~~~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
.+..|+.+.|.|.+ .+.+. +.+.|.+..+ .+..+.. ......|.|.+++.+|+|.|+|.+.|.
T Consensus 13 ~v~~G~~v~L~C~~---~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~ 89 (202)
T 3bp6_B 13 TVDVGSSVSLECDF---DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG 89 (202)
T ss_dssp EEETTSCEEEEEEE---CTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEeCCCcEEEEEEe---cCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence 45689999999998 66665 8899976111 1222211 114578999999999999999999999
Q ss_pred CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee
Q psy7039 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR 382 (516)
Q Consensus 303 ~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~ 382 (516)
.+.....+.|.|...+..|.. ....+..|+.+.|.|.+.|.
T Consensus 90 ~~~~~~~~~l~V~~~~~~p~~---------------------------------------~~~~~~~g~~v~l~C~~~g~ 130 (202)
T 3bp6_B 90 AAWDYKYLTVKVKASYMRIDT---------------------------------------RILEVPGTGEVQLTCQARGY 130 (202)
T ss_dssp TEEEEEEEEEEEEBCCCCEEE---------------------------------------EEEECTTTCCEEEEEEEEEB
T ss_pred CCcceEEEEEEecCCCCcccE---------------------------------------EEEecCCCCeEEEEEEcccc
Confidence 887777888888765533210 11134578999999999999
Q ss_pred cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 383 PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 383 p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
|.|.+.|++++..+. ........+....+.|..+.. .|.|.|+|.|.|..|....++.|.|..+
T Consensus 131 P~p~v~W~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~l~v~~~ 194 (202)
T 3bp6_B 131 PLAEVSWQNVSVPAN--TSHIRTPEGLYQVTSVLRLKP-QPSRNFSCMFWNAHMKELTSAIIDPLSR 194 (202)
T ss_dssp SCCEEEETTCCSCCE--EEEEECTTSCEEEEEEEEECC-CTTCCEEEEEEETTTTEEEEEEECC---
T ss_pred CCceEEEEeCCCCcc--CceeeCCCCCEEEEEEEEEEc-CCCCEEEEEEEcCCcccccEEEEEecCc
Confidence 999999998876442 111111222334567778888 9999999999999999988888877543
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.63 E-value=1.4e-15 Score=149.26 Aligned_cols=170 Identities=20% Similarity=0.215 Sum_probs=132.3
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccccceEEE---EEecceeeEEEccCCCCCce-EEEEEEEecCCCcceeE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKE---FVTSTTASLNIKNSVRKDSG-IYKIEAKNDYGIDMADI 310 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~l~i~~l~~~d~g-~y~c~a~n~~g~~~~~~ 310 (516)
...+.+|+.+.+.|.+ .|.|.|.+.|.......... ........|.|.++...|+| .|+|.|.|..|.....+
T Consensus 167 ~~~v~~G~~v~L~C~~---~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~ 243 (347)
T 2ifg_A 167 NASVDVGDDVLLRCQV---EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243 (347)
T ss_dssp SSCCBTTCCEEEEEEE---ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred ceEEeCCCcEEEEEEE---ecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEE
Confidence 4467889999999998 78899999997633221111 12456789999999999999 99999999998887777
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.+.|..+|.+ .......|+.+.|.|.+.|.|.|.+.|+
T Consensus 244 ~l~V~~~P~i------------------------------------------~~~~~~~g~~v~l~C~~~g~P~p~i~W~ 281 (347)
T 2ifg_A 244 QVNVSFPASV------------------------------------------QLHTAVEMHHWCIPFSVDGQPAPSLRWL 281 (347)
T ss_dssp CCCCBEEEEE------------------------------------------EECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred EEEEcCCCee------------------------------------------eeccCccCceEEEEEEeeecCCCcEEEE
Confidence 7777554431 0012356889999999999999999999
Q ss_pred ECCeecCCCCceEEEEcC-------CeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 391 VNGDEVSPDGRIKFETSE-------NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+++..+............ ....|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCc-ccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 999988765554433222 246799999999 99999999999999999998888887654
No 158
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.63 E-value=3e-15 Score=131.69 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=84.0
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCCc--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGID--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...+..|.
T Consensus 61 gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p~----------------------------------- 105 (176)
T 1hng_A 61 GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPM----------------------------------- 105 (176)
T ss_dssp SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCCE-----------------------------------
T ss_pred CcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCCE-----------------------------------
Confidence 358999999999999999999988876 5566777766433221
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
....+..+.|.|.+.|.|.|.+.|++++..+..+.+ +.|..+.. .|.|.|+|.|.|..|.
T Consensus 106 --------i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~-~d~G~Y~C~a~N~~g~ 165 (176)
T 1hng_A 106 --------IYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWT-NLRAPFKCKAVNRVSQ 165 (176)
T ss_dssp --------EEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESS-----------SEEEEECS-CCSSCEEEEEEETTEE
T ss_pred --------EEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc-----------EEEEEEEc-cCCeEEEEEEEecCCC
Confidence 112234588999999999999999999987644333 23335667 9999999999999998
Q ss_pred eeEEEEEEE
Q psy7039 438 DSASCKVYV 446 (516)
Q Consensus 438 ~s~s~~l~v 446 (516)
......|.+
T Consensus 166 ~~~~~~l~~ 174 (176)
T 1hng_A 166 ESEMEVVNC 174 (176)
T ss_dssp EEEEECCCC
T ss_pred ceecccccC
Confidence 877665543
No 159
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.63 E-value=3.4e-15 Score=136.23 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=59.4
Q ss_pred EEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeE
Q psy7039 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSA 440 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~ 440 (516)
.+.+|+.++|.|.+.+.+.+.+.|+++|..+... .........|.|.++.. .|+|.|+|.|.|..+ ..+.
T Consensus 116 ~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~~~~~s~~S~ 190 (218)
T 1uct_A 116 VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDL-NVSGIYRCYGWYNRSPYLWSFPSN 190 (218)
T ss_dssp EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCG-GGCEEEEEEEECTTSTTEECCCCC
T ss_pred ccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----ccCCCccCEEEEccCCc-ccCEEEEEEEEcCCCCCcCCCCCC
Confidence 5678999999997777777899999999876432 11234456899999999 999999999998642 2345
Q ss_pred EEEEEEecC
Q psy7039 441 SCKVYVVDK 449 (516)
Q Consensus 441 s~~l~v~~~ 449 (516)
.+.|.|.+.
T Consensus 191 ~~~l~V~g~ 199 (218)
T 1uct_A 191 ALELVVTDS 199 (218)
T ss_dssp CEEEEEC--
T ss_pred cEEEEEecC
Confidence 577777654
No 160
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.63 E-value=2.2e-15 Score=141.82 Aligned_cols=230 Identities=13% Similarity=0.095 Sum_probs=142.9
Q ss_pred eCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC---cCCC--eEEEEEEEecCCCCCCCCC
Q psy7039 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL---IEGE--TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 26 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~~~--~y~~~~~a~n~~g~~~~s~ 100 (516)
....+.|.+... +..+.-...+.|...+..... ........+.+..+ +..| .|.|+|.|.|..|...
T Consensus 17 ~G~~v~l~C~~~---g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~--- 88 (265)
T 2oz4_A 17 VDTQGTVVCSLD---GLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQE--- 88 (265)
T ss_dssp TTEEEEEEEEEE---SCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEE---
T ss_pred cCCCEEEEEEcc---CCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcE---
Confidence 355677777652 111111224455544431100 11112335555544 4445 4569999999876532
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
....+.+... .+|.+. +....+.+|+.+.|.|.+. |.+.++| ++..
T Consensus 89 ~~~~l~V~~~-p~p~~~---~~~~~v~~G~~v~l~C~~~----------------------------p~~~i~W--~g~~ 134 (265)
T 2oz4_A 89 TLQTVTIYSF-PAPNVI---LTKPEVSEGTEVTVKCEAH----------------------------PRAKVTL--NGVP 134 (265)
T ss_dssp EEEEEEEECC-CCCEEE---ESCSEEETTCEEEEEEECC----------------------------TTSEEEE--SSCS
T ss_pred EEEEEEEeCC-CCceee---cCCceecCCCcEEEEEEcc----------------------------CCCEEEE--CCEE
Confidence 2222333222 124443 3456688999999999874 6789999 6666
Q ss_pred eccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC-CceE---EEEEeecee---e------eeccccCCceEEEE
Q psy7039 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL-GTAT---ASAHVTGTE---F------TDNNVHEGKAYEYR 247 (516)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~---~~~~~~~~~---~------~~~~l~~g~~~~~~ 247 (516)
+.. .+....|.|..+..+|.|.|+|.+.|.. |... ....+.+.. + ....+.+|+.+.|.
T Consensus 135 ~~~--------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~ 206 (265)
T 2oz4_A 135 AQP--------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206 (265)
T ss_dssp SSC--------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCC
T ss_pred ccC--------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEE
Confidence 532 2345678899999999999999998544 5544 222222211 1 12246779999999
Q ss_pred EEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 248 VSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 248 ~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
|.+ .|.|.|.+.|.+... .. ...+.+. .+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 207 C~~---~g~P~p~i~W~~~~~---~~---~~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 207 CQA---WGNPLPELKCLKDGT---FP---LPIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CCC---EEESCCEEEEEETTT---EE---CCTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eEC---ccCCCCeEEEEECCc---cc---CCCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 987 889999999976443 11 1122222 4888999999999999999988888888864
No 161
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.62 E-value=7.9e-16 Score=136.36 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=117.3
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEE-----------------EEE-----ecceeeEEEccCCCCCceE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK-----------------EFV-----TSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~-----------------~~~-----~~~~~~l~i~~l~~~d~g~ 294 (516)
.+.+|+.+.|.|.+ .+.+.+.+.|.+....... ... ......|.|.+++.+|+|.
T Consensus 6 ~~~~G~~v~L~C~~---~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 6 LGKKGDTVELTCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEETTSCEEECCBC---SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEeCCCCEEEEEEE---cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 45689999999987 5888899999764321110 111 1124569999999999999
Q ss_pred EEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 295 y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|+|.+.|..+ .+.+.|...+.+ ....+..|+.+.
T Consensus 83 Y~C~~~~~~~----~~~l~V~~~~~~------------------------------------------~~~~v~~g~~~~ 116 (184)
T 2ny1_B 83 YICEVEDQKE----EVQLLVFGLTAN------------------------------------------SDTHLLQGQSLT 116 (184)
T ss_dssp EEEEETTEEE----EEEEEEEEEEES------------------------------------------SCSEEETTCCEE
T ss_pred EEEEEEcCCC----cEEEEEEEecCC------------------------------------------CCceeecCCCEE
Confidence 9999988754 344555432111 123678999999
Q ss_pred EEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCC
Q psy7039 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 375 l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P 453 (516)
|.|.+.+.|.+.+.|++++..+ .. ....|.|.++.. .|+|.|+|.|.|..|..+..+.|.|...|.+|
T Consensus 117 l~C~~~~~p~~~v~W~~~~~~~--------~~--~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~ 184 (184)
T 2ny1_B 117 LTLESPPGSSPSVQCRSPRGKN--------IQ--GGKTLSVSQLEL-QDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS 184 (184)
T ss_dssp EEEECCTTCCCEEEEECTTSCE--------EE--ESSEEEESSCCG-GGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred EEEEcCCCCCCEEEEEeCCCcc--------cc--CceEEEEecCCc-CCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence 9999999999999999887543 11 224699999999 99999999999999999999999999887653
No 162
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=133.59 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=116.0
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccc--eEEE--EEecceeeEEEccCCCCCceEEEEEEEecCC--CcceeE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK--RIKE--FVTSTTASLNIKNSVRKDSGIYKIEAKNDYG--IDMADI 310 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~--~~~~--~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g--~~~~~~ 310 (516)
.+.+|+.+.|.|.+ .| +.+.+.|.+.... .... ........|.|.+++.+|+|.|+|.|.|..| ..+..+
T Consensus 15 ~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 3p2t_A 15 VISWGNSVTIWCQG---TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEEC---CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred cCCCCCcEEEEeeC---CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence 56789999999987 56 6678888652211 1111 1124668999999999999999999999987 335567
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.|.|...+..|.. . ......+..|+.+.|.|.+.+. .+.+.|+
T Consensus 91 ~l~V~~~~~~p~~--~----------------------------------~~~~~~v~~G~~v~L~C~~~~~-~~~~~w~ 133 (196)
T 3p2t_A 91 ELVMTGAYSKPTL--S----------------------------------ALPSPLVTSGKSVTLLCQSRSP-MDTFLLC 133 (196)
T ss_dssp EEEEECSSCCCEE--E----------------------------------EESCSEECTTCCEEEEEEEEEE-EEEEEEE
T ss_pred EEEecCCCCCCEE--E----------------------------------eCCcceecCCCeEEEEEecCCC-CCEEEEE
Confidence 7777654433210 0 0111256899999999999885 4589999
Q ss_pred ECCeecCCCCc-eEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-----eeEEEEEEE
Q psy7039 391 VNGDEVSPDGR-IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-----DSASCKVYV 446 (516)
Q Consensus 391 ~~~~~l~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v 446 (516)
+++..+..... ...........|.|.++.. .|+|.|+|.|.|..+. .+....|.|
T Consensus 134 k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 134 KERAAHPLLCLRSEHGAQQHQAEFPMSPVTS-VHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp ETTCCCGGGSEEEEEEEEEEEEEEEECSCCG-GGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred eCCCcccceeecccccccCcceEEEeCCCcc-cCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 99976643321 1122223446799999999 9999999999999862 344455554
No 163
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.61 E-value=8.5e-15 Score=131.12 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=109.6
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.. .+.+|+.+.|.|.+. + +.+.+.|++++..+.... ......
T Consensus 5 ~P~i~-~~p~~-~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~-~~~~~~ 54 (196)
T 3p2t_A 5 KPTLW-AEPGS-VISWGNSVTIWCQGT--------------------------L-EAREYRLDKEESPAPWDR-QNPLEP 54 (196)
T ss_dssp CCEEE-EESCS-EEETTCCEEEEEECC--------------------------T-TCCEEEEEETTSCSCSEE-ECCCSS
T ss_pred CCEEE-ccCCC-cCCCCCcEEEEeeCC--------------------------C-CCCEEEEEECCCCCcccc-cccccC
Confidence 55555 33344 788999999999998 6 678999999988765321 111112
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCc----eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCcee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGT----ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.....|.|.+++.+|+|.|+|.+.|..|. ....+.+.. ..+ ....+.+|+.+.|.|.+ .+ +++.+
T Consensus 55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~---~~-~~~~~ 130 (196)
T 3p2t_A 55 KNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS---RS-PMDTF 130 (196)
T ss_dssp SSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEE---EE-EEEEE
T ss_pred CceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEec---CC-CCCEE
Confidence 45679999999999999999999998772 122222211 111 12246789999999988 44 34678
Q ss_pred ccccccc----c--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 262 SLDALIG----K--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 262 ~W~~~~~----~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
.|.+... . ............|.|.++..+|+|.|+|.|.|..+
T Consensus 131 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred EEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 8865211 1 11222234567899999999999999999999876
No 164
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.61 E-value=3.9e-14 Score=129.25 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=93.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.+.| .|.....+.|.|..++..+..
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~---------------------------------- 122 (222)
T 3sbw_C 78 GNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQ---------------------------------- 122 (222)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEE----------------------------------
T ss_pred CEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCc----------------------------------
Confidence 346899999999999999999999 566666777888755443211
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEEC-CeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN-GDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNT 434 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~-~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~ 434 (516)
.....+..|+.+.|.|.+.|.|.|.+.|+++ +..+........... +......+..+.. .|.|.|+|.|.|.
T Consensus 123 ----~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~d~g~Y~C~a~n~ 197 (222)
T 3sbw_C 123 ----RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT-TTNEIFYCTFRRL 197 (222)
T ss_dssp ----EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEEC-CTTCEEEEEEEET
T ss_pred ----eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEec-cCCcEEEEEEEeC
Confidence 0112456889999999999999999999998 555433222211111 1111222224567 8999999999999
Q ss_pred CCceeEEEEEEEecCC
Q psy7039 435 VGSDSASCKVYVVDKP 450 (516)
Q Consensus 435 ~G~~s~s~~l~v~~~p 450 (516)
.|....++.|.|...|
T Consensus 198 ~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 198 DPEENHTAELVIPELP 213 (222)
T ss_dssp TTTEEEEEEEECCCC-
T ss_pred ccceeeEEEEEecCCc
Confidence 9999999999887554
No 165
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.61 E-value=6.9e-15 Score=132.79 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=123.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc----cceEEEE-----------------EecceeeEEEccCCCCCceE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI----GKRIKEF-----------------VTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~----~~~~~~~-----------------~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ...+... ....++.|.|.+++..|+|.
T Consensus 9 ~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~ 85 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHN---LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV 85 (208)
T ss_dssp SEEETTCCEEEEEEC---CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred ceeecCCcEEEEEeC---CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence 456789999999985 67788899996521 1111000 01133579999999999999
Q ss_pred EEEEEEecC-CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 295 YKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 295 y~c~a~n~~-g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|+|.+.|.. +.....+.|.|...+..|.. . .... . +..|+.+
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i--~---------------------------------~~~~-~-~~~g~~v 128 (208)
T 3r4d_A 86 YTLDMTDENYRRTQATVRFHVHQPVTQPFL--Q---------------------------------VTNT-T-VKELDSV 128 (208)
T ss_dssp EEEEEECSSCEEEEEEEEEEEECCCCCCEE--E---------------------------------ESCS-S-CCTTCCE
T ss_pred EEEEEEcccCceeEEEEEEEeccCCCCCEE--e---------------------------------cCCc-e-EeeCCCE
Confidence 999999985 45566677777655443311 0 0011 1 6789999
Q ss_pred EEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecCCC
Q psy7039 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451 (516)
Q Consensus 374 ~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~ 451 (516)
.|.|.+.+.| +.+.|++++..+..+.++.+.... ..|.|.++.. .|.|.|+|.|.|..|.. +..+.|.|..++.
T Consensus 129 ~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 129 TLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKR-EDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp EEEEECSCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCG-GGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred EEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCH-HhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 9999999866 799999999998777777655332 5799999999 99999999999999984 5557777665543
No 166
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.61 E-value=5.9e-15 Score=134.11 Aligned_cols=167 Identities=17% Similarity=0.099 Sum_probs=113.1
Q ss_pred cccceEEecC--CeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC---CeeeccCCceEEeecCC
Q psy7039 120 TLNDVKIKAG--QSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN---GQVCQIGGRADVQTTKS 194 (516)
Q Consensus 120 ~~~~~~v~~g--~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~---~~~~~~~~~~~~~~~~~ 194 (516)
.+..+.+.+| +.+.|.|.+. + |.+.++|++. +..+....++... .
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~--------------------------~-p~~~v~w~~~~~~g~~~~~~~~~~~~---~ 62 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGS--------------------------I-SNLNVSLCARYPEKRFVPDGNRISWD---S 62 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBS--------------------------S-TTCCEEEEEETTTEEECCCSSSCEEE---T
T ss_pred CceEEEEecCCCccEEEeeccC--------------------------C-CCcEEEEEhhcCCCccccCCCccccc---C
Confidence 3467889999 9999999998 6 6689999874 5555444444332 2
Q ss_pred eeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec---eee----ee-ccccCCceEEEEEEEEccCCCC--Ccee
Q psy7039 195 ETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG---TEF----TD-NNVHEGKAYEYRVSAVNAAGTE--KPKI 261 (516)
Q Consensus 195 ~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~---~~~----~~-~~l~~g~~~~~~~~~~~~~g~p--~p~i 261 (516)
...|.|.+++.+|+|.|+|.+.|..+.... .+.+.. ..+ .. ..+.+|+.+.|.|.+ .|.| .+.+
T Consensus 63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~---~g~p~~~~~i 139 (213)
T 2x1w_L 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTA---RTELNVGIDF 139 (213)
T ss_dssp TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEE---EECTTBCCEE
T ss_pred CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEE---ECCCCCceEE
Confidence 347999999999999999999885443322 222211 111 11 156789999999998 5533 4578
Q ss_pred cccccccc--eEEE---EE--------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 262 SLDALIGK--RIKE---FV--------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 262 ~W~~~~~~--~~~~---~~--------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.|...... .... .. ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|.
T Consensus 140 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp EEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred EEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 99653221 1111 10 12245799999999999999999999999998899999987664
No 167
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.60 E-value=3.4e-15 Score=134.76 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=114.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
..+.+|+.+.|.|.+ .|.+.+. +.|.+... . .......|.|.+++.+|+|.|+|.+.|. ..+..+.|.|
T Consensus 17 ~~v~~G~~v~L~C~~---~~~p~~~~v~W~k~g~-~----l~~~~~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V 86 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQG---AYSPEDQSTQWFHNES-L----ISSQASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEV 86 (204)
T ss_dssp SEEETTCCEEEEEEC---CSSSSCCCEEEEETTE-E----ESCCSSEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEE
T ss_pred eEEECCCCEEEEEcC---CCCCCCcEEEEEECCE-E----cccCccEEEEecccccCCEEEEEEeCCC--cccccEEEEE
Confidence 457889999999998 7777665 99976321 1 1233489999999999999999999874 3444566777
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCCceEEEECC
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNG 393 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~ 393 (516)
...|... ......+.+|+.+.|.|.+.+. |.+.+.|++++
T Consensus 87 ~~~p~~~---------------------------------------~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g 127 (204)
T 3sgj_C 87 HIGWLLL---------------------------------------QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG 127 (204)
T ss_dssp ECSSEEE---------------------------------------ECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETT
T ss_pred ecCceEe---------------------------------------cCCceeEeCCCcEEEEEEecCCCCCceEEEEECC
Confidence 6543210 1122467899999999999766 55789999999
Q ss_pred eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcC-CCceeEEEEEEEecCCCCC
Q psy7039 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT-VGSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~-~G~~s~s~~l~v~~~p~~P 453 (516)
..+.. ......|.|.++.. .|+|.|+|.|.|. .+..+..+.|.|..+|..|
T Consensus 128 ~~~~~--------~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P 179 (204)
T 3sgj_C 128 KGRKY--------FHHNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179 (204)
T ss_dssp EEEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC-----
T ss_pred cEeec--------ccCCceEEECcCCc-ccCEEEEEEEEeCCCceecCcEEEEEeCcCCCC
Confidence 76421 11224699999999 9999999999994 4556778899998877666
No 168
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.60 E-value=2.8e-15 Score=136.30 Aligned_cols=176 Identities=15% Similarity=0.063 Sum_probs=115.4
Q ss_pred eeccccCC--ceEEEEEEEEccCCCCCceeccccc--ccceE----EEEEecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 234 TDNNVHEG--KAYEYRVSAVNAAGTEKPKISLDAL--IGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 234 ~~~~l~~g--~~~~~~~~~~~~~g~p~p~i~W~~~--~~~~~----~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
....+.+| +.+.|.|.+ .+ |.+.++|.+. .+... ... ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus 15 ~~v~v~eG~~~~v~L~C~~---~~-p~~~v~w~~~~~~g~~~~~~~~~~-~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~ 89 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLG---SI-SNLNVSLCARYPEKRFVPDGNRIS-WDSKKGFTIPSYMISYAGMVFCEAKINDES 89 (213)
T ss_dssp EEEEECCSTTCEEEECCCB---SS-TTCCEEEEEETTTEEECCCSSSCE-EETTTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred eEEEEecCCCccEEEeecc---CC-CCcEEEEEhhcCCCccccCCCccc-ccCCccEEEccCChhcCceEEEEEEECCee
Confidence 34556789 999999987 55 6688888542 11110 111 123457999999999999999999985443
Q ss_pred cce-eEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 306 DMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 306 ~~~-~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
... .+.|.|.. +.+|. +.+ .....+.+..|+.+.|.|.+.|.|.
T Consensus 90 ~~s~~~~l~v~~-~~~p~--~~~--------------------------------~~~~~~~v~~G~~v~L~C~~~g~p~ 134 (213)
T 2x1w_L 90 YQSIMYIVVVVG-YRIYD--VVL--------------------------------SPSHGIELSVGEKLVLNCTARTELN 134 (213)
T ss_dssp EECCCEEEEECB-CCEEE--EEE--------------------------------ESCSCEEEETTCCEEEEEEEEECTT
T ss_pred EEEEEEEEEEeC-Ccccc--eEE--------------------------------cCCCCeEEcCCCCEEEEEEEECCCC
Confidence 322 25555533 11110 000 1123357899999999999998654
Q ss_pred --CceEEEECCeecCCCCc-eEEEE-------cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCC
Q psy7039 385 --PTPIWTVNGDEVSPDGR-IKFET-------SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450 (516)
Q Consensus 385 --~~i~W~~~~~~l~~~~~-~~~~~-------~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p 450 (516)
+.+.|++++..+..... ..... ......|.|.++.. .|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 135 ~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 135 VGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp BCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCG-GGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred CceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCc-ccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 47999998876432211 10100 11235799999999 99999999999999999999999998765
No 169
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.60 E-value=1.5e-14 Score=126.21 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=116.7
Q ss_pred CccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeec
Q psy7039 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 114 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
|.+. ..+..+.+.+|+.+.|.|.+. +.| .+.+.|++++..+...
T Consensus 5 p~i~-~~p~~~~v~~G~~v~l~C~~~--------------------------~~p~~~~~~W~~~g~~~~~~-------- 49 (170)
T 3ry4_A 5 AVLK-LEPPWINVLQEDSVTLTCQGA--------------------------RSPESDSIQWFHNGNLIPTH-------- 49 (170)
T ss_dssp CEEE-EESCCSEEETTCEEEEEEESC--------------------------CCSSSSCEEEEETTEECTTC--------
T ss_pred CEEE-eCCCCeEEECCCcEEEEEEec--------------------------CCCCcceEEEEECCeEcccC--------
Confidence 4444 445557789999999999999 766 6799999999887643
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece----eeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT----EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~----~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...+.|.+++.+|+|.|+|.+.+........+.+... ......+.+|+.+.+.|.+. .|.|.+.+.|.+..
T Consensus 50 --~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g- 124 (170)
T 3ry4_A 50 --TQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSW--KDKPLVKVTFFQNG- 124 (170)
T ss_dssp --CSSEEEEECCGGGCEEEEEEETTSBCCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEG--GGCCEEEEEEEETT-
T ss_pred --ccceEEEecccccCeEEEEEEeCCCceEeEEEEEECCceEecCCCceeecCCeEEEEEECC--CCCCCceEEEEECC-
Confidence 2346778999999999999999866655544443321 11234567899999999882 45677899997622
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC-cceeEEEEE
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVV 314 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~-~~~~~~l~v 314 (516)
.. +........|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 125 ~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 125 KS--QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EE--EEEESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eE--ccccCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 22 223445678999999999999999999999886 444555554
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.60 E-value=3.4e-15 Score=146.51 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=132.1
Q ss_pred CCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe
Q psy7039 111 NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 111 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
..+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+..... ..
T Consensus 156 c~~P~i~-~~~~~~~v~~G~~v~L~C~~~--------------------------g~p~p~i~W~~~~~~~~~~~~--~~ 206 (347)
T 2ifg_A 156 CGVPTLK-VQVPNASVDVGDDVLLRCQVE--------------------------GRGLEQAGWILTELEQSATVM--KS 206 (347)
T ss_dssp CCCCEEE-EECCSSCCBTTCCEEEEEEEE--------------------------CSSCCCCCEEESCCCSSEEEC--CC
T ss_pred CCCCcee-ccCCceEEeCCCcEEEEEEEe--------------------------cCCCCEEEEEcCCceeecccc--cc
Confidence 3467776 556778899999999999999 999999999998865432111 11
Q ss_pred ecCCeeEEEeccCCCCCCe-eEEEEEEcCCCceEEEEEeeceee---eeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 191 TTKSETVLDIPFCSRSDTG-HYSLTLENNLGTATASAHVTGTEF---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g-~Y~c~~~~~~g~~~~~~~~~~~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
......+|.|.+++..|+| .|+|.+.|..|.......+.+... .......|+.+.+.|.+ .|.|.|.+.|.+.
T Consensus 207 ~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~---~g~P~p~i~W~~~ 283 (347)
T 2ifg_A 207 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV---DGQPAPSLRWLFN 283 (347)
T ss_dssp CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEE---EEESCCEEEEEET
T ss_pred eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEe---eecCCCcEEEEeC
Confidence 2345679999999999999 999999999887766554333221 23345678999999998 7889999999652
Q ss_pred -----ccceEEEEEe-------cceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCC
Q psy7039 267 -----IGKRIKEFVT-------STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318 (516)
Q Consensus 267 -----~~~~~~~~~~-------~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p 318 (516)
.......... ...+.|.|.+++.+|+|.|+|.|.|..|....++.+.|..+|
T Consensus 284 g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp TEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred CEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 1112221111 236679999999999999999999999998888888876654
No 171
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.59 E-value=3.9e-14 Score=125.97 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=81.9
Q ss_pred eeEEEccCCCCCceEEEEEEEecCCC--cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 280 ASLNIKNSVRKDSGIYKIEAKNDYGI--DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 280 ~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
..|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|......|. +.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~--i~------------------------------- 103 (188)
T 1oll_A 57 VKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPT--LS------------------------------- 103 (188)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCE--EE-------------------------------
T ss_pred eEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCe--EE-------------------------------
Confidence 45666677777777777777665432 23455666654332221 00
Q ss_pred cccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCC-
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG- 436 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G- 436 (516)
......+.+|+.+.|.|.+.+. .+.+.|++++..+.. ..........|.|.++.. .|+|.|+|.|.|...
T Consensus 104 ---~~p~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~-~d~G~Y~C~a~n~~~~ 174 (188)
T 1oll_A 104 ---VHPGPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHA 174 (188)
T ss_dssp ---EESCSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEECEEETTE
T ss_pred ---ECCCCccccCCEEEEEEEcCCC-CCEEEEEECCccccc----cccCCCceeEEEECCCCc-CCCcEEEEEEEcCCCc
Confidence 0112357899999999998764 568999999876532 122344567899999999 999999999998752
Q ss_pred --ceeEEEEEEEe
Q psy7039 437 --SDSASCKVYVV 447 (516)
Q Consensus 437 --~~s~s~~l~v~ 447 (516)
..+..+.|.|.
T Consensus 175 ~s~~S~~~~l~V~ 187 (188)
T 1oll_A 175 WSFPSEPVKLLVT 187 (188)
T ss_dssp ECCCCCCEEEEEE
T ss_pred CCCCCCcEEEEec
Confidence 23444556554
No 172
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=99.59 E-value=1.7e-13 Score=122.35 Aligned_cols=181 Identities=29% Similarity=0.478 Sum_probs=125.5
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.++|++|.+|++..++.+++.|+|.+|..+++.++.+|.|+++..+. .|..... ....+++.|.+|.+++.|.|+|+|
T Consensus 3 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V~a 81 (197)
T 3lpw_A 3 MDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVAT-NCHKTSWKVDQLQEGCSYYFRVLA 81 (197)
T ss_dssp CCSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEE-EECSSEEEECCCCTTCEEEEEEEE
T ss_pred CCCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeec-CCCccEEEEcCCCCCCEEEEEEEE
Confidence 57899999999999999999999999876777789999999998766 6766543 457899999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.++...........+.+| ..+. +... +...
T Consensus 82 ~~~~g~~~~s~~~~~~t~~~~p~~p-------~~~~----------~~~~--------------------------~~~~ 118 (197)
T 3lpw_A 82 ENEYGIGLPAETAESVKASERPLPP-------GKIT----------LMDV--------------------------TRNS 118 (197)
T ss_dssp EETTEECCCEECSSCEESCCCCCCC-------SCEE----------EEEE--------------------------CSSC
T ss_pred EcCccccCCCCCccceecCCCCCCC-------cccE----------EEec--------------------------cCCe
Confidence 9999988766554444443333333 1121 2222 3445
Q ss_pred eeeEEeeCCeeec-cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-EEEEEeeceeeeeccccCCceEEEE
Q psy7039 170 LNHGWSINGQVCQ-IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTEFTDNNVHEGKAYEYR 247 (516)
Q Consensus 170 ~~i~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~~~~~~ 247 (516)
..+.|......-. ... .|........+.. ..........+.+.+|.+|..|.++
T Consensus 119 v~l~W~~p~~~~~~~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~ 174 (197)
T 3lpw_A 119 VSLSWEKPEHDGGSRIL------------------------GYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFR 174 (197)
T ss_dssp EEEEECCCSCCTTSCCC------------------------EEEEEEEETTCSCCEEEEEESSSEEEECCCCTTCEEEEE
T ss_pred EEEEecCCCcCCCCccc------------------------EEEEEEEeCCCCceEEeecccccEEEeCCcCCCCEEEEE
Confidence 6778865322100 000 3444433322222 1222344567788999999999999
Q ss_pred EEEEccCCCCCc
Q psy7039 248 VSAVNAAGTEKP 259 (516)
Q Consensus 248 ~~~~~~~g~p~p 259 (516)
+.|++..|...+
T Consensus 175 V~A~n~~G~s~~ 186 (197)
T 3lpw_A 175 VSAQNEKGISDP 186 (197)
T ss_dssp EEEEETTEECCC
T ss_pred EEEEeCCccCCC
Confidence 999998886554
No 173
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.59 E-value=1.8e-14 Score=134.07 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=118.6
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccce--EEEEE--------------------------------ecceee
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR--IKEFV--------------------------------TSTTAS 281 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~--~~~~~--------------------------------~~~~~~ 281 (516)
..+.+|+.+.|.|.+......+.+.+.|.+..... ..+.. ......
T Consensus 12 v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (250)
T 2fbo_J 12 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPT 91 (250)
T ss_dssp EEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCC
T ss_pred eEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcce
Confidence 35678999999998843334788999997643221 11110 001358
Q ss_pred EEEccCCCCCceEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 282 LNIKNSVRKDSGIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 282 l~i~~l~~~d~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...+.++.. .+
T Consensus 92 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~--~~----------------------------- 140 (250)
T 2fbo_J 92 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV--HV----------------------------- 140 (250)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCC--EE-----------------------------
T ss_pred EEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeE--EE-----------------------------
Confidence 9999999999999999999987754 33677777665433321 00
Q ss_pred ccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE----------------------EEEcCCeEEEE
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK----------------------FETSENQTIYR 414 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~----------------------~~~~~~~~~l~ 414 (516)
.......+..|+.+.|.|.+.+.|.|.+.|++++..+....... ... .....|.
T Consensus 141 ---~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~ 216 (250)
T 2fbo_J 141 ---STAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF-SGARNLV 216 (250)
T ss_dssp ---CCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE-ETTTEEE
T ss_pred ---ecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEeccccc-CCccEEE
Confidence 12234566789999999999999999999999988764422110 000 0224799
Q ss_pred EcCceecCCceEEEEEEEcCCCc---eeEEEEE
Q psy7039 415 NKSAKRATDSGSYTIQLVNTVGS---DSASCKV 444 (516)
Q Consensus 415 i~~~~~~~~~g~y~c~a~n~~G~---~s~s~~l 444 (516)
|.++.. .|+|.|+|.|.|..|. ...++.|
T Consensus 217 i~~v~~-~D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 217 IRAAKI-TDAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp ECSCCG-GGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred EecCCc-ccCEEEEEEecCCccccCccceeEEE
Confidence 999999 9999999999996664 4444444
No 174
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.59 E-value=1.1e-13 Score=122.39 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=114.7
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce--eeEEeeCCeeeccCCceEEeecCCeeEEEec
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL--NHGWSINGQVCQIGGRADVQTTKSETVLDIP 201 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 201 (516)
..+.+|+.+.|.|.+. +.+.+ .+.|++++..+...... .....|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~--------------------------~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~ 56 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLN--------------------------DSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD 56 (184)
T ss_dssp EEEEETTEEEEEEEEE--------------------------SCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC
T ss_pred EEEecCCCEEEEEECC--------------------------CCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe
Confidence 5678999999999998 76666 89999999888654322 224466666
Q ss_pred cCCCCCCeeEEEEEEcCCCceEEEEEeece-ee----eeccccCCceEEEEEEEEccCCCC-Cceecccc---cc-----
Q psy7039 202 FCSRSDTGHYSLTLENNLGTATASAHVTGT-EF----TDNNVHEGKAYEYRVSAVNAAGTE-KPKISLDA---LI----- 267 (516)
Q Consensus 202 ~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-~~----~~~~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~---~~----- 267 (516)
+.+|+|.|+|.+.|... ....+.+... .+ ....+.+|..+.+.|.+ .|.| .|.+.|.+ ..
T Consensus 57 --~~~d~G~Y~C~~~n~~~-~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~---~g~p~~~~i~W~~~~~~~~~~~~ 130 (184)
T 3b5h_A 57 --SDDQWGEYSCVFLPEPM-GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS---ESVPPVTDWAWYKITDSEDKALM 130 (184)
T ss_dssp --GGGCCEEEEEEEESTTS-CEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC---CCSSCCCEEEEEECCSSSCEECC
T ss_pred --chhhCeEEEEEEECCcC-cEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE---CCCCCCCeEEEEEcCCCCCEEee
Confidence 68999999999997332 3333333221 11 12346789999999988 7888 79999966 11
Q ss_pred ---cceEEEEEecceeeEEEccCC-CCCceEEEEEEEecCCCcceeEEEEEec
Q psy7039 268 ---GKRIKEFVTSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMADIEVVVVS 316 (516)
Q Consensus 268 ---~~~~~~~~~~~~~~l~i~~l~-~~d~g~y~c~a~n~~g~~~~~~~l~v~~ 316 (516)
..++.+........|.|.++. ..|.|.|+|.|.|..|.....+.|.|..
T Consensus 131 ~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 133444445556799999999 9999999999999999988888887753
No 175
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=129.31 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=102.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+. ..+.+|+.+.|.|.+. +.|. .+.|++++..+....+ .....
T Consensus 5 ~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~~~~-~~~W~k~g~~~~~~~~-~~~~~ 54 (196)
T 2d3v_A 5 KATLW-AEPG-SVISRGNSVTIRCQGT--------------------------LEAQ-EYRLVKEGSPEPWDTQ-NPLEP 54 (196)
T ss_dssp BCEEE-EESC-SEEETTCCEEEEEECC--------------------------TTCC-EEEEEETTCSSCSEEE-CCCSS
T ss_pred CCEEE-eCCC-CcccCCCeEEEEEeCC--------------------------CCCc-EEEEEECCCCCCcccc-cccCC
Confidence 55555 2333 3788999999999998 7765 9999999876643211 11123
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceE----EEEEeec----eeee---eccccCCceEEEEEEEEccCCCCCcee
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTAT----ASAHVTG----TEFT---DNNVHEGKAYEYRVSAVNAAGTEKPKI 261 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~----~~~~~~~----~~~~---~~~l~~g~~~~~~~~~~~~~g~p~p~i 261 (516)
.....|.|.+++.+|+|.|+|.+.|..|... ..+.+.. ..+. ...+.+|+.+.|.|.+ .|.| +.+
T Consensus 55 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~---~~~p-~~~ 130 (196)
T 2d3v_A 55 KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS---RLRF-DRF 130 (196)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE---SSCC-SEE
T ss_pred ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc---CCCC-CEE
Confidence 4567999999999999999999988765322 2222221 1111 2357789999999998 7777 899
Q ss_pred cccccccce--EEE--EEe---cceeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 262 SLDALIGKR--IKE--FVT---STTASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 262 ~W~~~~~~~--~~~--~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
.|.+..... ... ... .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 131 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 131 ILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred EEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 997632211 111 111 2347899999999999999999999754
No 176
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=131.16 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=101.5
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccce---EE-EEEecceeeEEEccCCCCCceEEEEEEEecCCCc--ceeE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR---IK-EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID--MADI 310 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~---~~-~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~--~~~~ 310 (516)
.+.+|+.+.|.|.+ .|.+. .+.|.+..... .. .........|.|.+++..|+|.|+|.|.|..|.. +..+
T Consensus 15 ~v~~G~~v~L~C~~---~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~ 90 (196)
T 2d3v_A 15 VISRGNSVTIRCQG---TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPL 90 (196)
T ss_dssp EEETTCCEEEEEEC---CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCE
T ss_pred cccCCCeEEEEEeC---CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccE
Confidence 56789999999997 56554 88996532111 11 1123467889999999999999999999987643 4457
Q ss_pred EEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE
Q psy7039 311 EVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390 (516)
Q Consensus 311 ~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~ 390 (516)
.|.|...+..|.. . ......+.+|+.+.|.|.+.+.| +.+.|+
T Consensus 91 ~l~V~~~~~~p~i----~--------------------------------~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~ 133 (196)
T 2d3v_A 91 ELVVTGFYNKPTL----S--------------------------------ALPSPVVTSGENVTLQCGSRLRF-DRFILT 133 (196)
T ss_dssp EEEEECSSCCCEE----E--------------------------------C-----------CEEEEEESSCC-SEEEEE
T ss_pred EEEecCCCCCCeE----E--------------------------------ccCCccccCCCcEEEEEEcCCCC-CEEEEE
Confidence 7777664322210 0 11224678999999999999998 899999
Q ss_pred ECCeecCCCCceEEEE--cCCeEEEEEcCceecCCceEEEEEEEcCCC
Q psy7039 391 VNGDEVSPDGRIKFET--SENQTIYRNKSAKRATDSGSYTIQLVNTVG 436 (516)
Q Consensus 391 ~~~~~l~~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G 436 (516)
+++..+.......... ......|.|.++.. .|+|.|+|.|.|..+
T Consensus 134 k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 134 EEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP-SHRWMLRCYGSRRHI 180 (196)
T ss_dssp EC---CCEEEEECEECTTSCEEEEEECCCCBT-TBCEEEEEEEEETTE
T ss_pred ccCCcccccccccccccCCCceeEEEeeecCc-ccCeeEEEEEEccCC
Confidence 9997653221110111 12236899999999 999999999999865
No 177
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=99.57 E-value=1.5e-13 Score=124.25 Aligned_cols=185 Identities=19% Similarity=0.195 Sum_probs=121.4
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEee---cCCcEEEeCCCcCCCeEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVP---AGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~---~~~~~~~i~~l~~~~~y~ 84 (516)
...++|++|.++.+..+++ ++.|+|.+|..+++.+|.+|.|+|+..+. .|....... ...++++|.+|++++.|.
T Consensus 4 ~~~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 82 (209)
T 2vkw_A 4 AQADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 82 (209)
T ss_dssp -CCCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEE
T ss_pred cccCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEE
Confidence 3578999999999998776 79999999976777789999999998776 787665432 236789999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceee
Q psy7039 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVK 164 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (516)
|+|+|.|..|.+.++......+... .+| ..+. .+.+...
T Consensus 83 ~~V~A~n~~G~~~~s~~~~~~T~~~--~~P----~~P~----------~~~~~~~------------------------- 121 (209)
T 2vkw_A 83 VRLAALNGKGLGEISAASEFKTQPV--REP----SAPK----------LEGQMGE------------------------- 121 (209)
T ss_dssp EEEEEEETTEECCCCCCEEEECCCS--CSC----CCCE----------EEEEECT-------------------------
T ss_pred EEEEEEcCCcccCCcccccccccCC--CCC----CCCc----------ccccccc-------------------------
Confidence 9999999999887665433222111 022 1111 1222222
Q ss_pred cCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe--eceeeeeccccCCc
Q psy7039 165 LSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV--TGTEFTDNNVHEGK 242 (516)
Q Consensus 165 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~--~~~~~~~~~l~~g~ 242 (516)
+.....+.|......-.... .|...+....+.......+ ....+.+.+|.+|.
T Consensus 122 -~~~sv~l~W~~p~~~~~~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 176 (209)
T 2vkw_A 122 -DGNSIKVNLIKQDDGGSPIR------------------------HYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNA 176 (209)
T ss_dssp -TSSCEEEEEECCCCTTSCCC------------------------EEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTC
T ss_pred -cCCeEEEEEECcccCCCCCc------------------------eEEEEEECCCCCCceeeecCCCccEEEecCCCCCC
Confidence 44567788876411000001 3444433311111111122 23567888999999
Q ss_pred eEEEEEEEEccCCCCCce
Q psy7039 243 AYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~ 260 (516)
.|.+++.|.+..|...+.
T Consensus 177 ~Y~~~V~A~n~~G~s~~S 194 (209)
T 2vkw_A 177 EYEVYVVAENQQGKSKAA 194 (209)
T ss_dssp EEEEEEEEEETTEECCCE
T ss_pred EEEEEEEEEeCCccCCcc
Confidence 999999999998876554
No 178
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.57 E-value=8.7e-14 Score=125.20 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=111.3
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC-eeeccCCceEEeecCCeeEEEe
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING-QVCQIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~-~~~~~~~~~~~~~~~~~~~l~i 200 (516)
..+.+.+|+.+.|.|.+. |.|.+.+.|++.. ..+. . .....+....|.|
T Consensus 9 ~~~~~~~G~~v~L~C~~~--------------------------g~P~p~i~W~~~~~~~~~--~--~~~~~~~~~~L~I 58 (202)
T 1vca_A 9 SRYLAQIGDSVSLTCSTT--------------------------GCESPFFSWRTQIDSPLN--G--KVTNEGTTSTLTM 58 (202)
T ss_dssp SEEEEETTSCEEEEEEEE--------------------------SCSSCEEEEEETTCCCCS--S--EEEEETTEEEEEE
T ss_pred CcEEEcCCCcEEEEEeec--------------------------CCCCCeEEEECCCCCCcc--c--eEEEcCCccEEEE
Confidence 335566999999999999 9999999998832 2211 1 1222445667999
Q ss_pred ccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEEEEccCCC-CC--ceecccccccce
Q psy7039 201 PFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVSAVNAAGT-EK--PKISLDALIGKR 270 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~~~~~~g~-p~--p~i~W~~~~~~~ 270 (516)
.+++.+|+|.|.|.+.|..|.....+.+.+... ....+.+|+.+.+.|.+ .|. |. +.+.|.+....-
T Consensus 59 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~---~~~~p~~~~~i~W~k~~~~l 135 (202)
T 1vca_A 59 NPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV---ADVYPFDRLEIDLLKGDHLM 135 (202)
T ss_dssp SSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEE---EEEBSGGGEEEEEEETTEEE
T ss_pred CcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEE---CCcCCCCCeEEEEEeCCeEC
Confidence 999999999999999998876655444333211 12457789999999998 443 33 478896532111
Q ss_pred EEEEE---------ecceeeEEEccCCCCCceEEEEEEEecCCCc-------ceeEEEEEecCCC
Q psy7039 271 IKEFV---------TSTTASLNIKNSVRKDSGIYKIEAKNDYGID-------MADIEVVVVSKPG 319 (516)
Q Consensus 271 ~~~~~---------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~-------~~~~~l~v~~~p~ 319 (516)
..... ......|.|.....+|.|.|+|.|.|..|.. +.+..|.|..+|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 136 KSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 11111 1123456788888889999999999987763 3456677776653
No 179
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Probab=99.57 E-value=1.9e-13 Score=137.37 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=51.2
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEe---EEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA---VVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~---~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
+.+|.++++... +..+.|+|.+|. ++++++. |.|+|+..+. .|... .......+.++..+|.+...|.|+|+|
T Consensus 8 l~~P~nv~~~~~-~~~~~L~W~p~~-~~~~~i~-Y~V~y~~~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A 84 (414)
T 3se4_A 8 LKSPQKVEVDII-DDNFILRWNRSD-ESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA 84 (414)
T ss_dssp ---CCCCCEEEE-TTEEEEC-----------CE-EEEEEEESSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEE
T ss_pred CCCCceeEEEEE-CCceEEEEcCCC-CCCCCeE-EEEEEEECCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEE
Confidence 457999999976 567899999985 4445677 9999998654 78753 233344556666788999999999999
Q ss_pred ecCCCCCC
Q psy7039 90 VNAAGPGE 97 (516)
Q Consensus 90 ~n~~g~~~ 97 (516)
.| .+.+.
T Consensus 85 ~n-~~~S~ 91 (414)
T 3se4_A 85 EK-ENTSS 91 (414)
T ss_dssp EE-TTEEE
T ss_pred ee-CCcCC
Confidence 99 54443
No 180
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.56 E-value=1.3e-13 Score=128.24 Aligned_cols=184 Identities=17% Similarity=0.123 Sum_probs=120.0
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc------------------------cceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI------------------------GKRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~------------------------~~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.| .+.+.|.+.. ..++.+... .....|.|.++
T Consensus 12 ~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 12 GVVQPGKSLRLSCAA---SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred EEEecCCcEEEEEEe---ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 456789999999998 5665 6789996521 122333222 34568999999
Q ss_pred CCCCceEEEEEEEecCCC--cceeEEEEEecCCCCCC-CCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI--DMADIEVVVVSKPGPPT-GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~--~~~~~~l~v~~~p~~p~-~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+.+|+|.|+|.|.|..+. ......|.|...+.... .++. . ...++ .+ ...+..
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~--~--------~~~~~------~~--------~~~~~~ 144 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSG--G--------GGSET------TL--------TQSPAT 144 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC----------------------CCC------CE--------EEECSE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccC--C--------CCcce------EE--------EccCCE
Confidence 999999999999997322 22345666665432100 0000 0 00000 00 012345
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEE--CCeec------------CCCCceEEEEcCCeEEEEEcCceecCCceEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEV------------SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ 430 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l------------~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~ 430 (516)
..+.+|+.+.|.|.+.+.+.+.+.|++ ++..+ ....++..........|+|.++.. .|+|.|+|.
T Consensus 145 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~ 223 (247)
T 2ghw_B 145 LSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP-EDFAVYYCQ 223 (247)
T ss_dssp EEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG-GGCEEEEEE
T ss_pred EEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH-HHCEEEEEE
Confidence 678899999999999999989999998 44432 123566665556667899999999 999999999
Q ss_pred EEcCCCce-eEEEEEEEe
Q psy7039 431 LVNTVGSD-SASCKVYVV 447 (516)
Q Consensus 431 a~n~~G~~-s~s~~l~v~ 447 (516)
|.|..+.. .....|.|.
T Consensus 224 a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 224 QRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp ECSSSSCEECCCEEEEEC
T ss_pred EccCCCceEcCCEEEEEC
Confidence 99865442 334566665
No 181
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=128.40 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=108.2
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCC--cceeEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI--DMADIEVVV 314 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~~~l~v 314 (516)
.+.+|+.+.|.|.+ .| +.+.+.|.+.... .......|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 18 ~v~~G~~v~L~C~~---~~-~~~~~~W~k~g~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V 88 (184)
T 2gi7_A 18 LVPLEKPVTLRCQG---PP-GVDLYRLEKLSSS-----RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVA 88 (184)
T ss_dssp EEETTCCEEEEEEC---ST-TCSEEEEEETTTC-----CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEE
T ss_pred cccCCCcEEEEEeC---CC-CCCEEEEEECCcc-----ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEe
Confidence 56789999999997 56 7788999764332 2245678999999999999999999998763 344567777
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCe
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~ 394 (516)
......|. +. ......+..|+.+.|.|.+.+.+ +.+.|++++.
T Consensus 89 ~~~~~~p~--i~----------------------------------~~p~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~ 131 (184)
T 2gi7_A 89 TGVFAKPS--LS----------------------------------AQPGPAVSSGGDVTLQCQTRYGF-DQFALYKEGD 131 (184)
T ss_dssp ESSSCCCE--EE----------------------------------EECCCSSCCTTCEEEEEECSSCC-CEEEEEECCC
T ss_pred cCcCCCCE--EE----------------------------------eCCCceecCCCcEEEEEEcCCCC-cEEEEEECCC
Confidence 55332221 00 00122456899999999987654 5899999998
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.+....... .....|.|.++.. .|.|.|+|.|.|..+.
T Consensus 132 ~~~~~~~~~----~~~~~L~i~~v~~-~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 132 PAPYKNPER----WYRASFPIITVTA-AHSGTYRCYSFSSRDP 169 (184)
T ss_dssp CTTSCCCCE----EEEESSSEEEETT-CCSEEEEEEEECTTST
T ss_pred cCcceecCC----CceEEEEEccCCc-cCCeEEEEEEEeCCCC
Confidence 765422211 2235688999999 9999999999998653
No 182
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.55 E-value=2.2e-14 Score=125.94 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=113.3
Q ss_pred cccCCceEEEEEEEEccCCCCCce-ecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPK-ISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.|.|.+ .|.+.+. +.|.+... . .......|.|.+++.+|+|.|+|.+.|..+ +..+.+.|.
T Consensus 18 ~v~~G~~v~L~C~~---~~~p~~~~~~W~~~~~-~----~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~ 87 (175)
T 1fnl_A 18 SVLEKDSVTLKCQG---AYSPEDNSTQWFHNES-L----ISSQASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVH 87 (175)
T ss_dssp EEETTCCEEEEEEC---CCBTTBCCCEEEETTE-E----EESSCSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEE
T ss_pred eeeCCCcEEEEeeC---CCCCCCcceEEEECCE-E----ccCCceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEe
Confidence 57789999999988 7777666 67866321 1 124677999999999999999999998544 445566665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~ 394 (516)
..+.. + ......+..|+.+.|.|.+.+.+++ .+.|++++.
T Consensus 88 ~~~~~------~---------------------------------~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~ 128 (175)
T 1fnl_A 88 IGWLL------L---------------------------------QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128 (175)
T ss_dssp CSSEE------E---------------------------------ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTE
T ss_pred CCCce------e---------------------------------eCCCceecCCCCEEEEEEcCCCCCceEEEEEECCe
Confidence 32110 0 1122457899999999999987765 999999997
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEEec
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVD 448 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v~~ 448 (516)
.+.. ......|.|.++.. .|.|.|+|.|.|..|. .+..+.|.|.+
T Consensus 129 ~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 129 DRKY--------FHHNSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEE--------EEECCCEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EccC--------CCCCCEEEEcccCh-hhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 6521 11224699999999 9999999999997664 56667787764
No 183
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.55 E-value=4.4e-14 Score=128.92 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=115.0
Q ss_pred cccCCceEEEEEEEEccCCCC-----CceecccccccceEE----------------EEE-----ecceeeEEEccCCCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE-----KPKISLDALIGKRIK----------------EFV-----TSTTASLNIKNSVRK 290 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~~~~~~----------------~~~-----~~~~~~l~i~~l~~~ 290 (516)
.+.+|+.+.|.|.+ .+.+ .+.+.|.+....... ... ......|.|.+++.+
T Consensus 6 ~~~~G~~v~L~C~~---~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 6 VALVDTDATLRCSF---SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCTTSCEEECCBC---CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred EEECCCCeEEEEEe---cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 45789999999987 4443 378899653322111 111 112678999999999
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
|+|.|+|.+.|. +..+..+.|.|...+..|.. .......+..|
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i------------------------------------~~~~~~~v~~G 125 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSM------------------------------------TLEPNKDLRPG 125 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEE------------------------------------ECCC-----CC
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcE------------------------------------EeCCCceecCC
Confidence 999999999986 34444555655544333210 01112356789
Q ss_pred CeEEEEEEE-eeecCCceEEEE-CCeecCCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 371 EEFTITVPF-SGRPKPTPIWTV-NGDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 371 ~~~~l~C~~-~g~p~~~i~W~~-~~~~l~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
+.+.|.|.+ .+.|.+.+.|++ ++..+........... +....|.|.++.. .|.|.|+|.|.|..|....++.|.|
T Consensus 126 ~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g~~~~~~~l~V 204 (222)
T 4i0k_A 126 NMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVL-GANGTYSCLVRNPVLQQDAHGSVTI 204 (222)
T ss_dssp SEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEEC-CTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred ceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEe-CCCCEEEEEEECCCCCCceEEEEEE
Confidence 999999999 888999999998 4444433222222222 2234578999999 9999999999999999999999999
Q ss_pred ecCCC
Q psy7039 447 VDKPS 451 (516)
Q Consensus 447 ~~~p~ 451 (516)
..+|-
T Consensus 205 ~~~p~ 209 (222)
T 4i0k_A 205 TGQPL 209 (222)
T ss_dssp CC---
T ss_pred eCCcc
Confidence 87653
No 184
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.54 E-value=1.7e-13 Score=124.13 Aligned_cols=168 Identities=11% Similarity=0.117 Sum_probs=115.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccc-------------------ccceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-------------------IGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-------------------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+. ...++..........|.|.+++.+|+|.|+
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (213)
T 3mj8_L 10 VSVALGQKATITCSG---DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYY 86 (213)
T ss_dssp EEEETTSCEEEEEEC---SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCCEEEEEEc---CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEE
Confidence 346789999999998 6889999999651 112344434566788999999999999999
Q ss_pred EEEEecCC---CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 297 IEAKNDYG---IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 297 c~a~n~~g---~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|.|..+ .......|.|...+..+.. +.+ ......+..|+.+
T Consensus 87 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-i~~---------------------------------~~~~~~~~~g~~v 132 (213)
T 3mj8_L 87 CQSWDGTNSAWVFGSGTKVTVLGQPNAAPS-VTL---------------------------------FPPSSEELKTNQA 132 (213)
T ss_dssp EEEEETTTTEEEEBCCEEEEEECSCCBCCE-EEE---------------------------------ECCCHHHHTTTEE
T ss_pred EEeccCCcceeEEcCceEEEEeCCCCCCCe-EEc---------------------------------cCCCcccccCCcE
Confidence 99999887 3455667777754321110 000 0011122379999
Q ss_pred EEEEEEeeecC--CceEEEECCeecCCCCc--eEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 374 TITVPFSGRPK--PTPIWTVNGDEVSPDGR--IKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 374 ~l~C~~~g~p~--~~i~W~~~~~~l~~~~~--~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.+.|.++ +.+.|++++..+..+.. ......+ ....|.|..+.. +|.|.|+|.|.|..+....+
T Consensus 133 ~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 133 TLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAW-KSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHH-HSCSCEEEEEEETTEEEEEE
T ss_pred EEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHc-CCCCEEEEEEEECCccEEee
Confidence 99999998643 38999999988754210 0000111 124589999999 99999999999998655443
No 185
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.54 E-value=7.8e-14 Score=131.23 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=120.4
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc---------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--------------- 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--------------- 183 (516)
..+..+.+.+|+.+.|.|.+.. + .+.+.+.+.|++++.....
T Consensus 10 ~~~~~~~v~~G~~v~L~C~~~~-------~----------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 66 (268)
T 3mj6_A 10 VSSPQLRVHVGESVLMGCVVQR-------T----------------EEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66 (268)
T ss_dssp --CCEEEEETTCCEEECCBCCC-------S----------------SCCCEEEEEEEEESSSTTCCEEEEEEETTEEEEC
T ss_pred cCCCceEEecCCcEEEEEEeec-------C----------------CCCceEEEEEEEeCCCCCceEEEEEEcCCCcccC
Confidence 3455688999999999999860 0 0356678888885432211
Q ss_pred ---CCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE--EEeec--eeeeeccccCCceEEEEEEEEccC
Q psy7039 184 ---GGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS--AHVTG--TEFTDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 184 ---~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~--~~~~~--~~~~~~~l~~g~~~~~~~~~~~~~ 254 (516)
..|+.+.. .....+|.|.+++.+|+|.|+|.+.+..+..... ..+.+ .......+.+|..+.|.|.+....
T Consensus 67 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~ 146 (268)
T 3mj6_A 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTE 146 (268)
T ss_dssp GGGTTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESS
T ss_pred ccccCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCC
Confidence 13333321 2334789999999999999999999875544322 22222 222345577899999999885557
Q ss_pred CCCCceecccccccc----eEEE---------------------EE----ecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 255 GTEKPKISLDALIGK----RIKE---------------------FV----TSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 255 g~p~p~i~W~~~~~~----~~~~---------------------~~----~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
+.|.|.+.|.+..+. ...+ .. ......|.|.++..+|+|.|+|.|.|..|.
T Consensus 147 ~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 226 (268)
T 3mj6_A 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE 226 (268)
T ss_dssp SSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce
Confidence 789999999763221 1111 00 134678999999999999999999999888
Q ss_pred cceeEEEEEecCCC
Q psy7039 306 DMADIEVVVVSKPG 319 (516)
Q Consensus 306 ~~~~~~l~v~~~p~ 319 (516)
....+.|.|...++
T Consensus 227 ~~~~~~l~V~~~~p 240 (268)
T 3mj6_A 227 SRKTIVLHVVQDEF 240 (268)
T ss_dssp EEEEEEEEEECC--
T ss_pred EEEEEEEEEEcCCC
Confidence 88888888865443
No 186
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.54 E-value=1.8e-13 Score=128.06 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec--------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ-------------- 182 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~-------------- 182 (516)
+..+.+.+|+.+.|.|.+. +.| .+.+.|+++ +..+.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~ 60 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVS--------------------------GFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYN 60 (257)
T ss_dssp ECCSEECTTSEEEEEEEEE--------------------------SSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEEC
T ss_pred CCCccccCCceEEEEEEEe--------------------------cccCCCccEEEEEeCCCCCcEEEEEEecCCceeeC
Confidence 3446789999999999998 654 577888774 21110
Q ss_pred --cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC-------ce----EEEEEeece--------------e-
Q psy7039 183 --IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG-------TA----TASAHVTGT--------------E- 232 (516)
Q Consensus 183 --~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-------~~----~~~~~~~~~--------------~- 232 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.|..| .. ...+.+... .
T Consensus 61 ~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 140 (257)
T 1f3r_B 61 SALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDI 140 (257)
T ss_dssp SSSSTTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEE
T ss_pred cccCCcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccce
Confidence 1346665542 4567999999999999999999998753 11 112222211 0
Q ss_pred -e----eeccccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEEEecceeeEEEccCC
Q psy7039 233 -F----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSV 288 (516)
Q Consensus 233 -~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~ 288 (516)
+ ....+.+|+.+.|.|.+ .|.+.+.+.|.+.. + .++..........|.|.++.
T Consensus 141 ~~~~~p~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 217 (257)
T 1f3r_B 141 KLTQSPSLLSASVGDRVTLSCKG---SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQ 217 (257)
T ss_dssp CSCEETSEECCCTTCCEEEEEEC---SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCC
T ss_pred EEEccCCEEEEcCCCCEEEEEEE---CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCC
Confidence 1 12346789999999998 77788899997621 1 12222223456689999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
.+|+|.|+|.|.|..........|.|...+.
T Consensus 218 ~~D~G~Y~C~a~n~~~~~g~gt~l~V~~~~~ 248 (257)
T 1f3r_B 218 PEDVATYFCYQYNNGYTFGAGTKLELKAAEQ 248 (257)
T ss_dssp GGGCSEEEEEEESSSEEECCCCEECCSSSCC
T ss_pred hhhCEEEEEEEeCCCCeECCCEEEEEeCCCc
Confidence 9999999999999651112234555554443
No 187
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.54 E-value=1.3e-13 Score=129.08 Aligned_cols=188 Identities=15% Similarity=0.042 Sum_probs=121.2
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 10 GLVRPSETLSLTCTV---SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp SEECTTSEEEEEEEE---ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred ccccCCceEEEEEEE---ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 457889999999998 5553 6889996521 112222221 345689999999
Q ss_pred CCCceEEEEEEEecCCC---------cceeEEEEEecCCCCC-CCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 289 RKDSGIYKIEAKNDYGI---------DMADIEVVVVSKPGPP-TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---------~~~~~~l~v~~~p~~p-~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
.+|+|.|+|.|.|..|. ......|.|...+... ..++... +.++ ..
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~----------~~~~--------------~~ 142 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGG----------GSDI--------------KL 142 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCC----------CCEE--------------CS
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCC----------ccce--------------EE
Confidence 99999999999998641 1123466666543210 0000000 0000 00
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCCc
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDS 424 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~ 424 (516)
...+....+.+|+.+.|.|.+.+.+.+.+.|++ ++..+. ...++..........|+|.++.. .|+
T Consensus 143 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D~ 221 (257)
T 1f3r_B 143 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQP-EDV 221 (257)
T ss_dssp CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCG-GGC
T ss_pred EccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCCh-hhC
Confidence 012334567899999999999999888999999 454321 13566665556667899999999 999
Q ss_pred eEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 425 GSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 425 g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
|.|.|.|.|....-.....|.|...+.
T Consensus 222 G~Y~C~a~n~~~~~g~gt~l~V~~~~~ 248 (257)
T 1f3r_B 222 ATYFCYQYNNGYTFGAGTKLELKAAEQ 248 (257)
T ss_dssp SEEEEEEESSSEEECCCCEECCSSSCC
T ss_pred EEEEEEEeCCCCeECCCEEEEEeCCCc
Confidence 999999999752122234666655443
No 188
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.54 E-value=5.8e-14 Score=113.18 Aligned_cols=101 Identities=28% Similarity=0.434 Sum_probs=87.4
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..|.++|++|.+|++..++++++.|+|.+|..+++.+|.+|.|+++..+. .|..+.......++++|.+|.++..|.|+
T Consensus 3 ~~p~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~fr 82 (111)
T 1x5y_A 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFR 82 (111)
T ss_dssp CSCCSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEE
T ss_pred CCCCCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEE
Confidence 45889999999999999999999999999987777789999999998665 78877655567889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceEec
Q psy7039 87 VRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
|+|.|..|.+.++.....+...
T Consensus 83 V~A~n~~G~s~~S~~~~~v~~~ 104 (111)
T 1x5y_A 83 VVGVNIAGRSEPATLLQPVTIR 104 (111)
T ss_dssp EEEEETTEECCCCCCSSCBCCC
T ss_pred EEEEcCCcCCCCccCCCCEEec
Confidence 9999999999888766555543
No 189
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.53 E-value=2.4e-13 Score=131.27 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=135.4
Q ss_pred eccccCCceEEEEEEEEccCCC-----CCceecccccc----cceEEEEEecc-eeeEEEccCCCCCceEEEEEEEecCC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT-----EKPKISLDALI----GKRIKEFVTST-TASLNIKNSVRKDSGIYKIEAKNDYG 304 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~-----p~p~i~W~~~~----~~~~~~~~~~~-~~~l~i~~l~~~d~g~y~c~a~n~~g 304 (516)
...+..|+.+.+.|.+ .|. +.+.+.|.... ..+......+. ...|+|.++...|+|.|+|.+.+..+
T Consensus 9 ~~~v~~G~~v~l~C~~---~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~ 85 (313)
T 2d9q_B 9 APIVHLGDPITASCII---KQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL 85 (313)
T ss_dssp CSEECTTCCEEEEECC---CTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred CcEEcCCCCEEEEEEE---CCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence 3456789999999998 554 57889995421 11111111122 26799999999999999998865444
Q ss_pred CcceeEEEEEecCCCCCCCCceeeec-cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeec
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTV-TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP 383 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~-~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p 383 (516)
.....+.|.|..+|.+|.. +.+... ..+++.++|.++.+. +.++ .|. |.+...+..
T Consensus 86 ~~~~~~~l~v~~~P~~P~~-l~c~~~~~~~~~~~~W~~~~~~-~~~~-~Y~--------------------l~~~~~~~~ 142 (313)
T 2d9q_B 86 QILDQVELRAGYPPAIPHN-LSCLMNLTTSSLICQWEPGPET-HLPT-SFT--------------------LKSFKSRGN 142 (313)
T ss_dssp EEEEEEEEEECCCCCCCEE-EEEEEETTTTEEEEEEECCSCC-SSCC-EEE--------------------EEEEECCTT
T ss_pred eeEEEEEEccCCCCCCCcc-ceeeECCCCccEEEEecCCCCC-CCce-eEE--------------------EEEEecCCC
Confidence 4445567777666665543 555555 468999999988763 3222 231 121111000
Q ss_pred C--CceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE-EEEEEEe--cCCCCCCCCcc
Q psy7039 384 K--PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA-SCKVYVV--DKPSPPQGPLD 458 (516)
Q Consensus 384 ~--~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~-s~~l~v~--~~p~~P~~~l~ 458 (516)
. ..-.|..-. . ........+...++.+ ...|.|+|.|.|..|.... ...+... .+|.+| .++.
T Consensus 143 ~~~~~~~~~~~~----~------~~~~~~~~~~~~~L~~-~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP-~~~~ 210 (313)
T 2d9q_B 143 CQTQGDSILDCV----P------KDGQSHCSIPRKHLLL-YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPP-MLRT 210 (313)
T ss_dssp SCSCCCCEEEEC----C------CTTCSEEEEEGGGCCS-SSCEEEEEEEEETTEEEECCCEEECGGGGEECCCC-EEEE
T ss_pred cccCCcccccCC----C------CCCCcEEEECcccccc-ceeEEEEEEEECCCCCccCccEEEehhheeccCcC-ceeE
Confidence 0 000111000 0 0011223444456888 8999999999999998532 2222222 357887 6777
Q ss_pred cccc------cCCeEEEEeeCCCCCCCCCcceEEEEEE-ecCCCce
Q psy7039 459 VSDI------TPESCSLSWKPPLDDGGSPITNYVVEKY-ESATGVS 497 (516)
Q Consensus 459 ~~~~------~~~~~~l~W~~p~~~~~~~i~~Y~v~~~-~~~~~~~ 497 (516)
+..+ ..+++.|+|++|. .++..+.+|.|+|+ ..+...+
T Consensus 211 ~~~~~~~~~~~~~~l~l~W~~p~-~~~~~~l~Y~v~y~~~~~~~~w 255 (313)
T 2d9q_B 211 MDPSPEAAPPQAGCLQLSWEPWQ-PGLHINQKCELRHKPQRGEASW 255 (313)
T ss_dssp CCC-------CCSCEEEEEECCG-GGTTSCEEEEEEEEESSSCCCC
T ss_pred EEEecccccCCCCeEEEEECCCC-CCCceeEEEEEEEccCCCCCCc
Confidence 7765 4689999999986 34444679999999 5544443
No 190
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.53 E-value=6.5e-14 Score=131.77 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=118.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccccc-----------------------ceEEE--EEecceeeEEEccCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----------------------KRIKE--FVTSTTASLNIKNSVRK 290 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----------------------~~~~~--~~~~~~~~l~i~~l~~~ 290 (516)
..+.+|+.+.|.|.+....|.+.+.+.|.+... .+..+ ........|.|.+++.+
T Consensus 15 ~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 94 (268)
T 3mj6_A 15 LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA 94 (268)
T ss_dssp EEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGG
T ss_pred eEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHh
Confidence 356789999999988544477888999976221 11111 00123378999999999
Q ss_pred CceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
|+|.|+|.+.|..+.......+.+...+.. +....+..|
T Consensus 95 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~-----------------------------------------p~~~~v~~G 133 (268)
T 3mj6_A 95 DEGIYTCEIRLKNESMVMKKPVELWVLPEE-----------------------------------------PRDLRVRVG 133 (268)
T ss_dssp GCEEEEEEEEETTCCCEEEEEEEEEEECCC-----------------------------------------CSEEEEETT
T ss_pred HCEEEEEEEEecCCcceEEEEEEEEEeccC-----------------------------------------CCccccccC
Confidence 999999999997665533333333322222 234678899
Q ss_pred CeEEEEEEE---eeecCCceEEEECCeec-CCC---------------------CceEEEE--cCCeEEEEEcCceecCC
Q psy7039 371 EEFTITVPF---SGRPKPTPIWTVNGDEV-SPD---------------------GRIKFET--SENQTIYRNKSAKRATD 423 (516)
Q Consensus 371 ~~~~l~C~~---~g~p~~~i~W~~~~~~l-~~~---------------------~~~~~~~--~~~~~~l~i~~~~~~~~ 423 (516)
+.+.|.|.+ .+.|.+.+.|++++... ... .+..+.. ......|.|.++.. .|
T Consensus 134 ~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~-~D 212 (268)
T 3mj6_A 134 DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKE-SD 212 (268)
T ss_dssp CCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCG-GG
T ss_pred CcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCCh-hh
Confidence 999999999 67788999999943211 100 0111100 12345799999999 99
Q ss_pred ceEEEEEEEcCCCceeEEEEEEEecC
Q psy7039 424 SGSYTIQLVNTVGSDSASCKVYVVDK 449 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~s~~l~v~~~ 449 (516)
.|.|+|.|.|..|....++.|.|...
T Consensus 213 ~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 213 QGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 99999999999998888888888643
No 191
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.52 E-value=3.4e-13 Score=122.64 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=83.5
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
......|.|.+++.+|+|.|+|.|.|..| .......|.|...+..+.. +.+.
T Consensus 71 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-~~~~---------------------- 127 (218)
T 3s96_B 71 SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPT-LTVF---------------------- 127 (218)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCE-EEEE----------------------
T ss_pred CCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCce-EEee----------------------
Confidence 34567899999999999999999999876 2334567777654322110 0000
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCce--EEEEcCC---eEEEEEcCceecCC
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRI--KFETSEN---QTIYRNKSAKRATD 423 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~--~~~~~~~---~~~l~i~~~~~~~~ 423 (516)
........|+.+.|.|.+.+ .|.+ .+.|++++..+..+... .....+. .+.|.|..... +|
T Consensus 128 -----------~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~-~d 195 (218)
T 3s96_B 128 -----------PPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQW-RS 195 (218)
T ss_dssp -----------CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHH-HT
T ss_pred -----------CCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHc-cC
Confidence 01112345688999999998 4666 89999999887542111 0001111 13478888887 88
Q ss_pred ceEEEEEEEcCCCceeE
Q psy7039 424 SGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~s~ 440 (516)
.|.|+|.|.|..|....
T Consensus 196 ~g~Y~C~a~n~~~~~~~ 212 (218)
T 3s96_B 196 HNSFTCQVTHEGDTVEK 212 (218)
T ss_dssp CSCEEEEEEETTEEEEE
T ss_pred CCeEEEEEEeCCCcccc
Confidence 99999999999875443
No 192
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.52 E-value=9.8e-14 Score=110.82 Aligned_cols=89 Identities=25% Similarity=0.433 Sum_probs=80.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.|.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 19 ~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 97 (107)
T 3knb_B 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEAYA 97 (107)
T ss_dssp CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCCh-hhCEEEEEEEEECCCEEEE
Confidence 356788999999999999999999999999999999888888888778888999999999 9999999999999999999
Q ss_pred EEEEEEecCC
Q psy7039 441 SCKVYVVDKP 450 (516)
Q Consensus 441 s~~l~v~~~p 450 (516)
++.|.|..+|
T Consensus 98 ~~~l~V~~pP 107 (107)
T 3knb_B 98 AAAVTVLEPP 107 (107)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEEEcCC
Confidence 9999998754
No 193
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.52 E-value=4.5e-14 Score=129.62 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=112.3
Q ss_pred ccccCCceEEEEEEEEccCCCCC-ceecccccccc----------------eEEEEE---------ecceeeEEEccCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEK-PKISLDALIGK----------------RIKEFV---------TSTTASLNIKNSVR 289 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~-p~i~W~~~~~~----------------~~~~~~---------~~~~~~l~i~~l~~ 289 (516)
..+..|+.+.|.|.+ .+.+. +.+.|.+.... ...+.. ....+.|.|.+++.
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~ 86 (231)
T 2pet_A 10 VEVMRGKSVILDCTP---TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86 (231)
T ss_dssp EEEETTCCEEECCCC---BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCG
T ss_pred EEEEcCCCEEEeccc---CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCc
Confidence 456789999999987 67774 89999752211 111110 23335599999999
Q ss_pred CCceEEEEEEEecC-CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 290 KDSGIYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 290 ~d~g~y~c~a~n~~-g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
+|+|.|+|.+.|.. +.....+.|.|...|..|.. . .......+.
T Consensus 87 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~----~-------------------------------~~~~~~~~~ 131 (231)
T 2pet_A 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEV----S-------------------------------PNKGTLSVM 131 (231)
T ss_dssp GGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEE----E-------------------------------ECCSSCCTT
T ss_pred ccCceEEEEEEecCCCceEEEEEEEEEecCCCcEE----e-------------------------------cCCcceeec
Confidence 99999999999987 77777888888877655311 0 011223345
Q ss_pred cCCeE-EEEEEE-eeecCCceEEEECCeecCCCC----ceEEEEc----CC-----eEEEEEcCceecCCceEEEEEEEc
Q psy7039 369 AGEEF-TITVPF-SGRPKPTPIWTVNGDEVSPDG----RIKFETS----EN-----QTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 369 ~g~~~-~l~C~~-~g~p~~~i~W~~~~~~l~~~~----~~~~~~~----~~-----~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.|+.+ .|.|.+ .+.|.+.+.|++++..+.... ++.+... .. ...|.|..... +|.|.|+|.|.|
T Consensus 132 ~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~-dd~g~Y~C~a~n 210 (231)
T 2pet_A 132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD-DRDASFHCAAHY 210 (231)
T ss_dssp CCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGG-GGGCEEEEEEEE
T ss_pred CCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchh-hCCceEEEEEEc
Confidence 78877 999999 899999999999998876544 4443321 11 15688875555 679999999999
Q ss_pred C
Q psy7039 434 T 434 (516)
Q Consensus 434 ~ 434 (516)
.
T Consensus 211 ~ 211 (231)
T 2pet_A 211 S 211 (231)
T ss_dssp E
T ss_pred C
Confidence 4
No 194
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.52 E-value=1.4e-13 Score=124.09 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-------------------
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------------- 183 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------------- 183 (516)
.+.+.+|+.+.|.|... +.+.+.+.|++++.....
T Consensus 8 ~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 61 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNL--------------------------PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61 (208)
T ss_dssp SSEEETTCCEEEEEECC--------------------------CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTC
T ss_pred cceeecCCcEEEEEeCC--------------------------CCCceEEEeccCCCCCccceEEEEecCCCccccCccc
Confidence 36788999999999988 788889999986532211
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCC-ceEEEEEeece------ee--eeccccCCceEEEEEEEEccC
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG-TATASAHVTGT------EF--TDNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-~~~~~~~~~~~------~~--~~~~l~~g~~~~~~~~~~~~~ 254 (516)
..|+.+. .+.+|.|.+++.+|+|.|+|.+.+..+ .......+.+. .+ ....+..|..+.+.|.+ .
T Consensus 62 ~~r~~~~---~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~---~ 135 (208)
T 3r4d_A 62 SGREIIY---SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS---N 135 (208)
T ss_dssp CSSEEEC---TTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC---S
T ss_pred cceeEEe---cCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC---C
Confidence 1122222 234799999999999999999999853 33333322221 11 11227789999999997 6
Q ss_pred CCCCceecccccc---cceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcc-eeEEEEEecCCC
Q psy7039 255 GTEKPKISLDALI---GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPG 319 (516)
Q Consensus 255 g~p~p~i~W~~~~---~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~ 319 (516)
|.| |.+.|.+.. ..............|.|.++..+|.|.|+|.|.|..|... ..+.|.|..++.
T Consensus 136 ~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 136 DIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp CTT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred CCC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 655 799996521 1111122334557899999999999999999999999864 457777666554
No 195
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.52 E-value=3.5e-14 Score=128.77 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=114.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. + .++..........|.|.+++.+|+|.|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3d9a_L 11 LSVTPGNSVSLSCRA---SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (213)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCcEEEEEEC---CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence 456789999999998 78888899996421 1 2344444456679999999999999999
Q ss_pred EEEEecCCCcc-eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.|.|..+... ....+.|...+.+|. +.+. ........|+.+.|
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~~~l 132 (213)
T 3d9a_L 88 CQQSNSWPYTFGGGTKLEIKRADAAPT--VSIF---------------------------------PPSSEQLTSGGASV 132 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHTTEEEE
T ss_pred EeeecCCcceeCCCEEEEEecCCCCce--eEeE---------------------------------CCChhhcCCCcEEE
Confidence 99999876532 234666654332221 0000 00011236889999
Q ss_pred EEEEee-ecCC-ceEEEECCeecCCCCceEE--EEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 376 TVPFSG-RPKP-TPIWTVNGDEVSPDGRIKF--ETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 376 ~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~~--~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.+.| .|.+ .+.|++++..+........ ....+ .+.|.|.++.. .|.|.|+|.|.|..........+
T Consensus 133 ~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 133 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp EEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTCSSCEEEEE
T ss_pred EEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEecccc-CCCCEEEEEEEEccCCCceEEEe
Confidence 999988 5554 7999999987754411100 00111 24799999999 99999999999988765444333
No 196
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.52 E-value=6.8e-14 Score=130.15 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=83.5
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
....|.|.+++.+|+|.|+|.+.|..+.....+.|.|...|....
T Consensus 80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~----------------------------------- 124 (248)
T 3pv7_A 80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL----------------------------------- 124 (248)
T ss_dssp TBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-----------------------------------
T ss_pred CcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEE-----------------------------------
Confidence 356799999999999999999999887777778888876443210
Q ss_pred cccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCC------c-eEEEEcCC-----eEEEEEcCceecCC
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDG------R-IKFETSEN-----QTIYRNKSAKRATD 423 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~------~-~~~~~~~~-----~~~l~i~~~~~~~~ 423 (516)
........|..+.|.|.+.| .|.+ .+.|++++..+.... . ........ ...|.|..... +|
T Consensus 125 ----~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d 199 (248)
T 3pv7_A 125 ----LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQE-DP 199 (248)
T ss_dssp ----ECC--------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CC-CT
T ss_pred ----ecCCccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccc-cC
Confidence 01122345677789999998 7888 999999986442210 0 01111111 24688888888 99
Q ss_pred ceEEEEEEEcCCCce--eEEEEEEE
Q psy7039 424 SGSYTIQLVNTVGSD--SASCKVYV 446 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~--s~s~~l~v 446 (516)
.|.|+|.|.|..+.. ..++.|.|
T Consensus 200 ~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 200 GTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp TCEEEEEEECTTCSSCEEEEECC--
T ss_pred CCEEEEEEECCCCCCCcEEEEEEEE
Confidence 999999999998874 44555666
No 197
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.51 E-value=4.7e-14 Score=131.18 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=107.5
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC---cCceeeEEeeCCeeec-------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS---EPFLNHGWSINGQVCQ------------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~i~W~~~~~~~~------------- 182 (516)
.++..+.+.+|+.+.|.|.+. + .+.+.+.|++++....
T Consensus 7 ~~~~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T 2fbo_J 7 TTHTEVEVHAGGTVELPCSYQ--------------------------LANDTQPPVISWLKGASPDRSTKVFKGNYNWQG 60 (250)
T ss_dssp CSCSEEEECTTSCEEECCEEE--------------------------ECSCCSCCEEEEEEEEETTEEEEEEEEEECCCB
T ss_pred cCCCceEEecCCeEEEEEEeE--------------------------cCCCCCceEEEEEeCCCCCccEEEEeecccccc
Confidence 344568899999999999998 5 7788899998764320
Q ss_pred -----------------cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-------EEEEEeece----ee-
Q psy7039 183 -----------------IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-------TASAHVTGT----EF- 233 (516)
Q Consensus 183 -----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-------~~~~~~~~~----~~- 233 (516)
...|..+.. ....+|.|.+++.+|+|.|+|.+.+..+.. ...+.+... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~ 139 (250)
T 2fbo_J 61 EGLGFVESDSYKESFGDFLGRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139 (250)
T ss_dssp TTBCCCTTSEEEEECGGGTTTEECSC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCE
T ss_pred ccccccccccccccCCCcCceEEecc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEE
Confidence 112222221 124589999999999999999999977643 222222221 11
Q ss_pred ----eeccccCCceEEEEEEEEccCCCCCceecccccccc-------eEE-E------------------EEecceeeEE
Q psy7039 234 ----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK-------RIK-E------------------FVTSTTASLN 283 (516)
Q Consensus 234 ----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~-------~~~-~------------------~~~~~~~~l~ 283 (516)
....+.+|..+.|.|.+ .|.|.|.+.|.+.... ... + ........|.
T Consensus 140 ~~~~~~~~v~~g~~v~L~C~~---~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 216 (250)
T 2fbo_J 140 VSTAEVVQVDEGNDITMTCPC---TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLV 216 (250)
T ss_dssp ECCCSEEECCTTCCEEECCCE---ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEE
T ss_pred EecCceEEecCCCcEEEEEEe---cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEE
Confidence 12334569999999998 7888899999662110 000 0 0011336899
Q ss_pred EccCCCCCceEEEEEEEecCCCc
Q psy7039 284 IKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|.++..+|+|.|+|.|.|..|..
T Consensus 217 i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 217 IRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp ECSCCGGGCEEEEEEEESSSSGG
T ss_pred EecCCcccCEEEEEEecCCcccc
Confidence 99999999999999999976653
No 198
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.51 E-value=1.6e-12 Score=125.43 Aligned_cols=258 Identities=10% Similarity=0.012 Sum_probs=150.4
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-----CceeeEEeeCCeeeccCCceEEeecCC-e
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-----PFLNHGWSINGQVCQIGGRADVQTTKS-E 195 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~~-~ 195 (516)
....+..|++++|.|.+. +. |.+.|.|++++..+.. .+......+. .
T Consensus 8 ~~~~v~~G~~v~l~C~~~--------------------------~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~ 60 (313)
T 2d9q_B 8 SAPIVHLGDPITASCIIK--------------------------QNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQE 60 (313)
T ss_dssp SCSEECTTCCEEEEECCC--------------------------TTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCC
T ss_pred CCcEEcCCCCEEEEEEEC--------------------------CCCCCCCcccceEEEeCCEECCc-cceEEEecCeEE
Confidence 346688999999999999 65 5789999999987753 3322222332 2
Q ss_pred eEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCC-CCCceecccccc----cce
Q psy7039 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG-TEKPKISLDALI----GKR 270 (516)
Q Consensus 196 ~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~----~~~ 270 (516)
+.|.|.+++..|+|.|.|.+.+..+.....+.+ .....++....+.|.. .+ .....+.|.... ...
T Consensus 61 ~~L~i~~~~~~d~g~y~c~~~~~~~~~~~~~~l------~v~~~P~~P~~l~c~~---~~~~~~~~~~W~~~~~~~~~~~ 131 (313)
T 2d9q_B 61 SIITLPHLNHTQAFLSCSLNWGNSLQILDQVEL------RAGYPPAIPHNLSCLM---NLTTSSLICQWEPGPETHLPTS 131 (313)
T ss_dssp EEEEESCCCSSEEEEEEEEESSSSEEEEEEEEE------EECCCCCCCEEEEEEE---ETTTTEEEEEEECCSCCSSCCE
T ss_pred EEEEEeccCCCccceEEeeecCCCceeEEEEEE------ccCCCCCCCccceeeE---CCCCccEEEEecCCCCCCCcee
Confidence 789999999999999999885532221111111 1123556667777766 32 234566674311 111
Q ss_pred EEEEE-------------------ecceeeEEE--ccCCCCCceEEEEEEEecCCCcce-eEEEEEe--cCCCCCCCCce
Q psy7039 271 IKEFV-------------------TSTTASLNI--KNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVV--SKPGPPTGPID 326 (516)
Q Consensus 271 ~~~~~-------------------~~~~~~l~i--~~l~~~d~g~y~c~a~n~~g~~~~-~~~l~v~--~~p~~p~~p~~ 326 (516)
+.+.. ........| .++.+...|.++|.|.|..|.... ...+... ..|.+|.. +.
T Consensus 132 Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~-~~ 210 (313)
T 2d9q_B 132 FTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPML-RT 210 (313)
T ss_dssp EEEEEEECCTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE-EE
T ss_pred EEEEEEecCCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCce-eE
Confidence 22211 011233445 348899999999999999987532 2222222 23444322 44
Q ss_pred eeec------cCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEE-ECCeecCCC
Q psy7039 327 YTTV------TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT-VNGDEVSPD 399 (516)
Q Consensus 327 ~~~~------~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~-~~~~~l~~~ 399 (516)
+... ..+++.|+|++|... +..+.+|. +.|. ..+.. .
T Consensus 211 ~~~~~~~~~~~~~~l~l~W~~p~~~-~~~~l~Y~--------------------------------v~y~~~~~~~---~ 254 (313)
T 2d9q_B 211 MDPSPEAAPPQAGCLQLSWEPWQPG-LHINQKCE--------------------------------LRHKPQRGEA---S 254 (313)
T ss_dssp CCC-------CCSCEEEEEECCGGG-TTSCEEEE--------------------------------EEEEESSSCC---C
T ss_pred EEEecccccCCCCeEEEEECCCCCC-CceeEEEE--------------------------------EEEccCCCCC---C
Confidence 4444 468999999998643 32244441 2222 11100 0
Q ss_pred CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce---eEEEEEEEecCCCCC
Q psy7039 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD---SASCKVYVVDKPSPP 453 (516)
Q Consensus 400 ~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~---s~s~~l~v~~~p~~P 453 (516)
-............+.|.+|.+ ...|.++++|.|..|.+ ..+..+.+.+...+|
T Consensus 255 w~~~~~~~~~~~~~~l~~L~p-~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P 310 (313)
T 2d9q_B 255 WALVGPLPLEALQYELCGLLP-ATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310 (313)
T ss_dssp CEEEEEECSCEEEEEECSCCS-CCCEEEEEEEEECSSCCCCCCCCCCEEECCCC---
T ss_pred cEEcccccCcceEEEEeCCCC-CCeEEEEEEeeECCCCCccCCCCCccceeCCccCC
Confidence 000011123446789999999 99999999999986553 244556666666655
No 199
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.51 E-value=1.1e-13 Score=123.55 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=103.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|... ....+.+...+....|.+. ..+..+.+.+|+.+.|.|.+.
T Consensus 61 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~V~~~p~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~--------- 129 (197)
T 2j8h_A 61 YHQLIIASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTL-EGMGAVHALRGEVVSIKIPFS--------- 129 (197)
T ss_dssp EEEEEECSCCGGGCSEEEEEEEETTEEEE-EEEEEEEEEEEEECCSSCB-TTBEEEEEETTCCCEEEEEEE---------
T ss_pred EEEEEECcCCHHhCEEEEEEEEECCCcee-EEEEEEEcCCCcCCCCccc-cccCeEEEeCCCEEEEEEEEE---------
Confidence 45899999999999999999998876532 1112222222221222222 334567889999999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc-CCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF-CSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+...+....|.|.+ ++.+|+|.|+|.+.|..|.......
T Consensus 130 -----------------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 192 (197)
T 2j8h_A 130 -----------------GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE 192 (197)
T ss_dssp -----------------EESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred -----------------ecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence 8999999999999999888888887777888999999 9999999999999999988766554
Q ss_pred ee
Q psy7039 228 VT 229 (516)
Q Consensus 228 ~~ 229 (516)
+.
T Consensus 193 l~ 194 (197)
T 2j8h_A 193 LD 194 (197)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 200
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.51 E-value=7.7e-14 Score=123.55 Aligned_cols=151 Identities=15% Similarity=0.061 Sum_probs=104.4
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+. ..+.+|+.+.|.|.+. + +.+.+.|++++...
T Consensus 7 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~-~~~~~~W~k~g~~~---------- 47 (184)
T 2gi7_A 7 PKPSLQ-ALPS-SLVPLEKPVTLRCQGP--------------------------P-GVDLYRLEKLSSSR---------- 47 (184)
T ss_dssp CCCEEE-EESC-SEEETTCCEEEEEECS--------------------------T-TCSEEEEEETTTCC----------
T ss_pred CCCeEE-eCCC-ccccCCCcEEEEEeCC--------------------------C-CCCEEEEEECCccc----------
Confidence 456665 3333 3789999999999998 6 67899999987651
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCce----EEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCce
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTA----TASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~----~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~ 260 (516)
......|.|.+++.+|+|.|+|.+.|..|.. ...+.+.. ..+ ....+.+|+.+.|.|.+ .+. ++.
T Consensus 48 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~---~~~-~~~ 123 (184)
T 2gi7_A 48 YQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT---RYG-FDQ 123 (184)
T ss_dssp EESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC---SSC-CCE
T ss_pred cCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEc---CCC-CcE
Confidence 1234689999999999999999999976532 12233211 111 22356789999999986 444 468
Q ss_pred ecccccccce-EEEEEecceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 261 ISLDALIGKR-IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 261 i~W~~~~~~~-~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
+.|.+..... ...........|.|.+++.+|+|.|+|.|.|..+.
T Consensus 124 ~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 124 FALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred EEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence 8886521110 00011234568899999999999999999997643
No 201
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.51 E-value=4.5e-13 Score=125.35 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=117.4
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (256)
T 1nqb_A 10 ELVKPGASVKLSCKA---SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL 86 (256)
T ss_dssp EEECTTCCEEEEEEE---CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eeecCCCcEEEEEEe---ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence 456789999999998 6654 6789996521 1 12222221 34568999999
Q ss_pred CCCCceEEEEEEEecCCC---c--ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI---D--MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~---~--~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
+.+|+|.|+|.+.|..|. . .....|.|...+... ..+
T Consensus 87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~--------------------------------------~~p 128 (256)
T 1nqb_A 87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT--------------------------------------QTP 128 (256)
T ss_dssp CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE--------------------------------------EEC
T ss_pred ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE--------------------------------------ecC
Confidence 999999999999998663 1 123455554322110 123
Q ss_pred ccEEEEcCCeEEEEEEEeeecCC-----ceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKP-----TPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~-----~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
....+..|+.+.|.|.+.+.+.+ .+.|++ ++..+. ...++..........|.|.++.. .|
T Consensus 129 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D 207 (256)
T 1nqb_A 129 LSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA-ED 207 (256)
T ss_dssp SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred cEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCCh-HH
Confidence 44678899999999999988765 899999 454321 13466665555667899999999 99
Q ss_pred ceEEEEEEEcCCCc-eeEEEEEEEe
Q psy7039 424 SGSYTIQLVNTVGS-DSASCKVYVV 447 (516)
Q Consensus 424 ~g~y~c~a~n~~G~-~s~s~~l~v~ 447 (516)
+|.|+|.|.|..+. -.....|.|.
T Consensus 208 sG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 208 LGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CEEEEEEEccCCceEECCCEEEEEE
Confidence 99999999986443 2233556665
No 202
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.51 E-value=7.8e-13 Score=122.83 Aligned_cols=166 Identities=13% Similarity=0.155 Sum_probs=112.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +.| .+.+.|+++. ...
T Consensus 9 p~~~~v~~G~~v~L~C~~~--------------------------g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 62 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAAS--------------------------GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYY 62 (247)
T ss_dssp ECCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEE
T ss_pred cCCEEEecCCcEEEEEEec--------------------------cccCCCceEEEEEeCCCCceEEEEEEecCCCceee
Confidence 3458899999999999999 766 5778898732 111
Q ss_pred --ccCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCCceE----EEEEeece----------------ee----
Q psy7039 182 --QIGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLGTAT----ASAHVTGT----------------EF---- 233 (516)
Q Consensus 182 --~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~----~~~~~~~~----------------~~---- 233 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.|..+... ..+.+... .+
T Consensus 63 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (247)
T 2ghw_B 63 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSP 142 (247)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEEC
T ss_pred CccccCcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccC
Confidence 1124666554 34567899999999999999999998622211 12222211 11
Q ss_pred eeccccCCceEEEEEEEEccCCCCCceeccccc-cc------------------ceEEEEEecceeeEEEccCCCCCceE
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IG------------------KRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~------------------~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
....+.+|+.+.|.|.+ .|.+.+.+.|.+. .+ .++..........|.|.+++.+|+|.
T Consensus 143 ~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 219 (247)
T 2ghw_B 143 ATLSLSPGERATLSCRA---SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAV 219 (247)
T ss_dssp SEEEECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEE
T ss_pred CEEEecCCCcEEEEEEe---CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEE
Confidence 12346789999999998 7888889999662 11 12222223345679999999999999
Q ss_pred EEEEEEecCCCc-ceeEEEEEe
Q psy7039 295 YKIEAKNDYGID-MADIEVVVV 315 (516)
Q Consensus 295 y~c~a~n~~g~~-~~~~~l~v~ 315 (516)
|+|.|.|..+.. .....|.|.
T Consensus 220 Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 220 YYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEccCCCceEcCCEEEEEC
Confidence 999999864332 223466665
No 203
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.51 E-value=2.7e-14 Score=125.47 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=112.6
Q ss_pred cccCCceEEEEEEEEccCCCCCc-eecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP-KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.|.|.+ .|.+.+ .+.|.+.... .......|.|.+++.+|+|.|+|.+.|..+. ..+.+.|.
T Consensus 15 ~v~~G~~v~L~C~~---~~~~~~~~i~W~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s--~~~~l~V~ 84 (176)
T 1f2q_A 15 RIFKGENVTLTCNG---NNFFEVSSTKWFHNGSL-----SEETNSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF 84 (176)
T ss_dssp EEETTCCEEEECCT---TCC----CCEEEETTEE-----CSCCSSEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE
T ss_pred ceecCCcEEEEEeC---CCCCCcceEEEEECCeE-----CCCCceEEEEeccceecCEEEEEEcCCcccc--ccEEEEEe
Confidence 57789999999987 666665 5889653211 1245679999999999999999999886543 34556665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~ 394 (516)
..+. .+ ......+..|+.+.|.|.+. +.|.+.+.|++++.
T Consensus 85 ~~~~------~~---------------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~ 125 (176)
T 1f2q_A 85 SDWL------LL---------------------------------QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGE 125 (176)
T ss_dssp CSSE------EE---------------------------------EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTE
T ss_pred Ccce------ee---------------------------------cCCcceeeCCCCEEEEEEecCCCCceEEEEEECCE
Confidence 2111 00 11224678999999999995 56667999999998
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEEecCCC
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKPS 451 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v~~~p~ 451 (516)
.+... .....|.|.++.. .|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus 126 ~~~~~--------~~~~~L~i~~v~~-~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 126 ALKYW--------YENHNISITNATV-EDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ECCSC--------CCSSEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred EEeee--------cCCCeEEECCCCc-ccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 77422 1234799999999 9999999999997544 56668888887654
No 204
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.51 E-value=4.8e-13 Score=125.14 Aligned_cols=186 Identities=17% Similarity=0.117 Sum_probs=116.9
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc-c----------------------ceEEEEE--ecceeeEEEccCCC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G----------------------KRIKEFV--TSTTASLNIKNSVR 289 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~----------------------~~~~~~~--~~~~~~l~i~~l~~ 289 (516)
...+.+|+.+.|.|.+... ..+.+.+.|.+.. + .++.+.. ......|.|.+++.
T Consensus 17 ~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 95 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGD-SVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSS 95 (257)
T ss_dssp CSEECTTCCEEEEEEEEES-CCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CeEEcCCCcEEEEEEEEcc-cccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCCh
Confidence 3457889999999998321 1357888996521 1 1122221 12345799999999
Q ss_pred CCceEEEEEEEecCCC----cceeEEEEEecCCCC-------CCCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 290 KDSGIYKIEAKNDYGI----DMADIEVVVVSKPGP-------PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~-------p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+|+|.|+|.|.|..+. ......|.|...+.. ...+..+
T Consensus 96 ~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~------------------------------- 144 (257)
T 3gkz_A 96 EDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVL------------------------------- 144 (257)
T ss_dssp GGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCE-------------------------------
T ss_pred hhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEE-------------------------------
Confidence 9999999999987322 223455666544110 0000000
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCC-ceEEEEC--CeecC------------CCCceEEEEcCCeEEEEEcCceecCC
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVN--GDEVS------------PDGRIKFETSENQTIYRNKSAKRATD 423 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~--~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~ 423 (516)
...+....+.+|+.+.|.|.+.+.+.+ .+.|++. +..+. ...++.........+|.|.++.. .|
T Consensus 145 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~D 223 (257)
T 3gkz_A 145 TQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA-ED 223 (257)
T ss_dssp ECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GG
T ss_pred EcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh-HH
Confidence 012345678899999999999998887 8999984 22111 12566666666677899999999 99
Q ss_pred ceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 424 SGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 424 ~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
+|.|.|.|.|..... ..-..|.|...+.+|
T Consensus 224 ~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~~~ 254 (257)
T 3gkz_A 224 AASYFCHQWSSFPFTFGSGTKLEIKRAPHHH 254 (257)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCC----
T ss_pred CEEEEEEEccCCceEEcCCEEEEEEeCCCCC
Confidence 999999998864432 223466676554444
No 205
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=110.40 Aligned_cols=99 Identities=29% Similarity=0.408 Sum_probs=86.3
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..++|++|.+|++..++++++.|+|.+|..+++.+|.+|.|+|+..+. .|..+.......+.++|.+|.++..|.|+|+
T Consensus 4 ~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~ 83 (110)
T 2yuw_A 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83 (110)
T ss_dssp CCCCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEE
T ss_pred CCCCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEE
Confidence 467899999999999999999999999977788889999999998766 8887755556788999999999999999999
Q ss_pred EecCCCCCCCCCCCcceEec
Q psy7039 89 AVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 89 a~n~~g~~~~s~~~~~~~~~ 108 (516)
|.|..|.+.++.....++..
T Consensus 84 A~n~~G~s~~S~~~~~v~~~ 103 (110)
T 2yuw_A 84 AVNAAGASEPKYYSQPILVK 103 (110)
T ss_dssp EEETTEECCCEECSSCEECC
T ss_pred EEcCCcCCCCcCCCCCEEec
Confidence 99999999887766666554
No 206
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.50 E-value=3e-13 Score=120.72 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=79.6
Q ss_pred eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+..|.|.+++.+|+|.|+|.+.|..+.....+.|.|...+..|.. . -
T Consensus 69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i----~----------~------------------- 115 (193)
T 2if7_A 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQV----T----------N------------------- 115 (193)
T ss_dssp TCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEE----E----------E-------------------
T ss_pred CeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeE----e----------c-------------------
Confidence 468999999999999999999998887666777777654332110 0 0
Q ss_pred ccccccEEEEcCC-eEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecC-CceEEEEEEEcCC
Q psy7039 359 DLSIRDMTVLAGE-EFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT-DSGSYTIQLVNTV 435 (516)
Q Consensus 359 ~~~~~~~~v~~g~-~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~-~~g~y~c~a~n~~ 435 (516)
.......|. .+.|.|.+.+. |.+.+.|++++..+.... .|.|..... + |.|.|+|.|.|..
T Consensus 116 ----~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~-~~d~G~Y~C~a~N~~ 179 (193)
T 2if7_A 116 ----HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP-----------NLTVSWDPR-ISSEQDYTCIAENAV 179 (193)
T ss_dssp ----CCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSS-----------EEEEEECTT-TCSCCEEEEEEEETT
T ss_pred ----CceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCC-----------eEEEEeccC-cCCCCcEEEEEECCC
Confidence 001123455 89999999985 478999999987653221 355543333 4 8999999999999
Q ss_pred CceeEE
Q psy7039 436 GSDSAS 441 (516)
Q Consensus 436 G~~s~s 441 (516)
|..+..
T Consensus 180 g~~s~~ 185 (193)
T 2if7_A 180 SNLSFS 185 (193)
T ss_dssp EEEEEE
T ss_pred Cccccc
Confidence 987554
No 207
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.50 E-value=7.1e-13 Score=125.45 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=118.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 22 ~~v~~G~~v~L~C~~---~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 98 (276)
T 3auv_A 22 LSASVGDRVTITCRA---SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 98 (276)
T ss_dssp EECCTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEcCCCCEEEEeEc---CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence 357789999999998 77788999996521 12333333445668999999999999999
Q ss_pred EEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+. ......|.|...+......+. ....-.+.+ ..+....+.+|+.+.|
T Consensus 99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~--~~~~p~~~~----------------------~~p~~~~v~~G~~v~L 154 (276)
T 3auv_A 99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRS--GGGGSEVQL----------------------VESGGGLVQPGGSLRL 154 (276)
T ss_dssp EEECSSSSCCCCCCEEEEC-------------------CCEE----------------------EEECCEEECTTCCEEE
T ss_pred EEEecCCcccccCCEEEEEecCCCccccccc--cccCcceEE----------------------ECCCceEecCCCeEEE
Confidence 999987654 233456666654321000000 000000000 1124567889999999
Q ss_pred EEEEeeec--CCceEEEECC--eec-----------------CCCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 376 TVPFSGRP--KPTPIWTVNG--DEV-----------------SPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~~--~~l-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.|.+.+.+ .+.+.|++++ ... ....++.+... .....|.|.++.. .|+|.|+|.|.
T Consensus 155 ~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~a~ 233 (276)
T 3auv_A 155 SCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA-EDTAVYYCARF 233 (276)
T ss_dssp EEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred EEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh-hHCEEEEEEEE
Confidence 99999876 4799999963 111 12346665542 4556899999999 99999999999
Q ss_pred cCC---Cc--eeEEEEEEEecCCCCC
Q psy7039 433 NTV---GS--DSASCKVYVVDKPSPP 453 (516)
Q Consensus 433 n~~---G~--~s~s~~l~v~~~p~~P 453 (516)
|.. +. -.....|+|...+..+
T Consensus 234 n~~~~~~~~~fg~gt~l~V~~~~~~~ 259 (276)
T 3auv_A 234 VFFLPYAMDYWGQGTLVTVSSASAAA 259 (276)
T ss_dssp CSSTTCSCCCBCCCEEEEEC------
T ss_pred cCcCCcCceEECCCEEEEEccccccc
Confidence 983 22 2233677776544443
No 208
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.50 E-value=1.2e-12 Score=122.46 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred ceeeEEEccCCCCCceEEEEEEEec------------CCCcceeEEEEEecCCCCCCC--------CceeeeccCCeeEE
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKND------------YGIDMADIEVVVVSKPGPPTG--------PIDYTTVTPESVSM 337 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~------------~g~~~~~~~l~v~~~p~~p~~--------p~~~~~~~~~~~~l 337 (516)
....|.|.+++.+|+|.|.|.+.|. .+.......|.|...+..... +..+
T Consensus 83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~---------- 152 (256)
T 3juy_B 83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVL---------- 152 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCE----------
T ss_pred CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEE----------
Confidence 3567999999999999999999986 222333456666554321000 0000
Q ss_pred EecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC-CceEEEEC--CeecC------------CCCce
Q psy7039 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-PTPIWTVN--GDEVS------------PDGRI 402 (516)
Q Consensus 338 ~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~i~W~~~--~~~l~------------~~~~~ 402 (516)
...+....+.+|+.+.|.|.+.+.+. +.+.|++. +..+. ...++
T Consensus 153 ---------------------~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~ 211 (256)
T 3juy_B 153 ---------------------TQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRF 211 (256)
T ss_dssp ---------------------EEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTE
T ss_pred ---------------------EecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcE
Confidence 01235567889999999999998876 89999883 22111 23566
Q ss_pred EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 403 ~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.........+|.|.++.. .|+|.|.|.|.|..+.
T Consensus 212 ~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~~~~~~ 245 (256)
T 3juy_B 212 SGSGSGTDFTLTITRVEP-EDFALYYCQVYGASSY 245 (256)
T ss_dssp EEEEETTEEEEEESSCCG-GGCSEEEEEECCSSCC
T ss_pred EEEccCCEEEEEECCCCH-hHCEEEEEEEeeCCCc
Confidence 666666777899999999 9999999999986543
No 209
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.50 E-value=9e-14 Score=126.03 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=107.6
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.+.+.+.|++. +.... ...|+.
T Consensus 9 ~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 62 (213)
T 3mj8_L 9 LVSVALGQKATITCSGD--------------------------KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFS 62 (213)
T ss_dssp EEEEETTSCEEEEEECS--------------------------STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE
T ss_pred cEEEeCCCCEEEEEEcC--------------------------CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEE
Confidence 68899999999999999 889999999882 21111 234666
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc---e--EEEEEeec-----eeee----eccccCCceEEEEEEEEccC
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT---A--TASAHVTG-----TEFT----DNNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~---~--~~~~~~~~-----~~~~----~~~l~~g~~~~~~~~~~~~~ 254 (516)
+.......+|.|.+++.+|+|.|.|.+.+..+. . ...+.+.. ..+. ...+.+|..+.+.|.+ .
T Consensus 63 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~---~ 139 (213)
T 3mj8_L 63 GSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMI---N 139 (213)
T ss_dssp EEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEE---E
T ss_pred EEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEe---e
Confidence 666677889999999999999999999998772 1 12222221 1111 1123369999999998 4
Q ss_pred CC-CC-ceecccccccce---E----EEEE---ecceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 255 GT-EK-PKISLDALIGKR---I----KEFV---TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 255 g~-p~-p~i~W~~~~~~~---~----~~~~---~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
|. |+ +.+.|.+..... . .... ......|.|.++..+|.|.|+|.|.|..+....+
T Consensus 140 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3mj8_L 140 GFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKS 206 (213)
T ss_dssp EEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEE
T ss_pred ceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEee
Confidence 53 33 489996521100 0 0000 0113458899999999999999999987655443
No 210
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.50 E-value=2.2e-13 Score=123.49 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=108.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3nl4_L 11 VSEPVGGTVTIKCQA---SQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECADAATYY 87 (213)
T ss_dssp EEEETTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred EEEcCCCCEEEEEEe---cCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHHCEEEE
Confidence 456789999999998 77789999996521 23444444556678999999999999999
Q ss_pred EEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 297 IEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 297 c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|.|..+. ......+.|...+.+|. +.+ ......+..|+.+
T Consensus 88 C~~~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~---------------------------------~~~~~~~~~g~~v 132 (213)
T 3nl4_L 88 CQSTYENPTYVSFGGGTEVGVKGDPVAPT--VLI---------------------------------FPPSADLVATGTV 132 (213)
T ss_dssp EEECCSSTTTCEECCCEEEEEECCCBCCE--EEE---------------------------------ECCCHHHHTTSEE
T ss_pred EecCCCCceeEEeCCCeEEEEeCCCcCCe--EEE---------------------------------eCCchhhccCCcE
Confidence 999998763 23345666654332221 000 0011123468899
Q ss_pred EEEEEEee-ecCCceEEEECCeecCCC------------CceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 374 TITVPFSG-RPKPTPIWTVNGDEVSPD------------GRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 374 ~l~C~~~g-~p~~~i~W~~~~~~l~~~------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.|.|.+.+ .|.+.+.|++++..+..+ ..+.. .+.|.|..+.. +|.|.|+|.|.
T Consensus 133 ~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~-~d~g~Y~C~a~ 198 (213)
T 3nl4_L 133 TIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNL-----SSTLTLTSTEY-NSHKEYTCKVT 198 (213)
T ss_dssp EEEEEEEEEBSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEE-----EEEEEEEHHHH-HTCCEEEEEEE
T ss_pred eEEEEEecccCCcEEEEEeCCccCCCCeecccCcccCCCCeEEE-----EEEEEecHHHc-CCCCeEEEEEE
Confidence 99999998 888899999999877532 11221 14699999999 99999999999
No 211
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.50 E-value=3.8e-14 Score=125.78 Aligned_cols=136 Identities=14% Similarity=0.075 Sum_probs=100.6
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEecc-CC
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF-CS 204 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~ 204 (516)
+.+|+++.|.|.+. + +. .+.|++++..+... ...+|.|.+ ++
T Consensus 11 ~~~G~~v~L~C~~~--------------------------~-~~-~i~W~k~g~~l~~~---------~~~~L~I~~~~~ 53 (186)
T 1jbj_A 11 SISGTSVELTCPLD--------------------------S-DE-NLKWEKNGQELPQK---------HDKHLVLQDFSE 53 (186)
T ss_dssp EEETTEEEEECSSC--------------------------C-CT-TCEEEETTEEECSC---------CCSEEEEESCCT
T ss_pred EeCCcEEEEEEeCC--------------------------C-CC-ceEEEECCEECCCC---------CCCEEEECCCCc
Confidence 47899999999998 7 33 49999999988643 234799999 99
Q ss_pred CCCCeeEEEEEEcCCCceEEEEEeeceee--------------------------------eeccccCCceEEEEEEEEc
Q psy7039 205 RSDTGHYSLTLENNLGTATASAHVTGTEF--------------------------------TDNNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 205 ~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------------------------------~~~~l~~g~~~~~~~~~~~ 252 (516)
.+|+|.|+|.+.|..|.......+..... ....+..|..+.|.|.+
T Consensus 54 ~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-- 131 (186)
T 1jbj_A 54 VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-- 131 (186)
T ss_dssp TTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--
T ss_pred cccCEEEEEEEEeCCCcEEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC--
Confidence 99999999999998887444433211100 01234489999999976
Q ss_pred cCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 253 AAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 253 ~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
|.|.+.|.+.... +. ........|.|.++..+|+|.|+|.|.|..|..
T Consensus 132 ----p~p~i~W~k~g~~-i~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 ----TDKTIKWLKDGSI-IS-PLNATKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ----SCSCEEEEETTEE-CC-CSSCCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ----CCCeEEEEECCEE-Cc-ccCCCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 7899999762211 10 011256789999999999999999999998765
No 212
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.50 E-value=3.3e-13 Score=127.69 Aligned_cols=251 Identities=11% Similarity=0.063 Sum_probs=91.0
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--CeeeccCCceEEeecCCeeEE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~~~~~~~~~~~~~~~l 198 (516)
+..+.|.+|+++.|.|... ...+..+.|... ...+. ........|
T Consensus 6 P~~~~V~~G~sv~l~Cs~~--------------------------c~~p~~~~~~t~l~~~~~~-------~~g~~~~~~ 52 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTS--------------------------CDQPKLLGIETPLPKKELL-------LPGNNRKVY 52 (291)
T ss_dssp CSEEEECTTCEEEEEEEEC--------------------------CSSCSEEEEECSSCCCCCC-------CSCSSEEEE
T ss_pred CCccEEcCCCeEEEEEeCC--------------------------CCCCccceEEecCCCcccc-------cCCCceEEE
Confidence 3567899999999999987 433334788642 11110 001223468
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee--------eeccccCCceEEEEEEEEccCCCCCc--eeccccccc
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAGTEKP--KISLDALIG 268 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~--------~~~~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~ 268 (516)
.|.+++.+ |.|.|.+..........+.+.+..+ ....+.+|+.+++.|.+. .+.|.. .++|.+...
T Consensus 53 ~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~--g~~P~~~l~itW~kg~~ 128 (291)
T 1mq8_A 53 ELSNVQED--SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE--GGAPRANLTVVLLRGEK 128 (291)
T ss_dssp EEESCCSC--CCCEEEEECSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEEC--CCBSTTTEEEEEESSSS
T ss_pred EEEecccC--CeEEEEEEcCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEec--CccCCCCcEEEEEECCE
Confidence 88898854 4699999644323333333222211 123478899999999983 334443 589976332
Q ss_pred ceEEEEE--ecceeeEEEccCCCCCceEEEEEEEecCCC--------cceeEEEEEecCCCCCCCCceeeeccCCeeEEE
Q psy7039 269 KRIKEFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYGI--------DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338 (516)
Q Consensus 269 ~~~~~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--------~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~ 338 (516)
.-..... ......|.+.....++.+.|+|.|.|..+. .+....+.|...|..... +
T Consensus 129 ~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~-~------------- 194 (291)
T 1mq8_A 129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ-L------------- 194 (291)
T ss_dssp EEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------
T ss_pred EeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCce-e-------------
Confidence 1111111 112335666666666667999999987553 233455666555433111 0
Q ss_pred ecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCC---ceEEEECCeecCCCCceEEEEcCCeEEEEE
Q psy7039 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP---TPIWTVNGDEVSPDGRIKFETSENQTIYRN 415 (516)
Q Consensus 339 W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~---~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i 415 (516)
.. ...+.+|+.+.|.|.++|.+++ .+.|.++|..+.... ...++ .+.+
T Consensus 195 ---------------------~~--p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~ 245 (291)
T 1mq8_A 195 ---------------------VS--PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSA 245 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------cC--CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----eecCC--eEEE
Confidence 00 1146789999999999998665 599999998775321 11122 2333
Q ss_pred cCc---ee-cCCceEEEEEEEcCCCceeEEEEEEEecCCC
Q psy7039 416 KSA---KR-ATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451 (516)
Q Consensus 416 ~~~---~~-~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~ 451 (516)
..+ .. .++.|.|.|.|.|..........|+|..-|.
T Consensus 246 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~ 285 (291)
T 1mq8_A 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285 (291)
T ss_dssp ----------------------------------------
T ss_pred EEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence 222 23 0346777888887655566677788876544
No 213
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.49 E-value=6.9e-13 Score=123.78 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=113.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeC--Ceee--------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSIN--GQVC-------------- 181 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~--~~~~-------------- 181 (516)
.+..+.+.+|+++.|.|.+. +. +.+.+.|++. +..+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T 3uzq_A 7 QSGAELVKPGASVRLSCTAS--------------------------GFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTK 60 (253)
T ss_dssp ECCCEEECTTCCEEEEEEEC--------------------------SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEE
T ss_pred cCCCeeecCCCcEEEEEEee--------------------------CCcccCceEEEEEeCCCCCCEEEEEEccCCCcce
Confidence 44567899999999999988 43 2556667661 1111
Q ss_pred ---ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----------------eee----
Q psy7039 182 ---QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----------------TEF---- 233 (516)
Q Consensus 182 ---~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----------------~~~---- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+
T Consensus 61 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p 140 (253)
T 3uzq_A 61 YDPKFQGKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTP 140 (253)
T ss_dssp ECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEEC
T ss_pred eCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcC
Confidence 11246665533 3466799999999999999999998554431 1222221 111
Q ss_pred eeccccCCceEEEEEEEEccCCCCCc----eecccccc-c------------------ceEEEEEecceeeEEEccCCCC
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKP----KISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p----~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~ 290 (516)
....+.+|+.+.|.|.+ .+.+.+ .+.|.+.. + .++..........|.|.+++.+
T Consensus 141 ~~~~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 217 (253)
T 3uzq_A 141 ASLAVSLGQRATISCRA---SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEAD 217 (253)
T ss_dssp SEEEECTTSCEEEEEEE---SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeEEEeCCCCEEEEEEe---cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHH
Confidence 12457789999999998 677776 89996521 1 2233333455668999999999
Q ss_pred CceEEEEEEEecCCCcc-eeEEEEEecCCCCCC
Q psy7039 291 DSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPT 322 (516)
Q Consensus 291 d~g~y~c~a~n~~g~~~-~~~~l~v~~~p~~p~ 322 (516)
|+|.|+|.|.|..+..- .-..|.|...+.++.
T Consensus 218 DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~~ 250 (253)
T 3uzq_A 218 DVATYFCQRSNEVPWTFGGGTKLEIKRPLEHHH 250 (253)
T ss_dssp GCEEEEEEECSSSSCCBCCCEEEEECCC-----
T ss_pred HCEEEEEEEccCCCcEECCCEEEEEcCCCCCcc
Confidence 99999999998754432 245677776665543
No 214
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.49 E-value=1.1e-13 Score=125.25 Aligned_cols=167 Identities=15% Similarity=0.184 Sum_probs=111.0
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
...+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 85 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKA---SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY 85 (210)
T ss_dssp EEEECTTSCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred cEEEcCCCCEEEEeeC---CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEE
Confidence 3456789999999998 77788899995521 1233333345566999999999999999
Q ss_pred EEEEEecCCCcc-eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 296 KIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 296 ~c~a~n~~g~~~-~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
+|.|.|..+... ....+.|...+.+|. +.+. .....+..|+.+.
T Consensus 86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g~~v~ 130 (210)
T 1lk3_L 86 FCQQSWNGPLTFGAGTKLELKRADAAPT--VSIF---------------------------------PPSTEQLATGGAS 130 (210)
T ss_dssp EEEECSSSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHTTTEEE
T ss_pred EEEEEcCCCceeCCCEEEEEcCCCcCCe--EEEE---------------------------------CCchhhccCCcEE
Confidence 999998876432 234566654322221 1000 0001123688999
Q ss_pred EEEEEeee-cCC-ceEEEECCeecCCC-Cc-eEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 375 ITVPFSGR-PKP-TPIWTVNGDEVSPD-GR-IKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 375 l~C~~~g~-p~~-~i~W~~~~~~l~~~-~~-~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
|.|.+.|. |.+ .+.|+++|..+... .. .......+ .+.|.|..+.. .|.|.|+|.|.|.......
T Consensus 131 l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~~ 204 (210)
T 1lk3_L 131 VVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADY-ESHNLYTCEVVHKTSSSPV 204 (210)
T ss_dssp EEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEECTTCSSCE
T ss_pred EEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHh-ccCCcEEEEEEecCCCCee
Confidence 99999985 443 89999999877543 10 00111111 13799999999 9999999999998765443
No 215
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.49 E-value=1.9e-13 Score=121.72 Aligned_cols=131 Identities=21% Similarity=0.335 Sum_probs=106.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ...+.+.....+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~---~~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~-------- 128 (194)
T 2a38_A 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATS---TAELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVT-------- 128 (194)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEE--------
T ss_pred CEEEEEECCCCcccCEEEEEEEEcCCceEeE---EEEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEE--------
Confidence 4568999999999999999999987765321 2233333333456655 455678899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+...+...+|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 129 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 190 (194)
T 2a38_A 129 ------------------GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAE 190 (194)
T ss_dssp ------------------EESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------EecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEE
Confidence 89999999999999998888888877777789999999999999999999999988766554
Q ss_pred e
Q psy7039 228 V 228 (516)
Q Consensus 228 ~ 228 (516)
+
T Consensus 191 l 191 (194)
T 2a38_A 191 L 191 (194)
T ss_dssp E
T ss_pred E
Confidence 3
No 216
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.49 E-value=3.4e-13 Score=132.05 Aligned_cols=205 Identities=8% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
...+|.|.+++..|.|.|+|.|.|..+.. .. ...+.+. ....+|.+.... ....+.+|+.+.|.|.+.
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~--~~-~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~------- 145 (344)
T 1za6_B 77 STAYVELSSLRSEDTAVYFCTRSLNMAYW--GQ-GTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVK------- 145 (344)
T ss_dssp TEEEEEECSCCGGGCEEEEEEETTTTCEE--CC-CEEEEECSSCCBCCEEEEEC-CSCTTTSSSEEEEEEEEE-------
T ss_pred CEEEEEECCCCcccCEEEEEEEecCccee--cC-cEEEEEecCCCCCCeEEEcc-ccccccCCCcEEEEEEEe-------
Confidence 45689999999999999999998843221 11 1223332 222455544221 122357899999999999
Q ss_pred CccccccccccCccceeecCc-Cc-eeeEEeeCCeeeccCCce-EEeecC---CeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 147 SPLRALGVRANSTKGWVKLSE-PF-LNHGWSINGQVCQIGGRA-DVQTTK---SETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~-p~-~~i~W~~~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
|. |. +.+.|++++..+...... .....+ ..+.|.|.++..+| |.|+|.+.|..+
T Consensus 146 -------------------g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~ 205 (344)
T 1za6_B 146 -------------------DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 205 (344)
T ss_dssp -------------------EEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred -------------------eEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence 65 54 799999988753211000 011111 12479999998888 999999999887
Q ss_pred ceEEEEEee---------------------------ceeeee----ccccCCceEEEEEEEEccCCC-C-Cceecccccc
Q psy7039 221 TATASAHVT---------------------------GTEFTD----NNVHEGKAYEYRVSAVNAAGT-E-KPKISLDALI 267 (516)
Q Consensus 221 ~~~~~~~~~---------------------------~~~~~~----~~l~~g~~~~~~~~~~~~~g~-p-~p~i~W~~~~ 267 (516)
.......+. ...+.. .....|..+.+.|.+ .|. | .+.+.|.+..
T Consensus 206 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~---~g~~P~~~~v~W~k~g 282 (344)
T 1za6_B 206 NTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLV---KGFYPSDIAVEWESNG 282 (344)
T ss_dssp TEEEEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEE---EEEBSSCCEEEEESSS
T ss_pred CccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEE---eeEECCCeEEEEEECC
Confidence 643322111 011111 112246669999998 564 3 3688996521
Q ss_pred c---ceE--EEEEecc-----eeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 268 G---KRI--KEFVTST-----TASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 268 ~---~~~--~~~~~~~-----~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
. ... ....... ...|.|.....+|.|.|+|.|.|.....
T Consensus 283 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 283 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp SCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred eECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 1 111 1111111 1234555555567999999999976543
No 217
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.49 E-value=6.4e-13 Score=120.82 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=105.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCce---eeEEeeCCeeecc--------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFL---NHGWSINGQVCQI-------------- 183 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~i~W~~~~~~~~~-------------- 183 (516)
+..+.+..|+++.|.|.+. +.+.+ .+.|++++..+..
T Consensus 8 p~~V~~~~G~~v~L~C~~~--------------------------~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~ 61 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLL--------------------------PPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQ 61 (225)
T ss_dssp CSEEEEETTSCEEECCEEC--------------------------SSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTT
T ss_pred CCEEEEecCCCEEEEEEEE--------------------------CCCCCceeEEEEEECCCcceEEEecccceeecccc
Confidence 4457889999999999998 65544 4789987643321
Q ss_pred --CCceEEe-------ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE---eec--e---eeeeccccCCceEEE
Q psy7039 184 --GGRADVQ-------TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH---VTG--T---EFTDNNVHEGKAYEY 246 (516)
Q Consensus 184 --~~~~~~~-------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~---~~~--~---~~~~~~l~~g~~~~~ 246 (516)
..+.... ......+|.|.+++.+|+|.|.|.+.+..+....... +.. . .........+....+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (225)
T 4fmk_A 62 FSKDRLSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVA 141 (225)
T ss_dssp SCTTTEEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEE
T ss_pred ccccceeeeccccccccccCcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeee
Confidence 0111111 1233568999999999999999999987765543321 111 0 112233445666666
Q ss_pred EEEEEccCCCCCceecccccccceEEEE--Eec------ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEE
Q psy7039 247 RVSAVNAAGTEKPKISLDALIGKRIKEF--VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313 (516)
Q Consensus 247 ~~~~~~~~g~p~p~i~W~~~~~~~~~~~--~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~ 313 (516)
.|.+. .+.|++.+.|........... ... ....|.|.++...|+|.|+|.|.|..+.......+.
T Consensus 142 ~c~~~--~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~ 214 (225)
T 4fmk_A 142 RCVST--GGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT 214 (225)
T ss_dssp EEEEE--EEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred eeeec--CCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence 66552 667888888865332222111 111 124699999999999999999999988765544443
No 218
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.49 E-value=6.6e-13 Score=108.75 Aligned_cols=106 Identities=31% Similarity=0.551 Sum_probs=91.0
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEe-ecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVV-PAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~-~~~~~~~~i~~l~ 78 (516)
+..++...+.++|++|.++++..++.+++.|+|.++ .+++.+|.+|.|+|+..+ +.|..+... ....+.++|.+|.
T Consensus 6 ~~~~~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~ 84 (121)
T 1x4z_A 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLE 84 (121)
T ss_dssp CCCCCCSSSCCCCCCCCCCEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCC
T ss_pred ccceeccCcCCCCccCCCCEEEEccCCEEEEEEECC-CCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCC
Confidence 345677888999999999999999999999999965 578889999999999865 488877544 5678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
++..|.|+|+|.|..|.+.++.....++..
T Consensus 85 p~t~Y~frV~A~n~~G~s~~S~~~~~v~~~ 114 (121)
T 1x4z_A 85 KGISYKFRVRALNMLGESEPSAPSRPYVVS 114 (121)
T ss_dssp TTCEEEEEEEEEETTEECCCCCCCCCEECC
T ss_pred CCCEEEEEEEEEcCCCcCCCcCCCCCEEcC
Confidence 999999999999999999988777666553
No 219
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.48 E-value=4.6e-13 Score=109.49 Aligned_cols=99 Identities=24% Similarity=0.457 Sum_probs=86.2
Q ss_pred CcceeccCCCCCCCCCcceEEE-eeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~-~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|+.+.+++..+.|++|.++.+. .+++++|.|+|.+|..+++.+|.+|.|+++..+. .|..+.. ...++++|.+|+
T Consensus 6 S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~ 83 (120)
T 2crm_A 6 SGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLN 83 (120)
T ss_dssp CSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCSEEEECSCC
T ss_pred cCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEe--ccccEEEECCCC
Confidence 6778888999999999999988 7889999999999977777889999999998654 7877644 468899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
++..|.|+|+|.|..|.+.++...
T Consensus 84 p~t~Y~frV~A~n~~G~s~~S~~~ 107 (120)
T 2crm_A 84 PGCFYRLRVYCISDGGQSAVSESL 107 (120)
T ss_dssp TTSCEEEEEEEEETTEECCCCCCC
T ss_pred CCCEEEEEEEEEcCCccCCCcccE
Confidence 999999999999999988876543
No 220
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.48 E-value=2.9e-13 Score=111.36 Aligned_cols=105 Identities=28% Similarity=0.442 Sum_probs=88.7
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEe----CCCCeEEeEEe--ecCCcEEEeC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD----KTGNWEKAVVV--PAGETSCTVP 75 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~----~~~~~~~~~~~--~~~~~~~~i~ 75 (516)
+.++....+.++|++|.+|++..+++++|.|+|.+| .+++++|.+|.|+|+. ..+.|..+... ....++++|.
T Consensus 6 s~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~ 84 (124)
T 1wis_A 6 SGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVP 84 (124)
T ss_dssp SCCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECC-CCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEEC
T ss_pred cccccccCCCCCCccCCCCEEEEecCCEEEEEEECC-CCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeC
Confidence 456677788999999999999999999999999887 4788899999999987 23388776544 4678899999
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCCCcceEe
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
+|+++..|.|+|+|.|..|.+.++.....+..
T Consensus 85 ~L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T 116 (124)
T 1wis_A 85 DLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116 (124)
T ss_dssp SCCTTSEECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred CCCCCCEEEEEEEEEECCccCCCcCCccceEc
Confidence 99999999999999999999988876654443
No 221
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.47 E-value=6.4e-13 Score=124.22 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=117.7
Q ss_pred cccCCceEEEEEEEEccCCCC--Cceeccccc-cc-----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE--KPKISLDAL-IG-----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~-~~-----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+ .|.+ .+.+.|.+. .+ .++.+... .....|.|.+++
T Consensus 13 ~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 89 (256)
T 3umt_A 13 LVKPGASVKISCKT---SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT 89 (256)
T ss_dssp EECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEcCCCCEEEEEEE---ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence 47789999999997 4544 678888541 11 12222221 235569999999
Q ss_pred CCCceEEEEEEEec----CCCcceeEEEEEecCCCC---------CCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 289 RKDSGIYKIEAKND----YGIDMADIEVVVVSKPGP---------PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 289 ~~d~g~y~c~a~n~----~g~~~~~~~l~v~~~p~~---------p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.+|+|.|.|.+.|. .+.......|.|...+.. ...+..+.
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 142 (256)
T 3umt_A 90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT--------------------------- 142 (256)
T ss_dssp GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE---------------------------
T ss_pred cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE---------------------------
Confidence 99999999999987 222333456666543110 00000000
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCceec
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
..+....+..|+.++|.|.+.+.+.+.+.|++.. ..+. ...++..........|+|.++..
T Consensus 143 ----~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~- 217 (256)
T 3umt_A 143 ----QSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES- 217 (256)
T ss_dssp ----EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG-
T ss_pred ----cCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh-
Confidence 1234567889999999999999988899999842 1111 23567666666777899999999
Q ss_pred CCceEEEEEEEcCCCce-eEEEEEEEecCC
Q psy7039 422 TDSGSYTIQLVNTVGSD-SASCKVYVVDKP 450 (516)
Q Consensus 422 ~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p 450 (516)
.|+|.|.|.|.|..+.. .....|.|...+
T Consensus 218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 218 EDFVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp GGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred hHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 99999999999875542 334677776543
No 222
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.47 E-value=9.4e-13 Score=127.78 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=136.2
Q ss_pred cCCceEEEEEEEEccCCC-CCceecccccccc--eEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 239 HEGKAYEYRVSAVNAAGT-EKPKISLDALIGK--RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~-p~p~i~W~~~~~~--~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
..|..+.|.|.+ .+. +.+.+.|...... ..........+.|.|.++...|+|.|+|. ..|.....+.|.|.
T Consensus 19 ~~G~~v~l~C~~---~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~V~ 92 (325)
T 1n26_A 19 LPGDSVTLTCPG---VEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVD 92 (325)
T ss_dssp CTTCCEEEECTT---SCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSSSCSCEEEEEEC
T ss_pred CCCCcEEEEeCC---CCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCCEEeeeEEEEec
Confidence 589999999987 544 4789999652211 00011123357899999999999999999 36777788999998
Q ss_pred cCCCCCCCCceeee-ccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECC
Q psy7039 316 SKPGPPTGPIDYTT-VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNG 393 (516)
Q Consensus 316 ~~p~~p~~p~~~~~-~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~ 393 (516)
.+|..|. +.... ....++.++|.++.+.+ .+ .+|. +.+... +.. ...|...-
T Consensus 93 ~pP~~P~--l~c~~~~~~~~~~c~W~~~~~~~-~~-~~y~--------------------l~~~~~~~~~--~~~~~~~c 146 (325)
T 1n26_A 93 VPPEEPQ--LSCFRKSPLSNVVCEWGPRSTPS-LT-TKAV--------------------LLVRKFQNSP--AEDFQEPC 146 (325)
T ss_dssp CCCCCCC--CEEEBSSTTSCEEEEECCSSCCC-TT-CEEE--------------------EEEEEESSSS--CEEEEEEE
T ss_pred cCCCCCc--eeEEeecCCCcEEEEECCCCCCC-CC-ceEE--------------------EEEEEccCCC--CCcccccC
Confidence 8777664 55543 34679999999776532 21 2221 111100 000 00110000
Q ss_pred eecCCCCceEEEEcCCeEEEEEcCce-ecCCceEEEEEEEcCCCceeE-EEEEEE--ecCCCCCCCCcccccccC--CeE
Q psy7039 394 DEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSA-SCKVYV--VDKPSPPQGPLDVSDITP--ESC 467 (516)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~l~i~~~~-~~~~~g~y~c~a~n~~G~~s~-s~~l~v--~~~p~~P~~~l~~~~~~~--~~~ 467 (516)
.........++.|..+. . ...|.|+|.|.|..|.... ...+.+ ..+|.+| .++.+..++. .++
T Consensus 147 ---------~~~~~~~~~~c~i~~~~~~-~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP-~~l~v~~~~~~~~sv 215 (325)
T 1n26_A 147 ---------QYSQESQKFSCQLAVPEGD-SSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPP-ANITVTAVARNPRWL 215 (325)
T ss_dssp ---------EEETTTTEEEEEECCCTTC-CCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCC-EEEEEEECTTCTTCE
T ss_pred ---------CCCCCCCCEEEEECCCccc-CcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCC-cceEEEEecCCCCEE
Confidence 00011223456676654 5 6889999999999998532 223222 2467877 7788877654 599
Q ss_pred EEEeeCCCCC-CCCCcceEEEEEEecCCCce
Q psy7039 468 SLSWKPPLDD-GGSPITNYVVEKYESATGVS 497 (516)
Q Consensus 468 ~l~W~~p~~~-~~~~i~~Y~v~~~~~~~~~~ 497 (516)
.|+|++|... .+..+.+|.|+|+..+...+
T Consensus 216 ~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W 246 (325)
T 1n26_A 216 SVTWQDPHSWNSSFYRLRFELRYRAERSKTF 246 (325)
T ss_dssp EEEEECCTTCCCSSSCEEEEEEEEETTCSCC
T ss_pred EEEECCCCccCCCcEeEEEEEEEEeCCCCCC
Confidence 9999998642 45678999999999865443
No 223
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.47 E-value=2.5e-13 Score=107.06 Aligned_cols=92 Identities=26% Similarity=0.447 Sum_probs=79.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC--CceEE
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--GRADV 189 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--~~~~~ 189 (516)
.||.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+... .++.+
T Consensus 4 ~PP~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~P~p~v~W~k~g~~i~~~~~~~~~~ 56 (100)
T 3knb_A 4 IPPKIE-ALPSDISIDEGKVLTVACAFT--------------------------GEPTPEVTWSCGGRKIHSQEQGRFHI 56 (100)
T ss_dssp EEEEEC-CCCSEEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEECCTTGGGTEEE
T ss_pred CCCEEE-eCCCcEEEeCCCeEEEEEEEE--------------------------EecCCEEEEEECceEeeeeccceeee
Confidence 467776 677889999999999999999 9999999999999998754 46777
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
...+...+|.|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 57 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 97 (100)
T 3knb_A 57 ENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97 (100)
T ss_dssp EECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence 77788889999999999999999999999998776665443
No 224
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.47 E-value=8.9e-13 Score=123.02 Aligned_cols=183 Identities=16% Similarity=0.084 Sum_probs=119.8
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceeccccc-cc-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDAL-IG-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~-~~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|. +.+.+.|.+. .+ .++.+... .....|.|.++
T Consensus 11 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 87 (253)
T 3uzq_A 11 ELVKPGASVRLSCTA---SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL 87 (253)
T ss_dssp EEECTTCCEEEEEEE---CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred eeecCCCcEEEEEEe---eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence 346789999999997 553 3678888651 11 12222222 23556999999
Q ss_pred CCCCceEEEEEEEecCCCc-ceeEEEEEecCCCCCC--------CCceeeeccCCeeEEEecCCCCCCCCceeecccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPT--------GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITS 358 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~--------~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~ 358 (516)
+.+|+|.|+|.+.|..+.. .....+.|...+.... .+..+.
T Consensus 88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~------------------------------ 137 (253)
T 3uzq_A 88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT------------------------------ 137 (253)
T ss_dssp CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE------------------------------
T ss_pred CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE------------------------------
Confidence 9999999999999865543 3345666654211000 000000
Q ss_pred ccccccEEEEcCCeEEEEEEEeeecCC----ceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCcee
Q psy7039 359 DLSIRDMTVLAGEEFTITVPFSGRPKP----TPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKR 420 (516)
Q Consensus 359 ~~~~~~~~v~~g~~~~l~C~~~g~p~~----~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~ 420 (516)
..+....+.+|+.+.|.|.+.+.+.+ .+.|+++. ..+. ...++..........|+|.++..
T Consensus 138 -~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 216 (253)
T 3uzq_A 138 -QTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEA 216 (253)
T ss_dssp -EECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred -CcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCH
Confidence 12345678899999999999988776 89999852 2111 12566666666677899999999
Q ss_pred cCCceEEEEEEEcCCCce-eEEEEEEEecCCCCC
Q psy7039 421 ATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPP 453 (516)
Q Consensus 421 ~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~p~~P 453 (516)
.|+|.|.|.|.|..+.. ..-..|.|...+.+|
T Consensus 217 -~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~ 249 (253)
T 3uzq_A 217 -DDVATYFCQRSNEVPWTFGGGTKLEIKRPLEHH 249 (253)
T ss_dssp -GGCEEEEEEECSSSSCCBCCCEEEEECCC----
T ss_pred -HHCEEEEEEEccCCCcEECCCEEEEEcCCCCCc
Confidence 99999999999976542 334677777655544
No 225
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.47 E-value=1.8e-12 Score=122.72 Aligned_cols=171 Identities=15% Similarity=0.147 Sum_probs=114.7
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe-----eec---------cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ-----VCQ---------IG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~-----~~~---------~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++. .+. ..
T Consensus 17 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~ 70 (276)
T 3auv_A 17 QSPSSLSASVGDRVTITCRAS--------------------------QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVP 70 (276)
T ss_dssp EECSEEECCTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCeEEEcCCCCEEEEeEcC--------------------------CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCC
Confidence 456678899999999999999 77888899987431 111 13
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece-------------------eeeeccccCCc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT-------------------EFTDNNVHEGK 242 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~-------------------~~~~~~l~~g~ 242 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... ......+.+|+
T Consensus 71 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~ 150 (276)
T 3auv_A 71 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGG 150 (276)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTC
T ss_pred CCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCC
Confidence 46666656667799999999999999999999864431 112222110 11234567899
Q ss_pred eEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccCCCCCceE
Q psy7039 243 AYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNSVRKDSGI 294 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l~~~d~g~ 294 (516)
.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++.+|+|.
T Consensus 151 ~v~L~C~~---~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~ 227 (276)
T 3auv_A 151 SLRLSCAA---SGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAV 227 (276)
T ss_dssp CEEEEEEE---ESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred eEEEEEEe---cCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEE
Confidence 99999998 5555 5889997631 1 12222211 234589999999999999
Q ss_pred EEEEEEecC---CCc--ceeEEEEEecCC
Q psy7039 295 YKIEAKNDY---GID--MADIEVVVVSKP 318 (516)
Q Consensus 295 y~c~a~n~~---g~~--~~~~~l~v~~~p 318 (516)
|+|.|.|.. +.. .....|.|...+
T Consensus 228 Y~C~a~n~~~~~~~~~fg~gt~l~V~~~~ 256 (276)
T 3auv_A 228 YYCARFVFFLPYAMDYWGQGTLVTVSSAS 256 (276)
T ss_dssp EEEEEECSSTTCSCCCBCCCEEEEEC---
T ss_pred EEEEEEcCcCCcCceEECCCEEEEEcccc
Confidence 999999973 221 123566665544
No 226
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=99.47 E-value=4.9e-12 Score=113.90 Aligned_cols=93 Identities=26% Similarity=0.448 Sum_probs=75.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEe-EEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKA-VVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~-~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.++|++|.+|++.. +++++.|+|.+| .+++++|.+|.|+|+... +.|... .......+.+.+ +|.+++.|.|+|
T Consensus 3 ~~~P~~P~~~~~~~-~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V 79 (205)
T 1cfb_A 3 QDVPNAPKLTGITC-QADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRV 79 (205)
T ss_dssp CCCCCCCEEEEEEE-CSSEEEEEEECC-CCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEE
T ss_pred ccCCCCCCCcEEEe-cCCEEEEEEECc-ccCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEE
Confidence 57899999999999 999999999998 467788999999998753 478644 344456778888 999999999999
Q ss_pred EEecCCCCCCCCCCCcceE
Q psy7039 88 RAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~ 106 (516)
+|.|..|.+.++.....+.
T Consensus 80 ~A~n~~G~~~~s~~~~~~~ 98 (205)
T 1cfb_A 80 IAFNKIGASPPSAHSDSCT 98 (205)
T ss_dssp EEEETTEECCCCCCCCCEE
T ss_pred EEEECCccCCCCCCceeEE
Confidence 9999999888774333333
No 227
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.47 E-value=1.2e-13 Score=125.97 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=109.0
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-----eeeEEeeCCeeec-------------cC
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-----LNHGWSINGQVCQ-------------IG 184 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~i~W~~~~~~~~-------------~~ 184 (516)
.+.+.+|+.+.|.|.+. +.+. +.+.|++++.... ..
T Consensus 4 ~v~~~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~ 57 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFS--------------------------PEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYS 57 (222)
T ss_dssp CCCCCTTSCEEECCBCC--------------------------CCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSC
T ss_pred CEEEECCCCeEEEEEec--------------------------CCCCCCCCceEEEEEECCCccEEEEEcCCccccccee
Confidence 35678999999999998 5443 6788887653321 12
Q ss_pred CceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece------ee---eeccccCCceEEEEEEEEc
Q psy7039 185 GRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT------EF---TDNNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 185 ~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~------~~---~~~~l~~g~~~~~~~~~~~ 252 (516)
.|..+.. .....+|.|.+++.+|+|.|+|.+.+.. .......+.+. .+ ....+..|..+.+.|.+.
T Consensus 58 ~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~- 135 (222)
T 4i0k_A 58 NRTALFPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSY- 135 (222)
T ss_dssp SCEECCTTTGGGTBCCEEECSCCGGGCSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEE-
T ss_pred CcEEEecccccCCeEEEEECCcccccCEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecc-
Confidence 2333221 1125689999999999999999999753 22222211111 11 122466799999999984
Q ss_pred cCCCCCceecccccccc----eEEE-EEecc---eeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCC
Q psy7039 253 AAGTEKPKISLDALIGK----RIKE-FVTST---TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320 (516)
Q Consensus 253 ~~g~p~p~i~W~~~~~~----~~~~-~~~~~---~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~ 320 (516)
.|.|.|.+.|.+..+. .... ..... ...|.|.++..+|.|.|+|.|.|..|....++.|.|..+|..
T Consensus 136 -~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 210 (222)
T 4i0k_A 136 -QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT 210 (222)
T ss_dssp -EEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred -cccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence 4778899999652221 1111 11112 234789999999999999999999999999999998877654
No 228
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=121.26 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=111.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee-------------ecc
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV-------------CQI 183 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~-------------~~~ 183 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++.. .. ...
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 61 (256)
T 3tf7_C 8 QPDARVTVSEGASLQLRCKYS--------------------------YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQG 61 (256)
T ss_dssp CSCSEEEEETTSCEEECCEEE--------------------------CSSCCEEEEEEECTTSCCEEEEEECSSCSEEEC
T ss_pred ecCceEEecCCCeEEEEEEeC--------------------------CCCCceEEEEEECCCCCeEEEEEEccCCccccc
Confidence 455678899999999999999 7788889998722 11 112
Q ss_pred CCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeec---------------------eee-
Q psy7039 184 GGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTG---------------------TEF- 233 (516)
Q Consensus 184 ~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~---------------------~~~- 233 (516)
..|+.+. ......+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+
T Consensus 62 ~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (256)
T 3tf7_C 62 VNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT 141 (256)
T ss_dssp STTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE
T ss_pred CCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE
Confidence 3455553 34556789999999999999999999865421 11122221 011
Q ss_pred ---eeccccCCceEEEEEEEEccCCCCCceeccccc-ccceEEEEE----------------------ecceeeEEEccC
Q psy7039 234 ---TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGKRIKEFV----------------------TSTTASLNIKNS 287 (516)
Q Consensus 234 ---~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~~~~~~~----------------------~~~~~~l~i~~l 287 (516)
....+.+|+.+.|.|.+ .+. .+.+.|.+. .+....... ......|.|.++
T Consensus 142 ~~p~~~~v~~G~~v~L~C~~---~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v 217 (256)
T 3tf7_C 142 QSPRNKVTVTGENVTLSCRQ---TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESA 217 (256)
T ss_dssp ESCSEEEEETTCCEEECEEE---CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSC
T ss_pred ecCCEEEEeCCCcEEEEEEc---CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCC
Confidence 12245689999999998 454 678999652 111111111 224558999999
Q ss_pred CCCCceEEEEEEEecCCCcce--eEEEEEec
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMA--DIEVVVVS 316 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~--~~~l~v~~ 316 (516)
+.+|+|.|+|.|.|..|.... -..|.|..
T Consensus 218 ~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 218 SPSQTSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp CGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence 999999999999998664322 23455543
No 229
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.47 E-value=9.8e-13 Score=121.40 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceee---------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVC--------------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~--------------- 181 (516)
..+..+.+.+|+.+.|.|. . +.|.+.+.|+++ +...
T Consensus 5 q~p~~~~v~~G~~v~L~C~-~--------------------------~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~ 57 (238)
T 2p1y_A 5 QSPRNKVAVTGGKVTLSCN-Q--------------------------TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKG 57 (238)
T ss_dssp EECSEEEEETTCCEEEEEE-E--------------------------CSCCSEEEEEEEETTTEEEEEEEESSTTCCEEC
T ss_pred ECccceEEeCCCEEEEEee-c--------------------------CCCCccEEEEEECCCCCcEEEEEEecCcceeCC
Confidence 3456688999999999999 7 778889999884 2111
Q ss_pred ccCCceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCCCce-------EEEEEeece-------------ee----eec
Q psy7039 182 QIGGRADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNLGTA-------TASAHVTGT-------------EF----TDN 236 (516)
Q Consensus 182 ~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-------~~~~~~~~~-------------~~----~~~ 236 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.+..|.. ...+.+... .+ ...
T Consensus 58 ~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~ 137 (238)
T 2p1y_A 58 DIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSL 137 (238)
T ss_dssp SSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEE
T ss_pred CccceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceE
Confidence 1134555543 3345689999999999999999999875421 111222110 11 123
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccc-c------------------ceEEEE--EecceeeEEEccCCCCCceEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G------------------KRIKEF--VTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~------------------~~~~~~--~~~~~~~l~i~~l~~~d~g~y 295 (516)
.+.+|+.+.|.|.+ .|.+.|.+.|.+.. + .++.+. .......|.|.+++.+|+|.|
T Consensus 138 ~v~~G~~v~L~C~~---~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y 214 (238)
T 2p1y_A 138 TVWEGETAILNCSY---ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY 214 (238)
T ss_dssp EEETTSCEEEEEEC---CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEE
T ss_pred EEeCCCeEEEEEEE---ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEE
Confidence 46789999999998 78888999996531 1 111111 122356899999999999999
Q ss_pred EEEEEecC
Q psy7039 296 KIEAKNDY 303 (516)
Q Consensus 296 ~c~a~n~~ 303 (516)
+|.|.|..
T Consensus 215 ~C~a~n~~ 222 (238)
T 2p1y_A 215 FCAAIDTN 222 (238)
T ss_dssp EEEEEETT
T ss_pred EEEEeeCC
Confidence 99999973
No 230
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.47 E-value=1.6e-13 Score=109.58 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.||.|. ..+.++.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+..
T Consensus 12 ~pP~f~-~~p~~~~v~~G~~~~l~C~~~--------------------------G~P~p~v~W~k~g~~l~~~~~~~~~~ 64 (107)
T 3knb_B 12 SPPCFL-RFPRPVRVVSGAEAELKCVVL--------------------------GEPPPVVVWEKGGQQLAASERLSFPA 64 (107)
T ss_dssp EEEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEECCE
T ss_pred CCCEEE-eCCCcEEEeCCCcEEEEEEEE--------------------------EecCCEEEEEECcccccceeeEEEee
Confidence 467776 667889999999999999999 99999999999999999888888888
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|....+..+.
T Consensus 65 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 102 (107)
T 3knb_B 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102 (107)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred cCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence 88888999999999999999999999999877665443
No 231
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.47 E-value=6.1e-13 Score=119.34 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=108.4
Q ss_pred cccCCceEEEEEEEEcc-CCCCCceecccccccce-----------------EEEEEecceeeEEEccCCCCCceEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNA-AGTEKPKISLDALIGKR-----------------IKEFVTSTTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~-~g~p~p~i~W~~~~~~~-----------------~~~~~~~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
.+..|+.+.|.|.+... .|.+.+.+.|.+..... ..+ .......|.|.+++.+|+|.|+|.
T Consensus 5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEE-ccCCCcEEEEecccchhCeEEEEE
Confidence 35678999999987321 13466788886522111 111 123457899999999999999999
Q ss_pred EEecCCCcc-----eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 299 AKNDYGIDM-----ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 299 a~n~~g~~~-----~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|..|... ..+.|.|...+..|.. .......|+.+
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~---------------------------------------~~~~~~~g~~~ 124 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSI---------------------------------------SDFEIPTSNIR 124 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCCCCCEE---------------------------------------EEEECSSTTEE
T ss_pred EEcCCCCccccccccEEEEEEcCCCCCCce---------------------------------------EeccCCCCCeE
Confidence 999876643 3566666654332210 00111347889
Q ss_pred EEEEEEe-eecCCceEEEECCeecCCCCceEEEEcC-Ce-EEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 374 TITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETSE-NQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 374 ~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~~-~~-~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+. |.|.|.|.|++++..+............ +. ....+..+.. .|.|.|+|.|.|..|..+..+.+
T Consensus 125 ~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 125 RIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM-TTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEET-TSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEe-cCCCEEEEEEecCcceeeeEEec
Confidence 9999994 9999999999999887643322222211 21 2223345566 89999999999999987765443
No 232
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.47 E-value=9.5e-13 Score=106.52 Aligned_cols=95 Identities=31% Similarity=0.447 Sum_probs=85.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++.. .|.|.|+|.|.|..|....
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~g~~~~ 91 (114)
T 2cqv_A 13 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ-EHCGCYTLLVENKLGSRQA 91 (114)
T ss_dssp CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCT-TTCEEEEEEEECSSCEEEC
T ss_pred CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCCh-hcCEEEEEEEEECCCcEEE
Confidence 456688999999999999999999999999999998877888888777778999999999 9999999999999999999
Q ss_pred EEEEEEecCCCCCCCC
Q psy7039 441 SCKVYVVDKPSPPQGP 456 (516)
Q Consensus 441 s~~l~v~~~p~~P~~~ 456 (516)
.+.|.|..+|.+|..+
T Consensus 92 ~~~l~V~~~p~~P~~p 107 (114)
T 2cqv_A 92 QVNLTVVDKPDPPAGT 107 (114)
T ss_dssp CEEEEEECSCSCCCCC
T ss_pred EEEEEEECCCCCCCCC
Confidence 9999999999888433
No 233
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.46 E-value=6.1e-13 Score=108.40 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=87.1
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIE 79 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~ 79 (516)
|+.+.+++..+.|++|.++++..++.++|.|+|.+|. +++++|.+|.|+|+..+. .|..+... ..++++|.+|++
T Consensus 6 S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p 82 (118)
T 1x3d_A 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMG--SQKQFKITKLSP 82 (118)
T ss_dssp CCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEE--SCSEEEEESCCT
T ss_pred CcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeecc--CCcEEEeCCCCC
Confidence 6778889999999999999999999999999999986 667889999999987543 78766444 568999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCCcce
Q psy7039 80 GETYQFQVRAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~~~~~ 105 (516)
++.|.|+|+|.|..|.+.++......
T Consensus 83 ~t~Y~frV~A~n~~G~s~~S~~~~~~ 108 (118)
T 1x3d_A 83 AMGCKFRLSARNDYGTSGFSEEVLYY 108 (118)
T ss_dssp TCEEEEECCEEESSCBCCCCCCEEEE
T ss_pred CCEEEEEEEEEECCCCCCCccCEEEE
Confidence 99999999999999998887655433
No 234
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.46 E-value=7.9e-13 Score=118.59 Aligned_cols=164 Identities=10% Similarity=-0.006 Sum_probs=106.4
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------CCceEEe
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------GGRADVQ 190 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------~~~~~~~ 190 (516)
.+.+..|+.+.|.|.+.. +. .+.|.+.+.|++++..+.. ..|..+.
T Consensus 3 ~v~v~~G~~v~L~C~~~~-------~~---------------~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~ 60 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNV-------SV---------------EELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60 (201)
T ss_dssp EEEEETTSCEEECCSCCC-------CT---------------THHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE
T ss_pred eEEEEeCCCEEEecccCC-------Cc---------------ccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc
Confidence 477899999999999860 00 0346789999998877621 1233322
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-----EEEEeece------eeeeccccCCceEEEEEEEEccCCCCCc
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-----ASAHVTGT------EFTDNNVHEGKAYEYRVSAVNAAGTEKP 259 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-----~~~~~~~~------~~~~~~l~~g~~~~~~~~~~~~~g~p~p 259 (516)
.....+|.|.+++.+|+|.|.|.+.+..|... ..+.+.+. .........|..+.+.|.+. .|.|.|
T Consensus 61 -~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~--~g~P~p 137 (201)
T 1dr9_A 61 -ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTS--GGFPEP 137 (201)
T ss_dssp -STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEE--EESSCE
T ss_pred -cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecC--CccCCC
Confidence 23456899999999999999999999765432 22222221 12223335688899999982 488999
Q ss_pred eecccccc----cceEEEEEecceeeE---EEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 260 KISLDALI----GKRIKEFVTSTTASL---NIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 260 ~i~W~~~~----~~~~~~~~~~~~~~l---~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
.+.|.+.. ............+.+ .+..+...|.|.|+|.|.|..|..+..+.
T Consensus 138 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN 196 (201)
T ss_dssp EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred EEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence 99997621 111122222221221 33456678999999999999988765544
No 235
>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.46 E-value=5.2e-13 Score=107.33 Aligned_cols=98 Identities=33% Similarity=0.522 Sum_probs=82.4
Q ss_pred cCCCCCCCCCcceEE-EeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 8 KNPFDEPGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
.+...+|++|.++.+ ..+++++|.|+|.+|..+++++|.+|.|+++..+. .|..+.. ...++++|.+|++++.|.|
T Consensus 3 st~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~f 80 (110)
T 2crz_A 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSF 80 (110)
T ss_dssp CSCCCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEE
T ss_pred CCcCCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEe--CCcEEEEECCcCCCCEEEE
Confidence 356788999999999 46788999999999877888899999999997655 7877653 4689999999999999999
Q ss_pred EEEEecCCCCCCCCCCCcceEe
Q psy7039 86 QVRAVNAAGPGEASKPTAPIVA 107 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~~~~~~ 107 (516)
+|+|.|..|.+.++......+.
T Consensus 81 rV~A~n~~G~g~~S~~~~~~T~ 102 (110)
T 2crz_A 81 RLRAANKMGFGPFSEKCDITTA 102 (110)
T ss_dssp CCEEECSSCBCCCCCCEEEECC
T ss_pred EEEEEcCCccCCCCCccccccC
Confidence 9999999999888765544443
No 236
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.46 E-value=2.9e-12 Score=119.78 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=112.9
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------ 182 (516)
..+..+.+.+|+++.|.|.+. +.| .+.+.|+++ +..+.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 58 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKAS--------------------------GYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGT 58 (256)
T ss_dssp EECCCEEECTTCCEEEEEEEC--------------------------SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCE
T ss_pred ECCCCeeecCCCcEEEEEEec--------------------------cccCCCceEEEEEECCCCCcEEEEEEecCCCce
Confidence 344567899999999999998 654 567888873 22110
Q ss_pred -----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCc----e---EEEEEeec-ee----eeeccccCCce
Q psy7039 183 -----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGT----A---TASAHVTG-TE----FTDNNVHEGKA 243 (516)
Q Consensus 183 -----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~---~~~~~~~~-~~----~~~~~l~~g~~ 243 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..|. . ...+.+.. .. .....+.+|..
T Consensus 59 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~ 138 (256)
T 1nqb_A 59 KYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQ 138 (256)
T ss_dssp EECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCC
T ss_pred eeCcccCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCc
Confidence 1356665542 45679999999999999999999987552 1 11222211 11 12235788999
Q ss_pred EEEEEEEEccCCCCCc-----eeccccc-ccc------------------eEEEEEecceeeEEEccCCCCCceEEEEEE
Q psy7039 244 YEYRVSAVNAAGTEKP-----KISLDAL-IGK------------------RIKEFVTSTTASLNIKNSVRKDSGIYKIEA 299 (516)
Q Consensus 244 ~~~~~~~~~~~g~p~p-----~i~W~~~-~~~------------------~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a 299 (516)
+.|.|.+ .|.+.+ .+.|.+. .+. ++..........|.|.+++.+|+|.|+|.|
T Consensus 139 v~L~C~~---~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 215 (256)
T 1nqb_A 139 ASISCRS---SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQ 215 (256)
T ss_dssp EEEEEEE---SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EEEEeEe---cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEE
Confidence 9999998 677665 8999762 111 222223345678999999999999999999
Q ss_pred EecCCCc-ceeEEEEEec
Q psy7039 300 KNDYGID-MADIEVVVVS 316 (516)
Q Consensus 300 ~n~~g~~-~~~~~l~v~~ 316 (516)
.|..... .....|.|..
T Consensus 216 ~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 216 GSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CSSSSCEECCCEEEEECC
T ss_pred ccCCceEECCCEEEEEEC
Confidence 9854321 2234566643
No 237
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.46 E-value=1.8e-12 Score=117.16 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=111.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccc-------------------ccceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-------------------IGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-------------------~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ . +.+.+.|.+. ...++..........|.|.+++.+|+|.|+
T Consensus 10 ~~v~~G~~v~L~C~~---~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (211)
T 3tv3_L 10 ASGSPGQSITISCTG---T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYY 84 (211)
T ss_dssp EEECTTCEEEEEEEC---C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred EEEcCCCCEEEEEEE---C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEE
Confidence 456789999999987 3 7888999652 112344444556778999999999999999
Q ss_pred EEEEecCC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEE
Q psy7039 297 IEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374 (516)
Q Consensus 297 c~a~n~~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~ 374 (516)
|.|.|..+ .......|.|...+..+.. +.+ .+....+..|+.+.
T Consensus 85 C~~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~---------------------------------~~~~~~~~~g~~v~ 130 (211)
T 3tv3_L 85 CGSLVGNWDVIFGGGTKLTVLGQPKAAPS-VTL---------------------------------FPPSSEELQANKAT 130 (211)
T ss_dssp EEEEETTTEEEECCCEEEEECCSCCBCCE-EEE---------------------------------ECCCHHHHHTTCEE
T ss_pred EEEecCCCceeECCCceEEEeCCCCcCCe-eEe---------------------------------cCCchhhhcCCCeE
Confidence 99999887 3445567777643211110 000 00111122689999
Q ss_pred EEEEEeeecC--CceEEEECCeecCCCCce--EEEEcCC----eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 375 ITVPFSGRPK--PTPIWTVNGDEVSPDGRI--KFETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 375 l~C~~~g~p~--~~i~W~~~~~~l~~~~~~--~~~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
|.|.+.|.++ +.+.|+++|..+..+... ......+ ...|.|..+.. +|.|.|+|.|.|..+....+
T Consensus 131 l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 131 LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp EEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHH-HHSSCEEEEEEETTEEEEEE
T ss_pred EEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEECCCCEEee
Confidence 9999998644 689999999877532100 0011111 14689999988 89999999999998654443
No 238
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.46 E-value=1.5e-12 Score=121.14 Aligned_cols=175 Identities=15% Similarity=0.094 Sum_probs=110.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 14 ~~v~~G~~v~L~C~~---~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (250)
T 3esu_F 14 LSASLGDRVTISCRA---SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF 90 (250)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEeeCCCcEEEEEEe---cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence 346789999999998 78888999996521 12333333445668999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....|.|...+..... ......... +.........+....+.+|+.+.|
T Consensus 91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~~------------------~~~~~~~~~~~~~~~v~~G~~v~L 151 (250)
T 3esu_F 91 CQQGNTLPWTFGGGTKLEIRRGGGGSGG-GGSGGGGSG------------------GGGSEVQLQQSGPELVKPGASVKI 151 (250)
T ss_dssp EEECSSSSCEECCCEEEEEC-------------------------------------------CEECCCEEECTTCCEEE
T ss_pred EEEeeCCCceECCCEEEEEECCCCcccc-ccccccccc------------------CcccceEEecCCceEEcCCceEEE
Confidence 9999876542 23345666543211000 000000000 000000001224466889999999
Q ss_pred EEEEeeec--CCceEEEEC--CeecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEEEEEE
Q psy7039 376 TVPFSGRP--KPTPIWTVN--GDEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~--~~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
.|.+.+.+ .+.+.|+++ +..+. ...++.+... ....+|.|.++.. .|+|.|.|.|.
T Consensus 152 ~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~ 230 (250)
T 3esu_F 152 SCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS-VDSAVYFCARS 230 (250)
T ss_dssp EEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG-GGCEEEEEEEE
T ss_pred EEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc-ccCEEEEEEEe
Confidence 99998876 679999987 33221 1245555432 4556899999999 99999999999
Q ss_pred c
Q psy7039 433 N 433 (516)
Q Consensus 433 n 433 (516)
|
T Consensus 231 ~ 231 (250)
T 3esu_F 231 G 231 (250)
T ss_dssp C
T ss_pred c
Confidence 7
No 239
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.46 E-value=1.1e-12 Score=120.20 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=53.6
Q ss_pred EEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 367 VLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|.|..+.....
T Consensus 133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~~~~~~ 210 (227)
T 1mju_H 133 DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPASSTKVD 210 (227)
T ss_dssp -----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TT-SCCEEEEEEGGGTEEEE
T ss_pred ccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhc-CC-CeEEEEEEECCCCcceE
Confidence 4578899999999986 666 99999998754211000000111 124789988887 78 99999999988777776
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
..+.+..+|..|
T Consensus 211 ~~~~~~~~p~~~ 222 (227)
T 1mju_H 211 KKIEPRGPTIKP 222 (227)
T ss_dssp EECCCCCC----
T ss_pred EEeCCCCCCCCC
Confidence 777666666554
No 240
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=99.46 E-value=5.4e-12 Score=114.15 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCC---CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISD---GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~---~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.+|++|.++++..++++++.|+|.+|..+ .++.+.+|.|+|+..+. .+.. .......+++.|.+|++++.|.|+|
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V 81 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY-KNANATTLSYLVTGLKPNTLYEFSV 81 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCC-EEEEESSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceE-EEeCCCceEEEecCcCCCCEEEEEE
Confidence 45679999999999999999999997422 24678999999998655 2222 2234578899999999999999999
Q ss_pred EEecCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKP 101 (516)
Q Consensus 88 ~a~n~~g~~~~s~~ 101 (516)
+|.|..|.+.++..
T Consensus 82 ~A~n~~g~~~~S~~ 95 (211)
T 3p4l_A 82 MVTKGRRSSTWSMT 95 (211)
T ss_dssp EEEETTEECCCCCC
T ss_pred EEEcCCCCCcccee
Confidence 99999887776543
No 241
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.46 E-value=4e-14 Score=125.64 Aligned_cols=167 Identities=11% Similarity=0.103 Sum_probs=104.3
Q ss_pred cCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEcc-CCCCCceEEEEEEEecCCCcceeEEEEEecC
Q psy7039 239 HEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~-l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~ 317 (516)
..|+.+.|.|.+ .| + +.+.|.+... .+ .......|.|.+ +..+|+|.|+|.|.|..|.......+.|...
T Consensus 12 ~~G~~v~L~C~~---~~-~-~~i~W~k~g~-~l---~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~ 82 (186)
T 1jbj_A 12 ISGTSVELTCPL---DS-D-ENLKWEKNGQ-EL---PQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSA 82 (186)
T ss_dssp EETTEEEEECSS---CC-C-TTCEEEETTE-EE---CSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSC
T ss_pred eCCcEEEEEEeC---CC-C-CceEEEECCE-EC---CCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecc
Confidence 569999999987 55 3 3489976321 11 011456899999 9999999999999999888655555554433
Q ss_pred CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC
Q psy7039 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397 (516)
Q Consensus 318 p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~ 397 (516)
..+...+....... .. .+|. +..+ ............+..|+.+.|.|.+ |.|.|.|++++..+.
T Consensus 83 ~~~~~~~~~~~~~~-----~~-~~~~------~~~~-~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~ 146 (186)
T 1jbj_A 83 DDAKKDAAKKDDAK-----KD-DAKK------DGSQ-TNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS 146 (186)
T ss_dssp CCCCCCCCCCCCCS-----CC-SSST------TCCS-CCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred cccccccccccccc-----cC-Cccc------cccc-cccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECc
Confidence 32221100000000 00 0000 0000 0000000111123499999999998 788999999998875
Q ss_pred CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 398 ~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.... ....|.|.++.. .|+|.|+|.|.|..|..
T Consensus 147 ~~~~-------~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 147 PLNA-------TKNTWNLGNNAK-DPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSC-------CSSCCEEEETTS-CCEEEEEEEESSCEEEE
T ss_pred ccCC-------CcceEEECCCCc-CcCEEEEEEEEcCcCCc
Confidence 3322 334689999999 99999999999998865
No 242
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.46 E-value=1.7e-12 Score=123.20 Aligned_cols=184 Identities=18% Similarity=0.107 Sum_probs=117.9
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l 287 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.++
T Consensus 36 ~~v~~G~~v~L~C~~---~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 112 (282)
T 1qok_A 36 ELVRSGTSVKLSCTA---SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL 112 (282)
T ss_dssp EEEETTCCEEEEEEE---ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred EEEeCCCeEEEEEec---cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence 356789999999997 5553 5789996521 1 1222222 123578999999
Q ss_pred CCCCceEEEEEEEecCCC-----cceeEEEEEecCCCCCC-CCceeeeccCCeeEEEecCCCCCCCCceeeccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI-----DMADIEVVVVSKPGPPT-GPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLS 361 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~-----~~~~~~l~v~~~p~~p~-~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~ 361 (516)
+.+|+|.|+|.+.|..|. ......|.|...+.... .++.. .+.++ .+ ...
T Consensus 113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~----------~~~~~------~~--------~~~ 168 (282)
T 1qok_A 113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGG----------GGSEN------VL--------TQS 168 (282)
T ss_dssp CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-------------------------CC------CE--------EEE
T ss_pred ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCC----------Cccce------EE--------ecC
Confidence 999999999999998762 11234677765542100 00000 00000 00 012
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEE--CCeecC------------CCCceEEEEcCCeEEEEEcCceecCCceEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVS------------PDGRIKFETSENQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~--~~~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y 427 (516)
+....+.+|+.+.|.|.+.+.+ +.+.|++ ++..+. ...++..........|+|.++.. .|+|.|
T Consensus 169 p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~-~DsG~Y 246 (282)
T 1qok_A 169 PAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA-EDAATY 246 (282)
T ss_dssp CSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG-GGCEEE
T ss_pred CCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh-hHCEEE
Confidence 3456788999999999999998 8999999 454331 23566666556677899999999 999999
Q ss_pred EEEEEcCCCc-eeEEEEEEEec
Q psy7039 428 TIQLVNTVGS-DSASCKVYVVD 448 (516)
Q Consensus 428 ~c~a~n~~G~-~s~s~~l~v~~ 448 (516)
+|.|.|..+. -.....|.|..
T Consensus 247 ~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 247 YCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp EEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEeeCCCceEeCCEEEEEec
Confidence 9999986433 23345677764
No 243
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.45 E-value=1.6e-13 Score=110.42 Aligned_cols=95 Identities=35% Similarity=0.531 Sum_probs=80.3
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.+|..+++..+++++|.|+|.+|..++|.+|.+|.|+++..+. .|..+.......+++++.+|+++..|.|+|+|.
T Consensus 9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~ 88 (112)
T 1bpv_A 9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK 88 (112)
T ss_dssp CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEE
Confidence 4678888888899999999999998887888999999999998655 898776555568899999999999999999999
Q ss_pred cCCCC-CCCCCCCcceE
Q psy7039 91 NAAGP-GEASKPTAPIV 106 (516)
Q Consensus 91 n~~g~-~~~s~~~~~~~ 106 (516)
|..|. +.++.....++
T Consensus 89 N~~G~~s~~S~~~~~~t 105 (112)
T 1bpv_A 89 NAAGAISPPSEPSDAIT 105 (112)
T ss_dssp CTTSCEEEEEEEEEEEC
T ss_pred ECCCCCCCCCCCCCCEE
Confidence 99996 87765444333
No 244
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.45 E-value=1e-12 Score=121.67 Aligned_cols=170 Identities=12% Similarity=0.032 Sum_probs=115.2
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccceEEEE-----EecceeeEEEccCCCCCceEEEEEEEecCCC--ccee
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEF-----VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI--DMAD 309 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~--~~~~ 309 (516)
.+.+|+.+.|.|.+ .+ +.+.+.|.+... ..... .......|.|.+++.+|+|.|+|.+.|..+. .+..
T Consensus 17 ~v~~G~~VtL~C~~---~~-~~~~~~w~k~g~-~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~ 91 (242)
T 1p6f_A 17 MVPKEKQVTICCQG---NY-GAVEYQLHFEGS-LFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNL 91 (242)
T ss_dssp EEETTCCEEEEEEC---CT-TCCEEEEEETTE-EEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCC
T ss_pred ccCCCCcEEEEEee---CC-CCcEEEEEECCC-ccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcc
Confidence 46789999999997 33 356777865321 11111 1235678999999999999999999886443 3455
Q ss_pred EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEE
Q psy7039 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389 (516)
Q Consensus 310 ~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 389 (516)
+.|.|......|. +. ......+.+|+.++|.|.+.+. .+.+.|
T Consensus 92 ~~L~V~~~~~~P~--i~----------------------------------~~p~~~v~~G~~vtL~C~~~~~-~~~~~w 134 (242)
T 1p6f_A 92 LDLVVTEMYDTPT--LS----------------------------------VHPGPEVISGEKVTFYCRLDTA-TSMFLL 134 (242)
T ss_dssp EEEEEECCSCCCE--EE----------------------------------EESCSEEETTCEEEEEEECTTS-CSEEEE
T ss_pred eEEEeecccCCCc--eE----------------------------------ccCCCccCCCCcEEEEEecCCC-CCEEEE
Confidence 6777765332221 00 0112357899999999998764 458999
Q ss_pred EECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCC---CceeEEEEEEEecCCCCC
Q psy7039 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV---GSDSASCKVYVVDKPSPP 453 (516)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~---G~~s~s~~l~v~~~p~~P 453 (516)
+++|..+.. ..........|.|.++.. .|+|.|+|.|.|.. ...+....|.|...+..|
T Consensus 135 ~k~g~~~~~----~~~~~~~~~~l~I~~v~~-~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 135 LKEGRSSHV----QRGYGKVQAEFPLGPVTT-AHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp EECSSSCEE----EEEECSSEEEEEEEECCG-GGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred EECCCccCc----cccCCCceEEEEeCCCcc-ccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 999875532 122345567899999999 99999999999874 235667889998766665
No 245
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.45 E-value=2.3e-12 Score=120.53 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=110.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC--cCceeeEEeeCC--ee--e-----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS--EPFLNHGWSING--QV--C----------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~i~W~~~~--~~--~----------- 181 (516)
..+..+.+.+|+++.|.|.+. + .+.+.+.|++.. .. +
T Consensus 13 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 66 (257)
T 3gkz_A 13 QESGPSLVKPSQTLSLTCSVT--------------------------GDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTY 66 (257)
T ss_dssp EEECCSEECTTCCEEEEEEEE--------------------------ESCCSSCEEEEEEECTTSCEEEEEEEETTCCEE
T ss_pred ECCCCeEEcCCCcEEEEEEEE--------------------------cccccceEEEEEEECCCCCcEEEEEEecCCcEE
Confidence 455667799999999999998 4 235667777621 11 1
Q ss_pred ---ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeece---------------ee--
Q psy7039 182 ---QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTGT---------------EF-- 233 (516)
Q Consensus 182 ---~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~~---------------~~-- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+... .+
T Consensus 67 ~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
T 3gkz_A 67 YNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQ 146 (257)
T ss_dssp ECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEEC
T ss_pred ecccccccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEc
Confidence 11245555532 345689999999999999999999862111 111222211 11
Q ss_pred --eeccccCCceEEEEEEEEccCCCCCc-eecccccc-c------------------ceEEEEEecceeeEEEccCCCCC
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTEKP-KISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p~p-~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
....+.+|+.+.|.|.+ .+.+.+ .+.|.+.. + .++..........|.|.+++.+|
T Consensus 147 ~p~~~~v~~G~~v~L~C~~---~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 223 (257)
T 3gkz_A 147 SPAIMSASPGEKVTLTCSA---SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAED 223 (257)
T ss_dssp SCSEEEECTTCCEEEEEEE---SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCceEEEeCCCcEEEEEEE---ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHH
Confidence 12456789999999998 666766 89996521 1 22233334456679999999999
Q ss_pred ceEEEEEEEecCCCc-ceeEEEEEecCCCCC
Q psy7039 292 SGIYKIEAKNDYGID-MADIEVVVVSKPGPP 321 (516)
Q Consensus 292 ~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p 321 (516)
+|.|+|.|.+..... -.-..|.|...+..|
T Consensus 224 ~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~~~ 254 (257)
T 3gkz_A 224 AASYFCHQWSSFPFTFGSGTKLEIKRAPHHH 254 (257)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCC----
T ss_pred CEEEEEEEccCCceEEcCCEEEEEEeCCCCC
Confidence 999999998754322 112456665554443
No 246
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.45 E-value=7.8e-13 Score=119.81 Aligned_cols=167 Identities=15% Similarity=0.134 Sum_probs=107.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-------CceeeEEeeCCeee----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-------PFLNHGWSINGQVC---------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~i~W~~~~~~~---------- 181 (516)
..+..+.+.+|+.+.|.|.+. +. +.+.+.|++++...
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~ 58 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFS--------------------------YPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNN 58 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEE--------------------------CCCCCCSCCCCEEEEEEETTCCGGGCCBSEESC
T ss_pred eCCcEEEEecCccEEEeeeee--------------------------cCCcccCCCCceEEEEEecCCCCcccceEecCC
Confidence 345668899999999999988 33 56789999875421
Q ss_pred -------ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeece----ee-eeccccCC
Q psy7039 182 -------QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTGT----EF-TDNNVHEG 241 (516)
Q Consensus 182 -------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~~----~~-~~~~l~~g 241 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+... .+ ....+.+|
T Consensus 59 ~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G 138 (214)
T 2zg1_A 59 PDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138 (214)
T ss_dssp TTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTT
T ss_pred cccccCccccCceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCC
Confidence 01245554322 235689999999999999999999875322 112222211 11 12246789
Q ss_pred ceEEEEEEEEcc-CCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 242 KAYEYRVSAVNA-AGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 242 ~~~~~~~~~~~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
+.+.+.|.+... .|.|.|.+.|.+....... ........|.|..+..+|.|.|+|.|.|..+.......+
T Consensus 139 ~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~-~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v 209 (214)
T 2zg1_A 139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD-PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209 (214)
T ss_dssp CCEEEEEECTTCCSCSSCCEEEEESSTTSSSC-SSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred CeEEEEEEeccCCCCCCCceEEEeCCCCccCC-CCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence 999999998211 1248899999763221100 001356789999999999999999999986554433333
No 247
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.45 E-value=4.5e-13 Score=116.66 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=108.6
Q ss_pred cccCCceEEEEEEEEccCCCC-CceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE-KPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
.+.+|+.+.+.|.+ .+.+ .+.+.|.+... ........+.+.++..+|+|.|+|.+.|..+. ..+.|.|.
T Consensus 15 ~v~~G~~v~l~C~~---~~~p~~~~~~W~~~g~-----~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~ 84 (170)
T 3ry4_A 15 NVLQEDSVTLTCQG---ARSPESDSIQWFHNGN-----LIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVL 84 (170)
T ss_dssp EEETTCEEEEEEES---CCCSSSSCEEEEETTE-----ECTTCCSSEEEEECCGGGCEEEEEEETTSBCC--CCEEEEEE
T ss_pred EEECCCcEEEEEEe---cCCCCcceEEEEECCe-----EcccCccceEEEecccccCeEEEEEEeCCCce--EeEEEEEE
Confidence 46789999999998 6655 67899965211 11223456778899999999999999875433 34566665
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEe-eecCCceEEEECCe
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGD 394 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~~~i~W~~~~~ 394 (516)
..+... ......+..|+.+.|.|.+. +.|.+.+.|++++.
T Consensus 85 ~~~~~~---------------------------------------~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~ 125 (170)
T 3ry4_A 85 FEWLVL---------------------------------------QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125 (170)
T ss_dssp CCSEEE---------------------------------------ECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTE
T ss_pred CCceEe---------------------------------------cCCCceeecCCeEEEEEECCCCCCCceEEEEECCe
Confidence 532110 11223567899999999995 45668999999987
Q ss_pred ecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc-eeEEEEEEE
Q psy7039 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446 (516)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~-~s~s~~l~v 446 (516)
.+.. ......|.|.++.. .|.|.|+|.|.|..|. .+..+.|.|
T Consensus 126 ~~~~--------~~~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 126 SQKF--------SHLDPTFSIPQANH-SHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEE--------ESSCCEEEESSCCG-GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred Eccc--------cCCCCeEEEEeccc-cCCEEEEEEEEeCcCccccccEEEEE
Confidence 6431 12334699999999 9999999999999987 455566665
No 248
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.45 E-value=1.1e-12 Score=115.71 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=105.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--CCeee----------ccCCceE
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQVC----------QIGGRAD 188 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~~----------~~~~~~~ 188 (516)
...+....|+++.|.|... ..+.+.+.|.|++ ++..+ ....|+.
T Consensus 6 ~~~v~g~~G~sv~L~~~~~------------------------~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~ 61 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSF------------------------QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61 (182)
T ss_dssp CEEEEEETTSCEEECCTTC------------------------CCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE
T ss_pred ccEEEEecCCCEEEeCCcc------------------------cccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE
Confidence 4557788999999999553 0035678999999 88766 2345666
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE--EEEeeceeee-eccc-cCCceEEEEEEEEccCCCCCceeccc
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA--SAHVTGTEFT-DNNV-HEGKAYEYRVSAVNAAGTEKPKISLD 264 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~--~~~~~~~~~~-~~~l-~~g~~~~~~~~~~~~~g~p~p~i~W~ 264 (516)
+.. +.+|.|.+++.+|+|.|+|.+.|..|.... ...+.+.... ...+ ..+..+.|.|.+ .+.|.|.+.|.
T Consensus 62 ~~~---ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~---~~~p~~~~~W~ 135 (182)
T 1hnf_A 62 LFK---NGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEV---MNGTDPELNLY 135 (182)
T ss_dssp ECT---TSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEEC---SSCSSCEEEEE
T ss_pred ECC---CCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEc---cCCCCCEEEEE
Confidence 542 348999999999999999999998877543 2222222110 0001 123357888887 77789999997
Q ss_pred ccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 265 ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
+... .. ......+.+.. ...|.|.|+|.|.|..+.......+.+
T Consensus 136 ~~g~-~l----~~~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 136 QDGK-HL----KLSQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp ESSC-EE----EEESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred ECCE-EC----CCCCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 6322 22 11233344433 478999999999999998776665544
No 249
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.45 E-value=1.4e-12 Score=102.75 Aligned_cols=87 Identities=28% Similarity=0.562 Sum_probs=77.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCC--CceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD--GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~--~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+...++...|.|.++.. .|+|.|+|.|.|..|..
T Consensus 11 ~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~ 89 (100)
T 3knb_A 11 LPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTLSLGNEFGSD 89 (100)
T ss_dssp CCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCG-GGCEEEEEEEEETTEEE
T ss_pred CCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCc-cCCEEEEEEEEECCCEE
Confidence 456788999999999999999999999999999988643 467777778888999999999 99999999999999999
Q ss_pred eEEEEEEEec
Q psy7039 439 SASCKVYVVD 448 (516)
Q Consensus 439 s~s~~l~v~~ 448 (516)
+.++.|.|+.
T Consensus 90 ~~~~~l~V~~ 99 (100)
T 3knb_A 90 SATVNIHIRS 99 (100)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEEEEEE
Confidence 9999998864
No 250
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.44 E-value=1.8e-12 Score=120.00 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=114.8
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+.. .+.+|+.++|.|.+. + +...+.|++++..+..... ....
T Consensus 6 ~kP~i~-~~P~~-~v~~G~~VtL~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~~-~~~~ 55 (242)
T 1p6f_A 6 PKPFIW-AEPHF-MVPKEKQVTICCQGN--------------------------Y-GAVEYQLHFEGSLFAVDRP-KPPE 55 (242)
T ss_dssp CCCEEE-EESCS-EEETTCCEEEEEECC--------------------------T-TCCEEEEEETTEEEEEECC-SSCT
T ss_pred CCCEEE-eeCCC-ccCCCCcEEEEEeeC--------------------------C-CCcEEEEEECCCccccccc-cccC
Confidence 356665 33333 789999999999987 4 3468999999876642100 0011
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCce----EEEEEeec----eee---eeccccCCceEEEEEEEEccCCCCCce
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTA----TASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~----~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~p~p~ 260 (516)
......|.|.+++.+|+|.|+|.+.+..+.. ...+.+.. ..+ ....+.+|+.+.|.|.+ .+ +.+.
T Consensus 56 ~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~---~~-~~~~ 131 (242)
T 1p6f_A 56 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL---DT-ATSM 131 (242)
T ss_dssp TCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEEC---TT-SCSE
T ss_pred CcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEec---CC-CCCE
Confidence 3346789999999999999999998753321 22222221 111 12346789999999987 44 3468
Q ss_pred ecccccccc-eEEEEEecceeeEEEccCCCCCceEEEEEEEecC---CCcceeEEEEEecCCCCC
Q psy7039 261 ISLDALIGK-RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY---GIDMADIEVVVVSKPGPP 321 (516)
Q Consensus 261 i~W~~~~~~-~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~---g~~~~~~~l~v~~~p~~p 321 (516)
+.|.+.... ............|.|.+++.+|+|.|+|.+.|.. ...+..+.|.|...+..|
T Consensus 132 ~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P 196 (242)
T 1p6f_A 132 FLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENT 196 (242)
T ss_dssp EEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-----
T ss_pred EEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCC
Confidence 888653221 1122234567899999999999999999999864 234556788887755444
No 251
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.44 E-value=3.1e-12 Score=118.99 Aligned_cols=154 Identities=13% Similarity=0.143 Sum_probs=108.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~------------~~~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++.. .. ....
T Consensus 9 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~ 62 (250)
T 3esu_F 9 QSTSSLSASLGDRVTISCRAS--------------------------QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVP 62 (250)
T ss_dssp CSCSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCEEEEEETTTEECTTCC
T ss_pred ecCCEEEeeCCCcEEEEEEec--------------------------ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCC
Confidence 455678899999999999999 8888899998842 11 0113
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec------------------------eeeeecc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG------------------------TEFTDNN 237 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~------------------------~~~~~~~ 237 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.|..+... ..+.+.. .......
T Consensus 63 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
T 3esu_F 63 SRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL 142 (250)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEE
T ss_pred CCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceE
Confidence 566666666677999999999999999999988654321 1122211 0112234
Q ss_pred ccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccCCC
Q psy7039 238 VHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNSVR 289 (516)
Q Consensus 238 l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l~~ 289 (516)
+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.+++.
T Consensus 143 v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 219 (250)
T 3esu_F 143 VKPGASVKISCKD---SGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS 219 (250)
T ss_dssp ECTTCCEEEEEEC---CSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EcCCceEEEEEEe---cCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc
Confidence 6789999999998 6655 7889996531 1 1112211 13445799999999
Q ss_pred CCceEEEEEEEe
Q psy7039 290 KDSGIYKIEAKN 301 (516)
Q Consensus 290 ~d~g~y~c~a~n 301 (516)
+|+|.|+|.|.+
T Consensus 220 ~DsG~Y~C~~~~ 231 (250)
T 3esu_F 220 VDSAVYFCARSG 231 (250)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccCEEEEEEEec
Confidence 999999999997
No 252
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.44 E-value=2.6e-13 Score=131.62 Aligned_cols=203 Identities=9% Similarity=-0.028 Sum_probs=123.2
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccc
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLR 150 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~ 150 (516)
.|.|...+..|.+.|+|+|.|..+..... ...........|.+....+....+.+|+.+.|.|.+.
T Consensus 73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~---~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~----------- 138 (323)
T 2wqr_A 73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDS---TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVV----------- 138 (323)
T ss_dssp EEEEEHHHHHTTCCEEEEEEETTEEEEEE---ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEE-----------
T ss_pred EEEEcHHHcCCCCcEEEEEEeCCCCccee---eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEe-----------
Confidence 46777766778999999999876532110 0000011112333332444455678899999999998
Q ss_pred cccccccCccceeecCc-Cce---eeEEeeCC-eeeccCCceEE-eecC---CeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 151 ALGVRANSTKGWVKLSE-PFL---NHGWSING-QVCQIGGRADV-QTTK---SETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-p~~---~i~W~~~~-~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+. |.+ .|.|++++ ..+........ ...+ ..+.|.|.+++.+|+|.|+|.+.|..+.
T Consensus 139 ---------------g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~ 203 (323)
T 2wqr_A 139 ---------------DLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP 203 (323)
T ss_dssp ---------------EECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred ---------------ccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC
Confidence 64 445 89999964 43332221111 1111 2457999999999999999999997644
Q ss_pred eEEEEEee-------ceeee----eccccCCceEEEEEEEEccCC-CCC-ceecccccc----cceEEE---EEe-----
Q psy7039 222 ATASAHVT-------GTEFT----DNNVHEGKAYEYRVSAVNAAG-TEK-PKISLDALI----GKRIKE---FVT----- 276 (516)
Q Consensus 222 ~~~~~~~~-------~~~~~----~~~l~~g~~~~~~~~~~~~~g-~p~-p~i~W~~~~----~~~~~~---~~~----- 276 (516)
......+. ...+. ......|....|.|.+ .| .|+ +.+.|.+.. ...... ...
T Consensus 204 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~ 280 (323)
T 2wqr_A 204 RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLI---QNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGF 280 (323)
T ss_dssp SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEE---EEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSE
T ss_pred CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEe---eeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcE
Confidence 32222221 11111 1112239999999998 55 343 379996521 111111 000
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.....|.|..+..+|.|.|+|.|.|..+.
T Consensus 281 ~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 281 FVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 11346889999999999999999998766
No 253
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.44 E-value=4.4e-12 Score=117.14 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred ccccCCceEEEEEEEEccCCCC----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCCc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+........|.|.+++.+|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (240)
T 1moe_A 11 LAVSLGQRATMSCRA---GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (240)
T ss_dssp EEECTTSCEEEEEEE---SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEecCCCCEEEEEeC---CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence 456789999999998 7776 7889996521 1123333334556899999999999
Q ss_pred eEEEEEEEecCCC-cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCC
Q psy7039 293 GIYKIEAKNDYGI-DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGE 371 (516)
Q Consensus 293 g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~ 371 (516)
|.|+|.|.|..+. ......|.|...+.....++.+ ..+....+..|+
T Consensus 88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~--------------------------------~~~~~~~v~~G~ 135 (240)
T 1moe_A 88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQL--------------------------------QQSGAELVEPGA 135 (240)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEE--------------------------------EECCCEEECTTC
T ss_pred EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEE--------------------------------eCCCceEEeCCC
Confidence 9999999998654 3345667776544211111111 112345688999
Q ss_pred eEEEEEEEeeecC--CceEEEECC--eecC-----------------CCCceEEEEc--CCeEEEEEcCceecCCceEEE
Q psy7039 372 EFTITVPFSGRPK--PTPIWTVNG--DEVS-----------------PDGRIKFETS--ENQTIYRNKSAKRATDSGSYT 428 (516)
Q Consensus 372 ~~~l~C~~~g~p~--~~i~W~~~~--~~l~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~~~~g~y~ 428 (516)
.+.|.|.+.+.|. +.+.|+++. ..+. ...++.+... .....|.|.++.. .|+|.|+
T Consensus 136 ~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~ 214 (240)
T 1moe_A 136 SVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS-EDTAVYY 214 (240)
T ss_dssp CEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGCEEEE
T ss_pred cEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH-HHCEEEE
Confidence 9999999998874 589999962 2110 1235555432 4557899999999 9999999
Q ss_pred EEEEcC
Q psy7039 429 IQLVNT 434 (516)
Q Consensus 429 c~a~n~ 434 (516)
|.|.+.
T Consensus 215 C~a~~~ 220 (240)
T 1moe_A 215 CAPFGY 220 (240)
T ss_dssp EEECST
T ss_pred EEEEec
Confidence 999853
No 254
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.44 E-value=2.6e-12 Score=119.06 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=107.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee---ec---------cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV---CQ---------IG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~---~~---------~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.|.+.+.|+++. .. +. ..
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (242)
T 2znx_A 6 QSPATLSVTPGNSVSLSCRAS--------------------------QSIGNNLHXYQQKSHESPRLLIKYASQSISGIP 59 (242)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTSC
T ss_pred EcCCeEEEcCCCcEEEEEEeC--------------------------CCCCceEEEEEeCCCCCceEEEEeccccCCCCC
Confidence 445668899999999999999 7778889998842 11 10 13
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece---------------ee---eeccccCCce
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT---------------EF---TDNNVHEGKA 243 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~---------------~~---~~~~l~~g~~ 243 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... .+ ....+.+|+.
T Consensus 60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~ 139 (242)
T 2znx_A 60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQT 139 (242)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSC
T ss_pred CCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCe
Confidence 56666555667799999999999999999999874421 112222110 11 1234788999
Q ss_pred EEEEEEEEccCCCC--Cceecccccc-c----------------------ceEEEEE--ecceeeEEEccCCCCCceEEE
Q psy7039 244 YEYRVSAVNAAGTE--KPKISLDALI-G----------------------KRIKEFV--TSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 244 ~~~~~~~~~~~g~p--~p~i~W~~~~-~----------------------~~~~~~~--~~~~~~l~i~~l~~~d~g~y~ 296 (516)
+.|.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.+++.+|+|.|+
T Consensus 140 v~L~C~~---~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 216 (242)
T 2znx_A 140 LSLTCSV---TGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY 216 (242)
T ss_dssp EEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEEEEEE---EccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEE
Confidence 9999998 5554 5789996521 1 1122211 123468999999999999999
Q ss_pred EEEEec
Q psy7039 297 IEAKND 302 (516)
Q Consensus 297 c~a~n~ 302 (516)
|.|.|.
T Consensus 217 C~a~~~ 222 (242)
T 2znx_A 217 CANXDG 222 (242)
T ss_dssp EEETTS
T ss_pred EeccCC
Confidence 999874
No 255
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.43 E-value=1.4e-12 Score=120.04 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=112.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.+.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 34 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 110 (237)
T 3sob_L 34 LSASVGDRVTITCRA---SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 110 (237)
T ss_dssp EEEETTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEeCCCcEEEEEec---CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence 456789999999998 67788899995511 22344444556788999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....+.|...+.+|. +.+. .....+..|+.+.|
T Consensus 111 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~v~l 155 (237)
T 3sob_L 111 CQQSYTTPPTFGQGTKVEIKRTVAAPS--VFIF---------------------------------PPSDEQLKSGTASV 155 (237)
T ss_dssp EEECSSSSCEECCCEEEEEECCCBCCE--EEEE---------------------------------CCCHHHHHHTEEEE
T ss_pred EeeccCCceEEcCcEEEEEecCCCCCc--eEEe---------------------------------CCChhhccCCceEE
Confidence 9998876532 2344666655332221 0000 01111235788999
Q ss_pred EEEEeeecC--CceEEEECCeecCCCC--ceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 376 TVPFSGRPK--PTPIWTVNGDEVSPDG--RIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 376 ~C~~~g~p~--~~i~W~~~~~~l~~~~--~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
.|.+.+.++ +.+.|++++..+..+. ........+ ...|.|..... +|.|.|+|.|.|..........
T Consensus 156 ~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~~~~~~ 231 (237)
T 3sob_L 156 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGLSSPVTKS 231 (237)
T ss_dssp EEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTCSSCEEEE
T ss_pred EEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHc-cCCCcEEEEEeeCCCCCceeee
Confidence 999998544 7999999998775421 000000111 24688999988 9999999999999866544433
No 256
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.43 E-value=3.7e-12 Score=114.37 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=103.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEE------EEEecceeeEEEccCCCCCceEEEEEEEecCC-----
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK------EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG----- 304 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~------~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----- 304 (516)
..+.+|+.+.|.|.+ .+ +.+.+.|.+....... .........|.|.+++.+|+|.|+|.+.|...
T Consensus 17 ~~v~~G~~v~L~C~~---~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~ 92 (201)
T 1nkr_A 17 PLVKSEETVILQCWS---DV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVS 92 (201)
T ss_dssp SEEETTCCEEEEEEE---SS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCC
T ss_pred CccCCCCcEEEEEec---cC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCcccc
Confidence 346789999999998 33 6778999653221111 01123457899999999999999999987531
Q ss_pred CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
..+..+.|.|...+..|. +. ......+.+|+.++|.|.+.+ +.
T Consensus 93 ~~s~~~~l~V~~~~~~p~--i~----------------------------------~~p~~~v~~G~~v~L~C~~~~-~~ 135 (201)
T 1nkr_A 93 APSDPLDIVIIGLYEKPS--LS----------------------------------AQPGPTVLAGENVTLSCSSRS-SY 135 (201)
T ss_dssp CCCCCEEEEEECSSCCCE--EE----------------------------------EESCSEECTTCEEEEEEEESS-CC
T ss_pred CCCCCEEEEeeccCCCCc--ee----------------------------------cCCCCccCCCCeEEEEEeCCC-CC
Confidence 234456777766433221 10 011135789999999999986 56
Q ss_pred CceEEEECCeecCCCCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
+.+.|++++..+...........+ ....|.|.++. |+|.|+|.|.+..
T Consensus 136 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~---d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 136 DMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFHD 184 (201)
T ss_dssp SEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC---SCEEEEEEEEETT
T ss_pred ceEEEEECCcccCcccccccccCCceEEEEEeCCcC---CCeeEEEEEEcCC
Confidence 789999999766432211111111 24679998884 9999999998763
No 257
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.43 E-value=8.1e-13 Score=119.65 Aligned_cols=162 Identities=11% Similarity=0.033 Sum_probs=109.3
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee----------c--cCC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC----------Q--IGG 185 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~----------~--~~~ 185 (516)
.+..+.+.+|+++.|.|.+. +.|.+.+.|+++. ..+ . ...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 60 (213)
T 3d9a_L 7 SPATLSVTPGNSVSLSCRAS--------------------------QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPS 60 (213)
T ss_dssp ECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCT
T ss_pred CCccEEEeCCCcEEEEEECC--------------------------CCCCCCEEEEEeCCCCCcEEEEEEcccccccccc
Confidence 35678899999999999999 8888889998743 211 1 125
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEccC
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNAA 254 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~~ 254 (516)
|+.+...+...+|.|.+++.+|+|.|+|.+.+..+.... .+.+.. ..+.. .....|..+.+.|.+ .
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~---~ 137 (213)
T 3d9a_L 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFL---N 137 (213)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE---E
T ss_pred cEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEE---e
Confidence 666666667789999999999999999999987664321 222221 11111 122358899999998 4
Q ss_pred C-CCCc-eeccccccc----c-eEEEEE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcceeE
Q psy7039 255 G-TEKP-KISLDALIG----K-RIKEFV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI 310 (516)
Q Consensus 255 g-~p~p-~i~W~~~~~----~-~~~~~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~ 310 (516)
| .|.+ .+.|.+... . ...... .. ....|.|.++..+|.|.|+|.|.|.........
T Consensus 138 g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3d9a_L 138 NFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 207 (213)
T ss_dssp EEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred eecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence 4 4555 899976211 1 010000 01 134899999999999999999999876654333
No 258
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.43 E-value=3.2e-12 Score=119.38 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=104.9
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--eee------------ccC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~~~------------~~~ 184 (516)
+..+.+.+|+++.|.|.+. +. +.+.+.|++.. ... ...
T Consensus 9 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 62 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGS--------------------------SSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVP 62 (256)
T ss_dssp CSEEEECTTCCEEEEEECC--------------------------TTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCC
T ss_pred CCcEEEcCCCcEEEEEecC--------------------------CCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcC
Confidence 3458899999999999998 54 56677787632 111 123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE-----EEEEeece----------------------ee---e
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-----ASAHVTGT----------------------EF---T 234 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~-----~~~~~~~~----------------------~~---~ 234 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+... .+ .
T Consensus 63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T 3ux9_B 63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG 142 (256)
T ss_dssp TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence 567666666677999999999999999999998643211 11111110 11 1
Q ss_pred eccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEEe--cceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFVT--STTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~~--~~~~~l~i~~ 286 (516)
...+.+|..+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... .....|.|.+
T Consensus 143 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 219 (256)
T 3ux9_B 143 GGLVQPGGSLRLSCAA---SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNS 219 (256)
T ss_dssp CEEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred CeEEcCCCeEEEEEEE---eCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECC
Confidence 2337789999999998 5544 7889996521 11 2222222 3455799999
Q ss_pred CCCCCceEEEEEEEecC
Q psy7039 287 SVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~ 303 (516)
++.+|+|.|+|.|.|..
T Consensus 220 v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 220 LRAEDTAVYYCARYIDF 236 (256)
T ss_dssp CCGGGCEEEEEEEEETT
T ss_pred CChhhCEEEEEEEEcCC
Confidence 99999999999999863
No 259
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.43 E-value=1e-12 Score=123.93 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=105.9
Q ss_pred CCCCCeeEEEEEEcCCCceEEEEEeeceee-eeccccCCceEEEEEEEEccCCCCCceeccccc-ccc------------
Q psy7039 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF-TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGK------------ 269 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~------------ 269 (516)
.+.|.+.|.|.+.+..|............. ....+.+|+.+.|.|.+ .+ +.+.+.|.+. .+.
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~p~~v~v~~G~~v~L~C~~---~~-~~~~v~W~k~~~~~~~~~~~~~~~~~ 79 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGGGMKVIQTPRYLVKGQGQKAKMRCIP---EK-GHPVVFWYQQNKNNEFKFLINFQNQE 79 (270)
T ss_dssp ------------------------CCCEEECSEEEEETTSCEEEEEEC---CT-TCCEEEEEEECTTCCEEEEEEEETTE
T ss_pred hhhhHHHHHHHHhccCCccccccceeEEeCCCeEEEcCCCCEEEEEEe---cC-CCceEEEEEECCCCCcEEEEEECCCC
Confidence 567889999999987766544433333222 23456789999999986 33 6788999651 111
Q ss_pred ----------eEEEEE-ecceeeEEEccCCCCCceEEEEEEEecCC----CcceeEEEEEecCCCCCCCC-ceeeeccCC
Q psy7039 270 ----------RIKEFV-TSTTASLNIKNSVRKDSGIYKIEAKNDYG----IDMADIEVVVVSKPGPPTGP-IDYTTVTPE 333 (516)
Q Consensus 270 ----------~~~~~~-~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----~~~~~~~l~v~~~p~~p~~p-~~~~~~~~~ 333 (516)
++.+.. ......|.|.+++.+|+|.|.|.+.+..+ .......+.|......+..| +.+.
T Consensus 80 ~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~----- 154 (270)
T 3qib_D 80 VLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF----- 154 (270)
T ss_dssp EEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE-----
T ss_pred ceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE-----
Confidence 222211 22356899999999999999999996432 22233456665532222111 0000
Q ss_pred eeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCC------------
Q psy7039 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPD------------ 399 (516)
Q Consensus 334 ~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~------------ 399 (516)
.+....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..+
T Consensus 155 ---------------------------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 207 (270)
T 3qib_D 155 ---------------------------EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQP 207 (270)
T ss_dssp ---------------------------ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCT
T ss_pred ---------------------------CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccc
Confidence 011112335899999999998 5556 89999999877542
Q ss_pred ----CceEEEEcCCeEEEEEcCceecCC-ceEEEEEEEcCCCcee
Q psy7039 400 ----GRIKFETSENQTIYRNKSAKRATD-SGSYTIQLVNTVGSDS 439 (516)
Q Consensus 400 ----~~~~~~~~~~~~~l~i~~~~~~~~-~g~y~c~a~n~~G~~s 439 (516)
..+.+. +.|.|..... +| .|.|+|.|.|......
T Consensus 208 ~~~~~~~~~~-----s~L~i~~~~~-~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 208 ALNDSRYALS-----SRLRVSATFW-QNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp TSSSCCEEEE-----EEEEEEHHHH-HSTTCEEEEEEEECCBCTT
T ss_pred cCCCCCEEEE-----EEEEEcHHHh-ccCCCeEEEEEEecCCCCc
Confidence 122221 4578877776 66 9999999999876543
No 260
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=116.03 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=100.6
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCcccc--CcccceEEecCCeEEEEEeeeecccccc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR--STLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
..+|.|.+++..|.|.|+|.|.|..|..... ..+.+.. +|.+.. .......+.+|+.+.|.|.+.
T Consensus 62 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~l~v~~-----~p~~~~~~~~~~~~~~~~g~~~~l~C~~~------- 128 (197)
T 3lcy_A 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQA-----TPQFHPGYPLKEKYYGAVGSTLRLHVMYI------- 128 (197)
T ss_dssp EEEEEEECCSGGGCEEEEEEEECSSCEEEEE-EEEEEEE-----EEEECTTSCCCSEEEEETTSCEEEEEEEE-------
T ss_pred EEEEEEecCCccCCEEEEEEEECCCCceeEE-EEEEEEc-----CCCCCCCccCCcceeecCCCeEEEEEEEe-------
Confidence 4589999999999999999999877653211 1222221 222221 223456788999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC-CCCeeEEEEEEcCCCceEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+....++.+...+....|.|.++.. +|+|.|+|.+.|..|.....
T Consensus 129 -------------------~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~ 189 (197)
T 3lcy_A 129 -------------------GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189 (197)
T ss_dssp -------------------EESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEE
T ss_pred -------------------eeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEE
Confidence 8999999999999999888888888777778999999995 89999999999999987766
Q ss_pred EEee
Q psy7039 226 AHVT 229 (516)
Q Consensus 226 ~~~~ 229 (516)
..+.
T Consensus 190 ~~l~ 193 (197)
T 3lcy_A 190 LDVE 193 (197)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
No 261
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.42 E-value=6.8e-13 Score=119.53 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~ 315 (516)
..+.+|+.+.|.|.+ |.+.+.|.+.. ..+... ......|.|.+++.+|+|.|+|.+.+.. +..+.+.+.
T Consensus 13 ~~~~~G~~v~L~C~~------p~~~i~W~k~g-~~l~~~-~~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~v~v~ 81 (204)
T 1sy6_A 13 YDYQEDGSVLLTCDA------EAKNITWFKDG-KMIGFL-TEDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQVYYR 81 (204)
T ss_dssp CCCCSSSEEEEEECS------CSSEEEEEETT-EEEEEE-ESSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEEEEEE
T ss_pred EeecCCCeEEEEEcC------CCCEEEEEECC-EECCCC-CCCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEEEEEE
Confidence 345689999999976 78899997632 222111 2456789999999999999999964422 223444443
Q ss_pred cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee
Q psy7039 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395 (516)
Q Consensus 316 ~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~ 395 (516)
..+.....+......... .+.....+.. +....+...........+|+.+.|.|. +.|.+.+.|++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~ 151 (204)
T 1sy6_A 82 MGSADDAKKDAAKKDDAK------KDDAKKDGSD--GNEEMGGITQTPYKVSISGTTVILTCP--QYPGSEILWQHNDKN 151 (204)
T ss_dssp C--------------------------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEE
T ss_pred Eecccccccccccccccc------cccccccccc--ccccccceecCCceeeecCCcEEEEcC--CCCCCceEEEECCEE
Confidence 100000000000000000 0000000000 000000000011122238999999999 788889999999987
Q ss_pred cCCCC-ceEEEEcCCeEEEEEcCc-eecCCceEEEEEEEcCCCce-eEEEEEEE
Q psy7039 396 VSPDG-RIKFETSENQTIYRNKSA-KRATDSGSYTIQLVNTVGSD-SASCKVYV 446 (516)
Q Consensus 396 l~~~~-~~~~~~~~~~~~l~i~~~-~~~~~~g~y~c~a~n~~G~~-s~s~~l~v 446 (516)
+.... ...+... ...|.|.++ .. .|+|.|+|.|.|..|.. +....|.+
T Consensus 152 l~~~~~~~~~~~~--~~~L~I~~v~~~-~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 152 IGGDEDDKNIGSD--EDHLSLKEFSEL-EQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ESCCTTCTTEEEE--TTEEEETTCCHH-HHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CCCccCCceEecC--CCEEEEeeCCcc-ccCEEEEEEeccCCCCceeEEEEEEE
Confidence 75431 1111111 247999999 99 99999999999999973 45555544
No 262
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-13 Score=106.94 Aligned_cols=91 Identities=23% Similarity=0.297 Sum_probs=75.8
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..|..+|++|..+.+. .+.+++.|+|.++ .|||++|.+|.|+|+..+. .|......++..++++|.+|+++..|+|+
T Consensus 3 ~~p~~~P~pP~~~~~~-~~~~sv~L~W~p~-~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~fr 80 (114)
T 2kbg_A 3 EASMREPSPPSIHGQP-SSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQ 80 (114)
T ss_dssp ----CCCCSCCEECCB-CSTTCEEEEECCC-CCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEE
T ss_pred ccCCCCccCCcccccc-cCCCEEEEEEECC-CCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEE
Confidence 3466789999887655 7899999999975 6899999999999999755 67666667778899999999999999999
Q ss_pred EEEecCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASK 100 (516)
Q Consensus 87 ~~a~n~~g~~~~s~ 100 (516)
+.|.|..|.+.++.
T Consensus 81 V~A~N~~G~s~pS~ 94 (114)
T 2kbg_A 81 ITAANRLGYSEPTV 94 (114)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEEeCCcCcCCcC
Confidence 99999999988654
No 263
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.42 E-value=1.4e-12 Score=103.91 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=76.3
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
++.++|++|.++++..++++++.|+|.+|. ++|++|.+|+|+|+..++.|.... ....+++.|.+|++++.|.|+|+
T Consensus 3 t~~~~P~~P~~~~~~~~s~~sv~l~W~~p~-~~g~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~ 79 (106)
T 1x4x_A 3 SGSSGPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQ 79 (106)
T ss_dssp SSCCSCCCCCCCCCEEEETTEEEEECCCCS-CSSSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEcCCCEEEEEEcCCC-CCCCcceEEEEEEEcCCCceEEEE--eCCcceEEEcCCCCCCEEEEEEE
Confidence 567899999999999999999999999986 466789999999998665554332 24678999999999999999999
Q ss_pred EecCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKP 101 (516)
Q Consensus 89 a~n~~g~~~~s~~ 101 (516)
|.|..|.+.++..
T Consensus 80 A~n~~G~g~~S~~ 92 (106)
T 1x4x_A 80 ALSVVGAGPFSEV 92 (106)
T ss_dssp EECSSCCCCBCCC
T ss_pred EEcCCcCCCCcCC
Confidence 9999999876543
No 264
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.42 E-value=2.9e-12 Score=118.69 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=109.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++.+........|.|.+++.+|+|.|.
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (242)
T 2znx_A 11 LSVTPGNSVSLSCRA---SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (242)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EEEcCCCcEEEEEEe---CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence 356789999999998 77788999996521 12333333445678999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....|.|...+..... +. ......+.+ ..+....+.+|+.+.|
T Consensus 88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~-~~--~~~~~~~~~----------------------~~~~~~~v~~G~~v~L 142 (242)
T 2znx_A 88 CQQSNSXPYTFGGGTKLEITGGGGSGGG-GS--GGGGSDIQL----------------------QESGPSLVKPSQTLSL 142 (242)
T ss_dssp EEECSSSSCEECCCEEEEEC------------------CCEE----------------------EEECCSEECTTSCEEE
T ss_pred EeEecCCceEECCCEEEEEcCCCCCCcc-cc--cccccceee----------------------ecCCcceecCCCeEEE
Confidence 9999875432 23456666654431000 00 000000000 0112235789999999
Q ss_pred EEEEeeec--CCceEEEECC--eecC----------------CCCceEEEE--cCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 376 TVPFSGRP--KPTPIWTVNG--DEVS----------------PDGRIKFET--SENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 376 ~C~~~g~p--~~~i~W~~~~--~~l~----------------~~~~~~~~~--~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
.|.+.+.+ .+.+.|+++. ..+. ...++.+.. ......|.|.++.. .|+|.|.|.|.|
T Consensus 143 ~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~~ 221 (242)
T 2znx_A 143 TCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT-EDTATYYCANXD 221 (242)
T ss_dssp EEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCG-GGCEEEEEEETT
T ss_pred EEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCc-CcCEEEEEeccC
Confidence 99999875 4689999853 2110 134555543 23456899999999 999999999998
Q ss_pred CC
Q psy7039 434 TV 435 (516)
Q Consensus 434 ~~ 435 (516)
..
T Consensus 222 ~~ 223 (242)
T 2znx_A 222 GD 223 (242)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 265
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.42 E-value=3.4e-12 Score=117.84 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=107.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC----ceeeEEeeCC--eee---c-------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP----FLNHGWSING--QVC---Q------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~i~W~~~~--~~~---~------- 182 (516)
..+..+.+.+|+.+.|.|.+. +.| .+.+.|+++. ..+ .
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~ 59 (240)
T 1moe_A 6 QSPASLAVSLGQRATMSCRAG--------------------------ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLE 59 (240)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCEETTEECEEEEEECTTSCCEEEEETTTEEC
T ss_pred eeCCeEEecCCCCEEEEEeCC--------------------------CccccCCCceEEEEEECCCCCceEEEEEecccC
Confidence 345668899999999999999 777 7889998842 211 0
Q ss_pred --cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeece-----------eeeeccccCCceEEE
Q psy7039 183 --IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTGT-----------EFTDNNVHEGKAYEY 246 (516)
Q Consensus 183 --~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~~-----------~~~~~~l~~g~~~~~ 246 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.|..+.. ...+.+... ......+.+|+.+.|
T Consensus 60 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L 139 (240)
T 1moe_A 60 SGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKL 139 (240)
T ss_dssp TTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEE
T ss_pred cCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEE
Confidence 1346666655667799999999999999999999875431 122222211 112235678999999
Q ss_pred EEEEEccCCCC--Cceecccccc---c---------------------ceEEEEEe--cceeeEEEccCCCCCceEEEEE
Q psy7039 247 RVSAVNAAGTE--KPKISLDALI---G---------------------KRIKEFVT--STTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 247 ~~~~~~~~g~p--~p~i~W~~~~---~---------------------~~~~~~~~--~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
.|.+ .|.+ .+.+.|.+.. . .++.+... .....|.|.+++.+|+|.|+|.
T Consensus 140 ~C~~---~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 216 (240)
T 1moe_A 140 SCTA---SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCA 216 (240)
T ss_dssp EEEE---ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEE---cCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEE
Confidence 9998 6665 4689997621 1 11222211 3446899999999999999999
Q ss_pred EEe
Q psy7039 299 AKN 301 (516)
Q Consensus 299 a~n 301 (516)
|.+
T Consensus 217 a~~ 219 (240)
T 1moe_A 217 PFG 219 (240)
T ss_dssp ECS
T ss_pred EEe
Confidence 985
No 266
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.42 E-value=1.6e-12 Score=117.64 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=109.7
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .|.+.+.+.|.+.. ..++..........|.|.+++.+|+|.|+
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 11 LPASLGDRVTINCQA---SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp EEECTTCCEEEEEEE---SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred EEecCCCcEEEEEEe---CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 456789999999998 77788999996511 22333334456679999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.|.|..+.. .....+.|.....+|. +.+ ......+..|..+.|
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~---------------------------------~~~~~~~~~~~~v~l 132 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPT--VSI---------------------------------FPPSSEQLGTGSATL 132 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCE--EEE---------------------------------ECCCHHHHTTTEEEE
T ss_pred EecccCCceEEcCCceEEEeccCCCce--eee---------------------------------eCCCceecCCCCcEE
Confidence 9999876432 3345566633222221 000 011112335778999
Q ss_pred EEEEeeecCC--ceEEEECCeecCCCC--ceEEEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 376 TVPFSGRPKP--TPIWTVNGDEVSPDG--RIKFETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 376 ~C~~~g~p~~--~i~W~~~~~~l~~~~--~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.|.+.|.+++ .+.|++++..+..+. ......... .+.|.|..... +|.|.|+|.|.|.......
T Consensus 133 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~g~YtC~v~n~~~~~~~ 205 (213)
T 3r06_A 133 VCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADY-ERHNLYTCEVTHKTSTAAI 205 (213)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCEEEEEEEETTCSSCE
T ss_pred EEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHh-ccCCeEEEEEEecccCcce
Confidence 9999987653 899999998775421 000111111 13677888888 8899999999998755443
No 267
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.42 E-value=2.3e-12 Score=116.72 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCcEEEeCCC-cCCCeEEEEEEEecCCCCCCCCCCCcceEec--cCCCCCccccCcccceEEecCCeEEEEEeeeecccc
Q psy7039 68 GETSCTVPGL-IEGETYQFQVRAVNAAGPGEASKPTAPIVAK--PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144 (516)
Q Consensus 68 ~~~~~~i~~l-~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~--~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~ 144 (516)
....|.|.++ ...|.|.|+|.|.|..|.... ...+.+... .....|.+. ..+....+.+|+.+.|.|.+.
T Consensus 61 ~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~----- 133 (212)
T 2yd6_A 61 SGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAAS----- 133 (212)
T ss_dssp TEEEEEECSCCTTTTCEEEEEEEEETTEEEEE-EEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEEEEEEE-----
T ss_pred CceEEEEeccCCCCCCeEEEEEEEcCCCcEEE-EEEEEEeccCccCCCcceee-cCCcceeEecCCCEEEEEEec-----
Confidence 4567999999 499999999999998765321 112222211 112335555 455667889999999999999
Q ss_pred ccCccccccccccCccceeecCcCceeeEEeeCCeeeccC---CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 145 TKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG---GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+.+.|++++..+... .++.....+....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 134 ---------------------g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~ 192 (212)
T 2yd6_A 134 ---------------------GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192 (212)
T ss_dssp ---------------------CSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred ---------------------CCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCc
Confidence 9999999999999988754 4555555566789999999999999999999999887
Q ss_pred eEE
Q psy7039 222 ATA 224 (516)
Q Consensus 222 ~~~ 224 (516)
...
T Consensus 193 ~~s 195 (212)
T 2yd6_A 193 RYS 195 (212)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 268
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=99.42 E-value=1.8e-11 Score=108.23 Aligned_cols=171 Identities=17% Similarity=0.300 Sum_probs=109.9
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
....|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+..++.+. .........++.|.+|++++.|.|+|+|
T Consensus 3 ~~t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a 77 (186)
T 1qr4_A 3 AGTDLDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKN-EMEIPVDSTSFILRGLDAGTEYTISLVA 77 (186)
T ss_dssp -----CCCEEEEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEE-EEEECTTCSEEEEESCCSSCEEEEEEEE
T ss_pred ccCCCcCCCceEEEecCCCEEEEEEeCCC----CCccEEEEEEEeCCCCee-EEECCCCCCEEEECCCCCCCEEEEEEEE
Confidence 45679999999999999999999999973 368899999996554443 3344567889999999999999999999
Q ss_pred ecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc
Q psy7039 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF 169 (516)
Q Consensus 90 ~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 169 (516)
.|..|.+.+ ..+.....+.+|. .+. +... +...
T Consensus 78 ~~~~~~s~~----~~~~~~t~p~~P~-------~l~----------~~~~--------------------------~~~s 110 (186)
T 1qr4_A 78 EKGRHKSKP----TTIKGSTVVGSPK-------GIS----------FSDI--------------------------TENS 110 (186)
T ss_dssp ESSSCBCCC----EEEEEECCCCCCS-------CEE----------EESC--------------------------CSSC
T ss_pred EcCCccCCC----EEEEEECCCCCCC-------ccE----------EEEe--------------------------CCCE
Confidence 996554432 2233333323331 122 2222 3455
Q ss_pred eeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce--EEEEEeeceeeeeccccCCceEEEE
Q psy7039 170 LNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA--TASAHVTGTEFTDNNVHEGKAYEYR 247 (516)
Q Consensus 170 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~--~~~~~~~~~~~~~~~l~~g~~~~~~ 247 (516)
..+.|......+. .|...+....+.. ..........+.+.+|.+|..|.++
T Consensus 111 v~l~W~~p~~~i~---------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 163 (186)
T 1qr4_A 111 ATVSWTPPRSRVD---------------------------SYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVN 163 (186)
T ss_dssp EEEEECCCSSCCS---------------------------EEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEE
T ss_pred EEEEEECCCCccc---------------------------EEEEEEEeCCCCCceEEEcCCCcCEEEEcCCCCCCEEEEE
Confidence 6778865432111 3444444332221 1222234466788899999999999
Q ss_pred EEEEccCCCCCc
Q psy7039 248 VSAVNAAGTEKP 259 (516)
Q Consensus 248 ~~~~~~~g~p~p 259 (516)
+.|.+..|...|
T Consensus 164 V~A~~~~g~s~p 175 (186)
T 1qr4_A 164 IISVKGFEESEP 175 (186)
T ss_dssp EEEEETTEECCC
T ss_pred EEEEcCCCcCcC
Confidence 999887765444
No 269
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.42 E-value=3.4e-12 Score=119.23 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=109.0
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceee----------------
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVC---------------- 181 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~---------------- 181 (516)
..+.+.+|+++.|.|.+. +.+ .+.+.|++. +..+
T Consensus 10 ~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~ 63 (256)
T 3umt_A 10 GLELVKPGASVKISCKTS--------------------------GYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYN 63 (256)
T ss_dssp CCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEEC
T ss_pred CceEEcCCCCEEEEEEEe--------------------------cccccccEEEEEEECCCCCcEEEEEEeccCCccccc
Confidence 446789999999999998 433 456666652 1111
Q ss_pred -ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCC----Cce--EEEEEeec-----------------eee--
Q psy7039 182 -QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNL----GTA--TASAHVTG-----------------TEF-- 233 (516)
Q Consensus 182 -~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~----g~~--~~~~~~~~-----------------~~~-- 233 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+.. +.. ...+.+.. ..+
T Consensus 64 ~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~ 143 (256)
T 3umt_A 64 QKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQ 143 (256)
T ss_dssp GGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEE
T ss_pred ccccceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEc
Confidence 11246655532 346679999999999999999998861 111 11122221 111
Q ss_pred --eeccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCc
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDS 292 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~ 292 (516)
....+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++..........|.|.+++.+|+
T Consensus 144 ~p~~~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 220 (256)
T 3umt_A 144 SPSSLSASLGERVSITCRA---SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDF 220 (256)
T ss_dssp ECSEEEECTTCCEEEEEEE---SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred CCCeEEEECCCCEEEEEEE---ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHC
Confidence 12456789999999998 77788899996521 1223333345566799999999999
Q ss_pred eEEEEEEEecCCCc-ceeEEEEEecCC
Q psy7039 293 GIYKIEAKNDYGID-MADIEVVVVSKP 318 (516)
Q Consensus 293 g~y~c~a~n~~g~~-~~~~~l~v~~~p 318 (516)
|.|+|.|.|..+.. .....|.|...+
T Consensus 221 G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 221 VDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp SEEEEEECSSSSCEECCCEEEEEC---
T ss_pred EEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 99999999864432 224566666544
No 270
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.42 E-value=2e-12 Score=119.24 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=107.9
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c---------------------ceEEEEE-ecceeeEEEccCCCCCc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G---------------------KRIKEFV-TSTTASLNIKNSVRKDS 292 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~---------------------~~~~~~~-~~~~~~l~i~~l~~~d~ 292 (516)
..+.+|+.+.|.|. .+.+.+.+.|.+.. + .++.+.. ......|.|.+++.+|+
T Consensus 10 ~~v~~G~~v~L~C~----~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds 85 (238)
T 2p1y_A 10 KVAVTGGKVTLSCN----QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT 85 (238)
T ss_dssp EEEETTCCEEEEEE----ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred eEEeCCCEEEEEee----cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence 35678999999998 25578899996631 1 1222221 12355899999999999
Q ss_pred eEEEEEEEecCCCc-----ceeEEEEEecCCCCCCCC-----ceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 293 GIYKIEAKNDYGID-----MADIEVVVVSKPGPPTGP-----IDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 293 g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~p-----~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
|.|+|.|.|..|.. .....|.|...+..+..| ..+ ...+
T Consensus 86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v-------------------------------~~~p 134 (238)
T 2p1y_A 86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQV-------------------------------RQSP 134 (238)
T ss_dssp EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCC-------------------------------EEEC
T ss_pred eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeE-------------------------------EccC
Confidence 99999999876531 123455555433200000 000 0123
Q ss_pred ccEEEEcCCeEEEEEEEeeecCCceEEEECCe--ec------------CCCCceEEE--EcCCeEEEEEcCceecCCceE
Q psy7039 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD--EV------------SPDGRIKFE--TSENQTIYRNKSAKRATDSGS 426 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~--~l------------~~~~~~~~~--~~~~~~~l~i~~~~~~~~~g~ 426 (516)
....+.+|+.+.|.|.+.+.|.+.+.|++++. .. ....++.+. .......|.|.++.. .|+|.
T Consensus 135 ~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~D~G~ 213 (238)
T 2p1y_A 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP-GDSAT 213 (238)
T ss_dssp SEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG-GGCEE
T ss_pred ceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH-HHCEE
Confidence 45678999999999999999999999999642 10 113455544 233457899999999 99999
Q ss_pred EEEEEEcCC
Q psy7039 427 YTIQLVNTV 435 (516)
Q Consensus 427 y~c~a~n~~ 435 (516)
|+|.|.|..
T Consensus 214 Y~C~a~n~~ 222 (238)
T 2p1y_A 214 YFCAAIDTN 222 (238)
T ss_dssp EEEEEEETT
T ss_pred EEEEEeeCC
Confidence 999999984
No 271
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.42 E-value=3.9e-12 Score=118.15 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=109.1
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++..........|.|.+++.+|
T Consensus 11 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 87 (247)
T 1svz_A 11 LPVSLGDQASISCRS---SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 87 (247)
T ss_dssp EEECTTCCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEecCCCCEEEEEeC---CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence 356789999999998 6666 6889996521 123333334456689999999999
Q ss_pred ceEEEEEEEecCCC-cceeEEEEEecCCCCC-------CCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 292 SGIYKIEAKNDYGI-DMADIEVVVVSKPGPP-------TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 292 ~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p-------~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+|.|.|.+.|..+. ......|.|...+... ..++.+. ...
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~ 135 (247)
T 1svz_A 88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQ--------------------------------QSG 135 (247)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE--------------------------------ECC
T ss_pred CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEe--------------------------------CCC
Confidence 99999999987553 2234566665543210 0001100 112
Q ss_pred cEEEEcCCeEEEEEEEeeec--CCceEEEECC--eec------C-----------CCCceEEEE--cCCeEEEEEcCcee
Q psy7039 364 DMTVLAGEEFTITVPFSGRP--KPTPIWTVNG--DEV------S-----------PDGRIKFET--SENQTIYRNKSAKR 420 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~l------~-----------~~~~~~~~~--~~~~~~l~i~~~~~ 420 (516)
...+..|+.+.|.|.+.+.+ .+.+.|++++ ..+ . ...++.+.. ......|.|.++..
T Consensus 136 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 215 (247)
T 1svz_A 136 PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKN 215 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred ceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCCh
Confidence 24588999999999998874 5689999863 111 0 134555543 34567899999999
Q ss_pred cCCceEEEEEEEcC
Q psy7039 421 ATDSGSYTIQLVNT 434 (516)
Q Consensus 421 ~~~~g~y~c~a~n~ 434 (516)
.|+|.|.|.|.|.
T Consensus 216 -~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 216 -EDTATYFCVRDRH 228 (247)
T ss_dssp -GGCEEEEEEEEEG
T ss_pred -hHCEEEEEEEecc
Confidence 9999999999985
No 272
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.41 E-value=7.8e-13 Score=120.60 Aligned_cols=172 Identities=12% Similarity=0.033 Sum_probs=110.0
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc----eeeEEeeCCeee-------------cc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF----LNHGWSINGQVC-------------QI 183 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~i~W~~~~~~~-------------~~ 183 (516)
+..+.+.+|+.+.|.|.+.. +.+. ..+.|++++... ..
T Consensus 6 p~~v~~~~G~~v~L~C~~~~-------------------------~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~ 60 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQV-------------------------PNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCC-------------------------CSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECS
T ss_pred CCcEEEEeCCCEEEEeeecc-------------------------CCCCCccceEEEEEeCCCCceEEEEECCCCCCcCC
Confidence 34566789999999999961 2333 348888875321 11
Q ss_pred CCceEEee-----cCCeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee---e---eeccccCCceE-EEEEEE
Q psy7039 184 GGRADVQT-----TKSETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE---F---TDNNVHEGKAY-EYRVSA 250 (516)
Q Consensus 184 ~~~~~~~~-----~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~---~---~~~~l~~g~~~-~~~~~~ 250 (516)
..|+.+.. .....+|.|.+++.+|+|.|+|.+.+.. +.......+.+.. + .......|... .+.|.+
T Consensus 61 ~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~~~g~~~~~l~C~~ 140 (221)
T 3eow_R 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVS 140 (221)
T ss_dssp CSSCEEESSCSSCCCCCCEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCCCCSSSCCEEEEEE
T ss_pred CCcEEEecccCCCCCCCceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcccCCceEEEEEEEC
Confidence 34454443 2246799999999999999999999866 5544443322211 1 11122567777 499998
Q ss_pred EccCCCCCceeccccc-ccceEEEE-E------ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCC
Q psy7039 251 VNAAGTEKPKISLDAL-IGKRIKEF-V------TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321 (516)
Q Consensus 251 ~~~~g~p~p~i~W~~~-~~~~~~~~-~------~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p 321 (516)
. .|.|.|.++|.+. .+...... . ......|.|.++..+|.|.|+|.|.|..+..... +.|...|..|
T Consensus 141 ~--~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~--~~v~~~~~~~ 215 (221)
T 3eow_R 141 T--GGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQL--LTVSLTVYYP 215 (221)
T ss_dssp E--SCSSCCCEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEE--EEECCCCCC-
T ss_pred C--CccCCCeeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeE--EEEEEEEEcc
Confidence 3 5889999999542 11111111 0 1223578999999999999999999988775544 4455555443
No 273
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.41 E-value=3.1e-12 Score=118.64 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=50.5
Q ss_pred EEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEE-------cCC----eEEEEEcCceecCC-ceEEEEEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFET-------SEN----QTIYRNKSAKRATD-SGSYTIQLV 432 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~-------~~~----~~~l~i~~~~~~~~-~g~y~c~a~ 432 (516)
+..|+.+.|.|.+.|.+++ .+.|+++|..+.......... ..+ .+.|.|..... .| .|.|+|.|.
T Consensus 137 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~d~~g~YtC~v~ 215 (246)
T 4dzb_B 137 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW-QNPRNHFRCQVQ 215 (246)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH-TCTTCEEEEEEE
T ss_pred ccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHh-ccCCCeEEEEEE
Confidence 3458999999999998765 899999998775421110000 011 13588888877 77 999999999
Q ss_pred cCCCcee
Q psy7039 433 NTVGSDS 439 (516)
Q Consensus 433 n~~G~~s 439 (516)
|......
T Consensus 216 ~~~~~~~ 222 (246)
T 4dzb_B 216 FYGLSEN 222 (246)
T ss_dssp ECCBCTT
T ss_pred ecCCCCc
Confidence 9876544
No 274
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.41 E-value=5.8e-12 Score=114.31 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=108.0
Q ss_pred ccccCCceEEEEEEEEccCCC-CCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT-EKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIY 295 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~-p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y 295 (516)
..+.+|+.+.|.|.+. .+. +.+.+.|.+.. ..++..........|.|.+++.+|+|.|
T Consensus 10 ~~v~~G~~v~L~C~v~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (216)
T 2xzc_L 10 VSAAPGQKVTISCSGS--SSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (216)
T ss_dssp EEECTTCCEEEEEECC--TTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred EEecCCCeEEEEEEee--cCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEE
Confidence 4567899999999852 333 25789996521 1233333345567899999999999999
Q ss_pred EEEEEecCC--CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 296 KIEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 296 ~c~a~n~~g--~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
+|.|.|..+ .......|.|...+.+|. +.+. ........|+.+
T Consensus 88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g~~v 132 (216)
T 2xzc_L 88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPS--VFIF---------------------------------PPSDEQLKSGTA 132 (216)
T ss_dssp EEEEECTTSCEEEBCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHTTEE
T ss_pred EEEEEeCCCcceECCCEEEEEcCCCCCCc--eEEe---------------------------------CCChhhccCCcE
Confidence 999999876 122334566643322221 0000 000011258899
Q ss_pred EEEEEEeee-cCC-ceEEEECCeecCCCCceE--EEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 374 TITVPFSGR-PKP-TPIWTVNGDEVSPDGRIK--FETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 374 ~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~--~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|.|.+.|. |.+ .+.|++++..+..+.... .....+ .+.|.|..+.. .|.|.|+|.|.|........
T Consensus 133 ~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~~~~ 208 (216)
T 2xzc_L 133 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADY-EKHKVYACEVTHQGLSSPVT 208 (216)
T ss_dssp EEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-TTCCEEEEEEECTTCSSCEE
T ss_pred EEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHh-CCCCcEEEEEEcCCCCCceE
Confidence 999999985 444 899999998775431111 111111 13789999999 99999999999987664433
No 275
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.41 E-value=5.8e-12 Score=113.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=107.5
Q ss_pred ccccCCceEEEEEEEEccCCCC---Cceecccccc-c------------------ceEEEEEecceeeEEEccCCCCCce
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE---KPKISLDALI-G------------------KRIKEFVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p---~p~i~W~~~~-~------------------~~~~~~~~~~~~~l~i~~l~~~d~g 293 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++..........|.|.+++.+|+|
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 10 LTTSPGETVTLTCRS---STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp EEECTTCCEEEEEEE---SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EeecCCCCEEEEEEe---cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 456789999999998 6666 4789996522 1 2233333445668999999999999
Q ss_pred EEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe
Q psy7039 294 IYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372 (516)
Q Consensus 294 ~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~ 372 (516)
.|+|.|.|..+.. .....+.|...+..+.. +.+. ........|+.
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~~---------------------------------~~~~~~~~g~~ 132 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPT-VTLF---------------------------------PPSSEELSTAK 132 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCE-EEEE---------------------------------CCCHHHHTTTE
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCe-eEEe---------------------------------CCCHHHccCCc
Confidence 9999999976532 23345555433211100 0000 00111236889
Q ss_pred EEEEEEEeeecCC--ceEEEECCeecCCCCceE-EEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 373 FTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK-FETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 373 ~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~-~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
+.|.|.+.|.+++ .+.|++++..+..+.... ..... ....|.|..+.. .|.|.|+|.|.|..+.
T Consensus 133 v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 133 ATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW-ERHSSYSCQVTHEGHS 204 (212)
T ss_dssp EEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHH-TTCCEEEEEEEETTEE
T ss_pred EEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHc-cCCCcEEEEEEeCCcc
Confidence 9999999986544 899999998775432110 11111 124688999988 9999999999998755
No 276
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.41 E-value=2.6e-12 Score=113.81 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=91.3
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..|.... ....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 56 ~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~--~~~~l~v~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~-------- 121 (189)
T 2v44_A 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQE--ATVVLEIY---QKLTFR-EVVSPQEFKQGEDAEVVCRVS-------- 121 (189)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTSCEEE--EEEEEEEE---CCCEEE-SCCCSEEEETTSCEEECCEEE--------
T ss_pred CeEEEEEccCCcccCeEEEEEEEeCCCCcEE--EEEEEEEe---cCCcee-ecCCcEEEeCCCCEEEEEEEC--------
Confidence 3568999999999999999999988665321 12222222 345444 345557889999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeecc--CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI--GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~ 225 (516)
+.|.+.+.|++++..+.. ..++.... ...|.|.+++.+|+|.|+|.+.|..+.....
T Consensus 122 ------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~ 180 (189)
T 2v44_A 122 ------------------SSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDF 180 (189)
T ss_dssp ------------------CSSCCEEEEEEEC--CEECCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEE
T ss_pred ------------------cCCCCcEEEEECCcEEeccCCCCEEEec---CCcEEEEEcCcccCeEEEEEEEccccCceee
Confidence 999999999999887753 34554432 2389999999999999999999988665443
No 277
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.41 E-value=3.2e-12 Score=118.66 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=106.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--eee---c------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QVC---Q------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~~---~------ 182 (516)
..+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. ..+ .
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 59 (247)
T 1svz_A 6 QTPLYLPVSLGDQASISCRSS--------------------------QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNR 59 (247)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEE
T ss_pred ecCCeEEecCCCCEEEEEeCC--------------------------CcccccCCCceEEEEEECCCCCceEEEEEeccc
Confidence 345668899999999999998 666 5788888732 111 0
Q ss_pred ---cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeece---------------ee---eeccc
Q psy7039 183 ---IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTGT---------------EF---TDNNV 238 (516)
Q Consensus 183 ---~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~~---------------~~---~~~~l 238 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.|..+... ..+.+... .+ ....+
T Consensus 60 ~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v 139 (247)
T 1svz_A 60 FSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELK 139 (247)
T ss_dssp CTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEE
T ss_pred CCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceee
Confidence 13566666556677999999999999999999998744311 12222111 11 12237
Q ss_pred cCCceEEEEEEEEccCCCC--Cceecccccc------------------------cceEEEEE--ecceeeEEEccCCCC
Q psy7039 239 HEGKAYEYRVSAVNAAGTE--KPKISLDALI------------------------GKRIKEFV--TSTTASLNIKNSVRK 290 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~------------------------~~~~~~~~--~~~~~~l~i~~l~~~ 290 (516)
.+|+.+.|.|.+ .|.+ .+.+.|.+.. ..++.+.. ......|.|.+++.+
T Consensus 140 ~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 216 (247)
T 1svz_A 140 KPGETVKISCKA---TNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE 216 (247)
T ss_dssp CTTCCEEEEEEE---ESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred cCCCcEEEEEEE---cCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChh
Confidence 889999999998 4543 5689996521 11222222 233568999999999
Q ss_pred CceEEEEEEEec
Q psy7039 291 DSGIYKIEAKND 302 (516)
Q Consensus 291 d~g~y~c~a~n~ 302 (516)
|+|.|+|.|.|.
T Consensus 217 DsG~Y~C~a~n~ 228 (247)
T 1svz_A 217 DTATYFCVRDRH 228 (247)
T ss_dssp GCEEEEEEEEEG
T ss_pred HCEEEEEEEecc
Confidence 999999999985
No 278
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.41 E-value=3.3e-12 Score=115.64 Aligned_cols=153 Identities=10% Similarity=0.052 Sum_probs=105.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eeec------------cC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVCQ------------IG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~~------------~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|+++. ..+. ..
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (213)
T 3nl4_L 6 QTPASVSEPVGGTVTIKCQAS--------------------------QSISSYLAWYQQKPGQRPRLLIYETSTLASGVP 59 (213)
T ss_dssp EECSEEEEETTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCeEEEcCCCCEEEEEEec--------------------------CCCCceEEEEEECCCCCcEEEEEeCCccCCCCC
Confidence 345668899999999999999 7788899998832 1111 13
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc--e---EEEEEeec----eeee----eccccCCceEEEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT--A---TASAHVTG----TEFT----DNNVHEGKAYEYRVSAV 251 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--~---~~~~~~~~----~~~~----~~~l~~g~~~~~~~~~~ 251 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+. . ...+.+.. ..+. ...+.+|..+.+.|.+
T Consensus 60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~- 138 (213)
T 3nl4_L 60 SRFKGSGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVA- 138 (213)
T ss_dssp TTEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEE-
T ss_pred ccEEEecCCCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEE-
Confidence 5777766677789999999999999999999987652 1 11222211 1111 1124468999999998
Q ss_pred ccCC-CCCceecccccccc----e-EEEE-E------ecceeeEEEccCCCCCceEEEEEEE
Q psy7039 252 NAAG-TEKPKISLDALIGK----R-IKEF-V------TSTTASLNIKNSVRKDSGIYKIEAK 300 (516)
Q Consensus 252 ~~~g-~p~p~i~W~~~~~~----~-~~~~-~------~~~~~~l~i~~l~~~d~g~y~c~a~ 300 (516)
.| .|.|.+.|.+.... . .... . ......|.|..+..+|.|.|+|.|.
T Consensus 139 --~g~~P~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 139 --NKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp --EEEBSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred --ecccCCcEEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 45 78899999652111 0 0000 0 0112568899999999999999998
No 279
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.40 E-value=8.6e-12 Score=118.38 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=112.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eeec------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVCQ------------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~~------------ 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++++ ..+.
T Consensus 31 ~~p~~~~v~~G~~v~L~C~~~--------------------------g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~ 84 (282)
T 1qok_A 31 QQSGAELVRSGTSVKLSCTAS--------------------------GFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDT 84 (282)
T ss_dssp EECCCEEEETTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEE
T ss_pred ECCCCEEEeCCCeEEEEEecc--------------------------CCCCCCceEEEEEeCCCCCcEEEEEEecCCCcc
Confidence 344568899999999999998 653 5678888743 1110
Q ss_pred -----cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCC---ceE----EEEEeece----------------e
Q psy7039 183 -----IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLG---TAT----ASAHVTGT----------------E 232 (516)
Q Consensus 183 -----~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g---~~~----~~~~~~~~----------------~ 232 (516)
...|+.+.. .+...+|.|.+++.+|+|.|.|.+.|..| ... ..+.+... .
T Consensus 85 ~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~ 164 (282)
T 1qok_A 85 EYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENV 164 (282)
T ss_dssp EECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCC
T ss_pred ccCchhcCcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceE
Confidence 124666554 33567999999999999999999998865 111 12222111 1
Q ss_pred e----eeccccCCceEEEEEEEEccCCCCCceeccccc-cc------------------ceEEEEEecceeeEEEccCCC
Q psy7039 233 F----TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IG------------------KRIKEFVTSTTASLNIKNSVR 289 (516)
Q Consensus 233 ~----~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~------------------~~~~~~~~~~~~~l~i~~l~~ 289 (516)
+ ....+.+|+.+.+.|.+ .|.+ +.+.|.+. .+ .++..........|.|.++..
T Consensus 165 ~~~~p~~~~v~~G~~v~L~C~~---~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 240 (282)
T 1qok_A 165 LTQSPAIMSASPGEKVTITCSA---SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA 240 (282)
T ss_dssp EEEECSEEEECTTCCEEEEEEE---SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EecCCCEEEEcCCCcEEEEEEe---cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence 1 12347789999999998 6777 89999662 11 222333344567899999999
Q ss_pred CCceEEEEEEEecCCCc-ceeEEEEEec
Q psy7039 290 KDSGIYKIEAKNDYGID-MADIEVVVVS 316 (516)
Q Consensus 290 ~d~g~y~c~a~n~~g~~-~~~~~l~v~~ 316 (516)
+|+|.|+|.|.|..+.. .....|.|..
T Consensus 241 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 268 (282)
T 1qok_A 241 EDAATYYCQQRSSYPLTFGAGTKLELKR 268 (282)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred hHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence 99999999998754321 2235666653
No 280
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.40 E-value=5.1e-12 Score=118.00 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=110.3
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGI 294 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~ 294 (516)
..+.+|+.+.|.|.+ .+. +.+.+.|.+.. ..++..........|.|.+++.+|+|.
T Consensus 12 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 12 VSGAPGQRVTISCSG---SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp EEECTTCCEEEEEEC---CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred EEEcCCCcEEEEEec---CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 456789999999998 555 77889996521 123344444556689999999999999
Q ss_pred EEEEEEecCCC---cceeEEEEEecCCCCCCCC--ceeeec--cCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 295 YKIEAKNDYGI---DMADIEVVVVSKPGPPTGP--IDYTTV--TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 295 y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p--~~~~~~--~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
|+|.+.|..+. ......|.|...+...... +..... ....+.+ .......+
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~v 146 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL----------------------VESGGGLV 146 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC----------------------CCEE----------------------EEECCEEE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE----------------------EcCCCeEE
Confidence 99999986542 2234567776554321100 000000 0000001 11233458
Q ss_pred EcCCeEEEEEEEeeec--CCceEEEECC--eec-----------------CCCCceEEEEc--CCeEEEEEcCceecCCc
Q psy7039 368 LAGEEFTITVPFSGRP--KPTPIWTVNG--DEV-----------------SPDGRIKFETS--ENQTIYRNKSAKRATDS 424 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p--~~~i~W~~~~--~~l-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~~~~ 424 (516)
.+|+.+.|.|.+.+.+ .+.+.|+++. ..+ ....++.+... .....|+|.++.. .|+
T Consensus 147 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~Ds 225 (256)
T 3ux9_B 147 QPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRA-EDT 225 (256)
T ss_dssp CTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-GGC
T ss_pred cCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCCh-hhC
Confidence 8999999999998876 6799999863 211 01235655543 3456799999999 999
Q ss_pred eEEEEEEEcCC
Q psy7039 425 GSYTIQLVNTV 435 (516)
Q Consensus 425 g~y~c~a~n~~ 435 (516)
|.|+|.|.|..
T Consensus 226 G~Y~C~~~~~~ 236 (256)
T 3ux9_B 226 AVYYCARYIDF 236 (256)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEEcCC
Confidence 99999999974
No 281
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=99.40 E-value=2.9e-11 Score=108.68 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=117.6
Q ss_pred ccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 7 IKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 7 ~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
.....++| +|.+|.+..+++++|.|+|.+|. ++.+.+|.|+|...+. .+..........+++.|.+|.+++.|.|
T Consensus 17 ~~~~~~~P-~P~~l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 92 (203)
T 2gee_A 17 RGSHMEVP-QPTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDI 92 (203)
T ss_dssp CCSSSCCC-CCEEEEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEE
T ss_pred cCccccCc-CCCccEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEE
Confidence 34456788 89999999999999999999974 3468999999998765 3444445556789999999999999999
Q ss_pred EEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec
Q psy7039 86 QVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL 165 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (516)
+|+|.|..|.+.+. . +.......+| ..|.+...
T Consensus 93 ~V~a~~~~g~s~~~---~-~~t~~~~p~P-----------------~~l~~~~~-------------------------- 125 (203)
T 2gee_A 93 SVYTVKNGGESTPT---T-LTQQTAVPPP-----------------TDLRFTNI-------------------------- 125 (203)
T ss_dssp EEEEESSSCBCCCE---E-EEEECCCCCC-----------------EEEEEEEE--------------------------
T ss_pred EEEEEeCCCccccE---e-eeecCCCcCC-----------------CceEEEEc--------------------------
Confidence 99999987765432 1 2221111122 12333332
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEE--EEEeeceeeeeccccCCc
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATA--SAHVTGTEFTDNNVHEGK 242 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~--~~~~~~~~~~~~~l~~g~ 242 (516)
+.....+.|...... ... .|...+....+. ... ........+.+.+|.+|.
T Consensus 126 ~~~sv~l~W~~p~~~--~i~------------------------~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 179 (203)
T 2gee_A 126 GPDTMRVTWAPPPSI--DLT------------------------NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 179 (203)
T ss_dssp ETTEEEEEEECCSSC--CCS------------------------EEEEEEEETTCGGGCEEEEECTTCCEEEECSCCTTC
T ss_pred CCCEEEEEEcCCCCC--Ccc------------------------EEEEEEEECCCCCccEEEEcCCCcCEEEECCCCCCC
Confidence 445667888764211 001 344444432221 111 112234567888999999
Q ss_pred eEEEEEEEEccCCCCCce
Q psy7039 243 AYEYRVSAVNAAGTEKPK 260 (516)
Q Consensus 243 ~~~~~~~~~~~~g~p~p~ 260 (516)
.|.+++.|.+..|...|.
T Consensus 180 ~Y~~~V~A~~~~g~s~p~ 197 (203)
T 2gee_A 180 EYVVSVSSVYEQHESTPL 197 (203)
T ss_dssp EEEEEEEEEETTEECCCE
T ss_pred EEEEEEEEecCCCcCCCe
Confidence 999999999988876654
No 282
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-12 Score=104.45 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=88.4
Q ss_pred CCCCCCCCCcceEeccCCCCCccccC--cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCcee
Q psy7039 94 GPGEASKPTAPIVAKPKNLAPRIDRS--TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN 171 (516)
Q Consensus 94 g~~~~s~~~~~~~~~~~~~~p~~~~~--~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 171 (516)
|.+.++.....+.+.....+|.|... ....+.+.+|+.+.|.|.+. |.|.+.
T Consensus 2 G~s~p~~~~~~v~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~ 55 (118)
T 2e7c_A 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--------------------------GKPRPQ 55 (118)
T ss_dssp CCCCCCCCCCCCCCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEE--------------------------EESCCE
T ss_pred CcCCccccCCCEEEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEc--------------------------cCCCCE
Confidence 66777777766766666677887522 45778999999999999999 999999
Q ss_pred eEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 172 HGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 172 i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+.|++++..+. ..++.+...+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 56 i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 111 (118)
T 2e7c_A 56 VVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111 (118)
T ss_dssp EEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred EEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence 99999999886 566777667777889999999999999999999999876555443
No 283
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.40 E-value=1.6e-12 Score=117.42 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=106.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccCCc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIGGR 186 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~~~ 186 (516)
+..+.+.+|+.+.|.|.+. +.|.+.+.|+++. ..+ ....|
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r 60 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKAS--------------------------ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPAR 60 (210)
T ss_dssp CSEEEECTTSCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTT
T ss_pred CCcEEEcCCCCEEEEeeCC--------------------------CccCCCEEEEEECCCCCeEEEEEccccccCCcccc
Confidence 6678899999999999999 7777889998832 221 11356
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEccCC
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~~g 255 (516)
+.+...+....|.|.+++.+|+|.|.|.+.+..+.... .+.+.. ..+.. .....|..+.+.|.+ .|
T Consensus 61 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~---~g 137 (210)
T 1lk3_L 61 FSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLM---NN 137 (210)
T ss_dssp EEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEE---EE
T ss_pred EEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEE---Ee
Confidence 66665566779999999999999999999987654321 222221 11111 113368899999998 44
Q ss_pred -CCCc-eeccccccc----c-eEEE--EEecc-----eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 256 -TEKP-KISLDALIG----K-RIKE--FVTST-----TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 256 -~p~p-~i~W~~~~~----~-~~~~--~~~~~-----~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|++ .+.|.+... . .... ..... ...|.|..+..+|+|.|+|.|.|......
T Consensus 138 ~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 138 FYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp EBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred EeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence 3443 899965211 1 0100 00111 23789999999999999999999866543
No 284
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.40 E-value=8.5e-12 Score=116.75 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=89.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~ 354 (516)
....|.|.+++.+|+|.|+|.+.|..+. ......|.|...+..+.. .. +.++.......+
T Consensus 77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~-~~------------~~~~~~~~~~~v---- 139 (259)
T 3omz_A 77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADD-AK------------KDAAKKDGAQKV---- 139 (259)
T ss_dssp CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-------------------------------CEE----
T ss_pred CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccc-cc------------cccccccCCeee----
Confidence 4568999999999999999999987652 333456666654322210 00 000000000000
Q ss_pred ccccccccccEEEEcCCeEEEEEEEeee-cCCceEEEECCe--ec------------CCCCceEEE--EcCCeEEEEEcC
Q psy7039 355 KITSDLSIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGD--EV------------SPDGRIKFE--TSENQTIYRNKS 417 (516)
Q Consensus 355 ~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~--~l------------~~~~~~~~~--~~~~~~~l~i~~ 417 (516)
...+....+.+|+.+.|.|.+.+. +.+.+.|++... .+ ....++.+. .......|+|.+
T Consensus 140 ----~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 215 (259)
T 3omz_A 140 ----TQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA 215 (259)
T ss_dssp ----ECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred ----EEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence 023355788999999999998875 778999998532 10 012344443 223445799999
Q ss_pred ceecCCceEEEEEEEcCCCc-----eeEEEEEEEecCCCC
Q psy7039 418 AKRATDSGSYTIQLVNTVGS-----DSASCKVYVVDKPSP 452 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~-----~s~s~~l~v~~~p~~ 452 (516)
+.. .|+|.|.|.+.+..+. -..-..|.|...+.+
T Consensus 216 v~~-~DsG~Y~C~~~~~~~~~~~~~fg~GT~l~v~~~~~~ 254 (259)
T 3omz_A 216 LQL-EDSAKYFCALGESLTRADKLIFGKGTRVTVEPRSQH 254 (259)
T ss_dssp CCG-GGCSEEEEEEESCSSTTCCCEECCCEEEEEEC----
T ss_pred CCh-hHCEEEEEEEeCccCCCCceEECCCCEEEEeeCccc
Confidence 999 9999999999864221 122256777655443
No 285
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.40 E-value=2.7e-13 Score=122.82 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-------------------cceEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. ..++.+........|.|.+++.+|+|.|+
T Consensus 9 ~~v~~G~~v~L~C~~---~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 9 ASVTVGETVKITCSG---DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp EEEETTSCCCEEEEE---TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred EEEeCCCcEEEEEec---CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 346789999999996 67777889995421 12333344456679999999999999999
Q ss_pred EEEEecCC-C--cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeE
Q psy7039 297 IEAKNDYG-I--DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373 (516)
Q Consensus 297 c~a~n~~g-~--~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~ 373 (516)
|.|.|..+ . ......+.|...+..+.. +.+ ......+..|+.+
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~-v~~---------------------------------~~~~~~~~~g~~v 131 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPK-VTV---------------------------------FPPSPEELRTNKA 131 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCE-EEC---------------------------------CCCCHHHHHTTEE
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCE-EEe---------------------------------eCCchHhccCCce
Confidence 99997322 1 122345566443321110 000 0011123468899
Q ss_pred EEEEEEeee-cC-CceEEEECCeecCCCCceE-EEEcCC----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 374 TITVPFSGR-PK-PTPIWTVNGDEVSPDGRIK-FETSEN----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 374 ~l~C~~~g~-p~-~~i~W~~~~~~l~~~~~~~-~~~~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.|.+.|. |. +.+.|++++..+....... .....+ .+.|.|.++.. +|.|.|+|.|.|..+.
T Consensus 132 ~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 132 TLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQW-KSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHH-HTCSCEEEEEECTTTT
T ss_pred EEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhc-CCCCeEEEEEEeCCce
Confidence 999999988 44 6999999998775432110 000010 24588999999 9999999999999875
No 286
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=99.40 E-value=1.2e-11 Score=112.06 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=72.8
Q ss_pred CCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEE-ee----------cCCcEEEeCCCcCC
Q psy7039 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVV-VP----------AGETSCTVPGLIEG 80 (516)
Q Consensus 14 p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~-~~----------~~~~~~~i~~l~~~ 80 (516)
|.||.++++..+++++|.|+|.+|..+ ++++.+|.|+|+..+ +.|..... .+ ....++.|.+|.++
T Consensus 2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 80 (214)
T 2ibg_A 2 TYPPTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ 80 (214)
T ss_dssp CCCCCCCEEEEEETTEEEEEEEEECCS-SCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred CCCCCCCEeeEecCCEEEEEEECCCCC-CCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence 568888889999999999999998644 468999999999854 37876542 11 34678899999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCCcceE
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~~~~~ 106 (516)
+.|.|+|+|.|..|.+..+.....+.
T Consensus 81 t~Y~~~V~A~n~~g~~~~s~~s~~~~ 106 (214)
T 2ibg_A 81 HTYRFRILAVYSNNDNKESNTSAKFY 106 (214)
T ss_dssp CEEEEEEEEEETTSCEEECCCCCCEE
T ss_pred CEEEEEEEEEecCCCCCCCCCcccEE
Confidence 99999999999998876665444443
No 287
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.40 E-value=8.3e-13 Score=104.77 Aligned_cols=89 Identities=29% Similarity=0.437 Sum_probs=75.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEE-eecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV-VPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
++|++|.+|.+.. ..+++.|+|.+|. +++++|.+|.|+|+..++.|..... .....+++++.+|.++..|.|||.|.
T Consensus 6 ep~~pP~~l~v~~-~~~sv~L~W~pP~-~~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~ 83 (108)
T 1v5j_A 6 SGLSPPRGLVAVR-TPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF 83 (108)
T ss_dssp CCCCCCEEEEEEE-CSSSEEEEEECCS-CCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred CCCCCCcceEEEE-eCCEEEEEECCCC-CCCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 4569999999975 5788999999996 5788999999999995558987654 34678999999999999999999999
Q ss_pred cCCCCCCCCCCC
Q psy7039 91 NAAGPGEASKPT 102 (516)
Q Consensus 91 n~~g~~~~s~~~ 102 (516)
|..|.+.++...
T Consensus 84 n~~G~s~pS~~~ 95 (108)
T 1v5j_A 84 AGSFVSDPSNTA 95 (108)
T ss_dssp ETTEEEEECSCC
T ss_pred cCCCCcCCCCCE
Confidence 999998877543
No 288
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.40 E-value=1.9e-12 Score=118.58 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=101.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeec---------cCCce-
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQ---------IGGRA- 187 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~---------~~~~~- 187 (516)
..+..+.+.+|+.+.|.|.+. +.+. +.+.|++++.... ....+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 58 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPT--------------------------GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQ 58 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCB--------------------------SCCSEEEEEEEEECTTCCCCEEEEEEEETTEEE
T ss_pred cCCCcEEEEcCCCEEEecccC--------------------------CCCCceEEEEEEeCCCceeEEEEeccccCCccc
Confidence 456678899999999999999 7774 8999997543311 11111
Q ss_pred -EEe----------ecCCeeEEEeccCCCCCCeeEEEEEEcCC-CceEEEEEeecee------ee----eccccCCceE-
Q psy7039 188 -DVQ----------TTKSETVLDIPFCSRSDTGHYSLTLENNL-GTATASAHVTGTE------FT----DNNVHEGKAY- 244 (516)
Q Consensus 188 -~~~----------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~~~~~~~~~~~------~~----~~~l~~g~~~- 244 (516)
++. .. ....|.|.+++.+|+|.|+|.+.+.. +.......+.+.. +. ...+..|...
T Consensus 59 ~r~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~ 137 (231)
T 2pet_A 59 VTMHDTRGRSPPYQLD-SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQE 137 (231)
T ss_dssp EEECCCSCCSSCCEEC-TTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEE
T ss_pred cccccccccccccccC-CCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceE
Confidence 111 11 12349999999999999999999886 5555444333221 11 1224578777
Q ss_pred EEEEEEEccCCCCCceecccccc-----c----ceEEEEEe---cc------eeeEEEccCCCCCceEEEEEEEec
Q psy7039 245 EYRVSAVNAAGTEKPKISLDALI-----G----KRIKEFVT---ST------TASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 245 ~~~~~~~~~~g~p~p~i~W~~~~-----~----~~~~~~~~---~~------~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
.+.|.+. .|.|.|.+.|.+.. . .+..+... .. ...|.|.....+|.|.|+|.|.|.
T Consensus 138 ~l~C~~~--~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 138 IATCNSR--NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp EEEEEEE--EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred EEEEEeE--CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 9999873 56789999996511 1 12222110 11 156788766666799999999994
No 289
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.39 E-value=4.1e-12 Score=112.74 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=100.5
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|. |... ....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 54 ~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~---~~~~l~V~---~~p~~~-~~~~~~~~~~g~~v~l~C~~~-------- 117 (190)
T 2wv3_A 54 SNMEYRINKPRAEDSGEYHCVYHFV-SAPK---ANATIEVK---AAPDIT-GHKRSENKNEGQDAMMYCKSV-------- 117 (190)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEEET-TEEE---EEEEEEEE---CCCEEE-EECSEEEEETTSCEEEEEEEE--------
T ss_pred ccEEEEEecCCcccCEEEEEEEEeC-Cccc---ccEEEEEe---cCCccc-ccCCcceeeCCCcEEEEEEeC--------
Confidence 3578999999999999999999987 4321 12222222 357666 455667899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEee--CCeeec---cCCceEEeecCCeeEEEeccCC-CCCCeeEEEEEEcCCCc
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSI--NGQVCQ---IGGRADVQTTKSETVLDIPFCS-RSDTGHYSLTLENNLGT 221 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~c~~~~~~g~ 221 (516)
|.|.+.+.|++ ++..+. ...++.+...+....|.|.+++ .+|+|.|+|.+.|..|.
T Consensus 118 ------------------g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~ 179 (190)
T 2wv3_A 118 ------------------GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179 (190)
T ss_dssp ------------------CSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCE
T ss_pred ------------------ccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCc
Confidence 99999999999 777664 4567777777777899999999 79999999999999998
Q ss_pred eEEEEEe
Q psy7039 222 ATASAHV 228 (516)
Q Consensus 222 ~~~~~~~ 228 (516)
......+
T Consensus 180 ~~~~~~l 186 (190)
T 2wv3_A 180 ASVSTVL 186 (190)
T ss_dssp EEEEEEE
T ss_pred ceeEEEE
Confidence 7766544
No 290
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.39 E-value=5.8e-12 Score=117.56 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=109.0
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~ 190 (516)
.+|.|. ..+. ..+.+|++++|.|.+. + +.+.+.|++++..+...... ...
T Consensus 6 ~kP~i~-~~P~-~~V~~G~~VtL~C~~~--------------------------~-~~~~~~W~k~g~~~~~~~~~~~~~ 56 (257)
T 1b6u_A 6 RKPSLL-AHPG-PLVKSEETVILQCWSD--------------------------V-RFQHFLLHREGKFKDTLHLIGEHH 56 (257)
T ss_dssp CCCEEC-CBSC-SEEESSCCEEEEEEES--------------------------S-CCSEEEEEEESTTCEEEEEECBCC
T ss_pred CCCEEE-EcCC-CEecCCCCEEEEEecC--------------------------C-CCcEEEEEECCCCCCcceeeeecc
Confidence 356665 3333 6788999999999987 4 35689999987654321100 001
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC-------ceEEEEEeec----eeee---eccccCCceEEEEEEEEccCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG-------TATASAHVTG----TEFT---DNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-------~~~~~~~~~~----~~~~---~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.......|.|.+++.+|+|.|+|.+.+..+ .....+.+.. ..+. ...+.+|+.+.|.|.+ .+.
T Consensus 57 ~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~---~~~ 133 (257)
T 1b6u_A 57 DGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS---RSS 133 (257)
T ss_dssp TTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC---SSC
T ss_pred CCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC---CCC
Confidence 123457899999999999999999986421 1122233321 1111 2357889999999997 554
Q ss_pred CCceecccccccceEE----EEE--ecceeeEEEccCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCC
Q psy7039 257 EKPKISLDALIGKRIK----EFV--TSTTASLNIKNSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPG 319 (516)
Q Consensus 257 p~p~i~W~~~~~~~~~----~~~--~~~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~ 319 (516)
.+.+.|.+....... ... ......|.|.+++ |+|.|+|.|.+... ..+..+.|.|...|.
T Consensus 134 -~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 134 -YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp -CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred -CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 468888653221110 000 1236789999998 99999999997532 223456677766543
No 291
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.39 E-value=1.1e-11 Score=111.23 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=101.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCce-EEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-DVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-~~~ 190 (516)
.+|.|. ..+. ..+.+|+.++|.|.+. + +.+.+.|++++..+....+. ...
T Consensus 7 ~~P~i~-~~p~-~~v~~G~~v~L~C~~~--------------------------~-~~~~~~w~k~g~~~~~~~~~~~~~ 57 (201)
T 1nkr_A 7 RKPSLL-AHPG-PLVKSEETVILQCWSD--------------------------V-MFEHFLLHREGMFNDTLRLIGEHH 57 (201)
T ss_dssp CCCEEE-EESC-SEEETTCCEEEEEEES--------------------------S-CCSEEEEEEESSSCEEEEEECEEE
T ss_pred CCCeEE-EEcC-CccCCCCcEEEEEecc--------------------------C-CCCEEEEEECCCcCCcceeeeecC
Confidence 356555 2233 6788999999999987 4 56789999988755421111 111
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec----eee---eeccccCCceEEEEEEEEccCCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG----TEF---TDNNVHEGKAYEYRVSAVNAAGT 256 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~----~~~---~~~~l~~g~~~~~~~~~~~~~g~ 256 (516)
.......|.|.+++.+|+|.|+|.+.+... . ....+.+.. ..+ ....+.+|+.+.|.|.+ .+
T Consensus 58 ~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~---~~- 133 (201)
T 1nkr_A 58 DGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS---RS- 133 (201)
T ss_dssp TTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE---SS-
T ss_pred CCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC---CC-
Confidence 123457899999999999999999986421 1 122233221 111 12357899999999998 44
Q ss_pred CCceecccccccceE----EEEEe--cceeeEEEccCCCCCceEEEEEEEec
Q psy7039 257 EKPKISLDALIGKRI----KEFVT--STTASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 257 p~p~i~W~~~~~~~~----~~~~~--~~~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
+.+.+.|.+...... ..... .....|.|.+++ |+|.|+|.|.+.
T Consensus 134 ~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 134 SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 467888965322111 01111 126789999998 999999999865
No 292
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=105.86 Aligned_cols=96 Identities=25% Similarity=0.408 Sum_probs=82.9
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.++++++.|++|.+|++..++.++|.|+|.+|..+ +.|.+|+|+|+..+. .|..........+.++|.+|++++
T Consensus 7 ~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 84 (118)
T 2yrz_A 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNH 84 (118)
T ss_dssp SCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS--SCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTC
T ss_pred CcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC--CCccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCC
Confidence 45678899999999999999999999999999998644 379999999998665 676665555678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 85 ~Y~~~V~A~n~~G~g~~S~ 103 (118)
T 2yrz_A 85 SYVFRVRAQSQEGWGRERE 103 (118)
T ss_dssp EEEEEEEEEESSCEEEEEE
T ss_pred EEEEEEEEEcCCcCCCCcC
Confidence 9999999999999887654
No 293
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.39 E-value=1e-11 Score=116.60 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=106.8
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC------ceeeEEeeC--Ceeec--------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP------FLNHGWSIN--GQVCQ-------- 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~i~W~~~--~~~~~-------- 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++. +..+.
T Consensus 10 q~p~~v~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~ 63 (264)
T 2gjj_A 10 QTPSSLPVSVGEKVTMTCKSS--------------------------QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFT 63 (264)
T ss_dssp EECSEEEEETTCCEEEEEEES--------------------------SCCEETTTTEECEEEEEECTTSCCEEEEETTTE
T ss_pred ecCCeEEecCCCcEEEEeEcC--------------------------CcccccccCCceEEEEEECCCCCcEEEEEeccc
Confidence 456678899999999999998 666 678889874 22110
Q ss_pred ----cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeece---------------------ee-
Q psy7039 183 ----IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTGT---------------------EF- 233 (516)
Q Consensus 183 ----~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~~---------------------~~- 233 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+... .+
T Consensus 64 ~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (264)
T 2gjj_A 64 RKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQ 143 (264)
T ss_dssp ECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEE
T ss_pred CCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEe
Confidence 13567666555677999999999999999999988643211 12222111 11
Q ss_pred --eeccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEE--ecceeeEE
Q psy7039 234 --TDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFV--TSTTASLN 283 (516)
Q Consensus 234 --~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~--~~~~~~l~ 283 (516)
....+.+|+.+.|.|.+ .+.+ .+.+.|.+.. +. ++.+.. ......|.
T Consensus 144 ~~~~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 220 (264)
T 2gjj_A 144 QSGPEVVKTGASVKISCKA---SGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQ 220 (264)
T ss_dssp ECCCEEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEcCCCcEEEEEEE---eCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEE
Confidence 11247789999999998 4554 3789996531 11 111111 12356899
Q ss_pred EccCCCCCceEEEEEEEec
Q psy7039 284 IKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~ 302 (516)
|.+++.+|+|.|+|.+.|.
T Consensus 221 I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 221 LNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp ECSCCGGGCEEEEEEEECS
T ss_pred ECcCCcccCEEEEEEEecC
Confidence 9999999999999999985
No 294
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.39 E-value=2.8e-12 Score=116.97 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=108.8
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------------ceEEEEEe--cceeeEEEc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-------------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-------------------------~~~~~~~~--~~~~~l~i~ 285 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 10 GLVQSGGSLRLSCAT---SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp CEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eeEcCCCEEEEEEEe---cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 456789999999998 4443 6788996421 1 12222221 235689999
Q ss_pred cCCCCCceEEEEEEEecCC-----CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYG-----IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
+++.+|+|.|.|.+.|..+ .......|.|...+.. .|.... .
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~-------------------- 133 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTT--PPSVYP-----------L-------------------- 133 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCB--CCEEEE-----------E--------------------
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCC--CCeEEE-----------c--------------------
Confidence 9999999999999998764 2223456666543211 110000 0
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCC
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTV 435 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~ 435 (516)
.....+..|+.+.|.|.+.|. |.| .+.|++++..+...........+ ..+.|.|..+.. .| |.|+|.|.|..
T Consensus 134 -~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d-g~y~C~a~n~~ 210 (222)
T 1q9r_B 134 -APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPA 210 (222)
T ss_dssp -CCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGG
T ss_pred -cccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhc-CC-CeEEEEEEccC
Confidence 001123578999999999986 888 99999998765321110111111 124689988888 88 99999999999
Q ss_pred CceeEEEEE
Q psy7039 436 GSDSASCKV 444 (516)
Q Consensus 436 G~~s~s~~l 444 (516)
|.......+
T Consensus 211 ~~~~~~~~i 219 (222)
T 1q9r_B 211 SSTKVDKKI 219 (222)
T ss_dssp GTEEEEEEC
T ss_pred CCCcEEEec
Confidence 986655444
No 295
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.38 E-value=1.7e-12 Score=117.62 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=106.2
Q ss_pred cccCCceEEEEEEEEccC----CCCCceeccccccc----------------------ceEEEEE--ecceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAA----GTEKPKISLDALIG----------------------KRIKEFV--TSTTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~----g~p~p~i~W~~~~~----------------------~~~~~~~--~~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+.... +.+.+.+.|.+... .++.+.. ......|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 90 (214)
T 2zg1_A 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR 90 (214)
T ss_dssp EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence 456799999999874221 23577899965211 1222211 1234589999999
Q ss_pred CCCceEEEEEEEecCCCc----ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 289 RKDSGIYKIEAKNDYGID----MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~----~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
.+|+|.|.|.+.+..+.. ...+.|.|...+..|.. . .+.
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i--~----------------------------------~~~- 133 (214)
T 2zg1_A 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDI--H----------------------------------FLE- 133 (214)
T ss_dssp GGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEE--C------------------------------------C-
T ss_pred HhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCce--e----------------------------------cCc-
Confidence 999999999999875321 24677777765543311 0 001
Q ss_pred EEEEcCCeEEEEEEEeee----cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPFSGR----PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~----p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+|+.+.|.|.+.+. |.|.+.|++++...... .. .....|.|..+.. +|.|.|+|.|.|..+..+.
T Consensus 134 -~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~-~~~g~Y~C~a~n~~~~~~~ 205 (214)
T 2zg1_A 134 -PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPE-DHGTNLTCQMKRQGAQVTT 205 (214)
T ss_dssp -CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTT-CCSCEEEEEEECC----CC
T ss_pred -cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccH-HcCcEEEEEEEeCCCCcce
Confidence 14589999999999764 78899999998654221 11 2335799999988 9999999999998765444
Q ss_pred EEEE
Q psy7039 441 SCKV 444 (516)
Q Consensus 441 s~~l 444 (516)
+..+
T Consensus 206 ~~~v 209 (214)
T 2zg1_A 206 ERTV 209 (214)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 3333
No 296
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.38 E-value=6.6e-12 Score=114.22 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=102.4
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|+++ +..+.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~ 59 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKAS--------------------------GYMFTNYGMNWVKQAPGKALKLMGWINPYTGEST 59 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEE--------------------------SSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEE
T ss_pred CCCCeEecCCCcEEEEEEEe--------------------------CcccccceEEEEEeCCCCCcEEEEEEecCCCceE
Confidence 34557889999999999998 654 577888875 32221
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce------EEEEEeec-----eeee----eccccCC
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA------TASAHVTG-----TEFT----DNNVHEG 241 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~------~~~~~~~~-----~~~~----~~~l~~g 241 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. ...+..|
T Consensus 60 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g 139 (219)
T 1c1e_H 60 FADDFKGRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTN 139 (219)
T ss_dssp ECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCS
T ss_pred eCcccCCcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccC
Confidence 1245555432 346799999999999999999999875311 11222221 1111 1235679
Q ss_pred ceEEEEEEEEccCC-CCCc-eecccccccc--eEEE--EEec----ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 242 KAYEYRVSAVNAAG-TEKP-KISLDALIGK--RIKE--FVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 242 ~~~~~~~~~~~~~g-~p~p-~i~W~~~~~~--~~~~--~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
..+.|.|.+ .| .|.| .+.|.+.... .... .... ....|.|... ..|.|.|+|.|.|..+.....
T Consensus 140 ~~v~L~C~~---~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~d~g~Y~C~a~n~~~~~~~~ 213 (219)
T 1c1e_H 140 SMVTLGCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSS-PRPSETVTCNVAHPASSTKVD 213 (219)
T ss_dssp SEEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESS-STTTSCCEEEEEEGGGTEEEE
T ss_pred CeEEEEEEc---ccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecc-cCCCCEEEEEEEeCCCCccEE
Confidence 999999998 55 7888 9999763221 0000 0011 1236788444 446699999999988765433
No 297
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.38 E-value=6.8e-12 Score=113.51 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=93.6
Q ss_pred CcEEEeCCCcC-CCeEEEEEEEecCCCCCCCCCCCcceEeccC--CCCCccccCcccceEEecCCeEEEEEeeeeccccc
Q psy7039 69 ETSCTVPGLIE-GETYQFQVRAVNAAGPGEASKPTAPIVAKPK--NLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145 (516)
Q Consensus 69 ~~~~~i~~l~~-~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~--~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~ 145 (516)
...|.|.+++. .|.|.|+|.|.|..|........+.+..... ...|.+. ..+....+.+|+.+.|.|.+.
T Consensus 63 ~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~------ 135 (212)
T 2yd1_A 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAI------ 135 (212)
T ss_dssp EEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEE------
T ss_pred eEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEec------
Confidence 36899999999 9999999999998765221112222222111 1225555 455667889999999999999
Q ss_pred cCccccccccccCccceeecCcCceeeEEeeCCeeeccC-CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE
Q psy7039 146 KSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA 224 (516)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~ 224 (516)
+.|.+.+.|++++..+... .++.+. ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus 136 --------------------g~p~p~i~W~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s 191 (212)
T 2yd1_A 136 --------------------GNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHS 191 (212)
T ss_dssp --------------------CSSCCEEEEEETTEECCTTSTTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred --------------------cCCCCeEEEEECCeEcccCCCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeE
Confidence 9999999999999988753 344332 238999999999999999999999887653
No 298
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.38 E-value=5.3e-12 Score=115.51 Aligned_cols=183 Identities=12% Similarity=0.056 Sum_probs=119.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccC------CceEEee---
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG------GRADVQT--- 191 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~--- 191 (516)
.+.+.+.+|+++.|.|.+. +......+.+.|++ ..+...+.|+.++..+... .|.....
T Consensus 11 ~~pV~v~~G~~v~L~C~v~-----------~~~~~~~~~V~W~k-~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~ 78 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLF-----------PTMSAETMELKWVS-SSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78 (226)
T ss_dssp SSCEEEETTSCEEEEEEEE-----------SCCCCTTSEEEEEE-TTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTG
T ss_pred CCCEEEEcCCcEEEEEEEE-----------CCCCCCceEEEEEE-CCCCceEEEEeCCeEcccccCccccceEEEecccc
Confidence 3457889999999999987 11122334577776 4455566777777665432 2333222
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeecee-----eeeccccCCceEEEEEEEEccCCCCCceeccccc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-----FTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDAL 266 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~-----~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~ 266 (516)
..+..+|.|.+++.+|+|.|+|.+.|..|.....+.+.... .....+.+|....+.|.+. .+.|.|.++|.+.
T Consensus 79 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~--g~~P~p~i~W~k~ 156 (226)
T 4f80_A 79 TAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRST--GWYPQPQIQWSNN 156 (226)
T ss_dssp GGTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEE--EEBSCCEEEEECT
T ss_pred cCCeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEec--cCCCCCEEEEEEC
Confidence 23467999999999999999999999888776665443322 1234556789999999882 3369999999653
Q ss_pred ccceE-----EEEEec--ceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecC
Q psy7039 267 IGKRI-----KEFVTS--TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317 (516)
Q Consensus 267 ~~~~~-----~~~~~~--~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~ 317 (516)
.+... ...... ....+.+..++.+|.|.|+|.|.|..|..+.++.|.|..+
T Consensus 157 ~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 157 KGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp TSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred CceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 22111 111111 1123445567889999999999999999888888887553
No 299
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.38 E-value=2.4e-12 Score=116.96 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=104.5
Q ss_pred cccCCceEEEEEEEEccCCCCCc---eecccccccceEEEEE----------------------------ecceeeEEEc
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP---KISLDALIGKRIKEFV----------------------------TSTTASLNIK 285 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p---~i~W~~~~~~~~~~~~----------------------------~~~~~~l~i~ 285 (516)
....|+.+.|.|.+ .|.+.+ .+.|.+..+....... .....+|.|.
T Consensus 12 ~~~~G~~v~L~C~~---~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 12 RGRLGGTVELPCHL---LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp EEETTSCEEECCEE---CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred EEecCCCEEEEEEE---ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 34579999999998 565555 4789764332221110 2235679999
Q ss_pred cCCCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+++.+|+|.|+|.|.|..+..... ..+.+...|.... ....
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~ 130 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHA--------------------------------------EAQE 130 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE--------------------------------------EECC
T ss_pred cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceee--------------------------------------cccc
Confidence 999999999999999987665433 3333333322110 0111
Q ss_pred EEEEcCCeEEEEEEE-eeecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.....+..+.+.|.+ .+.|++.+.|.+++..+...........+. .+.|.|..+.. +|.|.|+|.|.|..|....
T Consensus 131 ~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~YtC~a~N~~~~~~~ 209 (225)
T 4fmk_A 131 VTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGR-ADGVKVTCRVEHESFEEPI 209 (225)
T ss_dssp BCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGG-GTTCEEEEEEECTTCSSCE
T ss_pred eeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCH-HHCCEEEEEEEcCCCCeEE
Confidence 223345566666655 567778999998875432211111111111 24699999999 9999999999999988655
Q ss_pred EEEEEE
Q psy7039 441 SCKVYV 446 (516)
Q Consensus 441 s~~l~v 446 (516)
+..+++
T Consensus 210 ~~~v~l 215 (225)
T 4fmk_A 210 LLPVTL 215 (225)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 544443
No 300
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-12 Score=104.82 Aligned_cols=96 Identities=33% Similarity=0.558 Sum_probs=81.9
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
...++|++|.++++..++.+++.|+|.+|..+++++|.+|.|+++..+. .|..+.. ....++++|.+|.++..|.|+|
T Consensus 13 ~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~~v~~L~p~t~Y~frV 91 (120)
T 2yux_A 13 QIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE-HYHRTSATITELVIGNEYYFRV 91 (120)
T ss_dssp CCCCCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEES-SCCSSCCEECCCCSSEEEEEEE
T ss_pred EeecCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeee-cCCcCEEEECCCCCCCEEEEEE
Confidence 3457999999999999999999999999977777899999999998665 8876643 3468889999999999999999
Q ss_pred EEecCCCCCCCCCCCcce
Q psy7039 88 RAVNAAGPGEASKPTAPI 105 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~ 105 (516)
+|.|..|.+.++..+..+
T Consensus 92 ~A~n~~G~s~~S~~s~~~ 109 (120)
T 2yux_A 92 FSENMCGLSEDATMTKES 109 (120)
T ss_dssp CCCSSSCSCSSCEECSSC
T ss_pred EEeeCCcCCCCccCcCCc
Confidence 999999999887654333
No 301
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.37 E-value=1.2e-10 Score=112.77 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=135.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCCeeeccCCceEEeecCCeeEE
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSINGQVCQIGGRADVQTTKSETVL 198 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l 198 (516)
+...+.+..|+.++|.|.+. +.+ .+.|.|++++..+... ..... .....|
T Consensus 12 p~~~v~~~~G~~v~l~C~~~--------------------------~~~~~~~i~W~~~~~~~~~~-~~~~~--~~~~~L 62 (325)
T 1n26_A 12 ARGVLTSLPGDSVTLTCPGV--------------------------EPEDNATVHWVLRKPAAGSH-PSRWA--GMGRRL 62 (325)
T ss_dssp CTTEEEECTTCCEEEECTTS--------------------------CTTCCSEEEEEEECSSSSCC-CEEEE--EESSEE
T ss_pred CCCcEECCCCCcEEEEeCCC--------------------------CCCCCceEEEEECCccCCcc-ccccc--cccceE
Confidence 34445557999999999988 654 7899999987655211 11222 223689
Q ss_pred EeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeeeeccccCCceEEEEEEEEccCCCCCceecccc-------------
Q psy7039 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDA------------- 265 (516)
Q Consensus 199 ~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~------------- 265 (516)
.|.+++..|+|.|+|.. .|.......+.+.. .++... +.|.+. .......+.|..
T Consensus 63 ~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~~------pP~~P~-l~c~~~--~~~~~~~c~W~~~~~~~~~~~y~l~ 130 (325)
T 1n26_A 63 LLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDV------PPEEPQ-LSCFRK--SPLSNVVCEWGPRSTPSLTTKAVLL 130 (325)
T ss_dssp EECSCCGGGCEEEEEES---SSSCSCEEEEEECC------CCCCCC-CEEEBS--STTSCEEEEECCSSCCCTTCEEEEE
T ss_pred EecccchhhCeEeEEEe---CCEEeeeEEEEecc------CCCCCc-eeEEee--cCCCcEEEEECCCCCCCCCceEEEE
Confidence 99999999999999993 45444333332221 122222 333320 001122333321
Q ss_pred ---cc---cceEEEEE----ecceeeEEEccCC-CCCceEEEEEEEecCCCcce-eEEEEE--ecCCCCCCCCceeeecc
Q psy7039 266 ---LI---GKRIKEFV----TSTTASLNIKNSV-RKDSGIYKIEAKNDYGIDMA-DIEVVV--VSKPGPPTGPIDYTTVT 331 (516)
Q Consensus 266 ---~~---~~~~~~~~----~~~~~~l~i~~l~-~~d~g~y~c~a~n~~g~~~~-~~~l~v--~~~p~~p~~p~~~~~~~ 331 (516)
.. ........ ......+.|..+. ....|.|+|.|.|..|.... ...+.. ...|.+|.. +.+..+.
T Consensus 131 ~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~-l~v~~~~ 209 (325)
T 1n26_A 131 VRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN-ITVTAVA 209 (325)
T ss_dssp EEEESSSSCEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEE-EEEEECT
T ss_pred EEEccCCCCCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcc-eEEEEec
Confidence 00 00000011 1234566777765 56889999999999987532 222222 123333322 5666654
Q ss_pred --CCeeEEEecCCCCC-CCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEc
Q psy7039 332 --PESVSMSWKPPVDD-GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETS 407 (516)
Q Consensus 332 --~~~~~l~W~~p~~~-~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~ 407 (516)
..++.|+|++|... .+..+.+|. |.|...+. .... ....
T Consensus 210 ~~~~sv~lsW~~p~~~~~~~~~~~Y~--------------------------------V~yr~~~~-----~~W~~~~~~ 252 (325)
T 1n26_A 210 RNPRWLSVTWQDPHSWNSSFYRLRFE--------------------------------LRYRAERS-----KTFTTWMVK 252 (325)
T ss_dssp TCTTCEEEEEECCTTCCCSSSCEEEE--------------------------------EEEEETTC-----SCCEEEECG
T ss_pred CCCCEEEEEECCCCccCCCcEeEEEE--------------------------------EEEEeCCC-----CCCEEEccc
Confidence 36999999998763 344455552 12222110 0111 1111
Q ss_pred CCeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 408 ~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.....+.|.+|.+ ...|.++++|.|..|.
T Consensus 253 ~~~~~~~l~~L~p-~t~Y~~rVrA~n~~g~ 281 (325)
T 1n26_A 253 DLQHHCVIHDAWS-GLRHVVQLRAQEEFGQ 281 (325)
T ss_dssp GGCSEEEESSCCT-TCCEEEEEEEEETTTB
T ss_pred CCceEEEEeCCCC-CCeEEEEEEEecCCCC
Confidence 2234688999999 9999999999998775
No 302
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.37 E-value=5.8e-12 Score=117.72 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=113.5
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-c-------------------ceEEE--EEecceeeEEEccCCCCCce
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-G-------------------KRIKE--FVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~-------------------~~~~~--~~~~~~~~l~i~~l~~~d~g 293 (516)
..+.+|+.+.|.|.+ .+.+.+.+.|.+.. + .++.+ ........|.|.+++.+|+|
T Consensus 13 ~~v~~G~~v~L~C~~---~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG 89 (256)
T 3tf7_C 13 VTVSEGASLQLRCKY---SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA 89 (256)
T ss_dssp EEEETTSCEEECCEE---ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred EEecCCCeEEEEEEe---CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence 356789999999998 56688999996521 1 11111 11244668999999999999
Q ss_pred EEEEEEEecCCCc----ceeEEEEEecCC--------------CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 294 IYKIEAKNDYGID----MADIEVVVVSKP--------------GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 294 ~y~c~a~n~~g~~----~~~~~l~v~~~p--------------~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
.|+|.+.|..+.. .....|.|.... ..+.. ..+.
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~-~~v~--------------------------- 141 (256)
T 3tf7_C 90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE-AAVT--------------------------- 141 (256)
T ss_dssp EEEEEEECTTCTTCEEECCCEEEEEEC----------------------CCEE---------------------------
T ss_pred EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCc-cEEE---------------------------
Confidence 9999999876532 223456665410 00000 0000
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCee--c---------------CCCCceEEEE-cCCeEEEEEcC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--V---------------SPDGRIKFET-SENQTIYRNKS 417 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~--l---------------~~~~~~~~~~-~~~~~~l~i~~ 417 (516)
..+....+.+|+.++|.|.+.+. .+.+.|++.... . ....++.... ......|.|.+
T Consensus 142 ----~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 216 (256)
T 3tf7_C 142 ----QSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLES 216 (256)
T ss_dssp ----ESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESS
T ss_pred ----ecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECC
Confidence 12345677899999999999877 678999984311 0 0123344332 23445799999
Q ss_pred ceecCCceEEEEEEEcCCCce--eEEEEEEEec
Q psy7039 418 AKRATDSGSYTIQLVNTVGSD--SASCKVYVVD 448 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~--s~s~~l~v~~ 448 (516)
+.. .|+|.|+|.|.|..|.. ..-..|.|..
T Consensus 217 v~~-~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 217 ASP-SQTSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp CCG-GGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCH-HHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence 999 99999999999987752 2224566654
No 303
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.37 E-value=3.4e-12 Score=102.34 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
...+|++|..+++..++.++|.|+|.+|..+++.+|.+|.|+|+..+. .|..... ...++++|.+|++++.|.|+|
T Consensus 4 ~~~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV 81 (109)
T 1x5x_A 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD--GEDLAYTVKNLRRSTKYKFKV 81 (109)
T ss_dssp CCCCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEE--ESCSEEEEESCCSSCEEEEEE
T ss_pred CCCCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEe--CCccEEEECCCCCCCEEEEEE
Confidence 346788888888999999999999999976766689999999988654 5655443 357899999999999999999
Q ss_pred EEecCCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKPT 102 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~ 102 (516)
+|.|..|.+.++...
T Consensus 82 ~A~n~~G~s~~S~~~ 96 (109)
T 1x5x_A 82 IAYNSEGKSNPSEVV 96 (109)
T ss_dssp EEECSSCEEEECCCE
T ss_pred EEEeCCCCcCCccCE
Confidence 999999988776543
No 304
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.36 E-value=6.3e-12 Score=111.48 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=92.5
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
.....|.|.+++..|.|.|+|.|.|..|... .....+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 59 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~------- 125 (191)
T 1epf_A 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQS--EATVNVKIF---QKLMFK-NAPTPQEFKEGEDAVIVCDVV------- 125 (191)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTTEEE--EEEEEEEEE---CCSEEE-ECCSSEECCTTSCEEECCEEE-------
T ss_pred CCceEEEEccCCcccCEEEEEEEEcCCCcce--EEEEEEEee---cCceEe-cCCCcEeecCCCeEEEEEEEC-------
Confidence 3567899999999999999999999875221 112222222 355555 455667889999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEeeCCeeeccCC--ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG--RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+.... ++.... ...|.|.+++.+|+|.|+|.+.|..+...
T Consensus 126 -------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 182 (191)
T 1epf_A 126 -------------------SSLPPTIIWKHKGRDVILKKDVRFIVLS---NNYLQIRGIKKTDEGTYRCEGRILARGEI 182 (191)
T ss_dssp -------------------CSSCCEEEEEETTEEGGGGCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEEGGGTEE
T ss_pred -------------------CCCCCEEEEEECCEEeeccCCceEEEec---CCeEEECCCChhhCEEEEEEEEEecceeE
Confidence 99999999999998886433 343332 23799999999999999999999876543
No 305
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1
Probab=99.36 E-value=2.5e-12 Score=103.92 Aligned_cols=93 Identities=24% Similarity=0.388 Sum_probs=72.2
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC-C-CCeEEeEEee-----------cCCcEEEeCCCc
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-T-GNWEKAVVVP-----------AGETSCTVPGLI 78 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~-~-~~~~~~~~~~-----------~~~~~~~i~~l~ 78 (516)
.+|++|. +..+++++|.|+|.+|. ++|++|.+|.|+|++. . +.|..+.... ...++++|.+|.
T Consensus 4 ~pP~~P~---v~~~~~~sv~L~W~~P~-~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~ 79 (115)
T 2ic2_A 4 YPPTPPN---VTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK 79 (115)
T ss_dssp CCCCCCE---EEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred CCCCcCE---eEEEeCCEEEEEEcCCC-CCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence 4577775 77789999999999996 4458999999999987 3 3898776543 234689999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcceEec
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
+++.|.|+|+|.|..|.+.++..+..+..+
T Consensus 80 p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~ 109 (115)
T 2ic2_A 80 PQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109 (115)
T ss_dssp SSEEEEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred CCCEEEEEEEEEeCCCCCCCCCCCCCEEeC
Confidence 999999999999999998888777666654
No 306
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.36 E-value=1.6e-12 Score=113.45 Aligned_cols=152 Identities=12% Similarity=0.022 Sum_probs=97.2
Q ss_pred cceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc------------CCceEE
Q psy7039 122 NDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI------------GGRADV 189 (516)
Q Consensus 122 ~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~------------~~~~~~ 189 (516)
+.+.+.+|+++.|.|.+. + |.+.|.|++++..+.. ..|+.+
T Consensus 3 ~~v~~~~G~~VtL~c~~~--------------------------~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~ 55 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN--------------------------V-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL 55 (171)
T ss_dssp EEEEEETTCCEEECCCCS--------------------------S-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE
T ss_pred cEEEEEcCCCEEEcCCCC--------------------------C-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEE
Confidence 347788999999999886 5 7788999887764321 012222
Q ss_pred eecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeece-eeeeccccCCceEEEEEEEEccCCCCCceeccccccc
Q psy7039 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG 268 (516)
Q Consensus 190 ~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~ 268 (516)
...+.+|.|.+++.+|+|.|.|.+.+..|.....+.+... ......... ....+.|.+ .|.|.|.+.|.+..
T Consensus 56 --~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i~~~~-~~~~L~C~~---~~~p~p~i~W~~~~- 128 (171)
T 1ccz_A 56 --DTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWEC-SNATLTCEV---LEGTDVELKLYQGK- 128 (171)
T ss_dssp --CTTTCCEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEEEEET-TTTEEEEEC---SSCSSCEEEEEETT-
T ss_pred --eCCCCeEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEEEEec-CCcEEEEEe---CCCCCcEEEEEECC-
Confidence 2345689999999999999999999887743333333221 000000111 112678887 77789999996522
Q ss_pred ceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEE
Q psy7039 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312 (516)
Q Consensus 269 ~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l 312 (516)
.... ......+.+. ..+|.|.|+|.|.|..+.....+.|
T Consensus 129 ~~l~---~~~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 129 EHLR---SLRQKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp EEEE---EESSSEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred EECc---CCcceEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence 1111 1222344444 3678899999999999886655544
No 307
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.36 E-value=3.6e-12 Score=115.94 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=105.6
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-----------------------eEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-----------------------RIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-----------------------~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (219)
T 1c1e_H 10 ELKKPGETVKISCKA---SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL 86 (219)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred eEecCCCcEEEEEEE---eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence 356789999999998 5543 6889996531 11 1222111 23568999999
Q ss_pred CCCCceEEEEEEEecCCC----cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI----DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+.+|+|.|+|.+.|..+. ......|.|...+.. .|.... . ..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~---------------------~~ 132 (219)
T 1c1e_H 87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTT--PPSVYP-----------L---------------------AP 132 (219)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCB--CCEEEE-----------E---------------------CC
T ss_pred CcccCEEEEEEEeccCcccceeecCceEEEEecCCCC--CCeEEE-----------e---------------------cC
Confidence 999999999999997632 123456666543211 110000 0 00
Q ss_pred cEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 364 DMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
...+..|+.+.|.|.+.| .|.| .|.|++++..+...........+. .+.|.|.... .|.|.|+|.|.|..|..
T Consensus 133 ~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~--~d~g~Y~C~a~n~~~~~ 210 (219)
T 1c1e_H 133 GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP--RPSETVTCNVAHPASST 210 (219)
T ss_dssp CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSS--TTTSCCEEEEEEGGGTE
T ss_pred ccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEeccc--CCCCEEEEEEEeCCCCc
Confidence 112357999999999998 8888 999999987642110000011111 1468884443 35599999999998876
Q ss_pred eEEEEE
Q psy7039 439 SASCKV 444 (516)
Q Consensus 439 s~s~~l 444 (516)
.....+
T Consensus 211 ~~~~~i 216 (219)
T 1c1e_H 211 KVDKKI 216 (219)
T ss_dssp EEEEEC
T ss_pred cEEEec
Confidence 554443
No 308
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.36 E-value=8.4e-12 Score=111.49 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=115.1
Q ss_pred CCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeE----EeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE----KAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|..+.+ .....+.|.+.... + .+. ...+.|...+.... ...........|.|.+++..|.|.|+|.+.
T Consensus 13 ~~~~~~~v--~~G~~v~L~C~~~~--~-~p~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 86 (201)
T 3s97_C 13 EERPEVRV--KEGKGMVLLCDPPY--H-FPD-DLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVS 86 (201)
T ss_dssp SCCCCEEE--ETTCCEEECCCCCS--E-ESS-CCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred CCCceEEE--ECCCCEEEeccccc--c-CCC-ceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEE
Confidence 34455444 35667888887211 1 111 14455555443110 111222346789999999999999999999
Q ss_pred cCCCCCCCCCCCcceEec----cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC
Q psy7039 91 NAAGPGEASKPTAPIVAK----PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS 166 (516)
Q Consensus 91 n~~g~~~~s~~~~~~~~~----~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (516)
|..+..........+... ....+|.+. .......+.+|+.+.|.|.+. +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------------------------g 139 (201)
T 3s97_C 87 SPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYALMGQNVTLECFAL--------------------------G 139 (201)
T ss_dssp EGGGTEEEECCCEEEEEECCSSCCCEEEEEE-EECCCEEEETTCCEEEEEEEE--------------------------E
T ss_pred ecCCCcchhhcccceeeccccccCCCCCceE-ecCCceEEecCCcEEEEEEcc--------------------------C
Confidence 866543221112211111 112345454 333478899999999999999 8
Q ss_pred cCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 167 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.|.+.+.|++++..+....+ + ......|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 140 ~p~p~v~W~~~~~~~~~~~~--~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 198 (201)
T 3s97_C 140 NPVPDIRWRKVLEPMPSTAE--I--STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198 (201)
T ss_dssp ESCCEEEEEETTBCCCTTCE--E--ETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCceEEEeCCCcCCCcee--e--cCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEE
Confidence 99999999999987764422 2 22345899999999999999999999998876655443
No 309
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=104.62 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=75.5
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeE---EeecCCcEEEeCCCcCCCeEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAV---VVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~---~~~~~~~~~~i~~l~~~~~y~ 84 (516)
..++.|++|.++.+...+++ +.|+|.+|..+++.+|.+|.|+|+..+. .|.... ......++++|.+|++++.|.
T Consensus 3 s~~~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 81 (122)
T 2e3v_A 3 SGSSGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYA 81 (122)
T ss_dssp ---CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEE
T ss_pred CCCcCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEE
Confidence 35788999999999988777 9999999977777779999999998766 784322 122467899999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcc
Q psy7039 85 FQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~ 104 (516)
|+|+|.|..|.+.++.....
T Consensus 82 ~rV~A~n~~G~g~~S~~~~~ 101 (122)
T 2e3v_A 82 VRLAALNGKGLGEISAASEF 101 (122)
T ss_dssp EEEEEEETTEECCCCCCEEE
T ss_pred EEEEEEeCCccCCCcccccc
Confidence 99999999999988765443
No 310
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=99.36 E-value=1.8e-12 Score=103.12 Aligned_cols=92 Identities=26% Similarity=0.429 Sum_probs=76.9
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE---eecCCcEEEeCCCcCCCeEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV---VPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~---~~~~~~~~~i~~l~~~~~y~~ 85 (516)
+++.|++|.++.+....++ +.|+|.+|..++|.+|.+|.|+|+..+. .|..... .....++++|.+|++++.|.|
T Consensus 3 ~~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 81 (105)
T 2haz_A 3 HMDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAV 81 (105)
T ss_dssp CCCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEE
T ss_pred CCCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEE
Confidence 5788999999999988777 9999999977777779999999998776 5754322 122568999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 82 rV~A~n~~G~g~~S~~~ 98 (105)
T 2haz_A 82 RLAALNGKGLGEISAAS 98 (105)
T ss_dssp EEEEEETTEECCCCCCE
T ss_pred EEEEEcCCccCCCcCCE
Confidence 99999999998877654
No 311
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.36 E-value=7.1e-12 Score=113.33 Aligned_cols=156 Identities=9% Similarity=0.046 Sum_probs=103.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC---ceeeEEeeCC--eee------------cc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP---FLNHGWSING--QVC------------QI 183 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~i~W~~~~--~~~------------~~ 183 (516)
+..+.+.+|+.+.|.|.+. +.| .+.+.|++++ ..+ ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 60 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSS--------------------------TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGV 60 (212)
T ss_dssp CSEEEECTTCCEEEEEEES--------------------------SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTC
T ss_pred CCeEeecCCCCEEEEEEec--------------------------ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcc
Confidence 5668899999999999998 665 4678888742 222 11
Q ss_pred CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEee-----ceeeee----ccccCCceEEEEEEEE
Q psy7039 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVT-----GTEFTD----NNVHEGKAYEYRVSAV 251 (516)
Q Consensus 184 ~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~-----~~~~~~----~~l~~g~~~~~~~~~~ 251 (516)
..|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+. ...+.. .....|..+.+.|.+
T Consensus 61 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~- 139 (212)
T 1q0x_L 61 PARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI- 139 (212)
T ss_dssp CTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE-
T ss_pred cccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE-
Confidence 3566665556677999999999999999999998765321 122221 111111 112358899999998
Q ss_pred ccCCC-CCc-eeccccccc---ceEE---EEEec-----ceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 252 NAAGT-EKP-KISLDALIG---KRIK---EFVTS-----TTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 252 ~~~g~-p~p-~i~W~~~~~---~~~~---~~~~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.|. |++ .+.|.+... .... ..... ....|.|.....+|.|.|+|.|.|....
T Consensus 140 --~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 140 --TDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp --EEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred --EEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 443 443 899965211 0010 01111 1246888889899999999999997654
No 312
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.35 E-value=4.4e-12 Score=102.76 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=73.3
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCC---CCc-eeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDG---GSP-ITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~---~~~-i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
...+|++|..+.+..++.++|.|+|.+|..++ +.+ |++|.|+..+... .|..+... ..+.++|.+|++++.|.
T Consensus 12 ~~~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~--~~t~~~v~gL~p~t~Y~ 89 (120)
T 1wfu_A 12 KVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTG--YATRHVVEGLEPRTLYK 89 (120)
T ss_dssp TCCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEE--SCSEEEEESCCTTCEEE
T ss_pred eeCCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecC--CccEEEECCCCCCCEEE
Confidence 34566677777778899999999999997666 666 9999999554343 78776544 56789999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 90 frV~A~n~~G~s~~S~~~ 107 (120)
T 1wfu_A 90 FRLKVTSPSGEYEYSPVV 107 (120)
T ss_dssp EEEEEECSSSCEEECCCE
T ss_pred EEEEEECCCCCCCCCccE
Confidence 999999999998876643
No 313
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.35 E-value=6.1e-12 Score=113.84 Aligned_cols=160 Identities=8% Similarity=0.042 Sum_probs=104.2
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~ 184 (516)
..+..+.+.+|+.+.|.|.+. +.|.+.+.|++.. ... ...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 59 (213)
T 3r06_A 6 QSPSSLPASLGDRVTINCQAS--------------------------QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVP 59 (213)
T ss_dssp EECSEEEECTTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCEEEecCCCcEEEEEEeC--------------------------CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCC
Confidence 345678899999999999999 7788889998732 110 123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----eeee----eccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----TEFT----DNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----~~~~----~~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+. ......|..+.+.|.+
T Consensus 60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~--- 136 (213)
T 3r06_A 60 SRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFV--- 136 (213)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEE---
T ss_pred CcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEE---
Confidence 567666666778999999999999999999988653221 1222210 1111 1123357789999998
Q ss_pred CCCC--Cceeccccccc----ce-EEEE-Eecc------eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 254 AGTE--KPKISLDALIG----KR-IKEF-VTST------TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 254 ~g~p--~p~i~W~~~~~----~~-~~~~-~~~~------~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|.+ .+.+.|.+... .. .... .... ...|.|.....+|.|.|+|.|.|......
T Consensus 137 ~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 137 NNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp EEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred eeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence 4433 35899965211 10 1000 0111 23577788888889999999999865543
No 314
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.35 E-value=8e-12 Score=116.58 Aligned_cols=172 Identities=15% Similarity=0.074 Sum_probs=112.1
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccccceEE--EE----EecceeeEEEccCCCCCceEEEEEEEecCC-----
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIK--EF----VTSTTASLNIKNSVRKDSGIYKIEAKNDYG----- 304 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~--~~----~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g----- 304 (516)
..+.+|+.+.+.|.+ .+ +.+.+.|.+....... .. .......|.|.+++.+|+|.|+|.+.|...
T Consensus 16 ~~V~~G~~VtL~C~~---~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s 91 (257)
T 1b6u_A 16 PLVKSEETVILQCWS---DV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLS 91 (257)
T ss_dssp SEEESSCCEEEEEEE---SS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCC
T ss_pred CEecCCCCEEEEEec---CC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCcccc
Confidence 346789999999998 33 4678889653322111 10 123467899999999999999999986532
Q ss_pred CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecC
Q psy7039 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384 (516)
Q Consensus 305 ~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~ 384 (516)
..+..+.|.|......|. +. ......+.+|++++|.|.+.+.+
T Consensus 92 ~~S~~~~L~V~~~~~~P~--l~----------------------------------~~p~~~V~~G~~vtL~C~~~~~~- 134 (257)
T 1b6u_A 92 APSDPLDIVITGLYEKPS--LS----------------------------------AQPGPTVLAGESVTLSCSSRSSY- 134 (257)
T ss_dssp CCCCCEEEEEECSSCCCE--EE----------------------------------CSSCTTCBTTCEEEEEEECSSCC-
T ss_pred ccCCCEEEecccCCCCcc--eE----------------------------------ccCCCccCCCCEEEEEEeCCCCC-
Confidence 234456777776433221 00 00112467999999999998764
Q ss_pred CceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCC-----ceeEEEEEEEecCCC
Q psy7039 385 PTPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVG-----SDSASCKVYVVDKPS 451 (516)
Q Consensus 385 ~~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G-----~~s~s~~l~v~~~p~ 451 (516)
+.+.|++++..+......... .......|.|.++. |+|.|+|.|.|..+ ..+....|.|...|.
T Consensus 135 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~---D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT---HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC---SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred cEEEEEECCcccCcccccccccCCceeEEEEecccc---cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 689999999765432211111 11235679998884 99999999998643 235557788877654
No 315
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-11 Score=101.14 Aligned_cols=96 Identities=27% Similarity=0.390 Sum_probs=81.2
Q ss_pred eccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 6 LIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 6 ~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
.+.++.++|++|.+|++..+++++|.|+|.+|. +.+++|.+|.|+|+..+. .|..........+.+.|.+|+++..|.
T Consensus 10 ~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 88 (119)
T 2ed7_A 10 AIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYT 88 (119)
T ss_dssp SCCCSSSSCCCCSCCEEEEECSSCEEEECCCCS-CCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEE
T ss_pred cCCCCCCCCcCCcceEEEecCCCEEEEEEeCCC-CCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEE
Confidence 455678899999999999999999999999986 456679999999998766 565554444568999999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 89 ~~V~A~n~~G~g~~S~~~ 106 (119)
T 2ed7_A 89 FRVVAYNEWGPGESSQPI 106 (119)
T ss_dssp ECCEEEESSCBCSCCCCE
T ss_pred EEEEEEcCCccCCCcCCE
Confidence 999999999988876544
No 316
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.35 E-value=1.7e-11 Score=111.18 Aligned_cols=159 Identities=9% Similarity=0.014 Sum_probs=102.4
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ceeeEEeeCC--eee------------ccCC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FLNHGWSING--QVC------------QIGG 185 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~i~W~~~~--~~~------------~~~~ 185 (516)
+..+.+.+|+.+.|.|.+.+ +.+ .+.+.|++++ ..+ ....
T Consensus 7 p~~~~v~~G~~v~L~C~v~~-------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~ 61 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSS-------------------------SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPD 61 (216)
T ss_dssp CSEEEECTTCCEEEEEECCT-------------------------TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCT
T ss_pred CCcEEecCCCeEEEEEEeec-------------------------CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCC
Confidence 56688999999999999540 332 5678888743 111 1134
Q ss_pred ceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc----eEEEEEeec----eeeee----ccccCCceEEEEEEEEcc
Q psy7039 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT----ATASAHVTG----TEFTD----NNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 186 ~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~----~~~~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~ 253 (516)
|+.+...+...+|.|.+++.+|+|.|.|.+.|..+. ....+.+.. ..+.. .....|..+.+.|.+
T Consensus 62 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--- 138 (216)
T 2xzc_L 62 RFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL--- 138 (216)
T ss_dssp TEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEE---
T ss_pred ceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEE---
Confidence 666665666779999999999999999999997751 111222211 11111 011247899999998
Q ss_pred CC-CCCc-eeccccccc---ce-EEE-EE--ec-----ceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 254 AG-TEKP-KISLDALIG---KR-IKE-FV--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 254 ~g-~p~p-~i~W~~~~~---~~-~~~-~~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.| .|+| .+.|.+... .. ... .. .. ....|.|..+..+|.|.|+|.|.|......
T Consensus 139 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (216)
T 2xzc_L 139 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP 206 (216)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred EeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence 44 4554 899966211 11 111 00 11 123788999999999999999999875544
No 317
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.35 E-value=8.3e-12 Score=101.90 Aligned_cols=99 Identities=25% Similarity=0.307 Sum_probs=82.6
Q ss_pred cceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 3 ~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
..+.+.+..++|++|.+|++..++.++|.|+|.+|..+.++.|.+|+|+|+..+. .|..........++++|.+|++++
T Consensus 7 ~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 86 (120)
T 1x5f_A 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPAT 86 (120)
T ss_dssp SSCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTC
T ss_pred CCEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCC
Confidence 4566778899999999999999999999999999861344589999999998765 565554455568999999999999
Q ss_pred eEEEEEEEecCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~ 101 (516)
.|.|+|+|.|..|.+.++..
T Consensus 87 ~Y~~~V~A~n~~G~g~~S~~ 106 (120)
T 1x5f_A 87 VYIFRVMAQNKHGSGESSAP 106 (120)
T ss_dssp EEEEEEEEECSSCEEEECCC
T ss_pred EEEEEEEEECCCccCCCCCC
Confidence 99999999999998776543
No 318
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-11 Score=99.63 Aligned_cols=98 Identities=20% Similarity=0.339 Sum_probs=80.5
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..+.+++.++.|. +|.+|++..++.++|.|+|.+|.. +.|.+|.|+|+..+. .+........+.++++|.+|+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 82 (119)
T 2ee2_A 6 SGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLL 82 (119)
T ss_dssp SSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCC
T ss_pred CCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCC
Confidence 56788899988887 788999999999999999999854 569999999987654 222233444567899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+++.|.|+|+|.|..|.+.++...
T Consensus 83 p~t~Y~~~V~A~n~~G~g~~S~~~ 106 (119)
T 2ee2_A 83 PDTQYFIEVGACNSAGCGPPSDMI 106 (119)
T ss_dssp TTCEEEEEEEEECSSSCCCCCCCE
T ss_pred CCCEEEEEEEEEcCCccCCCCCCE
Confidence 999999999999999988876543
No 319
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.34 E-value=6.4e-12 Score=117.06 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=107.6
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. ..++.+........|.|.+++.+|
T Consensus 44 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 120 (252)
T 3bkj_L 44 LPVNLGEQASISCRS---SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED 120 (252)
T ss_dssp EEECTTSCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEEeCCCcEEEEEEc---CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence 346789999999998 6666 6889996521 123333334556689999999999
Q ss_pred ceEEEEEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 292 SGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 292 ~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
+|.|+|.+.|..+.. .....+.|.....+|. +.+. .....+..|
T Consensus 121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~--v~~~---------------------------------~~~~~~~~g 165 (252)
T 3bkj_L 121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPT--VSIF---------------------------------PPSSEQLTS 165 (252)
T ss_dssp CEEEEEEECSBSSCEECCCEEEEECCCCBCCE--EEEE---------------------------------CCCHHHHHH
T ss_pred CEEEEEEEEcCCccEECCCEEEEEeCCCcCcE--EEEe---------------------------------CCChhhcCC
Confidence 999999999876532 2234566644322221 0000 000112368
Q ss_pred CeEEEEEEEeeecC-C-ceEEEECCeecCCCCceE--EEEcCC-----eEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 371 EEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIK--FETSEN-----QTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 371 ~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~--~~~~~~-----~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|.|.+.|.++ + .+.|++++..+....... .....+ .+.|.|..+.. .|.|.|+|.|.|......
T Consensus 166 ~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 166 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp TEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHH-HHCCEEEEEEECTTCSSC
T ss_pred CcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhc-cCCCeEEEEEEeCCCCCC
Confidence 89999999998544 3 799999998765430110 000111 14689999998 999999999999876543
No 320
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.34 E-value=1.5e-11 Score=113.21 Aligned_cols=162 Identities=7% Similarity=0.065 Sum_probs=107.1
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--ee------------eccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QV------------CQIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~------------~~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++.. .. ....
T Consensus 29 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 82 (237)
T 3sob_L 29 QSPSSLSASVGDRVTITCRAS--------------------------QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVP 82 (237)
T ss_dssp EECSEEEEETTCCEEEEEEES--------------------------SCCTTCEEEEEECTTSCCEEEEETTTEECTTCC
T ss_pred eCCCeEEEeCCCcEEEEEecC--------------------------CCCCceEEEEEECCCCCCEEEEEeccccCCCCC
Confidence 445678899999999999999 7778889998732 11 1123
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce---EEEEEeec----eeee----eccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA---TASAHVTG----TEFT----DNNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~---~~~~~~~~----~~~~----~~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. .....+|..+.+.|.+
T Consensus 83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~--- 159 (237)
T 3sob_L 83 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLL--- 159 (237)
T ss_dssp TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEE---
T ss_pred CcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEE---
Confidence 56776666678899999999999999999998865421 11222211 1111 1112347789999998
Q ss_pred CC-CC-Cceecccccccce---E-EEE--Eec------ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 254 AG-TE-KPKISLDALIGKR---I-KEF--VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 254 ~g-~p-~p~i~W~~~~~~~---~-~~~--~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
.| .| .+.+.|.+..... . ... ... ....|.|.....+|.|.|+|.|.|........
T Consensus 160 ~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 229 (237)
T 3sob_L 160 NNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 229 (237)
T ss_dssp EEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred cccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence 44 34 5899997521100 0 100 001 13467888899999999999999987655433
No 321
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.34 E-value=2.5e-11 Score=110.98 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=80.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCC-----C---cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYG-----I---DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g-----~---~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~ 348 (516)
....|.|.+++.+|+|.|.|.+.|..| . ......|.|...+ .+|. +... +|
T Consensus 77 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--v~~~------------~~------ 136 (225)
T 1op3_H 77 DFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPS--VFPL------------AP------ 136 (225)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCE--EEEE------------CC------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCe--EEEe------------cc------
Confidence 456899999999999999999998765 1 1123566676522 1110 0000 00
Q ss_pred ceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC----eEEEEEcCceecC
Q psy7039 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN----QTIYRNKSAKRAT 422 (516)
Q Consensus 349 ~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~l~i~~~~~~~ 422 (516)
. ..+..|+.+.|.|.+.|. |.+ .+.|++++..+............+ .+.|.|..+.. +
T Consensus 137 --------------~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~ 200 (225)
T 1op3_H 137 --------------S-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-G 200 (225)
T ss_dssp --------------C-TTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGT-T
T ss_pred --------------c-ccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhc-C
Confidence 0 013578999999999987 666 999999886532110000001111 24689988887 7
Q ss_pred CceEEEEEEEcCCCcee
Q psy7039 423 DSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~s 439 (516)
| |.|+|.|.|..+...
T Consensus 201 ~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 201 T-QTYICNVNHKPSNTK 216 (225)
T ss_dssp C-CCCCEEEEEGGGTEE
T ss_pred C-CcEEEEEEcCCCCcc
Confidence 8 999999999766543
No 322
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.34 E-value=2e-11 Score=98.93 Aligned_cols=99 Identities=26% Similarity=0.416 Sum_probs=81.3
Q ss_pred CcceeccCC--CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNP--FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~--~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|..+.+++. .+.|++|.++++..++.++|.|+|.+|.. .++.|.+|.|+|+..+. .|.. .....++++|.+|+
T Consensus 4 S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~i~~L~ 79 (116)
T 1x5g_A 4 GSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVS-GNGEIQNYKLYYMEKGTDKEQD---VDVSSHSYTINGLK 79 (116)
T ss_dssp CCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSC-CSSCCSEEEEEEEETTCCCCCC---EEECSSEEEECSCC
T ss_pred ccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCC-CCCcccEEEEEEEECCCCccEE---EecCCceEEEcCCC
Confidence 567778874 37899999999999999999999999863 44579999999998765 5532 23368899999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCcc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~~ 104 (516)
+++.|.|+++|.|..|.+.++.....
T Consensus 80 p~t~Y~~~V~A~n~~G~g~~S~~~~~ 105 (116)
T 1x5g_A 80 KYTEYSFRVVAYNKHGPGVSTPDVAV 105 (116)
T ss_dssp TTCEEEEEEEEECSSCCCCBCCCCCE
T ss_pred CCCEEEEEEEEEcCCCcCCCCCCEEE
Confidence 99999999999999998887655433
No 323
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.34 E-value=4.8e-12 Score=114.37 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=105.2
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 10 SLVKPSQTLSLTCSV---TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp SEECTTSCEEEEEEE---ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEecCCCcEEEEEEE---ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 456789999999998 4543 4789996521 1 12222221 234589999999
Q ss_pred CCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEE
Q psy7039 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~ 368 (516)
.+|+|.|+|.+.|.. .......+.|...+.. .|.... ......+.
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~--~P~v~~--------------------------------~~~~~~~~ 131 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAKTT--PPSVYP--------------------------------LAPGSAAQ 131 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCCCB--CCEEEE--------------------------------ECCTTSCC
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCCCC--CCEEEE--------------------------------ecCCcccc
Confidence 999999999999863 2222345666532211 110000 00011245
Q ss_pred cCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 369 AGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 369 ~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|.|..|.....
T Consensus 132 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 132 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTW-PS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp CSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGT-TT-SCCEEEEEEGGGTEEEE
T ss_pred cCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHc-CC-CcEEEEEEeCCCCcccc
Confidence 78999999999987 878 99999988754211110011111 124689988887 77 99999999999876543
No 324
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.34 E-value=3.5e-12 Score=104.00 Aligned_cols=99 Identities=22% Similarity=0.363 Sum_probs=83.2
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
|+.+.+++.++.|++|.+|++..+++++|.|+|.+|. +.++.|.+|+|+|+..+. .+..........++++|.+|+++
T Consensus 6 S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 84 (119)
T 1wfn_A 6 SGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPG-EKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTAL 84 (119)
T ss_dssp SCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCT-TCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTT
T ss_pred CCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCC
Confidence 6778899999999999999999999999999999986 444569999999998664 33233344567899999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCC
Q psy7039 81 ETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~ 101 (516)
+.|.|+|+|.|..|.+.++..
T Consensus 85 t~Y~~~V~A~n~~G~g~~S~~ 105 (119)
T 1wfn_A 85 TTYTIEVAAMTSKGQGQVSAS 105 (119)
T ss_dssp CEEEEEEEEECSSCEEEEEEE
T ss_pred CEEEEEEEEEcCCccCCCCCC
Confidence 999999999999998876543
No 325
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.34 E-value=1.7e-10 Score=109.35 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=123.9
Q ss_pred ecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 276 ~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
......+.|.+|.+...|.+++.|.|..|... ...+.+...|.+|.. +.+...+.+++.|+|.+|.. .+.+|.
T Consensus 64 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~~----~i~~Y~- 136 (283)
T 1tdq_A 64 QPPLSQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEA----EAQEYK- 136 (283)
T ss_dssp CTTCSEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECCCCCCEE-EEEEEECSSCEEEEEECCSS----CCSEEE-
T ss_pred CCCCCEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEECCCCCCCc-eEEEecCCCeEEEEecCCCC----CccEEE-
Confidence 45567889999999999999999999877653 344455555555533 78888899999999998862 355551
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCC---eEEEEEcCceecCCceEEEEEEE
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
|.|...+. ........... ...+.|.+|.+ ...|.|++.|.
T Consensus 137 -------------------------------v~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~ 180 (283)
T 1tdq_A 137 -------------------------------VVYSTLAG----EQYHEVLVPKGIGPTTKTTLTDLVP-GTEYGVGISAV 180 (283)
T ss_dssp -------------------------------EEEEETTC----CCCEEEEEECCSSSEEEEEECSCCT-TCEEEEEEEEE
T ss_pred -------------------------------EEEEeCCC----CcceEEECCCCCcccceEEEecCCC-CCEEEEEEEEE
Confidence 22222211 01112222233 57899999999 99999999999
Q ss_pred cCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 433 n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..|.+. ...+.....|.+| .++.+..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 181 n~~g~s~-~~~~~~~t~~~~P-~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~ 238 (283)
T 1tdq_A 181 MNSKQSI-PATMNARTELDSP-RDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGIS 238 (283)
T ss_dssp ETTEECC-CEEEEEECCCCCC-EEEEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCC
T ss_pred eCCCCCc-ceEEEecCCCCCC-CccEEeEecCCEEEEEEeCCC----CcccEEEEEEEcCCCCe
Confidence 9888643 3445566666677 788898889999999999863 66999999999876544
No 326
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.34 E-value=2.6e-12 Score=112.18 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=101.1
Q ss_pred cccCCceEEEEEEEEccCCCCCceecccccccce-------E--------EEEEecceeeEEEccCCCCCceEEEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKR-------I--------KEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~-------~--------~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n 301 (516)
....|+.+.|.|.+ .+ +.+.+.|.+....- . ++.....++.|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~~~~G~~VtL~c~~---~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 6 YGVVYGNVTFHVPS---NV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEETTCCEEECCCC---SS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEcCCCEEEcCCC---CC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 35678999999876 33 78899997532210 0 112223567899999999999999999998
Q ss_pred cCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEee
Q psy7039 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381 (516)
Q Consensus 302 ~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g 381 (516)
..| ...+.|.|..++..|.. .+ ... ...|.|.+.+
T Consensus 82 ~~~--~~~~~L~V~~~~~~p~i--------------~~----------------------------~~~-~~~L~C~~~~ 116 (171)
T 1ccz_A 82 ITD--TMKFFLYVLEMVSKPMI--------------YW----------------------------ECS-NATLTCEVLE 116 (171)
T ss_dssp CCS--CEEEEEEEECCCCCCEE--------------EE----------------------------ETT-TTEEEEECSS
T ss_pred CCC--cEEEEEEEECcCCCCEE--------------EE----------------------------ecC-CcEEEEEeCC
Confidence 877 56777888765433210 01 011 1268999999
Q ss_pred ecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 382 RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 382 ~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
.|.|.+.|++++..+...... .+.+.+ . .|.|.|+|.|.|..|..+.++.|
T Consensus 117 ~p~p~i~W~~~~~~l~~~~~~---------~l~~~~--~-~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 117 GTDVELKLYQGKEHLRSLRQK---------TMSYQW--T-NLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp CSSCEEEEEETTEEEEEESSS---------EEEEEC--S-CCSSCEEEEEEETTEEEEEEECC
T ss_pred CCCcEEEEEECCEECcCCcce---------EEEEec--c-CCCceEEEEEEcccCcccceeEE
Confidence 999999999999876432221 233332 4 88999999999999987665544
No 327
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=99.33 E-value=4.1e-11 Score=107.44 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=66.2
Q ss_pred CCCcceEEEeee--CCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 15 GKPTDLEATDWD--KDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 15 ~~p~~l~~~~~~--~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.+|.+|.+..++ +++|.|+|.+| +++.|.+|.|+|+..+. .|... ......+++.|.+|++++.|.|+|.|.
T Consensus 1 s~P~~l~v~~v~~~~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 76 (201)
T 2ha1_A 1 SGPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEA-TIPGHLNSYTIKGLKPGVVYEGQLISI 76 (201)
T ss_dssp CCCCEEECCSCSCCSSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEE-EECTTCCEEEECSCCTTEEEEEEEEEE
T ss_pred CCceeEEEEecCCCCCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEE-ecCCCccEEEecCCCCCCEEEEEEEEE
Confidence 378999999887 99999999997 34679999999997543 55544 344568899999999999999999999
Q ss_pred cCCCCCCC
Q psy7039 91 NAAGPGEA 98 (516)
Q Consensus 91 n~~g~~~~ 98 (516)
|..|.+.+
T Consensus 77 n~~G~~~~ 84 (201)
T 2ha1_A 77 QQYGHQEV 84 (201)
T ss_dssp CTTSCEEE
T ss_pred ecccccCc
Confidence 99887754
No 328
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.33 E-value=9.4e-13 Score=119.19 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=104.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCc
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGR 186 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~ 186 (516)
+..+.+.+|+.+.|.|.+. +.|.+.+.|+++ +..+. ...|
T Consensus 6 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r 59 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGD--------------------------QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPER 59 (212)
T ss_dssp CSEEEEETTSCCCEEEEET--------------------------TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTT
T ss_pred CCeEEEeCCCcEEEEEecC--------------------------CCCCCeEEEEEECCCCCcEEEEEeccccCCCcccc
Confidence 5668899999999999988 777778999874 22221 1356
Q ss_pred eEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eeeee----ccccCCceEEEEEEEEc
Q psy7039 187 ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEFTD----NNVHEGKAYEYRVSAVN 252 (516)
Q Consensus 187 ~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~~~----~~l~~g~~~~~~~~~~~ 252 (516)
+.+...+....|.|.+++.+|+|.|.|.+.|..+.. ...+.+.. ..+.. ....+|..+.+.|.+
T Consensus 60 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~-- 137 (212)
T 1nfd_E 60 FSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLV-- 137 (212)
T ss_dssp EEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEE--
T ss_pred EEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEE--
Confidence 666656667899999999999999999999622211 11122210 11111 123458899999998
Q ss_pred cCCC-CC-ceecccccccc---eEE---EEEe----cceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 253 AAGT-EK-PKISLDALIGK---RIK---EFVT----STTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 253 ~~g~-p~-p~i~W~~~~~~---~~~---~~~~----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|. |+ |.+.|.+.... ... .... .....|.|.++..+|+|.|+|.|.|..+...
T Consensus 138 -~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (212)
T 1nfd_E 138 -NDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203 (212)
T ss_dssp -EEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred -EeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence 454 44 79999652110 000 0000 0124588999999999999999999876643
No 329
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=5e-12 Score=112.19 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=93.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.+.|..|........+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----~~p~~~-~~~~~~~~~~g~~~~l~C~~~-------- 125 (192)
T 2iep_A 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK-----MKPKIT-RPPINVKIIEGLKAVLPCTTM-------- 125 (192)
T ss_dssp GGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE-----EEEEEE-ECCCCEEEETTSCEEECCEEE--------
T ss_pred CccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE-----eCCccc-cCCcceEEeCCCcEEEEEEEe--------
Confidence 345799999999999999999998776532221222222 245554 445567899999999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+....++.+... ..|.|.+++.+|+|.|+|.+.|..|..
T Consensus 126 ------------------g~p~~~v~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 179 (192)
T 2iep_A 126 ------------------GNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTA 179 (192)
T ss_dssp ------------------EESCCEEEEEETTEECCCCSSEEECTT---SCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ------------------ccCCceEEEEeCCEEccCCCcEEEecC---CcEEEecCChhhCEEEEEEEEcCCCcE
Confidence 889999999999998887766655432 379999999999999999999988765
No 330
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=99.33 E-value=1.5e-11 Score=113.23 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
++|++|.+|++..++++++.|+|.+|. +.+.+|.|+|+..+.............+++.|.+|++++.|.|+|+|.|
T Consensus 4 ~p~~~P~~l~~~~~~~~si~l~W~~p~----g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 79 (234)
T 3f7q_A 4 MDLGAPQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYG 79 (234)
T ss_dssp -CCCCCEEEEEEECSSSCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCcceEEEEcCCCEEEEEEECCC----CccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEe
Confidence 578999999999999999999999972 4689999999976541111122335788999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy7039 92 AAGPGEASKP 101 (516)
Q Consensus 92 ~~g~~~~s~~ 101 (516)
..|.+..+..
T Consensus 80 ~~G~g~~s~~ 89 (234)
T 3f7q_A 80 AQGEGPYSSL 89 (234)
T ss_dssp TTEECCCCCC
T ss_pred CCCcCCCCCe
Confidence 9888776543
No 331
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-11 Score=99.36 Aligned_cols=88 Identities=30% Similarity=0.588 Sum_probs=78.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
...+.+..|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+........|.|.++.. .|+|.|+|.|.|..|..+..
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~ 108 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAAR-SDSGEYELSVQIENMKDTAT 108 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCT-TTCEEEEEEEECSSCEECCE
T ss_pred CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCCh-hcCEEEEEEEEeCCCeEEEE
Confidence 456789999999999999999999999999999886 4566676667778899999999 99999999999999999999
Q ss_pred EEEEEecCCC
Q psy7039 442 CKVYVVDKPS 451 (516)
Q Consensus 442 ~~l~v~~~p~ 451 (516)
+.|.|..+|+
T Consensus 109 ~~l~V~~~P~ 118 (118)
T 2e7c_A 109 IRIRVVEKAG 118 (118)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999987663
No 332
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.33 E-value=1.4e-11 Score=99.57 Aligned_cols=89 Identities=24% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 6 ~pp~i~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~~~~ 58 (114)
T 2cqv_A 6 SGPQII-QFPEDQKVRAGESVELFGKVT--------------------------GTQPITCTWMKFRKQIQESEHMKVEN 58 (114)
T ss_dssp CCCEES-CCCCSEEEETTCCEEEEEEEE--------------------------SSSSCEEEEEESSSBCCCSSSEEEEE
T ss_pred CCCEEE-eCCCCeEEeCCCeEEEEEEEE--------------------------cCCCCEEEEEECCEECcCCCCEEEEE
Confidence 467676 677789999999999999999 99999999999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
......|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 59 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~ 94 (114)
T 2cqv_A 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVN 94 (114)
T ss_dssp CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEE
T ss_pred cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEE
Confidence 777889999999999999999999999887655443
No 333
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.33 E-value=1.6e-11 Score=108.75 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=96.2
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
.....|.|.+++..|.|.|+|.+.|..|... ....+.+. .+|.+. ......+.+|+.+.|.|.+.
T Consensus 55 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~l~V~---~~p~~~--~~~~~~~~~g~~v~l~C~~~------- 119 (192)
T 2va4_A 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDE---KQAFLQVF---VQPHII--QLKNETTYENGQVTLVCDAE------- 119 (192)
T ss_dssp TTTTEEEECSCCGGGCEEEEEEEEETTEEEE---EEEEEEEE---EEEEEE--EECCEEECTTSEEEEEEEEE-------
T ss_pred CCeeEEEEecCChhcCcEEEEEEEccccccc---eEEEEEEE---ccCccc--ccCcceEEeCCeEEEEEEec-------
Confidence 3467899999999999999999998766433 11112221 234443 22345677899999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEeeC--Ceeecc-----CCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQI-----GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+.|.+.+.|+++ +..+.. ..++.+........|.|.+++.+|+|.|+|.+.|..
T Consensus 120 -------------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 180 (192)
T 2va4_A 120 -------------------GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180 (192)
T ss_dssp -------------------EESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred -------------------CCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecC
Confidence 899999999998 555543 345666666677899999999999999999999999
Q ss_pred CceEEEEEe
Q psy7039 220 GTATASAHV 228 (516)
Q Consensus 220 g~~~~~~~~ 228 (516)
|.......+
T Consensus 181 g~~~~~~~l 189 (192)
T 2va4_A 181 GGHQKSMYL 189 (192)
T ss_dssp CEEEEEEEE
T ss_pred CceEEEEEE
Confidence 987665543
No 334
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.33 E-value=1.9e-11 Score=96.65 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=79.3
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+........|.|.++.. .|.|.|+|.|.|..|..+..
T Consensus 15 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~~~ 93 (103)
T 3qp3_A 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHT-DDSGTYRAVCTNYKGEASDY 93 (103)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred CcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCc-ccCEEEEEEEEeCCCcEEEE
Confidence 45678999999999999999999999999999999888888888777778999999999 99999999999999999999
Q ss_pred EEEEEecC
Q psy7039 442 CKVYVVDK 449 (516)
Q Consensus 442 ~~l~v~~~ 449 (516)
+.|.|...
T Consensus 94 ~~l~V~~~ 101 (103)
T 3qp3_A 94 ATLDVTGG 101 (103)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99988754
No 335
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.33 E-value=2.9e-10 Score=103.46 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=81.3
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC--CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY--GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~--g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
....|.|.+++.+|+|.|.|.+.+.. ........+.|...+..+.. +...
T Consensus 79 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~--------------------------- 130 (221)
T 3m8o_H 79 NTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPK-VFPL--------------------------- 130 (221)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCE-EEEE---------------------------
T ss_pred CEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCe-EEEe---------------------------
Confidence 45689999999999999999999864 22233456666532211100 0000
Q ss_pred cccccccccEEEEcCCeEEEEEEEee-ecC-C-ceEEEECCeecC----------CCCceEEEEcCCeEEEEEcCceecC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSG-RPK-P-TPIWTVNGDEVS----------PDGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~-~-~i~W~~~~~~l~----------~~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
.+.. . ..|+.+.|.|.+.+ .|. + .+.|++++..+. .+..+... +.|.|..... .
T Consensus 131 -----~~~~-~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~-~ 197 (221)
T 3m8o_H 131 -----SLCS-T-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQC-L 197 (221)
T ss_dssp -----ECCS-C-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGS-C
T ss_pred -----cCcc-c-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHc-C
Confidence 0011 1 57899999999998 665 3 899999887652 23333332 3689999988 8
Q ss_pred CceEEEEEEEcCCCce
Q psy7039 423 DSGSYTIQLVNTVGSD 438 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~ 438 (516)
|.|.|+|.|.|..+..
T Consensus 198 d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 198 AGKSVTCHVKHYTNPS 213 (221)
T ss_dssp TTCEEEEEEEETTSCC
T ss_pred CCCeEEEEEEECCCCc
Confidence 9999999999998653
No 336
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.33 E-value=2.1e-11 Score=108.56 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=90.9
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 67 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------- 131 (195)
T 2c5d_C 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQ--PGYVGLE---GLPYFL-EEPEDRTVAANTPFNLSCQAQ--------- 131 (195)
T ss_dssp EEEEEESSCCSTTCEEEEEEEEETTEEEECC--CEEEEEC---CSCEEE-ECCCCEEECTTCCEEEEEEEE---------
T ss_pred ccEEEEEeccccCCcEEEEEEEeCCCceecc--cEEEEEe---cCCeEE-cCCCcEEEcCCCEEEEEeECC---------
Confidence 3579999999999999999999976643221 2223332 356665 455668899999999999999
Q ss_pred cccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+ .+.|++++..+...... .....|.|.+++ |+|.|+|.+.|..|...
T Consensus 132 -----------------g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~ 183 (195)
T 2c5d_C 132 -----------------GPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTT 183 (195)
T ss_dssp -----------------CSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEE
T ss_pred -----------------CCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceE
Confidence 99999 99999999888654432 356789999998 78999999999888764
No 337
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.33 E-value=1.8e-11 Score=111.38 Aligned_cols=161 Identities=13% Similarity=0.099 Sum_probs=104.8
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---ec----------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---CQ---------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~~---------- 182 (516)
.+..+.+.+|+.+.|.|.+. +.+ .+.+.|++++ .. +.
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~ 59 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVAS--------------------------GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYA 59 (220)
T ss_dssp EECCEEECTTCCEEEEEEEE--------------------------SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTC
T ss_pred ccCCEEEcCCCeEEEEEEEc--------------------------CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccc
Confidence 34567899999999999998 554 5677887742 11 10
Q ss_pred ------cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eee-e---eccccC
Q psy7039 183 ------IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEF-T---DNNVHE 240 (516)
Q Consensus 183 ------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~-~---~~~l~~ 240 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+ . ...+.+
T Consensus 60 ~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~ 139 (220)
T 1pz5_B 60 THYAESVKGRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTS 139 (220)
T ss_dssp EEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSC
T ss_pred cccCcccCCcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCC
Confidence 0246655432 345699999999999999999999865321 11222221 111 1 123567
Q ss_pred CceEEEEEEEEccCCC-CCc-eecccccccc----eEE-EE---EecceeeEEEccCCCCCceEEEEEEEecCCCcceeE
Q psy7039 241 GKAYEYRVSAVNAAGT-EKP-KISLDALIGK----RIK-EF---VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI 310 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~----~~~-~~---~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~ 310 (516)
|..+.+.|.+ .|. |.| .+.|.+.... ... .. .......|.|.....++ |.|+|.|.|..|.....+
T Consensus 140 g~~v~L~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 140 GSSVTLGCLV---KGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK 215 (220)
T ss_dssp SSSEEEEEEE---EEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CCcEEEEEEE---EEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence 9999999998 555 888 9999763321 000 00 01124568888888766 999999999998655443
No 338
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.33 E-value=2.5e-11 Score=106.67 Aligned_cols=114 Identities=11% Similarity=0.105 Sum_probs=88.4
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
...|.|.+++..|.|.|+|.|.|..|..... ...+.+. .+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 59 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~l~V~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~--------- 123 (182)
T 1rhf_A 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQ--PVWLTVE---GVPFFT-VEPKDLAVPPNAPFQLSCEAV--------- 123 (182)
T ss_dssp EEEEEESSCCGGGCEEEEEEESSCTTCEECC--CEEEEEE---CSCEEE-ECCCCEEECTTCCEEEEEEEE---------
T ss_pred eEEEEEeecCcccCeEEEEEEEcCCCcEEEE--EEEEEEe---cCCeEE-ecCcceEecCCCEEEEEeEec---------
Confidence 3679999999999999999999875532222 2223322 356666 455668899999999999999
Q ss_pred cccccccccCccceeecCcCce-eeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFL-NHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+ .+.|++++..+..... ....|.|.++ +|+|.|+|.+.|..|...
T Consensus 124 -----------------g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~ 173 (182)
T 1rhf_A 124 -----------------GPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLAS 173 (182)
T ss_dssp -----------------CSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEE
T ss_pred -----------------CCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcc
Confidence 99998 9999999988754321 4568999998 589999999999888664
No 339
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.33 E-value=2.8e-12 Score=117.88 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=107.1
Q ss_pred eccccCCceEEEEEEEEccCCCC-Cc-eecccccc-------------------cceEEEEEecceeeEEEccCCCCCce
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE-KP-KISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKDSG 293 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p-~p-~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d~g 293 (516)
...+.+|+.+.+.|.+ .|.+ .+ .+.|.+.. ..++..........|.|.+++.+|+|
T Consensus 28 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 104 (234)
T 2j6e_L 28 SASGTPGQRVTISCSG---SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEA 104 (234)
T ss_dssp CCCBCTTCEEEEEEEC---CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCS
T ss_pred cEEeeCCCcEEEEEEe---cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCE
Confidence 3457789999999998 5543 34 68995421 12333333455679999999999999
Q ss_pred EEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcC
Q psy7039 294 IYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAG 370 (516)
Q Consensus 294 ~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g 370 (516)
.|+|.|.|..+. ......+.|...+..+.. +.+. ........|
T Consensus 105 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~---------------------------------~~~~~~~~g 150 (234)
T 2j6e_L 105 DYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPS-VTLF---------------------------------PPSSEELQA 150 (234)
T ss_dssp EEEEEEEETTTTEEEECCCBCCCBCCCCCCCCC-CCEE---------------------------------CCCHHHHTT
T ss_pred EEEEEEEcCCcceeEecCCEEEEEecCCCCCCc-cccc---------------------------------CCChhHhcC
Confidence 999999998762 222344555332211110 0000 011112357
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeecCCCCceE-EEE-cC----CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 371 EEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIK-FET-SE----NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 371 ~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~-~~~-~~----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+.+.|.|.+.|.+++ .+.|++++..+..+.... ... .. ..+.|.|..+.. .|.|.|+|.|.|..+...
T Consensus 151 ~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~~~~~ 226 (234)
T 2j6e_L 151 NKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW-KSHRSYSCQVTHEGSTVE 226 (234)
T ss_dssp SCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGT-TTSCCEEEEEEBTTBCCC
T ss_pred CceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEeCCCceE
Confidence 899999999986443 899999998875431100 000 11 225789999999 999999999999987643
No 340
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.32 E-value=5.4e-12 Score=114.04 Aligned_cols=156 Identities=10% Similarity=0.041 Sum_probs=101.9
Q ss_pred ceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeC--Ceeec------------cCCceE
Q psy7039 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSIN--GQVCQ------------IGGRAD 188 (516)
Q Consensus 123 ~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~--~~~~~------------~~~~~~ 188 (516)
.+.+.+|+.+.|.|.+. +.+.+.|+++ +.... ...|+.
T Consensus 9 ~~~v~~G~~v~L~C~~~----------------------------~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~ 60 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT----------------------------SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFS 60 (211)
T ss_dssp EEEECTTCEEEEEEECC----------------------------CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEE
T ss_pred eEEEcCCCCEEEEEEEC----------------------------CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEE
Confidence 68899999999999874 5567777773 22111 235676
Q ss_pred EeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc--eEE--EEEeec-----eeee----eccccCCceEEEEEEEEccCC
Q psy7039 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT--ATA--SAHVTG-----TEFT----DNNVHEGKAYEYRVSAVNAAG 255 (516)
Q Consensus 189 ~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~--~~~--~~~~~~-----~~~~----~~~l~~g~~~~~~~~~~~~~g 255 (516)
+.......+|.|.+++.+|+|.|.|.+.+..+. ... .+.+.. ..+. ...+..|..+.+.|.+ .|
T Consensus 61 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~---~g 137 (211)
T 3tv3_L 61 GSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI---SD 137 (211)
T ss_dssp EEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEE---EE
T ss_pred EEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEe---ee
Confidence 666667789999999999999999999997762 111 222221 1111 1112258999999998 45
Q ss_pred C--CCceecccccccce---EE---EEEe-----cceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 256 T--EKPKISLDALIGKR---IK---EFVT-----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 256 ~--p~p~i~W~~~~~~~---~~---~~~~-----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
. +.+.+.|.+..... .. .... .....|.|..+..+|.|.|+|.|.|..+....+
T Consensus 138 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 138 FYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp EBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred ecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence 3 35789996521100 00 0000 112468888888889999999999987654433
No 341
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.8e-11 Score=102.00 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=82.5
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCC-C--eEEeEEeecCCcEEEeCC
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTG-N--WEKAVVVPAGETSCTVPG 76 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~-~--~~~~~~~~~~~~~~~i~~ 76 (516)
|+.+.++++++.|. +|.++++..++.+++.|+|.+|. .+.++.|.+|.|+|+..+. . +..........++++|.+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (134)
T 2edx_A 6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVG 85 (134)
T ss_dssp CCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEES
T ss_pred cCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCC
Confidence 67788999999998 89999999999999999999983 2445579999999988655 2 333333346789999999
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
|++++.|.|+|+|.|..|.+..+...
T Consensus 86 L~p~t~Y~~~V~A~n~~G~g~~S~~~ 111 (134)
T 2edx_A 86 LEKWTEYRVWVRAHTDVGPGPESSPV 111 (134)
T ss_dssp CCTTCEEEEEEEEEETTBCCCCCCCE
T ss_pred CCCCCEEEEEEEEEcCCCcCCCCCCE
Confidence 99999999999999999988776543
No 342
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.32 E-value=1.2e-11 Score=100.45 Aligned_cols=101 Identities=30% Similarity=0.510 Sum_probs=84.4
Q ss_pred eccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC-C-CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 6 LIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-G-NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 6 ~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
...++.++|++|.+|++..++.++|.|+|.+|. +++.+|.+|+|+|+..+ . .|..+.. ....+.++|.+|++++.|
T Consensus 8 ~~~~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y 85 (117)
T 1uem_A 8 KNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIY 85 (117)
T ss_dssp SCCCSCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEE
T ss_pred ccCCCCCCccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEccc-ccCcCEEEECCCCCCCEE
Confidence 345678899999999999999999999999986 77788999999998864 3 6766543 346889999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCcceEec
Q psy7039 84 QFQVRAVNAAGPGEASKPTAPIVAK 108 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~~~~~~~~~ 108 (516)
.|+|+|.|..|.+.++.....+...
T Consensus 86 ~frV~A~n~~G~s~~S~~~~~v~t~ 110 (117)
T 1uem_A 86 LFMVRAINPQGLSDPSPMSDPVRTQ 110 (117)
T ss_dssp EEEEEEEETTEEEEECCCCCCEECC
T ss_pred EEEEEEECCCccCCCcCCCccEEcc
Confidence 9999999999988877766645543
No 343
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.32 E-value=8.9e-12 Score=101.88 Aligned_cols=96 Identities=33% Similarity=0.590 Sum_probs=81.5
Q ss_pred CCCCCCCCcce--EEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe-EEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 10 PFDEPGKPTDL--EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-VVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 10 ~~~~p~~p~~l--~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..++|++|.++ .+..++.+++.|+|.+| .+++++|.+|.|+++..++.|..+ .......++++|.+|.+++.|.|+
T Consensus 14 v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~fr 92 (121)
T 1wf5_A 14 VRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFR 92 (121)
T ss_dssp CCCCCCCCSSCEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEE
T ss_pred EeeCCccCCCcceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCCCCceEeEcccCCCccEEEECCcCCCCEEEEE
Confidence 34679999999 88888999999999998 577789999999999877788876 345567889999999999999999
Q ss_pred EEEecCCCCCCCCCCCcceE
Q psy7039 87 VRAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~~~~ 106 (516)
|+|.|..|.+.++.....+.
T Consensus 93 V~A~n~~G~s~~S~~~~~~~ 112 (121)
T 1wf5_A 93 LCAVNDVGKGQFSKDTERVS 112 (121)
T ss_dssp EEEEESSCEEEECCCCSCEE
T ss_pred EEEEcCCccCCCcCCcceeE
Confidence 99999999988776654343
No 344
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.32 E-value=2.6e-11 Score=115.61 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=103.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--eee---------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QVC--------------- 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~~--------------- 181 (516)
+..+.+.+|+++.|.|.+. +.+ .+.+.|++.. ..+
T Consensus 29 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 82 (291)
T 2gki_A 29 SGPELVKPGASVKMSCKAS--------------------------GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKY 82 (291)
T ss_dssp CCCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEE
T ss_pred CCcEEecCCCCEEEEEecc--------------------------CCcccccEEEEEEECCCCCcEEEEEEecCCCcccc
Confidence 3468899999999999998 554 4677887732 111
Q ss_pred --ccCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCC-Cce------EEEEEeec-----------------eee
Q psy7039 182 --QIGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNL-GTA------TASAHVTG-----------------TEF 233 (516)
Q Consensus 182 --~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~-g~~------~~~~~~~~-----------------~~~ 233 (516)
....|+.+.. .....+|.|.+++.+|+|.|.|.+.+.. |.. ...+.+.. ..+
T Consensus 83 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v 162 (291)
T 2gki_A 83 NEKFKGKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVM 162 (291)
T ss_dssp CGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCE
T ss_pred CcccCCCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceE
Confidence 0124555443 2346789999999999999999999864 111 11222222 001
Q ss_pred ----eeccccCCceEEEEEEEEccCCCCCc------eecccccc-c------------------ceEEEEEecceeeEEE
Q psy7039 234 ----TDNNVHEGKAYEYRVSAVNAAGTEKP------KISLDALI-G------------------KRIKEFVTSTTASLNI 284 (516)
Q Consensus 234 ----~~~~l~~g~~~~~~~~~~~~~g~p~p------~i~W~~~~-~------------------~~~~~~~~~~~~~l~i 284 (516)
....+.+|+.+.+.|.+ .|.+.+ .+.|.+.. + .++..........|.|
T Consensus 163 ~~~p~~~~v~~G~~v~L~C~~---~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 239 (291)
T 2gki_A 163 SQSPSSLAVSAGEKVTMSCKS---SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTI 239 (291)
T ss_dssp ECSCSEEEEETTSCEEEEEEE---SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred EcCCCEEEEcCCCcEEEEEEc---CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEE
Confidence 12346789999999998 666665 89996631 1 1222222344568999
Q ss_pred ccCCCCCceEEEEEEEecC
Q psy7039 285 KNSVRKDSGIYKIEAKNDY 303 (516)
Q Consensus 285 ~~l~~~d~g~y~c~a~n~~ 303 (516)
.+++.+|+|.|+|.|.|..
T Consensus 240 ~~v~~~DsG~Y~C~a~~~~ 258 (291)
T 2gki_A 240 SSVQAEDLAVYYCKQSYYH 258 (291)
T ss_dssp SSCCGGGCEEEEEEEEETT
T ss_pred CCCCHHHCEEEEEEEccCC
Confidence 9999999999999999853
No 345
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.32 E-value=2.3e-11 Score=107.12 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=100.4
Q ss_pred cccCCceEEEEEEEEccCCCCCceeccccc-ccceE--------------EEEEecceeeEEEccCCCCCceEEEEEEEe
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKPKISLDAL-IGKRI--------------KEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~-~~~~~--------------~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n 301 (516)
....|+.+.|.|.. ...+.+.+.+.|.+. .+..+ +.. ...+++|.|.+++.+|+|.|+|.|.|
T Consensus 10 ~g~~G~sv~L~~~~-~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~-~~~ngsL~I~~v~~~DsG~Y~c~~~n 87 (182)
T 1hnf_A 10 WGALGQDINLDIPS-FQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNGTLKIKHLKTDDQDIYKVSIYD 87 (182)
T ss_dssp EEETTSCEEECCTT-CCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE-ECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred EEecCCCEEEeCCc-ccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE-ECCCCCEEECCCChhhCEEEEEEEEe
Confidence 34567777777732 112345778899651 11111 111 12456999999999999999999999
Q ss_pred cCCCcc--eeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEE
Q psy7039 302 DYGIDM--ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379 (516)
Q Consensus 302 ~~g~~~--~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~ 379 (516)
..|... ..+.|.|......|. +.. .+..+.|.|.+
T Consensus 88 ~~g~~~~~~~~~L~V~~~~~~P~------------------------------------------i~~-~~~~v~L~C~~ 124 (182)
T 1hnf_A 88 TKGKNVLEKIFDLKIQERVSKPK------------------------------------------ISW-TCINTTLTCEV 124 (182)
T ss_dssp TTSCEEEEEEEEEEEECCCCCCE------------------------------------------EEE-ETTTTEEEEEC
T ss_pred CCCceeEEEEEEEEEcCcCCCCE------------------------------------------EEE-ccCcEEEEeEc
Confidence 888753 456677765432221 111 23368899999
Q ss_pred eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEE
Q psy7039 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445 (516)
Q Consensus 380 ~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~ 445 (516)
.+.|.+.+.|++++..+ .. ... .+.+.. .. .|.|.|+|.|.|..|..+....+.
T Consensus 125 ~~~p~~~~~W~~~g~~l-~~-------~~~--~i~~~~-~~-~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 125 MNGTDPELNLYQDGKHL-KL-------SQR--VITHKW-TT-SLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp SSCSSCEEEEEESSCEE-EE-------ESS--CEEEEC-CS-CEEEEEEEEEECSSCEEEEEEEEE
T ss_pred cCCCCCEEEEEECCEEC-CC-------CCc--EEEEec-cc-CCCcEEEEEEEeCCCCcEEcceec
Confidence 99999999999999776 11 111 122322 35 899999999999999877766553
No 346
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.32 E-value=2.2e-11 Score=110.96 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=102.5
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 60 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATS--------------------------GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTT 60 (222)
T ss_dssp ECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCE
T ss_pred CCceeEcCCCEEEEEEEec--------------------------CccCCCCcEEEEEECCCCCcEEEEEEccCCccccc
Confidence 4457789999999999998 543 5567776632 11 0
Q ss_pred --c--cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC-----c--eEEEEEeec-----eeee----ecccc
Q psy7039 182 --Q--IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG-----T--ATASAHVTG-----TEFT----DNNVH 239 (516)
Q Consensus 182 --~--~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g-----~--~~~~~~~~~-----~~~~----~~~l~ 239 (516)
. ...|+.+... ....+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. ..+. ...+.
T Consensus 61 ~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~ 140 (222)
T 1q9r_B 61 EYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQ 140 (222)
T ss_dssp EECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCC
T ss_pred ccCcccCCceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccccccc
Confidence 0 1246665543 3467999999999999999999998653 1 111222221 1111 12345
Q ss_pred CCceEEEEEEEEccCCC-CCc-eecccccccc----eEEEEEec----ceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 240 EGKAYEYRVSAVNAAGT-EKP-KISLDALIGK----RIKEFVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 240 ~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~----~~~~~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
+|..+.+.|.+ .|. |.| .+.|.+.... ........ ....|.|.++...| |.|+|.|.|..|.....
T Consensus 141 ~g~~v~L~C~~---~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~ 216 (222)
T 1q9r_B 141 TNSMVTLGCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 216 (222)
T ss_dssp CSSEEEEEEEE---EEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCCcEEEEEEE---ccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEE
Confidence 79999999998 553 777 9999763211 11111011 12468899998889 99999999998875433
No 347
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=99.31 E-value=1.7e-11 Score=111.20 Aligned_cols=85 Identities=20% Similarity=0.157 Sum_probs=68.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC-cCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL-IEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~~~a 89 (516)
..+|++|.+|++...+.+++.|+|.+|...+ . +.+|.|+|+..++.+..+.......+++.|.+| .+++.|.|+|.|
T Consensus 5 g~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~-~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A 82 (215)
T 1bqu_A 5 GLPPEKPKNLSCIVNEGKKMRCEWDGGRETH-L-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 82 (215)
T ss_dssp CCCCCCCEEEEEEEETTSCCEEEEECCSCCS-S-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred CCCCCCCEeeEeEECCCCcEEEEcCCCCCCC-C-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEE
Confidence 4679999999999888899999999986443 3 479999998765433333334456789999999 999999999999
Q ss_pred ecCCCCCC
Q psy7039 90 VNAAGPGE 97 (516)
Q Consensus 90 ~n~~g~~~ 97 (516)
.|..|.+.
T Consensus 83 ~n~~G~~~ 90 (215)
T 1bqu_A 83 ENALGKVT 90 (215)
T ss_dssp EETTEEEE
T ss_pred EecccCcc
Confidence 99988765
No 348
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.31 E-value=7.1e-12 Score=100.75 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=79.4
Q ss_pred eeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 5 ~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
|.++++++.|++|.++++..+++++|.|+|.+|. +.++.|.+|+|+|+..+.............+++.|.+|.++..|.
T Consensus 2 v~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 80 (111)
T 1x5l_A 2 SSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPE-QPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYV 80 (111)
T ss_dssp CCCCCSCCCCCCCCCEECSCBCSSCEEEEECCCS-CCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEE
T ss_pred ceEEcCCCCCCCCceEEEEEcCCCEEEEEECCCC-CCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCEEE
Confidence 5788999999999999999999999999999985 445679999999998653111122234568899999999999999
Q ss_pred EEEEEecCCCCCCCCCCC
Q psy7039 85 FQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~ 102 (516)
|+|+|.|..|.+.++...
T Consensus 81 ~~V~A~n~~G~g~~S~~~ 98 (111)
T 1x5l_A 81 FQVRARTSAGCGRFSQAM 98 (111)
T ss_dssp ECEEEEETTEECCCCCCE
T ss_pred EEEEEEeCCcCCCCcccE
Confidence 999999999988776543
No 349
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.31 E-value=2.9e-11 Score=109.90 Aligned_cols=158 Identities=11% Similarity=0.091 Sum_probs=108.2
Q ss_pred CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCC
Q psy7039 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP 95 (516)
Q Consensus 16 ~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~ 95 (516)
.|.++.+ .....+.|.+.... .+ ...+.|...+.. + .......|.|.+++..|.|.|+|.|.|..|.
T Consensus 24 ~p~~~~v--~~G~~v~L~C~~~~----~p--~~~v~W~~~~~~---~--~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 90 (218)
T 3k0w_A 24 NPESKAV--LAGQFVKLCCRATG----HP--FVQYQWFKMNKE---I--PNGNTSELIFNAVHVKDAGFYVCRVNNNFTF 90 (218)
T ss_dssp CCCCEEE--ETTSBEEEECEETT----TT--SSEEEEEETTEE---C--TTCCSSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred CCCCeEE--eCCCcEEEEeeecC----CC--CCEEEEEECCEE---C--CCCCCCEEEEccCChhhCeEeEEEEEcCCCC
Confidence 4445444 35677888887621 11 123455544320 0 1124678999999999999999999997664
Q ss_pred CCCCCCCcceEecc----------CCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeec
Q psy7039 96 GEASKPTAPIVAKP----------KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKL 165 (516)
Q Consensus 96 ~~~s~~~~~~~~~~----------~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (516)
.......+.+.... ...+|.+. ..+....+.+|+.+.|.|.+.
T Consensus 91 ~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~v~L~C~~~-------------------------- 143 (218)
T 3k0w_A 91 EFSQWSQLDVCDIPESFQRSVDGVSESKLQIC-VEPTSQKLMPGSTLVLQCVAV-------------------------- 143 (218)
T ss_dssp EECCCEEEEEECCCGGGCTTCCSBCCSSCEEE-ECCCCEEECTTCCEEEECEEE--------------------------
T ss_pred ceeeEEEEEEEccCcccccccccccCCCceEE-ECCCceeecCCCcEEEEEEec--------------------------
Confidence 32222222222111 11224454 455668899999999999999
Q ss_pred CcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce
Q psy7039 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222 (516)
Q Consensus 166 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~ 222 (516)
+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 144 g~p~~~v~W~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 191 (218)
T 3k0w_A 144 GSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191 (218)
T ss_dssp BSSCCEEEEEETTEECTTC---------CSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred ccCCCeEEEEECCEECCCC---------CCCEEEEeecChhcCEEEEEEEEcCCCCc
Confidence 9999999999999887643 23589999999999999999999977753
No 350
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.31 E-value=8.4e-12 Score=102.14 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=81.0
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEE---eE-EeecCCcEEEe
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEK---AV-VVPAGETSCTV 74 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~---~~-~~~~~~~~~~i 74 (516)
|..+.+++.++.|. +|.++++..++.+++.|+|.+|..+ .++.|.+|.|+|+..+. .|.. .. ......+++.|
T Consensus 3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (122)
T 1va9_A 3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 82 (122)
T ss_dssp CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEE
T ss_pred CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEe
Confidence 56788999999996 8999999999999999999998642 45679999999998664 3321 11 12234689999
Q ss_pred CCCcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 75 PGLIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 75 ~~l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.+|++++.|.|+|+|.|..|.+.++...
T Consensus 83 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~ 110 (122)
T 1va9_A 83 DNLKKFAQYGVVVQAFNRAGTGPSSSEI 110 (122)
T ss_dssp ESCCSSCCEEEEEEEEETTEECCCCCCE
T ss_pred CCCCCCCEEEEEEEEEcCCCCCCCccCE
Confidence 9999999999999999999988766543
No 351
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.31 E-value=3.4e-11 Score=114.08 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=107.0
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC--e---------------ee
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING--Q---------------VC 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~--~---------------~~ 181 (516)
+..+.+.+|+++.|.|.+. +. +...+.|++.. . ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~ 60 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSS--------------------------EVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNY 60 (280)
T ss_dssp CCCCEECTTCCEEEEEEEC--------------------------CSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEE
T ss_pred CCCEEECCCCcEEEEEEee--------------------------ccCCCCeEEEEEEeCCCCCCEEEEEEeccCCcccc
Confidence 5668899999999999998 32 33455665421 0 00
Q ss_pred --ccCCceEEe--ecCCeeEEEeccCCCCCCeeEEEEEEcC------------CCceEEEEEeec---------------
Q psy7039 182 --QIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENN------------LGTATASAHVTG--------------- 230 (516)
Q Consensus 182 --~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~Y~c~~~~~------------~g~~~~~~~~~~--------------- 230 (516)
....|+.+. ......+|.|.+++.+|+|.|.|.+.+. .+.. ..+.+..
T Consensus 61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~-~~L~V~~~~~~~~~~~~~~~~~ 139 (280)
T 3fku_X 61 AQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQG-TLVTVSSGGGGSGGGGSGGGGI 139 (280)
T ss_dssp CGGGTTTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCC-CEEEECC--------------C
T ss_pred CcccCCcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCC-EEEEEcCCCCccCCCCCCceEe
Confidence 112466665 3345579999999999999999999886 1111 1112211
Q ss_pred -eee---eeccccCCceEEEEEEEEccCC-CC-Cceecccccc-------------------cceEEEEEecceeeEEEc
Q psy7039 231 -TEF---TDNNVHEGKAYEYRVSAVNAAG-TE-KPKISLDALI-------------------GKRIKEFVTSTTASLNIK 285 (516)
Q Consensus 231 -~~~---~~~~l~~g~~~~~~~~~~~~~g-~p-~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~ 285 (516)
..+ ....+.+|+.+.|.|.+ .+ .+ .+.+.|.+.. ..++..........|.|.
T Consensus 140 ~~~v~~~p~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 216 (280)
T 3fku_X 140 QPGLTQPPSVSKGLRQTATLTCTG---NSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTIT 216 (280)
T ss_dssp CCSBBCCSEEEECTTCCEEEEEEC---CCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEEC
T ss_pred eeEEEeCCcEEEecCCCEEEEEEe---cCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEEC
Confidence 001 11457789999999998 44 33 4788895411 123344445566789999
Q ss_pred cCCCCCceEEEEEEEecCCC---cceeEEEEEecCC
Q psy7039 286 NSVRKDSGIYKIEAKNDYGI---DMADIEVVVVSKP 318 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p 318 (516)
+++.+|+|.|+|.+.|..+. ......|.|...+
T Consensus 217 ~v~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~ 252 (280)
T 3fku_X 217 GLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQP 252 (280)
T ss_dssp SCCGGGCSEEEEEEEETTTTEEEEBCCCEEEEC---
T ss_pred CCCHHHCEEEEEEEecCCCCceEECCCEEEEECCCC
Confidence 99999999999999987622 1223456665444
No 352
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.31 E-value=1.6e-11 Score=110.95 Aligned_cols=157 Identities=11% Similarity=0.136 Sum_probs=101.7
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeC--Ceeec-------------
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSIN--GQVCQ------------- 182 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~--~~~~~------------- 182 (516)
.+..+.+.+|+++.|.|.+. +.+ .+.+.|+++ +....
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~ 59 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVT--------------------------GDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYY 59 (210)
T ss_dssp EESCSEECTTSCEEEEEEEE--------------------------SSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEE
T ss_pred cCCCEEecCCCcEEEEEEEe--------------------------cccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEE
Confidence 34557889999999999998 543 367777763 21110
Q ss_pred ---cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCC--CceEEEEEeec-----eeee----eccccCCceEEE
Q psy7039 183 ---IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNL--GTATASAHVTG-----TEFT----DNNVHEGKAYEY 246 (516)
Q Consensus 183 ---~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~--g~~~~~~~~~~-----~~~~----~~~l~~g~~~~~ 246 (516)
...|+.+.. .+...+|.|.+++.+|+|.|.|.+.+.. +.. ..+.+.. ..+. ...+.+|..+.+
T Consensus 60 ~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~-~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L 138 (210)
T 3d9a_H 60 NPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQG-TLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL 138 (210)
T ss_dssp CGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSSCBCCC-EEEEECCCCCBCCEEEEECCTTSCCCSSEEEE
T ss_pred CcccCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCcccccc-eEEEeccCCCCCCEEEEecCCcccccCCcEEE
Confidence 135666553 2345699999999999999999998853 221 1222211 1111 123568999999
Q ss_pred EEEEEccCCC-CCc-eecccccccce--E---EEEEe---cceeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 247 RVSAVNAAGT-EKP-KISLDALIGKR--I---KEFVT---STTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 247 ~~~~~~~~g~-p~p-~i~W~~~~~~~--~---~~~~~---~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.|.+ .|. |.| .+.|.+..... . ..... .....|.|..+..++ |.|+|.|.|..|...
T Consensus 139 ~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 139 GCLV---KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp EEEE---EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred EEEE---eeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 9998 454 777 99997632210 0 00000 123468888888766 999999999987754
No 353
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.31 E-value=2.9e-10 Score=108.14 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=123.9
Q ss_pred EecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC-CCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG-PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 275 ~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~-~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
.......+.|.+|.+...|.|++.|.|..|...... ..+...+. .+...+.+...+.+++.|+|.+|.. .+.+|
T Consensus 69 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p~~----~~~~Y 143 (290)
T 3r8q_A 69 LAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLENVSPPRRARVTDATETTITISWRTKTE----TITGF 143 (290)
T ss_dssp ECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEECCCCCCCCEEEEEEEECSSCEEEEEECCSC----CCCEE
T ss_pred cCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc-eeEecCCCCCCCceeEEEEcCCCeEEEEEeCCCC----cccEE
Confidence 345567899999999999999999999888765442 33333221 2222277788899999999998742 34555
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEc
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n 433 (516)
. |.|...+. ..............+.|.+|.+ ...|.|++.|.|
T Consensus 144 ~--------------------------------v~~~~~~~----~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n 186 (290)
T 3r8q_A 144 Q--------------------------------VDAVPANG----QTPIQRTIKPDVRSYTITGLQP-GTDYKIYLYTLN 186 (290)
T ss_dssp E--------------------------------EEEEESSS----CCCEEEEECTTCSEEEECSCCT-TCEEEEEEEEEE
T ss_pred E--------------------------------EEEEECCC----CcceEEecCCCccEEEECCCCC-CCEEEEEEEEEe
Confidence 1 22222211 1112233334455789999999 999999999999
Q ss_pred CCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 434 TVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..|.+.. ..+.....|.+| ..+.+..++.+++.|+|++|. +.+.+|.|+|+..+...
T Consensus 187 ~~g~s~~-~~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~ 243 (290)
T 3r8q_A 187 DNARSSP-VVIDASTAIDAP-SNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPP 243 (290)
T ss_dssp TTEECCC-EEEEEECCCCCC-EEEEEEEEETTEEEEEEECCS----SCCCEEEEEEECTTSCC
T ss_pred CCcccCC-EEEEecCCCCCC-CccEEEeeCCCEEEEEEeCCC----CcccEEEEEEEeCCCCc
Confidence 9887543 455666778887 788998899999999999875 46999999999876544
No 354
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.31 E-value=1.4e-12 Score=117.50 Aligned_cols=147 Identities=13% Similarity=0.065 Sum_probs=97.4
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCC
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 205 (516)
+.+|+++.|.|.+ |.+.+.|++++..+... .....+|.|.+++.
T Consensus 15 ~~~G~~v~L~C~~-----------------------------p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~ 58 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-----------------------------EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAK 58 (204)
T ss_dssp CCSSSEEEEEECS-----------------------------CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGG
T ss_pred ecCCCeEEEEEcC-----------------------------CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCc
Confidence 3589999999964 46789999999877532 12346899999999
Q ss_pred CCCeeEEEEEEcCCCceEEEEEee--------------------------------ceee--eecccc-CCceEEEEEEE
Q psy7039 206 SDTGHYSLTLENNLGTATASAHVT--------------------------------GTEF--TDNNVH-EGKAYEYRVSA 250 (516)
Q Consensus 206 ~d~g~Y~c~~~~~~g~~~~~~~~~--------------------------------~~~~--~~~~l~-~g~~~~~~~~~ 250 (516)
+|+|.|+|.+.+..+ ....+.+. ...+ ....+. +|+.+.|.|.
T Consensus 59 ~DsG~Y~C~~~~~~s-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~- 136 (204)
T 1sy6_A 59 DPRGMYQCKGSQNKS-KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP- 136 (204)
T ss_dssp CCEEEEEEESSSSCC-CCEEEEEEC------------------------------------CCCCEEEEETTEEEEECS-
T ss_pred CCCEEEEEEecCCCC-eeEEEEEEEeccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC-
Confidence 999999999754322 21222211 0000 011233 7899999985
Q ss_pred EccCCCCCceecccccccceE----EEEEecceeeEEEccC-CCCCceEEEEEEEecCCCc-ceeEEEEE
Q psy7039 251 VNAAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNS-VRKDSGIYKIEAKNDYGID-MADIEVVV 314 (516)
Q Consensus 251 ~~~~g~p~p~i~W~~~~~~~~----~~~~~~~~~~l~i~~l-~~~d~g~y~c~a~n~~g~~-~~~~~l~v 314 (516)
|.|.|.+.|.+....-. ..........|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+
T Consensus 137 ----g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 137 ----QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp ----CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred ----CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 67889999965221100 0000113678999999 9999999999999999863 44444443
No 355
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.31 E-value=1.5e-11 Score=111.87 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=105.4
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-------------------------ceEEEEEe--cceeeEEEc
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-------------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-------------------------~~~~~~~~--~~~~~l~i~ 285 (516)
..+.+|..+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.
T Consensus 10 ~~~~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 10 GLVQPGGSMKLSCVA---SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred EEEcCCCeEEEEEEE---cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 356789999999998 4444 6889996521 1 12222221 234589999
Q ss_pred cCCCCCceEEEEEEEecCCCc---ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYGID---MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g~~---~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
+++.+|+|.|+|.+.|..+.. .....|.|...+.. .|.... . .
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i~~-----------~---------------------~ 132 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTT--APSVYP-----------L---------------------V 132 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCB--CCEEEE-----------E---------------------C
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCC--CCeEEE-----------c---------------------c
Confidence 999999999999999875421 12356666532211 110000 0 0
Q ss_pred ccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecC---CC-----CceEEEEcCCeEEEEEcCceecCCceEEEEEEE
Q psy7039 363 RDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVS---PD-----GRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 363 ~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~---~~-----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
....+..|+.+.|.|.+.|. |.| .+.|++++.... .. ..+.. .+.|.|..+.. ++ |.|+|.|.
T Consensus 133 ~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~-~~-g~Y~C~a~ 205 (220)
T 1pz5_B 133 PGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSL-----SSLVTVPSSTW-PS-QTVICNVA 205 (220)
T ss_dssp CCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEE-----EEEEEECGGGT-TT-SCCEEEEE
T ss_pred cccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEE-----EEEEEEcchhc-CC-ceEEEEEE
Confidence 01123578999999999998 888 999999886311 00 11111 25789988887 77 99999999
Q ss_pred cCCCceeEEE
Q psy7039 433 NTVGSDSASC 442 (516)
Q Consensus 433 n~~G~~s~s~ 442 (516)
|..|....++
T Consensus 206 n~~~~~~~~~ 215 (220)
T 1pz5_B 206 HPASKVDLIK 215 (220)
T ss_dssp EGGGTEEEEE
T ss_pred ECCccEeeee
Confidence 9999755443
No 356
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-11 Score=99.62 Aligned_cols=99 Identities=23% Similarity=0.388 Sum_probs=82.8
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
+..+.+++..+.|. +|.++++..+++++|.|+|.+|..+ .++.|.+|.|+|+..+. .|... .....+++.|.+|+
T Consensus 16 s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~ 93 (124)
T 2ed9_A 16 TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMET--LEPNNLWYLFTGLE 93 (124)
T ss_dssp CCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEE--ECSSCSEEEEECCC
T ss_pred CCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEE--ecCCcCEEEEcCCC
Confidence 45677888888887 8999999999999999999998642 56779999999998766 55443 45678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+++.|.|+++|.|..|.+.++...
T Consensus 94 p~t~Y~~~V~A~n~~G~g~~S~~~ 117 (124)
T 2ed9_A 94 KGSQYSFQVSAMTVNGTGPPSNWY 117 (124)
T ss_dssp SSCEEEECEEEECSSCBCCCCCCE
T ss_pred CCCEEEEEEEEEcCCccCCCCCCE
Confidence 999999999999999988776543
No 357
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.31 E-value=3e-11 Score=115.12 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=114.0
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEE--ecceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~l 287 (516)
..+.+|+.+.+.|.+ .|.+ .+.+.|.+.. + .++.+.. ......|.|.++
T Consensus 32 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 108 (291)
T 2gki_A 32 ELVKPGASVKMSCKA---SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL 108 (291)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred EEecCCCCEEEEEec---cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence 356789999999997 4544 5788996521 1 1111111 123568999999
Q ss_pred CCCCceEEEEEEEecC-CCc----ceeEEEEEecC--------CCCC-CCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 288 VRKDSGIYKIEAKNDY-GID----MADIEVVVVSK--------PGPP-TGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~-g~~----~~~~~l~v~~~--------p~~p-~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
+.+|+|.|.|.+.|.. |.. .....|.|... ..++ ..+..+.
T Consensus 109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~------------------------- 163 (291)
T 2gki_A 109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMS------------------------- 163 (291)
T ss_dssp CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEE-------------------------
T ss_pred CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEE-------------------------
Confidence 9999999999999874 211 12235555541 0000 0000000
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecCC------ceEEEECC--eecC------------CCCceEEEEcCCeEEE
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKP------TPIWTVNG--DEVS------------PDGRIKFETSENQTIY 413 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~------~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l 413 (516)
..+....+.+|+.+.|.|.+.+.+.+ .+.|+++. ..+. ...++..........|
T Consensus 164 ------~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L 237 (291)
T 2gki_A 164 ------QSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTL 237 (291)
T ss_dssp ------CSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred ------cCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEE
Confidence 12345678999999999999888765 89999863 2110 1356666555566789
Q ss_pred EEcCceecCCceEEEEEEEcCCCce-eEEEEEEEecC
Q psy7039 414 RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDK 449 (516)
Q Consensus 414 ~i~~~~~~~~~g~y~c~a~n~~G~~-s~s~~l~v~~~ 449 (516)
+|.++.. .|+|.|.|.|.|..... ..-..|.|...
T Consensus 238 ~I~~v~~-~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~ 273 (291)
T 2gki_A 238 TISSVQA-EDLAVYYCKQSYYHMYTFGSGTKLEIKHH 273 (291)
T ss_dssp EESSCCG-GGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred EECCCCH-HHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence 9999999 99999999999864321 11245566543
No 358
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.30 E-value=3.7e-11 Score=111.98 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=83.7
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC----CCcceeEEEEEecC-CCCCCCCceeeeccCCeeEEEecCCCCCCCCceee
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY----GIDMADIEVVVVSK-PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~~-p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~ 352 (516)
....|.|.+++.+|+|.|.|.+.+.. +.......+.|... +.+|. +..
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~--i~~------------------------- 129 (253)
T 3liz_H 77 NTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPS--VYP------------------------- 129 (253)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCE--EEE-------------------------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCe--EEE-------------------------
Confidence 45679999999999999999998762 22233356666532 22210 000
Q ss_pred ccccccccccccEEEEcCCeEEEEEEEee-ecCC-ceEEEECCeecCC--------CCceEEEEcCCeEEEEEcCceecC
Q psy7039 353 APKITSDLSIRDMTVLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSP--------DGRIKFETSENQTIYRNKSAKRAT 422 (516)
Q Consensus 353 y~~~~~~~~~~~~~v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~--------~~~~~~~~~~~~~~l~i~~~~~~~ 422 (516)
......+..|+.+.|.|.+.+ .|.+ .+.|++++..+.. ...|... +.|.|..... +
T Consensus 130 --------~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~~~-~ 195 (253)
T 3liz_H 130 --------LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS-----SSVTVPSSTW-P 195 (253)
T ss_dssp --------ECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE-----EEEEEETTST-T
T ss_pred --------ecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEE-----EEEEEcHHHC-C
Confidence 011223457999999999998 6666 8999998863311 1222221 4689999888 8
Q ss_pred CceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 423 DSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 423 ~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
| |.|+|.|.|..+.......+.+.
T Consensus 196 d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 196 S-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp T-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred C-ceEEEEEEECCCCcceEEEecCc
Confidence 8 99999999999887776666655
No 359
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.30 E-value=2.9e-11 Score=113.74 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=104.3
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--ee---ec------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QV---CQ------ 182 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~---~~------ 182 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++.. .. +.
T Consensus 20 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~ 73 (268)
T 1x9q_A 20 QTPLSLPVSLGDQASISCRSS--------------------------QSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNR 73 (268)
T ss_dssp EECSEECCCTTCCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred eeCCeEEecCCCCEEEEeEec--------------------------CCcccccCCceEEEEEECCCCCCEEEEEecCCC
Confidence 445667889999999999998 555 4678888742 11 10
Q ss_pred ---cCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec--------------------------
Q psy7039 183 ---IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG-------------------------- 230 (516)
Q Consensus 183 ---~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~-------------------------- 230 (516)
...|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+..
T Consensus 74 ~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v 153 (268)
T 1x9q_A 74 VSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGV 153 (268)
T ss_dssp CTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGC
T ss_pred CCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccce
Confidence 13567666556677999999999999999999988643211 1111111
Q ss_pred --eeeeeccccCCceEEEEEEEEccCCCC--Cceecccccc-cc-------------------------eEEEEEe--cc
Q psy7039 231 --TEFTDNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-GK-------------------------RIKEFVT--ST 278 (516)
Q Consensus 231 --~~~~~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~~-------------------------~~~~~~~--~~ 278 (516)
.......+.+|+.+.|.|.+ .|.+ .+.+.|.+.. +. ++.+... ..
T Consensus 154 ~~~~~~~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 230 (268)
T 1x9q_A 154 KLDETGGGLVQPGGAMKLSCVT---SGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKS 230 (268)
T ss_dssp EEEEECCEEECTTCCEEEEEEE---ESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGT
T ss_pred EEECCCceEecCCCcEEEEEEe---cCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCC
Confidence 00113457789999999998 4544 3789996521 11 1222111 12
Q ss_pred eeeEEEccCCCCCceEEEEEEEec
Q psy7039 279 TASLNIKNSVRKDSGIYKIEAKND 302 (516)
Q Consensus 279 ~~~l~i~~l~~~d~g~y~c~a~n~ 302 (516)
...|.|.+++.+|+|.|+|.+.+.
T Consensus 231 ~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 231 SVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEEECCCCHHHCEEEEEEEccC
Confidence 468999999999999999999874
No 360
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.30 E-value=6.2e-12 Score=110.72 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=100.5
Q ss_pred ccccCCceEEEEEEEEccCC-CCCceecccccccceE------------------EEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAG-TEKPKISLDALIGKRI------------------KEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g-~p~p~i~W~~~~~~~~------------------~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.|.|.+ .+ .+.+.+.|.+.....+ +.......+.|.|.+++..|+|.|+
T Consensus 9 v~v~~G~~vtL~c~~---~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 9 VNAITGSNVTLTILK---HPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp EEEETTSCEEECCCS---SCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred EEEEeCCCEEEeCCC---CCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 345689999999875 23 3467899965211110 1112245678999999999999999
Q ss_pred EEEEecCCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEE
Q psy7039 297 IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376 (516)
Q Consensus 297 c~a~n~~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~ 376 (516)
|.+.+.. .....+.|.|..++..|. + ...+..+.|.
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~~~P~------------------------------------------i-~~~~~~v~L~ 121 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMVSKPM------------------------------------------I-YWECSNATLT 121 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCCCCCE------------------------------------------E-EEEGGGTEEE
T ss_pred EEEEcCC-eEEEEEEEEEECCCCCCE------------------------------------------E-EecCCCEEEE
Confidence 9998766 555667777766433321 1 1134568999
Q ss_pred EEE-eeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEE
Q psy7039 377 VPF-SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443 (516)
Q Consensus 377 C~~-~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~ 443 (516)
|.+ .| |.+.+.|++++..+. .. ....+.+.. . .|.|.|+|.|.|..|.......
T Consensus 122 C~~~~g-p~p~i~W~~~~~~l~-------~~--~~~~l~~~~--~-~d~g~Y~C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 122 CEVLEG-TDVELKLYQGKEHLR-------SL--RQKTMSYQW--T-NLRAPFKCKAVNRVSQESEMEV 176 (180)
T ss_dssp EECSSC-TTCEEEEEETTEEEE-------EE--SSSEEEEEC--S-CCSSCEEEEEEETTEEEEEEEC
T ss_pred EEeCCC-CCCEEEEEECCeECc-------CC--CCCEEEEEE--h-hcCccEEEEEecCcCcccccee
Confidence 999 56 889999999997763 11 112455522 5 8999999999999987655443
No 361
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.30 E-value=2.5e-10 Score=105.57 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=82.8
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCC-C------cceeEEEEEecCCC----CCCCCceeeeccCCeeEEEecCCCCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYG-I------DMADIEVVVVSKPG----PPTGPIDYTTVTPESVSMSWKPPVDDG 346 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g-~------~~~~~~l~v~~~p~----~p~~p~~~~~~~~~~~~l~W~~p~~~~ 346 (516)
....|.|.+++.+|+|.|.|.+.+... . ......|.|...+. +|...+
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v--------------------- 136 (242)
T 1hxm_B 78 STSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTI--------------------- 136 (242)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCC---------------------
T ss_pred cEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceE---------------------
Confidence 356899999999999999999998631 1 11235677765432 111000
Q ss_pred CCceeeccccccccccccEEEEcCCeEEEEEEEeee-cC-CceEEEECCe-ecCCCC-ceEEEEcCC---eEEEEEcCce
Q psy7039 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PK-PTPIWTVNGD-EVSPDG-RIKFETSEN---QTIYRNKSAK 419 (516)
Q Consensus 347 ~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~-~~i~W~~~~~-~l~~~~-~~~~~~~~~---~~~l~i~~~~ 419 (516)
..+....+..|+.+.|.|.+.|. |. +.+.|++++. .+.... .......+. .+.|.|....
T Consensus 137 -------------~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~ 203 (242)
T 1hxm_B 137 -------------FLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKS 203 (242)
T ss_dssp -------------CCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGG
T ss_pred -------------ECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEcccc
Confidence 00111123468899999999987 54 5899999986 453221 000111111 1468887664
Q ss_pred ecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 420 RATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 420 ~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
. + |.|+|.|.|..+.......+.+
T Consensus 204 ~--~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 204 L--D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp G--G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred C--C-CEEEEEEEeCCCCCCceeEeec
Confidence 3 3 9999999999988766666655
No 362
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.30 E-value=8e-12 Score=110.49 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=95.3
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccC-cccceEEecCCeEEEEEeeeeccccccC
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRS-TLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
..+|.|.+++..|.|.|+|.+.+..+..... ....+.+. .+|.+... ......+.+|+.+.|.|.+.
T Consensus 56 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~v~l~C~~~-------- 123 (189)
T 2v5t_A 56 NNNLQILNINKSDEGIYRCEGRVEARGEIDF-RDIIVIVN---VPPAISMPQKSFNATAERGEEMTFSCRAS-------- 123 (189)
T ss_dssp TSCEEETTCCGGGCEEEEEEEEETTTTEEEE-EEEEEEEE---EEEEEECSCCEEEEETTSCCCEEEECEEE--------
T ss_pred CCCEEEeeCCHhHCcEEEEEEEEcCCCceEE-EEEEEEec---CCCCcccccccccccccCCCcEEEEEEEc--------
Confidence 4579999999999999999999876432211 11122221 23444311 22246678899999999999
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....++.+. .....|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 124 ------------------g~p~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 183 (189)
T 2v5t_A 124 ------------------GSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183 (189)
T ss_dssp ------------------EESCCEEEEEETTEECCCSSSEEEE--TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred ------------------cCCCCeEEEEECCEECcCCCcEEEe--cCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEE
Confidence 8899999999999998877666553 34568999999999999999999999988776554
Q ss_pred e
Q psy7039 228 V 228 (516)
Q Consensus 228 ~ 228 (516)
+
T Consensus 184 l 184 (189)
T 2v5t_A 184 L 184 (189)
T ss_dssp E
T ss_pred E
Confidence 3
No 363
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-11 Score=97.85 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCCCCCCCCcceEEEe--eeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEE
Q psy7039 9 NPFDEPGKPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQF 85 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~ 85 (516)
...+.|++|.+|++.. ++.++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ....+.+.|.+|++++.|.|
T Consensus 3 s~~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~ 78 (108)
T 2dm4_A 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI-HTHGLIREYIVEYSRSGSKMWASQ---RAASNFTEIKNLLVNTLYTV 78 (108)
T ss_dssp CCCCCTTSCEEEEEECCTTCSSCEEEEEECCS-CCSSCEEEEEEEEEETTCSCCEEE---EESSSEEEECSCCSSCEEEE
T ss_pred CCCCCCcCCcCeEEEEeccCCCEEEEEEcCCC-CCCCcEEEEEEEEEECCCCCeEEe---cCCccEEEeCCCCCCCEEEE
Confidence 3567899999998876 57889999999986 566779999999998766 67654 23577999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q psy7039 86 QVRAVNAAGPGEASKPT 102 (516)
Q Consensus 86 ~~~a~n~~g~~~~s~~~ 102 (516)
+|+|.|..|.+.++...
T Consensus 79 ~V~A~n~~G~g~~S~~~ 95 (108)
T 2dm4_A 79 RVAAVTSRGIGNWSDSK 95 (108)
T ss_dssp EEEEEESSCEEEECCCE
T ss_pred EEEEECCCceeCCCCCE
Confidence 99999999988776543
No 364
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.30 E-value=1.3e-11 Score=108.70 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=97.2
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecC-cCceeeEEeeC-Ceeec------------cC--
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHGWSIN-GQVCQ------------IG-- 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~i~W~~~-~~~~~------------~~-- 184 (516)
...+.+.+|+++.|.|.+. + .+.+.|.|++. +..+. ..
T Consensus 6 ~~~v~v~~G~~vtL~c~~~--------------------------~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~ 59 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKH--------------------------PLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK 59 (180)
T ss_dssp CCEEEEETTSCEEECCCSS--------------------------CCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTT
T ss_pred cceEEEEeCCCEEEeCCCC--------------------------CCCceeEEEEEecCCeEEEEEECCCCeeEcchhcC
Confidence 3457899999999999986 3 34567888773 22211 11
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceeee--eccccCCceEEEEEEEEccCCCCCceec
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFT--DNNVHEGKAYEYRVSAVNAAGTEKPKIS 262 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~~--~~~l~~g~~~~~~~~~~~~~g~p~p~i~ 262 (516)
.|+.+ .....+|.|.+++.+|+|.|+|.+.+.. .......+.+.... ..-...+..+.+.|.+. .| |.|.+.
T Consensus 60 ~R~~l--~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~--~g-p~p~i~ 133 (180)
T 2dru_A 60 DRVDL--DKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSKPMIYWECSNATLTCEVL--EG-TDVELK 133 (180)
T ss_dssp TTEEE--CTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECS--SC-TTCEEE
T ss_pred CeEEE--eCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeC--CC-CCCEEE
Confidence 34444 2345689999999999999999998765 33333333322110 00011335678888872 44 899999
Q ss_pred ccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 263 LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 263 W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
|.+.... .. ......|.+.. .+|+|.|+|.|.|..+.......
T Consensus 134 W~~~~~~-l~---~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 134 LYQGKEH-LR---SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV 176 (180)
T ss_dssp EEETTEE-EE---EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred EEECCeE-Cc---CCCCCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence 9763321 11 22344566533 78999999999999887655443
No 365
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.29 E-value=5.6e-12 Score=104.83 Aligned_cols=102 Identities=24% Similarity=0.432 Sum_probs=84.6
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCC-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCc
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISD-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLI 78 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 78 (516)
|+.+.++++.+.|. +|.++++..++.++|.|+|.+|..+ .++.|.+|+|+|+..+. .|..........++++|.+|+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 85 (132)
T 1x5h_A 6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLD 85 (132)
T ss_dssp CCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCC
T ss_pred CCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCC
Confidence 67788899999988 8899999999999999999998642 45679999999998765 444333355678999999999
Q ss_pred CCCeEEEEEEEecCCCCCCCCCCCc
Q psy7039 79 EGETYQFQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 79 ~~~~y~~~~~a~n~~g~~~~s~~~~ 103 (516)
+++.|.|+|+|.|..|.+.++....
T Consensus 86 p~t~Y~~~V~A~n~~G~g~~S~~~~ 110 (132)
T 1x5h_A 86 RGTEYNFRVAALTINGTGPATDWLS 110 (132)
T ss_dssp SSCEEEEECEEEETTEEEEECCCEE
T ss_pred CCCEEEEEEEEEcCCccCCCCcCEE
Confidence 9999999999999999887765443
No 366
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.29 E-value=2.7e-12 Score=116.99 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=110.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCc----eeccccccc------------------ceEEEEE-----ecceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKP----KISLDALIG------------------KRIKEFV-----TSTTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p----~i~W~~~~~------------------~~~~~~~-----~~~~~~l~i~~l~ 288 (516)
..+..|+.+.|.|.+.. +.+.+ .+.|.+... .+..+.. ......|.|.+++
T Consensus 9 v~~~~G~~v~L~C~~~~--~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~ 86 (221)
T 3eow_R 9 VPGFLGDSVTLPCYLQV--PNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLR 86 (221)
T ss_dssp CCCCCSSCCEEECCCCC--CSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSS
T ss_pred EEEEeCCCEEEEeeecc--CCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCC
Confidence 34668999999998732 22333 488966321 1222211 1246789999999
Q ss_pred CCCceEEEEEEEecC-CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 289 RKDSGIYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~-g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
.+|+|.|+|.+.|.. +.....+.|.|...|... +.. ... .
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~---------------~~~----------------------~~~-~- 127 (221)
T 3eow_R 87 VEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT---------------AEV----------------------QKV-Q- 127 (221)
T ss_dssp CCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEE---------------EEE----------------------ECC-C-
T ss_pred hHHCeEEEEEEEeCCCCceEEEEEEEEEECCCce---------------eec----------------------CCc-c-
Confidence 999999999999976 666666666666533221 000 000 1
Q ss_pred EcCCeE-EEEEEEe-eecCCceEEEECCeecCCCCceEEEEc---CCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 368 LAGEEF-TITVPFS-GRPKPTPIWTVNGDEVSPDGRIKFETS---ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 368 ~~g~~~-~l~C~~~-g~p~~~i~W~~~~~~l~~~~~~~~~~~---~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..|+.+ .|.|.+. +.|.+.+.|++++.............. ...+.|.|..+.. +|.|.|+|.|.|..+......
T Consensus 128 ~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~ytC~a~n~~~~~~~~~ 206 (221)
T 3eow_R 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQ-VDGKQVTCKVEHESFEKPQLL 206 (221)
T ss_dssp CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSC-CCCCCEEEEECCSCSSSCEEE
T ss_pred cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHH-HCCCeEEEEEECCCCCCCeEE
Confidence 467777 5999987 889999999987543221111000001 1235799999999 999999999999998766554
Q ss_pred EEEEecCCCCC
Q psy7039 443 KVYVVDKPSPP 453 (516)
Q Consensus 443 ~l~v~~~p~~P 453 (516)
.| .-.|..|
T Consensus 207 ~v--~~~~~~~ 215 (221)
T 3eow_R 207 TV--SLTVYYP 215 (221)
T ss_dssp EE--CCCCCC-
T ss_pred EE--EEEEEcc
Confidence 44 4445544
No 367
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.29 E-value=5.4e-11 Score=109.83 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=49.6
Q ss_pred EEcCCeEEEEEEEee-ecCC-ceEEEECCeecCCCCceE---EEEcCCe----EEEEEcCceecCC-ceEEEEEEEcCCC
Q psy7039 367 VLAGEEFTITVPFSG-RPKP-TPIWTVNGDEVSPDGRIK---FETSENQ----TIYRNKSAKRATD-SGSYTIQLVNTVG 436 (516)
Q Consensus 367 v~~g~~~~l~C~~~g-~p~~-~i~W~~~~~~l~~~~~~~---~~~~~~~----~~l~i~~~~~~~~-~g~y~c~a~n~~G 436 (516)
+..|+.+.|.|.+.| .|.+ .+.|+++|..+....... .....+. +.|.|..... .| .|.|+|.|.|...
T Consensus 134 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 134 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFW-HNPRNHFRCQVQFHGL 212 (240)
T ss_dssp HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHH-SCTTCEEEEEEEECCB
T ss_pred cccCCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHh-ccCCCEEEEEEEcCCC
Confidence 346889999999998 4555 789999998875432211 1111221 3588888888 77 7799999999865
Q ss_pred ce
Q psy7039 437 SD 438 (516)
Q Consensus 437 ~~ 438 (516)
..
T Consensus 213 ~~ 214 (240)
T 3q5y_A 213 SE 214 (240)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 368
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.29 E-value=4.1e-11 Score=112.47 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=108.8
Q ss_pred ccccCCceEEEEEEEEccCCCC------Cceecccccc-------------------cceEEEEEecceeeEEEccCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE------KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRK 290 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p------~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~ 290 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.. ..++.+........|.|.+++.+
T Consensus 15 v~v~~G~~v~L~C~~---~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 91 (264)
T 2gjj_A 15 LPVSVGEKVTMTCKS---SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE 91 (264)
T ss_dssp EEEETTCCEEEEEEE---SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEecCCCcEEEEeEc---CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence 356789999999998 6665 6789996521 12333333445679999999999
Q ss_pred CceEEEEEEEecCCC-cceeEEEEEecCCCCC----CCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 291 DSGIYKIEAKNDYGI-DMADIEVVVVSKPGPP----TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 291 d~g~y~c~a~n~~g~-~~~~~~l~v~~~p~~p----~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
|+|.|.|.+.|..+. ......|.|...|..- ..+.. .......+.+ ......
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~ 148 (264)
T 2gjj_A 92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGG-SGGGGSEVQL----------------------QQSGPE 148 (264)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC--------------------CCEE----------------------EECCCE
T ss_pred HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccc-cccccCcEEE----------------------eCCCCE
Confidence 999999999987543 1233567776553100 00000 0000000000 011224
Q ss_pred EEEcCCeEEEEEEEeeecC--CceEEEECC--ee---cC--------------CCCceEEEE--cCCeEEEEEcCceecC
Q psy7039 366 TVLAGEEFTITVPFSGRPK--PTPIWTVNG--DE---VS--------------PDGRIKFET--SENQTIYRNKSAKRAT 422 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~p~--~~i~W~~~~--~~---l~--------------~~~~~~~~~--~~~~~~l~i~~~~~~~ 422 (516)
.+.+|+.+.|.|.+.+.+. +.+.|+++. .. +. ...++.+.. ......|.|.++.. .
T Consensus 149 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~ 227 (264)
T 2gjj_A 149 VVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS-E 227 (264)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG-G
T ss_pred EEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc-c
Confidence 6889999999999988764 789999863 21 10 023444432 33567899999999 9
Q ss_pred CceEEEEEEEcC
Q psy7039 423 DSGSYTIQLVNT 434 (516)
Q Consensus 423 ~~g~y~c~a~n~ 434 (516)
|+|.|.|.|.|.
T Consensus 228 DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 228 DSADYYCVRSGN 239 (264)
T ss_dssp GCEEEEEEEECS
T ss_pred cCEEEEEEEecC
Confidence 999999999995
No 369
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.29 E-value=1.7e-11 Score=100.80 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=82.2
Q ss_pred CCcceeccCCCCCC-CCCcceEEEeeeCCeeEEEecCCCC-CCCCceeceEEEEEeCCC-Ce-------EEeEEeecCCc
Q psy7039 1 MDHSVLIKNPFDEP-GKPTDLEATDWDKDHVDLQWTPPIS-DGGSPITGYVVEMKDKTG-NW-------EKAVVVPAGET 70 (516)
Q Consensus 1 ~~~~~~~~~~~~~p-~~p~~l~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~v~~~~~~~-~~-------~~~~~~~~~~~ 70 (516)
.|+.|.+++.++.| ++|.+|++..+++++|.|+|.+|.. ..++.|.+|.|+|+..+. .+ ..........+
T Consensus 1 gS~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T 1uen_A 1 GSSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKT 80 (125)
T ss_dssp CCCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCS
T ss_pred CCccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCcc
Confidence 37889999999998 7999999999999999999999842 234579999999987654 22 12333456789
Q ss_pred EEEeCCCcCCCeEEEEEEEecCCCCCCCCCC
Q psy7039 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 71 ~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
++.|.+|++++.|.|+|+|.|..|.+..+..
T Consensus 81 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~ 111 (125)
T 1uen_A 81 HGMLPGLEPFSHYTLNVRVVNGKGEGPASPD 111 (125)
T ss_dssp EEEEESCCSSCEEEEEEEEEESSCEEEECCC
T ss_pred EEEeCCCCCCCEEEEEEEEecCCCCCCCCCC
Confidence 9999999999999999999999998766543
No 370
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.29 E-value=9.1e-12 Score=100.79 Aligned_cols=96 Identities=23% Similarity=0.388 Sum_probs=80.3
Q ss_pred CcceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCC
Q psy7039 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEG 80 (516)
Q Consensus 2 ~~~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~ 80 (516)
|+.+.+++..+.|++|.++++..++.++|.|+|.+|. + + .|.+|+|+|+..+. .|.... ....++++|.+|+++
T Consensus 6 S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~-~-~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~ 80 (115)
T 1x5z_A 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-S-D-TIANYELVYKDGEHGEEQRIT--IEPGTSYRLQGLKPN 80 (115)
T ss_dssp CCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCS-C-C-CCCEEEECBEESSSCCCBCCE--ECSSSEEEEECCCTT
T ss_pred CCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCC-C-C-CccEEEEEEEeCCCCCceEEe--cCCCcEEEECCCCCC
Confidence 5678889999999999999999999999999999984 2 2 79999999998665 553222 245799999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCC
Q psy7039 81 ETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 81 ~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
+.|.|+|+|.|..|.+.++...
T Consensus 81 t~Y~~~V~A~n~~G~g~~S~~~ 102 (115)
T 1x5z_A 81 SLYYFRLAARSPQGLGASTAEI 102 (115)
T ss_dssp CEEEECEEEECSSCEEEECCCE
T ss_pred CeEEEEEEEECCCcccCCCcCE
Confidence 9999999999999987766543
No 371
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.29 E-value=4.1e-11 Score=113.50 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=113.4
Q ss_pred eccccCCceEEEEEEEEccCCC--CCceecccccc-c-----------------------ceEEEEE--ecceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-G-----------------------KRIKEFV--TSTTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-~-----------------------~~~~~~~--~~~~~~l~i~~ 286 (516)
...+.+|+.+.|.|.+ .+. +.+.+.|.+.. + .++.+.. ......|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (280)
T 3fku_X 9 AEVKKPGSSVKVSCTS---SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS 85 (280)
T ss_dssp CCEECTTCCEEEEEEE---CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred CEEECCCCcEEEEEEe---eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 3456789999999997 443 56788886411 0 1222221 23345899999
Q ss_pred CCCCCceEEEEEEEecC---------CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccc
Q psy7039 287 SVRKDSGIYKIEAKNDY---------GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKIT 357 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~---------g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~ 357 (516)
++.+|+|.|+|.+.|.. ........|.|...+...... ...-.+.++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~---------~~~~~~~~~~-------------- 142 (280)
T 3fku_X 86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGG---------GSGGGGIQPG-------------- 142 (280)
T ss_dssp CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-----------------------CCCS--------------
T ss_pred CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCC---------CCCceEeeeE--------------
Confidence 99999999999999861 112223455554411000000 0000000000
Q ss_pred cccccccEEEEcCCeEEEEEEEee-ec-CCceEEEECC--eecC------------CCCceEEEEcCCeEEEEEcCceec
Q psy7039 358 SDLSIRDMTVLAGEEFTITVPFSG-RP-KPTPIWTVNG--DEVS------------PDGRIKFETSENQTIYRNKSAKRA 421 (516)
Q Consensus 358 ~~~~~~~~~v~~g~~~~l~C~~~g-~p-~~~i~W~~~~--~~l~------------~~~~~~~~~~~~~~~l~i~~~~~~ 421 (516)
....+. ..+.+|+.++|.|.+.+ .+ .+.+.|++.. ..+. ...++..........|+|.++..
T Consensus 143 v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~- 220 (280)
T 3fku_X 143 LTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQP- 220 (280)
T ss_dssp BBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCG-
T ss_pred EEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCH-
Confidence 001223 77899999999999988 44 3689998732 2111 13567776666777899999999
Q ss_pred CCceEEEEEEEcCCCc---eeEEEEEEEecCCC
Q psy7039 422 TDSGSYTIQLVNTVGS---DSASCKVYVVDKPS 451 (516)
Q Consensus 422 ~~~g~y~c~a~n~~G~---~s~s~~l~v~~~p~ 451 (516)
.|+|.|.|.+.|..+. ......|+|...|.
T Consensus 221 ~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~~ 253 (280)
T 3fku_X 221 EDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPK 253 (280)
T ss_dssp GGCSEEEEEEEETTTTEEEEBCCCEEEEC----
T ss_pred HHCEEEEEEEecCCCCceEECCCEEEEECCCCC
Confidence 9999999999998632 23335677765544
No 372
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.29 E-value=3e-11 Score=99.43 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred CcceeccCCCC------CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeC
Q psy7039 2 DHSVLIKNPFD------EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75 (516)
Q Consensus 2 ~~~~~~~~~~~------~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~ 75 (516)
|+.+.++++++ .|++|.+|++..+. ++|.|+|.+|. +.++.|.+|.|+|+.....+. ........++++|.
T Consensus 10 S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~P~-~~~g~i~~Y~v~y~~~~~~~~-~~~~~~~~~~~~i~ 86 (126)
T 1x5i_A 10 TDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPE-NQNIVVRGYAIGYGIGSPHAQ-TIKVDYKQRYYTIE 86 (126)
T ss_dssp CCCCCSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEECCS-CTTBCCCEEEEEECSSCGGGE-EEECCTTCCEEEEC
T ss_pred CCCEEeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcCCC-CCCCCEeEEEEEEEcCCCCce-EEEeCCCeeEEEEe
Confidence 56788889987 99999999999886 99999999996 445679999999985332332 22345678999999
Q ss_pred CCcCCCeEEEEEEEecCCCCCCCCCC
Q psy7039 76 GLIEGETYQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~~~s~~ 101 (516)
+|++++.|.|+++|.|..|.+.++..
T Consensus 87 ~L~p~t~Y~~~V~A~n~~G~g~~s~~ 112 (126)
T 1x5i_A 87 NLDPSSHYVITLKAFNNVGEGIPLYE 112 (126)
T ss_dssp SCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred CCCCCCEEEEEEEEEeCCccCcceee
Confidence 99999999999999999999887653
No 373
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.4e-11 Score=97.26 Aligned_cols=91 Identities=23% Similarity=0.349 Sum_probs=75.6
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC-C---CeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT-G---NWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
.+.++.|++|.+|++..+++++|.|+|.+|. ..++.|.+|.|+|+..+ . .|... ....++++|.+|+++..|
T Consensus 2 tT~~~~P~~p~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y 77 (109)
T 2e7h_A 2 SSGSSGPPAVSDIRVTRSSPSSLSLAWAVPR-APSGAVLDYEVKYHEKGAEGPSSVRFL---KTSENRAELRGLKRGASY 77 (109)
T ss_dssp CSSCCSSCCCCCCEEEEEETTEEEEECCCCC-CSSSCCCEEEEEEEETTCCSTTTSEEE---EESSSEEEEESCCTTSCE
T ss_pred CCCCCCCCCCCccEEEecCCCEEEEEeCCCC-CCCCcEeEEEEEEEECCCCCCceeEEE---ccCCCEEEECCCCCCCeE
Confidence 3567899999999999999999999999986 55567999999998865 2 33322 335779999999999999
Q ss_pred EEEEEEecCCCCCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s~~~ 102 (516)
.|+|+|.|..|.+.++...
T Consensus 78 ~~~V~A~n~~G~g~~S~~~ 96 (109)
T 2e7h_A 78 LVQVRARSEAGYGPFGQEH 96 (109)
T ss_dssp EEEEEEECSSCBCCCCSCE
T ss_pred EEEEEEEeCCccCCCCCCE
Confidence 9999999999988876543
No 374
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.29 E-value=1.6e-11 Score=98.20 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=76.5
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
.++++.|++|.+|++..+++++|.|+|.+|. +.++.|.+|+|+|+..+. .|.. .......++++|.+|+++..|.|+
T Consensus 2 tT~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~ 79 (108)
T 2djs_A 2 SSGSSGPSTVPIMHQVSATMRSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNS-SMARSQTNTARIDGLRPGMVYVVQ 79 (108)
T ss_dssp CSCCCCCCCCSCCEEEEECSSEEEEECCCCS-CCSSCEEEEEEEEEETTSCSTTC-EEEEESSSEEEEESCCTTCEEEEE
T ss_pred ccCCCCCCCCcceEEEecCCCEEEEEECCCC-CCCCeEEEEEEEEEECCCCCcce-eEEecCccEEEEcCCCCCCEEEEE
Confidence 4678899999999999999999999999985 445569999999998665 3321 123357899999999999999999
Q ss_pred EEEecCCCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASKPT 102 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~ 102 (516)
|+|.|..|.+.++...
T Consensus 80 V~A~n~~G~g~~S~~~ 95 (108)
T 2djs_A 80 VRARTVAGYGKFSGKM 95 (108)
T ss_dssp EEEEESSCEEEECCCE
T ss_pred EEEEeCCEECCCCCCE
Confidence 9999999988766543
No 375
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.29 E-value=2.8e-11 Score=96.38 Aligned_cols=88 Identities=25% Similarity=0.449 Sum_probs=78.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+...+....|.|.++.. .|.|.|+|.|.|..|.....
T Consensus 20 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~n~~g~~~~~ 98 (107)
T 3irg_B 20 PRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEAYAA 98 (107)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred CccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCH-HhCEEEEEEEEcCCCcEEEE
Confidence 45678999999999999999999999999999998877888777777777899999999 99999999999999998888
Q ss_pred EEEEEecCC
Q psy7039 442 CKVYVVDKP 450 (516)
Q Consensus 442 ~~l~v~~~p 450 (516)
+.|.|..+|
T Consensus 99 ~~l~V~~~P 107 (107)
T 3irg_B 99 AAVTVLEPP 107 (107)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEcCC
Confidence 999988654
No 376
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=97.08 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=77.8
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...
T Consensus 8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~k~~~~~~~~~~~~~~~~ 60 (103)
T 3qp3_A 8 APRIT-LRMRSHRVPCGQNTRFILNVQ--------------------------SKPTAEVKWYHNGVELQESSKIHYTNT 60 (103)
T ss_dssp EEEEE-ECCCCEEEETTCCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEEEEEE
T ss_pred CCEEE-eCCcceEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCCCCCEEEEEC
Confidence 56665 556778999999999999999 999999999999999988888888877
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 61 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 96 (103)
T 3qp3_A 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96 (103)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence 788899999999999999999999998887655543
No 377
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.28 E-value=1.9e-10 Score=106.53 Aligned_cols=131 Identities=16% Similarity=0.077 Sum_probs=79.6
Q ss_pred cceeeEEEccCCCCCceEEEEEEEecCC------CcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCce
Q psy7039 277 STTASLNIKNSVRKDSGIYKIEAKNDYG------IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350 (516)
Q Consensus 277 ~~~~~l~i~~l~~~d~g~y~c~a~n~~g------~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i 350 (516)
.....|.|.+++.+|+|.|+|.+.|..| .......+.|.........|.. .+ .
T Consensus 71 ~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v---------~~--~---------- 129 (245)
T 3nfj_J 71 DRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEV---------AV--F---------- 129 (245)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEE---------EE--E----------
T ss_pred CCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCce---------Ee--e----------
Confidence 3456899999999999999999998332 1223345666542111111100 00 0
Q ss_pred eeccccccccccccEEEEcCCeEEEEEEEeeecC-C-ceEEEECCeecCCCCceEE---E-----EcCC---eEEEEEcC
Q psy7039 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIKF---E-----TSEN---QTIYRNKS 417 (516)
Q Consensus 351 ~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~~---~-----~~~~---~~~l~i~~ 417 (516)
.+....+..|+.+.|.|.+.|.++ + .+.|+++|..+........ . ..+. .+.|.|..
T Consensus 130 ----------~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 199 (245)
T 3nfj_J 130 ----------EPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSA 199 (245)
T ss_dssp ----------ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEH
T ss_pred ----------cCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECH
Confidence 001112335899999999998643 4 6899999987754211100 0 0011 14688887
Q ss_pred ceecCC-ceEEEEEEEcCCCcee
Q psy7039 418 AKRATD-SGSYTIQLVNTVGSDS 439 (516)
Q Consensus 418 ~~~~~~-~g~y~c~a~n~~G~~s 439 (516)
... .| .|.|+|.|.|......
T Consensus 200 ~~~-~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 200 TFW-QNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp HHH-TCTTCEEEEEEEECCBCSS
T ss_pred HHh-ccCCCeEEEEEEECCCCCc
Confidence 777 77 6799999999876543
No 378
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.28 E-value=1.5e-11 Score=95.22 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+.++.+.+|+.+.|.|.+. +. .+.+.|++++..+....++.+..
T Consensus 4 ~~~~~~-~~~~~~~v~~G~~v~l~C~v~--------------------------~~-~~~v~W~k~g~~i~~~~~~~i~~ 55 (93)
T 1waa_A 4 ALIEVE-KPLYGVEVFVGETAHFEIELS--------------------------EP-DVHGQWKLKGQPLAASPDCEIIE 55 (93)
T ss_dssp CCCCEE-ECCCCEEEETTSCEEEEEEES--------------------------SS-SCCCEEEETTEECCCBTTEEEEE
T ss_pred CCcEee-ccCcceEEeCCCCEEEEEEEC--------------------------CC-CCeEEEEECCEECcCCCCEEEEE
Confidence 355565 677889999999999999998 64 47899999999999888998887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+....|.|.+++.+|+|.|+|.+.|..
T Consensus 56 ~g~~~~L~I~~v~~~D~G~Y~C~a~n~~ 83 (93)
T 1waa_A 56 DGKKHILILHNCQLGMTGEVSFQAANTK 83 (93)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred ECCEEEEEECCCChhhCEEEEEEECCCc
Confidence 8888899999999999999999998743
No 379
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.28 E-value=2.3e-11 Score=113.24 Aligned_cols=159 Identities=11% Similarity=0.073 Sum_probs=104.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCC--eee----------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSING--QVC---------- 181 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~--~~~---------- 181 (516)
..+..+.+.+|+++.|.|.+. +.+ .+.+.|++++ ...
T Consensus 39 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~ 92 (252)
T 3bkj_L 39 QTPLSLPVNLGEQASISCRSS--------------------------QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTR 92 (252)
T ss_dssp EECSEEEECTTSCEEEEEEES--------------------------SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEE
T ss_pred eCCceEEEeCCCcEEEEEEcC--------------------------CCccccCCCCcEEEEEECCCCCcEEEEEcCCcc
Confidence 445678899999999999998 666 5788998843 111
Q ss_pred --ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE---EEEEeec----eeeee----ccccCCceEEEEE
Q psy7039 182 --QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---ASAHVTG----TEFTD----NNVHEGKAYEYRV 248 (516)
Q Consensus 182 --~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~---~~~~~~~----~~~~~----~~l~~g~~~~~~~ 248 (516)
....|+.+...+...+|.|.+++.+|+|.|.|.+.+..+... ..+.+.. ..+.. ....+|..+.+.|
T Consensus 93 ~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C 172 (252)
T 3bkj_L 93 FSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVC 172 (252)
T ss_dssp CTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEE
T ss_pred cCCcCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEE
Confidence 013566666566677999999999999999999988755321 1222221 11111 1123588999999
Q ss_pred EEEccCC-CCCc-eecccccccc---e-EEE-E-Eec------ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 249 SAVNAAG-TEKP-KISLDALIGK---R-IKE-F-VTS------TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 249 ~~~~~~g-~p~p-~i~W~~~~~~---~-~~~-~-~~~------~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+ .| .|++ .+.|.+.... . ... . ... ....|.|..+..+|.|.|+|.|.|.....
T Consensus 173 ~~---~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 173 FL---NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp EE---EEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred EE---eeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 98 44 3443 7999762211 1 110 0 001 12358899999999999999999976554
No 380
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=99.28 E-value=5.9e-11 Score=105.70 Aligned_cols=141 Identities=29% Similarity=0.485 Sum_probs=101.5
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
.|.+|.. +.+..++.+++.|+|++|...++.++.+|. +.|...+.
T Consensus 5 ~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~--------------------------------v~~~~~~~-- 49 (197)
T 3lpw_A 5 TPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYI--------------------------------VEKRESTR-- 49 (197)
T ss_dssp SCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCCCEEE--------------------------------EEEEETTC--
T ss_pred CCCCCCC-cEEEEecCCEEEEEEcCCccCCCCcccEEE--------------------------------EEEEECCC--
Confidence 4444433 777888999999999999888888888872 22222211
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEE---EEEEecCCCCCCCCcccccccCCeEEEEeeC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC---KVYVVDKPSPPQGPLDVSDITPESCSLSWKP 473 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~---~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~ 473 (516)
.....+........+.|.+|.+ ...|.|++.|.|..|.+..+. ..+....|.+| ..+.+...+.+++.|+|++
T Consensus 50 --~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~a~~~~g~~~~s~~~~~~t~~~~p~~p-~~~~~~~~~~~~v~l~W~~ 125 (197)
T 3lpw_A 50 --KAYSTVATNCHKTSWKVDQLQE-GCSYYFRVLAENEYGIGLPAETAESVKASERPLPP-GKITLMDVTRNSVSLSWEK 125 (197)
T ss_dssp --SSCEEEEEEECSSEEEECCCCT-TCEEEEEEEEEETTEECCCEECSSCEESCCCCCCC-SCEEEEEECSSCEEEEECC
T ss_pred --CccEEeecCCCccEEEEcCCCC-CCEEEEEEEEEcCccccCCCCCccceecCCCCCCC-cccEEEeccCCeEEEEecC
Confidence 0111111222345789999999 999999999999998754443 23334456666 7888888899999999999
Q ss_pred CCCCCCCCcceEEEEEEecCCCc
Q psy7039 474 PLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 474 p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
|..++++.+.+|.|+++..+...
T Consensus 126 p~~~~~~~i~~Y~v~~~~~~~~~ 148 (197)
T 3lpw_A 126 PEHDGGSRILGYIVEMQTKGSDK 148 (197)
T ss_dssp CSCCTTSCCCEEEEEEEETTCSC
T ss_pred CCcCCCCcccEEEEEEEeCCCCc
Confidence 87777778999999999876655
No 381
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.28 E-value=4.7e-11 Score=93.26 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=78.4
Q ss_pred ccccEEEEcCCeEEEEEEEeee-cCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGR-PKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~-p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.+..+..|+.+.|.|.+.|. |.+.+.|++++..+..+.++.+....+...|.|.++.. .|.|.|+|.|.|..|...
T Consensus 7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~ 85 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDS 85 (97)
T ss_dssp CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEECSSCEEE
T ss_pred cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCCh-hhCeEEEEEEECCCCeEe
Confidence 4567889999999999999997 88999999999998888888887777778999999999 999999999999999998
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
.++.|.|..
T Consensus 86 ~~~~l~V~~ 94 (97)
T 2bk8_A 86 SYAELFVKG 94 (97)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEEEe
Confidence 888888865
No 382
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.28 E-value=1.2e-10 Score=109.41 Aligned_cols=124 Identities=16% Similarity=0.156 Sum_probs=80.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEec--CCCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKND--YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~--~g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~ 355 (516)
....|.|.+++.+|+|.|+|.+.|. .+.......+.|......+..|.. .+
T Consensus 98 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v---------~~------------------ 150 (268)
T 3pl6_D 98 SVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEV---------AV------------------ 150 (268)
T ss_dssp SSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEE---------EE------------------
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCce---------EE------------------
Confidence 3568999999999999999999974 222333445666542211111100 00
Q ss_pred cccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCC----------------CceEEEEcCCeEEEEEcC
Q psy7039 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPD----------------GRIKFETSENQTIYRNKS 417 (516)
Q Consensus 356 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~----------------~~~~~~~~~~~~~l~i~~ 417 (516)
..+....+..|+.+.|.|.+.|.+++ .+.|+++|..+..+ ..+.+. +.|.|..
T Consensus 151 ----~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----s~l~i~~ 221 (268)
T 3pl6_D 151 ----FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLS-----SRLRVSA 221 (268)
T ss_dssp ----ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEE-----EEEEEEH
T ss_pred ----eCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEE-----EEEEEcH
Confidence 00111223458999999999997665 89999999877432 122221 4577877
Q ss_pred ceecCC-ceEEEEEEEcCCCce
Q psy7039 418 AKRATD-SGSYTIQLVNTVGSD 438 (516)
Q Consensus 418 ~~~~~~-~g~y~c~a~n~~G~~ 438 (516)
... .| .|.|+|.|.|.....
T Consensus 222 ~~~-~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 222 TFW-QNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp HHH-SCTTCEEEEEEEECCBCT
T ss_pred HHh-ccCCCEEEEEEEcCCCCC
Confidence 777 66 999999999986553
No 383
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.28 E-value=5.6e-11 Score=98.03 Aligned_cols=94 Identities=35% Similarity=0.576 Sum_probs=79.0
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC---CCeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT---GNWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
.++|++|.++.+..++++++.|+|.+| .+++++|.+|.|+|+... +.|..+.......+. .|.+|.+++.|.|++
T Consensus 14 ~~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV 91 (127)
T 1uey_A 14 YDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRV 91 (127)
T ss_dssp CCSCCCCEEEEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCTTCEECCEE
T ss_pred ecCCcCCCCcEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCCCCEEEEEE
Confidence 578999999999999999999999987 577889999999998753 378877666555555 577999999999999
Q ss_pred EEecCCCCCCCCCCCcceE
Q psy7039 88 RAVNAAGPGEASKPTAPIV 106 (516)
Q Consensus 88 ~a~n~~g~~~~s~~~~~~~ 106 (516)
+|.|..|.+.++.....+.
T Consensus 92 ~A~n~~G~s~~S~~~~~~~ 110 (127)
T 1uey_A 92 MAVNSIGKSLPSEASEQYL 110 (127)
T ss_dssp EEEESSCBCCCCSCCCCEE
T ss_pred EEEeCCccCCccccccceE
Confidence 9999999998887654343
No 384
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.28 E-value=5.7e-11 Score=108.19 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=104.7
Q ss_pred ccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNS 287 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l 287 (516)
..+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 10 GLVQPGGSLKLSCAA---SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp EEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred eEecCCCcEEEEEEe---cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 456789999999988 4443 5778895421 1 12222221 23568999999
Q ss_pred CCCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 288 VRKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
+.+|+|.|.|.+.+..+. ......|.|...+..+.. +... ..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~-v~~~----------------------------------~~ 131 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPT-IYPL----------------------------------TL 131 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCE-EEEE----------------------------------CC
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCE-EEEe----------------------------------ec
Confidence 999999999999987542 122356666643221100 0000 01
Q ss_pred EEEEcCCeEEEEEEEeee-cC--CceEEEECCeecCC-CCceEEEEcCC---eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 365 MTVLAGEEFTITVPFSGR-PK--PTPIWTVNGDEVSP-DGRIKFETSEN---QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~-p~--~~i~W~~~~~~l~~-~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+..|+.+.|.|.+.+. |. +.+.|++++..+.. .........+. .+.|.|..... .|.|.|+|.|.|..|.
T Consensus 132 ~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~d~g~ytC~v~n~~~~ 210 (220)
T 2fbj_H 132 PPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVEC-PEGESVKCSVQHDSNP 210 (220)
T ss_dssp CSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGS-CTTCEEEEEEEETTSC
T ss_pred ccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHc-CCCCeEEEEEEcCCCc
Confidence 123578899999999987 65 68999999875411 00001101111 13588988888 8999999999999987
Q ss_pred ee
Q psy7039 438 DS 439 (516)
Q Consensus 438 ~s 439 (516)
..
T Consensus 211 ~~ 212 (220)
T 2fbj_H 211 VQ 212 (220)
T ss_dssp CE
T ss_pred eE
Confidence 43
No 385
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-11 Score=97.38 Aligned_cols=92 Identities=24% Similarity=0.462 Sum_probs=79.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+... .+...|.|.++.. .|.|.|+|.|.|..|..
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~ 92 (110)
T 2dm2_A 14 KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL-DDDGNYTIMAANPQGRI 92 (110)
T ss_dssp CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCT-TTCSCCEEEEECTTCCE
T ss_pred cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCCh-hhCEEEEEEEEECCCeE
Confidence 34667899999999999999999999999999988864 456666554 3445899999999 99999999999999999
Q ss_pred eEEEEEEEecCCCCC
Q psy7039 439 SASCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~s~~l~v~~~p~~P 453 (516)
+..+.|.|..+|.+|
T Consensus 93 ~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 93 SCTGRLMVQAVNSGP 107 (110)
T ss_dssp EECCCEEEECCSCCS
T ss_pred EEEEEEEEECCCCCC
Confidence 999999999888877
No 386
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.27 E-value=4.6e-11 Score=109.43 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=105.5
Q ss_pred eccccCCceEEEEEEEEccCCCCC----ceecccccc-c----------------------ceEEEEEe--cceeeEEEc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEK----PKISLDALI-G----------------------KRIKEFVT--STTASLNIK 285 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~----p~i~W~~~~-~----------------------~~~~~~~~--~~~~~l~i~ 285 (516)
...+.+|..+.|.|.+ .|.+. +.+.|.+.. + .++.+... .....|.|.
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 85 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSF---SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT 85 (228)
T ss_dssp CSEECTTCCEEEEEEE---ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred ceeecCCCeEEEEEEE---eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence 3456789999999998 55554 789995421 1 12222221 235789999
Q ss_pred cCCCCCceEEEEEEEecCC------C---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccc
Q psy7039 286 NSVRKDSGIYKIEAKNDYG------I---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356 (516)
Q Consensus 286 ~l~~~d~g~y~c~a~n~~g------~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~ 356 (516)
+++.+|+|.|.|.+.|..| . ......|.|...+. ..|....
T Consensus 86 ~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~--~~P~i~~---------------------------- 135 (228)
T 3bae_H 86 SVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKT--TAPSVYP---------------------------- 135 (228)
T ss_dssp SCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCC--BCCEEEE----------------------------
T ss_pred CCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCC--CCCEEEE----------------------------
Confidence 9999999999999998765 1 11235666654221 1110000
Q ss_pred ccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEE
Q psy7039 357 TSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQL 431 (516)
Q Consensus 357 ~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a 431 (516)
......+..|+.+.|.|.+.|. |.+ .+.|++++..+...........+ ..+.|.|..+.. ++ |.|+|.|
T Consensus 136 ----~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~-g~YtC~~ 209 (228)
T 3bae_H 136 ----LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-ESITCNV 209 (228)
T ss_dssp ----ECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTT-TT-SCCEEEE
T ss_pred ----ecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhc-CC-CcEEEEE
Confidence 0011235689999999999987 777 99999988653211111111111 124688888877 67 9999999
Q ss_pred EcCCCceeEEEE
Q psy7039 432 VNTVGSDSASCK 443 (516)
Q Consensus 432 ~n~~G~~s~s~~ 443 (516)
.|..|.......
T Consensus 210 ~n~~~~~~~~~~ 221 (228)
T 3bae_H 210 AHPASSTKVDKK 221 (228)
T ss_dssp EEGGGTEEEEEE
T ss_pred EECCCCCCEEEE
Confidence 999987654433
No 387
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.27 E-value=6.6e-11 Score=92.75 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=74.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEE-EcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~-~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++... ...+...|.|.++.. .|+|.|+|.|.|..|....
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~g~~~~ 90 (99)
T 1g1c_A 12 IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG-EDSASIMVKAINIAGETSS 90 (99)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCc-CCCEEEEEEEEECCCcEEE
Confidence 45678999999999999999999999999999988766665543 345667899999999 9999999999999999888
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 91 ~~~l~V~~ 98 (99)
T 1g1c_A 91 HAFLLVQA 98 (99)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 88888864
No 388
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=93.60 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=64.8
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEe
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDI 200 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i 200 (516)
+..+.+.+|+.+.|.|.+. + |.+.+.|++++..+....++.+...+....|.|
T Consensus 3 lt~v~~~~G~~v~l~C~vs--------------------------~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I 55 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLS--------------------------G-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRV 55 (84)
T ss_dssp CCCEEECTTSCEEEECCCS--------------------------C-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEE
T ss_pred CeEEEEecCCCEEEEEEEC--------------------------C-CCcEEEEEECCEEccccccEEEeecCCeEEEEe
Confidence 4568899999999999987 6 888999999999999999999888888899999
Q ss_pred ccCCCCCCeeEEEEEEcCC
Q psy7039 201 PFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 201 ~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+++.+|+|.|+|.+.|..
T Consensus 56 ~~~~~~D~G~Y~C~a~n~~ 74 (84)
T 2lu7_A 56 QGARSGDAGEYLCDAPQDS 74 (84)
T ss_dssp SSCSSTTCEEEEEECTTTC
T ss_pred cCCCCcccEEEEEEECCEE
Confidence 9999999999999986643
No 389
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.27 E-value=6.6e-11 Score=92.71 Aligned_cols=86 Identities=30% Similarity=0.548 Sum_probs=78.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|..+.+
T Consensus 13 ~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~ 91 (99)
T 3puc_A 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT-SDSGLYTCTVKNSAGSVSSS 91 (99)
T ss_dssp CCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred CccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCc-ccCEEEEEEEEeCCCcEeEE
Confidence 45678999999999999999999999999999999888888888777778999999999 99999999999999999888
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|.|..
T Consensus 92 ~~l~V~~ 98 (99)
T 3puc_A 92 CKLTIKA 98 (99)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 8888863
No 390
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.27 E-value=1e-10 Score=108.23 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=78.7
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC----CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeec
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY----GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGA 353 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~----g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y 353 (516)
....|.|.+++.+|+|.|.|.+.+.. +.......+.|.........|.. .+
T Consensus 74 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~---------~~---------------- 128 (245)
T 4ei6_B 74 SYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEV---------AV---------------- 128 (245)
T ss_dssp SCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEE---------EE----------------
T ss_pred ceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceE---------EE----------------
Confidence 34589999999999999999998532 22223445666542111111100 00
Q ss_pred cccccccccccEEEEcCCeEEEEEEEeeecC-C-ceEEEECCeecCCCCceEEEE-------cCC----eEEEEEcCcee
Q psy7039 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPK-P-TPIWTVNGDEVSPDGRIKFET-------SEN----QTIYRNKSAKR 420 (516)
Q Consensus 354 ~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~-~i~W~~~~~~l~~~~~~~~~~-------~~~----~~~l~i~~~~~ 420 (516)
..+....+..|+.+.|.|.+.|.++ + .+.|+++|..+.......... ..+ .+.|.|.....
T Consensus 129 ------~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~ 202 (245)
T 4ei6_B 129 ------FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 202 (245)
T ss_dssp ------ECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHH
T ss_pred ------eCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence 0011122345899999999998544 4 899999998775422110000 011 13588888877
Q ss_pred cCC-ceEEEEEEEcCCCcee
Q psy7039 421 ATD-SGSYTIQLVNTVGSDS 439 (516)
Q Consensus 421 ~~~-~g~y~c~a~n~~G~~s 439 (516)
.| .|.|+|.|.|......
T Consensus 203 -~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 203 -QNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp -SCTTCEEEEEEEECCBCTT
T ss_pred -ccCCCeEEEEEEECCCCCc
Confidence 77 9999999999865433
No 391
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.27 E-value=2.4e-11 Score=95.28 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=77.2
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...
T Consensus 6 ~P~i~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~g~~~~~~~~~~~~~~ 58 (99)
T 3puc_A 6 KPVIV-TGLQDTTVSSDSVAKFAVKAT--------------------------GEPRPTAIWTKDGKAITQGGKYKLSED 58 (99)
T ss_dssp EEEEE-ECCCCEEEESSSCEEEEEEEE--------------------------EESCCEEEEEETTEECCSSSSEEEEEE
T ss_pred CCEEE-ecCccEEEeCCCcEEEEEEEE--------------------------ecCCCEEEEEECCEECcCCCCEEEEEe
Confidence 45555 556778999999999999999 899999999999999988888888877
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 59 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 94 (99)
T 3puc_A 59 KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94 (99)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence 778899999999999999999999998877655543
No 392
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.27 E-value=7.9e-12 Score=112.40 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred cEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCc
Q psy7039 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSP 148 (516)
Q Consensus 70 ~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~ 148 (516)
..|.|.+++..|.|.|+|.|.|..|... ......+.+.. +|.+. .......+.+|+.+.|.|.+ .
T Consensus 68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~-~~~~~~l~V~~---~p~~~-~~~~~~~~~~g~~~~l~C~~~~--------- 133 (209)
T 1nbq_A 68 TGITFKSVTREDTGTYTCMVSEEGGNSY-GEVKVKLIVLV---PPSKP-TVNIPSSATIGNRAVLTCSEQD--------- 133 (209)
T ss_dssp TEEECSCCCTTSCSEEEEEEEETTSSCE-ECCEEECCEEB---CCCCC-CCCCBSEEETTSCEEECCCCCS---------
T ss_pred cEEEEeeCCHHHCcEEEEEEecCCCCcc-ceEEEEEEEec---CCcCC-CcccccceecCCEEEEEEeCCC---------
Confidence 7899999999999999999999866322 11222222222 33332 22334568899999999997 6
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCce-------EEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRA-------DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~ 221 (516)
+.|.+.+.|++++..+....+. .+........|.|.+++.+|+|.|+|.+.|..|.
T Consensus 134 -----------------~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 196 (209)
T 1nbq_A 134 -----------------GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 196 (209)
T ss_dssp -----------------CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred -----------------CCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCc
Confidence 8999999999999887654322 1112234578999999999999999999999887
Q ss_pred eEE
Q psy7039 222 ATA 224 (516)
Q Consensus 222 ~~~ 224 (516)
...
T Consensus 197 ~~~ 199 (209)
T 1nbq_A 197 PMT 199 (209)
T ss_dssp CEE
T ss_pred ccc
Confidence 743
No 393
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.26 E-value=5.1e-11 Score=106.45 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=100.0
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEE---eEEeecCCcEEEeCCCcCCCeEEEEEEEecCC-CCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK---AVVVPAGETSCTVPGLIEGETYQFQVRAVNAA-GPGEASK 100 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~-g~~~~s~ 100 (516)
...+.+.|.+.... . +. . +.|...+..... ..........|.|.+++..|.|.|+|.|.|.. |....+.
T Consensus 17 ~~G~~v~L~C~~~~---~-~~-~--~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~ 89 (198)
T 1ugn_A 17 TQGSPVTLRCQGGQ---E-TQ-E--YRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSD 89 (198)
T ss_dssp ETTCCEEEEEECCT---T-CC-C--EEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCC
T ss_pred cCCCcEEEEEEecC---C-Cc-E--EEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCc
Confidence 35677899988632 1 11 2 445444431100 00012356789999999999999999999976 5333222
Q ss_pred CCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCee
Q psy7039 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQV 180 (516)
Q Consensus 101 ~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~ 180 (516)
...+.+.....+|.+. .. ....+.+|+.+.|.|.+. +. .+.+.|++++..
T Consensus 90 -~~~l~V~~~~~~p~i~-~~-~~~~v~~G~~v~L~C~~~--------------------------~~-~~~v~W~k~g~~ 139 (198)
T 1ugn_A 90 -PLELVVTGAYIKPTLS-AQ-PSPVVNSGGNVTLQCDSQ--------------------------VA-FDGFILCKEGED 139 (198)
T ss_dssp -CEEEEEECSSCCCEEE-EE-SCSEEETTCCEEEEEECS--------------------------SC-CSEEEEEEC---
T ss_pred -cEEEEEcccccCCccc-cC-CccccCCCCcEEEEEecC--------------------------CC-CcEEEEEECCCc
Confidence 2334443333456554 22 236788999999999999 77 679999999887
Q ss_pred eccCCc-eEEe-ecCCeeEEEeccCCCCCCeeEEEEEEcCCC
Q psy7039 181 CQIGGR-ADVQ-TTKSETVLDIPFCSRSDTGHYSLTLENNLG 220 (516)
Q Consensus 181 ~~~~~~-~~~~-~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g 220 (516)
+..... +... ..+....|.|.+++.+|+|.|+|.+.|..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 140 EHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp ---CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence 643221 1111 123457999999999999999999999765
No 394
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=99.26 E-value=7.8e-12 Score=127.69 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=118.1
Q ss_pred CCCCceEEEEEEEecCCCccee-EEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEE
Q psy7039 288 VRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366 (516)
Q Consensus 288 ~~~d~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~ 366 (516)
...+.|.|.|.+.|.++..... ....+..+|.+|.. + ...++.+++.|+|.+|.+.+|.+|.+|.
T Consensus 303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~n-l-~~~vs~tSv~LsW~pP~~~gG~~i~~Y~------------ 368 (536)
T 3fl7_A 303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHY-L-TAVGMGAKVELRWTPPQDSGGREDIVYS------------ 368 (536)
T ss_dssp ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSC-E-EEECCTTSEEEEECCBSCCCSCSCCEEE------------
T ss_pred CCCCCCccEEEEeccccccCCCccccccccCCCcccc-e-EEEecCCEEEEEEeCCcCCCCCceeEEE------------
Confidence 4557799999999998875443 22233345555544 4 3468899999999999999998888883
Q ss_pred EEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceE-EEEcCCeEEEEEcCceecCCceEEEEEEEcCCCc---eeEEE
Q psy7039 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK-FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS---DSASC 442 (516)
Q Consensus 367 v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~-~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~---~s~s~ 442 (516)
+.|...+... -.|...+.. ..+. .........++|.+|.+ ...|.|++.|.|..|. ...+.
T Consensus 369 --------V~~~~~~~~~--~~~~~c~~~----~~~~~~~~~~~~ts~tI~gL~P-~T~Y~frV~A~N~~G~~sps~~s~ 433 (536)
T 3fl7_A 369 --------VTCEQCWPES--GECGPCEAS----VRYSEPPHGLTRTSVTVSDLEP-HMNYTFTVEARNGVSGLVTSRSFR 433 (536)
T ss_dssp --------EEEEEECC-C--CCEEECCTT----CEESSCSSSBCSSEEEEECCCT-TCEEEEEEEEECTTGGGCSCCCEE
T ss_pred --------EEEEeccCCC--CcccccCCC----ceEEEeecCCccceeEeCCCCC-CCEEEEEEEEEecCCCCCCCCccc
Confidence 1111110000 011110000 0000 00011235688999999 9999999999999987 44667
Q ss_pred EEEEecCCCCCCCCcccccccCCeEEEEeeCCCCCCCCCcceEEEEEEecCCC
Q psy7039 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495 (516)
Q Consensus 443 ~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~~~~~i~~Y~v~~~~~~~~ 495 (516)
.+.+.+.+.+| ..+.+..++.+++.|+|++|. +.++.|.+|.|+|+..+..
T Consensus 434 ~v~v~T~~~~P-s~~~~~~~s~tSV~LsW~pP~-~~ng~I~~Y~V~y~~~~~~ 484 (536)
T 3fl7_A 434 TASVSINQTEP-PKVRLEGRSTTSLSVSWSIPP-PQQSRVWKYEVTYRKKGDS 484 (536)
T ss_dssp EEEEECCSCCC-CEEEEEECCC-CCEEEEECCT-TTTTTCSEEEEEEEEC--C
T ss_pred eeEEeecccCC-CCCceeeccCCeEEEEEECCc-CCCCcccEEEEEEEECCCC
Confidence 88888888877 566667888999999999885 5678899999999987654
No 395
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=99.26 E-value=7.9e-12 Score=112.89 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=95.8
Q ss_pred EEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEEC
Q psy7039 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392 (516)
Q Consensus 313 ~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~ 392 (516)
.....|.+|.. +.+...+. ++.|+|.+|.+++|.+|.+|. |.|...
T Consensus 4 ~~~~~P~~P~~-~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~--------------------------------v~~~~~ 49 (209)
T 2vkw_A 4 AQADTPSSPSI-DQVEPYSS-TAQVQFDEPEATGGVPILKYK--------------------------------AEWRAV 49 (209)
T ss_dssp -CCCCCCCCEE-EEEEECSS-CEEEEEECCSCCCSSCCCEEE--------------------------------EEEEES
T ss_pred cccCCCcCCcc-cEeeeccC-eEEEEEcCCCcCCCcceeEEE--------------------------------EEEeeC
Confidence 33445555433 66766666 689999999888998898883 223222
Q ss_pred CeecCCCCceEEEE----cCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEec----CCCCCCCCcccccccC
Q psy7039 393 GDEVSPDGRIKFET----SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD----KPSPPQGPLDVSDITP 464 (516)
Q Consensus 393 ~~~l~~~~~~~~~~----~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~----~p~~P~~~l~~~~~~~ 464 (516)
+.. ....... ......+.|.+|.+ ...|.|+|.|.|..|.+..+..+.+.+ .|.+| ..+.+..++.
T Consensus 50 ~~~----~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P-~~~~~~~~~~ 123 (209)
T 2vkw_A 50 GEE----VWHSKWYDAKEASMEGIVTIVGLKP-ETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAP-KLEGQMGEDG 123 (209)
T ss_dssp SCC----CCEEEEEEHHHHHHHSEEEECCCCT-TCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCC-EEEEEECTTS
T ss_pred CCC----CceEeEeeccCCCccceEEeCCCCC-CCeEEEEEEEEcCCcccCCcccccccccCCCCCCCC-cccccccccC
Confidence 210 0001110 01124688999999 999999999999998866555454544 35555 4566777889
Q ss_pred CeEEEEeeCCCCCCCCCcceEEEEEEe
Q psy7039 465 ESCSLSWKPPLDDGGSPITNYVVEKYE 491 (516)
Q Consensus 465 ~~~~l~W~~p~~~~~~~i~~Y~v~~~~ 491 (516)
+++.|+|++| .+++++|.+|.|+|+.
T Consensus 124 ~sv~l~W~~p-~~~~~~i~~Y~v~~~~ 149 (209)
T 2vkw_A 124 NSIKVNLIKQ-DDGGSPIRHYLVRYRA 149 (209)
T ss_dssp SCEEEEEECC-CCTTSCCCEEEEEEEE
T ss_pred CeEEEEEECc-ccCCCCCceEEEEEEC
Confidence 9999999998 4778899999999998
No 396
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.26 E-value=2.1e-11 Score=101.05 Aligned_cols=96 Identities=25% Similarity=0.383 Sum_probs=79.6
Q ss_pred ceeccCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCe--EEeEEeecCCcEEEeCCCcCCC
Q psy7039 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 4 ~~~~~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
.+.+++..+.|++|.+|++..++++++.|+|.+|. +.++.|.+|.|+|+..+..+ ..........++++|.+|++++
T Consensus 18 ~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 96 (130)
T 1wfo_A 18 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPA-APNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPES 96 (130)
T ss_dssp CSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCS-CCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSS
T ss_pred cEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCC-CCCCceEEEEEEEEECCCCCceEEEEEeCCCceEEEEcCCCCCC
Confidence 37888999999999999999999999999999986 44456999999999865421 1122445678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASK 100 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~ 100 (516)
.|.|+|+|.|..|.+.++.
T Consensus 97 ~Y~~~V~A~n~~G~g~~S~ 115 (130)
T 1wfo_A 97 VYLFRITAQTRKGWGEAAE 115 (130)
T ss_dssp EEEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEEeCCcCCCCcc
Confidence 9999999999999876543
No 397
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.26 E-value=6e-11 Score=96.11 Aligned_cols=93 Identities=23% Similarity=0.415 Sum_probs=79.7
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcC-CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSE-NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
..+.+..+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+.... +...|.|.++.. .|.|.|+|.|.|..|.
T Consensus 20 ~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~ 98 (116)
T 2kkq_A 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNK-KDAGWYTVSAVNEAGV 98 (116)
T ss_dssp SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECG-GGCEEEEEEEEETTEE
T ss_pred eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCc-ccCEEEEEEEEcCCCe
Confidence 345678899999999999999999999999999988864 4566665544 345899999999 9999999999999999
Q ss_pred eeEEEEEEEecCCCCC
Q psy7039 438 DSASCKVYVVDKPSPP 453 (516)
Q Consensus 438 ~s~s~~l~v~~~p~~P 453 (516)
....+.|.|..+|.++
T Consensus 99 ~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 99 TTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEEEEEECCSCCC
T ss_pred EEEEEEEEEeCCCCCC
Confidence 9999999999877655
No 398
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.26 E-value=2.7e-11 Score=93.81 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=71.8
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eeeccCCceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVCQIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~~~~~~~~~~ 190 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++ ..+.... .+.
T Consensus 2 ~P~i~-~~~~~~~v~~G~~~~l~C~~~--------------------------g~P~p~i~W~k~~~~~~~~~~~--~~~ 52 (93)
T 1wit_A 2 KPKIL-TASRKIKIKAGFTHNLEVDFI--------------------------GAPDPTATWTVGDSGAALAPEL--LVD 52 (93)
T ss_dssp CCEEC-CCCCEEEECTTBCCEEEEEEE--------------------------CCSSCEEEEECSTTTCBCSTTS--EEE
T ss_pred CCeEE-cCCCceEEeCCCEEEEEEEEE--------------------------EcCCCEEEEEECCCCcccCCcE--EEE
Confidence 56665 556788999999999999999 9999999999999 7775443 333
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 53 ~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 90 (93)
T 1wit_A 53 AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred ecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEE
Confidence 44567899999999999999999999999977665544
No 399
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.5e-11 Score=97.16 Aligned_cols=99 Identities=19% Similarity=0.344 Sum_probs=79.7
Q ss_pred CcceeccCCCCCCC-CCcceEEE-eeeCCeeEEEecCCC-CCCCCceeceEEEEEeC-CC---CeEEeEEeecCCcEEEe
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEAT-DWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDK-TG---NWEKAVVVPAGETSCTV 74 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~-~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~-~~---~~~~~~~~~~~~~~~~i 74 (516)
|+.+.++++++.|. +|.++++. ..++++|.|+|.+|. ...++.|.+|+|+|+.. .+ .|.. ......++++|
T Consensus 6 S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~l 83 (124)
T 2dbj_A 6 SGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLE--EVGQNGSRARI 83 (124)
T ss_dssp CCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEE--EEESTTSCEEE
T ss_pred CCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEE--EeCCCcceEEe
Confidence 67888999999987 99999998 588999999999983 23445799999999742 22 2322 23457889999
Q ss_pred CCCcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 75 PGLIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 75 ~~l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.+|.++..|.|+|+|.|..|.+..+...
T Consensus 84 ~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~ 111 (124)
T 2dbj_A 84 SVQVHNATCTVRIAAVTRGGVGPFSDPV 111 (124)
T ss_dssp ECCCSSSEEEECEEEEESSCBCCCCCCE
T ss_pred cCCCCCCEEEEEEEEECCCccCCCCCCE
Confidence 9999999999999999999998876543
No 400
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.1e-10 Score=109.82 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=106.7
Q ss_pred ccccCCceEEEEEEEEccCCCC-----Cceecccccc-------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTE-----KPKISLDALI-------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p-----~p~i~W~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
..+.+|+.+.|.|.+ .+.+ .+.+.|.+.. ..++..........|.|.+++.+|
T Consensus 25 ~~v~~G~~v~L~C~~---~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 101 (268)
T 1x9q_A 25 LPVSLGDQASISCRS---SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED 101 (268)
T ss_dssp ECCCTTCCEEEEEEE---SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEecCCCCEEEEeEe---cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence 356789999999997 5555 4789996421 123333334456789999999999
Q ss_pred ceEEEEEEEecCCC-cceeEEEEEecCCC--CCC-CC---ceeeecc-CCeeEEEecCCCCCCCCceeeccccccccccc
Q psy7039 292 SGIYKIEAKNDYGI-DMADIEVVVVSKPG--PPT-GP---IDYTTVT-PESVSMSWKPPVDDGGTPITGAPKITSDLSIR 363 (516)
Q Consensus 292 ~g~y~c~a~n~~g~-~~~~~~l~v~~~p~--~p~-~p---~~~~~~~-~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~ 363 (516)
+|.|.|.+.|..+. ......|.|...+. .|. .| +.+.... ...+.+ ..+.
T Consensus 102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~----------------------~~~~ 159 (268)
T 1x9q_A 102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKL----------------------DETG 159 (268)
T ss_dssp CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEE----------------------EEEC
T ss_pred CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEE----------------------ECCC
Confidence 99999999987543 12234565554332 000 00 0000000 000001 1123
Q ss_pred cEEEEcCCeEEEEEEEeeecC--CceEEEECC--eec-------------------CCCCceEEEEc--CCeEEEEEcCc
Q psy7039 364 DMTVLAGEEFTITVPFSGRPK--PTPIWTVNG--DEV-------------------SPDGRIKFETS--ENQTIYRNKSA 418 (516)
Q Consensus 364 ~~~v~~g~~~~l~C~~~g~p~--~~i~W~~~~--~~l-------------------~~~~~~~~~~~--~~~~~l~i~~~ 418 (516)
...+.+|+.+.|.|.+.+.+. +.+.|+++. ..+ ....++.+... .....|.|.++
T Consensus 160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 239 (268)
T 1x9q_A 160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNL 239 (268)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 467889999999999988753 789998852 211 12345665432 34578999999
Q ss_pred eecCCceEEEEEEEcC
Q psy7039 419 KRATDSGSYTIQLVNT 434 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~ 434 (516)
.. .|+|.|.|.|.|.
T Consensus 240 ~~-~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 240 RV-EDTGIYYCTGASY 254 (268)
T ss_dssp CG-GGCEEEEEEEEET
T ss_pred CH-HHCEEEEEEEccC
Confidence 99 9999999999985
No 401
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.9e-11 Score=94.35 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=76.7
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
..+.+..+..|+.+.|.|.+ .|.+.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. ..+
T Consensus 12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~--~~~ 86 (100)
T 2yuz_A 12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALT-EDEGDYVFAPDAY--NVT 86 (100)
T ss_dssp BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCG-GGCSEEEEEESSS--CCC
T ss_pred ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCCh-hhCEEEEEEEcCC--Cee
Confidence 34567889999999999999 788899999999999888898888877778999999999 9999999999998 556
Q ss_pred EEEEEEEecCCC
Q psy7039 440 ASCKVYVVDKPS 451 (516)
Q Consensus 440 ~s~~l~v~~~p~ 451 (516)
.++.|.|..+|.
T Consensus 87 ~~a~L~V~~~P~ 98 (100)
T 2yuz_A 87 LPAKVHVISGPS 98 (100)
T ss_dssp EEEEEEEECCSC
T ss_pred EEEEEEEeCCCC
Confidence 778888887654
No 402
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.26 E-value=2.6e-11 Score=91.77 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=70.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.++.+.+|+.+.|.|.+.+ |.|.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|. ..+.+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~----n~~~~ 76 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARS-GDAGEYLCDAP----QDSRI 76 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSS-TTCEEEEEECT----TTCEE
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCC-cccEEEEEEEC----CEEEE
Confidence 45678999999999999966 88899999999999988899988888888999999999 99999999984 45667
Q ss_pred EEEEEec
Q psy7039 442 CKVYVVD 448 (516)
Q Consensus 442 ~~l~v~~ 448 (516)
+.|.|..
T Consensus 77 a~l~V~e 83 (84)
T 2lu7_A 77 FLVSVEE 83 (84)
T ss_dssp EEEEECC
T ss_pred EEEEEEC
Confidence 7787764
No 403
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5e-11 Score=94.78 Aligned_cols=90 Identities=26% Similarity=0.404 Sum_probs=74.3
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
+..++|++|.++++..++++++.|+|.+| +++.|.+|.|+|+..+. .|..+. ....+.+.|.+|++++.|.|+
T Consensus 3 t~~~~P~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~ 77 (106)
T 2dju_A 3 SGSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVD--GVATTRYSIGGLSPFSEYAFR 77 (106)
T ss_dssp CCCCSCCCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBC--CCCSSEEEEESCCTTCEEEEE
T ss_pred CCCcCCcCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEcc--CCCccEEEEeCCCCCcEEEEE
Confidence 34678999999999999999999999986 24679999999988654 565432 235788999999999999999
Q ss_pred EEEecCCCCCCCCCCCc
Q psy7039 87 VRAVNAAGPGEASKPTA 103 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~~ 103 (516)
|+|.|..|.+.++....
T Consensus 78 V~A~n~~G~~~~S~~~~ 94 (106)
T 2dju_A 78 VLAVNSIGRGPPSEAVR 94 (106)
T ss_dssp EEEECSSCBCCCCCCEE
T ss_pred EEEEeCCccCCCcccEE
Confidence 99999999988765443
No 404
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=99.25 E-value=1.2e-10 Score=119.07 Aligned_cols=180 Identities=22% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC---CeEEe--------EEeecCCcEEEeCCCcC
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG---NWEKA--------VVVPAGETSCTVPGLIE 79 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~---~~~~~--------~~~~~~~~~~~i~~l~~ 79 (516)
..+|++|.++.. .+++++|.|+|.+|...++.++.+|.|+++..+. .|... .......++++|.+|.+
T Consensus 331 t~pPsaP~nl~~-~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P 409 (536)
T 3fl7_A 331 TRPPSAPHYLTA-VGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP 409 (536)
T ss_dssp BCCCCCBSCEEE-ECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCT
T ss_pred ccCCCcccceEE-EecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCC
Confidence 358999999954 6899999999999986777789999999987321 23221 11223578999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCc
Q psy7039 80 GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANST 159 (516)
Q Consensus 80 ~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~ 159 (516)
++.|.|+|+|.|..|.+.++..+..+.......+|.- +.+ ...
T Consensus 410 ~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~-------~~~----------~~~-------------------- 452 (536)
T 3fl7_A 410 HMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPK-------VRL----------EGR-------------------- 452 (536)
T ss_dssp TCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCE-------EEE----------EEC--------------------
T ss_pred CCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCC-------Cce----------eec--------------------
Confidence 9999999999998887443333444444443334421 111 111
Q ss_pred cceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCc-eEEEEEeeceeeeeccc
Q psy7039 160 KGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT-ATASAHVTGTEFTDNNV 238 (516)
Q Consensus 160 ~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~-~~~~~~~~~~~~~~~~l 238 (516)
+.....+.|......-.... .|...+....+. ...........+.+.+|
T Consensus 453 ------s~tSV~LsW~pP~~~ng~I~------------------------~Y~V~y~~~~~~~~~~~v~~~~ts~~l~gL 502 (536)
T 3fl7_A 453 ------STTSLSVSWSIPPPQQSRVW------------------------KYEVTYRKKGDSNSYNVRRTEGFSVTLDDL 502 (536)
T ss_dssp ------CC-CCEEEEECCTTTTTTCS------------------------EEEEEEEEC--CCCCEEEEESSSEEECCSC
T ss_pred ------cCCeEEEEEECCcCCCCccc------------------------EEEEEEEECCCCceEEEEcCCCCEEEECCC
Confidence 34566788875421100001 344444332222 12223345567788999
Q ss_pred cCCceEEEEEEEEccCCCCC
Q psy7039 239 HEGKAYEYRVSAVNAAGTEK 258 (516)
Q Consensus 239 ~~g~~~~~~~~~~~~~g~p~ 258 (516)
.+++.|.++|.|.+..|..+
T Consensus 503 ~P~T~Y~frVrA~n~~G~Gp 522 (536)
T 3fl7_A 503 APDTTYLVQVQALTQEGQGA 522 (536)
T ss_dssp CSSCEEEEEEEEECC---CE
T ss_pred CCCCEEEEEEEEEcCCcccC
Confidence 99999999999999888643
No 405
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.25 E-value=5.3e-11 Score=106.34 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=107.2
Q ss_pred cccCCceEEEEEEEEccCCCCCc--eecccccccceEEEEEecceeeEEEccCCCCCceEEEEEEEecCCCcceeEEEEE
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTEKP--KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v 314 (516)
.+..|....+.|.+ |.|.| .+.|.+................|.|.+++.+|+|.|.|.|.|..+.....+.|.|
T Consensus 18 ~v~~G~sv~L~C~a----~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 18 AVALGASRQLTCRL----ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEETTCCEEEEEEE----CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCCCEEEEEEC----CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 56789999999987 34555 9999774322122333466788999999999999999999999888778889999
Q ss_pred ecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cC----CceEE
Q psy7039 315 VSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PK----PTPIW 389 (516)
Q Consensus 315 ~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~----~~i~W 389 (516)
..+|..+.. . . .....|+.. |.|.+.+. |. +.|.|
T Consensus 94 ~~~P~~~~i----~----------------------------------~-~~~~~g~~~-l~C~a~g~~P~~~~~lti~W 133 (210)
T 1gsm_A 94 YAFPNQLTV----S----------------------------------P-AALVPGDPE-VACTAHKVTPVDPNALSFSL 133 (210)
T ss_dssp EBCCSEEEE----E----------------------------------S-SSBCTTCCE-EEEEEEEEBCCCTTTEEEEE
T ss_pred EecCCCcEE----c----------------------------------c-ceEEeCCce-EEEEeCCCCCCCCCCcEEEE
Confidence 877654210 0 0 123467777 99999986 53 37999
Q ss_pred EECCeecCCCCce--EEEE----c--CC------eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 390 TVNGDEVSPDGRI--KFET----S--EN------QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 390 ~~~~~~l~~~~~~--~~~~----~--~~------~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
++++..+...... .... . .. .+.+.+..... ++.+.|+|.|.+.+-.
T Consensus 134 lk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~-D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT-PVPPALYCQATMRLPG 194 (210)
T ss_dssp EETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCS-SCCSEEEEEEEEEETT
T ss_pred EECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcc-cCCceEEEEEEeeCCC
Confidence 9999988543210 1100 0 01 12344545555 7778999999988643
No 406
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.7e-11 Score=97.32 Aligned_cols=92 Identities=20% Similarity=0.363 Sum_probs=75.3
Q ss_pred eeccCCC-CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeE
Q psy7039 5 VLIKNPF-DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETY 83 (516)
Q Consensus 5 ~~~~~~~-~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y 83 (516)
+...+++ ++|++|.+|++..++ ++|.|+|.+|... ++.|.+|.|+|+.... +..........++++|.+|++++.|
T Consensus 8 ~~~~t~e~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~-ng~i~gY~i~y~~~~~-~~~~~~~~~~~~~~~l~~L~p~t~Y 84 (116)
T 2edb_A 8 PENDLDESQVPDQPSSLHVRPQT-NCIIMSWTPPLNP-NIVVRGYIIGYGVGSP-YAETVRVDSKQRYYSIERLESSSHY 84 (116)
T ss_dssp SSSSCBCSSCCCCCSCEEEEECS-SCEEEEECCCSCT-TBCCCEEEEEEEESST-TSEEEEEETTCCEEEECSCCSSSBE
T ss_pred ccccCCCCCCCCCCCCeEEEECC-CEEEEEEcCCCCC-CCceeEEEEEEEeCCC-CeEEEEeCCCeeEEEeCCCCCCCEE
Confidence 4455666 899999999999888 9999999999644 4679999999986443 3333345567899999999999999
Q ss_pred EEEEEEecCCCCCCCC
Q psy7039 84 QFQVRAVNAAGPGEAS 99 (516)
Q Consensus 84 ~~~~~a~n~~g~~~~s 99 (516)
.|+|+|.|..|.+.++
T Consensus 85 ~~~V~A~n~~G~g~~~ 100 (116)
T 2edb_A 85 VISLKAFNNAGEGVPL 100 (116)
T ss_dssp EEEEEEEETTEECSCE
T ss_pred EEEEEEEeCCccCCCC
Confidence 9999999999988754
No 407
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.25 E-value=3.3e-11 Score=94.50 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe-e
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ-T 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~-~ 191 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+. .
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~~~ 57 (99)
T 1g1c_A 5 APKIF-ERIQSQTVGQGSDAHFRVRVV--------------------------GKPDPECEWYKNGVKIERSDRIYWYWP 57 (99)
T ss_dssp EEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEEEEEE
T ss_pred CCceE-ecCcceEEcCCCcEEEEEEEE--------------------------EeCCCEEEEEECCEECCCCCCEEEEEc
Confidence 55565 566778899999999999999 9999999999999999877666543 3
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1g1c_A 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94 (99)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEE
Confidence 4567799999999999999999999999887665543
No 408
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4.7e-11 Score=95.00 Aligned_cols=89 Identities=21% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEE
Q psy7039 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQV 87 (516)
Q Consensus 9 ~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~ 87 (516)
..++.|++|.+|++..++++++.|+|.+|. ..++.|.+|+|+|+..+. .|.... ...+++.|.+|++++.|.|+|
T Consensus 3 s~~~~P~~P~~l~~~~~~~~si~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V 78 (106)
T 2ed8_A 3 SGSSGPGPVENLQAVSTSPTSILITWEPPA-YANGPVQGYRLFCTEVSTGKEQNIE---VDGLSYKLEGLKKFTEYSLRF 78 (106)
T ss_dssp CCCCCCCCCEEEEEECSSTTEEEEEEECCS-SCSSCCCEEEEEEEETTTCCEEEEE---ECSSCEEEESCCTTCEEEEEE
T ss_pred CCCCCCcCCceeEEEecCCCEEEEEECCCC-CCCCCeeEEEEEEEECCCCceEEEe---CCccEEEECCCCCCCEEEEEE
Confidence 457899999999999999999999999986 344579999999998766 564432 247899999999999999999
Q ss_pred EEecCCCCCCCCCC
Q psy7039 88 RAVNAAGPGEASKP 101 (516)
Q Consensus 88 ~a~n~~g~~~~s~~ 101 (516)
+|.|..|.+.++..
T Consensus 79 ~A~n~~G~g~~S~~ 92 (106)
T 2ed8_A 79 LAYNRYGPGVSTDD 92 (106)
T ss_dssp EEECSSCEEEECCC
T ss_pred EEEeCCccCCCcCC
Confidence 99999998776543
No 409
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.25 E-value=5e-11 Score=114.32 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCC-cCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGL-IEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~~~a 89 (516)
..+|++|.+|.+.....+++.|+|.+|. +++. +.+|.|+++..++.+..+........++.|.+| .++..|.|+|.|
T Consensus 101 ~~~P~~P~~l~~~~~~~~~v~l~W~~~~-~~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A 178 (303)
T 1i1r_A 101 GLPPEKPKNLSCIVNEGKKMRCEWDGGR-ETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 178 (303)
T ss_dssp ECCCCCCEEEEEEEETTSCCEEEEECCS-CCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEE
T ss_pred cCCCCCCeeeEEEECCCCcEEEEccCCC-CCCC-CcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEE
Confidence 4689999999999888899999999985 3443 679999998765433233334456789999999 999999999999
Q ss_pred ecCCCCCCC
Q psy7039 90 VNAAGPGEA 98 (516)
Q Consensus 90 ~n~~g~~~~ 98 (516)
.|..|.+.+
T Consensus 179 ~N~~G~~~s 187 (303)
T 1i1r_A 179 ENALGKVTS 187 (303)
T ss_dssp EETTEEEEC
T ss_pred EcCCCCccc
Confidence 999987653
No 410
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.24 E-value=2.3e-10 Score=106.69 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=67.1
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecCCC-------------cceeEEEEEecCCC-CCCCCceeeeccCCeeEEEecCCC
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDYGI-------------DMADIEVVVVSKPG-PPTGPIDYTTVTPESVSMSWKPPV 343 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~g~-------------~~~~~~l~v~~~p~-~p~~p~~~~~~~~~~~~l~W~~p~ 343 (516)
....|.|.+++.+|+|.|.|.+.+..|. ......|.|...+. +|. +.+
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~--v~~---------------- 138 (257)
T 3bn9_D 77 NTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPS--VFP---------------- 138 (257)
T ss_dssp TEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCE--ECC----------------
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCc--EEE----------------
Confidence 4568999999999999999999987651 11234666664221 111 000
Q ss_pred CCCCCceeeccccccccccccEEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCC----eEEEEEcC
Q psy7039 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSEN----QTIYRNKS 417 (516)
Q Consensus 344 ~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~----~~~l~i~~ 417 (516)
......+..|..+.|.|.+.|. |.+ .|.|++++..+...........++ .+.|.|..
T Consensus 139 -----------------~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~ 201 (257)
T 3bn9_D 139 -----------------LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 201 (257)
T ss_dssp -----------------CCC-----------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC-
T ss_pred -----------------ecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcc
Confidence 0011134678899999999986 777 899999887532110000111111 24578888
Q ss_pred ceecCCceEEEEEEEcCCCceeE
Q psy7039 418 AKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 418 ~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+.. .+ |.|+|.|.|.......
T Consensus 202 ~~~-~~-g~YtC~v~n~~~~~~~ 222 (257)
T 3bn9_D 202 SSL-GT-QTYICNVNHKPSNTKV 222 (257)
T ss_dssp --------CEEEEEEEGGGTEEE
T ss_pred ccc-CC-CeEEEEEEecCCCcCE
Confidence 877 77 9999999997654433
No 411
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.24 E-value=4.1e-11 Score=95.48 Aligned_cols=90 Identities=28% Similarity=0.419 Sum_probs=75.9
Q ss_pred cCCCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 8 ~~~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
++.++.|++|. +.+...++++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ......++++|.+|++++.|.|+
T Consensus 2 ~T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~ 78 (107)
T 2dn7_A 2 SSGSSGPGRPT-MMISTTAMNTALLQWHPPK-ELPGELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFR 78 (107)
T ss_dssp TTCCCCCCCCE-EEEEECSTTEEEEEEECCS-SCSSCCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEE
T ss_pred CCCCCCCCCCc-EeEEecCCCEEEEEECCCC-CCCCceeEEEEEEEECCCCCCEEE-EeCCCccEEEeCCCCCCCEEEEE
Confidence 46788999888 7888788999999999986 555679999999998766 67654 44467889999999999999999
Q ss_pred EEEecCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASK 100 (516)
Q Consensus 87 ~~a~n~~g~~~~s~ 100 (516)
++|.|..|.+.++.
T Consensus 79 V~A~n~~G~g~~s~ 92 (107)
T 2dn7_A 79 LAAKNRAGLGEEFE 92 (107)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEcCCcccCCee
Confidence 99999999887654
No 412
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=94.34 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCccccCcccc--eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEe
Q psy7039 113 APRIDRSTLND--VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~--~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 190 (516)
||.|. .+... +.+.+|+.+.|.|.+. + |.+.+.|++++..+....++.+.
T Consensus 4 P~~i~-~p~~~~~v~~~~g~~v~l~C~v~--------------------------~-p~~~v~W~k~g~~i~~~~~~~i~ 55 (91)
T 2lvc_A 4 PVHIV-DPREHVFVHAITSECVMLACEVD--------------------------R-EDAPVRWYKDGQEVEESDFVVLE 55 (91)
T ss_dssp CCCCC-BCCSCEEEECCTTCCEEEEEECS--------------------------C-TTSCCEEEETTSCCCCCSSCEEE
T ss_pred CcEEe-ccCCCeEEEEECCCcEEEEEEEC--------------------------C-CCcEEEEEECCEEeeeeeeeeEE
Confidence 44444 44444 4456899999999987 6 77889999999999999999998
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
..+...+|.|.+++.+|+|.|+|.+.|.
T Consensus 56 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 56 NEGPHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred ecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence 8888899999999999999999998764
No 413
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.24 E-value=3.6e-11 Score=110.87 Aligned_cols=171 Identities=14% Similarity=0.173 Sum_probs=112.4
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeE-----EeEEeecCCcEEEeCCCcCCCeEEEEEEEecCCCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-----KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s 99 (516)
.....+.|.+.... .+. -.+.|...+.... ..........+|.|.+++..|.|.|+|.|.|..|....
T Consensus 28 ~~G~~v~L~C~~~~----~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~- 100 (241)
T 3grw_A 28 PAANTVRFRCPAAG----NPT--PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ- 100 (241)
T ss_dssp ETTSEEEEECCEEC----SSC--CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEE-
T ss_pred cCCCeEEEEEEecC----CCC--ceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEE-
Confidence 45677888887631 111 1344444332100 00112234668999999999999999999987664321
Q ss_pred CCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEee--
Q psy7039 100 KPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSI-- 176 (516)
Q Consensus 100 ~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~-- 176 (516)
...+.+. ....+|.+....+....+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus 101 --~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~--------------------------~~p~p~v~W~~~~ 152 (241)
T 3grw_A 101 --TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY--------------------------SDAQPHIQWLKHV 152 (241)
T ss_dssp --EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEE--------------------------CSSCCEEEEEEEC
T ss_pred --EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEe--------------------------cCCCCEEEEEEcc
Confidence 1222222 1223344433456677889999999999999 99999999999
Q ss_pred --CCeeeccCCceEEe--------ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeec
Q psy7039 177 --NGQVCQIGGRADVQ--------TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230 (516)
Q Consensus 177 --~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~ 230 (516)
++..+......... .......|.|.+++.+|+|.|+|.+.|..|.......+.+
T Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V 216 (241)
T 3grw_A 153 EVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216 (241)
T ss_dssp CSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC
T ss_pred cCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEe
Confidence 77766544332111 1223568999999999999999999999988766655443
No 414
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.24 E-value=4.6e-11 Score=93.72 Aligned_cols=90 Identities=27% Similarity=0.460 Sum_probs=75.9
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeec--cCCceEEe
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ--IGGRADVQ 190 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~--~~~~~~~~ 190 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+. ...++.+.
T Consensus 5 pP~i~-~~~~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~~ 57 (100)
T 3irg_A 5 PPKIE-ALPSDISIDEGKVLTVACAFT--------------------------GEPTPEVTWSCGGRKIHSQEQGRFHIE 57 (100)
T ss_dssp EEEEC-CCCSEEEEETTSEEEEEEEEE--------------------------EESCCEEEEEETTEECCTTGGGTEEEE
T ss_pred CCeee-cCCCcEEEcCCCcEEEEEEEE--------------------------EcCCCceEEEECCEEeecCCCCEEEEE
Confidence 45555 556778999999999999999 89999999999999886 34677777
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
..+...+|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 58 ~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 96 (100)
T 3irg_A 58 NTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96 (100)
T ss_dssp ECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ecCCEEEEEEeecCcccCEEEEEEEEeCCCcEEEEEEEE
Confidence 777788999999999999999999999988876655443
No 415
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.3e-10 Score=91.85 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=72.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
...|++|.+|++..++++++.|+|.+|. +.++.|.+|+|+|...++ .+..........++++|.+|++++.|.|+++|
T Consensus 5 ~t~~~~P~~l~v~~~t~~Sv~lsW~~p~-~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A 83 (103)
T 3t04_D 5 SSVSSVPTKLEVVDATPTSLKISWDAYY-SSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYA 83 (103)
T ss_dssp SCCCCCCCSCEEEEEETTEEEEECTTTT-TTSCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEE
T ss_pred cccCCCCceeEEEecCCCEEEEEccCCC-CCCCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 3568999999999999999999999985 445679999999998653 33344456677899999999999999999999
Q ss_pred ecC--CCCCC
Q psy7039 90 VNA--AGPGE 97 (516)
Q Consensus 90 ~n~--~g~~~ 97 (516)
.|. .|.+.
T Consensus 84 ~~~~~~G~~~ 93 (103)
T 3t04_D 84 YDTFFPGYEP 93 (103)
T ss_dssp ESCCCTTCCC
T ss_pred EeCCCCCCCC
Confidence 999 87766
No 416
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.24 E-value=7.1e-11 Score=92.73 Aligned_cols=87 Identities=21% Similarity=0.335 Sum_probs=74.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCce-EEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI-KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~-~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+. ......+...|.|.++.. .|+|.|+|.|.|..|..+.
T Consensus 12 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 90 (100)
T 2kdg_A 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA-SDAGAYACVAKNRAGEATF 90 (100)
T ss_dssp CCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCeEEE
Confidence 45678999999999999999999999999999888655433 333345556899999999 9999999999999999999
Q ss_pred EEEEEEecC
Q psy7039 441 SCKVYVVDK 449 (516)
Q Consensus 441 s~~l~v~~~ 449 (516)
++.|.|..+
T Consensus 91 ~~~l~V~~~ 99 (100)
T 2kdg_A 91 TVQLDVLAK 99 (100)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEec
Confidence 999998765
No 417
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.24 E-value=2.6e-11 Score=101.28 Aligned_cols=86 Identities=33% Similarity=0.640 Sum_probs=74.8
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECC----------------------------eec-CCCCceEEEEcCCeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG----------------------------DEV-SPDGRIKFETSENQT 411 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~----------------------------~~l-~~~~~~~~~~~~~~~ 411 (516)
.+.++.+..|+.+.|.|.+.|.|.|.|.|++++ ..+ ....++.+...+..+
T Consensus 24 ~p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s 103 (139)
T 1gxe_A 24 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS 103 (139)
T ss_dssp CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred CCCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEE
Confidence 456788999999999999999999999999998 444 345677777667778
Q ss_pred EEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe
Q psy7039 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447 (516)
Q Consensus 412 ~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~ 447 (516)
.|.|.++.. .|+|.|+|.|.|..|....++.|.|.
T Consensus 104 ~L~I~~v~~-~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 104 IFTVEGAEK-EDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EEECSCCCT-TTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEECCCCc-ccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 999999999 99999999999999999888888875
No 418
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.24 E-value=4.8e-11 Score=108.18 Aligned_cols=176 Identities=10% Similarity=-0.005 Sum_probs=94.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc--CceeeEEeeCC-eee---ccCCceEEeecC
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE--PFLNHGWSING-QVC---QIGGRADVQTTK 193 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~i~W~~~~-~~~---~~~~~~~~~~~~ 193 (516)
.+..+.+.+|+++.|.|.+.+ .......+.|++... ....+.+...+ ... ....|+.+...+
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~------------~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 72 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSG------------FSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTS 72 (215)
T ss_dssp EECCCEECTTCCEEEEEEEES------------SCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECS
T ss_pred cCCCEEEcCCCcEEEEEEecC------------cccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeC
Confidence 345678999999999999971 001123344433210 00111111111 100 123567766666
Q ss_pred CeeEEEeccCCCCCCeeEEEEEEcCCCc------eEEEEEee-----ceee----eeccccCCceEEEEEEEEccCCCC-
Q psy7039 194 SETVLDIPFCSRSDTGHYSLTLENNLGT------ATASAHVT-----GTEF----TDNNVHEGKAYEYRVSAVNAAGTE- 257 (516)
Q Consensus 194 ~~~~l~i~~~~~~d~g~Y~c~~~~~~g~------~~~~~~~~-----~~~~----~~~~l~~g~~~~~~~~~~~~~g~p- 257 (516)
...+|.|.+++.+|+|.|.|.+.+..+. ....+.+. ...+ ....+.+|..+.+.|.+ .|.+
T Consensus 73 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~---~~~~p 149 (215)
T 3nl4_H 73 TTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLV---KGYLP 149 (215)
T ss_dssp SEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEE---EEEBS
T ss_pred CEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEE---eeeeC
Confidence 7789999999999999999999987542 11112221 0111 12235679999999998 4433
Q ss_pred -Cceeccccccc--ceEE-EEEecceeeEEE---ccCCCCCceEEEEEEEecCCCcceeEE
Q psy7039 258 -KPKISLDALIG--KRIK-EFVTSTTASLNI---KNSVRKDSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 258 -~p~i~W~~~~~--~~~~-~~~~~~~~~l~i---~~l~~~d~g~y~c~a~n~~g~~~~~~~ 311 (516)
...+.|.+... .... .......+.+.+ ..+...| |.|+|.|.|..+.......
T Consensus 150 ~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~ 209 (215)
T 3nl4_H 150 EPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKT 209 (215)
T ss_dssp SCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEE
T ss_pred CCeEEEEeeCCEECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEe
Confidence 34577976321 0000 001122333443 4566677 9999999998876544433
No 419
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.23 E-value=1.4e-11 Score=111.19 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=71.7
Q ss_pred eEEEccCCCCCceEEEEEEEecCCCcceeEEEEEe-cCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV-SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 281 ~l~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
.|.|.+++.+|+|.|+|.|.|..+.......+.+. ....+|. +.+. ++
T Consensus 69 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~--v~~~------------~~----------------- 117 (207)
T 2vol_A 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQ--VYTL------------PP----------------- 117 (207)
T ss_dssp EEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCE--EEEE------------CC-----------------
T ss_pred EEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCe--EEEe------------CC-----------------
Confidence 57788888888999999998877754222222110 1111110 0000 00
Q ss_pred cccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcC-Ce----EEEEEcCceecCCceEEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSE-NQ----TIYRNKSAKRATDSGSYTIQLV 432 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~-~~----~~l~i~~~~~~~~~g~y~c~a~ 432 (516)
... ...|+.+.|.|.+.|.+++ .+.|+++|..+............ +. +.|.|..... ++.|.|+|.|.
T Consensus 118 -~~~---~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~-~~~g~ytC~a~ 192 (207)
T 2vol_A 118 -PKE---QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNW-EAGNTFTCSVL 192 (207)
T ss_dssp -CTG---GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHH-SSCCEEEEEEE
T ss_pred -CHH---HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHc-CCCCEEEEEEE
Confidence 000 1258899999999986443 89999999877432211111111 11 2456666666 68999999999
Q ss_pred cCCCce
Q psy7039 433 NTVGSD 438 (516)
Q Consensus 433 n~~G~~ 438 (516)
|.....
T Consensus 193 n~~l~~ 198 (207)
T 2vol_A 193 HEGLHN 198 (207)
T ss_dssp CTTSGG
T ss_pred CCCCCC
Confidence 987643
No 420
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.23 E-value=5.3e-11 Score=108.25 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=101.5
Q ss_pred eeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEe-EE--eecCCc--EEEeCCCcCCCeEEEEEEEecCCCCCCCC
Q psy7039 25 WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-VV--VPAGET--SCTVPGLIEGETYQFQVRAVNAAGPGEAS 99 (516)
Q Consensus 25 ~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~-~~--~~~~~~--~~~i~~l~~~~~y~~~~~a~n~~g~~~~s 99 (516)
...+.+.|.+.... . ... +.|...+...... .. ...... .|.|.+++..|.|.|+|.|.|..|.+..+
T Consensus 21 ~~G~~vtL~C~~~~---~--~~~--~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s 93 (218)
T 1uct_A 21 PLDGSVKIQCQAIR---E--AYL--TQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYS 93 (218)
T ss_dssp ETTCCEEEEECCCT---T--CSE--EEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEEC
T ss_pred CCCCCEEEEEEcCC---C--CCE--EEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeec
Confidence 45678999998731 1 122 3343333321110 00 112344 89999999999999999999976533322
Q ss_pred CCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCe
Q psy7039 100 KPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQ 179 (516)
Q Consensus 100 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~ 179 (516)
. ...+.+.....+|.+. ..+ ...+.+|+.++|.|... +.+.+.+.|++++.
T Consensus 94 ~-~~~l~V~~~~~~P~i~-~~p-~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~W~k~g~ 144 (218)
T 1uct_A 94 D-TLELVVTGLYGKPFLS-ADR-GLVLMPGENISLTCSSA--------------------------HIPFDRFSLAKEGE 144 (218)
T ss_dssp C-CEEEEEECSSCCCEEE-ESS-CSEECTTCCCEEEEECS--------------------------SSCCSEEEEEETTC
T ss_pred C-CEEEEEcCcccCCEEE-eCC-CCccCCCCCEEEEEeCC--------------------------CCCCCEEEEEECCC
Confidence 2 2333333333466664 222 45788999999999767 67778999999987
Q ss_pred eeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 180 VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+... .........|.|.+++.+|+|.|+|.+.|..
T Consensus 145 ~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 145 LSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp SSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred ccccc----ccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 66531 1124456799999999999999999998753
No 421
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.23 E-value=1.9e-11 Score=112.36 Aligned_cols=160 Identities=10% Similarity=-0.001 Sum_probs=102.1
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-ce-eeEEeeCC--eee------------ccC
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-FL-NHGWSING--QVC------------QIG 184 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~-~i~W~~~~--~~~------------~~~ 184 (516)
+..+.+.+|+.+.|.|.+. +.+ .+ .+.|+++. ..+ ...
T Consensus 26 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 79 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGS--------------------------SSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVP 79 (234)
T ss_dssp CSCCCBCTTCEEEEEEECC--------------------------TTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSC
T ss_pred CCcEEeeCCCcEEEEEEec--------------------------CCCCCCCeEEEEEecCCCCcEEEEECccccCCCcc
Confidence 5567789999999999998 543 23 58887742 111 112
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCce--E-EEEEeec-------eeeee----ccccCCceEEEEEEE
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA--T-ASAHVTG-------TEFTD----NNVHEGKAYEYRVSA 250 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~--~-~~~~~~~-------~~~~~----~~l~~g~~~~~~~~~ 250 (516)
.|+.....+...+|.|.+++.+|+|.|.|.+.+..+.. . ....+.+ ..+.. .....|..+.+.|.+
T Consensus 80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~ 159 (234)
T 2j6e_L 80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI 159 (234)
T ss_dssp TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence 46666555667799999999999999999999887621 1 1111111 01111 112347789999988
Q ss_pred EccCCC-CC-ceeccccccc---ceEEE---EEe-----cceeeEEEccCCCCCceEEEEEEEecCCCccee
Q psy7039 251 VNAAGT-EK-PKISLDALIG---KRIKE---FVT-----STTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309 (516)
Q Consensus 251 ~~~~g~-p~-p~i~W~~~~~---~~~~~---~~~-----~~~~~l~i~~l~~~d~g~y~c~a~n~~g~~~~~ 309 (516)
.|. |+ +.+.|.+... ..... ... .....|.|..+..+|.|.|+|.|.|..+....+
T Consensus 160 ---~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 160 ---SDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp ---CBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred ---EEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 554 43 4899965211 11110 000 122468899999999999999999987664433
No 422
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.23 E-value=8.3e-11 Score=106.08 Aligned_cols=127 Identities=5% Similarity=0.007 Sum_probs=88.9
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
..+|.|.+++..|.|.|.|.+.+..+...... ..+.... ++...........+..|+.+.+.|.+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~c~~~--------- 143 (218)
T 4frw_A 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQAR--LRLRVLV---PPLPSLNPGPALEEGQGLTLAASCTAE--------- 143 (218)
T ss_dssp BCCEEESSCCGGGCEEEEEEEEEETTEEEEEE--EEEEEEB---CCCCEEEECSCEETTCCSEEEEEEEEE---------
T ss_pred eEEEEEeeccHHHCCceeEEEEeccCceeeeE--EEEEEee---eccceeeeeeeeeeeeccccceeeecc---------
Confidence 45799999999999999999987655432211 1111111 111111344556778899999999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT-TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
+.|.+.|+|++++..+.......... ....+.|.|.++..+|.|.|+|.+.|..|......
T Consensus 144 -----------------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~ 205 (218)
T 4frw_A 144 -----------------GSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI 205 (218)
T ss_dssp -----------------EBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE
T ss_pred -----------------CCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEE
Confidence 99999999999988776433222211 11245799999999999999999999988765443
No 423
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=99.99 Aligned_cols=98 Identities=27% Similarity=0.408 Sum_probs=79.8
Q ss_pred CcceeccCCCCCCC-CCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCC
Q psy7039 2 DHSVLIKNPFDEPG-KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPG 76 (516)
Q Consensus 2 ~~~~~~~~~~~~p~-~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~ 76 (516)
|+.+.+++..+.|. +|.+|++..++.++|.|+|.+|. +.++.|.+|.|+|+..+. .|... .....+++.|.+
T Consensus 6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~~i~~ 82 (121)
T 2dlh_A 6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE-EPNGQIQGYRVYYTMDPTQHVNNWMKH--NVADSQITTIGN 82 (121)
T ss_dssp CSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCS-CCCSCEEEEEEECCSCTTSCTTTSCCC--CCSSCSEECCBS
T ss_pred CCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCC-CCCCcEeEEEEEEEeCCCCCccccEEE--ecCCceEEEecC
Confidence 66788889988875 99999999999999999999985 455679999999987543 23222 123678899999
Q ss_pred CcCCCeEEEEEEEecCCCCCCCCCCC
Q psy7039 77 LIEGETYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 77 l~~~~~y~~~~~a~n~~g~~~~s~~~ 102 (516)
|++++.|.|+|+|.|..|.+.++...
T Consensus 83 L~p~t~Y~~~V~A~n~~G~g~~S~~~ 108 (121)
T 2dlh_A 83 LVPQKTYSVKVLAFTSIGDGPLSSDI 108 (121)
T ss_dssp CCSSCEEEEEEEEEESSCBCCCCCCE
T ss_pred CCCCCEEEEEEEEEeCCccCCCCCCE
Confidence 99999999999999999998876543
No 424
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.22 E-value=1.5e-10 Score=90.72 Aligned_cols=86 Identities=28% Similarity=0.573 Sum_probs=76.0
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecC--CCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS--PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+. ...++.+........|.|.++.. .|.|.|+|.|.|..|..+
T Consensus 12 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~ 90 (100)
T 3irg_A 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTLSLGNEFGSDS 90 (100)
T ss_dssp CSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCG-GGCEEEEEEEEETTEEEE
T ss_pred CCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCc-ccCEEEEEEEEeCCCcEE
Confidence 456789999999999999999999999999998875 45677777777778999999999 999999999999999988
Q ss_pred EEEEEEEec
Q psy7039 440 ASCKVYVVD 448 (516)
Q Consensus 440 ~s~~l~v~~ 448 (516)
..+.|.|..
T Consensus 91 ~~~~l~V~~ 99 (100)
T 3irg_A 91 ATVNIHIRS 99 (100)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEe
Confidence 888888763
No 425
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.22 E-value=1.2e-10 Score=91.26 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=73.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC-ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~-~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++.....+....|.|.++.. .|.|.|+|.|.|..|....
T Consensus 12 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~g~~~~ 90 (99)
T 1u2h_A 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER-GDAGFYTCKAVNEYGARQC 90 (99)
T ss_dssp CCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCc-CCCEEEEEEEEECCCceeE
Confidence 455688999999999999999999999999998886543 45555555666899999999 9999999999999999988
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|.+
T Consensus 91 ~~~l~V~~ 98 (99)
T 1u2h_A 91 EARLEVRG 98 (99)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888864
No 426
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=99.22 E-value=5.3e-11 Score=92.98 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
..|++|.+|++..++++++.|+|.+|. +.|.+|+|.|...++ .+..........++++|.+|++++.|.|+++|.
T Consensus 3 t~~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~ 78 (97)
T 3qht_C 3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAY 78 (97)
T ss_dssp --CCSSSSCEEEEEETTEEEEECCCCC----SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCCCCceEEEecCCCEEEEEEeCCC----CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 368899999999999999999999973 468999999998665 334444566788999999999999999999999
Q ss_pred cCCCCCCCCC
Q psy7039 91 NAAGPGEASK 100 (516)
Q Consensus 91 n~~g~~~~s~ 100 (516)
+..|.+..+.
T Consensus 79 ~~~G~gp~ss 88 (97)
T 3qht_C 79 YSYYDLYYSY 88 (97)
T ss_dssp EEETTEEEEC
T ss_pred eCCccCCCCC
Confidence 9998875443
No 427
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.22 E-value=5.4e-11 Score=92.13 Aligned_cols=83 Identities=34% Similarity=0.569 Sum_probs=70.7
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECC--eecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG--DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~--~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
+..+.+..|+.+.|.|.+.|.|.|.+.|++++ ..+... ...........|.|.++.. .|+|.|+|.|.|..|..+
T Consensus 9 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~~~ 85 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELGEDE 85 (93)
T ss_dssp CCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEEETTEEEEECTTBCG-GGCEEEEEEEEETTEEEE
T ss_pred CCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEecCCEEEEEECCCCh-hcCEEEEEEEEcCCCeEE
Confidence 45678999999999999999999999999999 777544 3333445668899999999 999999999999999988
Q ss_pred EEEEEEEe
Q psy7039 440 ASCKVYVV 447 (516)
Q Consensus 440 ~s~~l~v~ 447 (516)
.++.|.|+
T Consensus 86 ~~~~l~V~ 93 (93)
T 1wit_A 86 AIFEVIVQ 93 (93)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
Confidence 88888763
No 428
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.22 E-value=2.2e-12 Score=118.65 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=84.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceecccccc-cc------------------eEEEEEecceeeEEEccCCCCCceEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-GK------------------RIKEFVTSTTASLNIKNSVRKDSGIYK 296 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-~~------------------~~~~~~~~~~~~l~i~~l~~~d~g~y~ 296 (516)
..+.+|+.+.+.|.+ .|.+.+.+.|.+.. +. ++..........|.|.+++.+|+|.|+
T Consensus 33 ~~v~~G~~v~L~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 109 (233)
T 3bqu_C 33 LSMSIGEKVTIRCIT---STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY 109 (233)
T ss_dssp C-------CCEEEEE---EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred EEEecCCCEEEEEec---CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence 356789999999987 55566789995421 11 111111223448999999999999999
Q ss_pred EEEEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEE
Q psy7039 297 IEAKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375 (516)
Q Consensus 297 c~a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l 375 (516)
|.+.|..+.. .....+.|...+.+|. +.+. ........|+.+.|
T Consensus 110 C~~~~~~~~~~~~~~~l~V~~~~~~p~--v~~~---------------------------------~~~~~~~~g~~v~L 154 (233)
T 3bqu_C 110 CLQSDNLPYTFGGGTNLEIKRADAAPT--VSIF---------------------------------PPSSEQLTSGGASV 154 (233)
T ss_dssp EEECSSSSCCBCCCCBC---CCCBCCE--EEEE---------------------------------CCCHHHHHTTEEEE
T ss_pred EEEecCCceeecCCEEEEEeCCCCCCE--EEEe---------------------------------CCCHHhhcCCceEE
Confidence 9999876532 2223455543222211 0000 00011236889999
Q ss_pred EEEEeeecCC--ceEEEECCeecCCCCceE--EEEcC-----CeEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 376 TVPFSGRPKP--TPIWTVNGDEVSPDGRIK--FETSE-----NQTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 376 ~C~~~g~p~~--~i~W~~~~~~l~~~~~~~--~~~~~-----~~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
.|.+.|.+++ .+.|++++..+..+.... ..... ....|.|..+.. +|.|.|+|.|.|....
T Consensus 155 ~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 155 VCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY-ERHNSYTCEATHKTST 224 (233)
T ss_dssp EEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHH-HTCCCEEEEEEEC---
T ss_pred EEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCCC
Confidence 9999986544 799999997764330000 00011 124688988888 8999999999998654
No 429
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.21 E-value=2.5e-11 Score=96.60 Aligned_cols=90 Identities=31% Similarity=0.444 Sum_probs=78.1
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+....++.+..
T Consensus 13 ~~~~i~-~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~g~~l~~~~~~~~~~ 65 (106)
T 1nct_A 13 LAARIL-TKPRSMTVYEGESARFSCDTD--------------------------GEPVPTVTWLRKGQVLSTSARHQVTT 65 (106)
T ss_dssp CCCEEE-ECCCCEEESSSSCEECCEEEE--------------------------CSSCCBCCBCSSSSCCTTCSSEEEEE
T ss_pred CCCEEE-ECCCCEEEeCCCcEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCEEEEE
Confidence 456665 667789999999999999999 99999999999999988888888877
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
......|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 66 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 102 (106)
T 1nct_A 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102 (106)
T ss_dssp CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEE
T ss_pred CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEE
Confidence 7778899999999999999999999998886655443
No 430
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.21 E-value=3.9e-10 Score=105.17 Aligned_cols=124 Identities=11% Similarity=0.095 Sum_probs=86.8
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCC----------CCCCCCCCCcceEeccCCC------------CCccccCcccceE
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAA----------GPGEASKPTAPIVAKPKNL------------APRIDRSTLNDVK 125 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~----------g~~~~s~~~~~~~~~~~~~------------~p~~~~~~~~~~~ 125 (516)
...+|+|.++++.|.|.|.|.|.|.. +..... ....+.+..... +|.+. ..+..+.
T Consensus 83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (256)
T 3juy_B 83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWG-KGTTVIVSSGGGGSGGGGSGGGGSEIVLT-QAPGTLS 160 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEEC-CCEEEEECSCC----------CCCCCCEE-EECSEEE
T ss_pred CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEEC-CceEEeecCCcccccccccCCCcceeEEE-ecCCeEE
Confidence 45679999999999999999998861 111111 122233332211 34444 5677789
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeC--Ceeec------------cCCceEEe
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSIN--GQVCQ------------IGGRADVQ 190 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~--~~~~~------------~~~~~~~~ 190 (516)
+.+|++++|.|.+. +.+. +.+.|++. +.... ...|+.+.
T Consensus 161 v~~G~~v~L~C~~~--------------------------~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 214 (256)
T 3juy_B 161 LSPGERATFSCRSS--------------------------HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGS 214 (256)
T ss_dssp ECTTSCEEEEEEES--------------------------SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE
T ss_pred EeCCCCEEEEEEEC--------------------------CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEE
Confidence 99999999999999 6665 78889872 22211 23566666
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
..+...+|.|.+++.+|+|.|.|.+.+..
T Consensus 215 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 243 (256)
T 3juy_B 215 GSGTDFTLTITRVEPEDFALYYCQVYGAS 243 (256)
T ss_dssp EETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred ccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence 66677889999999999999999998743
No 431
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.2e-11 Score=97.64 Aligned_cols=91 Identities=29% Similarity=0.411 Sum_probs=78.5
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE-cCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET-SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ..+...|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 16 ~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~ 94 (110)
T 2dm3_A 16 PGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS-RDAGIYTCIATNRAGQNSF 94 (110)
T ss_dssp CCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCG-GGCSBBCEEEECSSCEEEE
T ss_pred CCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCc-ccCEEEEEEEECCCCEEEE
Confidence 456789999999999999999999999999998886655444333 33456899999999 9999999999999999999
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|.|..+|.+|
T Consensus 95 ~~~l~V~~~p~~P 107 (110)
T 2dm3_A 95 SLELVVAAKESGP 107 (110)
T ss_dssp CCEEEEECCCCSS
T ss_pred EEEEEEeCCCCCC
Confidence 9999999988887
No 432
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.21 E-value=2.3e-11 Score=110.27 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=88.5
Q ss_pred EeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCcccc
Q psy7039 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSPLRA 151 (516)
Q Consensus 73 ~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~~ 151 (516)
.|.+++..|.|.|+|.|.|..|........+.+.. .+|.+. ..+....+.+|+.+.|.|.+ .
T Consensus 72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~----~~~~~~-~~~~~~~~~~g~~v~l~C~~~~------------ 134 (217)
T 2vr9_A 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV----LRDDFR-VEPKDTRVAKGETALLECGPPK------------ 134 (217)
T ss_dssp CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECE----ECCSCS-BCCCCEEECTTSCEEECCBCCC------------
T ss_pred EeccCCcccCceEEEEEecCCCccccccceEEEEE----eCCCcE-ECCCccEEcCCCeEEEEEECCC------------
Confidence 67889999999999999998775432222222222 233333 44556789999999999998 6
Q ss_pred ccccccCccceeecCcCceeeEEeeCCeeeccC--------CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 152 LGVRANSTKGWVKLSEPFLNHGWSINGQVCQIG--------GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 152 ~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+... .++.+. ....|.|.+++.+|+|.|+|.+.|..|...
T Consensus 135 --------------g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 197 (217)
T 2vr9_A 135 --------------GIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197 (217)
T ss_dssp --------------EESCCEEEEEETTEEECCCCCC---CCCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred --------------CCCCCeEEEEECCcCCCcccccccccCCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence 8899999999999988732 233332 234799999999999999999999988765
Q ss_pred EE
Q psy7039 224 AS 225 (516)
Q Consensus 224 ~~ 225 (516)
..
T Consensus 198 ~~ 199 (217)
T 2vr9_A 198 SS 199 (217)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 433
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.21 E-value=1.5e-09 Score=98.87 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=102.5
Q ss_pred eccccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEcc
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKN 286 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~ 286 (516)
...+.+|+.+.|.|.+ .+.+ .+.+.|.+.. + .++.+... .....|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAA---SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS 85 (223)
T ss_dssp CCEECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CEEEcCCCcEEEEEEe---cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence 3456789999999987 4433 4778896421 1 12222221 1356899999
Q ss_pred CCCCCceEEEEEEEecCCC------cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccc
Q psy7039 287 SVRKDSGIYKIEAKNDYGI------DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359 (516)
Q Consensus 287 l~~~d~g~y~c~a~n~~g~------~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~ 359 (516)
++.+|+|.|.|.+.+..|. ......|.|...+ .+|. +...
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--i~~~------------------------------- 132 (223)
T 1dee_B 86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPT--LFPL------------------------------- 132 (223)
T ss_dssp CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCE--EEEE-------------------------------
T ss_pred CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCE--EEEe-------------------------------
Confidence 9999999999999987531 1123466666422 1110 0000
Q ss_pred cccccEEEEcCCeEEEEEEEeee-cCC-ceEEEE-CCeecCCCCceE-EEEcCC---eEEEEEcCcee-cCCceEEEEEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGR-PKP-TPIWTV-NGDEVSPDGRIK-FETSEN---QTIYRNKSAKR-ATDSGSYTIQL 431 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~-p~~-~i~W~~-~~~~l~~~~~~~-~~~~~~---~~~l~i~~~~~-~~~~g~y~c~a 431 (516)
.....+..|+.+.|.|.+.+. |.+ .+.|++ ++..+.....+. ....+. .+.|.|..... .+|.|.|+|.|
T Consensus 133 --~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v 210 (223)
T 1dee_B 133 --VSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKV 210 (223)
T ss_dssp --ECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEE
T ss_pred --cCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEE
Confidence 000123578999999999987 766 999999 887764300000 000111 23577755431 03579999999
Q ss_pred EcCCCceeEE
Q psy7039 432 VNTVGSDSAS 441 (516)
Q Consensus 432 ~n~~G~~s~s 441 (516)
.|..|.....
T Consensus 211 ~n~~~~~~~~ 220 (223)
T 1dee_B 211 QHPNGNKEKD 220 (223)
T ss_dssp ECTTCCEEEE
T ss_pred EeCCCCCccc
Confidence 9999876543
No 434
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A
Probab=99.21 E-value=2.9e-09 Score=106.89 Aligned_cols=98 Identities=23% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCC-----CceeceEEEEEeCCCCeEEeEEeecCCcEEEeC--CCcCCCeEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGG-----SPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP--GLIEGETYQ 84 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~--~l~~~~~y~ 84 (516)
..|+||.+|++.... +.+.|+|.+|..... ...+.|.|+|+..+..|............+.+. +|.++..|.
T Consensus 107 v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~ 185 (419)
T 2gys_A 107 VQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV 185 (419)
T ss_dssp BCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred ccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCCCChhheeeecccceEEEechhhcCCCCeEE
Confidence 479999999998665 799999999854321 246899999998766776554433345555665 999999999
Q ss_pred EEEEEecCC---CCCCCCCCCcceEeccC
Q psy7039 85 FQVRAVNAA---GPGEASKPTAPIVAKPK 110 (516)
Q Consensus 85 ~~~~a~n~~---g~~~~s~~~~~~~~~~~ 110 (516)
++|+|.+.. +.+.+|..+..+.....
T Consensus 186 ~rVra~~~~g~~~~G~wS~WS~~~~~~t~ 214 (419)
T 2gys_A 186 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 214 (419)
T ss_dssp EEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred EEEEEecCCCCCCCcccCCCCCceeeecc
Confidence 999999964 34677776666665443
No 435
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.21 E-value=1.2e-10 Score=93.96 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=73.7
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCC-CCCCCceeceEEEEEeCCCC---eEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPI-SDGGSPITGYVVEMKDKTGN---WEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
..+|++|.++++..+++++|.|+|.+|. ...++.|.+|.|+|+..+.. +..........++++|.+|++++.|.|+
T Consensus 6 ~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 85 (114)
T 1x4y_A 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIK 85 (114)
T ss_dssp CSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEE
T ss_pred cCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEE
Confidence 4567899999999999999999999985 24567899999999875442 2222234456788999999999999999
Q ss_pred EEEecCCCCCCCCCCC
Q psy7039 87 VRAVNAAGPGEASKPT 102 (516)
Q Consensus 87 ~~a~n~~g~~~~s~~~ 102 (516)
|+|.|..|.+..+...
T Consensus 86 V~A~n~~G~g~~S~~v 101 (114)
T 1x4y_A 86 MQCFNEGGESEFSNVM 101 (114)
T ss_dssp EEEECTTCCCCCCCCE
T ss_pred EEEEcCCccCCCcCCE
Confidence 9999999998876543
No 436
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=99.20 E-value=5.1e-11 Score=93.68 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=68.7
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC--CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
+|++|.+|++..+++++|.|+|.+|. ..|.+|.|+|+..+. .+. ........++++|.+|++++.|.|+|+|.
T Consensus 1 ~p~~P~~l~~~~~~~~sv~lsW~pP~----~~i~~Y~v~y~~~~~~~~~~-~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~ 75 (100)
T 3b83_A 1 MLQPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDET-TVDLTSSITSLTLTNLEPNTTYEIRIVAR 75 (100)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEESSCTTTCE-EEEECTTEEEEEECSCCTTCEEEEEEEEE
T ss_pred CCccCCccEEEEecCCEEEEEEcCCc----ccCCEEEEEEEECCCCCCce-EEEECCcceEEEECCCCCCCEEEEEEEEE
Confidence 58999999999999999999999984 269999999987553 333 23455678999999999999999999999
Q ss_pred cCCCCCCCC
Q psy7039 91 NAAGPGEAS 99 (516)
Q Consensus 91 n~~g~~~~s 99 (516)
|..|.+.++
T Consensus 76 n~~g~s~p~ 84 (100)
T 3b83_A 76 NGQQYSPPV 84 (100)
T ss_dssp ETTEECCCE
T ss_pred eCCCCCCCE
Confidence 998877654
No 437
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.20 E-value=5.8e-12 Score=115.76 Aligned_cols=158 Identities=9% Similarity=0.081 Sum_probs=86.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--eee------------ccC
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING--QVC------------QIG 184 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~--~~~------------~~~ 184 (516)
..+..+.+.+|+++.|.|.+. +.+.+.+.|++++ ... ...
T Consensus 28 ~~p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 81 (233)
T 3bqu_C 28 QSPASLSMSIGEKVTIRCITS--------------------------TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVP 81 (233)
T ss_dssp EECSBC-------CCEEEEEE--------------------------EEESSCEEEEEECTTSCCEEEECTTSCBCTTSC
T ss_pred EcCCeEEEecCCCEEEEEecC--------------------------CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCC
Confidence 345667889999999999998 6666778998743 111 012
Q ss_pred CceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEE---EEEeec----eeeee----ccccCCceEEEEEEEEcc
Q psy7039 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA---SAHVTG----TEFTD----NNVHEGKAYEYRVSAVNA 253 (516)
Q Consensus 185 ~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~---~~~~~~----~~~~~----~~l~~g~~~~~~~~~~~~ 253 (516)
.|+.+...+...+|.|.+++.+|+|.|.|.+.+..+.... .+.+.. ..+.. ....+|..+.+.|.+
T Consensus 82 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~--- 158 (233)
T 3bqu_C 82 SRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFL--- 158 (233)
T ss_dssp TTCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEE---
T ss_pred ccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEE---
Confidence 3444333344558999999999999999999886543211 111111 11111 112358899999998
Q ss_pred CC-CCCc-eecccccccc---e-EEEE-E--ec-----ceeeEEEccCCCCCceEEEEEEEecCCC
Q psy7039 254 AG-TEKP-KISLDALIGK---R-IKEF-V--TS-----TTASLNIKNSVRKDSGIYKIEAKNDYGI 305 (516)
Q Consensus 254 ~g-~p~p-~i~W~~~~~~---~-~~~~-~--~~-----~~~~l~i~~l~~~d~g~y~c~a~n~~g~ 305 (516)
.| .|++ .+.|.+.... . .... . .. ....|.|.....+|.|.|+|.|.|....
T Consensus 159 ~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 159 NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp EEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred ccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 44 3443 7999662211 1 1100 0 01 1246888888889999999999997544
No 438
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.20 E-value=5.5e-11 Score=94.67 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=77.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+..
T Consensus 12 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~i~W~~~~~~~~~~~~~~~~~ 64 (107)
T 3irg_B 12 SPPCFL-RFPRPVRVVSGAEAELKCVVL--------------------------GEPPPVVVWEKGGQQLAASERLSFPA 64 (107)
T ss_dssp EEEEEE-ECCCCEEEETTSCEEEEEEEE--------------------------EESCCEEEEEETTEECCCCSSEECCE
T ss_pred CCCeeE-cCCccEEEeCCCeEEEEEEEe--------------------------ecCCCEEEEEECCeECCCCCcEEEEe
Confidence 356665 566778999999999999999 89999999999999998888888777
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 65 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 101 (107)
T 3irg_B 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101 (107)
T ss_dssp ETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEccCCHHhCEEEEEEEEcCCCcEEEEEEE
Confidence 7777899999999999999999999988876655443
No 439
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.20 E-value=1.7e-10 Score=90.00 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=73.6
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCc-CceeeEEeeCCeeeccCCceEEeecCCeeE
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE-PFLNHGWSINGQVCQIGGRADVQTTKSETV 197 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 197 (516)
.++..+.+.+|+.+.|.|.+. +. |.+.+.|++++..+....++.+...+....
T Consensus 6 ~~~~~~~v~~G~~v~l~C~~~--------------------------g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 59 (97)
T 2bk8_A 6 GQIMHAVGEEGGHVKYVCKIE--------------------------NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59 (97)
T ss_dssp CCCCCEEECTTCCEEEEEEEE--------------------------SCCTTCEEEEEETTEECCSSSSEEEEEETTEEE
T ss_pred ccCcCEEEcCCCcEEEEEEEe--------------------------ccCCCCEEEEEECCEECcCCCCEEEEEcCCeEE
Confidence 455678899999999999999 86 899999999999998888888776777789
Q ss_pred EEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 198 l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 60 L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 90 (97)
T 2bk8_A 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90 (97)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEecCChhhCeEEEEEEECCCCeEeEEEEE
Confidence 9999999999999999999999987765544
No 440
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.20 E-value=6.8e-11 Score=96.06 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=71.0
Q ss_pred cCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcC-------CeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE-------NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 369 ~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~-------~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
.+..+.|.|.+.|.|.|.|.|+++|..+..+.++...... ....|.|.++.. .|+|.|+|.|.|..|....+
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-VNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCG-GGCEEEEEEEEETTEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCC-CCCEEEEEEEEECCCeEEEE
Confidence 5678889999999999999999999999877665443221 246799999999 99999999999999999999
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
+.|.|...|...
T Consensus 93 ~~l~v~~~P~~~ 104 (126)
T 1he7_A 93 IMAAFMDNPFEF 104 (126)
T ss_dssp EEECCCSCTTSC
T ss_pred EEEEEEcCCCCC
Confidence 999998777653
No 441
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.20 E-value=4.2e-10 Score=102.35 Aligned_cols=158 Identities=9% Similarity=-0.000 Sum_probs=101.6
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~ 60 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAAS--------------------------GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINY 60 (220)
T ss_dssp ECCEEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEE
T ss_pred CCCeEecCCCcEEEEEEec--------------------------CccCCCceEEEEEECCCCCeEEEEEEccCCCceec
Confidence 4458899999999999998 443 4567776632 11 1
Q ss_pred --ccCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCCce-----EEEEEeec-----eeee---eccccCCceE
Q psy7039 182 --QIGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLGTA-----TASAHVTG-----TEFT---DNNVHEGKAY 244 (516)
Q Consensus 182 --~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~-----~~~~~~~~-----~~~~---~~~l~~g~~~ 244 (516)
....|+.+... ....+|.|.+++.+|+|.|.|.+.+..+.. ...+.+.. ..+. ...+..|..+
T Consensus 61 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v 140 (220)
T 2fbj_H 61 TPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPV 140 (220)
T ss_dssp CTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSE
T ss_pred CCccCCcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcE
Confidence 01256666543 346799999999999999999998864321 11222221 0111 1235678999
Q ss_pred EEEEEEEccCCC-CC--ceecccccccceEEEE----Eec-c----eeeEEEccCCCCCceEEEEEEEecCCCcc
Q psy7039 245 EYRVSAVNAAGT-EK--PKISLDALIGKRIKEF----VTS-T----TASLNIKNSVRKDSGIYKIEAKNDYGIDM 307 (516)
Q Consensus 245 ~~~~~~~~~~g~-p~--p~i~W~~~~~~~~~~~----~~~-~----~~~l~i~~l~~~d~g~y~c~a~n~~g~~~ 307 (516)
.+.|.+. |. |. +.+.|.+......... ... . ...|.|......|.|.|+|.|.|..+...
T Consensus 141 ~L~C~~~---g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 141 IIGCLIH---DYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEEEE---EEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEEE---eEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 9999984 43 55 7899976322110000 001 1 12588888888899999999999987754
No 442
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.20 E-value=1.1e-10 Score=92.64 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
....|++|.+|++..++++++.|+|.+|. +.+.+|+|+|+..++.|..+ ......++++|.+|++++.|.|+++|
T Consensus 4 ~~t~p~~P~~l~v~~~~~~sv~lsW~~p~----~~i~~Y~i~y~~~~~~~~~~-~~~~~~ts~~l~~L~p~t~Y~~~V~A 78 (105)
T 2cum_A 4 GSSGLEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEI-LLPGGITSHQLLGLFPSTSYNARLQA 78 (105)
T ss_dssp CCTTCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEE-EECSSCSEEEECSCCTTCEEEEEEEE
T ss_pred cccCCCCCCceEEEeccCCEEEEEEcCCC----CccceEEEEEEeCCCceEEE-EECCCccEEEECCCCCCCEEEEEEEE
Confidence 45679999999999999999999999974 36899999999876666544 45567899999999999999999999
Q ss_pred ecCCCCCCC
Q psy7039 90 VNAAGPGEA 98 (516)
Q Consensus 90 ~n~~g~~~~ 98 (516)
.|..|.+.+
T Consensus 79 ~~~~g~s~~ 87 (105)
T 2cum_A 79 MWGQSLLPP 87 (105)
T ss_dssp EBTTBCCCC
T ss_pred EeCCcccCC
Confidence 998877664
No 443
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.20 E-value=1.9e-10 Score=105.35 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=99.5
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc----eeeEEeeC--Ceeec------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF----LNHGWSIN--GQVCQ------------ 182 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~i~W~~~--~~~~~------------ 182 (516)
+..+.+.+|+.+.|.|.+. +.+. +.+.|++. +..+.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~ 60 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFS--------------------------GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKR 60 (228)
T ss_dssp ECCSEECTTCCEEEEEEEE--------------------------SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEE
T ss_pred CCceeecCCCeEEEEEEEe--------------------------CcccCCCceeEEEEEECCCCCeEEEEEEecCCcee
Confidence 4557889999999999998 6553 67788763 21110
Q ss_pred ----cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC------c-----eEEEEEeec-----eee-e---ec
Q psy7039 183 ----IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG------T-----ATASAHVTG-----TEF-T---DN 236 (516)
Q Consensus 183 ----~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g------~-----~~~~~~~~~-----~~~-~---~~ 236 (516)
...|+.+... ....+|.|.+++.+|+|.|.|.+.+..| . ....+.+.. ... . ..
T Consensus 61 ~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~ 140 (228)
T 3bae_H 61 YNPSLESRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVC 140 (228)
T ss_dssp ECTTTGGGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC--
T ss_pred eCcccCCcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccc
Confidence 1245655432 3457999999999999999999998654 1 112222221 011 1 12
Q ss_pred cccCCceEEEEEEEEccCCC-CCc-eecccccccc---e-EEEEEec----ceeeEEEccCCCCCceEEEEEEEecCCCc
Q psy7039 237 NVHEGKAYEYRVSAVNAAGT-EKP-KISLDALIGK---R-IKEFVTS----TTASLNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~---~-~~~~~~~----~~~~l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+.+|..+.+.|.+ .|. |.| .+.|.+.... . ....... ....|.|.....++ |.|+|.|.|..+..
T Consensus 141 ~~~~g~~~~l~C~~---~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 141 GDTTGSSVTLGCLV---KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp ---CCSEEEEEEEE---EEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred cccCCCCEEEEEEE---ccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 34578999999998 454 767 9999763221 1 1100011 23468888887755 99999999988765
Q ss_pred c
Q psy7039 307 M 307 (516)
Q Consensus 307 ~ 307 (516)
.
T Consensus 217 ~ 217 (228)
T 3bae_H 217 K 217 (228)
T ss_dssp E
T ss_pred C
Confidence 4
No 444
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.20 E-value=3.3e-10 Score=107.68 Aligned_cols=172 Identities=15% Similarity=0.155 Sum_probs=109.3
Q ss_pred EccCCCCCceEEEEEEEecCCCcceeEEEEEecC---CCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccc
Q psy7039 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK---PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360 (516)
Q Consensus 284 i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~---p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~ 360 (516)
+..+.+...|.+++.|.|..|....+ .+.+... +..|...+.+.... +++.|+|.+|.. .+.+|.
T Consensus 65 ~~~l~p~t~Y~~~V~A~n~~G~s~~s-~~~~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~----~i~~Y~------ 132 (290)
T 3l5i_A 65 LTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE----SVKKYI------ 132 (290)
T ss_dssp EEEEECSSCEEEEEEEEESSCBCCCE-EEEECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS----CCCEEE------
T ss_pred EEEEcCCceEEEEEEEEcCCCCCCCc-eEEeecccccCCCccceeEEEeCC-CeEEEEEeCCCC----CCCcEE------
Confidence 34456778999999999998876544 3333333 12221224444444 799999998864 565652
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+.|...+........+..........+.+.+|.+ ...|.|++.|.|..|.+..
T Consensus 133 --------------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p-~t~Y~~~V~A~n~~g~g~~ 185 (290)
T 3l5i_A 133 --------------------------LEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE-SKCYLITVTPVYADGPGSP 185 (290)
T ss_dssp --------------------------EEEEEECSSSCCCCEEEEEETTCSEEECCSCCCT-TCEEEEEEEEEETTEECCC
T ss_pred --------------------------EEEEECCCCCCCCcCeEEccCCCcceEEecCcCC-ccEEEEEEEEEeCCccccc
Confidence 2333222111001112222333445788899999 9999999999999987653
Q ss_pred EEEEEEecC---CCCCCCCcccccccCCeEEEEeeCC-CCCCCCCcceEEEEEEecCCCc
Q psy7039 441 SCKVYVVDK---PSPPQGPLDVSDITPESCSLSWKPP-LDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 441 s~~l~v~~~---p~~P~~~l~~~~~~~~~~~l~W~~p-~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
..+.+... |..| ..+.+..++.+++.|+|+++ ..+.++.|.+|.|+|+..+...
T Consensus 186 -~~~~~~t~~~~P~~~-p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~ 243 (290)
T 3l5i_A 186 -ESIKAYLKQAPPSKG-PTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE 243 (290)
T ss_dssp -EEEEEESSCCCCSSC-CCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSCC
T ss_pred -EEEEeEccccCCCCC-CeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCCe
Confidence 33344333 3333 36677778899999999953 2345778999999999876554
No 445
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.19 E-value=6.5e-11 Score=111.45 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=96.4
Q ss_pred cCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCcccccccccc
Q psy7039 78 IEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRAN 157 (516)
Q Consensus 78 ~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~ 157 (516)
+..+...|.|+|.|..|....+. ...+. ..+..+.+.+|+++.|.|.+.
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~------------~~~v~-~~p~~v~v~~G~~v~L~C~~~------------------ 52 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGG------------GMKVI-QTPRYLVKGQGQKAKMRCIPE------------------ 52 (270)
T ss_dssp ------------------------------------CCCE-EECSEEEEETTSCEEEEEECC------------------
T ss_pred hhhhHHHHHHHHhccCCcccccc------------ceeEE-eCCCeEEEcCCCCEEEEEEec------------------
Confidence 46678899999988766432211 12222 445668899999999999987
Q ss_pred CccceeecCcCceeeEEee--------------CCeeeccC---C-ceEEee-cCCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 158 STKGWVKLSEPFLNHGWSI--------------NGQVCQIG---G-RADVQT-TKSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 158 ~~~~~~~~~~p~~~i~W~~--------------~~~~~~~~---~-~~~~~~-~~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+ +.+.+.|++ ++...... . |+.+.. .....+|.|.+++.+|+|.|.|.+.+.
T Consensus 53 --------~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~ 123 (270)
T 3qib_D 53 --------K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLN 123 (270)
T ss_dssp --------T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESC
T ss_pred --------C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecC
Confidence 3 445666765 11111111 1 555543 345679999999999999999999863
Q ss_pred CCc------eEEEEEeec-------eeee-----eccccCCceEEEEEEEEccCC-CCCc-eecccccccceE----EEE
Q psy7039 219 LGT------ATASAHVTG-------TEFT-----DNNVHEGKAYEYRVSAVNAAG-TEKP-KISLDALIGKRI----KEF 274 (516)
Q Consensus 219 ~g~------~~~~~~~~~-------~~~~-----~~~l~~g~~~~~~~~~~~~~g-~p~p-~i~W~~~~~~~~----~~~ 274 (516)
.+. ....+.+.. .... ...+..|..+.+.|.+ .| .|.| .+.|.+. +..+ ...
T Consensus 124 ~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~---~g~~P~~~~v~W~k~-g~~l~~~~~~~ 199 (270)
T 3qib_D 124 WSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLA---TGFYPDHVELSWWVN-GKEVHSGVCTD 199 (270)
T ss_dssp TTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEE---EEEBSSCEEEEEEET-TEEECTTEEEC
T ss_pred CCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEe---cceeCCCeEEEEEEC-CEECCCCcccc
Confidence 211 011122211 1111 1123458999999998 45 5656 7899652 1111 000
Q ss_pred ----------Ee---cceeeEEEccCCCCC-ceEEEEEEEecCCCcc
Q psy7039 275 ----------VT---STTASLNIKNSVRKD-SGIYKIEAKNDYGIDM 307 (516)
Q Consensus 275 ----------~~---~~~~~l~i~~l~~~d-~g~y~c~a~n~~g~~~ 307 (516)
.. .....|.|......| .|.|+|.|.|......
T Consensus 200 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 200 PQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp SSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCTT
T ss_pred cccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCCc
Confidence 00 011346677776666 9999999998765544
No 446
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.19 E-value=9.8e-11 Score=97.80 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=72.0
Q ss_pred CcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCC--------------------
Q psy7039 119 STLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSING-------------------- 178 (516)
Q Consensus 119 ~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~-------------------- 178 (516)
..+..+.+.+|+.+.|.|.+. |.|.|.++|++++
T Consensus 23 ~~p~~~~v~~G~~v~L~C~~~--------------------------G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~ 76 (139)
T 1gxe_A 23 RIPDTIVVVAGNKLRLDVPIS--------------------------GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGD 76 (139)
T ss_dssp CCCCEEEESSSSCCCCEEECC--------------------------SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCC
T ss_pred CCCCCEEEeCCCeEEEEEEEE--------------------------EcCCCeEEEEECCcccccccccccccccccccc
Confidence 346789999999999999999 9999999999988
Q ss_pred --------eee-ccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 179 --------QVC-QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 179 --------~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
..+ ....++.+...+....|.|.+++.+|+|.|+|.+.|..|.....+.+.
T Consensus 77 ~~~~~~~~~~l~~~~~r~~i~~~~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~ 136 (139)
T 1gxe_A 77 SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136 (139)
T ss_dssp SSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEE
T ss_pred cccccccceeecCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEE
Confidence 444 244677777667778999999999999999999999999887666554
No 447
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.19 E-value=2.4e-10 Score=104.19 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=99.3
Q ss_pred ccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee---e------------
Q psy7039 121 LNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV---C------------ 181 (516)
Q Consensus 121 ~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~---~------------ 181 (516)
+..+.+.+|+.+.|.|.+. +.+ .+.+.|++.. .. +
T Consensus 7 p~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~ 60 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAAS--------------------------GFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYY 60 (223)
T ss_dssp ECCCEECTTCCEEEEEEEE--------------------------SSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEE
T ss_pred CCCEEEcCCCcEEEEEEec--------------------------CcccCCceEEEEEECCCCCcEEEEEEecCCCcccc
Confidence 3467899999999999998 332 3456665521 10 0
Q ss_pred c--cCCceEEeec--CCeeEEEeccCCCCCCeeEEEEEEcCCC---c-----eEEEEEeec-----ee-ee---eccccC
Q psy7039 182 Q--IGGRADVQTT--KSETVLDIPFCSRSDTGHYSLTLENNLG---T-----ATASAHVTG-----TE-FT---DNNVHE 240 (516)
Q Consensus 182 ~--~~~~~~~~~~--~~~~~l~i~~~~~~d~g~Y~c~~~~~~g---~-----~~~~~~~~~-----~~-~~---~~~l~~ 240 (516)
. ...|+.+... ....+|.|.+++.+|+|.|.|.+.+..| . ....+.+.. .. +. ...+.+
T Consensus 61 ~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~ 140 (223)
T 1dee_B 61 ADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNP 140 (223)
T ss_dssp CTTTBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCS
T ss_pred CcccCCeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCC
Confidence 0 1246665543 3467999999999999999999998643 1 111222221 01 11 123457
Q ss_pred CceEEEEEEEEccCCC-CCc-eecccccccceEE-EE-----Eec----ceeeEEEccCCC--CCceEEEEEEEecCCCc
Q psy7039 241 GKAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK-EF-----VTS----TTASLNIKNSVR--KDSGIYKIEAKNDYGID 306 (516)
Q Consensus 241 g~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~-~~-----~~~----~~~~l~i~~l~~--~d~g~y~c~a~n~~g~~ 306 (516)
|..+.+.|.+ .|. |.| .+.|.+..+..+. .. ... ....|.|..... +|.|.|+|.|.|..+..
T Consensus 141 g~~v~L~C~~---~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 141 SSTVAVGCLA---QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp SSEEEEEEEE---EEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCcEEEEEEE---EEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 8999999998 454 666 8999762222110 00 001 134577777765 78899999999988765
Q ss_pred ce
Q psy7039 307 MA 308 (516)
Q Consensus 307 ~~ 308 (516)
..
T Consensus 218 ~~ 219 (223)
T 1dee_B 218 EK 219 (223)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 448
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.19 E-value=7.7e-11 Score=93.99 Aligned_cols=89 Identities=18% Similarity=0.362 Sum_probs=65.6
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.... ....|.|.++.. .|.|.|+|.|.|..|....+
T Consensus 17 ~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~-~D~G~Y~C~a~n~~g~~~~~ 93 (108)
T 3kvq_A 17 LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRK-EDEGLYTCQACSVLGCAKVE 93 (108)
T ss_dssp CCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCG-GGCEEEEEEEC----CEEEE
T ss_pred CCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCc-ccCEEEEEEEEeCCCceEEE
Confidence 456788999999999999999999999999998887666655443 335699999999 99999999999999999999
Q ss_pred EEEEEecCCCCC
Q psy7039 442 CKVYVVDKPSPP 453 (516)
Q Consensus 442 ~~l~v~~~p~~P 453 (516)
+.|.|..+|..|
T Consensus 94 ~~l~V~~~~~~~ 105 (108)
T 3kvq_A 94 AFFIIEGAQEKT 105 (108)
T ss_dssp EEEEEEC-----
T ss_pred EEEEEeCCCccc
Confidence 999999877655
No 449
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=7.1e-11 Score=93.90 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
...++++|.+|++.+++++++.|+|.+|. +.|.+|+|.|...++.+.....+.+..++++|.+|++++.|.++|.|
T Consensus 4 ~t~p~~pP~~l~~~~vt~tsi~vsW~pp~----~~i~~Y~I~y~~~~~~~~~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A 79 (108)
T 2ee3_A 4 GSSGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTC 79 (108)
T ss_dssp CCCCCCCSSCEEEESCCSSCEEEEESCCS----SCCSEEEEEEEETTTCCBCCEEEETTCCEEEECSCCSSCEEEEEEEE
T ss_pred cccCCCCCceEEEEEccCCeEEEEeeCCC----CCccEEEEEEEeCCCCceeEEEcCCCcCEEEcCCCCCCCEEEEEEEE
Confidence 34567899999999999999999999873 46999999999876633333455667899999999999999999999
Q ss_pred ecCCCCCCCCC
Q psy7039 90 VNAAGPGEASK 100 (516)
Q Consensus 90 ~n~~g~~~~s~ 100 (516)
.|..|.+.++.
T Consensus 80 ~~~~g~s~p~~ 90 (108)
T 2ee3_A 80 LYPGGGSSTLT 90 (108)
T ss_dssp ECTTSCEEEEE
T ss_pred EeCCCcCCCcc
Confidence 99998877543
No 450
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.19 E-value=1.2e-10 Score=107.06 Aligned_cols=166 Identities=10% Similarity=0.085 Sum_probs=98.2
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC--ceeeEEeeCC--ee--------------e
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP--FLNHGWSING--QV--------------C 181 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~i~W~~~~--~~--------------~ 181 (516)
.+..+.+.+|+.+.|.|.+. +.+ ...+.|++.. .. .
T Consensus 6 qp~~~~v~~G~~v~L~C~~~--------------------------~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~ 59 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVY--------------------------GGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNY 59 (232)
T ss_dssp EECCCEECTTSCEEEEEEEE--------------------------SSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEE
T ss_pred CCCCEEEeCCCcEEEEEEEc--------------------------cccCCCceEEEEEeCCCCCeEEEEEEecCCceee
Confidence 34557889999999999998 332 3456665521 10 0
Q ss_pred c--cCCceEEee--cCCeeEEEeccCCCCCCeeEEEEEEcCCC--c------eEEEEEeec-----eeee----eccccC
Q psy7039 182 Q--IGGRADVQT--TKSETVLDIPFCSRSDTGHYSLTLENNLG--T------ATASAHVTG-----TEFT----DNNVHE 240 (516)
Q Consensus 182 ~--~~~~~~~~~--~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g--~------~~~~~~~~~-----~~~~----~~~l~~ 240 (516)
. ...|+.+.. .+...+|.|.+++.+|+|.|.|.+.+..+ . ....+.+.. .... ...+..
T Consensus 60 ~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~ 139 (232)
T 1dn0_B 60 NPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPS 139 (232)
T ss_dssp CTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-----
T ss_pred CCccCCeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCC
Confidence 0 135666654 23467999999999999999999983111 1 111222321 1111 112346
Q ss_pred C-ceEEEEEEEEccCCC-CCc-eecccccccceEE-EE-----Eec----ceeeEEEccCCC--CCceEEEEEEEecCCC
Q psy7039 241 G-KAYEYRVSAVNAAGT-EKP-KISLDALIGKRIK-EF-----VTS----TTASLNIKNSVR--KDSGIYKIEAKNDYGI 305 (516)
Q Consensus 241 g-~~~~~~~~~~~~~g~-p~p-~i~W~~~~~~~~~-~~-----~~~----~~~~l~i~~l~~--~d~g~y~c~a~n~~g~ 305 (516)
| ....+.|.+ .|. |.| .+.|.+..+.... .. ... ....|.|..... +|.|.|+|.|.|..+.
T Consensus 140 g~~~v~L~C~~---~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~ 216 (232)
T 1dn0_B 140 DTSSVAVGCLA---QDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN 216 (232)
T ss_dssp -CCSEEEEEEE---EEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred CCCcEEEEEEE---EEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence 7 899999998 443 666 8999762222211 00 011 134678888776 7899999999999887
Q ss_pred cceeEEEEE
Q psy7039 306 DMADIEVVV 314 (516)
Q Consensus 306 ~~~~~~l~v 314 (516)
......+.+
T Consensus 217 ~~~~~~i~~ 225 (232)
T 1dn0_B 217 KEKNVPLPV 225 (232)
T ss_dssp EEEEEECCC
T ss_pred cceeEecCC
Confidence 655544443
No 451
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.19 E-value=9.5e-11 Score=92.68 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=68.5
Q ss_pred EcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEE--cC---CeEEEEEcCceecCCceEEEEEEEcCCCceeEEE
Q psy7039 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET--SE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASC 442 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~--~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~ 442 (516)
..++.+.|.|.+.|.|.|.+.|++++..+..+.+..... .. ....|.|.++.. .|+|.|+|.|.|..|..+.++
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTH-MNNGDYTLIAKNEYGKDEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCG-GGCEEEEEEEECSSCEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCc-ccCEEEEEEEEeCCCcEeEEE
Confidence 357788999999999999999999999887665532221 11 234599999999 999999999999999999999
Q ss_pred EEEEecCCC
Q psy7039 443 KVYVVDKPS 451 (516)
Q Consensus 443 ~l~v~~~p~ 451 (516)
.|.|..+|.
T Consensus 93 ~l~V~~~P~ 101 (103)
T 1wwb_X 93 SAHFMGWPG 101 (103)
T ss_dssp EECCSCCCC
T ss_pred EEEECCCCC
Confidence 999987665
No 452
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.19 E-value=7.7e-11 Score=92.54 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=73.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEE-ee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADV-QT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~ 191 (516)
+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....+..+ ..
T Consensus 5 ~P~~~-~~p~~~~~~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~g~~~~~~~~~~~~~~ 57 (100)
T 2kdg_A 5 PPRFI-QVPENMSIDEGRFCRMDFKVS--------------------------GLPAPDVSWYLNGRTVQSDDLHKMIVS 57 (100)
T ss_dssp EEECC-CCCCCEEEETTCCEEEEEECE--------------------------EESCCEEEEEETTEEECCCSSSCEEEE
T ss_pred CCeEE-eCCCCEEecCCCEEEEEEEEE--------------------------eeCCCEEEEEECCEECcCCCcEEEEEc
Confidence 55555 556778899999999999999 899999999999998877654333 33
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEee
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~ 229 (516)
.+....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 58 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 95 (100)
T 2kdg_A 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95 (100)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEE
Confidence 45557999999999999999999999998876555443
No 453
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.19 E-value=8.3e-11 Score=92.16 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=72.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCC-ceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGG-RADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~-~~~~~~ 191 (516)
+|.+. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++....
T Consensus 5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~~~~~~~~~~~~~~~~ 57 (99)
T 1u2h_A 5 PPTFK-VSLMDQSVREGQDVIMSIRVQ--------------------------GEPKPVVSWLRNRQPVRPDQRRFAEEA 57 (99)
T ss_dssp EEEEE-ECCCCEEEETTCCEEEEEEEE--------------------------EESCCEEEEEETTEECCCBTTEEEEEC
T ss_pred CCEEE-EcCCceEecCCCEEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCEEEEEC
Confidence 45555 456678899999999999999 89999999999999887653 344444
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
.+...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 58 ~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l 94 (99)
T 1u2h_A 58 EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94 (99)
T ss_dssp GGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEE
Confidence 5556789999999999999999999998887665543
No 454
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.19 E-value=1.3e-10 Score=90.34 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=71.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.+. ..+..+.+.+|+.+.|.|.+. +.| +.+.|++++..+....++.+.
T Consensus 8 ~pp~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p-p~i~W~k~g~~~~~~~~~~~~- 58 (95)
T 2ckn_A 8 QPWGVP-VEVESLLVHPGDLLQLRCRLR--------------------------DDV-QSINWLRDGVQLVESNRTRIT- 58 (95)
T ss_dssp CSCCBT-TBBCCEEECTTSCEEEECCEE--------------------------SSC-CEEEEEBTTBCCCCCSSEEEC-
T ss_pred CCCEEE-cCcceEEEcCCCeEEEEEECC--------------------------CCC-CceEEEECCEecCCCCCEEEe-
Confidence 466666 667889999999999999999 887 799999999988877776553
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
...|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 59 ---~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 92 (95)
T 2ckn_A 59 ---GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92 (95)
T ss_dssp ---SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred ---CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence 4589999999999999999999998887655543
No 455
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.6e-10 Score=91.91 Aligned_cols=92 Identities=22% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCCCC-CCCCcceEEEee--eCCeeEEEecCCCCCCCCceeceEEEEEeCCC----CeEEeEEeecCCcEEEeCCCcCCC
Q psy7039 9 NPFDE-PGKPTDLEATDW--DKDHVDLQWTPPISDGGSPITGYVVEMKDKTG----NWEKAVVVPAGETSCTVPGLIEGE 81 (516)
Q Consensus 9 ~~~~~-p~~p~~l~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~~~ 81 (516)
++++. |++|.+|++..+ ++++|.|+|.+|. +.++.|.+|.|+|+..+. .|... ......++++|.+|++++
T Consensus 3 T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p~-~~~g~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t 80 (114)
T 2ede_A 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL-EANGKITAYILFYTLDKNIPIDDWIME-TISGDRLTHQIMDLNLDT 80 (114)
T ss_dssp CCCCCCCSCCEEEEEEECSSCSSCEEEEEECCS-SCSSCCSEEEEEEESCSSSCTTTSEEE-EEETTCCEEEECSCCSSC
T ss_pred CCCCCCCCCCcceEEEEccCCCCEEEEEECCCC-CCCCceeEEEEEEEeCCCCCccceEEE-EECCCceEEEEcCCCCCC
Confidence 44544 489999999988 7789999999986 444579999999987433 45433 345678999999999999
Q ss_pred eEEEEEEEecCCCCCCCCCCC
Q psy7039 82 TYQFQVRAVNAAGPGEASKPT 102 (516)
Q Consensus 82 ~y~~~~~a~n~~g~~~~s~~~ 102 (516)
.|.|+|+|.|..|.+.++...
T Consensus 81 ~Y~~~V~A~n~~G~g~~S~~~ 101 (114)
T 2ede_A 81 MYYFRIQARNSKGVGPLSDPI 101 (114)
T ss_dssp EEEEEEEEECSSCBCCCCCCE
T ss_pred EEEEEEEEEeCCcCcCCcccE
Confidence 999999999999998876543
No 456
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.18 E-value=3.5e-11 Score=95.76 Aligned_cols=86 Identities=26% Similarity=0.464 Sum_probs=77.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 20 ~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 98 (106)
T 1nct_A 20 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA-SDEGNYSVVVENSEGKQEA 98 (106)
T ss_dssp CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCS-SCCSEEEECCBCSSCBCCE
T ss_pred CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCc-hhCEEEEEEEEeCCCeEEE
Confidence 456678999999999999999999999999999988877888887777778999999999 9999999999999999888
Q ss_pred EEEEEEe
Q psy7039 441 SCKVYVV 447 (516)
Q Consensus 441 s~~l~v~ 447 (516)
++.|.|.
T Consensus 99 ~~~l~V~ 105 (106)
T 1nct_A 99 EFTLTIQ 105 (106)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 8888874
No 457
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.18 E-value=1.9e-10 Score=92.58 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCcee----ceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT----GYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~----~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
...+|++|.+|++..+++++|.|+|.+|...+ ..+. +|.|+|+.... .+. ........++++|.+|++++.|.
T Consensus 5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~-~~~~~~~~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~i~gL~P~T~Y~ 82 (113)
T 1x5j_A 5 SSGPMMPPVGVQASILSHDTIRITWADNSLPK-HQKITDSRYYTVRWKTNIPANTK-YKNANATTLSYLVTGLKPNTLYE 82 (113)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEECTTSCS-SSCCCSSCEEEEEECBSSSSSCC-CEECCBCSSEEEEESCCTTCEEC
T ss_pred cCCCCCCCcceEEEEecCCEEEEEecCCCCcc-ccccCcCceEEEEEEECCCCCeE-EEEEecCcCEEEeCCCCCCcEEE
Confidence 45789999999999999999999999985333 3344 99999987322 221 12233468899999999999999
Q ss_pred EEEEEecCCCCCCCCCCCcc
Q psy7039 85 FQVRAVNAAGPGEASKPTAP 104 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~~ 104 (516)
|+|+|.|..|.+.++.....
T Consensus 83 f~V~A~~~~G~g~~S~~v~~ 102 (113)
T 1x5j_A 83 FSVMVTKGRRSSTWSMTAHG 102 (113)
T ss_dssp CEEEEECSSCBCCCCCCCCE
T ss_pred EEEEEecCCccCCCcccEEe
Confidence 99999999998887655443
No 458
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.17 E-value=7.1e-10 Score=101.76 Aligned_cols=176 Identities=12% Similarity=0.081 Sum_probs=102.1
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .+. ..+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 10 GLLKPSETLSLTCAV---YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp CEECTTSCEEEEEEE---ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred EEEeCCCcEEEEEEE---ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 456789999999987 333 25778885421 112222221 235589999999
Q ss_pred CCCceEEEEEEEecC--CC----cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccc
Q psy7039 289 RKDSGIYKIEAKNDY--GI----DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~--g~----~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~ 362 (516)
.+|+|.|.|.+.+.. +. ......|.|...+.. .|... + ..
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~--~P~v~---------~-----------------------~~ 132 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSAS--APTLF---------P-----------------------LV 132 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCB--CCEEE---------E-----------------------EE
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCC--CCceE---------E-----------------------ec
Confidence 999999999998422 11 112346777652211 11000 0 00
Q ss_pred ccEEEEcC-CeEEEEEEEeee-cCC-ceEEEE-CCeecCCCCce-EEEEcCC---eEEEEEcCceec-CCceEEEEEEEc
Q psy7039 363 RDMTVLAG-EEFTITVPFSGR-PKP-TPIWTV-NGDEVSPDGRI-KFETSEN---QTIYRNKSAKRA-TDSGSYTIQLVN 433 (516)
Q Consensus 363 ~~~~v~~g-~~~~l~C~~~g~-p~~-~i~W~~-~~~~l~~~~~~-~~~~~~~---~~~l~i~~~~~~-~~~g~y~c~a~n 433 (516)
....+..| +.+.|.|.+.+. |.+ .+.|++ +|..+.....+ .....+. .+.|.|...... +|.|.|+|.|.|
T Consensus 133 p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n 212 (232)
T 1dn0_B 133 SCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQH 212 (232)
T ss_dssp CC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEEC
T ss_pred cccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEe
Confidence 01123467 899999999986 766 999999 88766430000 0001111 245788766420 258999999999
Q ss_pred CCCceeEEEEEEEec
Q psy7039 434 TVGSDSASCKVYVVD 448 (516)
Q Consensus 434 ~~G~~s~s~~l~v~~ 448 (516)
..|.......+.+..
T Consensus 213 ~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 213 PNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTCCEEEEEECCC--
T ss_pred CCCCcceeEecCCCC
Confidence 999877666665543
No 459
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.17 E-value=1.3e-10 Score=106.02 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=95.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEec-cCCCCCccccCcccceEEecCCeEEEEEeeeecccccc
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK-PKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTK 146 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~-~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~ 146 (516)
....|.|.+++..|.|.|+|.|.|..|... ....+.+. ....+|.+....+....+.+|+.+.|.|.+.
T Consensus 74 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~---~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~------- 143 (231)
T 3ojm_B 74 QHWSLIMESVVPSDKGNYTCVVENEYGSIN---HTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY------- 143 (231)
T ss_dssp GGTEEEECSCCGGGCEEEEEEEEETTEEEE---EEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEE-------
T ss_pred CcceEEEecCCcccCEEEEEEEecccCccc---ccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEe-------
Confidence 456899999999999999999998776432 12222222 2223444443456778899999999999999
Q ss_pred CccccccccccCccceeecCcCceeeEEee----CCeeeccCCceEE--ee-----cCCeeEEEeccCCCCCCeeEEEEE
Q psy7039 147 SPLRALGVRANSTKGWVKLSEPFLNHGWSI----NGQVCQIGGRADV--QT-----TKSETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~----~~~~~~~~~~~~~--~~-----~~~~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+.|.+.+.|++ ++..+........ .. ......|.|.+++.+|+|.|+|.+
T Consensus 144 -------------------~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 204 (231)
T 3ojm_B 144 -------------------SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204 (231)
T ss_dssp -------------------CSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEE
T ss_pred -------------------cCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEE
Confidence 89999999999 7776654332211 11 123457999999999999999999
Q ss_pred EcCCCceEEEEEee
Q psy7039 216 ENNLGTATASAHVT 229 (516)
Q Consensus 216 ~~~~g~~~~~~~~~ 229 (516)
.|..|.......+.
T Consensus 205 ~n~~g~~~~~~~l~ 218 (231)
T 3ojm_B 205 SNYIGQANQSAWLT 218 (231)
T ss_dssp EETTEEEEEEEEEE
T ss_pred EeccceEeeEEEEE
Confidence 99988876555443
No 460
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.17 E-value=7.1e-11 Score=106.43 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=86.2
Q ss_pred EEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEee-eeccccccCccc
Q psy7039 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKE-FRELSYTKSPLR 150 (516)
Q Consensus 72 ~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~~~~~~ 150 (516)
+.|.+++..|.|.|+|.|.|..|........ +.+.. .+|.+. ..+....+.+|+.+.|.|.+ .
T Consensus 74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~--l~V~~--~~~~~~-~~~~~~~~~~g~~~~l~C~~~~----------- 137 (212)
T 2v9r_A 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDAS--LEVAI--LRDDFR-QNPSDVMVAVGEPAVMECQPPR----------- 137 (212)
T ss_dssp CCCCSSCCCSCEEEEEEEEETTEEEECCCEE--EEECE--ECSSCS-BCCCCEEEETTSCEEEECBCCC-----------
T ss_pred EEecCCCcccCeEEEEEEECCCCceeecceE--EEEEe--ccccce-eCCCceEecCCCcEEEEEecCC-----------
Confidence 4456678999999999999977653222222 22221 123333 44566789999999999998 7
Q ss_pred cccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceE
Q psy7039 151 ALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223 (516)
Q Consensus 151 ~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~ 223 (516)
+.|.+.+.|++++..+....+..... ...|.|.+++.+|+|.|+|.+.|..|...
T Consensus 138 ---------------~~p~~~v~W~~~~~~l~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~ 192 (212)
T 2v9r_A 138 ---------------GHPEPTISWKKDGSPLDDKDERITIR---GGKLMITYTRKSDAGKYVCVGTNMVGERE 192 (212)
T ss_dssp ---------------EESCCEEEEEETTEEECTTSTTEEEE---TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ---------------CCCCCEEEEEECCccCCCCcceEEcc---CCeEEEeeCCHhhCeeEEEEEecccCcee
Confidence 88999999999999887543322221 24899999999999999999999887654
No 461
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}
Probab=99.17 E-value=6.9e-09 Score=104.48 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=130.7
Q ss_pred eeccccCCceEEEEEEEEccCCCCCceecccccccceEEEEEecceeeEEEccCCCC--CceEEEEEEEecCCCcceeEE
Q psy7039 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRK--DSGIYKIEAKNDYGIDMADIE 311 (516)
Q Consensus 234 ~~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~l~i~~l~~~--d~g~y~c~a~n~~g~~~~~~~ 311 (516)
....+..|..+++.|..... .....-................++|.|+... ...+|.|... .......
T Consensus 206 ~~~vv~~GS~vt~~Ci~~~~------~~~~~l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~ 275 (483)
T 3e0g_A 206 QDKVILVGSDITFCCVSQEK------VLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTV 275 (483)
T ss_dssp CSEEEETTCCEEEEECCSSC------EEEEESSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEE
T ss_pred cCCEEeCCCCEEEEEEeCcc------ccceecCcccceeEEecCCEEEEEEeCCCCccCccceEEEecC----CcccceE
Confidence 34456789999999976211 1111001111111234556678888888653 3457999852 2344566
Q ss_pred EEEecCCCCCCCCceeeeccCCeeEEEecCCCCCC--CCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEE
Q psy7039 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDG--GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389 (516)
Q Consensus 312 l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~--~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W 389 (516)
+.+..+|..|.. +.+......++.++|.++.+.+ |...+.|...- ...|.. ..|.....
T Consensus 276 l~vg~PP~~P~n-lsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y---------~~~g~~--~~C~~~~~------- 336 (483)
T 3e0g_A 276 IFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVE---------SFSGKY--VRLKRAEA------- 336 (483)
T ss_dssp EEEECCCCCCEE-EEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEE---------TTTCCE--EEECCCSS-------
T ss_pred EECcCCCCCCCc-cEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEE---------EECCCC--ccccCCcc-------
Confidence 777666665544 6777667789999999987653 33344441000 001111 22321000
Q ss_pred EECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEe--cCCCCCCCCcccccccCCeE
Q psy7039 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV--DKPSPPQGPLDVSDITPESC 467 (516)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~--~~p~~P~~~l~~~~~~~~~~ 467 (516)
. .+......|..+.. ...|.+++.|.|..|.......+.+. .+|.|| .++++..+....+
T Consensus 337 ---------~-------~~~~~~C~~~~l~~-~t~Y~f~V~A~N~lG~~~S~~~~~~~~~VkP~PP-~nl~v~~~~stsl 398 (483)
T 3e0g_A 337 ---------P-------TNESYQLLFQMLPN-QEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTP-TSFKVKDINSTAV 398 (483)
T ss_dssp ---------C-------SCSCEEEEEECCTT-CCCEEEEEEEECSSCEEEEEEEECGGGGBCCCCC-EEEEECCSSSSSC
T ss_pred ---------c-------CCCEEEEEEccCCC-CcEEEEEEEEEeCCCCcccceEEEeccccCCCCC-eeeEEEEecCCeE
Confidence 0 01123466667777 88899999999999987644333222 367777 7888887788999
Q ss_pred EEEeeCCCCCCCCCcceEEEEEEecCCCc
Q psy7039 468 SLSWKPPLDDGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 468 ~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~ 496 (516)
.|+|++|. ..+..+..|.|+|+..+...
T Consensus 399 ~LsW~~P~-~~~~~~L~YeVrYr~~~~~~ 426 (483)
T 3e0g_A 399 KLSWHLPG-NFAKINFLCEIEIKKSNSVQ 426 (483)
T ss_dssp CEEEECCS-CCTTSBCCCEEEEECSSSCC
T ss_pred EEEECCCC-CCCCceEEEEEEEEECCCCC
Confidence 99999986 34455789999999886643
No 462
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.17 E-value=5.4e-11 Score=96.76 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred cccccEEEEcCCeEEEEEEEeee---cCCceEEEECCeec-C--CCCceEEEEc--C----CeEEEEEcCceecCCceEE
Q psy7039 360 LSIRDMTVLAGEEFTITVPFSGR---PKPTPIWTVNGDEV-S--PDGRIKFETS--E----NQTIYRNKSAKRATDSGSY 427 (516)
Q Consensus 360 ~~~~~~~v~~g~~~~l~C~~~g~---p~~~i~W~~~~~~l-~--~~~~~~~~~~--~----~~~~l~i~~~~~~~~~g~y 427 (516)
..+.++.+.+|+.+.|.|.+.|. |.|.|.|+++.... . ...++.+... . ....|.|.++.. .|+|.|
T Consensus 12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~DaG~Y 90 (126)
T 2dav_A 12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD-NFAGNY 90 (126)
T ss_dssp SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT-TSCEEE
T ss_pred EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCc-ccCEEE
Confidence 45677889999999999999875 88999999974211 1 1344444321 1 146899999999 999999
Q ss_pred EEEEEcCCCceeEEEEEEEec-CCCCC
Q psy7039 428 TIQLVNTVGSDSASCKVYVVD-KPSPP 453 (516)
Q Consensus 428 ~c~a~n~~G~~s~s~~l~v~~-~p~~P 453 (516)
+|.|.|..|..+.++.|+|.. ++..|
T Consensus 91 ~Cevsn~~g~~~~~~~L~V~~~~~~~p 117 (126)
T 2dav_A 91 RCEVTYKDKFDSCSFDLEVHESTGTTP 117 (126)
T ss_dssp EEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred EEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence 999999999999999999998 66666
No 463
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.17 E-value=2.5e-10 Score=90.18 Aligned_cols=87 Identities=23% Similarity=0.401 Sum_probs=75.1
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCC--ceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCce
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~ 438 (516)
.+.+..+..|+.+.|.|.+.+ +.+.+.|++++..+..+. ++.+...+....|.|.++.. .|+|.|+|.|.| .
T Consensus 13 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n----~ 86 (103)
T 1x44_A 13 QLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK-ADAAEYSVMTTG----G 86 (103)
T ss_dssp CCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECT-TTCSEEEEEETT----E
T ss_pred cCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCc-ccCEEEEEEECC----C
Confidence 456688999999999999987 778999999999987776 66887777778999999999 999999999987 5
Q ss_pred eEEEEEEEecCCCCC
Q psy7039 439 SASCKVYVVDKPSPP 453 (516)
Q Consensus 439 s~s~~l~v~~~p~~P 453 (516)
+.++.|.|..+|.++
T Consensus 87 ~~~~~l~V~~~p~p~ 101 (103)
T 1x44_A 87 QSSAKLSVDLKSGPS 101 (103)
T ss_dssp EEEEEEEEECCCSCC
T ss_pred cEEEEEEEeCCCCCC
Confidence 777889998877765
No 464
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.17 E-value=2.5e-10 Score=88.32 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=70.4
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+.+..+.+|+.+.|.|.+.+ +++.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. ..
T Consensus 11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~-~D~G~Y~C~a~n~----~~ 84 (93)
T 1waa_A 11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL-GMTGEVSFQAANT----KS 84 (93)
T ss_dssp CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCG-GGCEEEEEEETTE----EE
T ss_pred cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCCh-hhCEEEEEEECCC----cE
Confidence 456788999999999999976 45789999999999888888888777778999999999 9999999999874 45
Q ss_pred EEEEEEec
Q psy7039 441 SCKVYVVD 448 (516)
Q Consensus 441 s~~l~v~~ 448 (516)
++.|.|..
T Consensus 85 sa~L~V~~ 92 (93)
T 1waa_A 85 AANLKVKE 92 (93)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 67777764
No 465
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2e-10 Score=92.00 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=72.9
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+.
T Consensus 7 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------g~p~p~v~W~k~g~~~~~~~~~~~~~ 59 (110)
T 2dm2_A 7 GAPFFE-MKLKHYKIFEGMPVTFTCRVA--------------------------GNPKPKIYWFKDGKQISPKSDHYTIQ 59 (110)
T ss_dssp CCCCBS-SCCCCEEEETTCCEEEEEEBC--------------------------CSSCCEEEEECSSCBCCTTCSSEEEE
T ss_pred CCCEEE-ecCcCeEEeCCCeEEEEEEEE--------------------------ecCCCEEEEEECCEECCCCCCeEEEE
Confidence 466666 566778999999999999999 999999999999988875 4566665
Q ss_pred ec-CCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEE
Q psy7039 191 TT-KSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226 (516)
Q Consensus 191 ~~-~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~ 226 (516)
.. .....|.|.+++.+|+|.|+|.+.|..|......
T Consensus 60 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~ 96 (110)
T 2dm2_A 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTG 96 (110)
T ss_dssp ECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECC
T ss_pred ECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEE
Confidence 44 3446899999999999999999999988765443
No 466
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.17 E-value=1.3e-10 Score=102.98 Aligned_cols=118 Identities=11% Similarity=0.054 Sum_probs=85.9
Q ss_pred CCcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccC
Q psy7039 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147 (516)
Q Consensus 68 ~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~ 147 (516)
....|.|.+++..|.|.|+|.|.|..+.+..+. ...+.+.....+|.+. ..+ ...+.+|+.+.|.|.+.
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~-~~~l~V~~~~~~p~i~-~~p-~~~v~~G~~v~L~C~~~-------- 123 (188)
T 1oll_A 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSN-LLDLVVTEMYDTPTLS-VHP-GPEVISGEKVTFYCRLD-------- 123 (188)
T ss_dssp CEEEEEESSCCGGGCEEEEEEEEETTEECCCCC-CEEEEEESCSCCCEEE-EES-CSEEETTCEEEEEEECS--------
T ss_pred ceeEEEeCcCCcccCeEEEEEecCCCCCCCCCC-ceEEEecccCCCCeEE-ECC-CCccccCCEEEEEEEcC--------
Confidence 456899999999999999999988655443332 2233333333456665 223 35688999999999987
Q ss_pred ccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
+. .+.+.|++++..+.. ..........|.|.+++.+|+|.|+|.+.|..
T Consensus 124 ------------------~~-~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 124 ------------------TA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp ------------------SS-CSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred ------------------CC-CCEEEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 53 468999998876543 12234567899999999999999999998753
No 467
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.16 E-value=7.7e-10 Score=101.48 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=79.0
Q ss_pred ceeeEEEccCCCCCceEEEEEEEecC--------CCcceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCc
Q psy7039 278 TTASLNIKNSVRKDSGIYKIEAKNDY--------GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTP 349 (516)
Q Consensus 278 ~~~~l~i~~l~~~d~g~y~c~a~n~~--------g~~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~ 349 (516)
....|.|.+++.+|+|.|.|.+.+.. ........+.|...+.. .|.. .
T Consensus 81 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~v-~--------------------- 136 (232)
T 3qhz_H 81 SQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTK--GPSV-F--------------------- 136 (232)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCB--CCEE-E---------------------
T ss_pred CEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCC--CCEE-E---------------------
Confidence 45689999999999999999998763 11222345555532211 1100 0
Q ss_pred eeeccccccccccccEEEEcCCeEEEEEEEeeecCC--ceEEEECCeecC---------CCCceEEEEcCCeEEEEEcCc
Q psy7039 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVS---------PDGRIKFETSENQTIYRNKSA 418 (516)
Q Consensus 350 i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~---------~~~~~~~~~~~~~~~l~i~~~ 418 (516)
.......+..|+.+.|.|.+.+.+++ .+.|++++..+. .+..|... +.|.|...
T Consensus 137 ----------~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~ 201 (232)
T 3qhz_H 137 ----------PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS-----SVVTVPSS 201 (232)
T ss_dssp ----------EECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEE-----EEEEEEGG
T ss_pred ----------EecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEE-----EEEEEchh
Confidence 00112234569999999999986553 577999886331 12222222 46888888
Q ss_pred eecCCceEEEEEEEcCCCceeEEEEEEE
Q psy7039 419 KRATDSGSYTIQLVNTVGSDSASCKVYV 446 (516)
Q Consensus 419 ~~~~~~g~y~c~a~n~~G~~s~s~~l~v 446 (516)
.. .+ |.|+|.|.|..+.......+.+
T Consensus 202 ~~-~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 202 SL-GT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp GG-GT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred hc-CC-CEEEEEEEeCCCCccEEEEeCC
Confidence 87 78 9999999999887766655543
No 468
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.16 E-value=1.3e-10 Score=105.40 Aligned_cols=173 Identities=14% Similarity=0.017 Sum_probs=97.7
Q ss_pred eccccCCceEEEEEEEEccCCCCCceecccccc-----------------------cceEEEEEecceeeEEEccCCCCC
Q psy7039 235 DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----------------------GKRIKEFVTSTTASLNIKNSVRKD 291 (516)
Q Consensus 235 ~~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~-----------------------~~~~~~~~~~~~~~l~i~~l~~~d 291 (516)
...+.+|+.+.|.|.+.. ...+.+.+.|.+.. ..++.+........|.|.+++.+|
T Consensus 8 ~~~v~~G~~v~L~C~~~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 86 (215)
T 3nl4_H 8 GRLVTPGTPLTLACTVSG-FSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTTED 86 (215)
T ss_dssp CCEECTTCCEEEEEEEES-SCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCGGG
T ss_pred CEEEcCCCcEEEEEEecC-cccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCccc
Confidence 345678999999998832 12345778885411 122222224456679999999999
Q ss_pred ceEEEEEEEecCCC----cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEE
Q psy7039 292 SGIYKIEAKNDYGI----DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367 (516)
Q Consensus 292 ~g~y~c~a~n~~g~----~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v 367 (516)
+|.|.|.+.|..+. ......+.|...+.. .|.. . + . .....+
T Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~--~P~i-~--------~--~---------------------~~~~~~ 132 (215)
T 3nl4_H 87 TATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPK--APSV-F--------P--L---------------------APCCGD 132 (215)
T ss_dssp CEEEEEEEECSSSSCEEEECCCEEEEECSSCCB--CCEE-E--------E--E---------------------CCCTTC
T ss_pred CEEEEEEEecCCCccceEEcCCEEEEEeCCCcC--CCEE-E--------E--e---------------------cCCccc
Confidence 99999999987553 233345666532211 1100 0 0 0 011123
Q ss_pred EcCCeEEEEEEEeeecCC--ceEEEECCeecCCCCceEEEEcCCe-EEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 368 LAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 368 ~~g~~~~l~C~~~g~p~~--~i~W~~~~~~l~~~~~~~~~~~~~~-~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
..|+.+.|.|.+.+.+++ .+.|++++..+............+. .......+.. .| |.|+|.|.|..|.......+
T Consensus 133 ~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~-~d-g~ytC~v~~~~~~~~~~~~l 210 (215)
T 3nl4_H 133 TPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTS-SS-QPVTCNVAHPATNTKVDKTV 210 (215)
T ss_dssp CC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC-----CCEEEEEEGGGTEEEEEEC
T ss_pred cCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeEecCceECCCCCEEEEEEEEEec-cC-CEEEEEEEeCCCCcceEEec
Confidence 468999999999987654 5779998864432111111111111 1111134556 67 99999999998876655444
No 469
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-10 Score=90.08 Aligned_cols=77 Identities=19% Similarity=0.252 Sum_probs=68.4
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeec
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~ 192 (516)
+|.|. ..+.++.+.+|+.+.|.|.+. |.+.+.|++++..+....++.+...
T Consensus 7 p~~~~-~~~~~~~v~~G~~v~l~C~v~----------------------------p~p~v~W~k~g~~l~~~~r~~i~~~ 57 (100)
T 2yuz_A 7 GLKIL-TPLTDQTVNLGKEICLKCEIS----------------------------ENIPGKWTKNGLPVQESDRLKVVQK 57 (100)
T ss_dssp CCCCS-BCCCCEEEETTSCCCEEEECS----------------------------SCCCEEEEETTEECCCCSSEEEEEC
T ss_pred CCEEe-ccCCceEEcCCCCEEEEEEeC----------------------------CCCeEEEEECCEECCCCCcEEEEEe
Confidence 55565 677889999999999999874 5678999999999998899998888
Q ss_pred CCeeEEEeccCCCCCCeeEEEEEEcC
Q psy7039 193 KSETVLDIPFCSRSDTGHYSLTLENN 218 (516)
Q Consensus 193 ~~~~~l~i~~~~~~d~g~Y~c~~~~~ 218 (516)
+....|.|.+++.+|+|.|+|.+.|.
T Consensus 58 ~~~~~L~I~~v~~~D~G~Y~C~a~N~ 83 (100)
T 2yuz_A 58 GRIHKLVIANALTEDEGDYVFAPDAY 83 (100)
T ss_dssp SSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred CCEEEEEECCCChhhCEEEEEEEcCC
Confidence 88889999999999999999999987
No 470
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.16 E-value=3.5e-10 Score=102.75 Aligned_cols=170 Identities=13% Similarity=0.048 Sum_probs=111.9
Q ss_pred cccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcC-----ceeeEEeeCCeeec---------c--
Q psy7039 120 TLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEP-----FLNHGWSINGQVCQ---------I-- 183 (516)
Q Consensus 120 ~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~i~W~~~~~~~~---------~-- 183 (516)
++..+.+.+|+.+.|.|.+. +.| ...+.|++++..+. .
T Consensus 7 p~~~v~~~~G~~v~L~C~~~--------------------------~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~ 60 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFP--------------------------VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQ 60 (222)
T ss_dssp SCSEEEEETTSCEEEEEECC--------------------------CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSS
T ss_pred CCccEEEEcCCcEEEEeEec--------------------------CCCCCCCccEEEEEEECCcEEEEEeCCccccccc
Confidence 44567889999999999987 544 34788888653221 0
Q ss_pred ----CCceEEee---cCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEeeceee-------eeccccCCceEEEEEE
Q psy7039 184 ----GGRADVQT---TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF-------TDNNVHEGKAYEYRVS 249 (516)
Q Consensus 184 ----~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~~~~~~-------~~~~l~~g~~~~~~~~ 249 (516)
..|..+.. .....+|.|.+++.+|+|.|+|.+.+ .+.......+.+... ....+..|..+.+.|.
T Consensus 61 ~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~ 139 (222)
T 3sbw_C 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139 (222)
T ss_dssp CGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEE
T ss_pred cccccCceEEccccccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEE
Confidence 12333321 22456999999999999999999998 555444443332211 1124568999999999
Q ss_pred EEccCCCCCceecccccccceE----EE-EEecceeeE---EEccCCCCCceEEEEEEEecCCCcceeEEEEEecCCC
Q psy7039 250 AVNAAGTEKPKISLDALIGKRI----KE-FVTSTTASL---NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319 (516)
Q Consensus 250 ~~~~~g~p~p~i~W~~~~~~~~----~~-~~~~~~~~l---~i~~l~~~d~g~y~c~a~n~~g~~~~~~~l~v~~~p~ 319 (516)
+ .|.|.|.+.|.+..+... .. ......+.+ .+..+...|.|.|+|.|.|..|.....+.|.|...|.
T Consensus 140 ~---~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 140 A---EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp E---EEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred e---cCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 8 678999999976422211 11 111112222 2234567899999999999999998888888876553
No 471
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=93.19 Aligned_cols=88 Identities=33% Similarity=0.522 Sum_probs=69.8
Q ss_pred CCCCCCC-cceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEE
Q psy7039 11 FDEPGKP-TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88 (516)
Q Consensus 11 ~~~p~~p-~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~ 88 (516)
..+|.+| .++.+..+++++|.|+|.+|. +++++|.+|.|+|+..+. .|..+.. ...++++|.+|+++..|.|+|+
T Consensus 7 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~ 83 (110)
T 2db8_A 7 GPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVK 83 (110)
T ss_dssp CCCCCCCBCCCCCCSCSSSEEEECCBCCT-TCCSCCSEEEEEECCSSSSCCEEEEE--ESCSCEEEECCCSSSCCEEEEE
T ss_pred CCCCCCccccceeeccCCCEEEEEECCCC-CCCCCccEEEEEEEeCCCCceEEEEe--CCcCEEEECCCCCCCEEEEEEE
Confidence 3445544 455555568899999999986 444789999999988654 7876543 3678999999999999999999
Q ss_pred EecCCCCCCCCCC
Q psy7039 89 AVNAAGPGEASKP 101 (516)
Q Consensus 89 a~n~~g~~~~s~~ 101 (516)
|.|..|.+.++..
T Consensus 84 A~n~~G~s~~S~~ 96 (110)
T 2db8_A 84 AFNKTGVSPYSKT 96 (110)
T ss_dssp EECSSCBCCCCSC
T ss_pred EEeCCcCCCCCCC
Confidence 9999998887654
No 472
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.15 E-value=1.6e-08 Score=102.45 Aligned_cols=120 Identities=17% Similarity=0.129 Sum_probs=93.2
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s 441 (516)
+.+..+..|++++|.|.+. .+.|.|.+++..+... ...+....|+|.++.. .|.|.|.|.+.+ +.....
T Consensus 210 P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~-sd~g~y~~~C~~--~~~i~~ 278 (488)
T 2q7n_A 210 PQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPV-SENSGTNIIFIT--DDDVYG 278 (488)
T ss_dssp CTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE-----ECSSSCEEEECCSCCC-CCSSCEEEEEEE--SSCEEE
T ss_pred CCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh-----hccceEEEEEEeCCCc-ccCCcEEEEEEc--CCeEEE
Confidence 3445688999999999998 4689999999877533 1345567899999999 888888887763 233447
Q ss_pred EEEEEecCCCCCCCCcccccccCCeEEEEeeCCCCC--CCCCcceEEEEEEecC
Q psy7039 442 CKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDD--GGSPITNYVVEKYESA 493 (516)
Q Consensus 442 ~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~~--~~~~i~~Y~v~~~~~~ 493 (516)
+.+.+..+|.+| .++........+++++|+++.+. +|.++.+|.|+|+..+
T Consensus 279 ~~l~v~~pP~~P-~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g 331 (488)
T 2q7n_A 279 TVVFAGYPPDVP-QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISG 331 (488)
T ss_dssp EEEEEECCCCCC-CSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTC
T ss_pred EEEEeeCCCCCC-cccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECC
Confidence 788888899998 78887777789999999987644 2357899999997653
No 473
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.15 E-value=3e-10 Score=106.32 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=100.7
Q ss_pred cccCCceEEEEEEEEccCCCC--Cceecccccc-c-----------------------ceEEEEEe--cceeeEEEccCC
Q psy7039 237 NVHEGKAYEYRVSAVNAAGTE--KPKISLDALI-G-----------------------KRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 237 ~l~~g~~~~~~~~~~~~~g~p--~p~i~W~~~~-~-----------------------~~~~~~~~--~~~~~l~i~~l~ 288 (516)
.+.+|+.+.|.|.+ .|.+ .+.+.|.+.. + .++.+... .....|.|.+++
T Consensus 17 ~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 93 (261)
T 2xqy_G 17 LVKPGASVKMSCKA---SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLT 93 (261)
T ss_dssp EECTTCCEEEEEEE---ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred EEcCCCCEEEEEEe---CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCC
Confidence 46789999999988 4444 5778885421 1 12222221 245689999999
Q ss_pred CCCceEEEEEEEecCCC---cceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccE
Q psy7039 289 RKDSGIYKIEAKNDYGI---DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~ 365 (516)
.+|+|.|.|.+.|..+. ......|.|...+.. .|.. . + . ....
T Consensus 94 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~--~P~v-~--------~--~---------------------~p~~ 139 (261)
T 2xqy_G 94 SEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTT--APSV-Y--------P--L---------------------APVC 139 (261)
T ss_dssp GGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCB--CCEE-E--------E--E---------------------CCCC
T ss_pred cccCeEEEEEEecCCCcceEECCCEEEEEccCCCC--CCeE-E--------E--e---------------------CCCc
Confidence 99999999999986431 112346666542211 1100 0 0 0 0011
Q ss_pred EEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcC---CeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 366 TVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSE---NQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 366 ~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+..|+.+.|.|.+.+. |.+ .|.|++++..+...........+ ..+.|.|..... ++ |.|+|.|.|......
T Consensus 140 ~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~-~~-g~YtC~v~n~~~~~~ 216 (261)
T 2xqy_G 140 GDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PS-QSITCNVAHPASSTK 216 (261)
T ss_dssp C--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TT-SCCEEEEEEGGGTEE
T ss_pred cccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEecccc-CC-CEEEEEEEECCCCcc
Confidence 24679999999999885 666 99999998754211000011111 124689988887 78 999999999765533
No 474
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.14 E-value=3.7e-10 Score=91.42 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=74.6
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. |.|.+.+.|++++..+.. ..++.+.
T Consensus 14 ~~p~f~-~~p~~~~v~~G~~v~L~C~~~--------------------------g~p~p~v~W~k~~~~~~~~~~~~~~~ 66 (116)
T 2kkq_A 14 RAPMFI-YKPQSKKVLEGDSVKLECQIS--------------------------AIPPPKLFWKRNNEMVQFNTDRISLY 66 (116)
T ss_dssp BCCCBS-SCCCCEEEETTEEEEEEEEBC--------------------------CBSCCEEEEEETTEECCCCBTTEEEE
T ss_pred CCCeEE-eCCCcEEEeCCCcEEEEEEEe--------------------------ccCCCEEEEEECCEECcCCCCeEEEE
Confidence 467776 777889999999999999999 999999999999998874 4666665
Q ss_pred ecC-CeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEEe
Q psy7039 191 TTK-SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228 (516)
Q Consensus 191 ~~~-~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~~ 228 (516)
..+ ...+|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 67 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 105 (116)
T 2kkq_A 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105 (116)
T ss_dssp ECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred eCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence 443 34589999999999999999999998876655443
No 475
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=99.14 E-value=3.4e-10 Score=89.07 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.|++|.+|++..++++++.|+|.+|. + ++.+.+|+|+|...++ .+......+...++++|.+|+|++.|.|+++|.+
T Consensus 4 ~~~~P~~l~v~~~t~~Sv~l~W~~p~-~-~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~ 81 (101)
T 3k2m_C 4 VSSVPTKLEVVAATPTSLLISWDAPM-S-SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWG 81 (101)
T ss_dssp EEBSSCEEEEEEEETTEEEEEECCCC-T-TSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCcceEEeecCCCEEEEEecCCC-C-CCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 47899999999999999999999985 3 3579999999998654 2222334566789999999999999999999999
Q ss_pred CCCC
Q psy7039 92 AAGP 95 (516)
Q Consensus 92 ~~g~ 95 (516)
..|.
T Consensus 82 ~~~~ 85 (101)
T 3k2m_C 82 EDSA 85 (101)
T ss_dssp ECTT
T ss_pred CCcc
Confidence 8877
No 476
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.14 E-value=9.3e-11 Score=102.72 Aligned_cols=112 Identities=5% Similarity=-0.006 Sum_probs=81.2
Q ss_pred CcEEEeCCCcCCCeEEEEEEEecCCCCCCCCCCCcceEeccCCCCCccccCcccceEEecCCeEEEEEeeeeccccccCc
Q psy7039 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148 (516)
Q Consensus 69 ~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~ 148 (516)
+.+|.|.+++..|.|.|+|.|.|..|.... .....+.+......|.+. ..+..+.|.|.+.
T Consensus 60 ~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~-~~~~~l~V~~~~~~p~i~---------~~~~~v~L~C~~~--------- 120 (176)
T 1hng_A 60 NGDLKIKNLTRDDSGTYNVTVYSTNGTRIL-NKALDLRILEMVSKPMIY---------WECSNATLTCEVL--------- 120 (176)
T ss_dssp TSCEEESSCCGGGCEEEEEEEEETTCCEEE-EEEEEEEEECCCCCCEEE---------EETTTTEEEEECS---------
T ss_pred CCcEEEcccccccCEEEEEEEEeCCCCEEE-EEEEEEEEeCCCCCCEEE---------ecCCcEEEEEEec---------
Confidence 446999999999999999999998765311 112223333332334332 2345699999999
Q ss_pred cccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
+.|.+.+.|++++..+....+ +.|.++..+|+|.|+|.+.|..|.......
T Consensus 121 -----------------g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~ 171 (176)
T 1hng_A 121 -----------------EGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEV 171 (176)
T ss_dssp -----------------SCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEEC
T ss_pred -----------------CCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceeccc
Confidence 899999999999988764433 344577899999999999999988766543
No 477
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.13 E-value=5.8e-10 Score=95.26 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=77.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEc-CCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+... .+...|.|.++.. .|.|.|+|.|.|..|....
T Consensus 48 ~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~~ 126 (154)
T 1fhg_A 48 ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCG-DDDAKYTCKAVNSLGEATC 126 (154)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCG-GGCEEEEEEEEETTEEEEE
T ss_pred CCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCCh-hcCEEEEEEEEECCCeEEE
Confidence 3557889999999999999999999999999999887777777653 3457899999999 9999999999999999999
Q ss_pred EEEEEEecCCCC
Q psy7039 441 SCKVYVVDKPSP 452 (516)
Q Consensus 441 s~~l~v~~~p~~ 452 (516)
.+.|.|..+|..
T Consensus 127 ~~~l~V~~~p~~ 138 (154)
T 1fhg_A 127 TAELLVETMGKE 138 (154)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEeCcCcC
Confidence 999999876643
No 478
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=5.2e-10 Score=91.46 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCcee----ceEEEEEeCCC---CeEEeEEeecCCcEEEeCCCcCCCe
Q psy7039 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT----GYVVEMKDKTG---NWEKAVVVPAGETSCTVPGLIEGET 82 (516)
Q Consensus 10 ~~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~----~Y~v~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~ 82 (516)
...+|.+|.+|++..+++++|.|+|.+|...+ ..|. +|+|+|+..+. .|.. .....++++|.+|++++.
T Consensus 15 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~-~~i~~~~~~Y~v~y~~~~~~~~~~~~---~~~~~~~~~v~gL~P~T~ 90 (123)
T 2edd_A 15 LSTPMLPPVGVQAVALTHDAVRVSWADNSVPK-NQKTSEVRLYTVRWRTSFSASAKYKS---EDTTSLSYTATGLKPNTM 90 (123)
T ss_dssp CCCSSCCCEEEEEEEEETTEEEEEEECSSSCS-SCCCSCCCCEEEEEEETTCTTCCCCC---EEESSSEEEEESCCTTCE
T ss_pred cCCCCCCCcceEEEEcCCCeEEEEecCCCCCc-ccccCcCceEEEEEEECCCCCccEEE---EeCCceEEEecCCCCCCE
Confidence 45788999999999999999999999875333 3344 99999988632 3322 223588999999999999
Q ss_pred EEEEEEEecCCCCCCCCCC
Q psy7039 83 YQFQVRAVNAAGPGEASKP 101 (516)
Q Consensus 83 y~~~~~a~n~~g~~~~s~~ 101 (516)
|.|+|+|.|..|.+.++..
T Consensus 91 Y~f~V~A~n~~g~g~~S~~ 109 (123)
T 2edd_A 91 YEFSVMVTKNRRSSTWSMT 109 (123)
T ss_dssp EEEEEEECCSSSCCCCCCC
T ss_pred EEEEEEEeCCCcccCCCCC
Confidence 9999999999998887654
No 479
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=99.13 E-value=2.1e-10 Score=92.30 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=65.8
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCCC-eEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
.+.|++|.+|++.+++++++.|+|.+|. +.|.+|+|.|...++. +..........++++|.+|++++.|.|+++|
T Consensus 1 ~GvP~~P~~L~v~~~t~~Sv~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A 76 (114)
T 3qwq_B 1 MGVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYA 76 (114)
T ss_dssp ----CCCEEEEEEEEETTEEEEEEECCS----CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCCCCCceEEEecCCCEEEEEEcCCc----CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 3689999999999999999999999973 4689999999986653 3333456677899999999999999999999
Q ss_pred ecCCC
Q psy7039 90 VNAAG 94 (516)
Q Consensus 90 ~n~~g 94 (516)
.+..|
T Consensus 77 ~~~~G 81 (114)
T 3qwq_B 77 VTDHK 81 (114)
T ss_dssp EEEEE
T ss_pred EECCc
Confidence 99887
No 480
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-10 Score=91.14 Aligned_cols=83 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++.. .|+|.|+|.|.|..+ .+.|
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~n~~~----~~~l 93 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV-QDSGEFECRTEGVSA----FFGV 93 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCT-TTCEEEEEECSSCCC----CEEE
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCCh-hhCEEEEEEECCceE----EEEE
Confidence 678999999999999999998 9999999998888888888777778999999999 999999999999743 6788
Q ss_pred EEecCCCCC
Q psy7039 445 YVVDKPSPP 453 (516)
Q Consensus 445 ~v~~~p~~P 453 (516)
.|..+|.+|
T Consensus 94 ~V~~~P~pp 102 (104)
T 2e6p_A 94 TVQDPSGPS 102 (104)
T ss_dssp EEECCCCSS
T ss_pred EEcCCCCCc
Confidence 888888776
No 481
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.13 E-value=9.9e-11 Score=122.96 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=110.8
Q ss_pred ccccCCceEEEEEEEEccCCCCCceeccccccc-----------------ceEEEEEecceeeEEEccCCCCCceEEEEE
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIG-----------------KRIKEFVTSTTASLNIKNSVRKDSGIYKIE 298 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~p~p~i~W~~~~~-----------------~~~~~~~~~~~~~l~i~~l~~~d~g~y~c~ 298 (516)
..+..|+.+.+.|.+. .|.|.+.+.|.+... .+.. ....+.|.|.+++.+|+|.|+|.
T Consensus 376 ~~~~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~L~i~~v~~~D~G~Y~C~ 450 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGA--PKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVAR---VLPNGSLFLPAVGIQDEGIFRCQ 450 (581)
T ss_dssp EEEETTSCEEECCTTC--CSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSE---ECTTSCEEESSCCGGGCEEEEEE
T ss_pred cceecCCcEEEeeeec--CCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEE---EcCCceEEEeccccccCeEEEEE
Confidence 4567899999999752 467889999965321 1111 12345899999999999999999
Q ss_pred EEecCCCc-ceeEEEEEecCCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCe-EEEE
Q psy7039 299 AKNDYGID-MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE-FTIT 376 (516)
Q Consensus 299 a~n~~g~~-~~~~~l~v~~~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~-~~l~ 376 (516)
+.|..|.. ...+.|.|...|..|.. ......+..+.. +.|.
T Consensus 451 ~~n~~~~~~~~~~~l~V~~~~~~p~i-------------------------------------~~~~~~~~~~~~~~~l~ 493 (581)
T 3o3u_N 451 AMNRNGKETKSNYRVRVYQIPGKPEI-------------------------------------VDSASELTAGVPNKVGT 493 (581)
T ss_dssp EECTTSCEEEEEEEEEEEBCCCCCEE-------------------------------------ESCCSEECTTSCEEEEE
T ss_pred EEcCCCceeEEEEEEEEEcCCCCCEE-------------------------------------EcCCcccccCCceeEEE
Confidence 99998887 67788888776654321 001112444544 4669
Q ss_pred EEEee-ecCCceEEEECCeecCCC-CceEEEE------cCC----eEEEEEcCceecCCceEEEEEEEcCCCc
Q psy7039 377 VPFSG-RPKPTPIWTVNGDEVSPD-GRIKFET------SEN----QTIYRNKSAKRATDSGSYTIQLVNTVGS 437 (516)
Q Consensus 377 C~~~g-~p~~~i~W~~~~~~l~~~-~~~~~~~------~~~----~~~l~i~~~~~~~~~g~y~c~a~n~~G~ 437 (516)
|.+.+ .|.+.+.|++++..+... ..+.+.. ..+ .+.|.|..+...++.+.|+|.|.|..+.
T Consensus 494 C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 494 CVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred EECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 99988 599999999999988543 2332211 011 2568999888416689999999999754
No 482
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=99.13 E-value=1.9e-09 Score=106.46 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCCCCcceEEEeee-CCeeEEEecCCCC-C-CCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEE
Q psy7039 11 FDEPGKPTDLEATDWD-KDHVDLQWTPPIS-D-GGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQ 86 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~-~~~v~l~W~~p~~-~-~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~ 86 (516)
...|+||.+|++.+.+ .+++.|+|++|.. + .+..+..|+|+|+..+. .|...... ... ....+.....|.|+
T Consensus 29 ~v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~~~~~--~~~--~~~~~~l~~~y~~r 104 (380)
T 3lb6_C 29 EIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITK--NLH--YKDGFDLNKGIEAX 104 (380)
T ss_dssp --CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEEEEES--SSE--EEEECCTTSCEEEE
T ss_pred cccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceEEEec--cEE--EEEeecCCCceEEE
Confidence 3458999999999776 6889999999864 2 22458999999999764 79877654 222 33345558999999
Q ss_pred EEEecC----CCCCCCCCCCcceEec
Q psy7039 87 VRAVNA----AGPGEASKPTAPIVAK 108 (516)
Q Consensus 87 ~~a~n~----~g~~~~s~~~~~~~~~ 108 (516)
|+|.|. .|.+.++..+..++..
T Consensus 105 V~a~~~~~~~~g~g~~S~~s~~~~~~ 130 (380)
T 3lb6_C 105 IHTLLPWQCTNGSEVQSSWAETTYWI 130 (380)
T ss_dssp EEEECCHHHHSSSCCBCCCEEEEECC
T ss_pred EEeecCCcccCCccCccccchhhccc
Confidence 999975 6777776655555543
No 483
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=99.12 E-value=3.1e-10 Score=89.80 Aligned_cols=81 Identities=16% Similarity=0.365 Sum_probs=68.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCC--CCeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEe
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT--GNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAV 90 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~ 90 (516)
.|++|.+|++..++.+++.|+|.+|. +.|.+|.|.|...+ +.|.. .......++++|.+|++++.|.|+|.|.
T Consensus 2 ~p~~P~~l~v~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~-~~v~~~~~~~~l~~L~p~t~Y~~~V~A~ 76 (104)
T 2rb8_A 2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTT-IDLTEDENQYSIGNLKPDTEYEVSLISR 76 (104)
T ss_dssp CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEE-EEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred CCCCCCccEEEEecCCeEEEEEcCCC----CccceEEEEEEECcCCCceEE-EEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 58999999999999999999999974 56899999998754 24443 3456778999999999999999999999
Q ss_pred cCCCCCCC
Q psy7039 91 NAAGPGEA 98 (516)
Q Consensus 91 n~~g~~~~ 98 (516)
|..|.+.+
T Consensus 77 ~~~g~s~p 84 (104)
T 2rb8_A 77 RGDMSSNP 84 (104)
T ss_dssp ETTEECCC
T ss_pred eCCccCCC
Confidence 98887754
No 484
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=93.99 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEE
Q psy7039 11 FDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89 (516)
Q Consensus 11 ~~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a 89 (516)
..+|++|.+|++..+++++|.|+|.+|. ..|.+|+|.|...++ .+..........++++|.+|++++.|.|+|.|
T Consensus 26 ~tp~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A 101 (121)
T 2ocf_D 26 GSVSDVPTKLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYA 101 (121)
T ss_dssp ---CCSCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEE
T ss_pred cCCCCCCCccEEEecCCCEEEEEEcCCC----CCCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 4567999999999999999999999974 248999999998665 33333345567899999999999999999999
Q ss_pred ecCCCCCCCCC
Q psy7039 90 VNAAGPGEASK 100 (516)
Q Consensus 90 ~n~~g~~~~s~ 100 (516)
.|..|.+.++.
T Consensus 102 ~~~~G~g~~Ss 112 (121)
T 2ocf_D 102 VTGLRLMLAGS 112 (121)
T ss_dssp ECCHHHHHHSC
T ss_pred EeCCCccCCCC
Confidence 99988766543
No 485
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2e-10 Score=90.76 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=76.2
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
.+....+..|+.+.|.|.+.+ +.+.+.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|.| ...
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n----~~~ 87 (103)
T 2edf_A 14 PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL-KDAGEYTCEVEA----SKS 87 (103)
T ss_dssp CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCT-TTCSEEEEECSS----CEE
T ss_pred cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCc-ccCEEEEEEEcc----CCc
Confidence 345678899999999999997 78899999999998878888888777788999999999 999999999999 467
Q ss_pred EEEEEEecCCCCC
Q psy7039 441 SCKVYVVDKPSPP 453 (516)
Q Consensus 441 s~~l~v~~~p~~P 453 (516)
++.|.|..+|.+|
T Consensus 88 ~~~l~V~~~p~~~ 100 (103)
T 2edf_A 88 TASLHVEEKASGP 100 (103)
T ss_dssp EEEEEECCCSSSS
T ss_pred EEEEEEeCCCCCC
Confidence 7889998887766
No 486
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=91.75 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCc-eeeEEeeCCeeeccCCceEEee
Q psy7039 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPF-LNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 113 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
+|.|. ..+.++.+.+|+.+.|.|.+. +.|. +.+.|++++..+....++.+..
T Consensus 8 p~~~~-~~~~~~~v~~G~~v~l~C~v~--------------------------~~~~~~~v~W~k~g~~i~~~~r~~~~~ 60 (104)
T 2eny_A 8 HVGIT-KRLKTMEVLEGESCSFECVLS--------------------------HESASDPAMWTVGGKTVGSSSRFQATR 60 (104)
T ss_dssp CCCCS-BCCCCEEEESSCCEEEEEECS--------------------------SCCCSSCBCCBSSSSBCSBCSSCEEEE
T ss_pred CCEEE-ecCCCcEEcCCCcEEEEEEEc--------------------------CCCCCceeEEEECCEECCCCCCEEEEE
Confidence 44455 677889999999999999999 7764 4899999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEc
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLEN 217 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~ 217 (516)
.+...+|.|.+++.+|+|.|+|.+.|
T Consensus 61 ~~~~~~L~I~~v~~~D~G~Y~C~a~~ 86 (104)
T 2eny_A 61 QGRKYILVVREAAPSDAGEVVFSVRG 86 (104)
T ss_dssp ETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred cCCEEEEEECCCCHHHCEEEEEEECC
Confidence 88888999999999999999999865
No 487
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=99.11 E-value=1.1e-09 Score=96.64 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=92.2
Q ss_pred CCCCCCCCceeeeccCCeeEEEecCCCCCCCCceeeccccccccccccEEEEcCCeEEEEEEEeeecCCceEEEECCeec
Q psy7039 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396 (516)
Q Consensus 317 ~p~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l 396 (516)
.|.+|.. +.+..++.+++.|+|.+|.+ .+.+|. |.|...+
T Consensus 6 ~p~~P~~-l~~~~~~~~sv~l~W~~p~~----~i~~Y~--------------------------------v~~~~~~--- 45 (186)
T 1qr4_A 6 DLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYR--------------------------------LTYVSPS--- 45 (186)
T ss_dssp --CCCEE-EEEESCCSSEEEEEEECCSS----CCSEEE--------------------------------EEEECTT---
T ss_pred CCcCCCc-eEEEecCCCEEEEEEeCCCC----CccEEE--------------------------------EEEEeCC---
Confidence 4444433 77888899999999998853 455551 1222111
Q ss_pred CCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEEEEecCCCCCCCCcccccccCCeEEEEeeCCCC
Q psy7039 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLD 476 (516)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l~v~~~p~~P~~~l~~~~~~~~~~~l~W~~p~~ 476 (516)
+.............+.|.+|.+ ...|.|++.|.|..|.. ....+.+...|.+| .++.+..++.+++.|+|++|.
T Consensus 46 --~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~a~~~~~~s-~~~~~~~~t~p~~P-~~l~~~~~~~~sv~l~W~~p~- 119 (186)
T 1qr4_A 46 --GKKNEMEIPVDSTSFILRGLDA-GTEYTISLVAEKGRHKS-KPTTIKGSTVVGSP-KGISFSDITENSATVSWTPPR- 119 (186)
T ss_dssp --CCEEEEEECTTCSEEEEESCCS-SCEEEEEEEEESSSCBC-CCEEEEEECCCCCC-SCEEEESCCSSCEEEEECCCS-
T ss_pred --CCeeEEECCCCCCEEEECCCCC-CCEEEEEEEEEcCCccC-CCEEEEEECCCCCC-CccEEEEeCCCEEEEEEECCC-
Confidence 0111122233445788999999 99999999999975543 34566777778888 799999999999999999874
Q ss_pred CCCCCcceEEEEEEecCCCc
Q psy7039 477 DGGSPITNYVVEKYESATGV 496 (516)
Q Consensus 477 ~~~~~i~~Y~v~~~~~~~~~ 496 (516)
+.+.+|.|+|+..+.+.
T Consensus 120 ---~~i~~Y~v~~~~~~~~~ 136 (186)
T 1qr4_A 120 ---SRVDSYRVSYVPITGGT 136 (186)
T ss_dssp ---SCCSEEEEEEEETTCCC
T ss_pred ---CcccEEEEEEEeCCCCC
Confidence 45999999999886544
No 488
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.11 E-value=1.3e-10 Score=105.53 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=93.5
Q ss_pred EecCCeEEEEEeeeeccccccCccccccccccCccceeecCc---C-ceeeEEeeCCeeeccCCceEEe-ecC----Cee
Q psy7039 126 IKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSE---P-FLNHGWSINGQVCQIGGRADVQ-TTK----SET 196 (516)
Q Consensus 126 v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p-~~~i~W~~~~~~~~~~~~~~~~-~~~----~~~ 196 (516)
+.+|+.+.|.|.+. +. | .+.|.|++++..+......... ..+ ...
T Consensus 23 v~~G~~v~L~C~~~--------------------------g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (218)
T 2rgs_A 23 LMISLTPKVTCVVV--------------------------DVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVS 76 (218)
T ss_dssp HCTTSCCEEEEEEE--------------------------EECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEE
T ss_pred hccCCCeeEEEEEc--------------------------CCccCCCceEEEEEECCccccCcccccccccCCCeEEEEE
Confidence 67899999999998 65 3 4799999999776532211111 111 235
Q ss_pred EEEeccCCCCCCeeEEEEEEcCCCce--EEEEEe--ec---eeeee----ccccCCceEEEEEEEEccCC-CCCc-eecc
Q psy7039 197 VLDIPFCSRSDTGHYSLTLENNLGTA--TASAHV--TG---TEFTD----NNVHEGKAYEYRVSAVNAAG-TEKP-KISL 263 (516)
Q Consensus 197 ~l~i~~~~~~d~g~Y~c~~~~~~g~~--~~~~~~--~~---~~~~~----~~l~~g~~~~~~~~~~~~~g-~p~p-~i~W 263 (516)
.|.|.+++.+|+|.|+|.+.|..+.. ...+.. .. ..+.. ....+|....+.|.+ .| .|++ .++|
T Consensus 77 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~---~g~~P~~~~v~W 153 (218)
T 2rgs_A 77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLV---VGFNPGDISVEW 153 (218)
T ss_dssp EEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEE---EEEBSSCCEEEE
T ss_pred EEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEE---EeeeCCCcEEEE
Confidence 79999999999999999999987653 222211 10 11111 111258999999999 56 5665 8999
Q ss_pred cccccce---EEEE-Eecceee------EEEccCCCCCceEEEEEEEecCCCc
Q psy7039 264 DALIGKR---IKEF-VTSTTAS------LNIKNSVRKDSGIYKIEAKNDYGID 306 (516)
Q Consensus 264 ~~~~~~~---~~~~-~~~~~~~------l~i~~l~~~d~g~y~c~a~n~~g~~ 306 (516)
.+..... .... ....++. |.|......|.|.|+|.|.|.....
T Consensus 154 ~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 154 TSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 7632211 0000 0122222 3333333445899999999986554
No 489
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=2.2e-10 Score=91.02 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=70.3
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEee
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~ 191 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+ +.|++++..+....++.+..
T Consensus 7 ~~p~~~-~~~~~~~v~~G~~v~l~C~~~--------------------------~~~~~-v~W~k~g~~~~~~~~~~~~~ 58 (106)
T 2dlt_A 7 GQLEVL-QDIADLTVKAAEQAVFKCEVS--------------------------DEKVT-GKWYKNGVEVRPSKRITISH 58 (106)
T ss_dssp CCCCEE-ECCCCEEEESSCCEECCCEES--------------------------CSSCE-EEEEESSCBCCCCSSCEEEE
T ss_pred CCCEEe-cCCCCeEEeCCCeEEEEEEEc--------------------------CCCcc-eEEEcCCEECcCCCCEEEEE
Confidence 355555 667789999999999999999 88877 99999999998888888887
Q ss_pred cCCeeEEEeccCCCCCCeeEEEEEEcCC
Q psy7039 192 TKSETVLDIPFCSRSDTGHYSLTLENNL 219 (516)
Q Consensus 192 ~~~~~~l~i~~~~~~d~g~Y~c~~~~~~ 219 (516)
.+....|.|.+++.+|+|.|+|.+.|..
T Consensus 59 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 86 (106)
T 2dlt_A 59 VGRFHKLVIDDVRPEDEGDYTFVPDGYA 86 (106)
T ss_dssp ETTEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred eCCEEEEEECCCCcCCCEEEEEEEccCC
Confidence 7888899999999999999999999873
No 490
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-10 Score=89.45 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCCccccCcccceEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeecc-CCceEEe
Q psy7039 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQI-GGRADVQ 190 (516)
Q Consensus 112 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~-~~~~~~~ 190 (516)
.+|.|. ..+..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+.. ..++.+.
T Consensus 7 ~~P~i~-~~p~~~~v~~G~~~~l~C~~~--------------------------g~p~p~v~W~~~~~~~~~~~~~~~~~ 59 (100)
T 2edj_A 7 GPPIIL-QGPANQTLAVDGTALLKCKAT--------------------------GDPLPVISWLKEGFTFPGRDPRATIQ 59 (100)
T ss_dssp SSCEEE-ECCCCEEEESSSEEEECCEEE--------------------------CSSCCEEEEEESSSEESSSCSSCEEC
T ss_pred CCCEEE-eCcCCEEEcCCCcEEEEEEEE--------------------------EcCCCEEEEEECCEECCCCCCCEEEc
Confidence 466666 566778899999999999999 999999999999988863 3444443
Q ss_pred ecCCeeEEEeccCCCCCCeeEEEEEEcCCCceEEEEE
Q psy7039 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227 (516)
Q Consensus 191 ~~~~~~~l~i~~~~~~d~g~Y~c~~~~~~g~~~~~~~ 227 (516)
...+|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 60 ---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 93 (100)
T 2edj_A 60 ---EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAV 93 (100)
T ss_dssp ---TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred ---CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence 2347999999999999999999999887655443
No 491
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.11 E-value=9.9e-10 Score=99.48 Aligned_cols=166 Identities=13% Similarity=0.105 Sum_probs=100.1
Q ss_pred ccccCCceEEEEEEEEccCCC--CCceecccccc-----------------------cceEEEEEe--cceeeEEEccCC
Q psy7039 236 NNVHEGKAYEYRVSAVNAAGT--EKPKISLDALI-----------------------GKRIKEFVT--STTASLNIKNSV 288 (516)
Q Consensus 236 ~~l~~g~~~~~~~~~~~~~g~--p~p~i~W~~~~-----------------------~~~~~~~~~--~~~~~l~i~~l~ 288 (516)
..+.+|+.+.|.|.+ .+. +.+.+.|.+.. ..++.+... .....|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~---~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 10 GLVQPSQTLSLTCTV---SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp CEECTTCCEEEEEEE---CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred eeecCCCcEEEEEEE---CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 456789999999998 443 35788995421 112222221 235689999999
Q ss_pred CCCceEEEEEEEecCCC---cceeEEEEEecCC-CCCCCCceeeeccCCeeEEEecCCCCCCCCceeecccccccccccc
Q psy7039 289 RKDSGIYKIEAKNDYGI---DMADIEVVVVSKP-GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364 (516)
Q Consensus 289 ~~d~g~y~c~a~n~~g~---~~~~~~l~v~~~p-~~p~~p~~~~~~~~~~~~l~W~~p~~~~~~~i~~y~~~~~~~~~~~ 364 (516)
.+|+|.|.|.+.|..+. ......|.|...+ .+|. +... ...
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~--i~~~---------------------------------~~~ 131 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPS--VYPL---------------------------------APG 131 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCC--EEEE---------------------------------CCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCe--EEec---------------------------------cCC
Confidence 99999999999986432 1223567776422 1211 1000 001
Q ss_pred EEEEcCCeEEEEEEEeee-cCC-ceEEEECCeecCCCCceEEEEcCCeEEE--EEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 365 MTVLAGEEFTITVPFSGR-PKP-TPIWTVNGDEVSPDGRIKFETSENQTIY--RNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~-p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l--~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
..+..|+.+.|.|.+.|. |.+ .+.|++++..+........... +...+ .+..... ++ |.|+|.|.|..|....
T Consensus 132 ~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~-~~-g~ytC~v~n~~~~~~~ 208 (215)
T 1c5d_H 132 CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTW-PS-QTVTCNVAHPASSTKV 208 (215)
T ss_dssp SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCEEET-TEEEEEEEEEESST-TT-SCCEEEEEEGGGTEEE
T ss_pred hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCcccCC-CCEEEEEEEecccC-CC-CeEEEEEEeCCCCccE
Confidence 123578999999999987 777 9999998865431111111111 22111 1223333 35 9999999999987654
Q ss_pred EE
Q psy7039 441 SC 442 (516)
Q Consensus 441 s~ 442 (516)
..
T Consensus 209 ~~ 210 (215)
T 1c5d_H 209 DK 210 (215)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 492
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.11 E-value=2.9e-10 Score=87.36 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=64.5
Q ss_pred EEEEcCCeEEEEEEEeeecCCceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeEEEEE
Q psy7039 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV 444 (516)
Q Consensus 365 ~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~s~~l 444 (516)
+.+..|+.+.|.|.+.+ |.+.+.|+++|..+..+.++.+...+....|.|.++.. .|+|.|+|.|.|. +.++.|
T Consensus 16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~----~~~~~l 89 (91)
T 2lvc_A 16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQP-SDGGEFQCVAGDE----CAYFTV 89 (91)
T ss_dssp EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCG-GGCSEEEEECSSC----EEEEEE
T ss_pred EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCCh-hhcEEEEEEEcce----EEEEEE
Confidence 34568999999999865 88899999999999888899988888888999999999 9999999998554 455555
Q ss_pred EE
Q psy7039 445 YV 446 (516)
Q Consensus 445 ~v 446 (516)
+|
T Consensus 90 tV 91 (91)
T 2lvc_A 90 TI 91 (91)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 493
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Probab=99.11 E-value=4.9e-10 Score=87.62 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=68.5
Q ss_pred CCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEEeecCCcEEEeCCCcCCCeEEEEEEEec
Q psy7039 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVN 91 (516)
Q Consensus 13 ~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n 91 (516)
.+++|.+|++..++++++.|+|.+|. +.|.+|.|+|+..++ .+..........+++.|.+|.++..|.|+++|.|
T Consensus 1 v~~~P~~l~v~~~~~~sv~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 76 (98)
T 3teu_A 1 MLDAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALK 76 (98)
T ss_dssp CCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCCceEEEEecCCEEEEEEeCCC----CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEe
Confidence 47899999999999999999999983 568999999996543 3333344556789999999999999999999999
Q ss_pred CCCCCCC
Q psy7039 92 AAGPGEA 98 (516)
Q Consensus 92 ~~g~~~~ 98 (516)
..|.+.+
T Consensus 77 ~~G~s~p 83 (98)
T 3teu_A 77 DNQESPP 83 (98)
T ss_dssp TTEECCC
T ss_pred CCCCCCC
Confidence 9987764
No 494
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=7.7e-10 Score=91.06 Aligned_cols=83 Identities=24% Similarity=0.401 Sum_probs=68.6
Q ss_pred CCCCCCCCCc-ceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeC------------CCCeEEeEEeecCCcEEEeC
Q psy7039 9 NPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK------------TGNWEKAVVVPAGETSCTVP 75 (516)
Q Consensus 9 ~~~~~p~~p~-~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~------------~~~~~~~~~~~~~~~~~~i~ 75 (516)
...++|++|. ++++..+++++|.|+|.+|..++ +..|.++|+.. ...|..+.. ...++++|.
T Consensus 11 ~~~~~P~~P~~~~~~~~~~~~sv~L~W~~p~~~g---~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~v~ 85 (127)
T 2dmk_A 11 DYLTAPNPPSIREELCTASHDTITVHWISDDEFS---ISSYELQYTIFTGQANFISLYNSVDSWMIVPN--IKQNHYTVH 85 (127)
T ss_dssp SCCSSCCCCEEEEEEEEEETTEEEEEEECSCCSS---EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEE--ECSSEEEEE
T ss_pred cccCCCcCCCCCCEEEeeeCCEEEEEECCCCCCC---ccceEEEEEEecccccccccccCCCCcEEeec--ccCCeEEEC
Confidence 3467899999 99999999999999999986333 78899988751 126876544 367899999
Q ss_pred CCcCCCeEEEEEEEecCCCCC
Q psy7039 76 GLIEGETYQFQVRAVNAAGPG 96 (516)
Q Consensus 76 ~l~~~~~y~~~~~a~n~~g~~ 96 (516)
+|+++..|.|+|+|.|..|.+
T Consensus 86 gL~p~t~Y~frV~A~N~~G~~ 106 (127)
T 2dmk_A 86 GLQSGTRYIFIVKAINQAGSR 106 (127)
T ss_dssp SCCSSCEEEEEEEEEESSCEE
T ss_pred CCCCCCEEEEEEEEEeCCCCC
Confidence 999999999999999999983
No 495
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.3e-10 Score=88.88 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred cccEEEEcCCeEEEEEEEeeecCCceEEEECCeecCC-CCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCceeE
Q psy7039 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440 (516)
Q Consensus 362 ~~~~~v~~g~~~~l~C~~~g~p~~~i~W~~~~~~l~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s~ 440 (516)
+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... ....|.|.++.. .|.|.|+|.|.|..|..+.
T Consensus 15 p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~-~d~G~Y~C~a~n~~g~~~~ 90 (100)
T 2edj_A 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRI-SDTGTYTCVATSSSGETSW 90 (100)
T ss_dssp CCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC---TTCCEEEESCCT-TTCCEEEEEEECSSCCCBC
T ss_pred cCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc---CCCEEEEccCCc-ccCEEEEEEEEcCCCCEEE
Confidence 4567889999999999999999999999999987763 3444432 123699999999 9999999999999999988
Q ss_pred EEEEEEecCC
Q psy7039 441 SCKVYVVDKP 450 (516)
Q Consensus 441 s~~l~v~~~p 450 (516)
++.|.|..+|
T Consensus 91 ~~~l~V~~~~ 100 (100)
T 2edj_A 91 SAVLDVTESG 100 (100)
T ss_dssp CEEEEEESCC
T ss_pred EEEEEEecCC
Confidence 9999998653
No 496
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=99.10 E-value=2.5e-09 Score=102.45 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred CCCCCCcceEEEeeeCCeeEEEecCCCCCCCCceeceEEEEEeCCC-CeEEeEE-eecCCcEEEeC--CCcCCCeEEEEE
Q psy7039 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVV-VPAGETSCTVP--GLIEGETYQFQV 87 (516)
Q Consensus 12 ~~p~~p~~l~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~-~~~~~~~~~i~--~l~~~~~y~~~~ 87 (516)
+...+|.++++... +..+.|+|.+|. ++.+++. |.|+|+..+. .|..... .....+.+.+. .|.+...|.++|
T Consensus 2 ~~l~~P~nv~~~~~-n~~~iL~W~pp~-~~~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV 78 (306)
T 3s98_A 2 DPLKSPQKVEVDII-DDNFILRWNRSD-ESVGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRI 78 (306)
T ss_dssp ------CCCEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEE
T ss_pred CCCCCCcEeEEEEE-CCeEEEEEcCCC-CCCCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEE
Confidence 34568999999865 666889999985 4445666 9999998655 7976421 22234555554 567999999999
Q ss_pred EEecCCCCCCC
Q psy7039 88 RAVNAAGPGEA 98 (516)
Q Consensus 88 ~a~n~~g~~~~ 98 (516)
+|.| .|.+.+
T Consensus 79 ~A~n-~~~S~~ 88 (306)
T 3s98_A 79 RAEK-ENTSSW 88 (306)
T ss_dssp EEEC-SSCEEE
T ss_pred EEEe-CCcCCC
Confidence 9999 665543
No 497
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.10 E-value=1.3e-09 Score=86.75 Aligned_cols=91 Identities=22% Similarity=0.383 Sum_probs=72.1
Q ss_pred ccCCCCCCCCCcceEEEeeeCCeeEEEe--cCCCCCCCCceeceEEEEEeCCCCeEEeEEeecCCcEEEeCCCcCCCeEE
Q psy7039 7 IKNPFDEPGKPTDLEATDWDKDHVDLQW--TPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84 (516)
Q Consensus 7 ~~~~~~~p~~p~~l~~~~~~~~~v~l~W--~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~ 84 (516)
..+.++.|++|.+|++..++.++|.|+| .+|...++ . .+|.|+|+.....+ .. .. ....++|.+|++++.|.
T Consensus 3 ~~T~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng-~-~~Y~v~y~~~~~~~-~~-~~--~~~~~~i~~L~p~t~Y~ 76 (107)
T 1x5a_A 3 SGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-N-LSYELHVLNQDEEW-HQ-MV--LEPRVLLTKLQPDTTYI 76 (107)
T ss_dssp CTTTTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSS-C-CEEEEEEECSSCEE-EE-EE--SSSEEEEESCCSSCEEE
T ss_pred ccCCCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCC-c-eEEEEEEEeCCCCc-eE-EE--ecceEEECCCCCCCEEE
Confidence 4677899999999999999999999999 88865444 4 99999998762211 11 11 23349999999999999
Q ss_pred EEEEEecCCCCCCCCCCCc
Q psy7039 85 FQVRAVNAAGPGEASKPTA 103 (516)
Q Consensus 85 ~~~~a~n~~g~~~~s~~~~ 103 (516)
|+|+|.|..|.+.++....
T Consensus 77 f~V~A~~~~G~g~~S~~~~ 95 (107)
T 1x5a_A 77 VRVRTLTPLGPGPFSPDHE 95 (107)
T ss_dssp EEEEEECSSSCCCCCCCEE
T ss_pred EEEEEECCCccCCCCCCEE
Confidence 9999999999888766443
No 498
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.10 E-value=2.6e-10 Score=103.35 Aligned_cols=131 Identities=7% Similarity=0.041 Sum_probs=83.4
Q ss_pred cCCcEEEeCCCcCCCeEEEEEEEecCCCC---CCCCCCCcceEecc-CCCCCccccCcccceEEecCCeEEEEEeeeecc
Q psy7039 67 AGETSCTVPGLIEGETYQFQVRAVNAAGP---GEASKPTAPIVAKP-KNLAPRIDRSTLNDVKIKAGQSFSFDVKEFREL 142 (516)
Q Consensus 67 ~~~~~~~i~~l~~~~~y~~~~~a~n~~g~---~~~s~~~~~~~~~~-~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 142 (516)
....+|.|.+++..|.|.|+|.|.|..|. ..... ...+.+.. ...+|.+... +....+..|+.+.|.|.+.
T Consensus 72 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~~~~~-~~~~~~~~~~~v~L~C~~~--- 146 (218)
T 3s96_B 72 GADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGG-GTKVTVLGQPKSTPTLTVF-PPSSEELKENKATLVCLIS--- 146 (218)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECC-CEEEEEESCCCBCCEEEEE-CCCHHHHHTTEEEEEEEEE---
T ss_pred CceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcC-cEEEEEecCCCCCceEEee-CCCcccccCCcEEEEEEEC---
Confidence 35678999999999999999999987651 11111 12233322 2245655422 2223345678999999999
Q ss_pred ccccCccccccccccCccceeecC-cCce-eeEEeeCCeeeccCCceE--EeecCC---eeEEEeccCCCCCCeeEEEEE
Q psy7039 143 SYTKSPLRALGVRANSTKGWVKLS-EPFL-NHGWSINGQVCQIGGRAD--VQTTKS---ETVLDIPFCSRSDTGHYSLTL 215 (516)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~-~i~W~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~g~Y~c~~ 215 (516)
+ .|.+ .+.|++++..+....... ....+. .+.|.|.....+|.|.|+|.+
T Consensus 147 -----------------------g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a 203 (218)
T 3s96_B 147 -----------------------NFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQV 203 (218)
T ss_dssp -----------------------EEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEE
T ss_pred -----------------------cccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEE
Confidence 6 5666 899999999886532111 111111 235888888889999999999
Q ss_pred EcCCCceEEE
Q psy7039 216 ENNLGTATAS 225 (516)
Q Consensus 216 ~~~~g~~~~~ 225 (516)
.|..+.....
T Consensus 204 ~n~~~~~~~~ 213 (218)
T 3s96_B 204 THEGDTVEKS 213 (218)
T ss_dssp EETTEEEEEE
T ss_pred EeCCCccccc
Confidence 9987765543
No 499
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.5e-10 Score=88.89 Aligned_cols=88 Identities=20% Similarity=0.396 Sum_probs=75.6
Q ss_pred ccccEEEEcCCeEEEEEEEeeecCC-ceEEEECCeecCCCCceEEEEcCCeEEEEEcCceecCCceEEEEEEEcCCCcee
Q psy7039 361 SIRDMTVLAGEEFTITVPFSGRPKP-TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439 (516)
Q Consensus 361 ~~~~~~v~~g~~~~l~C~~~g~p~~-~i~W~~~~~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~c~a~n~~G~~s 439 (516)
.+.+..+.+|+.+.|.|.+.+.+.+ .+.|++++..+..+.++.+...+....|.|.++.. .|+|.|+|.|. ...
T Consensus 14 ~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~----~~~ 88 (104)
T 2eny_A 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAP-SDAGEVVFSVR----GLT 88 (104)
T ss_dssp CCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCT-TTCSCEEEEET----TEE
T ss_pred cCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCH-HHCEEEEEEEC----Cee
Confidence 4567889999999999999988754 89999999999888888888777788999999999 99999999884 456
Q ss_pred EEEEEEEecCCCCC
Q psy7039 440 ASCKVYVVDKPSPP 453 (516)
Q Consensus 440 ~s~~l~v~~~p~~P 453 (516)
.++.|.|..+|..+
T Consensus 89 ~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 89 SKASLIVRERSGPS 102 (104)
T ss_dssp EEECEEEECCCSSC
T ss_pred EEEEEEEeCCCcCC
Confidence 78899998876544
No 500
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.7e-10 Score=88.74 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=64.2
Q ss_pred eEEecCCeEEEEEeeeeccccccCccccccccccCccceeecCcCceeeEEeeCCeeeccCCceEEeecCCeeEEEeccC
Q psy7039 124 VKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203 (516)
Q Consensus 124 ~~v~~g~~~~l~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 203 (516)
+.+.+|+.+.|.|.+. +.|.+ +.|++++..+....++.+...+....|.|.++
T Consensus 20 ~~v~~G~~v~l~C~~~--------------------------~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~ 72 (104)
T 2e6p_A 20 LTFTTSERVVLTCELS--------------------------RVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEA 72 (104)
T ss_dssp EEEESSSCEECCEECS--------------------------STTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSC
T ss_pred EEEeCCCcEEEEEEec--------------------------CCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCC
Confidence 7889999999999999 88888 99999999998888888887778889999999
Q ss_pred CCCCCeeEEEEEEcCCCc
Q psy7039 204 SRSDTGHYSLTLENNLGT 221 (516)
Q Consensus 204 ~~~d~g~Y~c~~~~~~g~ 221 (516)
+.+|+|.|+|.+.|..+.
T Consensus 73 ~~~D~G~Y~C~a~n~~~~ 90 (104)
T 2e6p_A 73 KVQDSGEFECRTEGVSAF 90 (104)
T ss_dssp CTTTCEEEEEECSSCCCC
T ss_pred ChhhCEEEEEEECCceEE
Confidence 999999999999886543
Done!