RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7039
(516 letters)
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 152 bits (385), Expect = 2e-42
Identities = 62/275 (22%), Positives = 97/275 (35%), Gaps = 50/275 (18%)
Query: 231 TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLN 283
E + NV G KP + + A K + L
Sbjct: 9 EELRNLNVRYQSNATLVCKV---TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
I + D+ +Y++ A N G + V
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEV--------------------------- 98
Query: 344 DDGGTPITGAPKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
KI ++ + L GE +I +PFSG+P P W D + +G
Sbjct: 99 ---------PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG 149
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + + T + D+G Y + N G D + ++ V D P PP+G VS
Sbjct: 150 HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGV-KVS 208
Query: 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
D++ +S +L+W P DGGS ITNY+VEK +
Sbjct: 209 DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE 243
Score = 111 bits (279), Expect = 1e-27
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
D P P ++ +D +D V+L WT P SDGGS IT Y+VE W + ET
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ET 254
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV L +YQF+V A N G + S+P+ P + K
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Score = 99.1 bits (247), Expect = 3e-23
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 174 WSING-QVCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W G ++ G + +Q K L I + D Y + N G+ + +A +
Sbjct: 38 WYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Query: 232 EFTDNNV--HEGKAYEYRVSA-------VNAAGTEKPKIS---LDALI---GKRIKEFVT 276
++ + +G P I+ LI G
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
S T+ + RKD+G Y + AKN +GID +E+ V P PP G + V+ +SV+
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-VSDVSRDSVN 216
Query: 337 MSWKPPVDDGGTPITG 352
++W P DGG+ IT
Sbjct: 217 LTWTEPASDGGSKITN 232
Score = 64.8 bits (158), Expect = 1e-11
Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG---RIKFETSEN 409
AP +L R++ V T+ +G PKP W G E+ DG RI+
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS--PPQGPLDVSDIT 463
+ D+ Y ++ N GS S + + V P+ + +
Sbjct: 62 HQLIIASVTD--DDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Score = 37.0 bits (86), Expect = 0.010
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 216 ENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T +T N+ +Y++RV A N G KP
Sbjct: 239 ATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKP 282
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 143 bits (362), Expect = 3e-38
Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 42/245 (17%)
Query: 254 AGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313
A D + RI+ ++SL+IK+ DSG Y EA + G + +
Sbjct: 37 AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
+ APK S+ + G
Sbjct: 97 I------------------------------------EYAPKFISNQT--IYYSWEGNPI 118
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQTIYRNKSAKRATDSGSYTIQL 431
I+ P + W + + +K ++ + I D G Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTA 177
Query: 432 VNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
N +G+ + + D PS P G + +++ + +S+ P GG PI +Y V+ E
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236
Query: 492 SATGV 496
A+ +
Sbjct: 237 VASEI 241
Score = 135 bits (342), Expect = 2e-35
Identities = 63/349 (18%), Positives = 108/349 (30%), Gaps = 61/349 (17%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W + + F + GR +V+ + L I SD+G Y + +G
Sbjct: 34 WKRAVDGFT-----FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 88
Query: 222 ATASAHVT---GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKR 270
S ++ +F N ++ + + I L A
Sbjct: 89 HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTN 148
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+K + T L I + D G Y A N G + + + P P G +
Sbjct: 149 LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVK-IIEL 207
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
+ + +S+ P GG PI +
Sbjct: 208 SQTTAKVSFNKPDSHGGVPIHH------------------------------------YQ 231
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG----SDSASCKVYV 446
V+ EV+ + + QT+ + + T + + VN G S +
Sbjct: 232 VDVKEVASEIWKIVRSHGVQTMVVLNNLEPNT-TYEIRVAAVNGKGQGDYSKIEIFQTLP 290
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
V +PSPP + + +S LS DDGG+PI Y+V+
Sbjct: 291 VREPSPP--SIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 336
Score = 102 bits (255), Expect = 8e-24
Identities = 26/98 (26%), Positives = 40/98 (40%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D P P ++ + + + + P S GG PI Y V++K+ K V +T
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM 253
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ L TY+ +V AVN G G+ SK
Sbjct: 254 VVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV 291
Score = 99.9 bits (249), Expect = 5e-23
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 3/109 (2%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWE 60
+ P EP P + L T DGG+PI Y+V+ + K +
Sbjct: 282 KIEIFQTLPVREPS-PPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQW 339
Query: 61 KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
V + + L Y+ Q+ A N G E + + KP
Sbjct: 340 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388
Score = 59.4 bits (144), Expect = 9e-10
Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 21/169 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW-------TVNGDEVSPDGRIKFET 406
P I +++ T + T+ G P P W T + S DGRI+ +
Sbjct: 2 PHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466
+ K K +DSG Y + + +G S + + P
Sbjct: 59 QHGSSSLHIKDVKL-SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP 117
Query: 467 ----CSLSWKPPLD----DGGSPIT--NYVVEKYESATGVSDLFISKSE 505
C + PP + N K S L I+ +
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTS 166
Score = 32.5 bits (74), Expect = 0.36
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269
++ YE +++A N G +P + ++ K
Sbjct: 346 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 123 bits (309), Expect = 1e-32
Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 8/142 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG--RIKFETSENQ 410
APK+ + G + IT P T W +G + IK + +
Sbjct: 19 APKLQGP---VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLS 470
+ D G+Y VN +G +S + D PS P + + +
Sbjct: 76 SYLEVTPDSE-NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID--QVEPYSSTAQVQ 132
Query: 471 WKPPLDDGGSPITNYVVEKYES 492
+ P GG PI Y E
Sbjct: 133 FDEPEATGGVPILKYKAEWRAV 154
Score = 87.6 bits (217), Expect = 6e-20
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-----TGNWEKAVVVP 66
D P P+ + + +Q+ P + GG PI Y E + W A
Sbjct: 112 DTPSSPSIDQVEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
E T+ GL TY ++ A+N G GE S + +P
Sbjct: 171 -MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS-EFKTQPV 212
Score = 85.6 bits (212), Expect = 3e-19
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 9/109 (8%)
Query: 251 VNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
IS L + IK + T + + L + D G Y A N
Sbjct: 40 CEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G + + +V P P+ + + + P GG PI
Sbjct: 100 GQESLEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 146
Score = 46.4 bits (110), Expect = 6e-06
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 174 WSINGQVCQIGGRADVQ--TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W +GQ+ ++++ T S + L++ S +D G+Y+ T N +G + +
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 232 E 232
+
Sbjct: 112 D 112
Score = 32.9 bits (75), Expect = 0.16
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
A T + Y R++A+N G +
Sbjct: 165 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI 201
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 118 bits (298), Expect = 3e-32
Identities = 43/111 (38%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNW 59
M H +P D PGKP L T V L+W P GG IT Y+VE +D G W
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITR---HTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRW 57
Query: 60 EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKP 109
KA E TV GL E Y+F+V A NAAG S+P+ I +
Sbjct: 58 LKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
Score = 61.6 bits (150), Expect = 5e-12
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PP P+ +IT + +L W P GG IT+Y+VEK + G
Sbjct: 11 IDPPGKPV-PLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG 55
Score = 46.9 bits (112), Expect = 7e-07
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PP P+ +T +V++ W P GG IT
Sbjct: 11 IDPPGKPVP-LNITRHTVTLKWAKPEYTGGFKITS 44
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 214 TLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
L N +++ EFT + + E AYE+RV A NAAG
Sbjct: 51 DLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGA 93
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 119 bits (301), Expect = 1e-31
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
S P EP P D + + + DGGSPI Y+V + + W+ +
Sbjct: 100 SEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKPEI 158
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
+P+G + L Y+ V A N G +A+ A +
Sbjct: 159 RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
Score = 91.4 bits (227), Expect = 2e-21
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 10 PFDEPGKPT--DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---V 63
P + P+ ++ + +Q+ P + GG PI Y E + W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ E T+ GL TY ++ A+N G GE S +
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
Score = 76.4 bits (188), Expect = 3e-16
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 41/186 (22%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
P P+ + + + P GG PI
Sbjct: 4 AQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK-------------------- 41
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ G W E S +G + + +T Y + +
Sbjct: 42 YKAEWRAVGEEVWHSKWYDA-KEASMEGIVTIVGLKPETTYA------------VRLAAL 88
Query: 433 NTVG----SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
N G S ++ K V +PS P+ S ++ DDGGSPI +Y+V
Sbjct: 89 NGKGLGEISAASEFKTQPVREPSAPKLEG-QMGEDGNSIKVNLIKQ-DDGGSPIRHYLVR 146
Query: 489 KYESAT 494
++
Sbjct: 147 YRALSS 152
Score = 62.1 bits (151), Expect = 3e-11
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
D PS P + + + + P GG PI Y E
Sbjct: 5 QADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 52
Score = 43.3 bits (102), Expect = 6e-05
Identities = 15/130 (11%), Positives = 26/130 (20%), Gaps = 47/130 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
A T + Y R++A+N G + T +
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI------------SAASEFKTQPV 107
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
+ S+ ++
Sbjct: 108 ----------------------------------REPSAPKLEGQMGEDGNSIKVNLIKQ 133
Query: 343 VDDGGTPITG 352
DDGG+PI
Sbjct: 134 -DDGGSPIRH 142
Score = 33.6 bits (77), Expect = 0.081
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
++ YE V A N G K
Sbjct: 162 SGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA 193
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 116 bits (292), Expect = 2e-31
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
P L D L+W PP G I GY+VE + + W A P
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
TV L G F+V VN AG E + P+ + +
Sbjct: 69 TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 61.2 bits (149), Expect = 8e-12
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S PQ V D+T + +L W+PP G I Y+VE +
Sbjct: 9 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSE 53
Score = 45.4 bits (108), Expect = 3e-06
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P VT + ++ W+PP G I G
Sbjct: 9 TSAPQHLT-VEDVTDTTTTLKWRPPDRIGAGGIDG 42
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
V FT ++ G +RV VN AG +P
Sbjct: 56 VPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEP 94
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 119 bits (300), Expect = 2e-31
Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 2/105 (1%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKAVVV 65
D P LE ++ + V L W+ ITGY + G + KA +
Sbjct: 110 GAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIE 169
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
A S + L Y+F++++ +AA E S +PK
Sbjct: 170 GAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 91.8 bits (228), Expect = 2e-21
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKA--------- 62
PT T + V L+W P + G PI + V+ + NW+
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 63 --VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
+ +V L TY+F++ AV + + S +A +P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGA 111
Score = 71.4 bits (175), Expect = 2e-14
Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 37/187 (19%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PP P + T ++ ESV + W P +DG PI F +
Sbjct: 2 TYPP-TPPNVTRLSDESVMLRWMVPRNDGL-PIVI--------------------FKV-- 37
Query: 378 PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTV 435
W D + K +Y ++ V +
Sbjct: 38 -QYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH---TYRFRILAVYSN 93
Query: 436 G----SDSASCKVYVVDKPSPPQGP---LDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S++++ P L++ + + + L W D IT Y
Sbjct: 94 NDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAY 153
Query: 489 KYESATG 495
S++
Sbjct: 154 YRPSSSA 160
Score = 51.3 bits (123), Expect = 1e-07
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 42/132 (31%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTA 280
S + ++ Y +R+ AV + K +F A
Sbjct: 60 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE--------SNTSAKFYLQPGA 111
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+L+ P + + +V + W
Sbjct: 112 ALDP---------------------------------MPVPELL-EIEEYSETAVVLHWS 137
Query: 341 PPVDDGGTPITG 352
D ITG
Sbjct: 138 LASDADEHLITG 149
Score = 34.4 bits (79), Expect = 0.056
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAG-----------TEKPK 260
F + YE+++ + +AA T++PK
Sbjct: 171 AHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 115 bits (291), Expect = 2e-31
Identities = 21/101 (20%), Positives = 36/101 (35%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P T + LQW+ P Y++EM+++T + + + T
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
V L Y+F+V A N+ G S+ +
Sbjct: 68 VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 59.3 bits (144), Expect = 4e-11
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P P+ ++ SL W P +Y++E E +G
Sbjct: 4 GSSGPSMPASPV-LTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG 52
Score = 43.9 bits (104), Expect = 9e-06
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P P P+ T +S+ W P
Sbjct: 4 GSSGPSMPASPV-LTKAGITWLSLQWSKPSGTPSDEGIS 41
Score = 38.5 bits (90), Expect = 6e-04
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+T N+ Y+++V A N+ G P
Sbjct: 56 KPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNP 92
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 116 bits (292), Expect = 2e-31
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNW 59
S P P + + V + W P +GG PI + VE K K G+W
Sbjct: 6 SGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDW 64
Query: 60 EKAV-VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
A +P S + GL +G +Y+F+VRA+N G E S P+ P V
Sbjct: 65 ILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 65.1 bits (159), Expect = 4e-13
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 434 TVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ GS + + P P P +S + S ++W P +GG PI ++ VE +
Sbjct: 2 SSGSSGSQPDHGRLSPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKL 58
Score = 44.7 bits (106), Expect = 5e-06
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ + +S P P P +T + SV ++W P +GG PI
Sbjct: 6 SGSQPDHGRLSPPEAPDRPT-ISTASETSVYVTWIPR-GNGGFPIQS 50
Score = 32.7 bits (75), Expect = 0.076
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
AT++ + + +G +Y++RV A+N G +P
Sbjct: 66 LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEP 104
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 115 bits (290), Expect = 4e-31
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAG 68
PT L V ++W PP G + + GYV+E + T +W A
Sbjct: 4 GSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+T T+ GL +V+AVNAAG E + PI+ K
Sbjct: 64 KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104
Score = 59.7 bits (145), Expect = 2e-11
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
SPP L V +T + ++ W+PP G + + YV+E T
Sbjct: 8 TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTE 52
Score = 44.7 bits (106), Expect = 4e-06
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PPT +VT +V+M W+PP G + G
Sbjct: 8 TSPPTLLT-VDSVTDTTVTMRWRPPDHIGAAGLDG 41
Score = 36.6 bits (85), Expect = 0.003
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+ T+FT + RV AVNAAG +P
Sbjct: 55 IVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEP 93
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 114 bits (288), Expect = 1e-30
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKT----GN 58
++ P + PG PT+L ++ V LQ+ P DG + I+ ++VE +
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEE 65
Query: 59 WEKA--VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
W + S VP L Y F++R VN G S+P+ I
Sbjct: 66 WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118
Score = 62.4 bits (152), Expect = 4e-12
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 436 GSDSASCKVYV---VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S + + P PP +S+I P S +L ++P DG + I+ ++VE
Sbjct: 1 GSSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVG 58
Query: 493 ATGVSDLFISKSEVKTGSLMTS 514
G + ++ ++ S
Sbjct: 59 VVGEGEEWLLIHQLSNEPDARS 80
Score = 41.2 bits (97), Expect = 9e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V PGPPT + + P SV++ ++P DG T I+
Sbjct: 13 VPPELPGPPTNLG-ISNIGPRSVTLQFRPG-YDGKTSISR 50
Score = 32.7 bits (75), Expect = 0.073
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
S +++ Y +R+ VN GT P
Sbjct: 71 QLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 113 bits (284), Expect = 3e-30
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ + EP P + K+ + LQW P SD GS I +V+E + GN E
Sbjct: 6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEF 64
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ + L +F++ A N G S+ +
Sbjct: 65 CQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Score = 65.5 bits (160), Expect = 2e-13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS A + +P P P +++ T S +L WK P D GS I N+V+E E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEG 58
Score = 45.9 bits (109), Expect = 2e-06
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G A+I + +P P P T S+++ WK P D G+ I
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPR-IANRTKNSLTLQWKAP-SDNGSKIQN 50
Score = 35.5 bits (82), Expect = 0.009
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 220 GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
G + +F + ++R+SA N GT
Sbjct: 62 GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGF 101
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 112 bits (283), Expect = 5e-30
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
D PG P ++ D ++V L WTPP DG + ITGY ++ DK + W + T
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHR-T 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
S T+ L+ G Y F+V + N G E + T ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 82.4 bits (204), Expect = 3e-19
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS AS + ++D+P PPQ + + D+ E+ +L+W PP DDG + IT Y ++K + +
Sbjct: 4 GSSGASIDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM 62
Score = 58.1 bits (141), Expect = 9e-11
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G A I++ ++ +PGPP V E+V+++W PP DDG ITG
Sbjct: 3 SGSSGASIDIQIIDRPGPPQIVK-IEDVWGENVALTWTPPKDDGNAAITG 51
Score = 37.3 bits (87), Expect = 0.002
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T H T T + G Y +RV + N G +
Sbjct: 66 TVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSED 102
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 114 bits (287), Expect = 1e-29
Identities = 38/104 (36%), Positives = 51/104 (49%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
D PG P DL+ + K V L W PP+ DGGS I Y+VE ++ T V +TS
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
V L EG +Y F+V A N G G ++ + A + L P
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPG 107
Score = 113 bits (285), Expect = 2e-29
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA 62
+ + P P + D ++ V L W P DGGS I GY+VEM+ K + W
Sbjct: 93 TAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATC 152
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
V T T+ GLI+GE Y F+V A N G + + + P++AK
Sbjct: 153 ATVKV--TEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 78.2 bits (193), Expect = 6e-17
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 46/187 (24%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
+ PGPP VT SV+++W PP+ DGG+ I +
Sbjct: 2 AMDTPGPPQDLK-VKEVTKTSVTLTWDPPLLDGGSKIKN--------------------Y 40
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL-- 431
+ R ++ T+ ++T ++ + SY ++
Sbjct: 41 IVEK----RESTRKAYS------------TVATNCHKTSWKVDQLQEGC---SYYFRVLA 81
Query: 432 VNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
N G + V ++P PP + D+T S SLSW+ P DGGS I Y+VE
Sbjct: 82 ENEYGIGLPAETAESVKASERPLPPGKIT-LMDVTRNSVSLSWEKPEHDGGSRILGYIVE 140
Query: 489 KYESATG 495
+
Sbjct: 141 MQTKGSD 147
Score = 55.4 bits (134), Expect = 4e-09
Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 47/130 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
T + + T + + + EG +Y +RV A N G P + E S AS
Sbjct: 54 TVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLP--A----------ETAESVKAS- 100
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
+P PP VT SVS+SW+ P
Sbjct: 101 ---------------------------------ERPLPPGKIT-LMDVTRNSVSLSWEKP 126
Query: 343 VDDGGTPITG 352
DGG+ I G
Sbjct: 127 EHDGGSRILG 136
Score = 36.6 bits (85), Expect = 0.009
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
A V TE T + +G+ Y +RVSA N G
Sbjct: 150 ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGI 183
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 111 bits (279), Expect = 2e-29
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 12 DEPGKPTDLEAT--DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAG 68
P P AT ++ ++L WT P DG SP+ Y++EM + W + V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPK 74
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TS TV GL+ +YQF++ AVN G G+ SK T +
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115
Score = 73.5 bits (181), Expect = 4e-16
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 434 TVGSDSASCKVYVVDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ GS S + V P P+ P +S + + +L+W P DG SP+ Y++E E+
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSEN 60
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 303 YGIDMADIEVVVVSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITG 352
G + V P P P +TV +++++W P DG +P+
Sbjct: 3 SGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIR 52
Score = 35.8 bits (83), Expect = 0.007
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
AS T T + ++Y++R+ AVN G +
Sbjct: 66 VLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQF 104
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 109 bits (275), Expect = 4e-29
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 10 PFDEPGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG 68
PG K + L+W PP+ DGGSPI+ Y VEM + + V
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGS 63
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
E CTV L+ G+TY F++RA N G G S+ A
Sbjct: 64 EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104
Score = 62.7 bits (153), Expect = 2e-12
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P P + L W PPL DGGSPI+ Y VE
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD 54
Score = 49.3 bits (118), Expect = 1e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP P + + + W PP+ DGG+PI+
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISC 43
Score = 36.9 bits (86), Expect = 0.002
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 216 ENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
+ E T +++ GK Y +R+ A N G
Sbjct: 50 PIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGF 90
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 118 bits (298), Expect = 1e-28
Identities = 65/441 (14%), Positives = 126/441 (28%), Gaps = 96/441 (21%)
Query: 86 QVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT 145
A N G + +A + + P D V + G+S +F T
Sbjct: 173 NCSASNPLG---TASSSAKLTLSEHEVPPFFDLK-PVSVDLALGESGTFKCH------VT 222
Query: 146 KSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205
+ + W+ + + + GG + ++ L + ++
Sbjct: 223 GTA------------------PIKIT--WAKDNREIRPGGNYKMTLVENTATLTVLKVTK 262
Query: 206 SDTGHYSLTLENNLGTATASAHVT-------GTEFTDN-NVHEGKAYEYRVSAVNAAGTE 257
D G Y+ N G + SA + + + V + + Y G+
Sbjct: 263 GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI---GGSP 319
Query: 258 KPKIS--LDA---LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV 312
+ K+ D + + + A L + N +DSG Y EA N G + +
Sbjct: 320 EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
V P + L G +
Sbjct: 380 KVKE------------------------------------PPVFRKKP--HPVETLKGAD 401
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ G P W + E+ + K + T + A D G Y +
Sbjct: 402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 460
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVS-----DITPESCSLSWKPPLD-----DGGSPI 482
N VGSD+ + + P + D+S ++ + ++ P+ D G +
Sbjct: 461 NDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ-ATIEGAEPISVAWFKDKGEIV 519
Query: 483 TNYVVEKYESATGVSDLFISK 503
+ ++ L S+
Sbjct: 520 RESDNIWISYSENIATLQFSR 540
Score = 109 bits (274), Expect = 1e-25
Identities = 57/354 (16%), Positives = 99/354 (27%), Gaps = 63/354 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + +Q + L I SD G Y+ EN++G +SA +
Sbjct: 39 WYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER 98
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALI---GKRIKEFVTST 278
+ D + G + G+E ++S D + ++
Sbjct: 99 KLPPSFARKLKDVHETLGFPVAFECRIN---GSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
A+L I + + G Y A N G + ++ + PP
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF---------------- 199
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
P + + GE T +G W + E+ P
Sbjct: 200 -----------FDLKPV--------SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP 240
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
G K EN D+G YT N G DS S ++ V + P +
Sbjct: 241 GGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEP 299
Query: 459 VSDITPES-----CSLSWKPPLD----DGGSPITNYVVEKYESATGVSDLFISK 503
+ + C + P + + I + V+ L +
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 353
Score = 104 bits (260), Expect = 7e-24
Identities = 54/289 (18%), Positives = 98/289 (33%), Gaps = 57/289 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + Q + + +S VL++ S D+G Y+ N G+A++S +
Sbjct: 325 WYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384
Query: 230 ---GTEFTDNNVHEGKAYEYRVS-AVNAAGTEKPKIS-----LDALIGKRIKEFVTSTTA 280
+ +G V GT ++S + GK+ K +
Sbjct: 385 PVFRKKPHPVETLKGA----DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 440
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
S++I N D G Y+ +A ND G D + + +
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA------------------------ 476
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P+ L D++ + GEE + G + W + E+ +
Sbjct: 477 ------------PPRFVKKL--SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES 522
Query: 401 -RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
I SEN + A+ A ++G YT Q+ N G+ + V++
Sbjct: 523 DNIWISYSENIATLQFSRAEPA-NAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 61.0 bits (148), Expect = 4e-10
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P L + GE T+ G P+ W ++ K + N
Sbjct: 5 PPYFIEPLE--HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+D G YT + N+VG+ ++S + + ++ PP
Sbjct: 63 LVINKVDH-SDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 108 bits (271), Expect = 2e-28
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + P+I D V AGE + +G T W ++ +K E
Sbjct: 1 GSSGSSGPQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
SEN + +A++ G YT+ + N +GS A + VVDKP PP G
Sbjct: 59 SENGSKLTILAARQE-HCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 60.8 bits (148), Expect = 1e-11
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP 324
+ +K + + L I + ++ G Y + +N G A + + VV KP PP G
Sbjct: 51 SEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 54.6 bits (132), Expect = 1e-09
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 27/123 (21%)
Query: 107 AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS 166
+ P+I + D K++AG+S K T +
Sbjct: 1 GSSGSSGPQIIQ-FPEDQKVRAGESVELFGK------VTGTQ------------------ 35
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
W + Q V+ +++ + L I + G Y+L +EN LG+ A
Sbjct: 36 PITCT--WMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQV 93
Query: 227 HVT 229
++T
Sbjct: 94 NLT 96
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 113 bits (285), Expect = 3e-28
Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 50/299 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + + + L I S+ D G Y + L+++ G + +
Sbjct: 41 WYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF 98
Query: 230 --------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIG 268
T+ + EG V+ E K++ +
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY----YVEDLKVNWSHNGSAIRY--S 152
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYT 328
R+K VT L I D G Y +E + +++ + ++
Sbjct: 153 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---YDEAYAEFQ 209
Query: 329 TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 388
+ +++ + V + G P +T+ G+ +T G P P
Sbjct: 210 RLKQAAIAEKNRARV------LGGLPD--------VVTIQEGKALNLTCNVWGDPPPEVS 255
Query: 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
W N ++ D + +T Y + DSG Y + + N GS+++ V V
Sbjct: 256 WLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 75.3 bits (185), Expect = 4e-15
Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 32/196 (16%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
+L I +KD+GIY++ K+D G D + +++V + ++ +
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDL--- 116
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
K G + + W+ NG +
Sbjct: 117 -KIQSTAEGIQLY------------------------SFVTYYVEDLKVNWSHNGSAIRY 151
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
R+K + Q + D G Y ++L + + + + + +
Sbjct: 152 SDRVKTGVTGEQIWLQINEPTP-NDKGKYVMELFDGKTGHQKTVDLSGQ---AYDEAYAE 207
Query: 459 VSDITPESCSLSWKPP 474
+ + + +
Sbjct: 208 FQRLKQAAIAEKNRAR 223
Score = 62.6 bits (152), Expect = 6e-11
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
P LS V + + K T I W + E+S D + F+
Sbjct: 7 GPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES 466
+ S K D+G Y + L + G D + K+ ++
Sbjct: 64 LITEFSKK---DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 107 bits (270), Expect = 3e-28
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK---TGNWEKAVVV 65
+D P P DLE TD V L WTP D SPIT +++E +D G W V
Sbjct: 12 PVYDVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
G + L Y F+V AVN+ G S+ + + K
Sbjct: 71 S-GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Score = 64.7 bits (158), Expect = 6e-13
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 435 VGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
S V D P+PP ++D +S LSW P DD SPIT +++E ++
Sbjct: 2 SSGSSGPTPAPVYDVPNPPFDLE-LTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMH 59
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V P PP T +SV +SW P DD +PIT
Sbjct: 3 SGSSGPTPAPVYDVPNPPFDLE-LTDQLDKSVQLSWTPG-DDNNSPITK 49
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 214 TLENNLGTATASAHVTGTE-FTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+ G V+GT+ N+ Y +RV AVN+ G P
Sbjct: 56 DAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP 102
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 107 bits (269), Expect = 4e-28
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPA 67
+ D PG P+ + TD K+ V L W P + G P + Y++E ++ N + V
Sbjct: 11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
T TV GL Y F VRA+N G + S + P+ +
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 70.1 bits (172), Expect = 7e-15
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S S+ + D P PP P V+D+T S +LSW+P G P + Y++E + +
Sbjct: 3 SGSSGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVS 59
Score = 46.6 bits (111), Expect = 1e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ + PGPP+ P T VT SV++SW+P G P +
Sbjct: 6 SGKNYDLSDLPGPPSKPQ-VTDVTKNSVTLSWQPG-TPGTLPASA 48
Score = 33.9 bits (78), Expect = 0.028
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T + HV T +T + Y + V A+N G P
Sbjct: 64 TVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 106 bits (267), Expect = 6e-28
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVP 66
+ EP P+ + L T DGG+PI Y+V+ + K + V
Sbjct: 3 EASMREPSPPS-IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ + L Y+ Q+ A N G E + + KP +
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
Score = 53.7 bits (129), Expect = 3e-09
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+ +PSPP + + +S LS DDGG+PI Y+V+
Sbjct: 5 SMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 51
Score = 41.0 bits (96), Expect = 9e-05
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ +P PP+ I + +S +S DDGG PI
Sbjct: 4 ASMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILE 40
Score = 33.7 bits (77), Expect = 0.037
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
++ YE +++A N G +P
Sbjct: 56 EKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEP 92
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 103 bits (260), Expect = 5e-27
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P P DL T+ V L W P+T Y ++ + V T
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
++ GL Y F+V AVN+ G G S+ +
Sbjct: 63 YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100
Score = 50.4 bits (121), Expect = 4e-08
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P PP + V++ T S +L+W P+T Y ++ + T
Sbjct: 6 SGPKPPIDLV-VTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTE 49
Score = 37.7 bits (88), Expect = 0.001
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 220 GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
G V T ++ + Y +RV AVN+ G P
Sbjct: 50 GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPP 89
Score = 34.2 bits (79), Expect = 0.016
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P PP + T T SV+++W P+T
Sbjct: 8 PKPPIDLV-VTETTATSVTLTWDSG---NSEPVTY 38
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 103 bits (259), Expect = 9e-27
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGET 70
P P D+ A+ + L W P SD Y V + GE
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM 75
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L+ Y F+V A N G GE+S P
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 59.7 bits (145), Expect = 3e-11
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS PS P+ + S ++ L+W+ P D Y V +
Sbjct: 4 GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
Score = 41.6 bits (98), Expect = 7e-05
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P + + V+ + ++W+ P D
Sbjct: 18 PSAPRDVV-ASLVSTRFIKLTWRTPASDPHGDNLT 51
Score = 30.5 bits (69), Expect = 0.48
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 225 SAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
++H + T N+ Y +RV A N G
Sbjct: 69 TSHPGEMQVTIQNLMPATVYIFRVMAQNKHG 99
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 105 bits (264), Expect = 1e-25
Identities = 44/286 (15%), Positives = 84/286 (29%), Gaps = 55/286 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W+ + + + GG + ++ L + ++ D G Y+ N G + SA +
Sbjct: 39 WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP 98
Query: 230 ---GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS-----LDALIGKRIKEFVTSTTA 280
+ + V + + Y G+ + K+ + + + + A
Sbjct: 99 PRFIKKLEPSRIVKQDEHTRYECKIG---GSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
L + N +DSG Y EA N G + + V
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------------------------ 191
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P + L G + + G P W + E+
Sbjct: 192 ------------PPVFRKKP--HPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK 237
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ K + T + A D G Y + N VGS + + +
Sbjct: 238 KYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTCVGSITL 282
Score = 78.6 bits (194), Expect = 2e-16
Identities = 39/213 (18%), Positives = 64/213 (30%), Gaps = 43/213 (20%)
Query: 253 AAGTEKPKIS-----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
GT KI+ + G K + TA+L + + D+G Y A N G D
Sbjct: 29 VTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 88
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
++ V P + + V
Sbjct: 89 CSAQLGVQEPP------------------------------RFIKKLEPS-------RIV 111
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
E G P+ +W + E+ + + E+ + + DSG Y
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLS-VEDSGDY 170
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
T + N GS S+S + V + P + P V
Sbjct: 171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE 203
Score = 69.4 bits (170), Expect = 3e-13
Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 12/160 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P + + GE T +G W + E+ P G K EN
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES-----C 467
D+G YT N G DS S ++ V + P + + + C
Sbjct: 63 LTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 468 SLSWKPPLD----DGGSPITNYVVEKYESATGVSDLFISK 503
+ P + + I + V+ L +
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 161
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 100 bits (250), Expect = 1e-25
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---VVV 65
D P P+ + + +Q+ P + GG PI Y E + W
Sbjct: 3 HMDTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPI 105
+ E T+ GL TY ++ A+N G GE S T P+
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV 105
Score = 55.9 bits (135), Expect = 4e-10
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 447 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+D PS P + + + + P GG PI Y E
Sbjct: 4 MDTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 50
Score = 42.8 bits (101), Expect = 2e-05
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ + + + P GG PI
Sbjct: 7 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 39
Score = 36.2 bits (84), Expect = 0.004
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
A T + Y R++A+N G
Sbjct: 56 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGL 91
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 108 bits (271), Expect = 3e-25
Identities = 57/506 (11%), Positives = 116/506 (22%), Gaps = 110/506 (21%)
Query: 8 KNPFDEPGKPTDLEATDWDKD-----HVDLQWTPPISDGGSPITGYVVEMK-------DK 55
P P +L + + V + W P + P+ Y V
Sbjct: 261 SKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP-EEPDIPVHHYKVFWSWMVSSKSLV 319
Query: 56 TGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
++ + S + L Y +++A+ G + +
Sbjct: 320 PTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN 379
Query: 116 IDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS 175
++ + + + P R L V A + + + W
Sbjct: 380 KEQLV----------KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQD----GQLQVKVYWK 425
Query: 176 INGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTD 235
G+ +S
Sbjct: 426 KTEDPTVNRYHVRWFPEACA-------------------HNRTTGSEASSGMTHENYIIL 466
Query: 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295
++ Y+ V + K + +T +K K G
Sbjct: 467 QDLSFSCKYKVTVQPIRPKSHSKAEAV------------FFTTPPCSALKGKSHKPIGCL 514
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPK 355
+ V++KP + + SWK + P+TG
Sbjct: 515 GEAGH---------VLSKVLAKPENLSASFIV-QDVNITGHFSWKMAKANLYQPMTG--- 561
Query: 356 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRN 415
F +T W E + S++Q + +
Sbjct: 562 -----------------FQVT------------WAEVTTESRQNSLPNSIISQSQILPSD 592
Query: 416 KSAKRATD---SGSYTIQL--VNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSL 469
+ S Y +++ + G + + P + P
Sbjct: 593 HYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPH---- 648
Query: 470 SWKPPLDDGGSPITNYVVEKYESATG 495
+KP + G PI N ++ + TG
Sbjct: 649 HYKPSPERYGKPIPNPLLGLDSTRTG 674
Score = 75.0 bits (183), Expect = 2e-14
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK---------DKTGNWEKAVV 64
+L T+ ++++W+ + YVV+ + D +W+
Sbjct: 161 LKPRKELRFTELQSGQLEVKWSSK-FNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQ 219
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ + + YQF+V AVN G + P+ + AP
Sbjct: 220 TT--DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP 267
Score = 58.4 bits (140), Expect = 4e-09
Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 47/232 (20%)
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGT 348
+ SG+ K N G + + P P + +T + + + W +
Sbjct: 132 NECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIE 190
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
P+ + + ++ P+ +
Sbjct: 191 PVI---------------------YVVQRRWNYGIHPSE---------DDATHWQTVAQT 220
Query: 409 NQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVV---DKPSPPQGPLDV---- 459
+ + + Y ++ VN G+ + PS P P ++
Sbjct: 221 TDERVQLTDIRPSRW---YQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLAN 277
Query: 460 ---SDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
+ + ++ W P + P+ +Y V + S + K KT
Sbjct: 278 STVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPTKKKRRKT 328
Score = 51.1 bits (121), Expect = 6e-07
Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 39/262 (14%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVEMK----- 53
+ P +P ++ A + V + W + Y V
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT---EDPTVNRYHVRWFPEACA 445
Query: 54 DKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLA 113
+A E + L Y+ V+ + +A A P A
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE---AVFFTTPPCSA 502
Query: 114 PRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHG 173
+ +AG S + + LS + + + G N
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIV------QDVNITGHFSWKMAKANLY 556
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
+ G + T +L N++ + +
Sbjct: 557 QPMTGFQVT--------------------WAEVTTESRQNSLPNSIISQSQILPSDHYVL 596
Query: 234 TDNNVHEGKAYEYRVSAVNAAG 255
T N+ Y V + G
Sbjct: 597 TVPNLRPSTLYRLEVQVLTPGG 618
Score = 36.5 bits (83), Expect = 0.020
Identities = 7/57 (12%), Positives = 12/57 (21%), Gaps = 4/57 (7%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
+ P P H + P G PI ++ +
Sbjct: 624 IKTFRTPELPPSSAHRSHLKHRHPHH----YKPSPERYGKPIPNPLLGLDSTRTGHH 676
Score = 36.5 bits (83), Expect = 0.022
Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 48/141 (34%)
Query: 216 ENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFV 275
E++ A T ++ + Y++RV+AVN GT + + +
Sbjct: 208 EDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGF--TAPS-------KHF 258
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT----GPIDYTTVT 331
S+ S P P +
Sbjct: 259 RSSKDP----------------------------------SAPPAPANLRLANSTVNSDG 284
Query: 332 PESVSMSWKPPVDDGGTPITG 352
+V++ W P + P+
Sbjct: 285 SVTVTIVWDLPEEPDI-PVHH 304
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 99.0 bits (247), Expect = 4e-25
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKA 62
S + P PT L + + + W P + P+ GY VE + G +
Sbjct: 8 SHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRL 65
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ +TS V L+ +Y F+VRA + G G + I ++
Sbjct: 66 NIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQV 112
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS + P P + S + P S +SW+ P + P+ Y VE G
Sbjct: 4 GSSGSHDSRLTAGVPDTPTRLV-FSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGG 60
Score = 37.0 bits (86), Expect = 0.003
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P PT + ++ + P S+ +SW+ P + P+ G
Sbjct: 18 PDTPTRLV-FSALGPTSLRVSWQEPRCER--PLQG 49
Score = 31.6 bits (72), Expect = 0.17
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
Y L L + T ++ +Y +RV A + G +
Sbjct: 53 EYQLLNGGELHRLNIP-NPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE 101
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 98.1 bits (245), Expect = 5e-25
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P + + T + W P G+ +T Y +E G+ + P S
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVEGSMQICYCGP--GLSYE 64
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
+ GL TY +V+A++ G G S+ A +
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSEVVACV 96
Score = 48.8 bits (117), Expect = 1e-07
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P + P V+ + ++W+ P G+ +T Y +E
Sbjct: 8 PDQCKPP-QVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGV 48
Score = 37.7 bits (88), Expect = 0.001
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P T + ++W+ P GT +T
Sbjct: 8 PDQCKPPQ-VTCRSATCAQVNWEVP-LSNGTDVTE 40
Score = 36.1 bits (84), Expect = 0.004
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 211 YSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
Y L G+ G + + Y RV A++ G
Sbjct: 41 YRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGA 86
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 96.8 bits (241), Expect = 3e-24
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKA---VV 64
+ P P+ + + +Q+ P + GG PI Y E + W
Sbjct: 3 SGSSGPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI---VAKPKNLAPRIDRST 120
+ E T+ GL TY ++ A+N G GE S + V +P AP+++ S
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPS--APKLEGSG 118
Score = 52.1 bits (125), Expect = 2e-08
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS P + + + + P GG PI Y E
Sbjct: 8 PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE 51
Score = 40.5 bits (95), Expect = 2e-04
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ + + + P GG PI
Sbjct: 8 PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILK 40
Score = 35.1 bits (81), Expect = 0.011
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
A T + Y R++A+N G
Sbjct: 57 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGL 92
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 99.0 bits (247), Expect = 3e-24
Identities = 35/182 (19%), Positives = 59/182 (32%), Gaps = 35/182 (19%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ K T +L + ++D G+Y A N+ G ++++ + P G
Sbjct: 51 SRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYP-- 108
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
G + V + GRP P
Sbjct: 109 ---------------------------------LKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
W + I E +E+ T K+ +R T +G Y +QL N G+ A V +
Sbjct: 136 TWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Query: 448 DK 449
DK
Sbjct: 196 DK 197
Score = 72.0 bits (177), Expect = 1e-14
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP I ++ +D+T GE ++ GRP P W G E+ + K +
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
+ + D G YT N VG S K+ + P G
Sbjct: 65 LTVMTEE-QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY 114
Score = 62.8 bits (153), Expect = 1e-11
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 19/160 (11%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W G+ + + + L + + D G Y+ N +G S+ +
Sbjct: 41 WYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT 100
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---LDALI--GKRIKEFVTST 278
G V G P ++ L+ + I T
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLH---VMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157
Query: 279 TASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVVVSK 317
L +KN RK +G YK++ N +G A ++V + K
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 96.3 bits (240), Expect = 3e-24
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 12 DEPGKPTD-LEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
D+PG P + W PP +GG+ I YVVEM + + + ++
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA---PIVAKP 109
L G Y+ +V ++ G S+ P V+ P
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
Score = 81.3 bits (201), Expect = 8e-19
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS DKP P P I S ++W PP D+GG+ I YVVE E + G
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Score = 57.8 bits (140), Expect = 2e-10
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 304 GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
G KPG P P + S ++W PP D+GG I
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINK 52
Score = 35.5 bits (82), Expect = 0.008
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 226 AHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
E + ++ G Y RV ++ G
Sbjct: 70 YSGATREHLCDRLNPGCFYRLRVYCISDGGQ 100
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 98.6 bits (246), Expect = 5e-24
Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 40/203 (19%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
G KP + + A K + L I + D+ +Y++ A N G
Sbjct: 28 VTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGS 87
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ V PK + +
Sbjct: 88 VSGTASLEVEVPAKIH-------------------------------LPKTLEGM--GAV 114
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
L GE +I +PFSG+P P W D + +G + + + T + D+G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 426 SYTIQLVNTVGSDSASCKVYVVD 448
Y + N G D + ++ V D
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVAD 197
Score = 61.7 bits (150), Expect = 3e-11
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQT 411
AP +L R++ V T+ +G PKP W G E+ DG + + + +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV-----VDKPSPPQGPLDVS 460
++ D+ Y ++ N GS S + + V + P +G V
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Score = 52.8 bits (127), Expect = 3e-08
Identities = 35/161 (21%), Positives = 58/161 (36%), Gaps = 23/161 (14%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W G+ + G + +Q K L I + D Y + N G+ + +A +
Sbjct: 38 WYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Query: 230 ----------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL---DALI--GKRIKEF 274
+ G+ ++ G P I+ LI +
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS---GKPDPVITWQKGQDLIDNNGHYQVI 154
Query: 275 VTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVV 314
VT + SL N V + D+G Y + AKN +GID +E+ V
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 97.9 bits (244), Expect = 1e-23
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK--TGNWEKAVVVPAGE 69
D P P T D ++ W D SPI Y ++ +W+ A
Sbjct: 4 DVPNAPKLTGITC-QADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
S V + Y F+V A N G S + +P
Sbjct: 62 DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQP 101
Score = 88.6 bits (220), Expect = 2e-20
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGN--WEKAVVVPAGET 70
P ++ + +++ + WTP P + +P Y V K WE + +
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQN 164
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ + Y +V A+N G +
Sbjct: 165 NIVIADQPTFVKYLIKVVAINDRGESNVAAEE 196
Score = 57.4 bits (139), Expect = 1e-09
Identities = 31/181 (17%), Positives = 49/181 (27%), Gaps = 43/181 (23%)
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
+V P P T + + W+ D +PI
Sbjct: 1 IVQDVPNAPKLTG--ITCQADKAEIHWEQQ-GDNRSPILH-------------------- 37
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+TI S P W ++V Y + +
Sbjct: 38 YTIQFNTSFTPAS---WDAAYEKVPNTDSSFVVQMSPWANYT------------FRVIAF 82
Query: 433 NTVG-SD-SASCKVYVVDKPSPPQGPLDVS--DITPESCSLSWKP-PLDDGGSPITNYVV 487
N +G S SA P + P +V P + +SW P P + +P +Y V
Sbjct: 83 NKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYV 142
Query: 488 E 488
Sbjct: 143 S 143
Score = 54.7 bits (132), Expect = 9e-09
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
V D P+ P+ + + W+ D SPI +Y ++
Sbjct: 2 VQDVPNAPKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQF 42
Score = 35.5 bits (82), Expect = 0.019
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 297 IEAKNDYGI-DMADIEVVVVSKPGPPTGP---IDYTTVTPESVSMSWKP-PVDDGGTPIT 351
+ A N G + ++P P + P ++ +SW P P + P
Sbjct: 79 VIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNF 138
Query: 352 G 352
Sbjct: 139 H 139
Score = 28.1 bits (63), Expect = 4.9
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
+ Y +V A+N G
Sbjct: 161 WRQNNIVIADQPTFVKYLIKVVAINDRGE 189
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 94.0 bits (234), Expect = 2e-23
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
PG+PT + + + LQW PP G + GY ++ + +
Sbjct: 6 SGPGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQH 63
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TV GL +G TY F++ A N AG GE +
Sbjct: 64 FTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT 97
Score = 50.5 bits (121), Expect = 4e-08
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P + +S + L W PP + G + Y ++ +
Sbjct: 6 SGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEA 50
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PG PT + +T + + W PP + G + G
Sbjct: 8 PGRPT--MMISTTAMNTALLQWHPPKELPG-ELLG 39
Score = 34.3 bits (79), Expect = 0.017
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
T FT +H+G Y +R++A N AG
Sbjct: 54 TIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAG 86
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 97.2 bits (242), Expect = 2e-23
Identities = 37/227 (16%), Positives = 76/227 (33%), Gaps = 30/227 (13%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTA 280
++ T+ + EG ++ + E K++ + R+K VT
Sbjct: 6 LSATDLKIQSTAEG----IQLYSFVTYYVEDLKVNWSHNGSAIRY--SDRVKTGVTGEQI 59
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
L I D G Y +E + +++ + ++ + +++ +
Sbjct: 60 WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQA---YDEAYAEFQRLKQAAIAEKNR 116
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
V + G P +T+ G+ +T G P P W N ++
Sbjct: 117 ARV------LGGLP--------DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD 162
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ +T Y + DSG Y + + N GS+++ V V
Sbjct: 163 HCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 60.7 bits (147), Expect = 1e-10
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 37/176 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
WS NG + R T + L I + +D G Y + L + + ++G +
Sbjct: 37 WSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY 96
Query: 234 TDNNVHEGKAYEYRVSAVN-------------------------AAGTEKPKIS--LDAL 266
+ + + ++ N G P++S +
Sbjct: 97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-- 154
Query: 267 IGKRIKE-------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
K + + F TA I DSG Y + KN YG + +D V V
Sbjct: 155 -EKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 51.4 bits (123), Expect = 1e-07
Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 11/112 (9%)
Query: 364 DMTVLAGEEFTI----------TVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
L+ + I + W+ NG + R+K + Q
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ D G Y ++L + + + +
Sbjct: 62 QINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA 112
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 93.6 bits (233), Expect = 5e-23
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNWEK 61
+L + D PG P + + V L W PP + G I Y + + T N
Sbjct: 18 PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTAT 76
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
V+ T GL Y F++ A G GEA++ K
Sbjct: 77 VEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKR 124
Score = 43.9 bits (104), Expect = 1e-05
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 432 VNTVGSDSASCKVYVV----DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
+G S S + D P PP G + ++ S L W+PP G I Y +
Sbjct: 6 SGRIGDGSPSHPPILERTLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQI 63
Query: 488 E 488
Sbjct: 64 T 64
Score = 35.5 bits (82), Expect = 0.011
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGPP G I + V SV + W+PP G I
Sbjct: 28 PGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILA 60
Score = 27.0 bits (60), Expect = 8.3
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
+ L + ++T + Y +R++A G
Sbjct: 64 THRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKG 109
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 92.3 bits (229), Expect = 8e-23
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPA 67
+ P L A + V L W PP + GYV+E + + WE V
Sbjct: 3 SGSSGLSPPRGLVAVRTPRG-VLLHWDPP-ELVPKRLDGYVLEGRQGSQGWEVLDPAVAG 60
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
ET VPGLI+ Y+F++ A + + S +
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLS 103
Score = 46.1 bits (109), Expect = 1e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 449 KPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
S P V+ TP L W PP + + YV+E
Sbjct: 3 SGSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEG 44
Score = 36.8 bits (85), Expect = 0.002
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T TE + + YE+R+ A + P
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDP 91
Score = 35.7 bits (82), Expect = 0.006
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 316 SKPGPPTGP--IDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P TP V + W PP + + G
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDG 39
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 92.5 bits (230), Expect = 9e-23
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGET 70
P P D+ V L W PP ++ I + V + N E+A+ G
Sbjct: 16 VLPSAPRDVVPVLVSSRFVRLSWRPP-AEAKGNIQTFTVFFSREGDNRERALNTTQPGSL 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
TV L Y F+V A N GPGE+S+P
Sbjct: 75 QLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
Score = 47.0 bits (112), Expect = 7e-07
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDV--SDITPESCSLSWKPPLDDGGSPITNYVVEKYESA 493
GS +S K + P P DV ++ LSW+PP + G I + V
Sbjct: 1 GSSGSSGKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREG 59
Query: 494 T 494
Sbjct: 60 D 60
Score = 37.0 bits (86), Expect = 0.002
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 311 EVVVVSKPGPPTGPID--YTTVTPESVSMSWKPPVDDGGTPITG 352
+ + S P+ P D V+ V +SW+PP + G I
Sbjct: 8 KPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQT 50
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
A + + T N+ Y +RV A N G
Sbjct: 64 RALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWG 98
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 92.3 bits (229), Expect = 1e-22
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD--KTGNWEKA--------- 62
PT T + V L+W P + G PI + V+ + K NW+
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 63 --VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+ +V L TY+F++ AV + + S +A +P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110
Score = 49.9 bits (119), Expect = 7e-08
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVS 497
PP P +V+ ++ ES L W P + G PI + V+ +
Sbjct: 3 TYPP-TPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKN 48
Score = 39.1 bits (91), Expect = 5e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PPT P T ++ ESV + W P + G PI
Sbjct: 3 TYPPTPPN-VTRLSDESVMLRWMVP-RNDGLPIVI 35
Score = 33.4 bits (76), Expect = 0.048
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
S + ++ Y +R+ AV + K
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 90.8 bits (226), Expect = 1e-22
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
PKI + R + + AG + V F G P PT WTV + + + + T
Sbjct: 2 KPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
SAKRA DSG+Y +++ N +G D A +V V
Sbjct: 60 IFFPSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 55.8 bits (135), Expect = 3e-10
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 27/118 (22%)
Query: 112 LAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLN 171
L P+I + +KIKAG + + +V + +P +P
Sbjct: 1 LKPKI-LTASRKIKIKAGFTHNLEVD------FIGAP------------------DPTAT 35
Query: 172 HGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W++ + V S T + P R+D+G+Y L ++N LG A V
Sbjct: 36 --WTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 49.6 bits (119), Expect = 5e-08
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 251 VNAAGTEKPKIS-----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
V+ G P + A + + S+T S+ ++ R DSG YK++ KN+ G
Sbjct: 24 VDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGE 83
Query: 306 DMADIEVVV 314
D A EV+V
Sbjct: 84 DEAIFEVIV 92
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 91.7 bits (228), Expect = 2e-22
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 348 TPITGAPKITSDLSIRD-MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
I PKI +R GE+ + VPF G+P+P +WT G + R+ T
Sbjct: 16 REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-RVHVRT 74
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
S+ T++ + A R+ DSG Y + + D+A+ ++ VV+K
Sbjct: 75 SDFDTVFFVRQAARS-DSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 60.1 bits (146), Expect = 2e-11
Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 29/138 (21%)
Query: 94 GPGEASKPTAPIVAKPKNLAPRI--DRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRA 151
G + P+ + P+I R K G+ + V
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVP-------------F 48
Query: 152 LGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHY 211
G +P W+ G R V+T+ +TV + +RSD+G Y
Sbjct: 49 QG-------------KPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEY 94
Query: 212 SLTLENNLGTATASAHVT 229
L+++ TA+ +
Sbjct: 95 ELSVQIENMKDTATIRIR 112
Score = 58.6 bits (142), Expect = 7e-11
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 251 VNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
V G +P++ L R+ + ++ + R DSG Y++ + + D
Sbjct: 46 VPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKD 105
Query: 307 MADIEVVVVSKPG 319
A I + VV K G
Sbjct: 106 TATIRIRVVEKAG 118
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 91.4 bits (227), Expect = 2e-22
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 8 KNPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP 66
+ P P LE + L W P P GY++E+ D + V
Sbjct: 4 GSSGPVPATPILQLEECCTHNNSATLSWKQP-PLSTVPADGYILELDD-GNGGQFREVYV 61
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPIVA 107
ET CTV GL TY +V+A N G SK T+
Sbjct: 62 GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 52.1 bits (125), Expect = 1e-08
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P+ P L+ S +LSWK P P Y++E + G
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLS-TVPADGYILELDDGNGG 54
Score = 39.4 bits (92), Expect = 3e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P ++ S ++SWK P P G
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTV-PADG 43
Score = 34.4 bits (79), Expect = 0.016
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 201 PFCSRSDTGHYSLTL-ENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
P S Y L L + N G T T + +H Y RV A N G
Sbjct: 34 PPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGV 90
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 97.7 bits (243), Expect = 1e-21
Identities = 65/333 (19%), Positives = 110/333 (33%), Gaps = 79/333 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +G+ SE+VL I + D G Y + N+ +A ASA +
Sbjct: 377 WMKDGK----------AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGR 426
Query: 230 ------GTEFTDNNVHEGKAYEYRVS-AVNAAGTEKPKIS-------LDALIGKRIKEFV 275
F + + G V A G P+IS + ++ ++V
Sbjct: 427 FDPPVIRQAFQEETMEPGP----SVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYV 482
Query: 276 T---STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
T + LNI + D G+YK AK+ G+ ++ V
Sbjct: 483 TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV------------------ 524
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
G P I + ++AGE +T P +G P + +W +
Sbjct: 525 ------------------YGLPYIRQ---MEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVDKPS 451
+ + + K + I ++ +R +D +YT N G S S +V V+ P
Sbjct: 564 NRALPINRKQKVFPNGTLII---ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 452 -PPQGPLDVSDITPESCSLSWKPPLDDGGSPIT 483
P + + +L P D I
Sbjct: 621 IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID 653
Score = 94.2 bits (234), Expect = 2e-20
Identities = 51/296 (17%), Positives = 90/296 (30%), Gaps = 68/296 (22%)
Query: 174 WSINGQVCQIGGR--ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
W + + + + L I D+G Y + N++G + +T T
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 232 EF-------TDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
V G+ + G +S D GK I + + L
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQY---TGNPIKTVSWMKD---GKAI----GHSESVL 391
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
I++ ++D G+Y+ +ND A E+ + + PP
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV-------------------- 431
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
I A + + T+ G + G P P W ++G +++ + R
Sbjct: 432 -------IRQAFQ--------EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRY 476
Query: 403 KFETSENQTIYRNKSAK--------RATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ Q + N A D G Y + VG S K+ V P
Sbjct: 477 QV----GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
Score = 81.9 bits (202), Expect = 1e-16
Identities = 71/447 (15%), Positives = 116/447 (25%), Gaps = 99/447 (22%)
Query: 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144
+Q N EAS A + + P I R + ++ G S
Sbjct: 404 YQCFVRNDRESAEAS---AELKLGGRFDPPVI-RQAFQEETMEPGPSVFLKCV------- 452
Query: 145 TKSPLRALGVRAN--STKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPF 202
N W + N+ GQ + G + L+I
Sbjct: 453 ---------AGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG-------DVVSYLNITS 496
Query: 203 CSRSDTGHYSLTLENNLGTATASAHVT------GTEFTDNNVHEGKAYEYRVSAVNAAGT 256
+D G Y ++ +G A SA + + + G+ AG
Sbjct: 497 VHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV---AGY 553
Query: 257 EKPKIS--LDALIGKRIKE---FVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGID-MAD 309
I D + + +L I+N R D Y AKN G
Sbjct: 554 PIDSIVWERD---NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGS 610
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+EV V+ P +
Sbjct: 611 LEVQVMVLPRIIPFAF-------------------------------------EEGPAQV 633
Query: 370 GEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFE-TSENQTIYRNKSAKRATDSGSY 427
G+ T+ G P I WT++G +S D I ++ ++ + + +G++
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNF 692
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPES----CSLSWKPPLD-----DG 478
T N G + + V P P D + C P
Sbjct: 693 TCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAV 752
Query: 479 GSPITNYVVEKYESATGVSD--LFISK 503
G Y K V + L +
Sbjct: 753 GDTPGEYKDLKKSDNIRVEEGTLHVDN 779
Score = 73.4 bits (180), Expect = 6e-14
Identities = 50/406 (12%), Positives = 91/406 (22%), Gaps = 93/406 (22%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFD--VKEFRE 141
F A+ A G S+ A P + N + +
Sbjct: 13 LFAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM 68
Query: 142 LSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIP 201
W++ +G ++ S+ L P
Sbjct: 69 PEII----------------WIRSDGTA-------------VGDVPGLRQISSDGKLVFP 99
Query: 202 FCSRSDT------GHYSLTLENNLGTA-TASAHVTG-------TEFTDNNVHEGKAYEYR 247
D Y+ N G+ + HV + +V G + +
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 159
Query: 248 VSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDS-GIYKIEA 299
+ +S + +++ + L+I+ +D Y+
Sbjct: 160 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 300 KNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359
K+ + P PK+ S
Sbjct: 220 KHRLTGETRLSATKGRLVITEPISSA---------------------------VPKVVSL 252
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-----TIYR 414
T + P G P P W + + + Q I
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
DSG Y + N+VG +S + V S P +
Sbjct: 313 ----AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
Score = 71.9 bits (176), Expect = 2e-13
Identities = 49/305 (16%), Positives = 81/305 (26%), Gaps = 73/305 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSR-SDTGHYSLTLENNLG-TATASAHVT-- 229
W + + I + Q L I R SD Y+ +N G +A S V
Sbjct: 560 WERDNRALPINRK---QKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPK----------ISLDALIGKRIKE 273
F + G+ S G + P IS D I
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVP---GGDLPLNIDWTLDGQAISEDLGITTS--- 670
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
V + L I+ +G + A+N G + V P P
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEP--------- 721
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
D G + + G PKP W
Sbjct: 722 -----------------------------TDKAFAQGSDAKVECKADGFPKPQVTWKKAV 752
Query: 394 DEVSPDGRIKFETSENQTIYRN----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ + + + S+N + + + T+ G Y + +N +GS ++ + V
Sbjct: 753 GDTPGEYK-DLKKSDNIRVEEGTLHVDNI-QKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Query: 450 PSPPQ 454
Sbjct: 811 HHHHH 815
Score = 66.5 bits (162), Expect = 1e-11
Identities = 37/210 (17%), Positives = 61/210 (29%), Gaps = 58/210 (27%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
A G P + + V + +L IK++V +DSG Y N G
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + + V T D
Sbjct: 332 ESVETVLTV------------------------------------TAPLSAKIDP--PTQ 353
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDS 424
TV G T ++G P T W +G + + ++ +S K+ D
Sbjct: 354 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI-----------ESVKKE-DK 401
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
G Y + N S AS ++ + + PP
Sbjct: 402 GMYQCFVRNDRESAEASAELKLGGRFDPPV 431
Score = 54.9 bits (132), Expect = 5e-08
Identities = 25/184 (13%), Positives = 40/184 (21%), Gaps = 40/184 (21%)
Query: 282 LNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKP 341
+N+ N K ++ A G + GP P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGP------VFLKEPTN------- 47
Query: 342 PVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR 401
+ I SG P P IW + D
Sbjct: 48 ----------------------RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP 85
Query: 402 IKFETSENQTIY----RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
+ S + + R + ++ + Y N GS S V V
Sbjct: 86 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 145
Query: 457 LDVS 460
Sbjct: 146 NKEH 149
Score = 52.2 bits (125), Expect = 3e-07
Identities = 39/298 (13%), Positives = 74/298 (24%), Gaps = 70/298 (23%)
Query: 198 LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-----FTDN-----NVHEGKAYEYR 247
+++P ++ G+ T +A+ + F + E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 248 VSAVNAAGTEKPKIS---LD-ALIGKRIKEFVTSTTASLNIKN------SVRKDSGIYKI 297
A+G P+I D +G S+ L + +Y
Sbjct: 61 CK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYAC 117
Query: 298 EAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356
A+N +G ++ D+ V V + S + P
Sbjct: 118 LARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIP-------------- 163
Query: 357 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV-----SPDGRIKFETSENQT 411
F W + +E DG+ S
Sbjct: 164 ---------------------SFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 202
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSD---SASCKVYVVDKPSPPQGPLDVSDITPES 466
I + SY + + + + SA+ V+ +P P VS +
Sbjct: 203 I---REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDM 257
Score = 29.1 bits (65), Expect = 4.1
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP--QGPLDVSDITPES-----CSLSWK 472
R + + GS + + D+ P + P + D + + C S
Sbjct: 7 RLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGN 66
Query: 473 PPLD-----DGGSPITNYVVEKYESATGVSDLFIS 502
P + G+ + + + S+ G L
Sbjct: 67 PMPEIIWIRSDGTAVGDVPGLRQISSDGK--LVFP 99
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 93.7 bits (233), Expect = 1e-21
Identities = 51/298 (17%), Positives = 89/298 (29%), Gaps = 62/298 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT--- 229
++ G+ R VQ + L I + D G Y + G A+ +
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 97
Query: 230 ----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTST 278
+ +G+ E + + P +S + + R
Sbjct: 98 KLTFREVVSPQEFKQGEDAEVVCRV---SSSPAPAVSWLYHNEEVTTISDNRFA---MLA 151
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDY-GIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+L I N + D GIY+ E + + G +V+V+ P
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP------------------- 192
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
P I+ + T GEE T + SG P+P W NG +
Sbjct: 193 ----------------PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236
Query: 398 PDGRIKFETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ + + S + T+ +D G Y + N G D + V +
Sbjct: 237 ENEKYILKGSNTELTVRN----IINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
Score = 62.5 bits (152), Expect = 5e-11
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPID 326
+R+ + L I N+ +D+GIY+ +A + G A + + + K
Sbjct: 48 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL-------- 99
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
+++ + GE+ + S P P
Sbjct: 100 -----------TFREV-------------------VSPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKVY 445
W + +EV+ +F N + K +D G Y V G +
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINK--SDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 446 VVDKPSPPQGPLDVSDIT 463
+V+ P P + T
Sbjct: 188 IVNVPPAISMPQKSFNAT 205
Score = 57.5 bits (139), Expect = 3e-09
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
++T LS + + GE T G P+ + G+++ R+ + +
Sbjct: 2 MALLQVTISLS--KVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVR 59
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDV 459
+ +A D+G Y Q + G A+ + + K + +
Sbjct: 60 SRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ 108
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 97.5 bits (242), Expect = 2e-21
Identities = 50/411 (12%), Positives = 105/411 (25%), Gaps = 83/411 (20%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVK------ 137
+ V N + S + +V P + + S ++ + G + +
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ--YGTTQTLTCTVYAIPP 452
Query: 138 --EFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSE 195
+ +A S E + ++ + + K++
Sbjct: 453 PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512
Query: 196 TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT------GTEFTDNNVHEGKAYEYRVS 249
TV + + + + Y N +G T D E ++ +
Sbjct: 513 TVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCT 572
Query: 250 AVNAAGTEKPKIS-------------------------LDALIGKRIKEFVTSTTASLNI 284
A + ++ + + T+ + +
Sbjct: 573 AD---RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMEL 629
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
KN+ +D G Y A++ + +
Sbjct: 630 KNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA----------------------- 666
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
P IT +L + T GE ++ SG P P +W + + + D I
Sbjct: 667 ---------PTITGNLE--NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 715
Query: 405 ETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ TI R + D G YT Q + +G +
Sbjct: 716 KDGNRNLTIRRVRKE----DEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762
Score = 86.3 bits (213), Expect = 6e-18
Identities = 59/400 (14%), Positives = 98/400 (24%), Gaps = 93/400 (23%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
++ + + +A D+ + + ++
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVI--------- 148
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
P N + + F+ G I + S+ IP
Sbjct: 149 ----PCLGSISNLNVSLCARYPEKRFVPDGNRI--------------SWDSKKGFTIPSY 190
Query: 204 SRSDTGHYSLTLENNLGTATASAHVT---GTEFTDNNVHEGKAYEYRV--SAV---NAAG 255
S G + N + + ++ G D + E V V A
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 256 TEKPKISL-----------DALIGKRIKEFVTST----TASLNIKNSVRKDSGIYKIEAK 300
I L+ + +K S ++L I R D G+Y A
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Query: 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDL 360
+ V V KP G
Sbjct: 311 SGLMTKKNSTFVRVHEKPFVAFGS---------------GME------------------ 337
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
+ GE I + G P P W NG + + IK TI
Sbjct: 338 --SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVL--TIMEV----S 389
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
D+G+YT+ L N + + S V +V P G +
Sbjct: 390 ERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
Score = 84.4 bits (208), Expect = 2e-17
Identities = 46/404 (11%), Positives = 86/404 (21%), Gaps = 99/404 (24%)
Query: 85 FQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSY 144
+ AA G S PR+ + + IKA + +
Sbjct: 12 WLCVETRAASVGLPSVSLDL---------PRL-SIQKDILTIKANTTLQITCR------- 54
Query: 145 TKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSET---VLDIP 201
+ L+ W R +V L IP
Sbjct: 55 ---------------------GQRDLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIP 91
Query: 202 FCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV---------N 252
+DTG Y + +V + ++
Sbjct: 92 KVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL 151
Query: 253 AAGTEKPKISLDALIGKRI----KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA 308
+ + KR + I + + +G+ EAK + +
Sbjct: 152 GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 211
Query: 309 DIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVL 368
+ +VVV + +P + +
Sbjct: 212 IMYIVVVVGYRIY---------------------------DVVLSPS-------HGIELS 237
Query: 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT------ 422
GE+ + + + +T
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 423 ---DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
D G YT + + + S V V +KP G S +
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Score = 78.3 bits (192), Expect = 2e-15
Identities = 50/387 (12%), Positives = 99/387 (25%), Gaps = 40/387 (10%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
A ++ IV + S + +++ G+ +
Sbjct: 197 MVFCEAKINDESYQS---IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT------ 247
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
A N + + + + + ++++ S L I
Sbjct: 248 -------ART-ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS--TLTIDGV 297
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSA-------VNAAGT 256
+RSD G Y+ + L T S V E G + G
Sbjct: 298 TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGY 357
Query: 257 EKPKIS--LDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIE 311
P+I + G ++ L I +D+G Y + N + +
Sbjct: 358 PPPEIKWYKN---GIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVS 414
Query: 312 VVVVSKPGPPTGPIDYTTVT-PESVSMSWKPPVDDGGTPITGAPKIT-SDLSIRDMTVLA 369
+VV P + + + + V P I +
Sbjct: 415 LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHH----IHWYWQLEEECANEP 470
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
+ ++T P+ + G+++ + + A S Y
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530
Query: 430 QLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ VN VG +V P P
Sbjct: 531 EAVNKVGRGERVISFHVTRGPEITLQP 557
Score = 64.8 bits (157), Expect = 3e-11
Identities = 40/333 (12%), Positives = 64/333 (19%), Gaps = 107/333 (32%)
Query: 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------------------- 229
T K+ VL I S DTG+Y++ L N + S V+
Sbjct: 375 HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 230 ----------------------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI 261
E + + +
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 262 SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + + S +YK EA N G I V P
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554
Query: 322 TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSG 381
P DM E ++
Sbjct: 555 LQP---------------------------------------DMQPTEQESVSLWCTADR 575
Query: 382 RPKPTPIWTVNGDEVSPDGR----------IKFETSENQTIYRNKSAKRAT--------- 422
W G + P + N T++ N +
Sbjct: 576 STFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQ 635
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV-VDKPSPPQ 454
D G Y + + V + P
Sbjct: 636 DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
Score = 62.9 bits (152), Expect = 1e-10
Identities = 19/254 (7%), Positives = 46/254 (18%), Gaps = 40/254 (15%)
Query: 206 SDTGHYSLTLENNLGTATASAHVTGTEFT----DNNVHEGKAYEYRVSAVNAAGTEKPKI 261
+ S + + + + P
Sbjct: 7 LAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNN 66
Query: 262 SLDALIGKRIKEFVT-STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ + E +L I + D+G YK + + + V P
Sbjct: 67 QSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFI 126
Query: 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380
+ + V +T + I S
Sbjct: 127 ASVSDQHGVV---------------------------------YITENKNKTVVIPCLGS 153
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
+ ++ + + + +G + S +
Sbjct: 154 ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY--MISYAGMVFCEAKINDESYQS 211
Query: 441 SCKVYVVDKPSPPQ 454
+ VV
Sbjct: 212 IMYIVVVVGYRIYD 225
Score = 54.4 bits (130), Expect = 7e-08
Identities = 15/183 (8%), Positives = 42/183 (22%), Gaps = 49/183 (26%)
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
+++ V ++ + + + + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL----------------------------- 31
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
P+++ +T+ A IT R + W ++ + R++
Sbjct: 32 ----------PRLSIQKD--ILTIKANTTLQITC----RGQRDLDWLWPNNQSGSEQRVE 75
Query: 404 FETSENQTIYRN---KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + D+G+Y T + V P
Sbjct: 76 VTECSDGLFCKTLTIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHG 134
Query: 461 DIT 463
+
Sbjct: 135 VVY 137
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 92.4 bits (229), Expect = 6e-21
Identities = 37/301 (12%), Positives = 82/301 (27%), Gaps = 54/301 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG--- 230
WS + + R +V++ ++T + D G YS + + G A++
Sbjct: 36 WSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95
Query: 231 ----------------TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALI 267
+ E + R + K++ +
Sbjct: 96 RLLALSHEHKFPTVPVKSELAVEILEKG--QVRFWMQAEKLSGNAKVNYIFNEKEIFEGP 153
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ + + ++ +D G Y + ++ + + + +V
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQK----- 208
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+ P L V + + K T
Sbjct: 209 ------------EAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETH 253
Query: 388 I-WTVNGDEVSPDGRIKFETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
I W + E+S D + F+ I + D+G Y + L + G D + K+
Sbjct: 254 IVWYKDEREISVDEKHDFKDGICTLLI---TEFSKK-DAGIYEVILKDDRGKDKSRLKLV 309
Query: 446 V 446
Sbjct: 310 D 310
Score = 68.5 bits (167), Expect = 6e-13
Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 28/212 (13%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
R++ + K+ D GIY + + GI + + K
Sbjct: 46 SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV-PFSGRPKPT 386
P + + +L + +
Sbjct: 106 FPTVPVKSEL--------------------------AVEILEKGQVRFWMQAEKLSGNAK 139
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVY 445
+ N E+ + K N I K + D G+YT QL + ++ ++ +
Sbjct: 140 VNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV 199
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDD 477
+ + L
Sbjct: 200 GDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 93.4 bits (232), Expect = 3e-20
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGET 70
EP P + + V L W PP DGGS +T Y +E ++ G W T
Sbjct: 8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR--YT 65
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI-VAKPKNLAPRIDRSTLNDVKIKAG 129
T+ GL G+ Y+F++ A N G + +PTAP+ + + R ++
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGK 125
Query: 130 QSFSFDVKEFRELSYTKSPLRALGVRANS 158
+ S + + + + + + ++ +
Sbjct: 126 GTVSSNYDNYVFDIWKQYYPQPVEIKHDH 154
Score = 72.2 bits (177), Expect = 1e-13
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
V V +P PP+ P+ + +I E+ LSWKPP DGGS +TNY +EK E+
Sbjct: 3 MVADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREA 51
Score = 53.3 bits (128), Expect = 1e-07
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 3/86 (3%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-TIYRNKSAKR 420
V G+ P W + E+ + + N + N+ +
Sbjct: 489 PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV--K 546
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYV 446
D G YT++ N+ G+ + V
Sbjct: 547 GDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 49.1 bits (117), Expect = 2e-06
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
V V +P PP PI + E+V +SWKPP DGG+ +T
Sbjct: 4 VADVPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTN 43
Score = 41.0 bits (96), Expect = 0.001
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ + L I D G Y + AKN YG + + V
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 32.5 bits (74), Expect = 0.39
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W + + + + + ++ L I D G Y++ +N+ GT +
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 226 AHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
A T T + GK YE+R+ A N G KP
Sbjct: 60 AKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKP 93
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 85.1 bits (211), Expect = 4e-20
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
V + PG +L A + + W P+S G I Y + +K + E+ V
Sbjct: 8 RVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV 66
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V S T+ GL + Y F+V A N GPG ++
Sbjct: 67 DVS--SHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
Score = 47.7 bits (114), Expect = 4e-07
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 436 GSDSASCKVYV---VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S +V V P P L +P S +++W+ P+ G I NY + E
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEK 58
Query: 493 ATG 495
T
Sbjct: 59 GTD 61
Score = 35.4 bits (82), Expect = 0.008
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP + +P S++++W+ PV G I
Sbjct: 18 PGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQN 50
Score = 28.1 bits (63), Expect = 2.9
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
+Y L V+ +T N + + Y +RV A N G
Sbjct: 50 NYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHG 95
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 89.9 bits (223), Expect = 4e-20
Identities = 51/313 (16%), Positives = 91/313 (29%), Gaps = 79/313 (25%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSETVLDI-PFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W+ G+ V + VL I P + D Y +N++G T A +T
Sbjct: 40 WNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Query: 230 ------------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------LDAL 266
V + +A A+G P+I+ +
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTR------TATMLCAASGNPDPEITWFKDFLPVDPSA 153
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPI 325
RIK+ + +L I++S D G Y+ A N G + + V + P
Sbjct: 154 SNGRIKQL---RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR--- 207
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
+ P ++ G IT G P P
Sbjct: 208 ------------------------FSILPM--------SHEIMPGGNVNITCVAVGSPMP 235
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
W ++++P+ + + DS +YT ++++G A ++
Sbjct: 236 YVKWMQGAEDLTPEDDMPVGR---NVL----ELTDVKDSANYTCVAMSSLGVIEAVAQIT 288
Query: 446 VVDKPSPPQGPLD 458
V P
Sbjct: 289 VKSLPKAGTKHHH 301
Score = 69.5 bits (170), Expect = 3e-13
Identities = 42/200 (21%), Positives = 61/200 (30%), Gaps = 43/200 (21%)
Query: 269 KRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
EF S A L I+ D +Y+ A+N G ++ V+ + P+G
Sbjct: 52 FETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF--- 108
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
P I + V T+ SG P P
Sbjct: 109 --------------------------PNIDMGP--QLKVVERTRTATMLCAASGNPDPEI 140
Query: 388 IWTVNGDEVSP---DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCK 443
W + V P +GRIK S I + TD G Y N+ G S+
Sbjct: 141 TWFKDFLPVDPSASNGRIKQLRSGALQI----ESSEETDQGKYECVATNSAGVRYSSPAN 196
Query: 444 VYVVDKPSPP---QGPLDVS 460
+YV + P P+
Sbjct: 197 LYVRVQNVAPRFSILPMSHE 216
Score = 62.9 bits (153), Expect = 5e-11
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT- 411
P+ + +D ++G + +G PKP W G +V+ E E+
Sbjct: 6 PPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ R + + D Y N+VG + K+ V+ + P G
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
Score = 57.1 bits (138), Expect = 3e-09
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 19/167 (11%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT---ATASAHVTG 230
W + L I +D G Y N+ G + A+ +V
Sbjct: 142 WFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201
Query: 231 T--------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTA 280
+ + G AV G+ P + + +
Sbjct: 202 QNVAPRFSILPMSHEIMPGGNVNITCVAV---GSPMPYVKWMQG---AEDLTPEDDMPVG 255
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
++ + KDS Y A + G+ A ++ V S P T +
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 86.7 bits (215), Expect = 7e-20
Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 43/201 (21%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+G P++S + ++ + A L I + +SG Y ++A N G
Sbjct: 29 ISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ 88
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ E++V ++ PP + M
Sbjct: 89 ATSTAELLVKAETAPPN---------------------------FVQRL--------QSM 113
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
TV G + + V +G P P + +G E+ + + A DSG
Sbjct: 114 TVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPE-DSG 172
Query: 426 SYTIQLVNTVGSDSASCKVYV 446
+Y++ N+VG +++ ++ V
Sbjct: 173 TYSVNATNSVGRATSTAELLV 193
Score = 68.2 bits (167), Expect = 1e-13
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP T L + + VL G T SG P P W +G +S + S +
Sbjct: 5 APTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 413 YRNK-SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
Score = 57.8 bits (140), Expect = 6e-10
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSE--TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W +GQV VQ + S+ L IP +++++G YSL N G AT++A +
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK 98
Query: 230 --------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL---DALI--GKRIKEFVT 276
V +G +V G P + A I +
Sbjct: 99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVT---GIPTPVVKFYRDGAEIQSSLDFQISQE 155
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
SL I + +DSG Y + A N G + E++V
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 44.7 bits (106), Expect = 2e-05
Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 30/146 (20%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELS 143
++ ++A N +G +A+ TA ++ K + P L + ++ G V
Sbjct: 77 RYSLKATNGSG--QATS-TAELLVKAETAPPNF-VQRLQSMTVRQGSQVRLQV------- 125
Query: 144 YTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFC 203
R G+ K + + +G Q + L I
Sbjct: 126 ------RVTGIPTPVVK-FYR------------DGAEIQSSLDFQISQEGDLYSLLIAEA 166
Query: 204 SRSDTGHYSLTLENNLGTATASAHVT 229
D+G YS+ N++G AT++A +
Sbjct: 167 YPEDSGTYSVNATNSVGRATSTAELL 192
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 90.6 bits (224), Expect = 2e-19
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 2/99 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
S + +P + + + W+ P + Y V + K +
Sbjct: 431 SFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSY-N 488
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V S T+ L TY QV+A+ G G SK
Sbjct: 489 VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
Score = 82.5 bits (203), Expect = 6e-17
Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 42/264 (15%)
Query: 240 EGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEA 299
+G+ + AG EK + + A K + + ++++ G E
Sbjct: 255 DGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCEC 314
Query: 300 KNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSD 359
+ + D + ++P + V + W PP D GG
Sbjct: 315 EEGFFRAPQDPASMPCTRPPSAPHYLTAV-GMGAKVELRWTPPQDSGGREDIV------- 366
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS------ENQTIY 413
+++T S TS E Y
Sbjct: 367 -------------YSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNY 413
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD--VSDITPESCSLSW 471
++T++ N V S P + + S S+SW
Sbjct: 414 ------------TFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSW 461
Query: 472 KPPLDDGGSPITNYVVEKYESATG 495
P + Y V +
Sbjct: 462 SIPPPQQS-RVWKYEVTYRKKGDS 484
Score = 74.0 bits (181), Expect = 4e-14
Identities = 27/122 (22%), Positives = 32/122 (26%), Gaps = 11/122 (9%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK---------DKTGNWE 60
P P V+L+WTPP GG Y V +
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388
Query: 61 KAVVVPAG--ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDR 118
+ P G TS TV L Y F V A N S+ P R
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVR 448
Query: 119 ST 120
Sbjct: 449 LE 450
Score = 60.9 bits (147), Expect = 4e-10
Identities = 21/161 (13%), Positives = 38/161 (23%), Gaps = 21/161 (13%)
Query: 376 TVPFSGRPKPTPIWTVNGDEVSPDGRIK--------------------FETSENQTIYRN 415
V G +P V+G+ + P G+ +
Sbjct: 239 AVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLEC 298
Query: 416 KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPL 475
+ G+ + + +P L + L W PP
Sbjct: 299 PEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYL-TAVGMGAKVELRWTPPQ 357
Query: 476 DDGGSPITNYVVEKYESATGVSDLFISKSEVKTGSLMTSKT 516
D GG Y V + + ++ V+ T
Sbjct: 358 DSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLT 398
Score = 39.0 bits (90), Expect = 0.004
Identities = 15/125 (12%), Positives = 28/125 (22%), Gaps = 48/125 (38%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNS 287
+T T T +++ Y + V A N + + S+N
Sbjct: 397 LTRTSVTVSDLEPHMNYTFTVEARNGVSGLVT------------SRSFRTASVSIN---- 440
Query: 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347
P + + S+S+SW P
Sbjct: 441 ------------------------------QTEPP-KVRLEGRSTTSLSVSWSIPPPQQS 469
Query: 348 TPITG 352
+
Sbjct: 470 -RVWK 473
Score = 28.6 bits (63), Expect = 5.9
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 227 HVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
G T +++ Y +V A+ G
Sbjct: 491 RTEGFSVTLDDLAPDTTYLVQVQALTQEGQ 520
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 82.4 bits (204), Expect = 2e-19
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P + + + V L W P G I Y ++ +K + + A T
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV GL G Y FQVRA +AG G S+ KP
Sbjct: 68 ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105
Score = 37.3 bits (87), Expect = 0.002
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
PS + S SL W+ P G I Y ++ YE
Sbjct: 9 AAPSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYE 50
Score = 30.8 bits (70), Expect = 0.28
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P I SVS+ W+ P G I
Sbjct: 11 PSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILE 43
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 83.0 bits (205), Expect = 2e-19
Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 9 NPFDEPGKPT-DLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA----- 62
+ P P+ E D + + W I+ Y ++ TG
Sbjct: 11 DYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNS 67
Query: 63 -----VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
+V + TV GL G Y F V+A+N AG + ++P P
Sbjct: 68 VDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPS 125
Score = 54.5 bits (131), Expect = 2e-09
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
S S+ + + P+PP ++ + ++ ++ W I++Y ++
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTI 54
Score = 39.5 bits (92), Expect = 4e-04
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
++ P PP+ + T + +++++ W I+
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISS 47
Score = 36.4 bits (84), Expect = 0.005
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
++ +T + + G Y + V A+N AG+
Sbjct: 72 MIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS 108
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 81.7 bits (202), Expect = 5e-19
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
P + + L W P G I Y + +K N + + + +
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNT 64
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ GL G Y QVRA AG G+ S
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
Score = 35.5 bits (82), Expect = 0.007
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
PS + T S +LSW P G I +Y + YE
Sbjct: 6 SGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHN 51
Score = 30.1 bits (68), Expect = 0.45
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P + + T S+++SW P G I
Sbjct: 6 SGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILD 40
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 81.5 bits (202), Expect = 5e-19
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
PG +L+A + + W PP G P+ GY + + + E+ + V S
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD--GLSYK 64
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ GL + Y + A N GPG ++
Sbjct: 65 LEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 45.3 bits (108), Expect = 2e-06
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P P + L +P S ++W+PP G P+ Y + E +TG
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTG 51
Score = 36.1 bits (84), Expect = 0.004
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP + + +P S+ ++W+PP G P+ G
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQG 40
Score = 27.2 bits (61), Expect = 5.2
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
V G + + + Y R A N G
Sbjct: 58 VDGLSYKLEGLKKFTEYSLRFLAYNRYG 85
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 88.5 bits (219), Expect = 8e-19
Identities = 63/533 (11%), Positives = 117/533 (21%), Gaps = 159/533 (29%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W + T + ++ + T + TSCT
Sbjct: 103 PEKPKNLSCIVNEGKKMRCEWDGG-RETHLE-TNFTLKSEWATHKFADCKAKRDTPTSCT 160
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSF 132
V + + V A NA G + V K K P
Sbjct: 161 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN---------------- 204
Query: 133 SFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTT 192
L + S+ + + P + I
Sbjct: 205 ----------------LSVINSEELSSILKLTWTNPSIKSV---IILKYNIQ-------- 237
Query: 193 KSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVN 252
+ ++ + + E+ T + FT ++ Y +R+ +
Sbjct: 238 ---------YRTKDASTWSQIPPEDTASTRS--------SFTVQDLKPFTEYVFRIRCMK 280
Query: 253 AAGT----------------EKPKISLDALIGKRIKEFVTSTTASL-------------- 282
G ++P + T L
Sbjct: 281 EDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKI 340
Query: 283 ----------------------NIKNSVRKDSGIYKIEAKNDYGI-DMADIEVVVVSKPG 319
+ ++ D + + +N G D A + +
Sbjct: 341 LDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQA 400
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
+ + W P + I
Sbjct: 401 THPVMDLKAFPKDNMLWVEWTTPRESVKKYILE--------------------------- 433
Query: 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVG- 436
W V D+ + E Y + + Y I + V G
Sbjct: 434 ---------WCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC---YLITVTPVYADGP 481
Query: 437 SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK-PPLDDGGSPITNYVVE 488
S K Y+ P + + L W P+D I NY +
Sbjct: 482 GSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF 534
Score = 86.6 bits (214), Expect = 3e-18
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMKDKTGNWEKA 62
S+ P K + K+ L+W P+ I Y + + GN
Sbjct: 486 SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA- 544
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V V + T T+ L Y ++ A G + + T
Sbjct: 545 VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 85.4 bits (211), Expect = 8e-18
Identities = 53/379 (13%), Positives = 97/379 (25%), Gaps = 63/379 (16%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATD--WDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW 59
DH +P P +L + + L WT P S I Y ++ + K +
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDAST 245
Query: 60 EKAV---VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ + +S TV L Y F++R + G G S + P
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305
Query: 117 DRSTLNDVKIKAGQ-SFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWS 175
S + Q + + W L N
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLV------------------------WKTLPPFEAN--GK 339
Query: 176 INGQVCQIGGRADVQTTKSETVLDIPF--CSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
I ++ ++ TV +D +LT+ N +G + A+
Sbjct: 340 ILD--YEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPAC- 396
Query: 234 TDNNVHEGKAYEYRVSAVNAAGT-----EKPKISLDA-LIGKRIKEFVTSTTASLNIKNS 287
+ + A P+ S+ ++ + ++
Sbjct: 397 ----DFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDG 452
Query: 288 VRKDSGI---------YKIE--AKNDYGIDMADIEVVVVSKPGPPTGP--IDYTTVTPES 334
+ + Y I G + + K PP+ + V
Sbjct: 453 TVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNE 511
Query: 335 VSMSWK-PPVDDGGTPITG 352
+ W PVD I
Sbjct: 512 AVLEWDQLPVDVQNGFIRN 530
Score = 66.6 bits (162), Expect = 8e-12
Identities = 26/252 (10%), Positives = 59/252 (23%), Gaps = 48/252 (19%)
Query: 249 SAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYG 304
++ I + + + + + TAS + + I
Sbjct: 30 KCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLE 89
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++ I ++ P P + + + W +
Sbjct: 90 QNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL-ETN------------- 134
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
FT+ ++ +P ++
Sbjct: 135 --------FTLKSEWATHK----FADCKAKRDTPTSCTVDYSTVYFVNIE---------- 172
Query: 425 GSYTIQLVNTVG---SDSASCKVYVVDKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGS 480
++ N +G SD + KP+PP + S+ L+W P
Sbjct: 173 --VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSV 229
Query: 481 PITNYVVEKYES 492
I Y ++
Sbjct: 230 IILKYNIQYRTK 241
Score = 61.2 bits (148), Expect = 4e-10
Identities = 36/320 (11%), Positives = 68/320 (21%), Gaps = 29/320 (9%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269
T + V+ E V A NA G + K
Sbjct: 138 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN-IEVWVEAENALGKVTSDHINFDPVYK 196
Query: 270 RI--------KEFVTSTTASLNI--KNSVRKDSGI--YKIEAKNDYGIDMADIEVVVVSK 317
++ L + N K I Y I+ + + I +
Sbjct: 197 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAS 256
Query: 318 PGPP---TGPIDYT---------TVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+T + W G P +
Sbjct: 257 TRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEAS--GITYEDRPSKAPSFWYKID 314
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
T+ + + P + EV+ + +
Sbjct: 315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTND-RY 373
Query: 426 SYTIQLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 484
T+ + N VG SD+A + D + + + W P + I
Sbjct: 374 LATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 433
Query: 485 YVVEKYESATGVSDLFISKS 504
+ V ++ +
Sbjct: 434 WCVLSDKAPCITDWQQEDGT 453
Score = 28.4 bits (63), Expect = 6.6
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 210 HYSLTLENNLGTA-TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAG 255
+Y++ +G + + TE+T +++ Y R++A G
Sbjct: 530 NYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 83.7 bits (207), Expect = 2e-18
Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK------DKTGN 58
V + + P +P L L W P G IT Y V G
Sbjct: 90 VSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGP 148
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+K +V + L E + Y++ V+A N AG G + + +PK
Sbjct: 149 MKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPK 200
Score = 71.3 bits (175), Expect = 3e-14
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
G P + A + W PP GY V+ + + +A ++ + S
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVE 61
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ L Y+ +V A A G G S
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLV 90
Score = 43.2 bits (102), Expect = 8e-05
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 426 SYTIQLVNTVGSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 482
+ G S V + PS P L + ++ LSW P + G I
Sbjct: 72 EMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EI 129
Query: 483 TNYVVEKYESATGVSDLFISKSEVKTGSLMTSKT 516
T Y V + K +
Sbjct: 130 TAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLL 163
Score = 34.4 bits (79), Expect = 0.059
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGP--IDYTTVTPESVSMSWKPPVDDGGTPITG 352
K+ A G V + P+ P + + V+ +SW P + G IT
Sbjct: 73 MKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITA 131
Score = 31.7 bits (72), Expect = 0.45
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKS 504
PQ P + +W PP Y V+ + S+ + S
Sbjct: 6 LGAPQNP-NAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDS 55
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 79.4 bits (196), Expect = 2e-18
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
P +++ T+ + W PPI PI G +V K E V + + TS T+
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLTLT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPT 102
L TY+ ++ A N T
Sbjct: 61 NLEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
PP + V++IT + ++W+PP+ PI +V + SD
Sbjct: 3 QPPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVT-FGRKNDPSD 44
Score = 28.1 bits (63), Expect = 2.5
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T + T T N+ YE R+ A N P
Sbjct: 45 ETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPP 83
Score = 27.4 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PP I T +T + ++W+PP+ PI G
Sbjct: 4 PPFN-IKVTNITLTTAVVTWQPPI----LPIEG 31
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 78.6 bits (194), Expect = 4e-18
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
PTDL+ T+ + + WTPP + ITGY + G K + VP TS T+
Sbjct: 5 PTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVTIT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
GL G Y V A+ T
Sbjct: 61 GLTPGVEYVVSVYALKDNQESPPLVGTQ 88
Score = 37.4 bits (87), Expect = 0.001
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
P L V+++T S ++SW PP + IT Y + Y + G +
Sbjct: 3 DAPTD-LQVTNVTDTSITVSWTPP----SATITGYRIT-YTPSNGPGE 44
Score = 28.9 bits (65), Expect = 1.3
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+ T T + G Y V A+ P
Sbjct: 52 PSSTSVTITGLTPGVEYVVSVYALKDNQESPP 83
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 86.4 bits (213), Expect = 5e-18
Identities = 58/484 (11%), Positives = 113/484 (23%), Gaps = 146/484 (30%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETS 71
+ P + ++ +Q +G PI VE +G+W V TS
Sbjct: 260 EPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVD--STS 317
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQS 131
+ L Y+ V G P + + K P +++ +S
Sbjct: 318 YKIGHLDPDTEYEISVLLTRPGEGGT-GSPGPALRTRTKCADPM---RGPRKLEVVEVKS 373
Query: 132 FSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQT 191
++ W EPF + + + V
Sbjct: 374 RQITIR------------------------W----EPFGYNVTRCHSYNLTVHYCYQVGG 405
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV 251
+ + + + T N+ ++ +
Sbjct: 406 QEQVRE-----------------------EVSWDTENSHPQHTITNLSPYTNVSVKLILM 442
Query: 252 NAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311
N G ++ + + T
Sbjct: 443 NPEGRKESQE-------------LIVQTDE------------------------------ 459
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGE 371
PG + E + + W+ P G IT
Sbjct: 460 ----DLPGAVPTESIQGSTFEEKIFLQWREPTQTYG-VITL------------------- 495
Query: 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS-YTIQ 430
+ IT K + D + GR+ +E ++ G+ Y+
Sbjct: 496 -YEITY------KAVSSFDPEIDLSNQSGRVSKLGNETHFLFFG------LYPGTTYSFT 542
Query: 431 L--VNTVGSDSASCKVYVV---DKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITN 484
+ G PS P L+ + T + ++ KP G P++
Sbjct: 543 IRASTAKG-FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSV 600
Query: 485 YVVE 488
Y +
Sbjct: 601 YQIV 604
Score = 81.7 bits (201), Expect = 1e-16
Identities = 38/215 (17%), Positives = 61/215 (28%), Gaps = 36/215 (16%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
A L I + + + +A EV V+ P T
Sbjct: 123 AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHF-------------- 168
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS-- 397
L I+++ V AG+ T GR + G +V
Sbjct: 169 --------------------LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
P IK +S N D+G Y + G ++ VV +P P P
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268
Query: 458 DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
++ + + +G PI VE +
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTA 303
Score = 73.3 bits (179), Expect = 7e-14
Identities = 37/241 (15%), Positives = 71/241 (29%), Gaps = 49/241 (20%)
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
AS N+ N+ ++D+G Y+ + + G+ +++ +VV +P P P +V + +
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWI 280
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
+G PI V
Sbjct: 281 QLNANSINGDGPIVA------------------------------------REVEYCT-- 302
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV----NTVGSDSASCKVYVVDKPSPP 453
G + T Y+ T+ Y I ++ G+ S + K + P
Sbjct: 303 ASGSWNDRQPVDSTSYKIGHLDPDTE---YEISVLLTRPGEGGTGSPGPALRTRTKCADP 359
Query: 454 QGP---LDVSDITPESCSLSWKPPLDDGGS-PITNYVVEKYESATGVSDLFISKSEVKTG 509
L+V ++ ++ W+P + N V G + S
Sbjct: 360 MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTEN 419
Query: 510 S 510
S
Sbjct: 420 S 420
Score = 70.2 bits (171), Expect = 8e-13
Identities = 51/276 (18%), Positives = 82/276 (29%), Gaps = 58/276 (21%)
Query: 4 SVLIKNPFDEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK--------D 54
++++ D PG PT+ ++ + LQW P G IT Y + K
Sbjct: 452 ELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEI 510
Query: 55 KTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
N V ET GL G TY F +RA A G G +
Sbjct: 511 DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF----------- 559
Query: 115 RIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLS-EPFLNHG 173
+T P L N T V + +P + G
Sbjct: 560 ----TTKISA--------------------PSMPAYELETPLNQTDNTVTVMLKPAHSRG 595
Query: 174 WSING---QVCQIGGRADVQTTKSETVLDIPFCSRSDTG---HYSLTLENNLGTATASAH 227
++ V + R +TT+ +P ++ + Y E + A+
Sbjct: 596 APVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQP 655
Query: 228 VT------GTEFTDNNVHEGKAYEYRVSAVNAAGTE 257
T + + + K+Y A + A E
Sbjct: 656 FTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGE 691
Score = 63.3 bits (153), Expect = 1e-10
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 11/112 (9%)
Query: 4 SVLIKNPFDEPGK-PTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTG---- 57
++ + +P + P LE + + ++W P + V + G
Sbjct: 349 ALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQ 408
Query: 58 -NWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
E + T+ L ++ +N G + ++ +
Sbjct: 409 VREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK----ESQELIVQ 456
Score = 58.3 bits (140), Expect = 4e-09
Identities = 36/371 (9%), Positives = 96/371 (25%), Gaps = 56/371 (15%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETV---LDIPFCSRSDTGHYSLTLENNLGTAT 223
+ G + +++ T S ++ ++ D G Y + G
Sbjct: 191 RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI 250
Query: 224 ASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRI---------KEF 274
++ + + + + + ++ + + +
Sbjct: 251 SNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDR 310
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD--IEVVVVSKPGPPTGP---IDYTT 329
+ S I + + + +K P ++
Sbjct: 311 QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE 370
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
V +++ W+P + + +TV + +
Sbjct: 371 VKSRQITIRWEPFGYNVT---------------------RCHSYNLTVHYCYQVGGQEQV 409
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVG-SDSASCKVYV 446
+ ++T + + + T+ +++L +N G +S V
Sbjct: 410 RE---------EVSWDTENSHPQHTITNLSPYTN---VSVKLILMNPEGRKESQELIVQT 457
Query: 447 V-DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSE 505
D P E L W+ P G IT Y + Y++ + ++
Sbjct: 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEIT-YKAVSSFDPEIDLSNQ 515
Query: 506 VKTGSLMTSKT 516
S + ++T
Sbjct: 516 SGRVSKLGNET 526
Score = 41.7 bits (97), Expect = 6e-04
Identities = 19/171 (11%), Positives = 41/171 (23%), Gaps = 45/171 (26%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDK--DHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ P P T ++ + V + P G+P++ Y + ++++ K
Sbjct: 556 TNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEERPRRTK 614
Query: 62 ---------------------------AVVVPAGE---------------TSCTVPGLIE 79
A PA L+
Sbjct: 615 KTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLP 674
Query: 80 GETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQ 130
++Y+ +A + A P + D +K +
Sbjct: 675 YKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTK 725
Score = 37.1 bits (85), Expect = 0.013
Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 13/173 (7%)
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGP----IDYTTVTPESVSMSWKPPVDDGGTPIT 351
I A G +K P+ P T +V++ KP G P++
Sbjct: 542 TIRASTAKG-FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVS 599
Query: 352 G----APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407
+ + + +L I + + S F
Sbjct: 600 VYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIG 659
Query: 408 ENQTI--YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
+N+T Y N S Q + ++ V V K + P+
Sbjct: 660 DNKTYNGYWNTPLLPYK-SYRIYFQAASRANGETKIDCVQVATKGAATPKPVP 711
Score = 33.2 bits (75), Expect = 0.23
Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 2/109 (1%)
Query: 369 AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT 428
+ V + P PIW ++GD R + S + + T
Sbjct: 90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGY 149
Query: 429 IQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDD 477
+ + + + + ++ CS + D
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRIQNVE--VNAGQFATFQCSAIGRTVAGD 196
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 78.3 bits (193), Expect = 8e-18
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV-VVPAGET 70
P +D+ T + L W P + G + Y V+ +K +V + E
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSEN 64
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ GL G +Y QVRA + AG G +
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
P + V+ +P S SL+W P G + +Y V+ +E
Sbjct: 6 SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHE 47
Score = 31.3 bits (71), Expect = 0.22
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P + I T +P S+S++W P G +
Sbjct: 6 SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLD 40
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 78.2 bits (193), Expect = 8e-18
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKA 62
L++ D PG L ++ + + W P G +TGY + + N
Sbjct: 8 PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVT 66
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+P V GL TY +V A+ + G G+ S T
Sbjct: 67 HYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 37.4 bits (87), Expect = 0.002
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
D P P L S+I S +SW+ P + G +T Y +
Sbjct: 16 DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRIS 54
Score = 30.5 bits (69), Expect = 0.42
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PGP + ++ + S+ +SW+ P + G +TG
Sbjct: 18 PGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTG 50
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 84.1 bits (208), Expect = 1e-17
Identities = 54/295 (18%), Positives = 79/295 (26%), Gaps = 68/295 (23%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATA-SAHVT--- 229
W N Q L I D+G Y + N T T A V
Sbjct: 155 WQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILS 214
Query: 230 ----------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS---LDALIGKRIKE 273
++ EGK AV +G P + + +I R K+
Sbjct: 215 DPGLHRQLYFLQRPSNVIAIEGK------DAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ ++L I N DSG Y A E+ V+
Sbjct: 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV----------------- 311
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
P + ++ + SG+P PT W NG
Sbjct: 312 -------------------PPWFLN--HPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
D V P + N I +D G Y N G+ +S ++ V
Sbjct: 351 DVVIPSDYFQIVGGSNLRI----LGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 75.6 bits (186), Expect = 6e-15
Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 67/311 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV----LDIPFCSRSDTGHYSLTLENNLGTATAS--AH 227
W +G + +G Q + ++ + + D G Y + S A
Sbjct: 56 WKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 228 VT-------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGKR 270
V ++ G + + G P I L+ + G
Sbjct: 116 VMVAGPLRFLSQTESITAFMGD------TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVSKPGPPTGPIDYTT 329
V + +L I DSG+Y+ A+N + EV ++S PG
Sbjct: 170 R--VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY---- 223
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
P ++ + G++ + SG P P+ W
Sbjct: 224 --------------------FLQRPS--------NVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ + + K+ + + DSG+YT + + SAS ++ V+
Sbjct: 256 LRGEEVIQLRSK-KYSLLGGSNLLISNV--TDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 450 PSPPQGPLDVS 460
P P ++
Sbjct: 313 PWFLNHPSNLY 323
Score = 55.2 bits (133), Expect = 2e-08
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 58/259 (22%)
Query: 216 ENNLGTATASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS------ 262
+ L ++ H G +E +D G SA + P I
Sbjct: 4 GSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSA--ESDRGVPVIKWKKDGL 61
Query: 263 -LDALIGKRIKEFVTSTT--ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
L + R ++ + ++ + D G+Y+ EA ++S+
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDS-------GSIISRT- 113
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
V + G + S +T G+ +
Sbjct: 114 --------AKVM------------------VAGPLRFLSQT--ESITAFMGDTVLLKCEV 145
Query: 380 SGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD 438
G P PT W N +++P G + + + ++ + DSG Y N +
Sbjct: 146 IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL--QPGDSGVYRCSARNPASTR 203
Query: 439 -SASCKVYVVDKPSPPQGP 456
+V ++ P +
Sbjct: 204 TGNEAEVRILSDPGLHRQL 222
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 77.0 bits (190), Expect = 2e-17
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ + PG+P + +A + + L WTPP SD I Y + KD E+ +
Sbjct: 8 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRI 64
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ G TS + GL Y F++ A + G G ++
Sbjct: 65 TIEPG-TSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Score = 41.6 bits (98), Expect = 6e-05
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 436 GSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
GS +S + V+ P P + S LSW PP D I NY + +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDG 56
Query: 493 ATG 495
G
Sbjct: 57 EHG 59
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 311 EVVVVSKPGPPTGP--IDYTTVTPESVSMSWKPPVDDGGTPITG 352
++ V+++ G P P + S+ +SW PP D I
Sbjct: 8 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIAN 48
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 81.0 bits (200), Expect = 3e-17
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGET 70
PTDL+ T + QWTPP +TGY V + K K + + +
Sbjct: 19 PAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEINLAPDSS 74
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
S V GL+ Y+ V A+ ++ +
Sbjct: 75 SVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Score = 79.8 bits (197), Expect = 8e-17
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ + + P TD + + + W ITG+ V+ G
Sbjct: 103 AQGVVTTLENVSPPRRARVTDATETTITISWRTK----TETITGFQVDAVPANGQTPIQR 158
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS-KPTAPIVAKPKNL 112
+ S T+ GL G Y+ + +N + + P NL
Sbjct: 159 TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNL 208
Score = 77.9 bits (192), Expect = 3e-16
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPA 67
+ P++L + + + W PP + ITGY+++ + E
Sbjct: 197 DASTAIDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPRPRP 252
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEAS 99
G T T+ GL G Y V A+ E
Sbjct: 253 GVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 54.4 bits (131), Expect = 2e-08
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
+ S+ +V P L + +TP S S W PP +T Y V
Sbjct: 3 HHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPK 58
Query: 493 ATGVSDLFISKSEVKT 508
I+ + +
Sbjct: 59 EKTGPMKEINLAPDSS 74
Score = 52.9 bits (127), Expect = 7e-08
Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 46/189 (24%)
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
+ +EV+ P + +T VTP S+S W PP +TG
Sbjct: 10 SGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTG--------------- 50
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
+ + V + P + D S + T Y
Sbjct: 51 -----YRVRVTPKEKTGPMKEINLAPDSSS----VVVSGLMVATKY------------EV 89
Query: 428 TIQLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYV 486
++ + S A V ++ SPP+ V+D T + ++SW+ IT +
Sbjct: 90 SVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTK----TETITGFQ 144
Query: 487 VEKYESATG 495
V+ +
Sbjct: 145 VDAVPANGQ 153
Score = 46.3 bits (110), Expect = 9e-06
Identities = 38/275 (13%), Positives = 69/275 (25%), Gaps = 100/275 (36%)
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
+ + + + YE V A+ T + + VT+
Sbjct: 66 EINLAPDSSSVVVSGLMVATKYEVSVYALKDTLT-----------SRPAQGVVTTLE--- 111
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
PP T T ++++SW+
Sbjct: 112 ----------------------------------NVSPPRRAR-VTDATETTITISWRTK 136
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
+ ITG + V+ + I
Sbjct: 137 TE----TITG------------------------------------FQVDAVPANGQTPI 156
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ + Y + TD Y I L +N S+ + P L
Sbjct: 157 QRTIKPDVRSYTITGLQPGTD---YKIYLYTLNDNAR-SSPVVIDASTAIDAPSN-LRFL 211
Query: 461 DITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
TP S +SW+PP + IT Y+++ + +
Sbjct: 212 ATTPNSLLVSWQPP----RARITGYIIKYEKPGSP 242
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 76.9 bits (189), Expect = 3e-17
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG----YVVEMKDKTGNW 59
S + + KP ++L W + + +E +D +
Sbjct: 6 SGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH- 64
Query: 60 EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
V+ T V GL Y+F+++ + +G E S + +
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 47.3 bits (112), Expect = 7e-07
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
++ S KV + KP PP V +T S L W + +
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLR 53
Score = 38.8 bits (90), Expect = 7e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
M +VV +SKP PP VT S+ + W +
Sbjct: 7 GMEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQE 49
Score = 30.7 bits (69), Expect = 0.35
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 229 TGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
T + Y++R+ + +G
Sbjct: 73 YATRHVVEGLEPRTLYKFRLKVTSPSGE 100
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 76.3 bits (188), Expect = 4e-17
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
P +P+ L + + + WTPP + + GY++ + E V V + +
Sbjct: 14 ESQVPDQPSSLHVRP-QTNCIIMSWTPP-LNPNIVVRGYIIGYGVGSPYAET-VRVDSKQ 70
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
++ L Y ++A N AG G + P
Sbjct: 71 RYYSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGP 113
Score = 35.9 bits (83), Expect = 0.007
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVE 488
GS +S +D+ P P + +SW PPL+ + Y++
Sbjct: 1 GSSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNI-VVRGYIIG 53
Score = 33.9 bits (78), Expect = 0.024
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ + MSW PP++ + G
Sbjct: 18 PDQPSSLH--VRPQTNCIIMSWTPPLNPNI-VVRG 49
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 75.4 bits (186), Expect = 6e-17
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQ 410
PKI + D+++ G+ T+ F+G P P W+ G ++ GR E +++
Sbjct: 5 PPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
T ++ D G YT+ L N GSDSA+ +++
Sbjct: 63 TTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKN 286
+D ++ EGK + G P+++ + + R T +L I +
Sbjct: 13 SDISIDEGKVLTVACAFT---GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMD 69
Query: 287 SVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
++D G+Y + N++G D A + + + S
Sbjct: 70 VQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 41.1 bits (97), Expect = 6e-05
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 174 WSINGQV--CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
WS G+ Q GR ++ T T L I + D G Y+L+L N G+ +A+ ++
Sbjct: 39 WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 77.5 bits (191), Expect = 9e-17
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
G P + +D ++ + WTPP S + Y V TG V V +T
Sbjct: 95 VGSPKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVDGSKTRTK 150
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L+ G Y + +V E
Sbjct: 151 LVKLVPGVDYNVNIISVKGFEESEPISGIL 180
Score = 71.7 bits (176), Expect = 1e-14
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
+ P DLE +D + + L+W P++ Y + +G + +P TS
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKK-NEMEIPVDSTSF 60
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNLAPRIDRSTLNDVKI 126
+ GL G Y + A + + V PK + T N +
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGI--SFSDITENSATV 113
Score = 40.1 bits (94), Expect = 5e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P+ L+VSD T + SL W+ P+ + Y +
Sbjct: 6 DLDNPKD-LEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSP 44
Score = 36.3 bits (84), Expect = 0.010
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 426 SYTIQLV-NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 484
YTI LV S + P+G + SDIT S ++SW PP S + +
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSPKG-ISFSDITENSATVSWTPPR----SRVDS 124
Query: 485 YVVEKYESATG 495
Y V Y TG
Sbjct: 125 YRVS-YVPITG 134
Score = 29.3 bits (66), Expect = 2.1
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 210 HYSLTLENNLGTATASAHVTG--TEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
Y ++ G V G T + G Y + +V +P
Sbjct: 124 SYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 175
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 80.3 bits (198), Expect = 1e-16
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKA 62
+LI P DLE + + W P + Y + + G + +
Sbjct: 266 PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQE 321
Query: 63 VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
VP +++ T+ GL G Y V AV G AS I +
Sbjct: 322 FTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
Score = 71.4 bits (175), Expect = 1e-13
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK-DKTGNWEKAVVVPAGET 70
PTDL T+ D + + W PP +T ++V K + + +
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDN 149
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI-VAKPKNL 112
+ + L+ G Y V +V + + P +
Sbjct: 150 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGI 192
Score = 69.1 bits (169), Expect = 7e-13
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 6/114 (5%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPA 67
PT ++ +D + + W P + ITGY + + + VP
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPH 236
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNLAPRIDRST 120
S T+ L G Y + A+N V P++L T
Sbjct: 237 SRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPT 290
Score = 65.6 bits (160), Expect = 8e-12
Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 14 PGKPTDLEATDW-DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGET 70
PT+L D + + W ITGY + G VV A ++
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP-TAPIVAKPKNL 112
SCT L G Y V V P V P +L
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDL 101
Score = 46.7 bits (111), Expect = 9e-06
Identities = 27/201 (13%), Positives = 56/201 (27%), Gaps = 45/201 (22%)
Query: 295 YKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354
Y + + + PP + +T + P+++ ++W PP +T
Sbjct: 71 YNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTN-- 125
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYR 414
F + + +++ + + + T Y
Sbjct: 126 ------------------FLVRYSPVKNEEDVAELSISPSDNA----VVLTNLLPGTEY- 162
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPP 474
++ V S + P G +D SDIT S ++ W P
Sbjct: 163 -----------VVSVSSVYEQHE-STPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAP 209
Query: 475 LDDGGSPITNYVVEKYESATG 495
+ IT Y + +
Sbjct: 210 ----RATITGYRIRHHPEHFS 226
Score = 46.7 bits (111), Expect = 9e-06
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 47/189 (24%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PPT +++SW+ ITG + IT
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITG--------------------YRITT 38
Query: 378 -PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
P +G+ + V+ D Q+ + Y + +
Sbjct: 39 TPTNGQQGNSLEEVVHAD---------------QSSCTFDNLSPGL---EYNVSVYTVKD 80
Query: 437 S-DSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+S ++ PP L ++I P++ ++W PP +TN++V
Sbjct: 81 DKESVPISDTIIPAVPPPT-DLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNE 136
Query: 496 VSDLFISKS 504
+S S
Sbjct: 137 EDVAELSIS 145
Score = 39.4 bits (92), Expect = 0.002
Identities = 29/179 (16%), Positives = 45/179 (25%), Gaps = 47/179 (26%)
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+ + PTG ID++ +T S ++ W P ITG
Sbjct: 178 LRGRQKTGLDSPTG-IDFSDITANSFTVHWIAP----RATITG----------------- 215
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
+ I P+ I T Y +I
Sbjct: 216 ---YRIRH----HPEHFSGRPREDRVPHSRNSITLTNLTPGTEY------------VVSI 256
Query: 430 QLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
+N P+ L+V TP S +SW P + Y +
Sbjct: 257 VALNGREESPLLIGQ-QSTVSDVPR-DLEVVAATPTSLLISWDAP----AVTVRYYRIT 309
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 77.6 bits (191), Expect = 2e-16
Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 43/192 (22%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
V + SL +++ V D G Y +N+YG + VV +
Sbjct: 71 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERS---------------- 114
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT---- 390
+P + G P + + + G + +P W
Sbjct: 115 ---RHRPIL------QAGLPA--------NASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 157
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDSGSYTIQLVNTVGSDSASCKV 444
NG + PDG + ++ I + + D+G Y ++ N +G + S +
Sbjct: 158 KNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Query: 445 YVVDKPSPPQGP 456
V+ K P
Sbjct: 218 TVLPKQQAPGRE 229
Score = 62.6 bits (152), Expect = 2e-11
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 353 APKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
AP T+ + R V A P G P PT W NG E + RI NQ
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 74
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ +S +D G+YT + N GS + + + VV++
Sbjct: 75 HWSLIM---ESVVP-SDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
Score = 52.6 bits (126), Expect = 7e-08
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 38/183 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--- 229
W NG+ + R +++ L + SD G+Y+ +EN G+ + H+
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE 112
Query: 230 ---------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------------- 262
+ + G +P I
Sbjct: 113 RSRHRPILQAGLPANASTVVGG------DVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPD 166
Query: 263 -LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
L L + +S L + N D+G Y + N G + V+ K P
Sbjct: 167 GLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
Query: 322 TGP 324
Sbjct: 227 GRE 229
Score = 33.3 bits (76), Expect = 0.14
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W+K E + ++ + + ++ +E L + + +D G Y + N +G
Sbjct: 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV-LALFNVTEADAGEYICKVSNYIGQ 210
Query: 222 ATASAHVT 229
A SA +T
Sbjct: 211 ANQSAWLT 218
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 73.6 bits (181), Expect = 3e-16
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE D + + W S + Y + + G+ + VP ++
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A + PG I +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S P L+V D TP S +SW + Y + E+
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGD 51
Score = 29.3 bits (66), Expect = 0.92
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
PT ++ TP S+ +SW +
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKY 40
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 73.3 bits (180), Expect = 3e-16
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE + + W P+S S + Y + + GN + VP ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A G +PI
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMF-MYSPISIN 97
Score = 38.2 bits (89), Expect = 6e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
S P L+V TP S +SW P+ S + Y + E+
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAPMS--SSSVYYYRITYGETGGN 47
Score = 30.1 bits (68), Expect = 0.47
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
S PT ++ TP S+ +SW P+ +
Sbjct: 3 SVSSVPTK-LEVVAATPTSLLISWDAPMSSS--SVYY 36
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 72.5 bits (178), Expect = 4e-16
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVPAG 68
P T T+ + W ++G+ VE + + G+ + + +P+
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
TS +P L+ G Y V ++ G T+
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Score = 39.4 bits (92), Expect = 2e-04
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
V++IT S +SW D ++ + VE S G
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEG 46
Score = 26.7 bits (59), Expect = 6.5
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVD 344
T T +T S +SW D
Sbjct: 6 HLVATSES-VTEITASSFVVSWVSASD 31
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 78.1 bits (192), Expect = 5e-16
Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 27/194 (13%)
Query: 268 GKRIK--EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
G + E V L + N+ +DSG Y + + V +
Sbjct: 47 GTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDA--------- 97
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKIT--SDLSIRDMTVLAGEEFTITVPFSGRP 383
P S + TGAP T + + + V A P +G P
Sbjct: 98 ------PSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNP 151
Query: 384 KPTPIWTVNGDEVSPDGRIKFETSENQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDS 439
P+ W NG E + RI +Q + +S + D G+YT + N GS
Sbjct: 152 TPSISWLKNGREFRGEHRIGGIKLRHQQWSLVM---ESVVPS-DRGNYTCVVENKFGSIR 207
Query: 440 ASCKVYVVDKPSPP 453
+ + V+++
Sbjct: 208 QTYTLDVLERSPHR 221
Score = 72.7 bits (178), Expect = 3e-14
Identities = 48/327 (14%), Positives = 80/327 (24%), Gaps = 90/327 (27%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W +G R L + S D+G YS +
Sbjct: 43 WVKDGTGLVPSER----VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAP 98
Query: 234 TDNNVHEGKAYEYRVSAVN-----------------------------AAGTEKPKIS-- 262
+ + +G+ AAG P IS
Sbjct: 99 SSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL 158
Query: 263 LDALIGKRIKE-------FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ G+ + + SL +++ V D G Y +N +G + V+
Sbjct: 159 KN---GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375
+ P + G P + T + G +
Sbjct: 216 ERSPHR-------------------PIL------QAGLPA--------NQTAVLGSDVEF 242
Query: 376 TVPFSGRPKPTPIWT----VNGDEVSPDGRIKFETSENQTIYRNKSAK--------RATD 423
+P W VNG +V PDG + D
Sbjct: 243 HCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFED 302
Query: 424 SGSYTIQLVNTVGSDSASCKVYVVDKP 450
+G YT N++G S + V+
Sbjct: 303 AGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 44.2 bits (104), Expect = 7e-05
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 11/135 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
P + +G+ ++ P G P +W +G + P R+ Q
Sbjct: 7 VPGPEPGQQ-EQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS---PPQGPLDVSDITPESCS 468
+A DSG+Y+ + T V V D PS G + D ++ +
Sbjct: 66 ----LNA-SHEDSGAYSCRQRLTQRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 469 LSWKPPLDDGGSPIT 483
W P +
Sbjct: 120 PYWTRPERMDKKLLA 134
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 74.0 bits (181), Expect = 5e-16
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 33/133 (24%)
Query: 348 TPITGAPKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE--------- 395
+ PKI D R + V+AG + + VP SG P PT IW +
Sbjct: 8 SSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPA 67
Query: 396 --------------------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTV 435
+GR++ ET+++++I+ + A++ D G YT+ + N V
Sbjct: 68 PDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPV 126
Query: 436 GSDSASCKVYVVD 448
G D + V V+D
Sbjct: 127 GEDQVNLTVKVID 139
Score = 57.1 bits (137), Expect = 4e-10
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query: 106 VAKPKNLAPRID----RSTLNDVKIKAGQSFSFDVKEFR-----ELSYTKSPLRALGVRA 156
+ P+I + + + AG DV + + K+ + A
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVP-ISGDPAPTVIWQKAITQGNKAPA 64
Query: 157 NSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLE 216
+ + + +C+ GR V+TTK ++ + + D G Y++T++
Sbjct: 65 RPAPDAPEDTGDSDEWVFD-KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Query: 217 NNLGTATASAHVT 229
N +G + V
Sbjct: 124 NPVGEDQVNLTVK 136
Score = 49.7 bits (118), Expect = 2e-07
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
R++ T + ++ + ++D G+Y + KN G D ++ V V+
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 72.8 bits (179), Expect = 6e-16
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P D+TV G+ + SG P P W ++G V PD K EN
Sbjct: 9 RPHFLQAPG--DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ D+G YT N G +S S ++ V K S P
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 39.3 bits (92), Expect = 3e-04
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322
SL I+ +D+GIY A N G + +E+VV +K P+
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 33.5 bits (77), Expect = 0.040
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 174 WSINGQVCQIGGRADVQTTKSET-VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W ++G+ + + ++ L I + D G Y+ N G + S +
Sbjct: 43 WQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 79.3 bits (195), Expect = 6e-16
Identities = 37/184 (20%), Positives = 57/184 (30%), Gaps = 42/184 (22%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
F A+L I ++ DSG++ A N +G + VV K P+ TTV
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF-- 324
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVN 392
V GE + V + PKP W
Sbjct: 325 ---------------------------------VNDGENVDLIVEYEAFPKPEHQQWIYM 351
Query: 393 GDEVSPDGRIKFETSENQTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ ++ I K T+ G+YT + N+ + + + VYV
Sbjct: 352 NRTFTDKWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNVYVN 410
Query: 448 DKPS 451
KP
Sbjct: 411 TKPE 414
Score = 72.0 bits (176), Expect = 2e-13
Identities = 37/320 (11%), Positives = 64/320 (20%), Gaps = 84/320 (26%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV-----LDIPFCSRSDTGHYSLTLENNLGTATASAHV 228
W ++ + + L I +D+G + N G+A + +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 229 T----------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI-----------SLDALI 267
T V++G+ + V KP+
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEY---EAFPKPEHQQWIYMNRTFTDKWEDY 362
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
K E + L++ + G Y N V V +KP
Sbjct: 363 PKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP--------- 413
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+T + +G P+PT
Sbjct: 414 -----------------------------------EILTYDRLVNGMLQCVAAGFPEPTI 438
Query: 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-----------RATDSGSYTIQLVNTVG 436
W +G+ + N VG
Sbjct: 439 DWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG 498
Query: 437 SDSASCKVYVVDKPSPPQGP 456
SA P
Sbjct: 499 KTSAYFNFAFKGNNKEQIHP 518
Score = 65.5 bits (159), Expect = 2e-11
Identities = 45/286 (15%), Positives = 81/286 (28%), Gaps = 43/286 (15%)
Query: 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGTEFTDNNVHEGKAYEY 246
D + ++TG Y+ T ++ L + F + GK
Sbjct: 72 DETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDND 131
Query: 247 RVSAVNAAGTEKPKISLDALIGKRIKE---FVTSTTASLNIKNSVRK-DSGIYKIEAKND 302
+ E SL GK + + F+ A + IK+ R +
Sbjct: 132 TLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQE 191
Query: 303 YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362
G + + ++ +P P+ +V+ S
Sbjct: 192 -GKSVLSEKFILKVRPAFKAVPV--VSVSKASY--------------------------- 221
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAK-- 419
+ GEEFT+T W + + + R +
Sbjct: 222 ---LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTIS 278
Query: 420 --RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDIT 463
R DSG + NT GS + + + VVDK P+ + +
Sbjct: 279 SARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Score = 53.9 bits (129), Expect = 7e-08
Identities = 37/259 (14%), Positives = 69/259 (26%), Gaps = 55/259 (21%)
Query: 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSP 148
A N G + T +V K I V + G++ V
Sbjct: 292 ANNTFGSANVTT-TLEVVDKGF---INIFPMINTTVFVNDGENVDLIV------------ 335
Query: 149 LRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDT 208
+ W+ ++ F + + + + L + ++
Sbjct: 336 -EYEAFPKPEHQQWIYMNRTFTDKWE-------DYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 209 GHYSLTLENNLGTATASAHVTGTEFTDNNVHEG---KAYEYRVSAV---NAAGTEKPKI- 261
G Y+ + N+ A + +V V+ Y+ V+ + AAG +P I
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVY--------VNTKPEILTYDRLVNGMLQCVAAGFPEPTID 439
Query: 262 ----------------SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+D +I +S K +G + +A ND G
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499
Query: 306 DMADIEVVVVSKPGPPTGP 324
A P
Sbjct: 500 TSAYFNFAFKGNNKEQIHP 518
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 75.5 bits (185), Expect = 7e-16
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVP 66
+ P T T+ + W ++G+ VE + + G+ + + +P
Sbjct: 106 ETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLP 161
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ TS +P L+ G Y V ++ G T+
Sbjct: 162 STATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198
Score = 73.2 bits (179), Expect = 4e-15
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
+ T + +QW P S I+ Y++ + K K +P S T+
Sbjct: 5 EVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIK 61
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPR 115
GL G Y+ Q+ ++ G E ++ + +
Sbjct: 62 GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSN 101
Score = 40.8 bits (95), Expect = 3e-04
Identities = 26/182 (14%), Positives = 46/182 (25%), Gaps = 36/182 (19%)
Query: 319 GPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP 378
GP I T P S + W P + I+ + +
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAP---QPSHISK--------------------YILRWR 38
Query: 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY--RNKSAKRATDSGSYTIQLVNTVG 436
T+ G S + + +Y + S ++ T
Sbjct: 39 PKNSVGRWKEATIPGHLNS----YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTST 94
Query: 437 SDSASCKVYVVDKPSPPQGP---LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESA 493
S + + V++IT S +SW ++ + VE S
Sbjct: 95 STPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA----SDTVSGFRVEYELSE 150
Query: 494 TG 495
G
Sbjct: 151 EG 152
Score = 28.9 bits (64), Expect = 3.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 229 TGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS 262
T T ++ G+ Y V ++ G + +S
Sbjct: 163 TATSVNIPDLLPGRKYIVNVYQISEDGEQSLILS 196
Score = 28.1 bits (62), Expect = 5.6
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 32/118 (27%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNS 287
+T + G YE ++ ++ G ++ R TST+ +
Sbjct: 53 GHLNSYTIKGLKPGVVYEGQLISIQQYGHQEV---------TRFDFTTTSTSTPVTSNTV 103
Query: 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345
+ + P T T +T S +SW D
Sbjct: 104 TGETT----------------------PFSPLVATS-ESVTEITASSFVVSWVSASDT 138
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 75.4 bits (185), Expect = 7e-16
Identities = 24/178 (13%), Positives = 52/178 (29%), Gaps = 24/178 (13%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
++ + + ++ +D G Y + ++ + + + +V
Sbjct: 51 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG--------------- 95
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI- 388
+ + P L V + + K T I
Sbjct: 96 --DVFKKLQKEAEFQRQEWIRKQGPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIV 150
Query: 389 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
W + E+S D + F+ + S K D+G Y + L + G D + K+
Sbjct: 151 WYKDEREISVDEKHDFKDGICTLLITEFSKK---DAGIYEVILKDDRGKDKSRLKLVD 205
Score = 54.2 bits (130), Expect = 1e-08
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 363 RDMTVLAGEEFTITV-PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-R 420
+ +L + + + N E+ + K N I K +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 69
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
D G+YT QL + ++ ++ V V D Q +
Sbjct: 70 DEDEGTYTFQLQDGKATNHSTV-VLVGDVFKKLQKEAEFQRQEWI 113
Score = 51.5 bits (123), Expect = 1e-07
Identities = 26/169 (15%), Positives = 58/169 (34%), Gaps = 28/169 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV--LDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT 231
+ N + G + + ++ + + + D G Y+ L++ T ++ + G
Sbjct: 37 YIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 96
Query: 232 EFTD--------NNVHEGKAYEYRVSAVNAAGTEKPKISLDALI--------------GK 269
F K + V ++ T + + L + +
Sbjct: 97 VFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDER 156
Query: 270 RIKE----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
I +L I +KD+GIY++ K+D G D + +++V
Sbjct: 157 EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 72.5 bits (178), Expect = 8e-16
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 12 DEPGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAG 68
P P +L+ + + + W PPI G I Y+VE + W A
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS---QRAA 61
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ L+ Y +V AV + G G S
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95
Score = 35.9 bits (83), Expect = 0.005
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 448 DKPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P P+ L + W PP+ G I Y+VE S
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRS 50
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 316 SKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITG 352
S P P + + W PP+ G I
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIRE 42
Score = 27.0 bits (60), Expect = 5.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
N+ Y RV+AV + G
Sbjct: 60 AASNFTEIKNLLVNTLYTVRVAAVTSRGI 88
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 71.5 bits (176), Expect = 1e-15
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
PI+ P I + L +D TV + V +G P+PT IWT +G ++ G+ K +
Sbjct: 2 PISSKPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDK 59
Query: 409 NQ---TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
I++ +DSG YT + N+ GS S+SCK+ +
Sbjct: 60 GGFFLEIHK----TDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 41.1 bits (97), Expect = 6e-05
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W+ +G+ GG+ + K L+I SD+G Y+ T++N+ G+ ++S +T
Sbjct: 40 WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 32.6 bits (75), Expect = 0.052
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 231 TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-----LDALIGKRIKEFVTSTTASLNIK 285
T D V ++ V A G +P G + K L I
Sbjct: 11 TGLQDTTVSSDSVAKFAVKAT---GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIH 67
Query: 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ DSG+Y KN G + ++ +
Sbjct: 68 KTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 71.7 bits (176), Expect = 1e-15
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
P++L D + + WTPP + Y + +G EK+V VP +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPP----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+P L Y+ V A+ AAG EA T
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 36.7 bits (85), Expect = 0.003
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
SPP L ++ TP+S +SW PP + +Y + Y A+G+
Sbjct: 8 RSPPSN-LALASETPDSLQVSWTPP----LGRVLHYWLT-YAPASGLGP 50
Score = 27.0 bits (60), Expect = 6.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPP 342
PP+ + + TP+S+ +SW PP
Sbjct: 8 RSPPSN-LALASETPDSLQVSWTPP 31
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 71.7 bits (176), Expect = 2e-15
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P+ L + + WTPP + + GY + + + + + V + T
Sbjct: 28 PEVPSSLHVRPLV-TSIVVSWTPP-ENQNIVVRGYAIGYGIGSPHAQT-IKVDYKQRYYT 84
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ L Y ++A N G G V +P P
Sbjct: 85 IENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPHTSGP 123
Score = 32.4 bits (74), Expect = 0.10
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 448 DKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
D+ P+ P + S +SW PP + + Y + +
Sbjct: 23 DETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSP 69
Score = 31.7 bits (72), Expect = 0.18
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
P P+ S+ +SW PP + + G
Sbjct: 28 PEVPSSLH--VRPLVTSIVVSWTPPENQNI-VVRG 59
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 76.6 bits (188), Expect = 3e-15
Identities = 31/264 (11%), Positives = 55/264 (20%), Gaps = 63/264 (23%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTG------TEFTDNNVHEGKAYEYRVSAVNAAGTE 257
N LG T + G+ R AV+
Sbjct: 199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH--VNH 256
Query: 258 KPKIS-----------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
++ + + + R D+G Y +
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-- 314
Query: 307 MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366
V +V K I + S D
Sbjct: 315 -QSALVTIVEKG------------------------------------FINATNSSEDYE 337
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGS 426
+ EEF +V F P+ WT + P + + + + + N G
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSF-PCEQKGLDNGYSISKFCNHK----HQPGE 392
Query: 427 YTIQLVNTVGSDSASCKVYVVDKP 450
Y N + + +
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRSGT 416
Score = 68.9 bits (168), Expect = 1e-12
Identities = 33/317 (10%), Positives = 64/317 (20%), Gaps = 72/317 (22%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSA-----VNAAGTEK 258
S + Y + E+ + + V+E A E VSA V
Sbjct: 23 SVGKSSSYPMVSESPEDLG-CALRPQSSGT----VYEAAAVEVDVSASITLQVLVDAPGN 77
Query: 259 PKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+L + + S+ I +G Y + +++ V +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 315 VSKPGPPTGPIDYTTVTPESV-----------SMSW----KPPVDDGGTPITGAPKITSD 359
+ + + + + W K
Sbjct: 138 RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV 197
Query: 360 L----------------------------------SIRDMTVLAGEEFTIT-VPFSGRPK 384
L ++ + + GE I
Sbjct: 198 LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-----RATDSGSYTIQLVNTVGSDS 439
W + + + T D+G YT
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-- 315
Query: 440 ASCKVYVVDKPSPPQGP 456
S V +V+K
Sbjct: 316 -SALVTIVEKGFINATN 331
Score = 61.2 bits (148), Expect = 3e-10
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 4/119 (3%)
Query: 342 PVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR 401
P D G + + + V T+ V + +W ++
Sbjct: 37 PEDLGCALRPQSSGTVYEA--AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 402 IKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ ++ K T +G Y + + + + + V + +
Sbjct: 95 FDLQNRGVVSMVILKM--TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR 151
Score = 46.6 bits (110), Expect = 1e-05
Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 18/159 (11%)
Query: 174 WSINGQV------CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
W + + ++ + +T + +R+DTG+Y+ + + +A
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-QSALVT 320
Query: 228 VTGTEFTDNNVHEGKAYEYRVSA-----VNAAGTEKPKIS---LDALIGKRIKEFVTSTT 279
+ F N + + YE V + + + K
Sbjct: 321 IVEKGFI-NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY- 378
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
S++ + + G Y A+ND + + S
Sbjct: 379 -SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 70.5 bits (173), Expect = 3e-15
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSCTVP 75
P+ +E D + W PP P+ G+ + K + + E ++
Sbjct: 6 PSQIEVKDVTDTTALITWMPP----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIG 61
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
L Y+ + + +K T
Sbjct: 62 NLKPDTEYEVSLISRRGDMSSNPAKETF 89
Score = 38.1 bits (89), Expect = 7e-04
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
+ P ++V D+T + ++W PP P+ + + Y D
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPS----QPVDGFELT-YGIKDVPGD 45
Score = 27.7 bits (62), Expect = 3.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ P+ I+ VT + ++W PP P+ G
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPSQ----PVDG 32
Score = 27.0 bits (60), Expect = 6.3
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 229 TGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+++ N+ YE + + + P
Sbjct: 54 DENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 70.5 bits (173), Expect = 3e-15
Identities = 16/90 (17%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P L +D D + W P+ V G P TS
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGA----PRPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L TY +V + G
Sbjct: 64 LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 36.6 bits (85), Expect = 0.003
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P L SD++ ++ + W+ P+ V Y S+ G
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVT-YVSSEG 47
Score = 28.5 bits (64), Expect = 1.7
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 210 HYSLTLENNLGTATASAHVTG--TEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
+T ++ G + G T + Y RV+ + G
Sbjct: 37 LVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSST 88
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 71.1 bits (174), Expect = 4e-15
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 5/101 (4%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPA 67
PT LE + + W P + Y + + GN + VP
Sbjct: 24 FQGSVSDVPTKLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPG 79
Query: 68 GETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+++ T+ GL G Y V AV A I +
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 36.8 bits (85), Expect = 0.003
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P L+V TP S +SW P + Y + Y G
Sbjct: 29 SDVPTK-LEVVAATPTSLLISWDAP----AVTVRYYRIT-YGETGG 68
Score = 26.8 bits (59), Expect = 9.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPP 342
S PT ++ TP S+ +SW P
Sbjct: 27 SVSDVPTK-LEVVAATPTSLLISWDAP 52
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 76.1 bits (187), Expect = 4e-15
Identities = 53/297 (17%), Positives = 97/297 (32%), Gaps = 60/297 (20%)
Query: 166 SEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATAS 225
P L++ W +N I +++ L I SD G+YS +++ T S
Sbjct: 128 HYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187
Query: 226 AHVTGTEFTDNNVHEGKAYEYRVSAV----------------NAAGTEKPKISLDALIGK 269
++ + + + A G P+I L G
Sbjct: 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS 247
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
+ ++++S L+I+N +D G Y+ EA+N G D +++ ++P
Sbjct: 248 QTSKWLSSEP-LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQP--------DWL 298
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
D G + + SG+P+P W
Sbjct: 299 DVIT------------------------------DTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+G ++ RI+ + +K DSG Y N G+ AS ++ V
Sbjct: 329 LRDGQPLASQNRIEV---SGGELRFSKLVL--EDSGMYQCVAENKHGTVYASAELTV 380
Score = 65.3 bits (159), Expect = 1e-11
Identities = 47/302 (15%), Positives = 77/302 (25%), Gaps = 52/302 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSE-TVLDIPFCSRSDTGHYSLTLENNLGTATA-SAHVT-- 229
W +NG ++ D + ++ D G Y N GT + A +
Sbjct: 41 WKMNGT--ELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-----LDALIGKRIKEFVTST 278
E + EG + S I + FV+ T
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPP--PHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
T +L I + D G Y A + +SV
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHID-------------------------FITKSVFSK 191
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
+ AP I + D L G+ T+ G P P W
Sbjct: 192 FSQLSLAAEDARQYAPSIKAKFP-ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS-QT 249
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
+ ++ D G+Y + N G D+ ++ + +P D
Sbjct: 250 SKWLSS----EPLLHIQNV--DFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD 303
Query: 459 VS 460
Sbjct: 304 TE 305
Score = 51.0 bits (122), Expect = 5e-07
Identities = 32/147 (21%), Positives = 49/147 (33%), Gaps = 23/147 (15%)
Query: 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDN 236
G + SE +L I D G Y EN G T + TD
Sbjct: 245 DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT 304
Query: 237 NVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIK--EFVTSTTASLNIKNSVR 289
G A+G +P + D G+ + + + L V
Sbjct: 305 EADIGS------DLRWSCVASGKPRPAVRWLRD---GQPLASQNRIEVSGGELRFSKLVL 355
Query: 290 KDSGIYKIEAKNDYGIDMADIEVVVVS 316
+DSG+Y+ A+N +G A E+ V +
Sbjct: 356 EDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 4/110 (3%)
Query: 351 TGAPKITSD-LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
+ P A E+ T+T P T W +NG E+ ++
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKPSPPQGPLD 458
+ N +A D+GSY N G+ S + D
Sbjct: 62 DLVISNPV--KAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERD 109
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 72.9 bits (179), Expect = 6e-15
Identities = 20/123 (16%), Positives = 31/123 (25%), Gaps = 11/123 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPP---ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P ++A+ D + + W + Y V K K A
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT-------APIVAKPKNLAPRIDRSTLND 123
S V GL Y+F V S P PK++
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP-PKDVTVVSKEGKPKT 123
Query: 124 VKI 126
+ +
Sbjct: 124 IIV 126
Score = 66.7 bits (163), Expect = 8e-13
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 4 SVLIKNPFDEPGKP---TDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
+ P P + + + + + W PP G ITGY++
Sbjct: 95 TAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEI 153
Query: 61 KA---VVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V + + L Y F+++A N+ G G S+
Sbjct: 154 HDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/206 (13%), Positives = 53/206 (25%), Gaps = 52/206 (25%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPV---DDGGTPITGAPKITSDLSIRDMTVLAGEEFT 374
PP G + ++ +++ ++W T
Sbjct: 5 MMPPVGVQ-ASILSHDTIRITWADNSLPKHQKITDSRY---------------------- 41
Query: 375 ITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--V 432
+TV P + Y K T Y +
Sbjct: 42 --------------YTVRWKTNIPANTKYKNANATTLSYLVTGLKPNT---LYEFSVMVT 84
Query: 433 NTVGSDSASCKVYVV---DKPSPPQGPLDVS--DITPESCSLSWKPPLDDGGSPITNYVV 487
S + S + P+ P + V + P++ ++W+PP + G IT Y++
Sbjct: 85 KGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYII 143
Query: 488 EKYESATGVSDLFISKSEVKTGSLMT 513
Y + V L
Sbjct: 144 Y-YSTDVNAEIHDWVIEPVVGNRLTH 168
Score = 30.9 bits (70), Expect = 0.80
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGP-----IDYTTVTPESVSMSWKPPVDDGGTPI 350
+ + + PT P + P+++ ++W+PP + G I
Sbjct: 80 SVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KI 138
Query: 351 TG 352
TG
Sbjct: 139 TG 140
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 75.2 bits (185), Expect = 8e-15
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSC 72
PT ++ +D + + W P + ITGY + + + VP S
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVPHSRNSI 333
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKN 111
T+ L G Y + A+N V+ +
Sbjct: 334 TLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHHH 372
Score = 73.7 bits (181), Expect = 2e-14
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVPAGETS 71
E + TDL D + L+WTP S I GY + + G V +
Sbjct: 95 EVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
TV GL G Y V + G + T P
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP 189
Score = 71.4 bits (175), Expect = 1e-13
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETSC 72
PTDL T+ D + + W PP +T ++V + + + +
Sbjct: 187 VPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAV 243
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L+ G Y V +V +
Sbjct: 244 VLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274
Score = 64.8 bits (158), Expect = 2e-11
Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 17 PTDLEAT-DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW--EKAVVVPAGETSCT 73
PT+L + D + + W ITGY + G VV A ++SCT
Sbjct: 6 PTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKP-TAPIVAKPKNL 112
L G Y V V P V + +L
Sbjct: 63 FDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDL 102
Score = 42.9 bits (101), Expect = 2e-04
Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 48/187 (25%)
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+ + PPT + +T + P+++ ++W PP +T
Sbjct: 179 TTLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPP---PSIDLTN----------------- 217
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
F + + +++ + + + T Y ++
Sbjct: 218 ---FLVRYSPVKNEEDVAELSISPSDNA----VVLTNLLPGTEY------------VVSV 258
Query: 430 QLVNTVG-SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
V S + P G +D SDIT S ++ W P + IT Y +
Sbjct: 259 SSVYEQHESTPLRGRQKTG--LDSPTG-IDFSDITANSFTVHWIAP----RATITGYRIR 311
Query: 489 KYESATG 495
+
Sbjct: 312 HHPEHFS 318
Score = 42.5 bits (100), Expect = 2e-04
Identities = 41/293 (13%), Positives = 72/293 (24%), Gaps = 109/293 (37%)
Query: 210 HYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGK 269
+ T + H + T +N+ G Y V V P
Sbjct: 38 TTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---------- 87
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
I ++ + T + +
Sbjct: 88 ----------------------------------------ISDTIIPEVPQLTD-LSFVD 106
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
+T S+ + W P + I G + ITV +G P
Sbjct: 107 ITDSSIGLRWTPL---NSSTIIG--------------------YRITVVAAGEGIPIFED 143
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG-----SYTIQL--VNTVGSDSASC 442
V+ T +G Y I + + G +SA
Sbjct: 144 FVDSSVGY-----------------------YTVTGLEPGIDYDISVITLINGG-ESAPT 179
Query: 443 KVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
+ PP L ++I P++ ++W PP +TN++V
Sbjct: 180 TLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNE 228
Score = 38.3 bits (89), Expect = 0.005
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 426 SYTIQLVNTVGSDSASCKVYVVDKPSPPQ-GPLDVSDITPESCSLSWKPPLDDGGSPITN 484
Y + V TV D S + P PQ L DIT S L W P S I
Sbjct: 71 EYNVS-VYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIG 126
Query: 485 YVVEKYESATGVS 497
Y + + G+
Sbjct: 127 YRITVVAAGEGIP 139
Score = 30.5 bits (69), Expect = 1.4
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
SPP ++ ++SW+ IT Y + +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERS---TTPDITGYRITTTPT 42
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 72.2 bits (177), Expect = 1e-14
Identities = 39/195 (20%), Positives = 58/195 (29%), Gaps = 43/195 (22%)
Query: 268 GKRIKEFVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
+ EF + + L I+ +D IY+ A N+ G + V+ + P G
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF-- 108
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
P I + V T+ SG P P
Sbjct: 109 ---------------------------PTIDMGP--QLKVVERTRTATMLCAASGNPDPE 139
Query: 387 PIWTVNGDEVSPD---GRIKFETSENQ---TIYRNKSAKRATDSGSYTIQLVNTVGSD-S 439
W + V GRIK SE+ I + +D G Y N+ G+ S
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ----SEESDQGKYECVATNSAGTRYS 195
Query: 440 ASCKVYVVDKPSPPQ 454
A +YV
Sbjct: 196 APANLYVRGTKHHHH 210
Score = 69.8 bits (171), Expect = 6e-14
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-T 411
P+ T D T ++G + +G P+P +W G +VS E + +
Sbjct: 6 PPRFTRTPV--DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ R + + D Y N VG S S ++ V+ + P+G
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
Score = 50.2 bits (120), Expect = 3e-07
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 28/170 (16%)
Query: 174 WSINGQVCQIGGRADVQTT-KSETVLDI-PFCSRSDTGHYSLTLENNLGTATASAHVT-- 229
W+ G+ ++ S +VL I P + D Y NN+G + S +T
Sbjct: 40 WNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
Query: 230 ------------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--------LDALIGK 269
V + +A G P+I+ +
Sbjct: 100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS---GNPDPEITWFKDFLPVDTSNNNG 156
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKP 318
RIK+ + + +L I+ S D G Y+ A N G A + V
Sbjct: 157 RIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 74.6 bits (183), Expect = 1e-14
Identities = 54/310 (17%), Positives = 84/310 (27%), Gaps = 56/310 (18%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVT--- 229
W +G+ + K E L SD GHY E G A+
Sbjct: 41 WKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99
Query: 230 ----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS------------LDALIGKRIKE 273
+ + EG+ ++ KP I+ +RI
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITA 157
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ D Y AKN + + + +
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEI-------------KGVTK 204
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
S PV K DM AG+ I + P P + NG
Sbjct: 205 DNSGYKGEPV------PQYVSK--------DMMAKAGDVTMIYCMYGSNPMGYPNYFKNG 250
Query: 394 DEVSPDGRIKF---ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDK 449
+V+ + + + + + + D G YT ++ N VG S K+ VV
Sbjct: 251 KDVNGNPEDRITRHNRTSGKRLLFKTT--LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308
Query: 450 PSPPQGPLDV 459
P Q P V
Sbjct: 309 PKYEQKPEKV 318
Score = 65.3 bits (159), Expect = 1e-11
Identities = 45/293 (15%), Positives = 74/293 (25%), Gaps = 66/293 (22%)
Query: 177 NGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTEFTD 235
N V R + + SD Y T +N T
Sbjct: 145 NADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK 204
Query: 236 NNVHEGKAYEYRVSAVN--------------AAGTEKPKIS-------LDALIGKRIKEF 274
+N + + + + ++ RI
Sbjct: 205 DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH 264
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
++ L K ++ +D G+Y E N G +++ VVS P PE
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP--------KYEQKPE 316
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
V + V G++ TI +G P P +W+ N
Sbjct: 317 KV-----------------------------IVVKQGQDVTIPCKVTGLPAPNVVWSHNA 347
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ GR + + D G Y + N G V V
Sbjct: 348 KPL-SGGRATV---TDSGLVIKGVKN--GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 47.6 bits (113), Expect = 6e-06
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 7/118 (5%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETS 407
P+ P + + ++ + G + W +G +
Sbjct: 2 PVDKYPVLKDQPA--EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ ++ + +A+D G Y G AS +V K P + TP
Sbjct: 60 DEGSLVFLRP--QASDEGHYQCFAETPAG--VASSRVISFRKTYLIASPAKTHEKTPI 113
Score = 45.7 bits (108), Expect = 2e-05
Identities = 38/255 (14%), Positives = 64/255 (25%), Gaps = 62/255 (24%)
Query: 84 QFQVRAVNAAGPGEASKPTAPIV----AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEF 139
++ A NAA E I + + D+ KAG
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM-- 235
Query: 140 RELSYTKSPLRALG-----VRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS 194
+ K + + + + G+
Sbjct: 236 -----------YGSNPMGYPN------YFKNGKDVNGNPEDRITRHNRTSGK-------- 270
Query: 195 ETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVTGTE---FT-----DNNVHEGKAYE 245
L D G Y+ ++N +G S +T + V +G+
Sbjct: 271 --RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ--- 325
Query: 246 YRVSAV---NAAGTEKPKIS--LDALIGKRIKE-FVTSTTASLNIKNSVRKDSGIYKIEA 299
G P + + K + T T + L IK D G Y A
Sbjct: 326 ---DVTIPCKVTGLPAPNVVWSHN---AKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRA 379
Query: 300 KNDYGIDMADIEVVV 314
N++G + V V
Sbjct: 380 TNEHGDKYFETLVQV 394
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 68.9 bits (169), Expect = 1e-14
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-- 410
AP+IT + R V G+ + +P W NG E+ +I + +
Sbjct: 8 APRITLRM--RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 411 -TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
I DSG+Y N G S + V
Sbjct: 66 LEILD----CHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA--HVTGT 231
W NG Q + T L+I C D+G Y N G A+ A VTG
Sbjct: 42 WYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Query: 232 EF 233
++
Sbjct: 102 DY 103
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+I TS +L I + DSG Y+ N G + V
Sbjct: 52 SSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 75.4 bits (185), Expect = 1e-14
Identities = 51/300 (17%), Positives = 90/300 (30%), Gaps = 64/300 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-- 231
W +N Q + R +Q + L + +R+D G Y ++N L + +
Sbjct: 322 WWVNNQSLPVSPR--LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY 379
Query: 232 -------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
+ G A A + S +D G + T L
Sbjct: 380 GPDDPTISPSYTYYRPGVNLSLSCHA---ASNPPAQYSWLID---GNIQQH-----TQEL 428
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
I N K+SG+Y +A N + P
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPK-------------------- 468
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
P + V + T + +W VNG + R+
Sbjct: 469 ------PSISSNNSK--------PVEDKDAVAFTCEPEAQNTTY-LWWVNGQSLPVSPRL 513
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS-PPQGPLDVS 460
+ ++ N+T+ + R D+ +Y + N+V ++ S + V+ P P P D S
Sbjct: 514 QL-SNGNRTL-TLFNVTRN-DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570
Score = 75.4 bits (185), Expect = 1e-14
Identities = 42/305 (13%), Positives = 86/305 (28%), Gaps = 77/305 (25%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +NG Q L IP + +++G Y+ N+ + T
Sbjct: 237 WFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY 285
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL--DALIGKRIKEFVTSTTA 280
T N V + A + + + + +++
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEP---EIQNTTYLWWVNNQSLPVSPRLQLSNDNR 342
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
+L + + R D G Y+ +N+ +D +D + + V+ P PT
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT----------------- 385
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399
+S G +++ + P W ++G+
Sbjct: 386 --------------------ISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Query: 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ S +SG YT Q N+ S + + P+ +
Sbjct: 426 QELFI------------SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISS 473
Query: 460 SDITP 464
++ P
Sbjct: 474 NNSKP 478
Score = 68.4 bits (167), Expect = 2e-12
Identities = 49/318 (15%), Positives = 84/318 (26%), Gaps = 68/318 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W +N Q + R +Q + L + +R+DT Y +N + S V
Sbjct: 144 WWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARR-SDSVILNVL 200
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLN 283
+ + G+ +AA + S + +T L
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSC---HAASNPPAQYSW------FVNGTFQQSTQELF 251
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
I N +SG Y +A N + PP +T +
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPK-----PFITSNN--------- 297
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
V + +T + +W VN + R++
Sbjct: 298 --------------------SNPVEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQ 336
Query: 404 FETSENQ-TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVSD 461
T+ D G Y + N + D S + V+ P P +
Sbjct: 337 LSNDNRTLTLLSV----TRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 462 ITPES-----CSLSWKPP 474
P C + PP
Sbjct: 393 YRPGVNLSLSCHAASNPP 410
Score = 66.9 bits (163), Expect = 8e-12
Identities = 45/309 (14%), Positives = 84/309 (27%), Gaps = 67/309 (21%)
Query: 162 WVKLSEPFLNH---GWSINGQVCQIGGRAD-VQTTKSETVLDIPFCSRSDTGHYSLTLEN 217
W K N G+ I Q G + L I ++DTG Y+L +
Sbjct: 33 WYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIK 92
Query: 218 NL-GTATASAHVTGTEFT---------DNNVHEGKAYEYRVSAVNAAGTEKPKISL--DA 265
+ A+ V + A + + + +
Sbjct: 93 SDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEP---ETQDATYLWWVNNQ 149
Query: 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
+ + +++ +L + N R D+ YK E +N +D ++ V
Sbjct: 150 SLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA---- 205
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
P I+ + + +GE ++ + P
Sbjct: 206 ----------------------------PTIS----PLNTSYRSGENLNLSCHAASNPPA 233
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
W VNG + +SGSYT Q N+ + +
Sbjct: 234 QYSWFVNGTFQQSTQELFI------------PNITVNNSGSYTCQAHNSDTGLNRTTVTT 281
Query: 446 VVDKPSPPQ 454
+ PP+
Sbjct: 282 ITVYAEPPK 290
Score = 65.4 bits (159), Expect = 2e-11
Identities = 35/289 (12%), Positives = 77/289 (26%), Gaps = 81/289 (28%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W I+G + Q L I + ++G Y+ N+ + + T
Sbjct: 415 WLIDGNIQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL----DALIGKRIKEFVTST 278
+ V + A + + + R++ +++
Sbjct: 464 AELPKPSISSNNSKPVEDKDAVAFTCEP---EAQNTTYLWWVNGQSLPVSPRLQ--LSNG 518
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+L + N R D+ Y +N + +D + + V+ P
Sbjct: 519 NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP------------------- 559
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
+P D + L+G ++ + P P W +NG
Sbjct: 560 ----------DTPIISPP--------DSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ 601
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ ++G+Y + N + S +
Sbjct: 602 HTQVLFIAKI------------TPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 50.3 bits (120), Expect = 1e-06
Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 42/187 (22%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKN-DYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
+ ASL I+N ++ D+G Y + D + A + V + P+ +
Sbjct: 65 EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS------ISSN 118
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
S V + T + T +W VN
Sbjct: 119 NSK------------------------------PVEDKDAVAFTCEPETQD-ATYLWWVN 147
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451
+ R++ S + R D+ SY + N V + S S + V+ P
Sbjct: 148 NQSLPVSPRLQL--SNGNRTLTLFNVTR-NDTASYKCETQNPVSARRSDSVILNVLYGPD 204
Query: 452 PPQGPLD 458
P
Sbjct: 205 APTISPL 211
Score = 35.3 bits (81), Expect = 0.048
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 16/103 (15%)
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT---- 422
V G+E + V + W I + Q + R
Sbjct: 11 VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 423 -----------DSGSYTIQLVNTV-GSDSASCKVYVVDKPSPP 453
D+G YT+ ++ + ++ A+ + V + P
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP 113
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 68.6 bits (168), Expect = 1e-14
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSCTVP 75
P +L ++ +D + L WT P + ++++ ++ + VP E S +
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAP----DAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLT 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
GL G Y + V
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94
Score = 34.7 bits (80), Expect = 0.010
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 452 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
P L VS++T +S LSW P + +++++ Y+ + V +
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQ-YQESEKVGE 44
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 68.2 bits (167), Expect = 2e-14
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE-MKDKTGNWEKAVVVPAGETSCTVP 75
P L TD D D + + W P ++ Y V + G E E + +
Sbjct: 5 PKGLAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQ 60
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTA 103
GL G Y V A++ + T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
Score = 36.2 bits (84), Expect = 0.003
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 451 SPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
P+G L +D+ +S ++W+ P ++ Y V G+ +LF + +
Sbjct: 3 DRPKG-LAFTDVDVDSIKIAWESP----QGQVSRYRVTYSSPEDGIHELFPAPDGEED 55
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 71.4 bits (175), Expect = 2e-14
Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVP 66
+ E +PTDL D + L+WTP S I GY + + G V
Sbjct: 17 RGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVD 73
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAP-IVAKPKNL 112
+ TV GL G Y V V G + T V P +L
Sbjct: 74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDL 120
Score = 69.1 bits (169), Expect = 1e-13
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGETS 71
PTDL T+ D + + W PP +T ++V + + + +
Sbjct: 113 AVPPPTDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRYSPVKNEEDVAELSISPSDNA 169
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEAS 99
+ L+ G Y V +V
Sbjct: 170 VVLTNLLPGTEYVVSVSSVYEQHESTPL 197
Score = 41.0 bits (96), Expect = 3e-04
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 433 NTVGSDSASCKVYVVDKPSPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
++ S + P L DIT S L W P S I Y +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVV 59
Query: 491 ESATG 495
+ G
Sbjct: 60 AAGEG 64
Score = 37.1 bits (86), Expect = 0.006
Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 50/189 (26%)
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGE 371
+ PT + + +T S+ + W P + I G
Sbjct: 17 RGSHMEVPQPTD-LSFVDITDSSIGLRWTPL---NSSTIIG------------------- 53
Query: 372 EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL 431
+ ITV +G P V+ + Y + D Y I +
Sbjct: 54 -YRITVVAAGEGIPIFEDFVDS---------------SVGYYTVTGLEPGID---YDISV 94
Query: 432 --VNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
V G +S + PP L ++I P++ ++W PP +TN++V
Sbjct: 95 YTVKNGG-ESTPTTLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVR- 148
Query: 490 YESATGVSD 498
Y D
Sbjct: 149 YSPVKNEED 157
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 73.6 bits (180), Expect = 2e-14
Identities = 39/302 (12%), Positives = 70/302 (23%), Gaps = 60/302 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W N + G + + + L + + D+G Y T N S +
Sbjct: 59 WHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN 118
Query: 230 ---GTEFTDNNVH----EGKAYEYRVSAVNAAGTEKPKISL----DALIGKRIKEFVTST 278
F + KI L K
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
T L + + +D+G Y+ + +I + +
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET------------- 225
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT---VPFSGRPKPTPIWTVNG-- 393
P I S L ++ G TI +G P T +W
Sbjct: 226 --------------IPVIISPLK--TISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 394 --DEVSPDGRIKFETSENQTIYRNKSAK--------RATDSGS-YTIQLVNTVGSDSASC 442
+ P GR+ + + + D + + NT+ +
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
Query: 443 KV 444
V
Sbjct: 330 TV 331
Score = 62.8 bits (152), Expect = 7e-11
Identities = 30/264 (11%), Positives = 64/264 (24%), Gaps = 59/264 (22%)
Query: 212 SLTLENNLGTATA-SAHVTGTEFTDNNVHEGKAY----EYRVSAVNAAGTEKPKIS---- 262
TL+ T A S G + EG+ + A+ + + ++
Sbjct: 3 PFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKN 62
Query: 263 -LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + + +L + ++++DSG Y +N D IE+ V
Sbjct: 63 DSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF 122
Query: 322 TGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP--- 378
I Y + + P
Sbjct: 123 LPFISYPQ------------------------------------ILTLSTSGVLVCPDLS 146
Query: 379 --FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
+ W + + D + + A D+G Y L
Sbjct: 147 EFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVAL--EDAGYYRCVLTFAHE 204
Query: 437 SDSASC------KVYVVDKPSPPQ 454
+ ++ + + P
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPV 228
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 68.6 bits (168), Expect = 2e-14
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 14 PGKPTDLEATDWDKDH--VDLQWTPPISDGGSPITGYVVE---MKDKTGNWEKAVVVPAG 68
P DL + V + W PP+ G IT Y++ K+ + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ + L Y F+++A N+ G G S P
Sbjct: 68 RLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 34.7 bits (80), Expect = 0.014
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 450 PSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
S P+ + + P + +SW+PPL+ G IT Y++ Y + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILF-YTLDKNIPIDDWIMETISG 66
Query: 509 GSLMT 513
L
Sbjct: 67 DRLTH 71
Score = 28.9 bits (65), Expect = 1.5
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 319 GPPTGPIDYT----TVTPESVSMSWKPPVDDGGTPITG-----APKITSDLSIRDMTVLA 369
GP + P D T P +V +SW+PP++ G IT + M ++
Sbjct: 7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETIS 65
Query: 370 GEEFTITVP 378
G+ T +
Sbjct: 66 GDRLTHQIM 74
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 72.5 bits (178), Expect = 2e-14
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P K + K+ L+W P+ I Y + + GN V V + T
Sbjct: 195 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA-VNVDSSHT 253
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+ L Y ++ A G + + T
Sbjct: 254 EYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286
Score = 59.4 bits (144), Expect = 6e-10
Identities = 17/100 (17%), Positives = 27/100 (27%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV 63
+ I + P + + ++WT P I + V +
Sbjct: 91 VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQ 150
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ L E + Y V V A GPG A
Sbjct: 151 EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKA 190
Score = 55.2 bits (133), Expect = 1e-08
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 30 VDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
V L W P + I Y V + + + T TV + + Y +
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN---YTVNATKLTV--NLTNDRYLATLT 79
Query: 89 AVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
N G +A+ T P ++ D
Sbjct: 80 VRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKD 114
Score = 44.0 bits (104), Expect = 6e-05
Identities = 32/228 (14%), Positives = 59/228 (25%), Gaps = 53/228 (23%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID--YTTVTP 332
V +T ++N+ N + + +N G + + + T P+
Sbjct: 60 VNATKLTVNLTNDRY----LATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKD 114
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVN 392
+ + W P + I W V
Sbjct: 115 NMLWVEWTTPRESVKKYILE------------------------------------WCVL 138
Query: 393 GDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSDSASCKVYVVDKP 450
D+ + E Y + + Y I + V G + + K
Sbjct: 139 SDKAPCITDWQQEDGTVHRTYLRGNLAESK---CYLITVTPVYADG-PGSPESIKAYLKQ 194
Query: 451 SPPQGP--LDVSDITPESCSLSWKP-PLDDGGSPITNYVVEKYESATG 495
+PP + + L W P+D I NY + Y + G
Sbjct: 195 APPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF-YRTIIG 241
Score = 34.0 bits (78), Expect = 0.081
Identities = 21/181 (11%), Positives = 43/181 (23%), Gaps = 54/181 (29%)
Query: 320 PPTGPIDYTTVTPE------SVSMSWKP-PVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
P P + + P +V + WK P + I
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILD-------------------- 43
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ +T+ + + + K + Y T+ +
Sbjct: 44 YEVTL----TRWKSHLQNYTVNA------TKLTVNLTNDRYL------------ATLTVR 81
Query: 433 NTVGSDSASCKVYVVDKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
N VG A+ +D+ + W P + + Y++E
Sbjct: 82 NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILEWCV 137
Query: 492 S 492
Sbjct: 138 L 138
Score = 32.5 bits (74), Expect = 0.26
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 8/45 (17%)
Query: 452 PPQGPLDV-------SDITPESCSLSWKP-PLDDGGSPITNYVVE 488
P + L WK P + I +Y V
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVT 47
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 68.1 bits (167), Expect = 2e-14
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-T 411
AP IT +L + T GE ++ SG P P +W + + + D I + T
Sbjct: 10 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
I R R D G YT Q + +G +
Sbjct: 68 IRR----VRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 35.0 bits (81), Expect = 0.011
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W + + + + + L I + D G Y+ + LG A A
Sbjct: 44 WFKDNE--TLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 34.6 bits (80), Expect = 0.016
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 253 AAGTEKPKIS--LDALIGKRIKE----FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
A+G P+I D + + E + +L I+ ++D G+Y +A + G
Sbjct: 34 ASGNPPPQIMWFKD---NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA 90
Query: 307 MADIEVVVVSKPGPP 321
+ ++
Sbjct: 91 KVEAFFIIEGAQEKT 105
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 67.8 bits (166), Expect = 3e-14
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGR---I 402
G + +GAP L + + G T T +G PKP W +G ++SP I
Sbjct: 1 GSSGSSGAPFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI 58
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + +++ S D G+YTI N G S + ++ V S P
Sbjct: 59 QRDLDGTCSLHTTAS--TLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 39.3 bits (92), Expect = 3e-04
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
AG KPKI + + T SL+ S D G Y I A N G
Sbjct: 32 VAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGR 91
Query: 306 DMADIEVVVVSKPGPPT 322
++V + P+
Sbjct: 92 ISCTGRLMVQAVNSGPS 108
Score = 33.5 bits (77), Expect = 0.037
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 174 WSINGQVCQIGGRADVQTTKSET----VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W +G+ QI ++D T + + L + D G+Y++ N G + + +
Sbjct: 42 WFKDGK--QISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 67.8 bits (166), Expect = 3e-14
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 348 TPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407
+ T A +I + R MTV GE + G P PT W G +S R + T+
Sbjct: 9 SKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT 66
Query: 408 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ ++ + S +A+D G+Y++ + N+ G A + +
Sbjct: 67 KYKSTFEISSV-QASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 45.4 bits (108), Expect = 2e-06
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W GQV R V TTK ++ +I SD G+YS+ +EN+ G A +T
Sbjct: 48 WLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/47 (19%), Positives = 18/47 (38%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
R + T ++ I + D G Y + +N G A+ + +
Sbjct: 58 SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 74.0 bits (181), Expect = 4e-14
Identities = 35/295 (11%), Positives = 64/295 (21%), Gaps = 67/295 (22%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG--- 230
W + G + + + + + N LG
Sbjct: 173 WVLCDSQ----GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Query: 231 ---TEFTDNNVHEGKAYEYRVSAVNAAGTEKPKI-----------SLDALIGKRIKEFVT 276
T + G+ R AV+ + +
Sbjct: 229 TPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
+ + R D+G Y + V +V K + T S
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKG--------FINATNSS-- 333
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
D + EEF +V F P+ WT +
Sbjct: 334 --------------------------EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF 367
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
P + + + + + N G Y N + + + KP
Sbjct: 368 -PCEQKGLDNGYSISKFCNH----KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ 417
Score = 66.6 bits (162), Expect = 6e-12
Identities = 30/316 (9%), Positives = 76/316 (24%), Gaps = 76/316 (24%)
Query: 174 WSINGQV------CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT---- 223
W + + ++ + +T + +R+DTG+Y+ + + +
Sbjct: 262 WELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTI 321
Query: 224 -ASAHVTGTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTST 278
+ T +++ + + + + + V + + + K
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRF---KAYPQIRCTWTFSRKSFPCEQKGLDNGY 378
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
S++ + + G Y A+ND + + K
Sbjct: 379 --SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK--------------------- 415
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP 398
P++ + + G P P+ W D+
Sbjct: 416 ---------------PQV----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPN 450
Query: 399 DGRIKFETSENQTIYRNKSAK----------RATDSGSYTIQLVNTVGSDSASCKVYVVD 448
E N+ R + A N++G+ + +
Sbjct: 451 CTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510
Query: 449 KPSPPQGPLDVSDITP 464
Q
Sbjct: 511 PFPFIQDGGTKHHHHH 526
Score = 60.5 bits (146), Expect = 7e-10
Identities = 36/294 (12%), Positives = 74/294 (25%), Gaps = 55/294 (18%)
Query: 168 PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
++ W D+Q + + I + + G Y L +++ T
Sbjct: 76 GNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTETQAGEYLLFIQSEATNYTILFT 134
Query: 228 VTGTE---FTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASL 282
V+ +T + K + +P + L G+ KE +
Sbjct: 135 VSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVV-KK 193
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
K + A+N+ G + + + +++
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT------------------------ 229
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGR 401
P+ T + + + GE I W + +
Sbjct: 230 -----------PQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Query: 402 IKFETSENQTIYRNK-----SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ T S+ D+G YT S V +V+K
Sbjct: 275 FEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
Score = 59.7 bits (144), Expect = 1e-09
Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ + + V T+ V + +W ++ + ++
Sbjct: 48 SSGTVYEA--AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
K T +G Y + + + + + V + +
Sbjct: 106 VILKM--TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Score = 52.8 bits (126), Expect = 2e-07
Identities = 22/264 (8%), Positives = 55/264 (20%), Gaps = 55/264 (20%)
Query: 204 SRSDTGHYSLTLENNLGTATA---SAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPK 260
S + Y + E+ A + T E V + +V
Sbjct: 23 SVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV---DAPGNIS 79
Query: 261 IS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
+L + + S+ I +G Y + +++ V + +
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139
Query: 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376
T+ + +
Sbjct: 140 TL--------LYTLRRPYF-------------------------------RKMENQDALV 160
Query: 377 VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG 436
P+P W + + + + ++ N +G
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL-----FGTDIRCCARNELG 215
Query: 437 SD-SASCKVYVVDKPSPPQGPLDV 459
+ + + + P L +
Sbjct: 216 RECTRLFTIDLNQTPQTTLPQLFL 239
Score = 44.7 bits (105), Expect = 5e-05
Identities = 17/171 (9%), Positives = 39/171 (22%), Gaps = 32/171 (18%)
Query: 168 PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
P + W+ + + + + + + G Y EN+ T
Sbjct: 354 PQIRCTWTFSRKSFPCEQK----GLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFT 409
Query: 228 VTGTEFTDNNVHEG-KAYEYRVSAV---NAAGTEKPKIS----------------LDALI 267
+ + + ++ + G P +
Sbjct: 410 LN--------IRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWN 461
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
K ++ +S + S + K A N G I +
Sbjct: 462 RKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 67.9 bits (166), Expect = 4e-14
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P++ S E I G P PT W NG + I E + I
Sbjct: 8 PPRVVSLEE-----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 413 YRN----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP-----PQGPLDVS 460
++G+YT+ N +G+ + + + + +P P P P+ V+
Sbjct: 63 SEGCLLFNKPTHY-NNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118
Score = 53.3 bits (128), Expect = 6e-09
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP-----PTGP 324
+ + L ++G Y + AKN G I + +P P PT P
Sbjct: 55 EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPP 114
Query: 325 IDYT 328
I T
Sbjct: 115 ITVT 118
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV----LDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W NGQ + V+ + + L + + G+Y+L +N LGTA + +
Sbjct: 39 WLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 67.0 bits (164), Expect = 5e-14
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT LE + + W S ++ Y + + GN + VP ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
T+ GL G Y V A + S + I +
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 35.1 bits (81), Expect = 0.007
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVS 497
S P L+V TP S +SW S ++ Y + Y G S
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAS----SSSVSYYRIT-YGETGGNS 46
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 71.8 bits (176), Expect = 5e-14
Identities = 51/278 (18%), Positives = 84/278 (30%), Gaps = 58/278 (20%)
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT-------GTEFTDNNVHE 240
V + L I + D G Y + GT A+ +V T E
Sbjct: 55 VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114
Query: 241 GKAYEYRVSAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296
G+ + P I +I K+ F+ + L I+ + D G Y+
Sbjct: 115 GEDAVIVCDV---VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 297 IEAKNDYG--IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAP 354
E + I+ DI+V+V P
Sbjct: 172 CEGRILARGEINFKDIQVIVNV------------------------------------PP 195
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK---FETSENQT 411
+ + SI + T G+ T+ G P+PT WT +G+ + + + ++
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ K D Y N G AS + V K
Sbjct: 256 LTIRNVDK--NDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 59.9 bits (145), Expect = 4e-10
Identities = 41/240 (17%), Positives = 69/240 (28%), Gaps = 55/240 (22%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+++L I N+ D+GIYK + G A + V + K P
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL--------MFKNAPT---- 108
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
GE+ I PT IW G +V
Sbjct: 109 --------------------------PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP----P 453
++F N + + + K+ TD G+Y + + + V+ P
Sbjct: 143 LKKDVRFIVLSNNYL-QIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQAR 200
Query: 454 QGPLDVSDITPES----CSLSWKPP------LDDGGSPITNYVVEKYESATGVSDLFISK 503
Q ++ + +S C P D EK+ + S+L I
Sbjct: 201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN 260
Score = 52.6 bits (126), Expect = 9e-08
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 28/165 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W G+ + + L I ++D G Y +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGKRIK 272
+ + G+ S +A G +P +S ++ K
Sbjct: 193 VPPTVQARQSIVNATANLGQ------SVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ ++ L I+N + D Y A+N G A I + V +K
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 39.1 bits (91), Expect = 0.002
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPI-WT-VNGDEVSP-DGRIKFETSENQT----IYRN 415
+ GE +G K I W NG+++SP RI +++ + IY
Sbjct: 10 SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN- 68
Query: 416 KSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
D+G Y + G+ A+ V + K P
Sbjct: 69 ---ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE 111
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 69.8 bits (171), Expect = 5e-14
Identities = 35/196 (17%), Positives = 59/196 (30%), Gaps = 51/196 (26%)
Query: 253 AAGTEKPKIS--LDALIGKRIKEF-----VTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
+P+IS + IK F + L I + D GIY A N G
Sbjct: 31 VESYPQPEISWTRN---KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + V PKIT ++
Sbjct: 88 AVESCGALQVKMK-----------------------------------PKITRPPI--NV 110
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSG 425
++ G + + G PKP+ W + + RI S + I+ + D+G
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN----VQKEDAG 166
Query: 426 SYTIQLVNTVGSDSAS 441
Y N++G+ +
Sbjct: 167 QYRCVAKNSLGTAYSK 182
Score = 47.0 bits (112), Expect = 3e-06
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP IT+ + + L E T P+P WT N + ++ EN +
Sbjct: 7 APVITT--PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQL 63
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
S +D G Y N VG + + V KP + P++V
Sbjct: 64 LTILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111
Score = 38.9 bits (91), Expect = 0.001
Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 26/158 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT--- 229
W+ N + ++ ++ +L I SD G Y T N +G A + +
Sbjct: 41 WTRNKILIKLFDT-RYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99
Query: 230 GTEFT----DNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIKE---FVTS 277
+ T + + EG AV G KP +S ++E
Sbjct: 100 KPKITRPPINVKIIEGL------KAVLPCTTMGNPKPSVSWIKG---DSALRENSRIAVL 150
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ SL I N ++D+G Y+ AKN G + + + V
Sbjct: 151 ESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 67.0 bits (164), Expect = 6e-14
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD 399
K D G+P P R + V++G E + G P P +W G +++
Sbjct: 4 KASSGDQGSP----PCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS 57
Query: 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
R+ F + +A TD+G Y + N G A+ V V++ P
Sbjct: 58 ERLSFPADGAEHGLLLTAAL-PTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 38.1 bits (89), Expect = 8e-04
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+R+ L + ++ D+G+Y A+N G A V V+ P
Sbjct: 57 SERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 37.4 bits (87), Expect = 0.001
Identities = 16/56 (28%), Positives = 20/56 (35%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W GQ R +E L + +D G Y N G A A+A VT
Sbjct: 47 WEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT 102
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 66.5 bits (163), Expect = 7e-14
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 349 PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
P APKI + + TV G + V G+P P W NG ++ RI + E
Sbjct: 1 PSMEAPKIFERI--QSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE 58
Query: 409 NQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ I DS S ++ +N G S+ + V K
Sbjct: 59 DNVCELVIRD----VTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 36.5 bits (85), Expect = 0.003
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ + L I++ +DS ++A N G + ++V +K
Sbjct: 50 DRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 33.0 bits (76), Expect = 0.039
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 174 WSINGQVCQIGGRADVQTTKSET---VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W NG +I + E L I + D+ + N G ++ A +
Sbjct: 39 WYKNGV--KIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 67.6 bits (165), Expect = 1e-13
Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 2/139 (1%)
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
+ + V + P T + DM V+ G G P P
Sbjct: 15 TSPINANKVENEDAFLEEVAEEKPHVKPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPE 72
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+W + + V + + E S D YT + VN++G + + ++ V
Sbjct: 73 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 447 VDKPSPPQGPLDVSDITPE 465
+G + + E
Sbjct: 133 ETMGKEGEGEGEGEEDEEE 151
Score = 39.8 bits (93), Expect = 4e-04
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
SL I D Y +A N G E++V + G + E
Sbjct: 97 NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEEDEEE 151
Score = 36.4 bits (84), Expect = 0.007
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 28/143 (19%)
Query: 88 RAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKS 147
+NA + + ++ P + T+ D+++ G + FD K
Sbjct: 16 SPINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFDCK---------- 64
Query: 148 PLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSET-VLDIPFCSRS 206
V P W + + + + L I
Sbjct: 65 ------VEGY----------PDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD 108
Query: 207 DTGHYSLTLENNLGTATASAHVT 229
D Y+ N+LG AT +A +
Sbjct: 109 DDAKYTCKAVNSLGEATCTAELL 131
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 70.4 bits (172), Expect = 1e-13
Identities = 40/294 (13%), Positives = 76/294 (25%), Gaps = 61/294 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + L + +TG Y T + + + H+
Sbjct: 34 WDGPISP-----YWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDP 88
Query: 230 ----GTEFTDNNVHEGKAYEY--RVSAVNAAGTEKPKISL---DALIGKRIKEFVTSTTA 280
+ V EG+ ++ K +SL R + S
Sbjct: 89 AHSWNLLAQEVTVVEGQEAVLPCLITDPAL----KDSVSLMREGGRQVLRKTVYFFSPWR 144
Query: 281 SLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
I+ + DS Y + + I + V P
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP------------------ 186
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EV 396
P+I + S + + GE I + + GD E+
Sbjct: 187 --------------PQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI 230
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + + + D+G Y+ N VG+ +A+ VV+
Sbjct: 231 PLNSDFQDNYYKKVRALSLNAV-DFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 47.6 bits (113), Expect = 5e-06
Identities = 28/189 (14%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
I S ++L +N+ K++G Y+ D I + V
Sbjct: 38 ISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA-------- 89
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKP 385
+++TV+ G+E + + K
Sbjct: 90 ---------HSWNLLA--------------------QEVTVVEGQEAVLPCLITDPALKD 120
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKV 444
+ G + F + I R + DS +Y +VN S S +
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRK---AKVLDSNTYVCKTMVNGRESTSTGIWL 177
Query: 445 YVVDKPSPP 453
V P
Sbjct: 178 KVNRVHPEP 186
Score = 36.8 bits (85), Expect = 0.010
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ- 410
AP I ++ V GE T+ +G + W SP + E+ +
Sbjct: 3 PAPVIEPSGP--ELVVEPGETVTLRCVSNG----SVEWDGPI---SPYWTLDPESPGSTL 53
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452
T ++G+Y + + S + +YV D
Sbjct: 54 TTRN----ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 66.0 bits (161), Expect = 1e-13
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
E L+ + ++L W Y + + ++ W + V+ E
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL----EPRV 64
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L TY +VR + GPG S
Sbjct: 65 LLTKLQPDTTYIVRVRTLTPLGPGPFSPD 93
Score = 36.7 bits (85), Expect = 0.003
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
S L + P L+W +Y +
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ 51
Score = 27.4 bits (61), Expect = 4.8
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 1/39 (2%)
Query: 315 VSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPITG 352
S +G + P + ++W
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLS 43
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 70.2 bits (172), Expect = 1e-13
Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
E P DL T + + L WT PI Y + +G + V VP TS
Sbjct: 196 ELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGISSE-VTVPRDRTSY 250
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
T+ L G Y + A S A
Sbjct: 251 TLTDLEPGAEYIISITAERGRQQSLESTVDA 281
Score = 69.5 bits (170), Expect = 2e-13
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
PT + D ++WTPP + + +++ G + + +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPP----RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQY 70
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNL 112
+V L G Y+ + AV +AS PKNL
Sbjct: 71 SVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNL 111
Score = 60.6 bits (147), Expect = 2e-10
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG---ET 70
P +L +DL+W + Y V G V+VP G T
Sbjct: 105 IDAPKNLRVGSRTATSLDLEWDNS----EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTT 160
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIV-AKPKNL 112
T+ L+ G Y + AV + + A P++L
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDL 203
Score = 40.6 bits (95), Expect = 7e-04
Identities = 26/234 (11%), Positives = 58/234 (24%), Gaps = 62/234 (26%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV---------- 367
PT I V+ + W PP + + + +
Sbjct: 15 IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQ 73
Query: 368 --LAGEEFTITV------------PFSGRPKPTP-----IWTVNGDEVS-----PDGRIK 403
G + +++ + + + + + +
Sbjct: 74 ALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQ 133
Query: 404 F-----------ETSENQTIYRNKSAKRATDSG-----SYTIQLV---NTVGSDSASCKV 444
+ E + T + Y + + N+ S A+
Sbjct: 134 EYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 193
Query: 445 YVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
P+ L V+ + S SL W PI +Y + + ++G+S
Sbjct: 194 RTE--LDSPRD-LMVTASSETSISLIWTKAS----GPIDHYRIT-FTPSSGISS 239
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
GS S + P + V D++ + W PP + Y + E
Sbjct: 1 GSPGISGGGGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKT 59
Query: 496 VSDLFISKSEVKTGSL 511
L S+ +L
Sbjct: 60 TFRLQPPLSQYSVQAL 75
Score = 27.9 bits (62), Expect = 7.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 229 TGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
T+ T ++ G Y +SAV + P
Sbjct: 158 PTTKTTLTDLVPGTEYGVGISAVMNSKQSIP 188
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 66.4 bits (162), Expect = 1e-13
Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 3/91 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPIT---GYVVEMKDKTGNWEKAVVVPAGET 70
P ++A D V + W + Y V + K
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
S T GL Y+F V S
Sbjct: 79 SYTATGLKPNTMYEFSVMVTKNRRSSTWSMT 109
Score = 29.1 bits (65), Expect = 1.3
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 220 GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
S T +T + YE+ V +
Sbjct: 67 SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRS 103
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 66.1 bits (161), Expect = 2e-13
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGETSC 72
P DLE + + W Y + + GN + VP +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG----RGSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ GL G Y V AV P T
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 34.9 bits (80), Expect = 0.011
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSD 498
P+ L+V TP S +SW Y + Y G S
Sbjct: 4 SDVPRD-LEVVAATPTSLLISWDSG----RGSYQYYRIT-YGETGGNSP 46
Score = 26.8 bits (59), Expect = 7.5
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPP 342
P ++ TP S+ +SW
Sbjct: 4 SDVPRD-LEVVAATPTSLLISWDSG 27
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 71.0 bits (173), Expect = 2e-13
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 37/313 (11%)
Query: 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVS 249
+ L I D+ Y +E+ T +D ++ +G++ +
Sbjct: 61 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ-LLVFGLTANSDTHLLQGQSLTLTLE 119
Query: 250 AVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
+ P + + + +L++ +DSG + +
Sbjct: 120 S---PPGSSPSVQC-----RSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
I++VV++ + E V S+ +G
Sbjct: 172 IDIVVLAFQKASS---IVYKKEGEQVEFSFPLAFTVEKLTGSG----------------- 211
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVS-----PDGRIKFETSENQTIYRNKSAKRATDS 424
E + K + + EVS D +++ + ++ + S
Sbjct: 212 --ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS 269
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQG-PLDVSDITPESCSLSWKPPLDDGGSPIT 483
G+ T+ L G + V+ + +V T LS K +
Sbjct: 270 GNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR 329
Query: 484 NYVVEKYESATGV 496
V G+
Sbjct: 330 EKAVWVLNPEAGM 342
Score = 32.1 bits (72), Expect = 0.46
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 17/137 (12%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY-RNKSAKRATD 423
+ G+ +T S + W + + F T + R S + D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 424 SGSYTIQLVNTVGSDSA--SCKV---------YVVDKPSPPQGPLDVSDITPESCSLSWK 472
G++ + + N DS C+V V + L +
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 123
Query: 473 PP-----LDDGGSPITN 484
G I
Sbjct: 124 SSPSVQCRSPRGKNIQG 140
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 65.4 bits (160), Expect = 2e-13
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
G P+ +M++ G + SG P P W +NG V D K SE
Sbjct: 4 GPPRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
RA+D+G+Y N G + + ++ V+ K
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 34.6 bits (80), Expect = 0.011
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 174 WSINGQVCQIGGRADVQTTKS-ETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W +NG+ Q + ++ L SD G Y+ +N G AT + +
Sbjct: 39 WYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
Score = 34.2 bits (79), Expect = 0.015
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
SL + D+G Y AKN G +++ V++K
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 69.2 bits (169), Expect = 2e-13
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 44/190 (23%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
SL +++ V D G Y +N +G + V+ + +
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS-------------------PHR 113
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT----VNGDEV 396
P + G P + T + G + +P W VNG +V
Sbjct: 114 PIL------QAGLPA--------NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV 159
Query: 397 SPDGRIKFETSENQTIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
PDG ++ ++ D G Y + N +G + + V
Sbjct: 160 GPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Query: 450 PSPPQGPLDV 459
+ + ++
Sbjct: 220 RAAEEELVEA 229
Score = 62.6 bits (152), Expect = 3e-11
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 351 TGAPKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
TGAP T + + + V A P +G P P+ W NG E + RI
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 409 NQ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+Q + +S +D G+YT + N GS + + V+++
Sbjct: 69 HQQWSLVM---ESVVP-SDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 113
Score = 48.4 bits (115), Expect = 2e-06
Identities = 27/197 (13%), Positives = 48/197 (24%), Gaps = 43/197 (21%)
Query: 174 WSINGQVCQIGGRADVQTTKSE-TVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--- 229
W NG+ + R + + L + SD G+Y+ +EN G+ + +
Sbjct: 49 WLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE 108
Query: 230 ---------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--------------- 262
+ G +P I
Sbjct: 109 RSPHRPILQAGLPANQTAVLGS------DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 162
Query: 263 --LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ K L + N +D G Y A N G+ + V
Sbjct: 163 GTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA 222
Query: 321 PTGPIDYTTVTPESVSM 337
+ E+ S+
Sbjct: 223 EEELV----EADEAGSV 235
Score = 36.5 bits (84), Expect = 0.012
Identities = 11/68 (16%), Positives = 24/68 (35%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W+K E + + ++ +++ L + S D G Y N +G
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV 207
Query: 222 ATASAHVT 229
A + ++
Sbjct: 208 AEKAFWLS 215
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 71.0 bits (174), Expect = 2e-13
Identities = 58/294 (19%), Positives = 90/294 (30%), Gaps = 64/294 (21%)
Query: 174 WSINGQ-VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT-ASAHVTGT 231
W N Q R Q T + L I +SD G+Y+ + N +
Sbjct: 137 WIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLI 193
Query: 232 EFTDNNVHEGKAYEYRVSAVN--------------AAGTEKPKISLDALIGKRI--KEFV 275
D + E + A G P I GK I K
Sbjct: 194 LRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARR 253
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESV 335
+ L I N ++D+G Y+ A+N G ++A ++ ++P
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP--------NWVQIIN-- 303
Query: 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 395
D+ V E +GRPKPT W NGD
Sbjct: 304 ----------------------------DIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ RI+ E T+ +D+G Y N G +S ++ V+ +
Sbjct: 336 LLTRDRIQI---EQGTLNITIVNL--SDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 68.3 bits (167), Expect = 1e-12
Identities = 48/300 (16%), Positives = 91/300 (30%), Gaps = 48/300 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIP-FCSRSDTGHYSLTLENNLGTATA-SAHVT-- 229
W +NG + D + + + L I D G Y N+ GT + A +
Sbjct: 42 WKLNGT--DVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA 99
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTSTTA 280
+ +V G+ + + + + + + FV+ T
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPP--PHSGELSYAWIFNEYPSYQDNRRFVSQETG 157
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+L I + D G Y N GPPT + + V ++
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNH---------KVLGPPT----PLILRNDGVMGEYE 204
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG 400
P + P+ + G + G P PT +W +
Sbjct: 205 PKI------EVQFPE--------TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK 250
Query: 401 RIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
+ +++ I + D+GSY N+ G + A ++ +P+ Q D+
Sbjct: 251 ARRHKSNGILEI----PNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIH 306
Score = 40.2 bits (94), Expect = 0.001
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 353 APKITSDL-SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
P + + ++ ++ G PKP W +NG +V ++ +
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDV 459
+ N + + D+G+Y N+ G+ S K+ +
Sbjct: 65 LINNPN--KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRST 111
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 65.2 bits (159), Expect = 2e-13
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCTVP 75
P L V L W P + T Y+V E+ V G +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
GL G Y+ V+++ EA A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 36.7 bits (85), Expect = 0.003
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P PP L ++ +TP + L+W+P + T+Y+V ++
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPK 48
Score = 29.4 bits (66), Expect = 0.99
Identities = 12/61 (19%), Positives = 21/61 (34%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTI 375
S P PP + VTP +V ++W+P + +P + E +
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVLL 65
Query: 376 T 376
Sbjct: 66 D 66
Score = 27.9 bits (62), Expect = 3.1
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 221 TATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
V E + + G+ YE V ++ +
Sbjct: 51 EEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEA 89
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 64.8 bits (158), Expect = 4e-13
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P DLEA + L WT P GY++ G + +++P G TS
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQT-QEILLPGGITSH 61
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTA 103
+ GL +Y +++A+ +
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 92
Score = 38.2 bits (89), Expect = 7e-04
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG 495
P+ L+ ++TP + L+W P Y++ + + G
Sbjct: 7 GLEAPRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLS-FHTPGG 47
Score = 26.7 bits (59), Expect = 7.2
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 205 RSDTGHYSLTLENNLGTA-TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP 259
Y L+ G T + +Y R+ A+ P
Sbjct: 32 PVRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPP 87
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 67.5 bits (165), Expect = 4e-13
Identities = 35/215 (16%), Positives = 56/215 (26%), Gaps = 43/215 (20%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYG 304
A G P I + + + L I+ D Y+ A+N G
Sbjct: 30 ARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG 89
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++VS + +G G P IT
Sbjct: 90 ----------------------------DAVSADATLTIYEGDKTPAGFPVITQGPG--T 119
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
+ G +T G P P W N +V I R D
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN----SREEDQ 175
Query: 425 GSYTIQLVNTVGSDSASC-KVYVVDKPSPPQGPLD 458
G Y N++G++ + +YV + +
Sbjct: 176 GKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHH 210
Score = 55.2 bits (133), Expect = 6e-09
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQ- 410
P+I ++ V G + G P P+ +W NG +VS R
Sbjct: 6 PPEIIR--KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVDKPSPPQGP 456
+I R + + D Y N VG + SA + + + P G
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
Score = 41.7 bits (98), Expect = 2e-04
Identities = 34/178 (19%), Positives = 55/178 (30%), Gaps = 30/178 (16%)
Query: 174 WSINGQ-VCQIGGRADVQTTK-SETVLDI-PFCSRSDTGHYSLTLENNLGTA-TASAHVT 229
W NG+ V R V ++L I P + D Y EN +G A +A A +T
Sbjct: 40 WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT 99
Query: 230 --------------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKR 270
+ G + + A G P I +
Sbjct: 100 IYEGDKTPAGFPVITQGPGTRVIEVGH------TVLMTCKAIGNPTPNIYWIKNQTKVDM 153
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKPGPPTGPIDY 327
+ L I+NS +D G Y+ A+N G + + + V + +
Sbjct: 154 SNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHHH 211
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 64.5 bits (157), Expect = 5e-13
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 3/89 (3%)
Query: 17 PTDLEATDWDKDHVDLQWTPP---ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P ++A+ D + + W + Y V K K A S
Sbjct: 12 PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V GL Y+F V S
Sbjct: 72 VTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
Score = 27.9 bits (62), Expect = 2.9
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN---YVVEKYESATG 495
P P + S ++ ++ ++W IT+ Y V +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA 56
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 67.6 bits (165), Expect = 5e-13
Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 42/216 (19%)
Query: 253 AAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM-AD 309
A G + K I T+ L KD+G Y N++ +
Sbjct: 42 ATGHPFVQYQWFKM---NKEIPN---GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQW 95
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
++ V P +D + + +I + + ++
Sbjct: 96 SQLDVCDIPESFQRSVDGVSESK---------------------LQICVEPT--SQKLMP 132
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
G + G P P W N ++ + + +Y G+Y
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLE-HQGTYWC 182
Query: 430 QLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
+ N S + ++D+ + P + T +
Sbjct: 183 HVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 46.4 bits (110), Expect = 6e-06
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
KIT + VLAG+ + +G P W E+ + +
Sbjct: 18 GSKITVNPE--SKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHV- 74
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVSDITP 464
D+G Y ++ N + S ++ V D P Q +D +
Sbjct: 75 ---------KDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESK 118
Score = 46.4 bits (110), Expect = 7e-06
Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 40/168 (23%)
Query: 194 SETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT----------------------G 230
+ + L D G Y + NN + + +
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 231 TEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIK 285
E T + G + V A G+ P + + T +
Sbjct: 123 VEPTSQKLMPGS------TLVLQCVAVGSPIPHYQWFKN---ELPLTH---ETKKLYMVP 170
Query: 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
+ G Y ND + +++ + P + T +
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 64.4 bits (157), Expect = 5e-13
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
+ AP IT S + + I G PKP W NG ++ I +
Sbjct: 1 VHFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 410 QTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + ++G YT+ N G D + + P
Sbjct: 56 NHTEYHGCLQLDNPTHM-NNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 50.1 bits (120), Expect = 5e-08
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
T L + N ++G Y + AKN+YG D I + PG
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 174 WSINGQVCQIGGRADVQT-----TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHV 228
W NG + + T+ L + + + G Y+L +N G
Sbjct: 35 WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
Query: 229 T 229
Sbjct: 95 H 95
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 69.5 bits (170), Expect = 6e-13
Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 44/199 (22%)
Query: 253 AAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A+G P I+ + K + +L I N +DSG Y A N G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
I V V + P Y P+ ++ +
Sbjct: 305 ISVRVKAAP--------YWLDEPK------------------------------NLILAP 326
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTI 429
GE+ + +G PKPT W VNG+ + TI + + Y
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI--SSRAVYQC 384
Query: 430 QLVNTVGSDSASCKVYVVD 448
N G A+ V V+D
Sbjct: 385 NTSNEHGYLLANAFVSVLD 403
Score = 64.9 bits (158), Expect = 2e-11
Identities = 52/304 (17%), Positives = 79/304 (25%), Gaps = 48/304 (15%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCS----RSDTGHYSLTLENNLGTA-TASAHV 228
W+ N + I V + L I F S G Y N GTA + +
Sbjct: 51 WTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110
Query: 229 T-------GTEFTDN-NVHEGKAYEYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTS 277
E D V EG + + G P I + K
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPP--PGLPSPVIFWMSSSMEPITQDKRVSQG 168
Query: 278 TTASLNIKNSVRKDS-GIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
L N + +D Y A+ + + + V
Sbjct: 169 HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL-------------KVLTTRGV 215
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
P + + VL G + + SG P P W G ++
Sbjct: 216 AERTPSF------------MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL 263
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
D ++ I + DSG Y N +GS + V V P P
Sbjct: 264 PSDKAKFENFNKALRI---TNVS-EEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP 319
Query: 457 LDVS 460
++
Sbjct: 320 KNLI 323
Score = 53.3 bits (128), Expect = 9e-08
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 14/140 (10%)
Query: 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDNNVHE 240
+ L I S D+G Y N +G+ + V E + +
Sbjct: 267 KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
Query: 241 GKAYEYRVSAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYK 296
G+ A G KP + + L ++ +++ +Y+
Sbjct: 327 GEDGRLVCRA---NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383
Query: 297 IEAKNDYGIDMADIEVVVVS 316
N++G +A+ V V+
Sbjct: 384 CNTSNEHGYLLANAFVSVLD 403
Score = 48.3 bits (115), Expect = 4e-06
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 8/117 (6%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP--DGRIKFETS 407
+T P IT S +D V + I G P P+ WT N + D R+
Sbjct: 13 LTQPPTITKQ-SAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR 71
Query: 408 E-NQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKVYVVDK-PSPPQGPLDV 459
I + G Y N G S+ +V P P+ V
Sbjct: 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 66.3 bits (162), Expect = 7e-13
Identities = 37/202 (18%), Positives = 61/202 (30%), Gaps = 49/202 (24%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY-G 304
+ + P +S + + R + L I N + D GIY+ E + + G
Sbjct: 26 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---LQILNINKSDEGIYRCEGRVEARG 82
Query: 305 IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
+V+V+ P P I+ +
Sbjct: 83 EIDFRDIIVIVNVP-----------------------------------PAISMPQKSFN 107
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
T GEE T + SG P+P W NG + + + N + +D
Sbjct: 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL-KGSNTELTVRNIIN--SDG 164
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + N G D + V
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQV 186
Score = 50.5 bits (121), Expect = 2e-07
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+S GE+ + S P P W + +EV+ +F N +
Sbjct: 2 MLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV----DKPSPPQGPLDVS 460
+D G Y + + + V+ S PQ + +
Sbjct: 60 QILNI--NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 109
Score = 37.5 bits (87), Expect = 0.004
Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 30/161 (18%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + + L I ++SD G Y +
Sbjct: 36 WLYHNEEVTTISDNRFAML-ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN 94
Query: 230 -------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS--LDALIGKRIKE---- 273
+ + G+ A+G+ +P IS + GK I+E
Sbjct: 95 VPPAISMPQKSFNATAERGE------EMTFSCRASGSPEPAISWFRN---GKLIEENEKY 145
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ + L ++N + D G Y A N G D + V
Sbjct: 146 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 68.2 bits (166), Expect = 8e-13
Identities = 43/296 (14%), Positives = 70/296 (23%), Gaps = 56/296 (18%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W + + + + + L D+GHY + N+
Sbjct: 40 WYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVEN 99
Query: 230 -------GTEFTDNNVHEGKAYE---YRVSAVNAAGTEKPKIS--LDALIGKRIKEFVTS 277
+ + E PK+ D +
Sbjct: 100 EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG 159
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
L + N K G Y A Y K P T I++ T+ +
Sbjct: 160 VKDRLIVMNVAEKHRGNYTCHASYTYL-----------GKQYPITRVIEFITLEENKPT- 207
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
PV I T M V G + + +G+ W NG +
Sbjct: 208 ---RPV------IVSPANET-------MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID 251
Query: 398 PDGRIKFETSENQTIYRN------------KSAKRATDSGSYTIQLVNTVGSDSAS 441
D + E + N + +T NT G D+A
Sbjct: 252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307
Score = 48.6 bits (115), Expect = 2e-06
Identities = 20/200 (10%), Positives = 38/200 (19%), Gaps = 50/200 (25%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPID 326
+ + L + +DSG Y +N I V
Sbjct: 49 VSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQ 108
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF------S 380
+I + + + P+
Sbjct: 109 ----------------------------------AIFKQKLPVAGDGGLVCPYMEFFKNE 134
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
P W + + D + + + G+YT T
Sbjct: 135 NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIV---MNVAE-KHRGNYTCHASYTYLGKQY 190
Query: 441 SC------KVYVVDKPSPPQ 454
+KP+ P
Sbjct: 191 PITRVIEFITLEENKPTRPV 210
Score = 42.0 bits (98), Expect = 3e-04
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 12/110 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
A K + A E P + I W + + T +
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVS------TEQASR 56
Query: 412 IYRNKSA---KRAT--DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
I+++K A DSG Y + N+ V+
Sbjct: 57 IHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN 106
Score = 29.3 bits (65), Expect = 2.9
Identities = 20/173 (11%), Positives = 40/173 (23%), Gaps = 35/173 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLG----TATASAHVT 229
W + + + + + L + + G+Y+ T
Sbjct: 143 WYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Query: 230 GTEFTDN---NVHEGKAYEYRVSA-------VNAAGTEKPKI-----------------S 262
E + V N G
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 263 LDALIGKRIKEFVTSTTASLNIKNSVRKD-SGIYKIEAKNDYGIDMADIEVVV 314
+ + ++ LNI + + AKN +GID A I+++
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 28.5 bits (63), Expect = 4.9
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 105 IVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVK 164
+ + K P I +++ G G ++ W
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICN-------------VTGQLSDIAY-WKW 245
Query: 165 LSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSD-TGHYSLTLENNLGTAT 223
+ + A+ + + TVL+I ++ +N G
Sbjct: 246 NGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA 305
Query: 224 ASA----HVT 229
A VT
Sbjct: 306 AYIQLIYPVT 315
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 68.1 bits (166), Expect = 9e-13
Identities = 37/288 (12%), Positives = 74/288 (25%), Gaps = 60/288 (20%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT--------GTEF 233
+ + S ++L + +TG Y T + +A+ H+
Sbjct: 37 PPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLA 96
Query: 234 TDNNVHEGKAYEYRVSAV---NAAGTE-KPKISLDALIGKRI---KEFVTSTTASLNIKN 286
+ V E + A+ + +SL + G+ + + S I
Sbjct: 97 QEVVVFEDQ------DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHR 150
Query: 287 SVRKDSGIYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDD 345
+ S Y+ A M I + V P
Sbjct: 151 AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP------------------------ 186
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD---EVSPDGRI 402
P +T + ++ + GE I S ++ + + +
Sbjct: 187 --------PALTLVPA--ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 403 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ +G+Y+ N G S S VV+
Sbjct: 237 HNNRYQKVLTLNLDQV-DFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 50.0 bits (119), Expect = 7e-07
Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 44/197 (22%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
+ D + +++ L+ N+ +++G Y+ D A I + V
Sbjct: 31 SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPAR 90
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VP 378
P V + ++ V ++ + +
Sbjct: 91 P-------WNVLAQ------------------------------EVVVFEDQDALLPCLL 113
Query: 379 FSGRPKPTPIWT-VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVG 436
+ V G + F TI + S Y L+
Sbjct: 114 TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTI----HRAKFIQSQDYQCSALMGGRK 169
Query: 437 SDSASCKVYVVDKPSPP 453
S S ++ V P
Sbjct: 170 VMSISIRLKVQKVIPGP 186
Score = 38.4 bits (89), Expect = 0.003
Identities = 11/62 (17%), Positives = 16/62 (25%)
Query: 258 KPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
L +LN+ + +G Y A N G + VV
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282
Query: 318 PG 319
G
Sbjct: 283 AG 284
Score = 38.0 bits (88), Expect = 0.004
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G+ P I + ++ V G T+ +G + W +
Sbjct: 1 AGSI----PVIEPSVP--ELVVKPGATVTLRCVGNGSVE----WDGP----PSPHWTLYS 46
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSP 452
+ + N + ++G+Y SA+ +YV D P
Sbjct: 47 DGSSSILSTNNA--TFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 63.4 bits (155), Expect = 9e-13
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P L D +V G++ +++ G PKP W N V PD R E +E
Sbjct: 5 PPTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
A D+G YT + VN G+ ++ V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 37.6 bits (88), Expect = 9e-04
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+R E L I + R D+G Y +A N+YG + + V
Sbjct: 50 QRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 33.8 bits (78), Expect = 0.023
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 174 WSINGQVCQIGGRADVQTTKSET---VLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W N Q + ++E L I R D G Y+ N G A +
Sbjct: 39 WLRNRQ--PVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 66.0 bits (161), Expect = 9e-13
Identities = 40/204 (19%), Positives = 63/204 (30%), Gaps = 50/204 (24%)
Query: 253 AAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A+G+ +P IS LI + K + + L ++N + D G Y A N G D
Sbjct: 28 ASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 87
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLA 369
+ V +P I + T
Sbjct: 88 AFLQVFVQP------------------------------HIIQLK---------NETTYE 108
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGDEV-------SPDGRIKFETSENQTIYRNKSAKRAT 422
+ T+ G P P W D S DGRI+ + + K K +
Sbjct: 109 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL-S 167
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV 446
DSG Y + + +G S + +
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYLDI 191
Score = 65.6 bits (160), Expect = 1e-12
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-T 411
P I+ + T GEE T + SG P+P W NG + + + + S + T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
+ ++ +D G Y + N G D + V +P
Sbjct: 62 V---RNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFVQPH 97
Score = 54.8 bits (132), Expect = 6e-09
Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 29/162 (17%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
W NG++ + + S T L + SD G Y N G A +
Sbjct: 38 WFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 95
Query: 230 --GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS------------LDALIGKRIK 272
+ + +E +A G P+I+ D + RI+
Sbjct: 96 PHIIQLKNETTYENG------QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++SL+IK+ DSG Y EA + G + + +
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W + + F + GR +V+ + L I SD+G Y + +G
Sbjct: 128 WKRAVDGFT-----FTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG 182
Query: 222 ATASAHVT 229
S ++
Sbjct: 183 HQKSMYLD 190
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 63.1 bits (154), Expect = 1e-12
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + KI + L D TV G+E + S WT NG V R+K
Sbjct: 1 GSSGSSGLKILTPL--TDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQ 56
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
+A D G Y + + KV+V+ PS
Sbjct: 57 KGRIHKLVIANA-LTEDEGDYVF--APDAYNVTLPAKVHVISGPS 98
Score = 31.9 bits (73), Expect = 0.097
Identities = 15/56 (26%), Positives = 17/56 (30%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W+ NG Q R V L I D G Y + T A HV
Sbjct: 39 WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
Score = 26.5 bits (59), Expect = 8.3
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
R+K L I N++ +D G Y A +V V+S P
Sbjct: 49 SDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYNVTLPA--KVHVISGPS 98
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 65.6 bits (160), Expect = 1e-12
Identities = 30/170 (17%), Positives = 48/170 (28%), Gaps = 41/170 (24%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+++L I N+ D+GIYK + G A + V + K P
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL--------MFKNAPT---- 108
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
GE+ I PT IW G +V
Sbjct: 109 --------------------------PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
++F N + K TD G+Y + + + V+
Sbjct: 143 LKKDVRFIVLSNNYLQIRGIKK--TDEGTYRCEGRILARGEINFKDIQVI 190
Score = 42.5 bits (100), Expect = 1e-04
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 17/132 (12%)
Query: 197 VLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT-------GTEFTDNNVHEGKAYEYRV 248
L I + D G Y + GT A+ +V T EG+
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 249 SAVNAAGTEKPKIS----LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG 304
V + P I +I K+ F+ + L I+ + D G Y+ E +
Sbjct: 123 DVV---SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 305 --IDMADIEVVV 314
I+ DI+V+V
Sbjct: 180 GEINFKDIQVIV 191
Score = 40.2 bits (94), Expect = 6e-04
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WT-VNGDEVSP-DGRIKFETSENQ 410
++ S + GE +G K I W NG+++SP RI +++
Sbjct: 3 LQVDIVPS--QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
TIY D+G Y + G+ A+ V + K P
Sbjct: 61 SSTLTIYN----ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE 111
Score = 28.6 bits (64), Expect = 3.6
Identities = 7/56 (12%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W G+ + + L I ++D G Y +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 63.2 bits (154), Expect = 1e-12
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT L A + + L W PP + P+ Y +++ P
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAP-PLQAETPGSAVDYP 62
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAP-IVAKPKNL 112
+ L+ Y VR + + T + P++L
Sbjct: 63 LHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDL 102
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
P P L ++T L WKPP +P+ Y ++
Sbjct: 7 GPDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQ 41
Score = 28.2 bits (63), Expect = 3.1
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 26/106 (24%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPP------------VDDGGTPITGAPKITSDLS 361
S P PT + +T + WKPP P D
Sbjct: 4 GSSGPDGPTQ-LRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYP 62
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETS 407
+ D+ +T TV + G ++ I F T
Sbjct: 63 LHDLV--LHTNYTATV-----------RGLRGPNLTSPASITFTTG 95
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 62.9 bits (153), Expect = 2e-12
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMKDKTGNWEKA---VVVPAGE 69
P ++ + L+W P S+ +PI G+ + + + + +V
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
++ L +Y +++ N G E S
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101
Score = 30.1 bits (68), Expect = 0.61
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 3/65 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWK-PPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
+ P + + L W P + +PI + + Y +D K V+
Sbjct: 9 VAGPYI-TFTDAVNETTIMLKWMYIPASNNNTPIHGFYIY-YRPTDSDNDSDYKKDMVEG 66
Query: 509 GSLMT 513
Sbjct: 67 DRYWH 71
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 67.9 bits (165), Expect = 2e-12
Identities = 64/498 (12%), Positives = 131/498 (26%), Gaps = 117/498 (23%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
W P G +E + ++ + +TS +P L G Y+ + +
Sbjct: 12 WQCSWKAPSGTGRGTDYEVCIEQRSRSCYQLE-------KTSIKIPALSHG-DYEITINS 63
Query: 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149
++ G + + +L P
Sbjct: 64 LHDFGSST---SKFTLNEQNVSLIP--------------------------------DTP 88
Query: 150 RALGVRANSTKGWVKLS----EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSR 205
L + A+ + + L H ++ ++ ++ ++ + ++
Sbjct: 89 EILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEI-KVL---RKESMELVKLVTHQTTLN 144
Query: 206 SDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--- 262
+ + +++ A V + DN G S V +
Sbjct: 145 GKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVF 204
Query: 263 ----------------------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAK 300
L ALIG + ++ IK S
Sbjct: 205 PQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVV 264
Query: 301 NDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDG--GTPITGAPKITS 358
++ + P P ++ T + + SW P G T
Sbjct: 265 FTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTALVGPRATS------ 317
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 418
+T+ FSG+ +E ++ F+ NQ IY
Sbjct: 318 --------------YTLVESFSGKYVRLKRAEAPTNESY---QLLFQMLPNQEIY----- 355
Query: 419 KRATDSGSYTIQLVNTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLD 476
++T+ N +G ++ V + + P P V DI + LSW P +
Sbjct: 356 -------NFTLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSWHLPGN 407
Query: 477 DGGSPITNYVVEKYESAT 494
+ K ++
Sbjct: 408 FAKINFLCEIEIKKSNSV 425
Score = 58.7 bits (141), Expect = 2e-09
Identities = 48/331 (14%), Positives = 95/331 (28%), Gaps = 49/331 (14%)
Query: 199 DIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEK 258
P + T Y + +E + + + T + G YE +++++ G+
Sbjct: 17 KAPSGTGRGT-DYEVCIEQR---SRSCYQLEKTSIKIPALSHG-DYEITINSLHDFGSST 71
Query: 259 PKISLDALIGK-------RIKEFVTSTTASLNIK----NSVRKDSGIYKIEAKNDYGIDM 307
K +L+ ++ +T++L +K SV E K M
Sbjct: 72 SKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESM 131
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPE--------SVSMSWKPPVDDGGTP---------- 349
+++V + + + + V +
Sbjct: 132 ELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVK 191
Query: 350 -ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 408
I+ P + + +D +L G + T + I N + DG
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIR 251
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCS 468
N + S S +V T + ++ P PQ L+ +
Sbjct: 252 N-----------ISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEII 299
Query: 469 LSWKPPLDDG--GSPITNYVVEKYESATGVS 497
SW P G T+Y + + S V
Sbjct: 300 CSWNPGRVTALVGPRATSYTLVESFSGKYVR 330
Score = 57.5 bits (138), Expect = 5e-09
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDG--GSPITGYVVEMK--DKTGNWEKAVVVPAGE 69
P P L D + W P G T Y + K ++A
Sbjct: 282 PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNES 341
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEAS---------KPTAP 104
L E Y F + A N G +++ P P
Sbjct: 342 YQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTP 385
Score = 53.3 bits (127), Expect = 1e-07
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV----VPAGE 69
P PT + D + V L W P + +E+K E+ V V
Sbjct: 382 PHTPTSFKVKDINSTAVKLSWHLP-GNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSS 440
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ L Y F++R + + SK +
Sbjct: 441 YLVALDKLNPYTLYTFRIRC-STETFWKWSKWSNKKQHL 478
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 63.1 bits (153), Expect = 3e-12
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGS--------PITGYVVEMKDKTGNWEKAV 63
A+D V L W+PP S + GY V + + +
Sbjct: 16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS 75
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
V ET+ T+ L Y +V+A + G S+
Sbjct: 76 VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Score = 38.4 bits (89), Expect = 0.001
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 446 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S P SDI + L+W PP V
Sbjct: 14 FEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVP 55
Score = 28.8 bits (64), Expect = 2.5
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
++S P + + +V ++W PP
Sbjct: 17 LLSNIVKPVA----SDIQARTVVLTWSPPSSLINGETDE 51
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 62.4 bits (152), Expect = 3e-12
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP + VL G+ + S P P W N + V + +N
Sbjct: 15 APMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 413 YRNKSAK-RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
D+G YT+ VN G + + ++ V +P+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 40.1 bits (94), Expect = 2e-04
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+L IK+ +KD+G Y + A N+ G+ + + V ++P
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 32.4 bits (74), Expect = 0.11
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 174 WSINGQVCQIGGR--ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W N ++ Q + Q L I ++ D G Y+++ N G T + +
Sbjct: 49 WKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 65.3 bits (158), Expect = 4e-12
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 9 NPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAG 68
+P D +A++ +K +V + WT P + G + GY++ + +K +
Sbjct: 146 SPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK-----DGKKVAEIGKD 198
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
ETS T L Y F++ A + G + + A+
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 43.0 bits (100), Expect = 1e-04
Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 11/145 (7%)
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
D + + + G+ + +G P P EV ++
Sbjct: 54 DENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLP-------AKEVLAKVVLRA 106
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITP 464
E + ++ G ++ T + + +P + S+I
Sbjct: 107 EAKTEGSNLSVTNSSVGDGEG-LVHEIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINK 164
Query: 465 ESCSLSWKPPLDDGGSPITNYVVEK 489
++ +++W P G + Y++ K
Sbjct: 165 KNVTVTWTEPETTEG--LEGYILYK 187
Score = 40.7 bits (94), Expect = 6e-04
Identities = 36/230 (15%), Positives = 63/230 (27%), Gaps = 22/230 (9%)
Query: 56 TGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNA-AGPGEASKPTAPIVAKPKNL-- 112
G ++A V + + + GE + V A T
Sbjct: 3 HGKLKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE 62
Query: 113 APRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKG----WVKLSEP 168
A D +N KI+ G+ E K L + +RA + V S
Sbjct: 63 AISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSV 122
Query: 169 FLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNL--------- 219
G + T+ V + S+ ++T+
Sbjct: 123 GDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEG 182
Query: 220 ------GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISL 263
G A T +T ++ Y ++++A + G K SL
Sbjct: 183 YILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESL 232
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 64.0 bits (156), Expect = 4e-12
Identities = 27/181 (14%), Positives = 51/181 (28%), Gaps = 41/181 (22%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPID 326
+R+ + L I N+ +D+GIY+ +A + G A + + + K
Sbjct: 46 TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL-------- 97
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT 386
GE+ + S P P
Sbjct: 98 ----------------------TFREVVS--------PQEFKQGEDAEVVCRVSSSPAPA 127
Query: 387 PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
W + +EV+ +F N + K +D G Y + + + V
Sbjct: 128 VSWLYHNEEVTTISDNRFAMLANNNLQILNINK--SDEGIYRCEGRVEARGEIDFRDIIV 185
Query: 447 V 447
+
Sbjct: 186 I 186
Score = 57.5 bits (139), Expect = 7e-10
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 352 GAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
++T S+ + + GE T G P+ + G+++ R+ + ++
Sbjct: 1 ALLQVTI--SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 58
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDV 459
+A D+G Y Q + G A+ + + K + +
Sbjct: 59 RLTIYNANI-EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ 106
Score = 50.2 bits (120), Expect = 2e-07
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 23/158 (14%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT--- 229
++ G+ R VQ + L I + D G Y + G A+ +
Sbjct: 36 YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
Query: 230 ----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------LDALIGKRIKEFVTST 278
+ +G+ E + + P +S + + R
Sbjct: 96 KLTFREVVSPQEFKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFA---MLA 149
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYG--IDMADIEVVV 314
+L I N + D GIY+ E + + ID DI V+V
Sbjct: 150 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 62.3 bits (151), Expect = 4e-12
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 371 EEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDS 424
+ I G+P P+ W NG ++ I E E + ++
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKP--SPPQGPLDVSDITPESCSLSWK 472
G+YT+ N G SAS +D P P+ P+ ++ T
Sbjct: 76 GNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKD 125
Score = 51.9 bits (124), Expect = 2e-08
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 14/114 (12%)
Query: 237 NVHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTT---ASLNI 284
+H + + G P + + I E + T L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP--GPPTGPIDYTTVTPESVS 336
++G Y + A N +G A I + P P PI T T
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121
Score = 35.3 bits (81), Expect = 0.012
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 174 WSINGQ-------VCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
W NG + T L + + + G+Y+L N G A+AS
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 227 HVT 229
Sbjct: 94 MAA 96
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 61.2 bits (149), Expect = 7e-12
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDG--GSPITGYVVEMKDKTGNWEKAVVVPAG 68
P G P +L T +L W PP+ G I Y V +D E +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNITT-- 62
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPI 105
+T T+ GL TY +VRA + G G S T P+
Sbjct: 63 DTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTMPV 103
Score = 26.9 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 448 DKPS-PPQGPLDVSDITPESCSLSWKPPLDDG--GSPITNYVV 487
PS PQ L V+ +T + L+W PP+ G I +Y V
Sbjct: 6 SGPSGFPQN-LHVTGLTTSTTELAWDPPVLAERNG-RIISYTV 46
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 61.3 bits (149), Expect = 8e-12
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G P I + TV F ++ +G P PT +W +G VS + +
Sbjct: 1 GSSGSSGPPVIRQGPV--NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-RIK 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
EN + + + D+G YT G + S + V + P Q P
Sbjct: 58 QLENGVLQIRYA--KLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
Score = 38.6 bits (90), Expect = 7e-04
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 253 AAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A G+ P I L+ + L I+ + D+G Y A G
Sbjct: 32 ATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWS 91
Query: 310 IEVVVVSKPGPPTGPIDYTTVTPES 334
+ V P P S
Sbjct: 92 AYIEVQEFGVPVQPPRPTDPNLIPS 116
Score = 30.1 bits (68), Expect = 0.54
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W +G + + VL I + DTG Y+ G AT SA++
Sbjct: 42 WRKDGV--LVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 60.9 bits (148), Expect = 1e-11
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 12 DEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVV--EMKDKTGNWEKAVVVPAG 68
P P D++A + +QW P G I GY V M A
Sbjct: 16 QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
T+ L+ +TY +V A + G G S
Sbjct: 75 SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
Score = 28.5 bits (64), Expect = 2.2
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 436 GSDSASCKVYVV-DKPS-PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
S PS P+ + ++ + + WK P + G I Y V
Sbjct: 3 SGSSGPVLTQTSEQAPSSAPRD-VQARMLSSTTILVQWKEPEEPNG-QIQGYRV 54
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 63.0 bits (153), Expect = 1e-11
Identities = 29/187 (15%), Positives = 48/187 (25%), Gaps = 33/187 (17%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
I + FV+ T +L I N D G Y + + + +
Sbjct: 46 LNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLI--- 102
Query: 320 PPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF 379
T I D+ L G+ T+
Sbjct: 103 -----------------------PIPERTTKPYPADIVVQFK--DVYALMGQNVTLECFA 137
Query: 380 SGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDS 439
G P P W + + I ++ + + D G Y + N G D
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEI---STSGAVLKIFNI--QLEDEGIYECEAENIRGKDK 192
Query: 440 ASCKVYV 446
++YV
Sbjct: 193 HQARIYV 199
Score = 44.5 bits (105), Expect = 2e-05
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 19/158 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W +N I +++ L I SD G+YS + + T + +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
Query: 234 TDNNVHEGKAYEYRVSAVN--------------AAGTEKPKIS---LDALIGKRIKEFVT 276
+ + V + A G P I + + ++
Sbjct: 104 IPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM--PSTAEIS 161
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++ A L I N +D GIY+ EA+N G D + V
Sbjct: 162 TSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 32.2 bits (73), Expect = 0.30
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 364 DMTVLAGEEFTIT-VPFSGRPKPTPI-WTVNGDEV--SPDGRIKFETSENQTIYRNKSAK 419
++ V G+ + P P W +N V + D R +F + N +Y
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGNLYIANV-- 73
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVV-------DKPSPPQGPLDVSDIT 463
A+D G+Y+ + + + S K + KP P + D+
Sbjct: 74 EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS-GRPKPTPIWTVNGDEVSPDGRIKF 404
G + +G IT L + M VL GE + S +WTV G V R +
Sbjct: 1 GSSGSSGHVGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ I + A +D+G +V ++ + V ++ P G
Sbjct: 59 TRQGRKYILVVREA-APSDAGEVVF----SVRGLTSKASLIVRERSGPSSG 104
Score = 33.5 bits (77), Expect = 0.035
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 220 GTATASAHVTGT-EFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS--LDALI---GKRIKE 273
G++ +S HV T V EG++ + + + + R +
Sbjct: 1 GSSGSSGHVGITKRLKTMEVLEGESCSFECVL--SHESASDPAMWTVGGKTVGSSSRFQA 58
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
L ++ + D+G + A ++V + GP +G
Sbjct: 59 TRQGRKYILVVREAAPSDAGEVVFSVRGLTS--KA--SLIVRERSGPSSG 104
Score = 30.4 bits (69), Expect = 0.42
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223
W++ G+ R + +L + + SD G ++ A+
Sbjct: 43 WTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKAS 92
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 60.4 bits (147), Expect = 2e-11
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTGNWEKAVVVPAGE 69
D P P ++ + + + W PP S + ITGY + + KT + +
Sbjct: 26 DVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR-KTTRRGEMETLEPNN 84
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
GL +G Y FQV A+ G G S
Sbjct: 85 LWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWY 117
Score = 30.7 bits (70), Expect = 0.44
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGP---IDYTTVTPESVSMSWKPP 342
+ N YG ++ ++ VV+ P+ P + V S+ +SW PP
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPP 52
Score = 27.3 bits (61), Expect = 6.7
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 428 TIQLVNTVGS--DSASCKVYVV-DKPS-PPQGPLDVSDITPESCSLSWKPPLDD 477
+ N G + V + D PS PPQ + + + S +SW PP
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQN-VSLEVVNSRSIKVSWLPPPSG 55
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
AP +S L +D V+ G++F + G P P W +NG + + +
Sbjct: 11 APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS--TCEAGVAEL 66
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + D G+YT N +G S S V V
Sbjct: 67 HIQDA--LPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 35.4 bits (82), Expect = 0.006
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 253 AAGTEKPKIS--LDALIGKRIKE---FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
GT P+I+ L+ G+ I+ + A L+I++++ +D G Y A+N G
Sbjct: 35 VRGTPVPRITWLLN---GQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVS 91
Query: 308 ADIEVVV 314
V V
Sbjct: 92 CSAWVTV 98
Score = 31.5 bits (72), Expect = 0.13
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W +NGQ Q L I D G Y+ EN LG + SA VT
Sbjct: 45 WLLNGQPIQYARSTCEAGVAE---LHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 59.4 bits (144), Expect = 2e-11
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 353 APKITSDLSI--RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
AP T+ + R V A P G P PT W NG E + RI NQ
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 411 ----TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ + +D G+YT + N GS + + + VV
Sbjct: 64 HWSLIM----ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 34.7 bits (80), Expect = 0.010
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
SL +++ V D G Y +N+YG + VV
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 33.6 bits (77), Expect = 0.028
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 174 WSINGQVCQIGGR-ADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W NG+ + R + L + SD G+Y+ +EN G+ + H+
Sbjct: 42 WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.1 bits (146), Expect = 2e-11
Identities = 19/99 (19%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
I DL D+ V G T S W ++ + + + +
Sbjct: 13 RVHIIEDL--EDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
DSG+ G AS + V +KPS
Sbjct: 71 VLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKPS 105
Score = 28.9 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV----VVVSKPGPPTG 323
L ++ KDSG EA + A + V V S+ GP +G
Sbjct: 71 VLTLRQLALKDSGTIYFEAGDQRA--SAALRVTEKPSVFSRSGPSSG 115
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 65.3 bits (158), Expect = 2e-11
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV---VPAGET 70
+ ++ + V L W P G I Y V + A E
Sbjct: 793 DDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALER 851
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP----TAPIVAKPKNLA 113
C + GL G Y ++RA + AG G ++P + P N+A
Sbjct: 852 GCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA 897
Score = 58.4 bits (140), Expect = 4e-09
Identities = 36/411 (8%), Positives = 84/411 (20%), Gaps = 114/411 (27%)
Query: 8 KNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK------------ 55
+ + D + L+W P + G+++ K+
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQD 522
Query: 56 ---TGNWEKAVV---------VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEAS---- 99
+ +W + + GL Y V+ + +
Sbjct: 523 ACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAK 582
Query: 100 -----------KPTAP--IVAKPKN--------LAPRIDRSTLNDVKIKAGQSFSFDVKE 138
P+ P ++ + P + + +
Sbjct: 583 SDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF 642
Query: 139 FRELSYTKSPLR----ALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKS 194
+ L + + ++ + S + +
Sbjct: 643 ELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYE-----DSAGECCSCPKTDSQILKELE 697
Query: 195 ETVLDIPF------------CSRSDTGHYSLTLEN-NLGTATASAHVTGTEFTDNNVHEG 241
E+ F SR + N V + +
Sbjct: 698 ESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHF 757
Query: 242 KAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301
Y + A N E+ + +V++ T
Sbjct: 758 TGYRIELQACNQDTPEER---------CSVAAYVSART---------------------- 786
Query: 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ +K GP+ + V + W+ P + G I
Sbjct: 787 -----------MPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVL 825
Score = 50.3 bits (119), Expect = 1e-06
Identities = 36/257 (14%), Positives = 58/257 (22%), Gaps = 70/257 (27%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG----------------------- 352
+ P P PI + + + + WKPP D G IT
Sbjct: 593 TNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKG 650
Query: 353 --APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSEN 409
P T + + E+ R FE +
Sbjct: 651 LKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLH 710
Query: 410 QTIYRNKSAKRATDSG--------------------------------SYTIQL--VNTV 435
++ + +++ G Y I+L N
Sbjct: 711 NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQD 770
Query: 436 GS---DSASCKVYVVDKPSPPQ----GPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
S + V P GP+ L W+ P + G I Y V
Sbjct: 771 TPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVS 829
Query: 489 KYESATGVSDLFISKSE 505
L ++
Sbjct: 830 YRRYGDEELHLCDTRKH 846
Score = 48.8 bits (115), Expect = 3e-06
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 6/119 (5%)
Query: 5 VLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVV 64
+ ++ P P D + + L+W PP G IT Y+V + + +
Sbjct: 586 IYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAED-----S 639
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
C + T+ + ++ ++ + L +
Sbjct: 640 ELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEE 698
Score = 48.8 bits (115), Expect = 3e-06
Identities = 35/181 (19%), Positives = 57/181 (31%), Gaps = 27/181 (14%)
Query: 317 KPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT 376
Y + + + + W+P + G + +T
Sbjct: 467 SCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLG-------FMLFYKEAPYQN---VT 516
Query: 377 VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNT 434
+ WTV ++ P R S+N + + K T Y I + + T
Sbjct: 517 EFDGQDACGSNSWTV--VDIDPPLRSNDPKSQNHPGWLMRGLKPWT---QYAIFVKTLVT 571
Query: 435 VGSDSA-----SCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYV 486
+ S +YV PS P P+ + L WKPP D G IT+Y+
Sbjct: 572 FSDERRTYGAKSDIIYVQTDATNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG-NITHYL 629
Query: 487 V 487
V
Sbjct: 630 V 630
Score = 29.5 bits (65), Expect = 3.0
Identities = 3/41 (7%), Positives = 10/41 (24%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
+ + L W+P + +++
Sbjct: 466 ASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLF 506
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 62.5 bits (151), Expect = 2e-11
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYV-VEMKDKTGNWEK 61
V+ P + + L W P + + + K NW
Sbjct: 104 MDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTL 163
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLA 113
+P+ + + GL + Y Q+R + ++ PG S + + +P A
Sbjct: 164 VFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMKA 215
Score = 48.3 bits (114), Expect = 1e-06
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 14 PGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-----A 67
P P++L + + QW P + P + + + + + +P
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 68 GETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ +C++P L+ + V+A N G E+ K + K P +
Sbjct: 64 RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPML 114
Score = 32.5 bits (73), Expect = 0.23
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 10/70 (14%)
Query: 427 YTIQL--VNTVG---SDSASCKVYVVDKPSPPQGP-----LDVSDITPESCSLSWKPPLD 476
I + N +G S V K PP DV P LSWKP
Sbjct: 81 MAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP 140
Query: 477 DGGSPITNYV 486
+
Sbjct: 141 SEYMEQECEL 150
Score = 30.9 bits (69), Expect = 0.72
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 492
P+ P + +T S W+P + T+++++ + S
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPE--THLPTSFILKSFRS 45
Score = 28.6 bits (63), Expect = 4.6
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 297 IEAKNDYGI---DMADIEVVVVSKPGPPTGP-----IDYTTVTPESVSMSWKPPVDDGGT 348
++A+N G ++ + V K PP D + P + +SWKP
Sbjct: 85 VQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYM 144
Query: 349 PIT 351
Sbjct: 145 EQE 147
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 61.9 bits (150), Expect = 3e-11
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 47/201 (23%)
Query: 255 GTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEV 312
G + + I ++ VT + K+ R+D+G Y + G +++
Sbjct: 43 GDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
+V+ P PT + G
Sbjct: 103 IVLVPPSKPTVN--------------------------------------IPSSATIGNR 124
Query: 373 FTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RATDSG 425
+T G P W +G + + + S + + + + A+D+G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 426 SYTIQLVNTVGSDSASCKVYV 446
Y+ + N G+ S V +
Sbjct: 185 EYSCEARNGYGTPMTSNAVRM 205
Score = 45.0 bits (106), Expect = 1e-05
Identities = 28/174 (16%), Positives = 42/174 (24%), Gaps = 27/174 (15%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W N R T + +R DTG Y+ + G
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTF----LPTGITFKSVTREDTGTYTCMVSEEGGN 93
Query: 222 ATASAHVT---------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS---------- 262
+ V T ++ G S G+ + +
Sbjct: 94 SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE--QDGSPPSEYTWFKDGIVMPT 151
Query: 263 --LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ TT L D+G Y EA+N YG M V +
Sbjct: 152 NPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 44.2 bits (104), Expect = 3e-05
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 11/119 (9%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
G+ + S S ++ + ++ +SG P W + + + + + +
Sbjct: 2 MGSVTVHS--SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASY 59
Query: 411 TIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVY--VVDKPSPPQGPLDVS 460
D+G+YT + G+ KV V+ PS P + S
Sbjct: 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSS 118
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 58.5 bits (142), Expect = 4e-11
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQ- 410
++ + G + T + W ++ + + +
Sbjct: 1 GAMVSGQI--MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA 58
Query: 411 --TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ D G+Y ++VN G DS+ +++V
Sbjct: 59 ILYVKD----ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++ + A L +K+ + D G Y+ + NDYG D + E+ V
Sbjct: 46 SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 35.4 bits (82), Expect = 0.006
Identities = 8/56 (14%), Positives = 22/56 (39%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W + + + ++ +L + ++ D G Y + N+ G ++ A +
Sbjct: 36 WYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 63.4 bits (154), Expect = 5e-11
Identities = 34/280 (12%), Positives = 78/280 (27%), Gaps = 57/280 (20%)
Query: 204 SRSDTGHYSLTLENNLGTA-TASAHVTG-------TEFTDNNVHEGKAYEYRVSAVNAAG 255
Y+ N G+ + HV + +V G + + +
Sbjct: 73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 132
Query: 256 TEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDS-GIYKIEAKNDYGIDM 307
+S + +++ + L+I+ +D Y+ K+ +
Sbjct: 133 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 192
Query: 308 ---ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
A +V+++P + P V +
Sbjct: 193 RLSATKGRLVITEPISSSAPRTPALVQ-------------------------------KP 221
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK----R 420
+ ++ ++ P G P P+ W + + + ++ + +
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL---NDRVKQVSGTLIIKDAV 278
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
DSG Y + N+VG +S + V S P +
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318
Score = 57.3 bits (138), Expect = 5e-09
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 58/202 (28%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
A G P + + V + +L IK++V +DSG Y N G
Sbjct: 236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 295
Query: 306 DMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDM 365
+ + + V + + P
Sbjct: 296 ESVETVLTVTAPL--------SAKIDPP------------------------------TQ 317
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKFETSENQTIYRNKSAKRATDS 424
TV G T ++G P T W +G + + ++ +S K+ D
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRI-----------ESVKKE-DK 365
Query: 425 GSYTIQLVNTVGSDSASCKVYV 446
G Y + N S AS ++ +
Sbjct: 366 GMYQCFVRNDRESAEASAELKL 387
Score = 48.4 bits (115), Expect = 3e-06
Identities = 41/247 (16%), Positives = 72/247 (29%), Gaps = 56/247 (22%)
Query: 85 FQVRAVNAAGPGEASKPTAPIV---AKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRE 141
+Q R + T + + APR +++ + S
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP---- 235
Query: 142 LSYTKSPLRALG-----VRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSET 196
A G R W K E + Q + R +
Sbjct: 236 ---------AQGFPAPSFR------WYKFIEG------TTRKQAVVLNDR----VKQVSG 270
Query: 197 VLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE---FT----DNNVHEGKAYEYRVS 249
L I D+G Y + N++G + +T T V G+ +
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 250 AVNAAGTEKPKIS--LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
G +S D GK I + + L I++ ++D G+Y+ +ND
Sbjct: 331 Y---TGNPIKTVSWMKD---GKAI----GHSESVLRIESVKKEDKGMYQCFVRNDRESAE 380
Query: 308 ADIEVVV 314
A E+ +
Sbjct: 381 ASAELKL 387
Score = 42.6 bits (100), Expect = 2e-04
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 6/127 (4%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P + + + I SG P P IW + D + S + +
Sbjct: 3 GPVFLKEPT-NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 413 Y----RNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKPSPPQGPLDVSDITPESC 467
R + ++ + Y N GS S V V I S
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSA 121
Query: 468 SLSWKPP 474
+ P
Sbjct: 122 VIKCLIP 128
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 58.2 bits (141), Expect = 7e-11
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 17 PTDLEATDWDKDHVDLQWT-PPISDGGSPITGYVVEMK----DKTGNWEKAVVVPAGETS 71
P + L+WT P S+ +PI G+ + + D ++++ VV +
Sbjct: 8 PHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKR-DVVEGSKQW 66
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
+ L +Y +++ N G E S
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 28.1 bits (63), Expect = 2.0
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 450 PSPPQGPLDVSDITPESCSLSWK-PPLDDGGSPITNYVV 487
+ P ++ L W P + +PI + +
Sbjct: 5 ITGPHI-AYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYI 42
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 60.4 bits (146), Expect = 1e-10
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 14 PGKPTDLEAT--DWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAV---VVPAG 68
P P +L + + L WT P S I Y ++ + K + + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 162
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+S TV L Y F++R + G G S + P
Sbjct: 163 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 208
Score = 54.6 bits (131), Expect = 9e-09
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 3/104 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W + T + ++ + T + TSCT
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGG-RETHLE-TNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
V + + V A NA G + V K K P
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 109
Score = 35.7 bits (82), Expect = 0.019
Identities = 23/181 (12%), Positives = 47/181 (25%), Gaps = 49/181 (27%)
Query: 320 PPTGPIDYTTVTPESVSM--SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITV 377
PP P + + + E M W + T+ FT+
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--------ETN--------------FTLKS 44
Query: 378 PFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTV 435
++ K + + + S + + + N +
Sbjct: 45 EWATHKFAD---------------CKAKRDTPTSCTVDYSTVYFVN---IEVWVEAENAL 86
Query: 436 GSDSASCKVYVVD---KPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
G ++ + KP+PP + S+ L+W P I Y ++
Sbjct: 87 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRT 145
Query: 492 S 492
Sbjct: 146 K 146
Score = 33.0 bits (75), Expect = 0.16
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 297 IEAKNDYGI---DMADIEVVVVSKPGPPTGP-IDYTTVTPESVSMSWKPPVDDGGTPIT 351
+EA+N G D + + V KP PP + + + ++W P +
Sbjct: 80 VEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK 138
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 60.5 bits (146), Expect = 1e-10
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWD-KDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
H V+ N P L A D HV L+W PP + Y V++ G
Sbjct: 110 YHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGS 169
Query: 61 -KAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGP--GEASKPTAPIVAK-PKNLAP 114
+ V + G T C + L Y F VRA A G S+ + P+ P +L P
Sbjct: 170 VQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSDLDP 227
Score = 35.1 bits (80), Expect = 0.036
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 427 YTIQLVNTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITN 484
+++ G+ +++ + P G + L W PP + +
Sbjct: 97 LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156
Query: 485 YVVE 488
Y V+
Sbjct: 157 YEVD 160
Score = 33.1 bits (75), Expect = 0.15
Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 9/108 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVV-----PAG 68
P +L + + W S G P + + A
Sbjct: 21 ARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAV 80
Query: 69 ETSCTVPG--LIEGETYQFQVRAVNAAGPGEASKPTAPIVA--KPKNL 112
C++P + +V A + A +V P L
Sbjct: 81 RFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGL 128
Score = 28.1 bits (62), Expect = 5.7
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350
++ A + I + V P G + V + W PP + T
Sbjct: 100 RVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSH 154
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 57.0 bits (138), Expect = 1e-10
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ ++ V G+ + + W +G +++ R + T E +
Sbjct: 3 SGSSGVEV--ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEV 58
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + A DSG Y + GSD+ V V D
Sbjct: 59 ---QDSVPA-DSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Score = 38.5 bits (90), Expect = 5e-04
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP--GPPTG 323
+ +++SV DSG+Y + G D V V GP +G
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPSSG 99
Score = 38.1 bits (89), Expect = 8e-04
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE 232
W +G R T + +++ +D+G Y+ + G+ T V ++
Sbjct: 36 WLRDGVQLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSD 90
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 57.4 bits (139), Expect = 1e-10
Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ 410
+G ++ D+ D+TV A E+ S K T W NG EV P RI
Sbjct: 6 SGQLEVLQDI--ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
R D G YT S SA + P G
Sbjct: 63 HKLVIDDV-RPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106
Score = 36.2 bits (84), Expect = 0.004
Identities = 12/56 (21%), Positives = 18/56 (32%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
KRI L I + +D G Y A + + + GP +G
Sbjct: 51 SKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106
Score = 33.1 bits (76), Expect = 0.042
Identities = 10/62 (16%), Positives = 19/62 (30%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W NG + R + L I D G Y+ + + +A + +
Sbjct: 41 WYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKV 100
Query: 234 TD 235
+
Sbjct: 101 SG 102
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 56.5 bits (137), Expect = 2e-10
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P PT+L +T + L WT + G +TGY V A+ T+ T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT-------ALATTVTGTTAT 54
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ GL +Y F V+A +AA G S + + K
Sbjct: 55 ISGLAADTSYTFTVKAKDAA--GNVSAASNAVSVK 87
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 228 VTGTEFTDNNVHEGKAYEYRVSAVNAAGTE 257
VTGT T + + +Y + V A +AAG
Sbjct: 48 VTGTTATISGLAADTSYTFTVKAKDAAGNV 77
Score = 31.1 bits (71), Expect = 0.17
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 450 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
P+ P L + T S +LSW D+ G +T Y V
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDV 38
Score = 26.9 bits (60), Expect = 4.8
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 318 PGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347
P PT T T S+++SW D+ G
Sbjct: 4 PTAPTNLA-STAQTTSSITLSWTASTDNVG 32
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 57.0 bits (138), Expect = 2e-10
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 14 PGKPTDLEATDWDKDH-VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
P PT L A + +L W Y V+ K+G + T+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTNY 59
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEAS 99
T G+ G Y + V AV+ S
Sbjct: 60 TDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 40.9 bits (96), Expect = 9e-05
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 220 GTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGT 256
T + ++T T +TD V G Y Y VSAV+
Sbjct: 46 PYTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVE 82
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 57.4 bits (139), Expect = 2e-10
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 12 DEPGK-PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVE--MKDKTGNWEKAVVVPAG 68
D P + PT++ + + W + + Y + V V +
Sbjct: 16 DAPSEAPTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQ 72
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
E S + L+ Y +V A N+AG G S
Sbjct: 73 EYSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 59.6 bits (144), Expect = 2e-10
Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 48/206 (23%)
Query: 255 GTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM--ADIEV 312
G+ + ++ I + VT +++ + + RKD+G Y + G + I +
Sbjct: 40 GSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99
Query: 313 VVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEE 372
V+ P PT +V G
Sbjct: 100 TVLVPPSKPTIS--------------------------------------VPSSVTIGNR 121
Query: 373 FTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK-------SAKRATDS 424
+T G P W +G + K N + + A DS
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS 181
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKP 450
G Y Q N G+ S ++
Sbjct: 182 GEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 45.7 bits (108), Expect = 1e-05
Identities = 25/159 (15%), Positives = 42/159 (26%), Gaps = 24/159 (15%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---------GTE 232
QI + T S + + +R D G Y+ + G + T
Sbjct: 51 QITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI 110
Query: 233 FTDNNVHEGKAYEYRVSAVNAAGTEKPKIS-------------LDALIGKRIKEFVTSTT 279
++V G S G+ + S + +
Sbjct: 111 SVPSSVTIGNRAVLTCSE--HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS 168
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
L DSG Y +A+N YG M + +
Sbjct: 169 GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 41.5 bits (97), Expect = 3e-04
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
+ + + D+ V E +T +SG P W + + +
Sbjct: 2 GSVYT--AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 414 RNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVY--VVDKPSPPQGPLDVS 460
S+ D+G YT + G + ++ V+ PS P + S
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSS 115
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 59.1 bits (143), Expect = 2e-10
Identities = 34/205 (16%), Positives = 56/205 (27%), Gaps = 52/205 (25%)
Query: 252 NAAGTEKPKISL----DALIGKRIKEF-VTSTTASLNIKNSVRKDSGIYKIEAKNDYGID 306
N + + + G + ++ I +DSG Y +
Sbjct: 26 NLTSSSHTLMYSYWTKN---GVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAP 81
Query: 307 MADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366
A+ + V + P ITG R
Sbjct: 82 KANATIEVKAAP------------------------------DITGHK--------RSEN 103
Query: 367 VLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-----GRIKFETSENQTIYRNKSAKRA 421
G++ + G P P +W + V + GR EN T + +
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQIT 163
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYV 446
D G Y N++GS S S + V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRV 188
Score = 47.9 bits (114), Expect = 1e-06
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVSPDGRIKFETSENQ 410
P+I + + + T+ + WT NG E++ +
Sbjct: 3 EPRIVTSEE--VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNME--- 57
Query: 411 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
YR + DSG Y + V + A+ + V P +
Sbjct: 58 --YRINKPRA-EDSGEYHCV-YHFVSAPKANATIEVKAAPDITGHKRSEN 103
Score = 44.1 bits (104), Expect = 3e-05
Identities = 29/169 (17%), Positives = 48/169 (28%), Gaps = 33/169 (19%)
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
+ W+ NG + S I D+G Y + + + A+A
Sbjct: 32 HTLMYSYWTKNGVELTATRK-----NASNMEYRINKPRAEDSGEYH-CVYHFVSAPKANA 85
Query: 227 HVT-------GTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKIS-------LDALIGK 269
+ N +EG+ A+ + G P+ + I
Sbjct: 86 TIEVKAAPDITGHKRSENKNEGQ------DAMMYCKSVGYPHPEWMWRKKENGVFEEISN 139
Query: 270 RIKEFVTS---TTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVV 314
F LNI N + +D G Y+ A N G + V
Sbjct: 140 SSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 60.6 bits (146), Expect = 3e-10
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 14 PGKPTDL--EATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV--VPAG 68
P P +L ++ + L WT P S I Y ++ + K W + +
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 258
Query: 69 ETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPK 110
+S TV L Y F++R + G G S +
Sbjct: 259 RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 300
Score = 47.9 bits (113), Expect = 3e-06
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P KP +L + + +W T + ++ + T + TSCT
Sbjct: 104 PEKPKNLSCIVNEGKKMRCEWDGGRETHLE--TNFTLKSEWATHKFADCKAKRDTPTSCT 161
Query: 74 VP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
V + + V A NA G + V K K P
Sbjct: 162 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN 205
Score = 43.3 bits (101), Expect = 1e-04
Identities = 25/257 (9%), Positives = 64/257 (24%), Gaps = 49/257 (19%)
Query: 263 LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVVVSKPGP 320
+ + + + + TAS + + I ++ I ++ P
Sbjct: 47 TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEK 106
Query: 321 PTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFS 380
P + + + W + FT+ ++
Sbjct: 107 PKN-LSCIVNEGKKMRCEWDGGRETHLE----------------------TNFTLKSEWA 143
Query: 381 GRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVGSD 438
K + + + S + + + N +G
Sbjct: 144 THKFA---------------DCKAKRDTPTSCTVDYSTVYFVN---IEVWVEAENALGKV 185
Query: 439 SASCKVYVVD---KPSPPQGP-LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT 494
++ + KP+PP + S+ L+W P + + + + A+
Sbjct: 186 TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS 245
Query: 495 GVSDLFISKSEVKTGSL 511
S + + S
Sbjct: 246 TWSQIPPEDTASTRSSF 262
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 56.6 bits (137), Expect = 3e-10
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 347 GTPITGAP-KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G+ + P + L +D+ VL G T+ S P W + + P +
Sbjct: 1 GSSGSSGPVRFQEAL--KDLEVLEGGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLR 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
++ R DSG Y+ + G + S + V PS P
Sbjct: 58 QEGAMLELVVRNL-RPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100
Score = 29.6 bits (67), Expect = 0.81
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322
G + L ++N +DSG Y G + V + P P+
Sbjct: 51 GDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGPS 101
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 60.7 bits (146), Expect = 3e-10
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 3/113 (2%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTG--NWEK 61
V+ P EA + L W P + K + G +W
Sbjct: 199 DVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQRGEASWAL 257
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+P + GL+ Y Q+R + PG S + + + A
Sbjct: 258 VGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAA 310
Score = 42.2 bits (98), Expect = 3e-04
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 14 PGKPTDLEA-TDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVP-----A 67
P P +L + + QW P + P + + K + + +
Sbjct: 99 PAIPHNLSCLMNLTTSSLICQWEPG-PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKD 157
Query: 68 GETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLN 122
G++ C++P L+ + V+A NA G + + + K P + +
Sbjct: 158 GQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPS 214
Score = 36.8 bits (84), Expect = 0.013
Identities = 22/227 (9%), Positives = 52/227 (22%), Gaps = 39/227 (17%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
G++ + + + + + + + + + + +E+ P P
Sbjct: 49 GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCL 108
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+T S+ W+P + + L + + + +
Sbjct: 109 MNLTTSSLICQWEPGPETH-------LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQS- 160
Query: 388 IWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKV 444
I + +Q N +G S
Sbjct: 161 -----------HCSIPRKHLLLYQNM------------GIWVQAENALGTSMSPQLCLDP 197
Query: 445 YVVDKPSPPQGP-----LDVSDITPESCSLSWKPPLDDGGSPITNYV 486
V K PP + + LSW+P +
Sbjct: 198 MDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCEL 244
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 61.2 bits (147), Expect = 3e-10
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSP-----ITGYVVEMKDKT 56
+ +P +P DL+ + D+DH L W+ + S + V K
Sbjct: 97 TRLTVTLTQHVQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ 155
Query: 57 GNWEKAVVVPAGETSCT--VPGLIEGETYQFQVRAVNAAGPGEASKPTAP 104
+WE A ++ + + T L+ TY +VR A G + +P+
Sbjct: 156 DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKW 205
Score = 52.7 bits (125), Expect = 2e-07
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE 60
IK+ + P L+ T D D L+W + ++ + T W+
Sbjct: 308 RRAEKHIKSSVNIQMAPPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366
Query: 61 KAVVVPA-GETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
+ S +P L Y +VR +
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
Score = 35.4 bits (80), Expect = 0.041
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS-DITPESCSLSWKPPLDDGGS 480
TD ++ Q +G+ + + P P D+ + L+W L S
Sbjct: 82 TDVDYFSFQPDRPLGTR----LTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQS 137
Query: 481 PITNYVVEKYE 491
+ ++E
Sbjct: 138 HWLSPGDLEFE 148
Score = 31.1 bits (69), Expect = 0.95
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 382 RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK-SAKRATDSGSYTIQLVNTVGSDSA 440
+P P V E ++ T + + G Y + +
Sbjct: 255 KPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSV--QPRRAEK 312
Query: 441 SCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYE 491
K V + +PP L V+ +S SL W+ + ++ +
Sbjct: 313 HIKSSVNIQMAPPS--LQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRK 360
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 56.6 bits (137), Expect = 3e-10
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 9/102 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
K T L R+ G + S W + + R +
Sbjct: 19 PIKFTEGL--RNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCE 74
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ + A D+G Y G + S + V PS P
Sbjct: 75 LQIRGL-VAEDAGEYLCM----CGKERTSAMLTVRAMPSGPS 111
Score = 31.2 bits (71), Expect = 0.24
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322
G R L I+ V +D+G Y G + + V + P P+
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
Score = 27.3 bits (61), Expect = 4.7
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W + + G R ++ + L I D G Y G SA +T
Sbjct: 51 WWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLT 102
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 60.5 bits (146), Expect = 3e-10
Identities = 31/209 (14%), Positives = 54/209 (25%), Gaps = 52/209 (24%)
Query: 252 NAAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRK-DSGIYKIEAKNDYGIDM 307
G + + + + + L + N + A+ND G
Sbjct: 181 QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE 240
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTV 367
++V V P +T V + +
Sbjct: 241 VSVQVNVS----FPASVQLHTAVEMHHWCIPFS--------------------------- 269
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK------RA 421
G+P P+ W NG ++ I E E +
Sbjct: 270 -----------VDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 318
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
++G+YT+ N G SAS +D P
Sbjct: 319 VNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 55.1 bits (132), Expect = 2e-08
Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 13/157 (8%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W + Q S + S + + + EN++G A S V +
Sbjct: 192 WILTELE-QSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP 250
Query: 234 TDNNVHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTTA---S 281
+H + + G P + + I E + T
Sbjct: 251 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310
Query: 282 LNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
L + ++G Y + A N +G A I + P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 49.7 bits (118), Expect = 1e-06
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 13/152 (8%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+ +V G++ + GR W + E S N ++
Sbjct: 166 PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD--L 223
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKP--------- 473
+ + T N VG S +V V S S+ +P
Sbjct: 224 NRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN 283
Query: 474 --PLDDGGSPITNYVVEKYESATGVSDLFISK 503
L++ T ++ L +++
Sbjct: 284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 58.7 bits (142), Expect = 4e-10
Identities = 37/220 (16%), Positives = 60/220 (27%), Gaps = 53/220 (24%)
Query: 253 AAGTEKPKI---------SLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDY 303
G +P I S + R++ + ++ +D G Y AKN
Sbjct: 33 VEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRV 92
Query: 304 G-IDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSI 362
G + + +
Sbjct: 93 GQAVSRHASLQIAVLR-----------------------------------DDFRVEP-- 115
Query: 363 RDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK-- 419
+D V GE + P G P+PT IW +G + + F S I +
Sbjct: 116 KDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175
Query: 420 --RATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
D G+Y N VG+ S+ K+ V K +
Sbjct: 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 45.6 bits (108), Expect = 1e-05
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQ-- 410
+P+I + D+ V E T+ G+P+PT W +G+ VS + +
Sbjct: 9 SPRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 411 -TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVS 460
YR K+ D G Y N VG + S + P D
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQ-AVSRHASLQIAVLRDDFRVEPKDTR 119
Score = 39.5 bits (92), Expect = 0.001
Identities = 30/172 (17%), Positives = 51/172 (29%), Gaps = 26/172 (15%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLD----IPFCSRSDTGHYSLTLENNLGTA-TASAHV 228
W +G+ + + + L + D G Y +N +G A + A +
Sbjct: 43 WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL 102
Query: 229 T--------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKIS----------LDALIGKR 270
E D V +G+ G +P + L A+
Sbjct: 103 QIAVLRDDFRVEPKDTRVAKGETALLECGPPK--GIPEPTLIWIKDGVPLDDLKAMSFGA 160
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMA-DIEVVVVSKPGPP 321
+L I N D G YK A+N G + +++V K
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 60.7 bits (146), Expect = 4e-10
Identities = 75/489 (15%), Positives = 143/489 (29%), Gaps = 84/489 (17%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSC 72
+ DL+ T + D W P+ + ++ + + P T+
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHS-------CHPLETTNV 55
Query: 73 TVPGLIEGETYQFQVRAVNAAG-------PGEASKPTAPIVAKPKNLAPRIDRSTLN--- 122
+P L G ++ + +N + P P + +L+ S+L
Sbjct: 56 KIPALSPG-DHEVTINYLNGFQSKFTLNEKDVSLIPETPEI---LDLSADFFTSSLLLKW 111
Query: 123 DVKIKAGQSFSFDVKEFRELSYTKSPLRALGVRANSTKGWVKLSEPFLNHGWSINGQVCQ 182
+ + A S E + L ++ AL + G + W+ +
Sbjct: 112 NDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTV------QHWNWTSDLPL 165
Query: 183 IGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGK 242
V + F + +S L+N +V D V G
Sbjct: 166 QCATHSVSIRW--HIDSPHFSGYKEWSDWS-PLKNISWIRNTETNVFPQ---DKVVLAGS 219
Query: 243 AYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL-NIKNSVRKDSGIYKIEAKN 301
++ + T+ + + I + + + NI S + I I +
Sbjct: 220 ----NMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDD 275
Query: 302 DYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM--SWKPPVDDGGTPITGAPKITSD 359
YG VV PP P + T + + SW P G P+ T
Sbjct: 276 VYGT--------VVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVG----PRNTE- 322
Query: 360 LSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAK 419
+T+ SG+ +E R+ + Q I+
Sbjct: 323 -------------YTLFESISGKSAVFHRIEGLTNETY---RLGVQMHPGQEIH------ 360
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLDD 477
++T+ N +G ++ + V + P P L V DI + SW P +
Sbjct: 361 ------NFTLTGRNPLGQAQSAVVINVTERVAPHDPTS-LKVKDINSTVVTFSWYLPGNF 413
Query: 478 GGSPITNYV 486
+ +
Sbjct: 414 TKINLLCQI 422
Score = 46.1 bits (108), Expect = 2e-05
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA----VVVPAGETSC 72
PT L+ D + V W P + + +E+ E
Sbjct: 390 PTSLKVKDINSTVVTFSWYLPGNFTKINLL-CQIEICKANSKKEVRNATIRGAEDSTYHV 448
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPI 105
V L Y F+VR ++ + S+ +
Sbjct: 449 AVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEK 480
Score = 31.5 bits (70), Expect = 0.77
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEK 489
K + L + +W PL + + ++
Sbjct: 3 KDDDDKD-LKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKD 42
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 55.5 bits (134), Expect = 6e-10
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
I S +T E +T S W +G +V + + +
Sbjct: 9 VHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKHRL 67
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
AK DSG + SA V V D P G
Sbjct: 68 ILPEAKVQ-DSGEFEC----RTEGVSAFFGVTVQDPSGPSSG 104
Score = 31.2 bits (71), Expect = 0.20
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
+ + + L + + +DSG ++ + A V V GP +G
Sbjct: 53 SELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSSG 104
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 59.1 bits (142), Expect = 9e-10
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 2 DHSVLIKNPFDEPGKPTDLEAT--DWDKDHVDLQWTPPIS-DGGSPITGYVVEMKDKTGN 58
+P P ++ T + + + W P S + + + + +
Sbjct: 185 KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK 244
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+V + C + G + Q+RA G GE S+ + + P +
Sbjct: 245 TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESR 300
Score = 51.4 bits (122), Expect = 3e-07
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
+T L G+ T+T P + W + + + +
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL----RSVQL 69
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSP 481
DSG+Y+ G + + + V P PQ + W P S
Sbjct: 70 HDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCEWGPRST--PSL 123
Query: 482 ITNYVVE 488
T V+
Sbjct: 124 TTKAVLL 130
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 9/110 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW------EKAVVVPA 67
P +P +V +W P S T V+ ++ + +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEWGPR-STPSLT-TKAVLLVRKFQNSPAEDFQEPCQYSQES 152
Query: 68 GETSCTVPG-LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ SC + + Y + ++ G + T + P
Sbjct: 153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN 202
Score = 39.8 bits (92), Expect = 0.001
Identities = 30/221 (13%), Positives = 62/221 (28%), Gaps = 45/221 (20%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
L +++ DSG Y + ++V P P + +
Sbjct: 55 WAGMGRRLLLRSVQLHDSGNYSCYRAGR---PAGTVHLLVDVPPEEPQL-SCFRKSPLSN 110
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394
V W P + + L +R E+F +S
Sbjct: 111 VVCEWGPRST-------PSLTTKAVLLVRKFQNSPAEDFQEPCQYS-------------- 149
Query: 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQL--VNTVG---SDSASCKVYVVDK 449
+ S+ + DS Y + + ++VG S + + + + +
Sbjct: 150 ----------QESQKFSCQLAVPE---GDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQ 196
Query: 450 PSPPQGP-LDVSDITPESCSLSWKPPLD-DGGSPITNYVVE 488
P PP + P S++W+ P + + +
Sbjct: 197 PDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR 237
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 55.6 bits (134), Expect = 9e-10
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
Query: 4 SVLIKNPFDEP-GKPTDLEATDWDKDH-VDLQWTPP-ISDGGSPITGYVVE--MKDKTGN 58
+L P P ++ + VD++W P + GY + + +
Sbjct: 8 WILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGIS 67
Query: 59 WEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
E V + + + T ++ AV G G S P
Sbjct: 68 KELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPV 111
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.2 bits (131), Expect = 2e-09
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G I L D V GE+ + S P W + + +
Sbjct: 1 GSSGSSGPAAIIKPL--EDQWVAPGEDVELRCELSRAGTPV-HWLKDRKAIRKSQKYDVV 57
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ + A D+G YT + V + ++ ++V +K S P
Sbjct: 58 CEGTMAMLVIRGAS-LKDAGEYTCE----VEASKSTASLHVEEKASGP 100
Score = 30.0 bits (68), Expect = 0.59
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W + + + + DV + +L I S D G Y+ +E + TA+ +
Sbjct: 41 WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100
Query: 234 T 234
+
Sbjct: 101 S 101
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
++ T A L I+ + KD+G Y E + +E GP +G
Sbjct: 51 SQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKA---SGPSSG 103
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVVEMKDKTGNWEKA-----VV 64
P G P D+ + + W P + + I GY + ++ + +
Sbjct: 13 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 72
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
T+ L + Y V+A N AG G +S
Sbjct: 73 ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Score = 27.7 bits (62), Expect = 3.7
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 448 DKPS-PPQGPLDVSDITPESCSLSWKPPL-DDGGSPITNYVVEKYESATGVSDLFISKSE 505
P PP + + +T +S ++WK P + I Y + Y + S+ S E
Sbjct: 13 AAPDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQI-GYRENSPGSNGQYSIVE 70
Query: 506 VKTGSLMTSKT 516
+K T
Sbjct: 71 MKATGDSEVYT 81
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 54.7 bits (132), Expect = 2e-09
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISD---GGSPITGYVVEMKDKTGNWEKA-VVVP 66
D P P +L + + + W PP G ITGY + + + + +V
Sbjct: 16 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVS 73
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ S + GL G Y F+V A+ G G A+
Sbjct: 74 GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 109
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 54.7 bits (132), Expect = 2e-09
Identities = 23/96 (23%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPP-ISDGGSPITGYVVEMKDKTGNWEKA---VVVP 66
P P + V + W PP IT Y V + G +
Sbjct: 16 STPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGIS 75
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+S + GL + Y+ VRA GPG S P
Sbjct: 76 REHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPV 111
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 58.3 bits (140), Expect = 3e-09
Identities = 40/282 (14%), Positives = 68/282 (24%), Gaps = 68/282 (24%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGT-- 231
++ Q S + + D G LT LG + T T
Sbjct: 225 LALGDQ---RLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
Query: 232 -------EFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNI 284
T V EG V + K++L+ + A L +
Sbjct: 282 SFPAPNVILTKPEVSEGTEVT-----VKCEAHPRAKVTLN-----GVPAQPLGPRAQLLL 331
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
K + + + A + G + + T E
Sbjct: 332 KATPEDNGRSFSCSATLEVA------------------GQLIHKNQTRE----------- 362
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF 404
+ P++ + T + T G P P +G P G
Sbjct: 363 ---LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVT 419
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
T + G+Y + +T G + V V
Sbjct: 420 VTRD--------------LEGTYLCRARSTQGEVTREVTVNV 447
Score = 37.9 bits (87), Expect = 0.006
Identities = 26/261 (9%), Positives = 55/261 (21%), Gaps = 42/261 (16%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAG 255
+ + G +TA +T + GK R A
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 256 TEKPKISL--DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313
+ L KR + + + + D
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR--------- 166
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
P G + + ++ P T + + +
Sbjct: 167 -------PQGLELFENTSAPYQLQTFVLP-------------ATPPQLVSPRVLEVDTQG 206
Query: 374 TITVPFSG-RPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
T+ G P + + + + + + + A D G+ +
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVT--YGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 433 NTVGSDSASCKVYVVDKPSPP 453
+G+ S V P
Sbjct: 265 VILGNQSQETLQTVTIYSFPA 285
Score = 29.5 bits (65), Expect = 2.9
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
T R G Y A++ G ++ V V+S
Sbjct: 409 TFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 53.8 bits (129), Expect = 3e-09
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGN---------WEKAV 63
+ + L TD + L W P +++ + + ++ +
Sbjct: 8 SRPRLSQLSVTDVTTSSLRLNWEAP----PGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 64 VVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
+VP S + L G Y + + ++ + TA ++ P
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
Score = 38.8 bits (90), Expect = 5e-04
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 448 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVK 507
P L V+D+T S L+W+ P ++++ + + +
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQR 61
Query: 508 TGSLMTSKT 516
+ ++
Sbjct: 62 ELMVPGTRH 70
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 53.7 bits (129), Expect = 3e-09
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 30 VDLQWTPPISDGGSPITGYVV-----EMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQ 84
V + WT I GY V T +W+ E S + L +G TY+
Sbjct: 32 VQVTWTVD--RQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 85 FQVRAVNAAGPGEASKP 101
+VR G S+
Sbjct: 90 IKVRPYFNEFQGMDSES 106
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 52.7 bits (127), Expect = 5e-09
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGE--EFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
G + +GA T +L ++ V FT P T W E+ G+ +
Sbjct: 1 GSSGSSGANCFTEEL--TNLQVEEKGTAVFTCKT---EHPAATVTWRKGLLELRASGKHQ 55
Query: 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ DS +YT +G + ++ V + S P
Sbjct: 56 PSQEGLTLRLTISAL-EKADSDTYTC----DIGQAQSRAQLLVQGRRSGPS 101
Score = 30.0 bits (68), Expect = 0.53
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222
K P W + G+ L I ++D+ Y+ +G A
Sbjct: 30 CKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQA 85
Query: 223 TASAHVT 229
+ A +
Sbjct: 86 QSRAQLL 92
Score = 27.3 bits (61), Expect = 4.8
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPT 322
+ + T L I + DS Y + G + +++V + P+
Sbjct: 51 SGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 55.5 bits (133), Expect = 5e-09
Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 43/182 (23%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
V S AS+N+ N D G Y+ + K G+ + V+ KP +
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV----- 129
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIW 389
D + G +F + P G W
Sbjct: 130 ---------------------------------DGSEEIGNDFKLKCEPKEGSLPLQFEW 156
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
D + E + +N S + SG+Y+ + N VGSD ++ VV
Sbjct: 157 QKLSDSQTMPTPWLAEMTSPVISVKNAS---SEYSGTYSCTVQNRVGSDQCMLRLDVVP- 212
Query: 450 PS 451
PS
Sbjct: 213 PS 214
Score = 42.0 bits (98), Expect = 2e-04
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE-------FTDNNVHEGKAY 244
+ +++ SD G Y ++ G A +T F D + G +
Sbjct: 80 KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 139
Query: 245 EYRVSAVNAAGTEKPKIS---LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKN 301
+ + G+ + L T+ +++KN+ + SG Y +N
Sbjct: 140 KLKCEP--KEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQN 197
Query: 302 DYGIDMADIEVVVVSKPGPPT 322
G D + + VV PP+
Sbjct: 198 RVGSDQCMLRLDVV----PPS 214
Score = 38.5 bits (89), Expect = 0.002
Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 37/157 (23%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTV-------------------NGDEVSPDGRIKFE 405
+ GE + F+ P+ + +GD++ + +
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69
Query: 406 TSENQTIYRNKSAK--------RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
+ T KS + +D G+Y ++ G + + V+ KPS + +
Sbjct: 70 GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFV 129
Query: 458 DVS-----DITPESCSLSWKPP-----LDDGGSPITN 484
D S D + P S
Sbjct: 130 DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 53.2 bits (128), Expect = 7e-09
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 10/101 (9%)
Query: 12 DEP-GKPTDLEATDWDKDHVDLQWTPPISDGGS-PITGYVV--------EMKDKTGNWEK 61
D P P ++ + ++ W P + GY + +++ +K
Sbjct: 12 DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ +T +PGL Y VR VN G G AS
Sbjct: 72 ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 55.9 bits (134), Expect = 9e-09
Identities = 40/293 (13%), Positives = 66/293 (22%), Gaps = 56/293 (19%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W Q A Q +VL + + DTG Y T ++ G T
Sbjct: 30 WERMSQE-PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88
Query: 234 TDNNVHEGKAYEYRVSAVNAAGTE----------KPKISLDALIGKRIKEFVTSTTASLN 283
D V + TE + ++L G +
Sbjct: 89 PDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFS 148
Query: 284 IKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPV 343
+ Y + +D V + +V
Sbjct: 149 GIF----EDRSYICKTTIGDREVDSDAYYVYRLQVSSIN-----VSVNAVQT-------- 191
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIK 403
V GE T+ G WT E
Sbjct: 192 ----------------------VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 404 FETSENQTIYRNK----SAKRATDSGSYTIQLVNTVG--SDSASCKVYVVDKP 450
+ + + + DSG+YT + +V D + + VV+
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Score = 42.4 bits (99), Expect = 2e-04
Identities = 26/258 (10%), Positives = 61/258 (23%), Gaps = 58/258 (22%)
Query: 266 LIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPI 325
+ K + ++ L + N D+G Y + G++ + + + + P P
Sbjct: 37 PPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV--- 93
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKP 385
+ +D + + E TI + P+
Sbjct: 94 ----------------------------GFLPNDAEELFIFLTEITEITIPCRVTD-PQL 124
Query: 386 TPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
G + + + + SY + +
Sbjct: 125 VVTLH------EKKGDVALPVPYD----HQRGFSGIFEDRSYICKTTIGDREVDSDAYYV 174
Query: 446 VVDKPSPPQGPLDVSDITPE-------SCS--------LSWKPPLDDGGSPITNYVVEKY 490
+ S ++ C W P + G +
Sbjct: 175 YRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLL 234
Query: 491 ESATGV-SDLFISKSEVK 507
+ + S L I +E++
Sbjct: 235 DMPYHIRSILHIPSAELE 252
Score = 38.1 bits (88), Expect = 0.004
Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 364 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
++ + F +T +W E + + + + + D
Sbjct: 9 ELVLNVSSTFVLT----CSGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNL--TGLD 62
Query: 424 SGSYTIQLVNTVGSD---SASCKVYVVDKPSPP 453
+G Y ++ G + ++V D
Sbjct: 63 TGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.9 bits (125), Expect = 1e-08
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + +T L D T GE + S W NG+E+ P + ++
Sbjct: 1 GSSGSSGIMVTKQL--EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRI 57
Query: 407 SENQTIYR---NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ + D+ Y++ +S K+ V K P G
Sbjct: 58 RVEGKKHILIIEGA--TKADAAEYSVM----TTGGQSSAKLSVDLKSGPSSG 103
Score = 29.2 bits (66), Expect = 0.88
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
R + V L I+ + + D+ Y + A ++ V K GP +G
Sbjct: 53 SRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQS--SA--KLSVDLKSGPSSG 103
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 55.6 bits (133), Expect = 1e-08
Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 44/285 (15%)
Query: 186 RADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT----------GTEFTD 235
+ D + L + + + G Y +T+++ + + V TE
Sbjct: 42 KDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQH 101
Query: 236 NNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIY 295
V E + + G + ++ + TT + I+ +G+Y
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-DTTQDITIQEFTADKNGVY 160
Query: 296 KIEAKNDYGIDMADIEVVVVSKPGPPTGPI--DYTTVTPESVSMSWKPPVDDGGTPITGA 353
++ + A ++ + T +S+++ D G +G
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDS-SGM 219
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
P +T ++ + G+ PT I + G+ + F + + ++
Sbjct: 220 PNLTI-------------KYNWYLQREGQLSPTLIGSEVGEALE-----GFSITPDGHLF 261
Query: 414 RNKSAKRATDSGSYT----------IQLVNTVGSDSASCKVYVVD 448
K + D+ + + V S S C + VV
Sbjct: 262 --KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
Score = 49.1 bits (116), Expect = 2e-06
Identities = 33/241 (13%), Positives = 68/241 (28%), Gaps = 51/241 (21%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP---TGPIDYTTVT 331
+ TA+L + ++ +++G YK+ ++ + + EV ++ + T P + +
Sbjct: 47 HENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391
V + G TP + + W+
Sbjct: 107 QTDVELHATVKFSGGKTP------------------------------ADNYELHYSWSK 136
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
D + I + A +G YT+++ +AS ++
Sbjct: 137 GEDVIDTTQDITIQEF------------TADKNGVYTVKVWGESEDSAASASTKIMLATM 184
Query: 452 PPQGPLDVSDITPE------SCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSE 505
+ S + +S D G P Y G + SE
Sbjct: 185 NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSE 244
Query: 506 V 506
V
Sbjct: 245 V 245
Score = 41.7 bits (97), Expect = 3e-04
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSG-RPKPTPI---WTVNGDEVSPDGRIKFETSE 408
A ++ + LAG+ FT+T +G P P+ + WT + + T+
Sbjct: 2 AFTVSIQSN--KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TAT 53
Query: 409 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVSDITPE 465
+ + ++GSY + + +T S +V+++++ P +
Sbjct: 54 LTV-----ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQT 108
Query: 466 SCSLSWKPPLDDGGSP 481
L G +P
Sbjct: 109 DVELHATVKFSGGKTP 124
Score = 29.0 bits (64), Expect = 3.5
Identities = 31/206 (15%), Positives = 62/206 (30%), Gaps = 18/206 (8%)
Query: 30 VDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
V+L T S G +P Y + +W K V T+ + + V+
Sbjct: 110 VELHATVKFSGGKTPADNYEL-----HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKV 164
Query: 90 VNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPL 149
+ AS T ++A +D+ + + G S + ++ S +
Sbjct: 165 WGESEDSAASASTKIMLA-----TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGM 219
Query: 150 RALGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTG 209
L ++ N W E L S ++G + + + L + DT
Sbjct: 220 PNLTIKYN----WYLQREGQL----SPTLIGSEVGEALEGFSITPDGHLFKESATYDDTA 271
Query: 210 HYSLTLENNLGTATASAHVTGTEFTD 235
+ + + V +
Sbjct: 272 KFWCVAKLYQQIEDETVEVAASTSRK 297
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 51.7 bits (124), Expect = 2e-08
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
+ I + + E +T RP WT +G+EV + + +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRR 69
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + DSG Y + + +SAS V V + P
Sbjct: 70 LVLPAVQLE-DSGEYLCE----IDDESASFTVTVTEPP 102
Score = 28.6 bits (64), Expect = 1.7
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222
+L P+ W+ +G+ +Q + L +P D+G Y +
Sbjct: 35 CELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE----IDDE 90
Query: 223 TASAHVTGTE 232
+AS VT TE
Sbjct: 91 SASFTVTVTE 100
Score = 27.0 bits (60), Expect = 7.4
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+ T L + +DSG Y E + A V V P
Sbjct: 56 SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP 102
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 53.3 bits (128), Expect = 2e-08
Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 57/198 (28%)
Query: 253 AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGI 305
G E+P I + L I L++K+ R D+G Y + ++
Sbjct: 26 VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET 85
Query: 306 DM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRD 364
++ + + V P + TV P+ D
Sbjct: 86 EISQPVWLTVEGVP--------FFTVEPK------------------------------D 107
Query: 365 MTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ V F ++ G P+P I W ++ + + ++ T
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNV---TGVTQ 157
Query: 424 SGSYTIQLVNTVGSDSAS 441
S ++ + N G S+
Sbjct: 158 STMFSCEAHNLKGLASSR 175
Score = 44.4 bits (105), Expect = 2e-05
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
K+ +TV G+ + G +P W +G V ++ SE I
Sbjct: 2 GLKLMGAPV--KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 413 Y--RNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGPLDVS 460
KS +R +D+G Y Q+ + ++ S + V P P D++
Sbjct: 60 GFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLA 109
Score = 40.9 bits (96), Expect = 3e-04
Identities = 28/157 (17%), Positives = 51/157 (32%), Gaps = 26/157 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETV--LDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT- 229
W +G V Q + + ++ + L + RSD G Y +E+ T + +T
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95
Query: 230 ------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----GKRIKEFVTST 278
E D V ++ AV G +P I +I
Sbjct: 96 EGVPFFTVEPKDLAVPPNAPFQLSCEAV---GPPEP-----VTIVWWRGTTKIGG---PA 144
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ + + S ++ EA N G+ + V +
Sbjct: 145 PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 51.8 bits (124), Expect = 2e-08
Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 350 ITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSE 408
+ G P I+S + L GE+ I P P I W+ + + ++
Sbjct: 11 VNGPPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 67
Query: 409 NQTIYRNKS------AKRATDSGSYTIQLVNTVGSDSASCKVYV--VDKPSPPQG 455
T S RA Y N+ GSD+ ++ + P G
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
Score = 37.6 bits (87), Expect = 0.001
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 277 STTASLNIKNSVRKD-SGIYKIEAKNDYGIDMADIEVVV--VSKPGPPTG 323
++L I N VR D IY A N +G D I + GP +G
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
Score = 29.5 bits (66), Expect = 0.96
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 174 WSINGQVCQIG--GRADVQTTKSE----TVLDIPFCSRSDTG-HYSLTLENNLGTATASA 226
WS V + G GR V+T +E + L I R+D Y+ T N+ G+ T
Sbjct: 48 WSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEII 107
Query: 227 HVT 229
+
Sbjct: 108 RLK 110
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 54.0 bits (129), Expect = 3e-08
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+L P P +L + ++L W + ++V+ + +
Sbjct: 125 ATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWT 181
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEA 98
++P + + Y F+VR+ G A
Sbjct: 182 -EQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSA 217
Score = 37.9 bits (87), Expect = 0.005
Identities = 9/107 (8%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK---AVVVPAGE 69
+++ ++ ++++ W + +T + +K +
Sbjct: 36 STLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEIT 95
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ C + F V+ + P + + AP
Sbjct: 96 SGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPEN 142
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 53.0 bits (127), Expect = 3e-08
Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 51/185 (27%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVVVSKPGPPTGPIDYTTV 330
++ + L I + D+G Y+ + V + P Y
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLP--------YFLE 111
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-W 389
PE D TV A F ++ G P+P + W
Sbjct: 112 EPE------------------------------DRTVAANTPFNLSCQAQGPPEPVDLLW 141
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ ++ R+ + S++ + N G ++ V
Sbjct: 142 LQDAVPLATAPG--------HGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV-- 191
Query: 450 PSPPQ 454
P Q
Sbjct: 192 -LPQQ 195
Score = 31.8 bits (72), Expect = 0.31
Identities = 22/167 (13%), Positives = 41/167 (24%), Gaps = 25/167 (14%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W++ + + + D L I SDTG Y + T
Sbjct: 37 WLRDGQILELADSTQTQVPLGEDEQDDWIVVSQ---LRITSLQLSDTGQYQCLVFLGHQT 93
Query: 222 A-TASAHVT-------GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALI-----G 268
+ +V E D V + A G +P +
Sbjct: 94 FVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQ---GPPEP-----VDLLWLQDA 145
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ ++ + + EA N G+ + + V
Sbjct: 146 VPLAT-APGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 52.5 bits (126), Expect = 5e-08
Identities = 34/178 (19%), Positives = 52/178 (29%), Gaps = 42/178 (23%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+ R D G+Y A+N G E+VS
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG----------------------------EAVSHDAS 104
Query: 341 PPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPD 399
V + D+ V GE + P G P+PT W +G +
Sbjct: 105 LEV------AILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK 156
Query: 400 GRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPSPPQGP 456
I R +D+G Y N VG S ++ V+++PS +
Sbjct: 157 DERITIRGGKLMITY----TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
Score = 44.4 bits (105), Expect = 2e-05
Identities = 28/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG------RIKFET 406
P+I D+ V GE T+ GRP PT W G+ V D R+ +
Sbjct: 9 PPRIVE--HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP---QGPLDVS 460
+ K D G Y N +G + S + Q P DV
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGE-AVSHDASLEVAILRDDFRQNPSDVM 122
Score = 35.6 bits (82), Expect = 0.020
Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 20/130 (15%)
Query: 204 SRSDTGHYSLTLENNLGTA---TASAHVTG------TEFTDNNVHEGKAYEYRVSAVNAA 254
SR D G Y N LG A AS V +D V G+
Sbjct: 80 SRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPR-- 137
Query: 255 GTEKPKIS--LDALIGKRIKE---FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
G +P IS D G + + +T L I + + D+G Y N G ++
Sbjct: 138 GHPEPTISWKKD---GSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESE 194
Query: 310 I-EVVVVSKP 318
+ E+ V+ +P
Sbjct: 195 VAELTVLERP 204
Score = 27.9 bits (62), Expect = 7.0
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA-TASAHVT 229
W +G + T L I + +SD G Y N +G + A +T
Sbjct: 146 WKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.1 bits (120), Expect = 6e-08
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 9/105 (8%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G + T DL + G T+ S W + + GR +
Sbjct: 1 GSSGSSGPARFTQDL--KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLK 56
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ + D+G Y+ G + S + V P
Sbjct: 57 QDGTRCELQIHDL-SVADAGEYSCM----CGQERTSATLTVRALP 96
Score = 30.0 bits (68), Expect = 0.58
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYG---IDMADIEVVVVSKPGPPTG 323
G R T L I + D+G Y + + + + GP +G
Sbjct: 50 GGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGSGPSSG 108
Score = 27.0 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W + + GGR ++ + L I S +D G YS G SA +T
Sbjct: 40 WKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSATLT 91
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 51.3 bits (122), Expect = 1e-07
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
P P +L + ++L W + ++V+ + + +
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWT-EQSVDYRHKFS 154
Query: 74 VPGLIEGETYQFQVRAVNAAGPGEA 98
+P + + Y F+VR+ G A
Sbjct: 155 LPSVDGQKRYTFRVRSRFNPLCGSA 179
Score = 28.6 bits (63), Expect = 4.5
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 26 DKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK---AVVVPAGETSCTVPGLIEGET 82
+ ++++ W + +T + +K + + C +
Sbjct: 11 NVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLY 70
Query: 83 YQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
F V+ + P + + AP
Sbjct: 71 QTFVVQLQDPREPRRQATQMLKLQNLVIPWAPEN 104
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 51.4 bits (122), Expect = 1e-07
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 15/170 (8%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
N+ ++ + G+Y+ + + + + + ++
Sbjct: 46 EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADD-----------AKKDAAK 94
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
D G ++ ++G +T P P +W N +
Sbjct: 95 KDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNI 152
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
D K ++ K SG Y + D A+ +Y+
Sbjct: 153 GGDEDDKN-IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYLYL 200
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 49.5 bits (118), Expect = 1e-07
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTP-PISDGGSPITGYVVEMKDKTGNWEKAVVVPAGET 70
P +P + V L W + S +TGY V + + N + V+ +T
Sbjct: 16 TPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--VLNTNKT 73
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKP 101
S + L E Y +V+A G G +S+
Sbjct: 74 SAELV-LPIKEDYIIEVKATTDGGDGTSSEQ 103
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 50.7 bits (121), Expect = 2e-07
Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 53/173 (30%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
+L IK+ D IYK+ + G ++ + + +
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK-------------- 108
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
PKI+ T+T P +G +
Sbjct: 109 -----------------PKISWT----------CINTTLTCEVMNGTDPELNLYQDGKHL 141
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
R+ ++ + + S + N V +S+ V +K
Sbjct: 142 KLSQRV--------ITHKWTT----SLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 44.9 bits (106), Expect = 1e-05
Identities = 15/129 (11%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 358 SDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVS----PDGRIKFETSENQT 411
+ + G++ + +P W D+ + F+ +
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 412 IYRNKSAK----RATDSGSYTIQLVNTVGSDSASCK--VYVVDKPSPPQGPLDVSDITPE 465
+++N + K + D Y + + +T G + + + ++ S P+ + T
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT-L 120
Query: 466 SCSLSWKPP 474
+C +
Sbjct: 121 TCEVMNGTD 129
Score = 35.2 bits (81), Expect = 0.022
Identities = 16/160 (10%), Positives = 35/160 (21%), Gaps = 16/160 (10%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W K S+ + + + + + L I D Y +++ + G
Sbjct: 35 WEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT---LKIKHLKTDDQDIYKVSIYDTKGK 91
Query: 222 ATASAHVTGTEFTDNNVHEGKAYEYRVSAVN----AAGTEKPKISLDALIGKRIKEFVTS 277
+ P+++L
Sbjct: 92 NVLEKIFD---LKIQERVSKPKISWTCINTTLTCEVMNGTDPELNL------YQDGKHLK 142
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ + S +K A N + + V K
Sbjct: 143 LSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 52.6 bits (125), Expect = 2e-07
Identities = 42/292 (14%), Positives = 80/292 (27%), Gaps = 58/292 (19%)
Query: 192 TKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV 251
+K + VL +DTG+Y+ L N + + + + K +++
Sbjct: 75 SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIE 134
Query: 252 N-------------AAGTEKPKISLDALIGKRIKE--FVTSTTASLNIKNSVRKDSGIYK 296
+ KP I+ + +I+ V +L+ ++ ++G Y
Sbjct: 135 YGIQRITCPNVDGYFPSSVKPTITW-YMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYT 193
Query: 297 IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKI 356
+ T + TV + PPV I
Sbjct: 194 CVVTYPEN-----------GRTFHLTRTL---TVKVVGSPKNAVPPV------------I 227
Query: 357 TSDLSIRDMTVLAGEEFTI----TVPFSGRPKPTPIWTVNGDEV-SPDGRIKFETSENQT 411
S GEE I F + WT++G + + S + +
Sbjct: 228 HSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 412 IYRN---------KSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ K SY + G + + V K P+
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKA--AKVKQKVPAPR 337
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 38/190 (20%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
++ L + ++ D+G Y +N + VV K P+
Sbjct: 74 ISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV----- 128
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD 394
+ G P + F KPT W +
Sbjct: 129 -----HKLYIEYGIQRITCP-------------------NVDGYFPSSVKPTITWYMGCY 164
Query: 395 EVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT----IQLVNTVGSDSASCKVYVVDKP 450
++ + E N + +++G+YT + + V VV P
Sbjct: 165 KIQNFNNVIPE-GMNLSF----LIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSP 219
Query: 451 SPPQGPLDVS 460
P+ S
Sbjct: 220 KNAVPPVIHS 229
Score = 44.1 bits (103), Expect = 7e-05
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 15/114 (13%)
Query: 361 SIRDMTVLAGEEFTITVPF-----------SGRPKPTPIWTVNGDEVSPDGRIKFETSEN 409
++R + V E I P + T IW + + I F EN
Sbjct: 13 TMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72
Query: 410 QTIYRNKSAK----RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ D+G+YT L NT + + VV K S P+ +
Sbjct: 73 RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 50.5 bits (120), Expect = 2e-07
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVP 75
P ++ + ++ LQW P G + + +K + T C
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQ--LTFTAQYLSYRIFQDKCMQTT--LTECDFS 58
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND 123
L + + +VRA A + + T V P + L D
Sbjct: 59 SLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106
Score = 37.4 bits (86), Expect = 0.006
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 13/86 (15%)
Query: 28 DHVDLQWTPPISDGGS---------PITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLI 78
D + +++ P + Y V+ + + + + + L
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQ--YDFEVLRNLE 163
Query: 79 EGETYQFQVRAVNAA--GPGEASKPT 102
TY QVR GE S+P
Sbjct: 164 PWTTYCVQVRGFLPDRNKAGEWSEPV 189
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.1 bits (115), Expect = 2e-07
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 7/105 (6%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ + L V G V + PK W NG E+ P + FE
Sbjct: 1 GSSGSSGAAFAKILD-PAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
Q I + + TD Y + T G + S +++V PS
Sbjct: 59 KGCQRILFINNC-QMTDDSEYYV----TAGDEKCSTELFVRSGPS 98
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222
V+L++P L W NGQ + + + + +L I C +D Y +T G
Sbjct: 30 VELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVT----AGDE 85
Query: 223 TASAHVT 229
S +
Sbjct: 86 KCSTELF 92
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTG 323
+ L I N D Y + A G + E+ V + GP +G
Sbjct: 51 STKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV--RSGPSSG 100
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 48.2 bits (115), Expect = 2e-07
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSP-DGRIKF 404
G + +G P I + + T+ + +G P P W G D R
Sbjct: 1 GSSGSSGPPIILQGPA--NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI 58
Query: 405 ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ I R +D+G+YT ++ G S S + V +
Sbjct: 59 QEQGTLQI----KNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 30.1 bits (68), Expect = 0.50
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W G GR T + + L I SDTG Y+ ++ G + SA +
Sbjct: 42 WLKEGF--TFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 29.7 bits (67), Expect = 0.72
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 253 AAGTEKPKISL---DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
A G P IS R +L IKN D+G Y A + G
Sbjct: 32 ATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS 91
Query: 310 IEVVV 314
+ V
Sbjct: 92 AVLDV 96
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 50.4 bits (120), Expect = 2e-07
Identities = 25/177 (14%), Positives = 41/177 (23%), Gaps = 46/177 (25%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESV 335
++ T L + + G Y K + VV +V E
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL--------TLSVHSE-- 112
Query: 336 SMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGD 394
T+T + P P W + G
Sbjct: 113 ----------------------------RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 144
Query: 395 EVSP---DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
E +P +G + E + ++ + S T N VYV
Sbjct: 145 EPAPTAANGGVMKEKDGSLSVAVDLSL-PKPWHLPVTCVGKNDKEEAHG---VYVSG 197
Score = 40.0 bits (93), Expect = 7e-04
Identities = 13/149 (8%), Positives = 35/149 (23%), Gaps = 19/149 (12%)
Query: 185 GRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT-------GTEFTDNN 237
G D+ + + L + + S G+Y ++ T H++ +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ 115
Query: 238 VHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTTASLNIKNSV 288
+ + P + + + + + +
Sbjct: 116 FPDFSVLTVTCTVN---AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLP 172
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ KND +S+
Sbjct: 173 KPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201
Score = 36.9 bits (85), Expect = 0.007
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 19/114 (16%)
Query: 366 TVLAGEEFTIT---VPFSGRPKPTPIWTVNG--DEVSPDGRIKFET-------SENQTIY 413
T GE T+T S P+ W G +E GR+ + I+
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 414 RNKSAK-------RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
R+ + + G+Y ++ + + VV +
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ 115
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 50.8 bits (121), Expect = 3e-07
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 14/94 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
P++ + T + T G P P +G P G T +
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD---- 238
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
G+Y + +T G + V V
Sbjct: 239 ----------LEGTYLCRARSTQGEVTREVTVNV 262
Score = 30.0 bits (67), Expect = 1.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 289 RKDSGIYKIEAKNDYGIDMADIEVVVVS 316
R G Y A++ G ++ V V+S
Sbjct: 237 RDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 27.7 bits (61), Expect = 8.3
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVT 229
+R G Y + G T V
Sbjct: 236 TRDLEGTYLCRARSTQGEVTREVTVN 261
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.2 bits (119), Expect = 4e-07
Identities = 21/192 (10%), Positives = 45/192 (23%), Gaps = 43/192 (22%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331
+ I + + +G+ EAK + + + +VVV ++
Sbjct: 56 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD-----VVLS 110
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP--IW 389
P + + GE+ + W
Sbjct: 111 PSH-----------------------------GIELSVGEKLVLNCTARTELNVGIDFNW 141
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAK-------RATDSGSYTIQLVNTVGSDSASC 442
+ + + K +D G YT + + + S
Sbjct: 142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 201
Query: 443 KVYVVDKPSPPQ 454
V V + P +
Sbjct: 202 FVRVHEDPIEGR 213
Score = 40.2 bits (93), Expect = 6e-04
Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 23/181 (12%)
Query: 164 KLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTAT 223
S LN + + + S+ IP S G + N +
Sbjct: 32 LGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91
Query: 224 ASA---HVTGTEFTDNNVHEGKAYEYRV--SAV---NAAGTEKPKISLD----------- 264
+ V G D + E V V A I +
Sbjct: 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151
Query: 265 ----ALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGP 320
+ + + ++L I R D G+Y A + V V P
Sbjct: 152 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211
Query: 321 P 321
Sbjct: 212 G 212
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 47.3 bits (113), Expect = 4e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 18/111 (16%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGE--EFTITVPFSGRPKPTPIWTVNGDEVSPDGRI- 402
G + +G I + L D V G+ E + V +W NG E++ +
Sbjct: 1 GSSGSSGPVLIVTPL--EDQQVFVGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFK 55
Query: 403 -KFETSENQTIYR---NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
++ ++ + + D G Y + ++ V +K
Sbjct: 56 ARYRFKKDGKRHILIFSDV--VQEDRGRYQVI----TNGGQCEAELIVEEK 100
Score = 30.0 bits (68), Expect = 0.47
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302
+++ + R + L + V++D G Y++
Sbjct: 47 ELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG 89
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 49.6 bits (118), Expect = 5e-07
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 43/188 (22%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+K+ ++ A+L I + +D+G+Y+ G D I V V + I
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRIL---- 125
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
+ E +T G PK IWT
Sbjct: 126 ----------------------------------VVDPVTSEHELTCQAEGYPKAEVIWT 151
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAKR--ATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ +V + + ++ S R T + + ++ + ++ + +
Sbjct: 152 SSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPE 211
Query: 449 KP--SPPQ 454
P PP
Sbjct: 212 LPLAHPPN 219
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 49.3 bits (117), Expect = 5e-07
Identities = 26/180 (14%), Positives = 49/180 (27%), Gaps = 48/180 (26%)
Query: 278 TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSM 337
+ SL + KD G+Y ++ ++ V +P
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQP--------------- 113
Query: 338 SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS 397
L + + TV + T+T S W N +
Sbjct: 114 ---------------------FLQVTNTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQ 151
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVG---SDSASCKVYVVDKPSPPQ 454
R+ + N + + + D+G Y ++ N V S+S + P
Sbjct: 152 LTERMTL-SQNNSILRIDPI--KREDAGEYQCEISNPVSVRRSNSIKLDIIF-----DPH 203
Score = 44.7 bits (105), Expect = 2e-05
Identities = 27/176 (15%), Positives = 60/176 (34%), Gaps = 25/176 (14%)
Query: 162 WVKLSEPFLNH---GWSINGQVCQIG-GRADVQTTKSETVLDIPFCSRSDTGHYSLTLEN 217
W K + ++ + N + G + + S L + D G Y+L + +
Sbjct: 33 WYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD 92
Query: 218 NLG-TATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAGTEKPKIS-----L 263
A+ + T+ V E + V+ + I
Sbjct: 93 ENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS----VTLTCLSNDIGANIQWLFNSQ 148
Query: 264 DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD-IEVVVVSKP 318
+ +R+ ++ + L I R+D+G Y+ E N + ++ I++ ++ P
Sbjct: 149 SLQLTERMT--LSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 31.9 bits (72), Expect = 0.34
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI------------KFETSENQTIY 413
V + V W G+ + D I S + IY
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAW-YKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 414 RNKS----AKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE 465
N S D G YT+ + + V Q L V++ T +
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYR-RTQATVRFHVHQPVTQPFLQVTNTTVK 123
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 49.4 bits (117), Expect = 5e-07
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQW-TPPISDGGSPITGYVVEMKDKTGNWEKA--VVVPAGET 70
P L+ + ++ W S + WE+A + + +
Sbjct: 106 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 165
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGP-GEASKPTAPIVAKPKNLAPRID 117
+ L Y+FQVR G S + P+ + K A D
Sbjct: 166 WICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALGKD 213
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 46.5 bits (111), Expect = 6e-07
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
++ L + V GE + S P W + G ++ + + I
Sbjct: 6 IEVEKPL--YGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHIL 62
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + +G + + ++ + V
Sbjct: 63 ILHNC-QLGMTGEVSF----QAANTKSAANLKV 90
Score = 31.1 bits (71), Expect = 0.19
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222
++LSEP ++ W + GQ ++ + +L + C TG S N A
Sbjct: 27 IELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAA 86
Query: 223 T 223
Sbjct: 87 N 87
Score = 28.0 bits (63), Expect = 2.3
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302
+ L + N +G +A N
Sbjct: 48 SPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT 82
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 46.3 bits (109), Expect = 9e-07
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWE-KAVVVPAGETSC 72
P + E + +QW P S I+ Y++ + K K +P S
Sbjct: 8 PVEVFITETPS-QPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSY 63
Query: 73 TVPGLIEGETYQFQVRAVNAAGPGEASK 100
T+ GL G Y+ Q+ ++ G E ++
Sbjct: 64 TIKGLKPGVVYEGQLISIQQYGHQEVTR 91
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 49.5 bits (117), Expect = 1e-06
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 15/187 (8%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
+ SL +++ + D GIY E + + V + P P D
Sbjct: 74 HLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LPEEPRDLRV 130
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
++ M ++T + EE ++ + R
Sbjct: 131 RVGDTTQM---RCSIQSTEE----KRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSL 183
Query: 390 TVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ V G I + + +I + +D G YT + + ++VV
Sbjct: 184 GRFRNRVDLTGDI---SRNDGSIKLQTV--KESDQGIYTCSIYVGKLESRKTIVLHVVQD 238
Query: 450 PSPPQGP 456
Sbjct: 239 EFQRTIS 245
Score = 38.3 bits (88), Expect = 0.004
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
++ S+ ++ D GIY I + VV T T +
Sbjct: 196 ISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQ 255
Query: 335 VSMS 338
++
Sbjct: 256 GILN 259
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 46.7 bits (110), Expect = 1e-06
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVSPDGRIKFETSENQTIYRNKSAK- 419
+ + GE+ + W + + + K
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 420 ------RATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+D G YT + + + S V V +KP
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 38.2 bits (88), Expect = 0.001
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+ ++L I R D G+Y A + V V KP
Sbjct: 69 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 32.8 bits (74), Expect = 0.085
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W S + Q G + K + L I +RSD G Y+ + L T
Sbjct: 44 WEYPSSKHQHKKLVNRDLKTQSGS----EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 99
Query: 222 ATASAHVT 229
S V
Sbjct: 100 KKNSTFVR 107
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 49.0 bits (116), Expect = 2e-06
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
P L T + L+W+ P+ + Y +E+++ A V + T+
Sbjct: 241 PVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVE---NETYTLKT 297
Query: 77 LIEGETYQFQVRAVNAAGPGEA---SKPTAPIVAKPKNLAPRID 117
E F VR+ + S+ + + ++L+ +
Sbjct: 298 TNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTL 341
Score = 42.5 bits (99), Expect = 2e-04
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 6/119 (5%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA 62
+ I D++ ++ ++ W P + + + +
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPG-IGVLLDTNYNLFYWYEGLDHALQC 184
Query: 63 ---VVVPAGETSCTVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI 116
+ C P + + + V + P +S T + K L P
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243
Score = 40.2 bits (93), Expect = 0.001
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 13 EPGKPTDLEATDW-DKDHVDLQWTPP--ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGE 69
+ P D E D ++ LQW PP + Y ++ ++ K ++
Sbjct: 31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWK-TIITKNL 89
Query: 70 TSCTVPGLIEGETYQFQVRAVNAAGPGE 97
L +G G
Sbjct: 90 HYKDGFDLNKGIEAXIHTLLPWQCTNGS 117
Score = 34.4 bits (78), Expect = 0.077
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 426 SYTIQLVNTVG-----SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS 480
+ I + + S + ++ + KP PP L + + L W PL +
Sbjct: 209 DFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY-LTFTRESSCEIKLKWSIPLGPIPA 267
Query: 481 PITNYVVE 488
+Y +E
Sbjct: 268 RCFDYEIE 275
Score = 33.6 bits (76), Expect = 0.15
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESC-SLSWKPPL--DDG 478
YT + T G S+S K +PPQ ++ D L W+PPL D
Sbjct: 7 AVGCLYTFLISTTFGCTSSSDTEI---KVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHF 62
Query: 479 GSPITNYVVE 488
Y ++
Sbjct: 63 KECTVEYELK 72
Score = 27.8 bits (61), Expect = 9.0
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 288 VRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347
+Y +G + + K PP + + W+PP+
Sbjct: 5 CLAVGCLYTFLISTTFGCTSSSDTEI---KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDH 61
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 45.5 bits (108), Expect = 2e-06
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
R++ AG T++ + + W +G ++S +++ E + A
Sbjct: 19 REVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQA-GQA 76
Query: 423 DSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
++G Y+ + G S ++ V +
Sbjct: 77 EAGEYSCE----AGGQQLSFRLQVAGQCF 101
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 422
+ V G+ + + W +G ++ R + T E + + A
Sbjct: 17 ESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIPA---- 70
Query: 423 DSGSYTIQLVNTVGSDSASCKVYV 446
DSG Y + GSD+ V V
Sbjct: 71 DSGLYACVTSSPSGSDTTYFSVNV 94
Score = 36.7 bits (85), Expect = 0.002
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
W +G R T + +++ +D+G Y+ + G+ T V
Sbjct: 42 WLRDGVQLVESNR----TRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 32.5 bits (74), Expect = 0.059
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ +++S+ DSG+Y + G D V V
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 47.4 bits (112), Expect = 2e-06
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 14 PGKPTDLEAT----DWDKDHVDLQWTPPIS---DGGSPITGYVVEMKDK-TGNWEKAVVV 65
P P +L + K ++ ++W+PP G Y + +K + WE +
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE--IHF 160
Query: 66 PAGETSCTVPGLIEGETYQFQVRAVNAAGP-GEASKPT 102
+T + L G+ Y QVR G S T
Sbjct: 161 AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
Score = 46.2 bits (109), Expect = 6e-06
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 4/104 (3%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW-EKAVVVPAGETSC 72
PGKP + +K+ W P +DGG P + ++ E + G SC
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPG-TDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 73 TVP--GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
TY V A N G + + + + P
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPP 106
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 48.3 bits (114), Expect = 3e-06
Identities = 28/181 (15%), Positives = 43/181 (23%), Gaps = 38/181 (20%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPES 334
+ + +L I N +DSG Y D DI V TV P
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL----------TVIPSQ 226
Query: 335 VSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI----WT 390
D + PKI V GE IT W
Sbjct: 227 ----------DHRFKLILDPKI---------NVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 391 VNGDEVSPDGRIKFETSENQTIYRN-----KSAKRATDSGSYTIQLVNTVGSDSASCKVY 445
+ + + ++ +YT + N + + V
Sbjct: 268 NPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Query: 446 V 446
+
Sbjct: 328 L 328
Score = 41.7 bits (97), Expect = 3e-04
Identities = 25/189 (13%), Positives = 39/189 (20%), Gaps = 44/189 (23%)
Query: 281 SLNIKNSVRKDSG-IYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSW 339
L I N DS Y G + I + KP
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKP--------------------- 128
Query: 340 KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPF-SGRPKPTPIWTVNGDEVSP 398
P ++ + + W N E+
Sbjct: 129 --------------PSCIP--ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172
Query: 399 DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS-PPQGPL 457
DG ++ +N I + + DSG Y + V + P
Sbjct: 173 DGTKYSQSGQNLII---HNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228
Query: 458 DVSDITPES 466
I
Sbjct: 229 RFKLILDPK 237
Score = 36.0 bits (82), Expect = 0.023
Identities = 28/171 (16%), Positives = 46/171 (26%), Gaps = 35/171 (20%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W N Q I G + ++S L I D+G Y + + V+
Sbjct: 163 WYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC-- 217
Query: 234 TDNNVHEGKAYEYRVSAV---------------NAAGTEKPK--------------ISLD 264
V + + +++ A T I LD
Sbjct: 218 KILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLD 277
Query: 265 ALIGKRIKEFVTSTTASLNIKNSVRKDSG-IYKIEAKNDYGIDMADIEVVV 314
+ + T A+L +N + G Y N Y VV+
Sbjct: 278 FGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 46.1 bits (109), Expect = 4e-06
Identities = 20/168 (11%), Positives = 34/168 (20%), Gaps = 53/168 (31%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
F L IKN R DSG Y + + G + + + +
Sbjct: 55 FEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK----------- 103
Query: 334 SVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNG 393
P I + S T+T
Sbjct: 104 --------------------PMIYWECS----------NATLTCEVLEGTDVELKLYQGK 133
Query: 394 DEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
+ + + + + VN V +S
Sbjct: 134 EHLRSLRQKTMSYQWT------------NLRAPFKCKAVNRVSQESEM 169
Score = 39.6 bits (92), Expect = 7e-04
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 9/119 (7%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTP--IWTVNGDEVS--PDGRIKFETSENQTIYRNKSAK- 419
+ G + +P W V+ F S I N K
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 420 ---RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE-SCSLSWKPP 474
DSG+Y + + +T G+ + + + + + +C +
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTD 124
Score = 28.4 bits (63), Expect = 3.5
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVN----AAGTEKP 259
+R D+G Y++T+ + GT + + + + S
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKALD---LRILEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
++ L GK + + +K +A N + V
Sbjct: 126 ELKL--YQGKE----HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 47.4 bits (112), Expect = 4e-06
Identities = 40/284 (14%), Positives = 72/284 (25%), Gaps = 53/284 (18%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEFTDNNVHEG 241
+ + + TG Y+ + N L +S +V + +
Sbjct: 43 TFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGL 99
Query: 242 KAYEYRVSAV----NAAGTEKPKISLDALIGKRI---KEFVTSTTASLNIKNSVRK-DSG 293
+ S + + SL GK + FV + A + IKN R
Sbjct: 100 PLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 294 IYKIEAKNDYGIDM-ADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITG 352
+ A+ D + V +V S
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAI----PVVSVPETSH----------------- 198
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
+ G+ FT+ W + ++K +
Sbjct: 199 -------------LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGD 245
Query: 412 IYRNKSAK------RATDSGSYTIQLVNTVGSDSASCKVYVVDK 449
+ R DSG + NT GS + + + VV+K
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
Score = 43.2 bits (101), Expect = 1e-04
Identities = 19/186 (10%), Positives = 34/186 (18%), Gaps = 46/186 (24%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT 329
E V + + + +G Y N + I V V
Sbjct: 47 YFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVG----- 98
Query: 330 VTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW 389
+ + + P +
Sbjct: 99 ---------------------------------LPLFGKEDSDALVRCPLTDPQVSQYSL 125
Query: 390 T-VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYT-IQLVNTVGSDSASCKVYVV 447
+G + D TI K+ KRA + S + V
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITI---KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR 182
Query: 448 DKPSPP 453
+
Sbjct: 183 EAIKAI 188
Score = 29.3 bits (65), Expect = 2.8
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 7/63 (11%)
Query: 174 WSINGQVCQIGGRADVQTTKSET-------VLDIPFCSRSDTGHYSLTLENNLGTATASA 226
W Q + + L I D+G + N G+A +
Sbjct: 223 WLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTT 282
Query: 227 HVT 229
+
Sbjct: 283 TLK 285
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 44.3 bits (105), Expect = 4e-06
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 6/86 (6%)
Query: 362 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 421
R + V AG W G ++S + T + +
Sbjct: 15 PRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREV-GP 72
Query: 422 TDSGSYTIQLVNTVGSDSASCKVYVV 447
D GSY + GS + V+
Sbjct: 73 ADQGSYAVI----AGSSKVKFDLKVI 94
Score = 28.1 bits (63), Expect = 2.4
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTE 232
W G + + T + L + +D G Y++ G++ + E
Sbjct: 41 WQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVIE 95
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 45.0 bits (106), Expect = 4e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 11/103 (10%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPTPIWTVNG---DEVSPDGRIKFETSENQTIYRNK 416
+ TV GE+ T KPT W ++ + + +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 417 -----SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
+ +G+Y ++ DS S + V +
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
Score = 40.0 bits (93), Expect = 3e-04
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
+ + + T + I + +G Y+ E D ++ V G
Sbjct: 62 LKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 38.0 bits (88), Expect = 0.001
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W K L G+ Q+ + + + I + G+Y +
Sbjct: 44 WFKGKWMDLASK---AGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF 100
Query: 222 ATASAHVT 229
+ S +
Sbjct: 101 DSCSFDLE 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 5e-06
Identities = 75/479 (15%), Positives = 135/479 (28%), Gaps = 161/479 (33%)
Query: 114 PRIDRSTL------NDVKIKA---GQSFSFD-VKEFRELSYTKSP--LRALGVRANSTKG 161
+ S L + ++ A GQ + D +E R+L Y + L + T
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGDLIKFSAET-- 194
Query: 162 WVKLSE---------PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYS 212
LSE G +I + D S + P HY
Sbjct: 195 ---LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYV 250
Query: 213 LTLENNLG---------------------TATASAHV-TGTEFTDNNVHEGKAYEYRVSA 250
+T LG TA A A + F + KA +
Sbjct: 251 VTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR---KAITV-LFF 305
Query: 251 VNAAGTEK-PKISLDALIGKRIKEFVTS--TTAS--LNIKNSVRKDSGIYKIEAKNDYGI 305
+ E P SL I +++ + + S L+I N + ++ + N +
Sbjct: 306 IGVRCYEAYPNTSLPPSI---LEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLP 361
Query: 306 DMADIEV--------VVVSKPGPPTGPIDYTTVTPESV--------SMSWKPPVDDGGTP 349
+E+ +VV +GP P+S+ +D P
Sbjct: 362 AGKQVEISLVNGAKNLVV------SGP-------PQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 350 ITG-APKITSDLSIRDMTVLAGEEF-TITVPFSGRPKPTPIWTVNGDEVSPD---GRIKF 404
+ K ++ F + PF + + D ++ D + F
Sbjct: 409 FSERKLKFSN-------------RFLPVASPFH-----SHLLVPASDLINKDLVKNNVSF 450
Query: 405 ETSENQ-TIYRNKSAK--RATDSGSYTIQLVNTVGSD----------SASCKVYVVDKPS 451
+ Q +Y R SGS + ++V+ + A+ +++D
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVL-SGSISERIVDCIIRLPVKWETTTQFKAT---HILD--- 503
Query: 452 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDLFISKSEVKTGS 510
GP S + +T+ + TGV I +
Sbjct: 504 --FGPGGASGL-----------------GVLTHRNKD----GTGVR--VIVAGTLDINP 537
Score = 33.1 bits (75), Expect = 0.29
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 26/94 (27%)
Query: 3 HSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPI---SDG------GSPITGYVVEM- 52
HS L+ D DL + + D+Q P+ DG I+ +V+
Sbjct: 428 HSHLLVPASDL--INKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 53 KDKTGNWEKAVVVPA------GETSCTVPGLIEG 80
WE A G PG G
Sbjct: 484 IRLPVKWETTTQFKATHILDFG------PGGASG 511
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 46.2 bits (109), Expect = 5e-06
Identities = 23/186 (12%), Positives = 40/186 (21%), Gaps = 49/186 (26%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDY 327
G +KE K G Y + + + P
Sbjct: 38 GVVLKEDALPGQ-KTEFKVDSDDQWGEYSCVFLPEPM---GTANIQLHGPP--------- 84
Query: 328 TTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTP 387
+ + GE + P T
Sbjct: 85 ---------------------RVKAVK--------SSEHINEGETAMLVCKSESVPPVTD 115
Query: 388 I-WTVNGDEVSP------DGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA 440
W D + R +S+ ++ ++ D G Y ++ GSD A
Sbjct: 116 WAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Query: 441 SCKVYV 446
+ V
Sbjct: 176 IITLRV 181
Score = 37.7 bits (87), Expect = 0.004
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 168 PFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAH 227
H W G V + + + S G YS TA+
Sbjct: 28 EVTGHRWLKGGVVLK-------EDALPGQKTEFKVDSDDQWGEYSCVFLPE-PMGTANIQ 79
Query: 228 VTG-----TEFTDNNVHEG---------KAYEYRVSAVNAAGTEKPKISLDALIGKRIKE 273
+ G + +++EG ++ T+ +L R
Sbjct: 80 LHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 274 FVTSTTASLNIKN-SVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
+ + L+I+N ++ D G Y+ + G D A I + V S
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 46.2 bits (109), Expect = 7e-06
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 14 PGKPTDLEATD-WDKDHVDLQWTPPISDGGSPITGYVVEMK--DKTGNWEKAVVVPAGET 70
P P+ ++A + + + W P+ + + + K W+ V A
Sbjct: 110 PLPPSSVKAEITINIGLLKISWEKPVFPENNLQ--FQIRYGLSGKEVQWKMYEVYDAKSK 167
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
S ++P Y QVR G G S + P
Sbjct: 168 SVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205
Score = 30.8 bits (69), Expect = 0.78
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 14/92 (15%)
Query: 23 TDWDKDHVDLQWTPPISDGGSPITGY------------VVEMKDKTGNWEKAVVVPAGET 70
TD + +W+ + + + + + G
Sbjct: 11 TDGYLTKMTCRWSTS-TIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFY 69
Query: 71 SCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
C + Y +R ++ G + S PT
Sbjct: 70 ECIFQPIFLLSGYTMWIRINHSLGSLD-SPPT 100
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 45.9 bits (108), Expect = 7e-06
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWE-KAVVVPAGET 70
E KP ++ + ++ LQW P + Y V+ K W+ K E
Sbjct: 7 ESLKPQRVQFQSRNFHNI-LQWQPG-RALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQEL 64
Query: 71 SC--TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
SC T E Y +VRA +A E S + P
Sbjct: 65 SCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110
Score = 40.5 bits (94), Expect = 5e-04
Identities = 10/100 (10%), Positives = 20/100 (20%), Gaps = 12/100 (12%)
Query: 14 PGKPTDLEATDWDKDHVDLQW--TPPISDGGSPIT-------GYVVEMKDKTGNWEKAVV 64
P V L P ++ Y V + ++ V
Sbjct: 108 IDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKV 166
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAA--GPGEASKPT 102
+ + L +Y + S+
Sbjct: 167 YEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEER 206
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 43.1 bits (102), Expect = 9e-06
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 413
+I + + ++ G + G P P W N + T E + +Y
Sbjct: 4 LQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLY 52
Query: 414 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
G+Y + N S + ++D+ +
Sbjct: 53 MVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 33.8 bits (78), Expect = 0.019
Identities = 5/44 (11%), Positives = 12/44 (27%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPG 319
T + + G Y ND + +++ +
Sbjct: 46 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 27.3 bits (61), Expect = 3.4
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 191 TTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
T +++ + +P+ G Y + N+ + +
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKK 80
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 47.0 bits (112), Expect = 1e-05
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV-NGDEVSPDGRIKFETSENQT 411
+I D + + V G G P P +W VS + + T
Sbjct: 384 RARIR-DRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 412 IY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ R D+G+Y N G+DS ++V
Sbjct: 443 LEVRYAQV---QDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 35.1 bits (81), Expect = 0.056
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 234 TDNNVHEGKAYEYRVSAV-NAAGTEKPKIS--------LDALIGKRIKEFVTSTTASLNI 284
V EG V V A G P I + A R+ F T L +
Sbjct: 393 QQVFVDEGHT----VQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT---LEV 445
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVS 316
+ + +D+G Y A N G D + V S
Sbjct: 446 RYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 33.9 bits (78), Expect = 0.11
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 181 CQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
+ GR V + L++ + D G Y N G + AH+
Sbjct: 429 AKSNGRLTVF---PDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 45.4 bits (107), Expect = 1e-05
Identities = 23/185 (12%), Positives = 46/185 (24%), Gaps = 46/185 (24%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
++E + A +I + +DSG Y+ D + V V +
Sbjct: 58 LEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-------- 109
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
R + V E +T G P W
Sbjct: 110 -------------------------------TRILEVPGTGEVQLTCQARGYPLAEVSWQ 138
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSA--KRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ + +Y+ S + S +++ N + S + +
Sbjct: 139 NVSVPANTS-----HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLS 193
Query: 449 KPSPP 453
+ P
Sbjct: 194 RMEPK 198
Score = 36.6 bits (84), Expect = 0.010
Identities = 21/159 (13%), Positives = 37/159 (23%), Gaps = 16/159 (10%)
Query: 366 TVLAGEEFTITVPFSGRPKPTPIWTVNG----DEVSPDGRIKFETSENQTIYRNKSAK-- 419
TV G ++ F R + + + E Q
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 420 --RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPE---SCSLSWKPP 474
+ DSG Y ++ D V V + T E +C P
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 475 -----LDDGGSPITNYVVEKYESATGVSDLFISKSEVKT 508
+ T+++ S L + +
Sbjct: 133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRN 171
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 46.4 bits (109), Expect = 1e-05
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+ + D+ P ++ A + + +QW P+S Y V++ + + +
Sbjct: 209 FDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ 267
Query: 62 AVVVPAGETSCTVPGLIEGETYQFQVRA 89
+ T+ + + + Y QVRA
Sbjct: 268 IEKL---MTNAFISIIDDLSKYDVQVRA 292
Score = 39.1 bits (90), Expect = 0.003
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPIT-GYVVEMKDKTGNWEKAVVVPAGETSCTVP 75
P + V LQW P + Y V++ + + + S V
Sbjct: 15 PVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRIT----ESKAVT 70
Query: 76 GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
L G + + N +S +A + A P
Sbjct: 71 ILHMGFSASVRTILQNDHSLLASSWASAELHAPP 104
Score = 29.5 bits (65), Expect = 2.7
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 2/44 (4%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPIT-NYVVEKYE 491
PP + L WKP D + Y V+
Sbjct: 11 SLLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINA 53
Score = 27.9 bits (61), Expect = 8.3
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Query: 426 SYTIQLVNTVGSDSASCKVYVVD---KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 482
+ + + + +++ + + +PP + I S+ W+ P+
Sbjct: 194 AVLVNGSSKHSAIRPFDQLFALHAIDQINPPLN-VTAE-IEGTRMSIQWEKPVSAFPIHC 251
Query: 483 TNYVVE 488
+Y V+
Sbjct: 252 FDYEVK 257
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFET 406
G+ ++ + V G T+T +P P W +G +
Sbjct: 4 GSSGLEEVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVL-- 59
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVV 447
+ D G+Y+ ++ S V +
Sbjct: 60 ----IL----PEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 29.7 bits (67), Expect = 0.61
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 194 SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
VL +P D G YS ++ S V+
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 28.5 bits (64), Expect = 1.3
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV-VVVSKP 318
+ L + +D G Y A + V + + +P
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 43.9 bits (103), Expect = 1e-05
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 412
G + G P P W G + ++ + +
Sbjct: 21 MAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 413 YRNKSAK------------RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
+ + + D+G+Y + N + + V K Q + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV--KWVRAQAVVLV 135
Score = 33.1 bits (75), Expect = 0.074
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ ++++I V +D+G Y+ A ND + V
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 46.3 bits (110), Expect = 1e-05
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW-TVNGDEVSPDG-RIKFETSENQT 411
P I D+ V G + S + W T NG ++ +++ + T
Sbjct: 342 PVIVE--PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 412 IY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ N + D+G YT + N+VG+ +AS + V
Sbjct: 399 LNFTNVTV---QDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 38.6 bits (90), Expect = 0.005
Identities = 22/96 (22%), Positives = 27/96 (28%), Gaps = 16/96 (16%)
Query: 235 DNNVHEGKAYEYRVSAVNAAGTEKPKIS---------LDALIGKRIKEFVTSTTASLNIK 285
D NV EG A A T +S RI T LN
Sbjct: 350 DLNVTEGMA----AELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---LNFT 402
Query: 286 NSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
N +D+G+Y N G A + V
Sbjct: 403 NVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 34.3 bits (79), Expect = 0.098
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W+ + + HG R V S+ L+ + DTG Y+ + N++G
Sbjct: 374 WITPNGTVMTHGAY--------KVRIAVL---SDGTLNFTNVTVQDTGMYTCMVSNSVGN 422
Query: 222 ATASAHVTGTEFTDNNVH 239
TASA + T ++ H
Sbjct: 423 TTASATLNVTGTHHHHHH 440
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 346 GGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFE 405
G + +G ++ + L D+ V GE+ ++ S + T W +NG+E+ +
Sbjct: 1 GSSGSSGTARLVAGL--EDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQV 56
Query: 406 TSENQTIYRNKSAKR---------ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
+ + DSG+ + + S + + + P G
Sbjct: 57 EPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGPSSG 112
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 44.6 bits (105), Expect = 2e-05
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG--YVVEMKDKTGNWEKAVV-VPAGET 70
P P +L D + L W+ P Y V + + + + V E
Sbjct: 98 PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 157
Query: 71 SCTVPG--LIEGETYQFQVRAVNAAGPGEASKPTAPI 105
S + L G +Y+ +VRA A S+ +
Sbjct: 158 SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPST 194
Score = 30.4 bits (68), Expect = 1.2
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPL 475
+ + + V KP P L V ++ L+W P
Sbjct: 77 DLWAGQQLLWKGSFKPSEHV-KPRAPGN-LTVHTNVSDTLLLTWSNPY 122
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 45.3 bits (106), Expect = 2e-05
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 6/98 (6%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPG 76
T+L + + V W PP + Y DK
Sbjct: 7 VTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET-----RRSIEVP 61
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
L E Q + + S ++ P+
Sbjct: 62 LNERICLQVGSQCSTNES-EKPSILVEKCISPPEGDPE 98
Score = 41.0 bits (95), Expect = 6e-04
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEK 61
+++ +P P + + D + +QW P + + Y VE+ +
Sbjct: 188 SFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTETHN 245
Query: 62 AVVVPAGE-------------TSCTVPGLIEGETYQFQVRA 89
V + + VPG++ ++R
Sbjct: 246 VFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 37.6 bits (86), Expect = 0.007
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVE 488
+ PP L VS + +W PP + Y
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSH 41
Score = 31.4 bits (70), Expect = 0.60
Identities = 24/246 (9%), Positives = 62/246 (25%), Gaps = 49/246 (19%)
Query: 269 KRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP--GPPTGPID 326
+ T + + + + + + + + +S P P + +
Sbjct: 47 DKKIAPETRRSIEVPLNERI---CLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTE 103
Query: 327 YTTVTPESVSM--SWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPK 384
+ M SW P + +T+ K
Sbjct: 104 LQCIWHNLSYMKCSWLPGRNTSPD----------------------TNYTLYYWHRSLEK 141
Query: 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNT-----VGSDS 439
+ + ++ + +++Q++ +
Sbjct: 142 IHQCENIFREGQYFGCSFDLTKVKDSSFE------------QHSVQIMVKDNAGKIKPSF 189
Query: 440 ASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGVSDL 499
+ KP PP ++S + + W+ P + + Y VE S T ++
Sbjct: 190 NIVPLTSRVKPDPPHI-KNLS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTETHNV 246
Query: 500 FISKSE 505
F +
Sbjct: 247 FYVQEA 252
Score = 30.6 bits (68), Expect = 1.3
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 4 SVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA- 62
+ D T+L+ + ++ W P SP T Y + ++
Sbjct: 88 KCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG--RNTSPDTNYTLYYWHRSLEKIHQC 145
Query: 63 --VVVPAGETSCTVP----GLIEGETYQFQVRAVNAAGPGEAS 99
+ C+ E + Q+ + AG + S
Sbjct: 146 ENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS 188
Score = 27.9 bits (61), Expect = 8.8
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 316 SKPGPPTGPIDYTTVTPESVSMSWKPPVDDGG 347
++ PP + + +V +W PP
Sbjct: 1 TETQPPVTNLSVSVENLCTVIWTWNPPEGASS 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 361 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 420
G+ TI + + + ++V G + N ++ K +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV--Q 309
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
D G YT + +++ S ++ V G D
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVY--NFTLHGHHD 345
Score = 44.8 bits (106), Expect = 4e-05
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 252 NAAGTEKPKISL----DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDM 307
+ K+ + + ++ + V+ L K +D G+Y A + +
Sbjct: 269 DTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNET 328
Query: 308 ADIEVVVVSKPGPPTGPIDYTTVTPES 334
+E+ V + P S
Sbjct: 329 LSVELKVYNFTLHGHHDTLNAAADPWS 355
Score = 35.2 bits (81), Expect = 0.047
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
S + + G + ++ L D G Y+ T S + F
Sbjct: 280 VSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNF 338
Query: 234 TDNNVHE 240
T + H+
Sbjct: 339 TLHGHHD 345
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 43.8 bits (103), Expect = 3e-05
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 57/179 (31%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT 331
+ L IKN +DS Y E ++ +++++V
Sbjct: 60 RSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLTANS---------- 105
Query: 332 PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV 391
D +L G+ T+T+ P+
Sbjct: 106 --------------------------------DTHLLQGQSLTLTLESPPGSSPSVQCR- 132
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
SP G+ +T+ ++ DSG++T ++ + V+
Sbjct: 133 -----SPRGKN---IQGGKTLSVSQL--ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 40.0 bits (93), Expect = 6e-04
Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 20/165 (12%)
Query: 162 WVKLSEPFL--NHGWSINGQVCQIGGRADVQTTKSET---VLDIPFCSRSDTGHYSLTLE 216
W ++ + N G + ++ RAD + + + L I D+ Y +E
Sbjct: 29 WKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE 88
Query: 217 NNLGTATASAHVTGTEFTDNNVHEGKAYEYRVSAV---NAAGTEKPKISLDALIGKRIKE 273
+ T +D ++ +G+ S + P + + +
Sbjct: 89 DQKEEVQLL-VFGLTANSDTHLLQGQ------SLTLTLESPPGSSPSVQC-----RSPRG 136
Query: 274 FVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+L++ +DSG + + I++VV++
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI-YRNKSAKRATD 423
+ G+ +T S + W + + F T + R S + D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 424 SGSYTIQLVNTVGSDSAS--CKV 444
G++ + + N DS + C+V
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEV 87
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 43.2 bits (101), Expect = 3e-05
Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 9/119 (7%)
Query: 344 DDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW--------TVNGDE 395
DD + S D TV+AG + + W
Sbjct: 27 DDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKR 86
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ 454
D RI+ TS + + S D G YT + T+ +A V V+ P P
Sbjct: 87 ALRDNRIQLVTSTPHELSISISNVALADEGEYTCS-IFTMPVRTAKSLVTVLGIPQKPI 144
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 44.5 bits (104), Expect = 3e-05
Identities = 26/185 (14%), Positives = 47/185 (25%), Gaps = 29/185 (15%)
Query: 274 FVTSTTASLNIKNSVRKDSGIYK-----IEAKNDYGIDMADIEVVVVSKPGPPTGPIDYT 328
+L + + +D G Y + ++G+D + + V
Sbjct: 84 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN----VH 139
Query: 329 TVTPESVSMSWKPPVDDGGT-----PITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP 383
T E V VD+G P T E T +
Sbjct: 140 VSTAEVVQ------VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193
Query: 384 KPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCK 443
S + + S + + A + TD+G +L G A
Sbjct: 194 FGI-------TWFSSEIAGRASFSGARNLV--IRAAKITDAGRVWCELATGQGELDADRS 244
Query: 444 VYVVD 448
++
Sbjct: 245 STILK 249
Score = 28.0 bits (61), Expect = 6.9
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 182 QIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
+I GRA ++ L I +D G L G A T
Sbjct: 202 EIAGRASFSGARN---LVIRAAKITDAGRVWCELATGQGELDADRSST 246
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 42.7 bits (100), Expect = 3e-05
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 11/108 (10%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW--------TVNGDEVSPDGRIKFE 405
+T+ +TV G+ T+ S R + W +N V + + +
Sbjct: 2 GSLTN--HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 406 TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 453
+ D G Y + + KV V+
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCL-HYSDSVSTKEVKVIVLATMKGE 106
Score = 28.0 bits (62), Expect = 3.0
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPP 321
++ S+ + N +D G+YK +D + +++V+V++
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGE 106
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 45.1 bits (106), Expect = 3e-05
Identities = 31/289 (10%), Positives = 69/289 (23%), Gaps = 62/289 (21%)
Query: 189 VQTTKSETVLDIPFCSRSDTGHYSLTLENN-LGTATASAHVT-------GTEFTDNNVHE 240
++ + ++ + + D G Y G + ++T E T +
Sbjct: 85 LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRA 144
Query: 241 GKAYEYRVSAVN---AAGTEKPKIS-------LDALIGKRIKEFVTSTTASLNIKNSVRK 290
K + +V A G +S R + + + S
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA 204
Query: 291 DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPI 350
+ + V +P T+
Sbjct: 205 HQQSLACIVNYHMDRFKESLTLNVQYEP--------EVTIEGFD---------------- 240
Query: 351 TGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSEN 409
L + +T P T WT + +N
Sbjct: 241 -------------GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA-----QN 282
Query: 410 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLD 458
+T++ + +G+Y + N +G+ S +V + + +
Sbjct: 283 RTLFFKGPINY-SLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 34.3 bits (78), Expect = 0.091
Identities = 23/188 (12%), Positives = 47/188 (25%), Gaps = 38/188 (20%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMS 338
++ + +D G+Y E G + + + V++KP
Sbjct: 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ------------ 139
Query: 339 WKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVS 397
+R + T +G+P W +
Sbjct: 140 ---------------------AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178
Query: 398 PDGRIKFE--TSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 455
I+ T + YR ++ A S + + S + V +P
Sbjct: 179 EYQEIRNPNGTVTVISRYRLVPSREA-HQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE 237
Query: 456 PLDVSDIT 463
D +
Sbjct: 238 GFDGNWYL 245
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 44.1 bits (103), Expect = 4e-05
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV---VPAGETS 71
KP ++ + +V LQWTPP G +T Y V+ W +
Sbjct: 11 KPANITFLSINMKNV-LQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ Y +VRA+ + ++ + P
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP 111
Score = 39.1 bits (90), Expect = 0.001
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 13/110 (11%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNW---------- 59
PF E A D+ + + T P +P V M+ N
Sbjct: 103 PFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPE-DLPVSMQQIYSNLKYNVSVLNTK 161
Query: 60 -EKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAK 108
+ + + L Y V + P ++P+ A+
Sbjct: 162 SNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRR-AQPSEKQCAR 210
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 42.1 bits (99), Expect = 4e-05
Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG------RIKFET 406
P+I S D+ V GE T+ GRP PT W G+ V D R+ +
Sbjct: 9 PPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 407 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSD-SASCKVYVVDKPS 451
+ K D G Y N +G S + V
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 44.1 bits (104), Expect = 5e-05
Identities = 43/284 (15%), Positives = 76/284 (26%), Gaps = 66/284 (23%)
Query: 181 CQIGGRADVQTTK----------SETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTG 230
C++ +T+ S I S +D+G Y + + +
Sbjct: 23 CEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR 82
Query: 231 TEFT----DNNVHEGKAYEYRVSAVNAAGTEKPKISL--DALIGKRIKEFVTSTTASLNI 284
EG+ R A + + GK K F ++L I
Sbjct: 83 GWLLLQVSSRVFTEGEPLALRCHA--WKDKLVYNVLYYRN---GKAFKFF--HWNSNLTI 135
Query: 285 KNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVD 344
+ +G Y + A I V V P + S
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP-----VLNASVTS---------- 180
Query: 345 DGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRP-KPTPIWTVNGDEVSPDGRIK 403
+L G T++ +P + S R +
Sbjct: 181 ---------------------PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219
Query: 404 FETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYV 446
+SE Y+ +A+R DSG Y + G+ S ++ +
Sbjct: 220 NTSSE----YQILTARRE-DSGLYWCEAATEDGNVLKRSPELEL 258
Score = 42.2 bits (99), Expect = 2e-04
Identities = 25/183 (13%), Positives = 45/183 (24%), Gaps = 51/183 (27%)
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
++T S I ++ DSG Y+ + D +E+
Sbjct: 41 TATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLL-------------- 86
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTV 391
L + GE + + + ++
Sbjct: 87 ---------------------------LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR 119
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 451
NG F + N TI + +G+Y + SA V V +
Sbjct: 120 NGKAFKF-----FHWNSNLTI----LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170
Query: 452 PPQ 454
P
Sbjct: 171 APV 173
Score = 38.0 bits (88), Expect = 0.005
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 18/140 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT---- 229
+ NG+ + + L I + S G Y + +A VT
Sbjct: 117 YYRNGKA--------FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168
Query: 230 -----GTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNI 284
+ + EG ++ +G + +T++ I
Sbjct: 169 FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-NTSSEYQI 227
Query: 285 KNSVRKDSGIYKIEAKNDYG 304
+ R+DSG+Y EA + G
Sbjct: 228 LTARREDSGLYWCEAATEDG 247
Score = 34.1 bits (78), Expect = 0.081
Identities = 20/107 (18%), Positives = 31/107 (28%), Gaps = 16/107 (14%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTI 412
IT L ++V E T+ P + W +NG + + I
Sbjct: 2 AVIT--LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRI 52
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
DSG Y Q + SD +++ Q V
Sbjct: 53 TS----ASVNDSGEYRCQRGLSGRSDPIQLEIHRG--WLLLQVSSRV 93
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 41.1 bits (96), Expect = 7e-05
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPTPIWT--VNGDEVSPDG-RIKFETSENQTIYRNK 416
+D V G T + +G P W D S G ++ S ++
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 417 S-----AKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ +GSY ++ D ++ + V +
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 37.7 bits (87), Expect = 0.001
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 235 DNNVHEGKAYEYRVSAVNAAGTEKPKIS--------LDALIGKRIK------EFVTSTTA 280
D V G + + A+ + P + L + +G+ ++
Sbjct: 13 DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
L+I ++ +G Y+ E D ++ + V
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 32.3 bits (73), Expect = 0.086
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 162 WVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGT 221
W K L+ S GQ Q+ D + L I + TG Y +
Sbjct: 41 WFKGKWVDLS---SKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF 97
Query: 222 ATASAHVT 229
++ ++T
Sbjct: 98 DCSNFNLT 105
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 44.2 bits (103), Expect = 7e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 27 KDHVDLQWTPPISDGGSPIT-----GYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGE 81
D + P G +P+ Y + + T N E+ ++ +T TVP L
Sbjct: 321 SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEK--KTDVTVPNLKPLT 378
Query: 82 TYQFQVRAVNAAGP-GEASKPTAPIVAK 108
Y + RA ++S + + K
Sbjct: 379 VYCVKARAHTMDEKLNKSSVFSDAVCEK 406
Score = 43.1 bits (100), Expect = 1e-04
Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 49/287 (17%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNWEKAVV---VPAGETS 71
P +E D + + L+W G+ + + + NW K + + + +
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 66
Query: 72 CTVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRI--------------- 116
+ L E + ++RA + K + P +
Sbjct: 67 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 126
Query: 117 -----------DRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRA-----LGVRANSTK 160
S + I S + E + L L V+A
Sbjct: 127 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 186
Query: 161 GWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVL-------DIPFCSRSDTGHYSL 213
W ++ + +V VL ++ F +
Sbjct: 187 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKR 246
Query: 214 TLENNLGTATASAHVTGTEFTD----NNVHEGKAYEYRVSAVNAAGT 256
N+L + T NV + Y RV A + T
Sbjct: 247 NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 293
Score = 36.1 bits (82), Expect = 0.027
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 32 LQWTPPISDGGSPITGYVVEMKDKTGNW-----EKAVVVPAGETSCTVP-GLIEGETYQF 85
L+W ++ + +K GN + T C P + + Y
Sbjct: 224 LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLL 283
Query: 86 QVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+V+A + S+ L P
Sbjct: 284 RVQASDGNNTSFWSEEIKFDTEIQAFLLP 312
Score = 30.4 bits (67), Expect = 1.7
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 12 DEPGKPTDLEATDWDKDHVDLQWTPPISDGGS-----PITGYVVEMKDKTGNWEKAVVVP 66
P ++ DK + + +P D Y + + + E+ +
Sbjct: 103 KAQIGPPEVHLEAEDK-AIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI 161
Query: 67 AGETSCTVPGLIEGETYQFQVRAVNAAG 94
+ + L TY +V+A
Sbjct: 162 --YSRHKIYKLSPETTYCLKVKAALLTS 187
Score = 28.0 bits (61), Expect = 7.6
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 423 DSGSYTIQLVNTVG---SDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGG 479
G Y +++ + G S + + + + P+ +S + P G
Sbjct: 277 QKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGN 336
Query: 480 SPITNYVVEKYE 491
+P+ YE
Sbjct: 337 TPVIQDYPLIYE 348
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 43.8 bits (102), Expect = 8e-05
Identities = 38/287 (13%), Positives = 72/287 (25%), Gaps = 49/287 (17%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-TGNW-EKAVVVPAGETSC- 72
P +E D + + L+W G+ + + + NW + + T C
Sbjct: 6 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 73 -TVPGLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLND---VKIKA 128
+ L E + ++RA + K + P + + + I
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122
Query: 129 -----------GQSFSFDV------------KEFRELSYTKSPLRALG-----VRA--NS 158
G SF++ + E + L V+A +
Sbjct: 123 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLT 182
Query: 159 TKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLT---- 214
+ S N VQ D + + + +
Sbjct: 183 SWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKR 242
Query: 215 ----LENNLGTATASAHVTGTEFT-DNNVHEGKAYEYRVSAVNAAGT 256
+V T+ NV + Y RV A + T
Sbjct: 243 NPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNT 289
Score = 43.0 bits (100), Expect = 1e-04
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 32 LQWTPPISDGGSPITGYVVEMKDKTGN-WEKAVVVPAGE----TSCTVP-GLIEGETYQF 85
L+W ++ + +K GN K +P E T C P + + Y
Sbjct: 220 LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLL 279
Query: 86 QVRAVNAAGPGEASKPTAP 104
+V+A + S+
Sbjct: 280 RVQASDGNNTSFWSEEIKF 298
Score = 29.5 bits (65), Expect = 2.9
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 11/138 (7%)
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD---- 423
L E+ I + S K + +W ++G + I +S + N ++
Sbjct: 109 LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSP 168
Query: 424 SGSYTIQ------LVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDD 477
+Y ++ +G S + + P + ++ L W +
Sbjct: 169 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYAN 228
Query: 478 GGSPITNYVVEKYESATG 495
+ ++ + G
Sbjct: 229 MTFQVQ-WLHAFLKRNPG 245
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 40.8 bits (95), Expect = 1e-04
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCT 73
+ D+ A + + L W ++ S T Y + + +T + + E
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSN----LNVSEPRAV 62
Query: 74 VPGLIEGETYQFQVRAVNAAG---PGEASKPTAPIVAKPKN 111
+PGL Y V V PG T P+ + P +
Sbjct: 63 IPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPSGPSS 103
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 42.4 bits (99), Expect = 1e-04
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 38 ISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
+ D G V + + G E +V +G + + G Y + + G
Sbjct: 128 LEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFV-KAIGR 186
Query: 98 ASKPTAPIVAK 108
S + +
Sbjct: 187 YSAFSQTECVE 197
Score = 37.4 bits (86), Expect = 0.005
Identities = 25/144 (17%), Positives = 39/144 (27%), Gaps = 16/144 (11%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK------DKTGNW-EKAVVVPAG 68
P L + H+ L W+P Y VE + + W +
Sbjct: 9 APQQLSVLSTNMKHL-LMWSPV--IAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65
Query: 69 ETSCTVP-GLIEGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKI- 126
C V + Y +VRA + S P + L T + +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLV 125
Query: 127 ----KAGQSFSFDVKEFRELSYTK 146
G F F V +R +
Sbjct: 126 IELEDLGPQFEFLVAYWRREPGAE 149
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 41.1 bits (95), Expect = 1e-04
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDKTGNWEKA-------VVVP 66
PG P+ + + + D + L W PP S G I Y + +T + +
Sbjct: 8 PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65
Query: 67 AGETSCTVPGLIEGETYQ---------FQVRAVNAAGPGEASK 100
+TSCTV + F++ A N G G A++
Sbjct: 66 GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQ 108
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 42.1 bits (98), Expect = 2e-04
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 1 MDHSVLIKNPFDEPGKPTDLEATDWDKDHVDLQWTPPIS---DGGSPITGYVVEMKD-KT 56
+D V P ++ T + ++W P + G + Y ++ K+
Sbjct: 125 VDEIVQPDPPIALNWTLLNVSLTG-IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE 183
Query: 57 GNWEKAVVVPAGETSCTVPGLIEGETYQFQVRA 89
W+ + TS V L + Y+ +VR+
Sbjct: 184 TKWKMMDPIL--TTSVPVYSLKVDKEYEVRVRS 214
Score = 34.0 bits (77), Expect = 0.087
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKDK-----TGNWEK-AVVVPA 67
G+P + +++ WT + G + + T W++ V A
Sbjct: 30 SGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSA 89
Query: 68 GETSCTVP--GLIEGETYQFQVRAVNAAG 94
GE SC Y ++ +
Sbjct: 90 GENSCYFNSSFTSIAIPYCIKLTSNGGTV 118
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 41.7 bits (97), Expect = 2e-04
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 14 PGKPTDLEATDWDKDHVDLQWTPPISDGGSPITG----YVVEMKDKTGNWEKA-----VV 64
P P D+ T + W D + Y ++ +++ W + +
Sbjct: 101 PAPPFDVTVTF--SGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLIS 158
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
V + S + +Y+ QVRA G
Sbjct: 159 VDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSY 191
Score = 34.0 bits (77), Expect = 0.068
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 426 SYTIQLVNTVGSDSASCKVYVVD---KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 482
+++Q+ + G S C +++ KP+PP DV+ +SW+ +D +
Sbjct: 74 IFSVQITDQSGQYSQECGSFLLAESIKPAPPF---DVTVTFSGQYQISWRSDYEDPAFYM 130
Query: 483 TNYVVEKYE 491
++ YE
Sbjct: 131 LKGKLQ-YE 138
Score = 28.2 bits (62), Expect = 6.1
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 294 IYKIEAKNDYGIDMADIEVVVVS---KPGPPTGPIDYTTVTPESVSMSWKPPVDD 345
I+ ++ + G + +++ KP PP D T +SW+ +D
Sbjct: 74 IFSVQITDQSGQYSQECGSFLLAESIKPAPPF---DVTVTFSGQYQISWRSDYED 125
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 42.4 bits (100), Expect = 2e-04
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 16/109 (14%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV----SPDGRIKFETSE 408
AP I + RD+ + G + P + W + V S RI
Sbjct: 352 APFIMD--APRDLNISEGR--MAELKCRTPPMSSVKWLLPNGTVLSHASRHPRIS--VLN 405
Query: 409 NQTIY-RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP 456
+ T+ + +D+G YT + N G+ +AS + V +
Sbjct: 406 DGTLNFSHVLL---SDTGVYTCMVTNVAGNSNASAYLNV--STAGTHHH 449
Score = 35.9 bits (83), Expect = 0.032
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 281 SLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGP 324
+LN + + D+G+Y N G A + V
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV--STAGTHHH 449
Score = 32.0 bits (73), Expect = 0.43
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 184 GGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
R V ++ L+ SDTG Y+ + N G + ASA++
Sbjct: 398 HPRISVL---NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 40.9 bits (95), Expect = 3e-04
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 365 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 424
G+ ++T +G P W + +G++ E + + +
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWR-TQIDSPLNGKVTNEGTTSTLTMNP---VSFGNE 66
Query: 425 GSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVS 460
SY +V + P P+ L
Sbjct: 67 HSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP 102
Score = 34.0 bits (77), Expect = 0.075
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 253 AAGTEKPKISLDALIGKRIKEFVTS--TTASLNIKNSVRKDSGIYKIEAKNDYGIDMADI 310
G E P S I + VT+ TT++L + + Y A + I
Sbjct: 25 TTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGI 84
Query: 311 EVVVVSKPGPPTGPIDYTTVTPESVSMS 338
+V + S P P + + +++
Sbjct: 85 QVEIYSFPKDPEIHLSGPLEAGKPITVK 112
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 38.8 bits (90), Expect = 5e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 20 LEATDWDKDHVDLQWTPPIS--DGGSPITGYVVEMKDK-TGNWEKAVVVPAGETSCTVPG 76
+ +++ W P + D S + + + W+ V + T+ T+
Sbjct: 16 ARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQH--VELSNGTAHTITD 73
Query: 77 LIEGETYQFQVRAVNAAGPGEASKPTAPIVAKP 109
G+ Y QV A + G S + A P
Sbjct: 74 AYAGKEYIIQVAAKD-NEIGTWSDWSVAAHATP 105
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 40.2 bits (93), Expect = 6e-04
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 14 PGKPTDLEATDW-DKDHVDLQWTPP-ISDGGSPITGYVVEMKDKTG-NWEKAVVVPAGET 70
P P DL + + + + + + V + + N V + + +
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 71 SCTVPGLIEGETYQFQVRA 89
+ L Y+ +VR+
Sbjct: 173 TLLQRKLQPAAMYEIKVRS 191
Score = 31.3 bits (70), Expect = 0.56
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 427 YTIQLVNTVGSDSASCKVYVVD---KPSPPQGPLDVSDITPESCSLSWKPP 474
+ VG S +CK + KP P V +++
Sbjct: 87 GKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTS 137
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 40.9 bits (95), Expect = 7e-04
Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 71/231 (30%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYT-----TVTPE 333
ASL + +D G Y G DI + V++KP
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138
Query: 334 SVSMSWKPPVD----DGGTPITGAPK----------ITSDLSIR---------------- 363
VS +PP + + +TS +
Sbjct: 139 CVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEH 198
Query: 364 ---------------------------DMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDE 395
+ L E T+T P+PT W+
Sbjct: 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGP 258
Query: 396 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ P F ++ + K + + + N +G+ A V V
Sbjct: 259 LPP-----FAVAQGAQLLIRPVDK--PINTTLICNVTNALGARQAELTVQV 302
Score = 37.8 bits (87), Expect = 0.007
Identities = 35/177 (19%), Positives = 49/177 (27%), Gaps = 35/177 (19%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTP-----IWT-------------VNGDEVSPDGRIKF 404
+ G+ T+ W G S R++F
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 405 ETSENQTIYRNKSAK----RATDSGSYTIQLVNTV-GSDSASCKVYVVDKPSPPQGPLDV 459
+ RN S + R D G+YT V GS S + V+ KP V
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127
Query: 460 S-----DITPESCSLSWKPP------LDDGGSPITNYVVEKYE-SATGVSDLFISKS 504
S +PP D GG P T+ V + T S + S
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184
Score = 35.8 bits (82), Expect = 0.027
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+ F + A L I+ + + N G A++ V V
Sbjct: 256 MGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor
complex, fibronectin-III, cytokine, glycoprotein,
polymorphism, secreted, membrane; 1.90A {Homo sapiens}
PDB: 3dgc_R*
Length = 211
Score = 40.1 bits (93), Expect = 7e-04
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 10 PFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNW-EKAVVVPA 67
P D ++ + +++ L W G+P T Y +E K +W K
Sbjct: 1 PEDPSDLLQHVKFQSSNFENI-LTWDSG--PEGTPDTVYSIEYKTYGERDWVAKKGCQRI 57
Query: 68 GETSCTVPGLIE--GETYQFQVRAVNAAG 94
SC + E Y +V AV+A G
Sbjct: 58 TRKSCNLTVETGNLTELYYARVTAVSAGG 86
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 37.9 bits (88), Expect = 8e-04
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 353 APKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 411
P + + R +V G + T S P T +WT + P + F T
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--LT 65
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
I + +D+G+Y N D + ++V
Sbjct: 66 IRN----VQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 34.4 bits (79), Expect = 0.012
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)
Query: 219 LGTATASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTST 278
L + VT E +V G + +A + + + L ++
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAK--SKSPAYTLVWTRLHNGKLPSRAMDF 60
Query: 279 TASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
L I+N D+G Y N + +D + V
Sbjct: 61 NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 30.5 bits (69), Expect = 0.31
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 190 QTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVT 229
+ +L I SD G Y T N +A +
Sbjct: 56 RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/335 (10%), Positives = 84/335 (25%), Gaps = 74/335 (22%)
Query: 188 DVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA--HVTGTEFTDNNVHEGKA-- 243
T + + I SD G Y ++ + +A V E +
Sbjct: 177 IQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236
Query: 244 ----YEYRVSAVN-----AAGTEKPKISLDALIGK--------RIKEFVTSTTASLNIKN 286
V+ V + E + ++ L + + + S+ I
Sbjct: 237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITG 296
Query: 287 SVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDG 346
++D+G Y A +D + + T
Sbjct: 297 LRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT----------------- 339
Query: 347 GTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIW---------TVNGDEVS 397
+ +AG + P++ + + + V
Sbjct: 340 -----------------VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVD 382
Query: 398 PDGRIKFETSENQTIYRNKSAKRAT---------DSGSYTIQLVNTVGSDSASCKVYVVD 448
+G +K + ++ T D+G Y N + ++ +++
Sbjct: 383 SEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCL-TNGDTLWRTTVEIKIIE 441
Query: 449 KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPIT 483
+ P +V+ + E+ + P
Sbjct: 442 GEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKY 476
Score = 38.8 bits (89), Expect = 0.004
Identities = 25/214 (11%), Positives = 48/214 (22%), Gaps = 54/214 (25%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+ E + T ++ + +D+G Y D ++ +P
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG------ 450
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
++T + GE + F + +
Sbjct: 451 ---------------------------------NVTAVLGETLKVPCHFPCKFSSYEKYW 477
Query: 391 VNGDEVSPDGRIKFETSENQTIYRNKSAK----------RATDSGSYTIQLVNTVGSDSA 440
+ + ++ D G Y V
Sbjct: 478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCG-VKQGHFYGE 536
Query: 441 SCKVYVVDKPSPPQGPLDVS----DITPESCSLS 470
+ VYV + G DVS D P+ L
Sbjct: 537 TAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLD 570
Score = 38.4 bits (88), Expect = 0.005
Identities = 29/186 (15%), Positives = 53/186 (28%), Gaps = 26/186 (13%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
+ F + T +NI + DSG YK + D+ + V PG YT
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVD 125
Query: 331 TPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 390
+V+++ P + G I +
Sbjct: 126 LGRTVTIN---------CPFKTENAQKRKSLYKQ---------------IGLYPVLVIDS 161
Query: 391 VNGDEVSPDGRIKFETS--ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
+ GRI+ + + R +D+G Y Q + S+ + + V+
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221
Query: 449 KPSPPQ 454
Sbjct: 222 PEPELV 227
Score = 36.5 bits (83), Expect = 0.019
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 1/89 (1%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGID-MADIEVVVVSKPGPPTGPID 326
+ S SL + R D G Y K + A + V V + + +
Sbjct: 497 KAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVS 556
Query: 327 YTTVTPESVSMSWKPPVDDGGTPITGAPK 355
+ P+
Sbjct: 557 LAKADAAPDEKVLDSGFREIENKAIQDPR 585
Score = 28.4 bits (62), Expect = 6.2
Identities = 21/141 (14%), Positives = 33/141 (23%), Gaps = 20/141 (14%)
Query: 363 RDMTVLAGEEFTIT---VPFSGRPKPTPIW--------------TVNGDEVSPDGRIKFE 405
++ + G +IT P S W + GR
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 406 TS-ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITP 464
EN T N + DSG Y L S + V P +
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT--VD 125
Query: 465 ESCSLSWKPPLDDGGSPITNY 485
+++ P +
Sbjct: 126 LGRTVTINCPFKTENAQKRKS 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.002
Identities = 61/410 (14%), Positives = 122/410 (29%), Gaps = 116/410 (28%)
Query: 7 IKNPFDEPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVV---EMKDKTGNW---- 59
IK +P T + D+ + D Q Y V + K
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQ----------VFAKYNVSRLQPYLKLRQALLEL 147
Query: 60 --EKAVVVP----AGETSCTVPGLIEGETYQ---FQVRAVNAAGPGEASKPTAPIVAKPK 110
K V++ +G+T + + + F++ +N + P ++ +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPET-VLEMLQ 203
Query: 111 NLAPRIDRSTLNDVKIKAGQSFSFDV--KEFRELSYTKSPLRALGVRAN--STKGWVKLS 166
L +ID + + + E R L +K L V N + K W
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW---- 259
Query: 167 EPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASA 226
F N C+I + TT+ + V D F S + T H SL +++
Sbjct: 260 NAF-NLS-------CKI-----LLTTRFKQVTD--FLSAATTTHISLD-HHSMT------ 297
Query: 227 HVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKP----KIS--LDALIGKRIKEFV----- 275
T + + ++ + P + ++I + I++ +
Sbjct: 298 ------LT-----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 276 --TSTTASLN--IKNSVRK-DSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTV 330
L I++S+ + Y+ + + + I
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSA-------------HI----- 387
Query: 331 TPESV-SMSW-KPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVP 378
P + S+ W D + + L + +E TI++P
Sbjct: 388 -PTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIP 429
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 36.7 bits (84), Expect = 0.004
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 10 PFDEPGKPTDLEATDWDKDH-VDLQWTPPISD-----GGSPITGYVVEMKDKTGNWEKAV 63
P P P D+ + + W PP+ G+ +TGY V K G V
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK---GQRVAEV 70
Query: 64 VVP-AGETSCTVPGLIEGETYQFQVRAVNAAGPGEASKPT 102
+ P A T+ + L E VR ++A G S
Sbjct: 71 IFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVA 110
Score = 30.5 bits (68), Expect = 0.50
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 436 GSDSASCKVYVVDKPSPPQGPLDVS---DITPESCSLSWKPPLDD-----GGSPITNYVV 487
GS +S + PP P DV+ +TP + +SW+PP+ G+ +T Y V
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 36.0 bits (83), Expect = 0.005
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 363 RDMTVLAGEEFTITVPFSGRPKPTPIW--------TVNGDEVSPDGRIKFETSENQTIYR 414
+++TV+ G +T + W + + D RI+ + +
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI 73
Query: 415 NKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 450
+ S +D G YT + T+ ++ + V+ P
Sbjct: 74 SVSDVSLSDEGQYTCS-LFTMPVKTSKAYLTVLGVP 108
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 35.8 bits (82), Expect = 0.006
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKP--TPIWTVNGDEVSPDGRIKFETSENQT 411
P+IT + + G + + T + T W + + + + Q
Sbjct: 11 PQITV--QPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 412 IYRNKSAK-------RATDSGSYTIQLVNTVGSDSAS 441
+ T G Y + N GS +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 30.8 bits (69), Expect = 0.29
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVV 315
+ T L ++N G Y+ N +G + + +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 36.1 bits (83), Expect = 0.013
Identities = 17/165 (10%), Positives = 40/165 (24%), Gaps = 46/165 (27%)
Query: 277 STTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVS 336
+ + SL + N +D+G Y+ + ++ + ++ + +
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCE 126
Query: 337 MSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV 396
+ + W G+ +
Sbjct: 127 LHL-----------------------------------TCSVEDADDNVSFRWEALGNTL 151
Query: 397 SPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 441
S + T+ + R + YT N V + S S
Sbjct: 152 SSQPNL--------TVSWD---PRISSEQDYTCIAENAVSNLSFS 185
Score = 28.4 bits (63), Expect = 4.0
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 420 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGG 479
+ D+GSY Q+ + +S + ++ + Q +C L ++D
Sbjct: 78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDAD 137
Query: 480 SPIT 483
++
Sbjct: 138 DNVS 141
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 34.8 bits (80), Expect = 0.027
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 13/111 (11%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
PK L + VL + T+T + P+ I W NG+ + + +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKA--- 58
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKV-YVVDKPSPPQGPLDVSD 461
DSG YT Q T SD V + P +
Sbjct: 59 --------NNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGE 101
Score = 30.6 bits (69), Expect = 0.74
Identities = 20/137 (14%), Positives = 32/137 (23%), Gaps = 23/137 (16%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W NG + +D+G Y+ + V
Sbjct: 39 WFHNGN----------LIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWL 88
Query: 234 T----DNNVHEGKAYEYRVSAVNAAGTEKPKISL--DALIGKRIKEFVTSTTASLNIKNS 287
EG+ R + K++ + GK K T +I +
Sbjct: 89 VLQTPHLEFQEGETIMLRCHS--WKDKPLVKVTFFQN---GKSQKFSHLDPT--FSIPQA 141
Query: 288 VRKDSGIYKIEAKNDYG 304
SG Y Y
Sbjct: 142 NHSHSGDYHCTGNIGYT 158
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 35.9 bits (81), Expect = 0.029
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 2 DHSVLIKNPFDEPGKPTDLEATDWDK-DHVDLQWTPPIS----DGGSPITGYVVEMKDKT 56
S +P P +L+ V++ W P + +T + V+++ K+
Sbjct: 201 YTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT-FCVQVQGKS 259
Query: 57 GNWEKAVVVPAGETSCTVPGLIEGETYQFQVRAVNAAGPGE 97
+K V T T +I + VRA +
Sbjct: 260 KREKKDRVF----TDKTSATVICRKNASISVRAQDRYYSSS 296
Score = 29.7 bits (65), Expect = 2.3
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 4/121 (3%)
Query: 373 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 432
+ S T E ++E S A + + V
Sbjct: 134 VKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAV 193
Query: 433 NTVGSDSASCKVYVVD--KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 490
+ + + + ++ D KP PP+ +SW+ P D S +Y +
Sbjct: 194 HKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYP--DTWSTPHSYFSLTF 251
Query: 491 E 491
Sbjct: 252 C 252
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 34.8 bits (79), Expect = 0.039
Identities = 25/182 (13%), Positives = 42/182 (23%), Gaps = 41/182 (22%)
Query: 267 IGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAK-NDYGIDMADIEVVVVSKPGPPTGPI 325
R + + L + + D Y + G A + V +KP
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPK 384
+ T++ + + T +G P
Sbjct: 124 NKGTLSV----------------------------------MEDSAQEIATCNSRNGNPA 149
Query: 385 PTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSA--SC 442
P W NG + + E R S + S T+ L A C
Sbjct: 150 PKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTS---TLYLRLRKDDRDASFHC 206
Query: 443 KV 444
Sbjct: 207 AA 208
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 34.1 bits (78), Expect = 0.044
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 20/145 (13%)
Query: 370 GEEFTITVPFSGRPKPTPIWTVNGD---EVSPDGRIKFETSENQTIYRNKSAK------R 420
T VP S P +W D E+ F + +N+ S
Sbjct: 10 YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 421 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGS 480
++D Y ++ N + V + S P + S+ T +C + G+
Sbjct: 69 SSDEDEYEMESPNITDTMKFFLYVL--EMVSKPMIYWECSNAT-LTCEVL-------EGT 118
Query: 481 PITNYVVEKYESATGVSDLFISKSE 505
+ + + E + +S
Sbjct: 119 DVELKLYQGKEHLRSLRQKTMSYQW 143
Score = 33.0 bits (75), Expect = 0.13
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV-VVVSKP 318
+ ++ + + SL I N D Y++E+ N + V +VSKP
Sbjct: 52 RVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKP 99
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 33.5 bits (76), Expect = 0.045
Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 17 PTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMK------DKTGNWEKAVVVPAGET 70
P+++ + H ++W P + + ++ V E
Sbjct: 21 PSNVTVRC-NTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLEN 79
Query: 71 SCTVPGLIEGETYQFQVRA 89
P + ++RA
Sbjct: 80 RYNFPSSEPRAKHSVKIRA 98
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 33.7 bits (76), Expect = 0.071
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 12/121 (9%)
Query: 368 LAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSY 427
++G +T P W NG E+ + + DSG Y
Sbjct: 12 ISGTSVELTCPLD--SDENLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYY 60
Query: 428 TIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 487
+ + K V + D + + + + +
Sbjct: 61 VCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDD-AKKDGSQTNKAKNLVQVDGS 119
Query: 488 E 488
Sbjct: 120 R 120
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 34.4 bits (78), Expect = 0.072
Identities = 31/266 (11%), Positives = 58/266 (21%), Gaps = 49/266 (18%)
Query: 204 SRSDTGHYSLTLENNLGTATASAHVTGTEF--------TDNNVHEGKAYEYRVSAVNAAG 255
+ + G +TA +T + GK R A
Sbjct: 56 NVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 256 TEKPKISL--DALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVV 313
+ L KR + + + + D
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELD----------- 164
Query: 314 VVSKPGPPTGPIDYTTVTPESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEF 373
P + T P + P P++ S + +
Sbjct: 165 ----LRPQGLELFENTSAPYQLQTFVLPATP---------PQLVSPRVLE-----VDTQG 206
Query: 374 TITVPFSGRPKPTPI---WTVNGDEVSPDGRIKFETSENQTIYRNKSAK-RATDSGSYTI 429
T+ G + + ++P T N + S A D G+ +
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTV-----TYGNDSFSAKASVSVTAEDEGTQRL 261
Query: 430 QLVNTVGSDSASCKVYV-VDKPSPPQ 454
+G+ S V + P
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPN 287
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 32.3 bits (73), Expect = 0.086
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 272 KEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMAD 309
F L IKN R DSG Y + + G + D
Sbjct: 51 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILD 88
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 32.5 bits (74), Expect = 0.11
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSK 317
+ S AS+N+ N D G Y+ + K G+ I +VV+ K
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 34.3 bits (78), Expect = 0.11
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 25/98 (25%)
Query: 4 SVLIKNPFDE----PGKPTDLEATDWDKDHVDLQ-WTPP--------ISDGGSPITGYVV 50
V D+ + A V + W P S I + +
Sbjct: 277 QVQTAGVLDDTYAAAAEALSYGAQ-LTDSGVTFRVWAPTAQQVELVIYSADKKVIASHPM 335
Query: 51 EMKDKTGNWEKAVVVPAGETSCTVPGLIEGETYQFQVR 88
+G W S ++G Y++ +
Sbjct: 336 TRDSASGAW-----------SWQGGSDLKGAFYRYAMT 362
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 33.4 bits (76), Expect = 0.12
Identities = 27/176 (15%), Positives = 44/176 (25%), Gaps = 53/176 (30%)
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
F + S+ I D G Y+ VV+ VT
Sbjct: 58 IFDITNNLSIVILALRPSDEGTYE---------------CVVLKYEKDAFKREHLAEVTL 102
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTV 391
+ P SI D + I G P+P W
Sbjct: 103 SVKADFPTP-------------------SISDFEIPTSNIRRIICSTSGGFPEPHLSWLE 143
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQ---LVNTVGSDSASCKV 444
NG+E++ N + + ++ Y + N + S C +
Sbjct: 144 NGEELNAI---------------NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLI 184
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 33.2 bits (75), Expect = 0.13
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 16 KPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD-KTGNWEKAVVVP--AGETSC 72
P + H+ L WTP S T Y V + +W + + S
Sbjct: 7 SPPSVWFEAEFFHHI-LHWTPI--PQQSESTCYEVALLRYGIESWNS---ISQCSQTLSY 60
Query: 73 TVPGLI----EGETYQFQVRAVNAAGPGEASKPTAPIVAKPKNLAP 114
+ + Y+ +VRAV+ + + + L
Sbjct: 61 DLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV 106
Score = 32.8 bits (74), Expect = 0.18
Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 11/107 (10%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPP--------ISDGGSPITGYVVEMKDKTGNWEKAVV 64
+ +Q P S Y + ++ G +
Sbjct: 103 TLTVGSVNLEIHNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHK 162
Query: 65 VPAGETSCTVPGLIEGETYQFQVRAV--NAAGPGEASKPTAPIVAKP 109
++ E + QV+ + + G SK + +
Sbjct: 163 KVK-HEQFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQ 208
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.1 bits (72), Expect = 0.13
Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 237 NVHEGKAYEYRVSAVNAAGTEKPKIS--------LDALIGKRIK------EFVTSTTASL 282
+V GK +KP I L + G R T L
Sbjct: 23 SVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVEL 82
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV 314
+I V D G Y++E K D + V
Sbjct: 83 HIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 32.1 bits (72), Expect = 0.15
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 363 RDMTVLAGEEFTITVPFSGRP---KPTPIW---TVNGDEVSPDGRIKFETSENQ-----T 411
++V G++ + +G+ KPT W R F+ S N T
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ + D G Y +++ DS + V
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 26.7 bits (58), Expect = 8.6
Identities = 22/141 (15%), Positives = 39/141 (27%), Gaps = 26/141 (18%)
Query: 92 AAGPGEASKPTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYTKSPLRA 151
++G A +PT + KP + V ++ G+ K P
Sbjct: 2 SSGSSGAEEPTGVFLKKPDS------------VSVETGKDAVVVAK-VNGKELPDKP--- 45
Query: 152 LGVRANSTKGWVKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHY 211
T W K L S +G + + L I D G+Y
Sbjct: 46 -------TIKWFKGKWLELG---SKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY 95
Query: 212 SLTLENNLGTATASAHVTGTE 232
L ++ + ++
Sbjct: 96 RLEVKAKDTCDSCGFNIDVEA 116
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 32.6 bits (74), Expect = 0.18
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVT--- 331
+ T +L I N ++D G Y + ++ D I + V P + + T
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPMIYWECSNATLTC 122
Query: 332 ----PESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMT 366
V + G + + T ++
Sbjct: 123 EVLEGTDVELKL----YQGKEHLRSLRQKTMSYQWTNLR 157
Score = 31.8 bits (72), Expect = 0.33
Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 359 DLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTIYRNKS 417
D S+ ++ + G T+T+ + W ++ +++ + +T++ +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQK----ILEYFPNGKKTVFESVF 58
Query: 418 AKRAT----------------DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSD 461
R D G Y ++ + D + V + S P + S+
Sbjct: 59 KDRVDLDKTNGALRIYNVSKEDRGDYYMR-MLHETEDQWKITMEVYEMVSKPMIYWECSN 117
Query: 462 ITPESCSLSWKPP 474
T +C +
Sbjct: 118 AT-LTCEVLEGTD 129
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 32.6 bits (74), Expect = 0.19
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 19/149 (12%)
Query: 174 WSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTATASAHVTGTEF 233
W NG + + T S L+I D+G Y + + V
Sbjct: 39 WFHNGSL--------SEETNSS--LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWL 88
Query: 234 T----DNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVR 289
V EG+ R K D G+ +K + + ++I N+
Sbjct: 89 LLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKD---GEALKYWYENHN--ISITNATV 143
Query: 290 KDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+DSG Y K ++ + V K
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVIKA 172
Score = 29.9 bits (67), Expect = 1.3
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 14/94 (14%)
Query: 354 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQTI 412
PK++ L+ + GE T+T + + + W NG ET+ + I
Sbjct: 5 PKVS--LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-------ETNSSLNI 55
Query: 413 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
+ DSG Y Q S+ +V+
Sbjct: 56 ----VNAKFEDSGEYKCQHQQVNESEPVYLEVFS 85
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 32.1 bits (73), Expect = 0.24
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
PK L + +VL + T+ + P+ W N +S
Sbjct: 5 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS--------- 55
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
Y +A DSG Y Q + SD +V++ Q P V
Sbjct: 56 -YFIDAATV-NDSGEYRCQTNLSTLSDPVQLEVHI--GWLLLQAPRWV 99
Score = 27.1 bits (60), Expect = 9.3
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEV----VVVSKPGPP 321
++S +S I + DSG Y+ + D +EV +++ P
Sbjct: 47 SLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWV 99
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 32.0 bits (72), Expect = 0.31
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 19/113 (16%)
Query: 271 IKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTT- 329
+++ +T+ A+L I N DSG Y ++ + A +E+ V + +
Sbjct: 74 LRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKD 133
Query: 330 --VTPESVSMSWKPP-----VDDGGTPITGAPK-----------ITSDLSIRD 364
+ E S W P ++ G I + + + +R
Sbjct: 134 GGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG 186
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 30.7 bits (69), Expect = 0.38
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKNDYG-IDMADIEVVV---VSKP 318
+ + +L I ++D+ Y + G I++ V V KP
Sbjct: 68 LDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel,
beta-sheet, two alpha helices, structural genomics, PSI;
HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP:
d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Length = 119
Score = 30.2 bits (69), Expect = 0.60
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 21/74 (28%)
Query: 265 ALIGKRIKEFVTSTTASL------NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+ R E V L I + V D ++ +E V V KP
Sbjct: 55 VRLASRAAEIVAGPPRKLIETVGAEIADHVMDDQRVHAVE--------------VAVHKP 100
Query: 319 GPP-TGPIDYTTVT 331
P D V
Sbjct: 101 QAPIPQTFDDVAVV 114
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 30.3 bits (68), Expect = 0.61
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVVVSKPGP 320
+K ++ SL I+NSV DSG+Y ++E + + V + P
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELVP 115
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 30.6 bits (69), Expect = 0.87
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 14/108 (12%)
Query: 353 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI-WTVNGDEVSPDGRIKFETSENQT 411
PK L + VL + T+ + P+ W N +S
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS--------- 55
Query: 412 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDV 459
Y +A DSG Y Q + SD +V++ Q P V
Sbjct: 56 -YFIDAATV-DDSGEYRCQTQLSTLSDPVQLEVHI--GWLLLQAPRWV 99
Score = 27.5 bits (61), Expect = 8.0
Identities = 20/184 (10%), Positives = 43/184 (23%), Gaps = 52/184 (28%)
Query: 273 EFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTP 332
++S +S I + DSG Y+ + + D +EV
Sbjct: 47 SLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQLEV-------------------- 86
Query: 333 ESVSMSWKPPVDDGGTPITGAPKITSDLSIRDMTVLAGEEFTIT-VPFSGRPKPTPIWTV 391
+ L + + + +
Sbjct: 87 ------------------HIGWLL---LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ 125
Query: 392 NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGS-DSASCKVYVVDKP 450
NG + + I DSGSY + + + S + ++ +
Sbjct: 126 NGKGRKYFH-----HNSDFYI----PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
Query: 451 SPPQ 454
+
Sbjct: 177 AVST 180
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like
domains, cell WALL, peptidoglycan-anchor, structural
protein; 1.60A {Corynebacterium diphtheriae} PDB:
3htl_X*
Length = 436
Score = 31.3 bits (69), Expect = 0.88
Identities = 24/250 (9%), Positives = 59/250 (23%), Gaps = 6/250 (2%)
Query: 163 VKLSEPFLNHGWSINGQVCQIGGRADVQTTKSETVLDIPFCSRSDTGHYSLTLENNLGTA 222
V + + +A + K+ D S + + +
Sbjct: 119 VAAPQTNPTGDGWLQDVHVYPKHQALSEPVKTAVDPDATQPGFSVGENVKYRVATKIPEI 178
Query: 223 TASAHVTGTEFTDNNVHEGKAYEYRVSAVNAAGTEKPKISLDALIGKRIKEFVTSTTASL 282
++ G D E + V G + + V S +
Sbjct: 179 ASNTKFEGFTVADKLPAELGKPDTNKITVTLGGKPINSTDVSVQTYQVGDRTVLSVQLAG 238
Query: 283 NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKPGPPTGPIDYTTVTPESVSMSWKPP 342
S+ + ++ + + + + ++ ES + +
Sbjct: 239 ATLQSLDQHKD-QELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEESGDAALRGM 297
Query: 343 VDDGGTPITGAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 402
+ G I F + R + + +S DG+
Sbjct: 298 PSSRVSSKFGQITIEKSFDGNTPGADRTATFQLH-----RCEADGSLVKSDPPISLDGKQ 352
Query: 403 KFETSENQTI 412
+F T ++
Sbjct: 353 EFVTGQDGKA 362
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST
genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP:
d.96.1.3
Length = 133
Score = 29.9 bits (68), Expect = 0.96
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 21/74 (28%)
Query: 265 ALIGKRIKEFVTSTTASL------NIKNSVRKDSGIYKIEAKNDYGIDMADIEVVVVSKP 318
+ R E V L I + V D ++ +E V V KP
Sbjct: 55 VRLASRAAEIVAGPPRKLIETVGAEIADHVMDDQRVHAVE--------------VAVHKP 100
Query: 319 GPP-TGPIDYTTVT 331
P D V
Sbjct: 101 QAPIPQTFDDVAVV 114
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.0 bits (65), Expect = 1.1
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 277 STTASLNIKNSVRKDSGIYKIE 298
+L+I N ++D G Y +
Sbjct: 70 ENNGALHISNVRKEDKGTYYMR 91
Score = 28.7 bits (64), Expect = 1.9
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 22/111 (19%)
Query: 355 KITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI------------WTVNGDEVSPD--- 399
+I + SI D+ G T+ + I + N + +
Sbjct: 3 RIRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEF 62
Query: 400 -GRIKF-ETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 448
GR+ E + I S R D G+Y ++ V + + V D
Sbjct: 63 KGRVYLEENNGALHI----SNVRKEDKGTYYMR-VLRETENELKITLEVFD 108
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 30.4 bits (68), Expect = 1.4
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 398 PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPL 457
DGR ++ YRN TD G ++L T SC++ +G L
Sbjct: 41 LDGRQTYD-------YRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGIL 93
Query: 458 DVS-DITPESCSLSWKPPLDDGGSPITNYVVEKYESATGV--SDLFISKSE 505
+ +++ + D + + ++ + L + E
Sbjct: 94 FFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGE 144
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.8 bits (64), Expect = 1.5
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 270 RIKEFVTSTTASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVVVSKP 318
++K ++ SL I+N+V D G Y +E + +EV P
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.8 bits (64), Expect = 1.7
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKN--DYGIDMADIEVVVVSKP 318
+ S+ I N D+G + + KN D + + + V K
Sbjct: 76 PSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 29.3 bits (65), Expect = 2.2
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 32 LQWTPPISDGGSPITGYVVEMKDKTGNWEKAVVVPAGETSCTVPGLIEG---ETYQFQVR 88
L+W P + Y V++ K+G+W+ +T C + I +TY +V
Sbjct: 23 LEWEPKPVN-----QVYTVQISTKSGDWKSKCFYTT-DTECDLTDEIVKDVKQTYLARVF 76
Query: 89 AVNAAGPGEASKPTAPIVAKPKNLAPRID 117
+ A P+ P ++
Sbjct: 77 SYPAGNVESTGSAGEPLYENSPEFTPYLE 105
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 2.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 276 TSTTASLNIKNSVRKDSGIYKIEAKNDYG 304
+L+IK++ +DSG Y +E N G
Sbjct: 71 DYGDFALSIKSAKLQDSGHYLLEITNTGG 99
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 28.2 bits (62), Expect = 2.4
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 374 TITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVN 433
T+ + P +W N + D K S+ + K SG Y
Sbjct: 23 TVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL-KEFSELEQSGYYVCYPRG 81
Query: 434 TVGSDS 439
+ D+
Sbjct: 82 SKPEDA 87
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 28.1 bits (63), Expect = 2.5
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 268 GKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKND 302
G + +L I D Y+ +
Sbjct: 60 GSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 94
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/105 (9%), Positives = 22/105 (20%), Gaps = 7/105 (6%)
Query: 326 DYTTVTPESVSMSWKPPVDDGGTPITGAP--KITSDLSIRDMTVLAG-----EEFTITVP 378
T + + V +W P P + S + +M G E
Sbjct: 46 SRRTRSSKDVDTTWHIDAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRH 105
Query: 379 FSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 423
+ + + + ++R
Sbjct: 106 ADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQ 150
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 28.9 bits (64), Expect = 3.1
Identities = 15/76 (19%), Positives = 21/76 (27%), Gaps = 6/76 (7%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIEAKND-YGIDMADIEVVVVSKPGPPTGPIDYTTVTPE 333
ASL + +D G Y G DI + V++KP
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEP 132
Query: 334 SV-----SMSWKPPVD 344
S +PP
Sbjct: 133 VPMARCVSTGGRPPAQ 148
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase,
two-component regulatory system; HET: PG4 PGE; 1.47A
{Thermotoga maritima} PDB: 3a0v_A*
Length = 96
Score = 27.5 bits (61), Expect = 3.7
Identities = 6/42 (14%), Positives = 20/42 (47%)
Query: 13 EPGKPTDLEATDWDKDHVDLQWTPPISDGGSPITGYVVEMKD 54
E +P L + + + +++++P + + G ++ + D
Sbjct: 55 ENKEPVFLNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDD 96
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 27.6 bits (61), Expect = 3.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 280 ASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVVVSKPGP 320
SL I N+ R DSG+Y +IE + ++ + + P
Sbjct: 73 VSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALVP 115
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 27.6 bits (61), Expect = 4.3
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 280 ASLNIKNSVRKDSGIY--KIEAKNDYGIDMADIEVVV 314
SL IKN D G Y +I+ ++++ +
Sbjct: 72 VSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 27.6 bits (61), Expect = 4.7
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 267 IGKRIKEFVTSTT-ASLNIKNSVRKDSGIYK-IEAKNDYGIDMADIEVVVVSKPGPPTGP 324
I K+ V L +++ D+G Y I G I + V+ G
Sbjct: 57 ISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 28.2 bits (62), Expect = 5.1
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 390 TVNGDEVS---PDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 446
++ +VS KF+ SE + +GS + L G + V
Sbjct: 47 SLKNQKVSVQKSTSNPKFQLSETLPLTLQIPQVSLQFAGSGNLTLTLDRGILYQEVNLVV 106
Query: 447 VDKPSPPQGPL--DVSDITPESCSLSWKPP 474
+ P L +V T L K
Sbjct: 107 MKVTQPDSNTLTCEVMGPTSPKMRLILKQE 136
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 28.6 bits (64), Expect = 5.6
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 21/83 (25%)
Query: 14 PGKPTDLEATDWDKDHVDLQ-WTPP-------ISDGGSPITGYVVEMKDKTGN-WEKAVV 64
DL + KD + W P + + +EM+ W
Sbjct: 312 DYSGNDLGNV-YSKDATSFRVWAPTASNVQLLLYNSEKGSITKQLEMQKSDNGTW----- 365
Query: 65 VPAGETSCTVPGLIEGETYQFQV 87
V G +E Y +QV
Sbjct: 366 ------KLQVSGNLENWYYLYQV 382
>1xo8_A AT1G01470; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG, unknown
function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Length = 151
Score = 27.6 bits (61), Expect = 5.7
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 252 NAAGTEKPKISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKNDYGIDMADIE 311
KP+ S+ + K + A +++ N I +I + A E
Sbjct: 15 KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPICEI----SFTFHSAGRE 70
Query: 312 VVVVSKPGPPTGPIDYTTVTPESVSMSWK 340
+ P P + T V + +
Sbjct: 71 IGKGKIPDPGSLKAKDMTALDIPVVVPYS 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 257 EKPKIS-LDALIGKRIKEFVTSTTASLNIKNSV 288
EK + L A +K + + +L IK ++
Sbjct: 18 EKQALKKLQA----SLKLYADDSAPALAIKATM 46
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 6.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 275 VTSTTASLNIKNSVRKDSGIYKIE 298
+L I + +D+G YK +
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKAD 90
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 27.2 bits (60), Expect = 7.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 280 ASLNIKNSVRKDSGIYKIEAKNDYGIDMADIEVVV---VSKPGPPTG 323
+L I+N D G Y ++ + A +E+ V P
Sbjct: 85 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRS 131
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 95
Score = 26.5 bits (59), Expect = 8.3
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 260 KISLDALIGKRIKEFVTSTTASLNIKNSVRKDSGIYKIEAKN-----------------D 302
+++L L + K + +K + + G +
Sbjct: 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61
Query: 303 YGIDMADIEVVVVSKPGPPTGP 324
Y ID + VV+V+KP + P
Sbjct: 62 YKIDEKNFVVVMVTKPKAVSTP 83
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 27.8 bits (62), Expect = 9.3
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 101 PTAPIVAKPKNLAPRIDRSTLNDVKIKAGQSFSFDVKEFRELSYT------KSPLRALGV 154
T P+ KP P++ + L + KIKA ++++ ++S +P+ A+
Sbjct: 8 ETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIK- 66
Query: 155 RANSTKGWVKLSEPF--LNHGWSINGQV-CQIGGRADVQTTKSETVLDIPFCSRSDTGHY 211
+ +STK W KL + F LN +V I A ++ KS TVLD+ ++
Sbjct: 67 KKDSTK-WRKLVD-FRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDV------GDAYF 118
Query: 212 SLTLENNLGTATASAHVTGTEFTDNNVHEGKAYEYRV 248
S+ L+ + TA T + NN G Y+Y V
Sbjct: 119 SVPLDEDFRKYTAF-----TIPSINNETPGIRYQYNV 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.130 0.381
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,890,797
Number of extensions: 488920
Number of successful extensions: 2877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2122
Number of HSP's successfully gapped: 1236
Length of query: 516
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 418
Effective length of database: 3,965,535
Effective search space: 1657593630
Effective search space used: 1657593630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.0 bits)