BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7040
(716 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 101/202 (50%), Gaps = 7/202 (3%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+D P PP LKV V VTL W P DGG I+ Y+V+K E+T + T
Sbjct: 2 AMDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKR-ESTRKAYSTVATNC 59
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDT 338
T +V+ L Y FRV A N+ G P T S++A +P PG + D
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE---RPLPPGKITLMDVTR 116
Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
+ V L+W PE +GGS I+GYI+E + K S W CA + + + LI+G +Y FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFR 174
Query: 399 VLAVNKGGPGEPSDPTAPHIAR 420
V A N+ G +P + P IA+
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAK 196
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 71/190 (37%), Gaps = 55/190 (28%)
Query: 15 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHK------ 68
P L+V + K TL W+ P DGG ++ Y+VEK +N HK
Sbjct: 8 PPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVD 67
Query: 69 ---DGC----------------------------------------------TLKWNKPK 79
+GC +L W KP+
Sbjct: 68 QLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPE 127
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139
DGG + GY+VE + W + E +TGL G EY FRV A N++G S+P
Sbjct: 128 HDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPR 187
Query: 140 ETFSSIIARD 149
+ +IA+D
Sbjct: 188 QLSVPVIAKD 197
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENING----KDSVEVEVIVLDKPSPPGGPLKVSNVHAE 238
+ T V Q + ++ V AEN G ++ E V ++P PPG + + +V
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAE-SVKASERPLPPG-KITLMDVTRN 117
Query: 239 GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV 298
V+L W+ P+ DGG I Y+V+ + + +W + VT + GLI +Y FRV
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVK--VTEATITGLIQGEEYSFRV 175
Query: 299 RAVNKQGKSEPLTTTASIEAKN 320
A N++G S+P + + AK+
Sbjct: 176 SAQNEKGISDPRQLSVPVIAKD 197
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 54 GLDPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG-KTRE 109
+D GP L+V + K TL W+ P DGG ++ Y+VEK + + V +
Sbjct: 2 AMDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
V L G Y FRV A N+ G P ET S+ A +
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
+VT +L W+PP DGG+ I+ Y+VEK E+ T T+ + T
Sbjct: 16 EVTKTSVTLTWDPPLLDGGSKIKNYIVEKRES-----------TRKAYSTVATNCHKTSW 64
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI-QWLLTLTDVT------ 625
+ LQ + + V A N G + + + A E P+ +TL DVT
Sbjct: 65 KVDQLQEGCSYYFRVLAENEYG---IGLPAETAESVKASERPLPPGKITLMDVTRNSVSL 121
Query: 626 -WEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
WE + + S ++ +E Q +DK T V T+ TI L + + + V+A
Sbjct: 122 SWEKPEH--DGGSRILGYIVEMQTKGSDKWATCATVK-VTEATITGLIQGEEYSFRVSAQ 178
Query: 685 NSQGKD---QVFIEVVVTD 700
N +G Q+ + V+ D
Sbjct: 179 NEKGISDPRQLSVPVIAKD 197
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 193 QRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGG 252
+R DAGFY V A+N G D VE+ V D P PP G +KVS+V + V L W P DGG
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVSRDSVNLTWTEPASDGG 227
Query: 253 QPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
I Y+V+K RW G+ T V L Y+FRV A NK G S+P
Sbjct: 228 SKITNYIVEKCATTAERWLRVGQARE--TRYTVINLFGKTSYQFRVIAENKFGLSKP 282
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P ++ D D V L WT P +GGS I YI+EK + W + Q +
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR--ETRY 256
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
V++L Y+FRV+A NK G +PS+P+ P I + K
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDK 295
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
DP ++VS++ +D L W +P DGG + Y+VEK W+ VG+ RE V
Sbjct: 200 DPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVI 259
Query: 116 GLTPGHEYKFRVKALNKEGESEPLE 140
L Y+FRV A NK G S+P E
Sbjct: 260 NLFGKTSYQFRVIAENKFGLSKPSE 284
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 77 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 514
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 515 TVL-----------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN 557
V +L W P DGG+ I Y+VEK T +W+R
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE----RWLRVG 249
Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
R T+ T+ L + Q+ V A N G KPS P P
Sbjct: 250 QARE--------TRYTVINLFGKTSYQFRVIAENKFG----------LSKPSEPSEP 288
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 30/232 (12%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 487
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-- 545
D+ +Y + N G+ GTA + V + P +G + E +
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 546 -TGKV--LIKWIRTNDKRVTIDNVDYFTKITIRPL---------QRSDTAQYTVTATNSQ 593
+GK +I W + D IDN ++ I R +R D Y V A N
Sbjct: 128 FSGKPDPVITWQKGQD---LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 594 GKDQVFIEVVVTDKPSAPEG-----------PIQWLLTLTDVTWEISNYLQE 634
G DQ +E+ V D P P G + W +D +I+NY+ E
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 65/185 (35%), Gaps = 38/185 (20%)
Query: 548 KVLIKWIRTNDKRVTIDNVDY--------FTKITIRPLQRSDTAQYTVTATNSQGK--DQ 597
K ++KW R K + D + Y + ++ I + D Y V ATN G
Sbjct: 33 KPIVKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91
Query: 598 VFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL------ESQYLMN 651
+EV V K P+ T E + L ++ I + +
Sbjct: 92 ASLEVEVPAKIHLPK------------TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ 139
Query: 652 DKRVTIDNVDYFTKITIRPL---------QRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ IDN ++ I R +R D Y V A N G DQ +E+ V D P
Sbjct: 140 KGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199
Query: 703 SAPEG 707
P G
Sbjct: 200 DPPRG 204
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
+P P P I++ + V L+W PP +GGS + Y IEK+E W CA++
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR--YTY 66
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ L G QYEFR++A NK G +P +PTAP
Sbjct: 67 TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAP 99
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
+P PP P+ + N+ E V L WK P DGG + Y ++K + G W+P ++ T
Sbjct: 9 EPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSR--YT 65
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
+EGL +Y+FR+ A NK G+S+P TA +
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV 100
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
P P+ + NI + L W P DGG + Y +EK + G W P K+R + G
Sbjct: 13 PRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIEG 71
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSII 146
L G +Y+FR+ A NK G+S+P E + ++
Sbjct: 72 LRAGKQYEFRIIAENKHGQSKPCEPTAPVL 101
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
L W PP DGG+ + Y +EK E G W R +T TI L+
Sbjct: 28 LSWKPPALDGGSLVTNYTIEKREAMGG----SWSPCAKSR--------YTYTTIEGLRAG 75
Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI 615
++ + A N G+ KP P P+
Sbjct: 76 KQYEFRIIAENKHGQ----------SKPCEPTAPV 100
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 18/222 (8%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
D G Y TA N G E + + D PS P G +K+ + + + PD GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE----PLT 311
Y VD + A+ W + G T + + L PN Y+ RV AVN +G+ + +
Sbjct: 228 HHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF 286
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIE--KKEKYSP 369
T + +P + G+P + K F + + +GG+PI+ YI++ K+K
Sbjct: 287 QTLPVREPSPPSIHGQPSSG--KSFKLSITK------QDDGGAPILEYIVKYRSKDKEDQ 338
Query: 370 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
EK Q D + L G YE ++ A N+ G EP+
Sbjct: 339 WLEKKVQGNKDHIILEHLQWTMG--YEVQITAANRLGYSEPT 378
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 57 PEGPLEVSNIHKDGCTLK--WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
P P V I T K +NKP GG P+ Y V+ + + +W V M V
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
Query: 115 -TGLTPGHEYKFRVKALNKEGESE--PLETFSSIIARDP 150
L P Y+ RV A+N +G+ + +E F ++ R+P
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 62/294 (21%)
Query: 452 GEPIPTKEW--LCNDITIISKD-----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504
GEPIP W + T D R ++ S+ L + D K DSG Y +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 505 WGTDKGTAKVTV----------------------LGCSLKWNPPEDDGGAPIEYYMVEKM 542
G + + + + + C +K NPP A I + + +
Sbjct: 86 IGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP-----ASIHWRRDKLV 140
Query: 543 ETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIE 601
+K T K + + I P +D +Y TATN G + Q +I
Sbjct: 141 LPAKNTTNLKTYSTGRKMI----------LEIAPTSDNDFGRYNCTATNHIGTRFQEYI- 189
Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVT----- 656
+ + D PS+P G ++ L+ T ++S + H + PI Y ++ K V
Sbjct: 190 LALADVPSSPYGVK--IIELSQTTAKVSFNKPDSHGGV-PI---HHYQVDVKEVASEIWK 243
Query: 657 -IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVT---DKPSAP 705
+ + T + + L+ + T + V A N +G+ D IE+ T +PS P
Sbjct: 244 IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP 297
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 29/197 (14%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
R ++ D+ + G + ++G P+P +W +I ++K+ +D ++ L V
Sbjct: 11 RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
++ D G+YT N G + ++K+ +L + +++P G P++ EK G
Sbjct: 71 EQEDEGVYTCIATNEVGEVETSSKL-LLQATPQFHP-----GYPLK----EKYYGAVGST 120
Query: 550 L-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTAT 590
L + W N + +TI+N +++T + ++ +QR A +Y V +
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 591 NSQGKDQVFIEVVVTDK 607
N G ++V + DK
Sbjct: 181 NVFGTVDAILDVEIQDK 197
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVVTDK 701
L N + +TI+N +++T + ++ +QR A +Y V +N G ++V + DK
Sbjct: 144 LQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
++PG P +I+D + V L WTPP+ +G + I GY I+K +K S W + T
Sbjct: 15 IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT--APHIARAKKV 424
+ +L+ GN+Y FRV + N G E + T + IAR K+
Sbjct: 75 -SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAG 274
+++ ++D+P PP +K+ +V E V L W P DDG I Y + K D+ + W
Sbjct: 10 IDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVI 68
Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
E + E +I N +Y FRV + N G SE T T
Sbjct: 69 EHYHRTSATITELVIGN-EYYFRVFSENMCGLSEDATMT 106
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 55 LDPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV-GKTREP 110
+D GP +++ ++ + L W PKDDG + GY ++K D ++ W V
Sbjct: 15 IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESE--PLETFSSIIARD 149
+T L G+EY FRV + N G SE + S++IARD
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARD 115
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKME 543
+L W PP+DDG A I Y ++K +
Sbjct: 35 ALTWTPPKDDGNAAITGYTIQKAD 58
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEM 112
+DP G NI + TLKW KP+ GG + Y+VEK D G W+ + E E
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 113 DVTGLTPGHEYKFRVKALNKEGE-SEPLETFSSIIARD 149
V+GLT Y+FRV A N G S P E +I RD
Sbjct: 71 TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
PPG P+ + N+ VTL W P+ GG I Y+V+K D GRW A +
Sbjct: 13 PPGKPVPL-NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEP 309
V GL + Y+FRV A N G P
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISP 96
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
+P + PGKP I V L W PE GG I YI+EK++ + W K +
Sbjct: 9 SPIDPPGKPVPLNITRHT---VTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGG----PGEPSD 412
+ V L E YEFRV+A N G P EPSD
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSD 102
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 514 VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKIT 573
+T +LKW PE GG I Y+VEK + G +W++ N + ++N + T
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG----RWLKANFSNI-LEN-----EFT 71
Query: 574 IRPLQRSDTAQYTVTATNSQG 594
+ L ++ V A N+ G
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAG 92
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 491
SDI + G GEP P W C I S++ RF I N D T L + D ++
Sbjct: 13 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D G+YTL++ N +G+D T + +
Sbjct: 73 QDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
R I+N D T + I +Q+ D YT++ N G D + + +
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
R I+N D T + I +Q+ D YT++ N G D + + +
Sbjct: 53 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 491
SDI + G GEP P W C I S++ RF I N D T L + D ++
Sbjct: 15 SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 74
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D G+YTL++ N +G+D T + +
Sbjct: 75 QDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
R I+N D T + I +Q+ D YT++ N G D + + +
Sbjct: 55 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
R I+N D T + I +Q+ D YT++ N G D + + +
Sbjct: 55 RFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
D G Y TA N G E + + D PS P G +K+ + + + PD GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
Y VD + A+ W + G T + + L PN Y+ RV AVN +G+ +
Sbjct: 228 HHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P +I + ++++ P+ +GG PI Y ++ KE S IW K ++ G
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW-KIVRSHGVQTMV 254
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
+ +L YE RV AVN G G+ S
Sbjct: 255 VLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 57 PEGPLEVSNIHKDGCTLK--WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
P P V I T K +NKP GG P+ Y V+ + + +W V M V
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
Query: 115 -TGLTPGHEYKFRVKALNKEGESE--PLETFSSI 145
L P Y+ RV A+N +G+ + +E F ++
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTL 289
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 108/285 (37%), Gaps = 59/285 (20%)
Query: 452 GEPIPTKEW--LCNDITIISKD-----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504
GEPIP W + T D R ++ S+ L + D K DSG Y +
Sbjct: 26 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 85
Query: 505 WGTDKGTAKVTV----------------------LGCSLKWNPPEDDGGAPIEYYMVEKM 542
G + + + + + C +K NPP A I + + +
Sbjct: 86 IGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPP-----ASIHWRRDKLV 140
Query: 543 ETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIE 601
+K T K + + I P +D +Y TATN G + Q +I
Sbjct: 141 LPAKNTTNLKTYSTGRKMI----------LEIAPTSDNDFGRYNCTATNHIGTRFQEYI- 189
Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVT----- 656
+ + D PS+P G ++ L+ T ++S + H + PI Y ++ K V
Sbjct: 190 LALADVPSSPYGV--KIIELSQTTAKVSFNKPDSHGGV-PI---HHYQVDVKEVASEIWK 243
Query: 657 -IDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVT 699
+ + T + + L+ + T + V A N +G+ D IE+ T
Sbjct: 244 IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
D P PP P +V++V VTL W+ P G P Y+++ ++
Sbjct: 14 DLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
T V GL PN Y F VRA+N QG S+P
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 62 EVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGKTREPEM-DVTGLTP 119
+V+++ K+ TL W +P G P Y++E + + W V + + V GL P
Sbjct: 23 QVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRP 81
Query: 120 GHEYKFRVKALNKEGESEP 138
Y F V+A+N +G S+P
Sbjct: 82 NTIYLFMVRAINPQGLSDP 100
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEK-KEKYSPIWEKCAQTEGDTPK 383
PG P P++ D + V L+W P G P YIIE + S W+ A T
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTL 73
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
V L Y F V A+N G +PS
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPS 101
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
L D V + S +F + GEP PT W + I ++K+ D L++ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
DSG+YT VKNS G+ + K+T+
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTI 96
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 219 VLDKPSPPGGPLK-VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
V P P P+ +S V + L W P D G P+ +Y+++ M E WT +
Sbjct: 14 VRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILE-MSENNAPWTVLLASV 71
Query: 278 GP-VTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
P T + V+GL+P Y+FR+ AVN GK +
Sbjct: 72 DPKATSVTVKGLVPARSYQFRLCAVNDVGKGQ 103
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
+ L WT P +G SP++ YI+E E +P A + V L+ Y+FR+
Sbjct: 36 INLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC 94
Query: 401 AVNKGGPGEPSDPT 414
AVN G G+ S T
Sbjct: 95 AVNDVGKGQFSKDT 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 57 PEGPLE-VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE---M 112
PE P+ +S + + L W KP D G PL Y++E + W + + +P+ +
Sbjct: 21 PEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSE-NNAPWTVLLASVDPKATSV 78
Query: 113 DVTGLTPGHEYKFRVKALNKEGESE 137
V GL P Y+FR+ A+N G+ +
Sbjct: 79 TVKGLVPARSYQFRLCAVNDVGKGQ 103
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD--EATGRWTPAGET 276
V D P+PP L++++ + V L W P DD PI K++++ D G W E
Sbjct: 13 VYDVPNPPFD-LELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP------LTTTASIEAKNPFNQP 325
G T ++ L P Y FRV AVN GKS P T AS KNP + P
Sbjct: 71 SGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGP 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK-YSP-IWEKCAQTEG 379
++ P P E+ D V+L+WTP + N SPI +IIE ++ + P +W + G
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSWTPGDDNN-SPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
T L+L Y FRV+AVN G PS+ + ++ +A +
Sbjct: 73 -TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE 115
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP--ETGVWIPVGKTREPEMDVTG-- 116
LE+++ L W P DD P+ +++E D + G+W + +V+G
Sbjct: 23 LELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHKPGLW-------HHQTEVSGTQ 74
Query: 117 ------LTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
L+P Y FRV A+N G+S P E + +
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
S++ + EF+ V G+P+PT W+ N +I D F+IV + L++ + D
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSD 376
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
G Y +N G + +A++ V
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIV 399
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 418 IARAKKV---SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIISKDR 472
I+R KV P Q I G VIG+P+PT W N D+ I D
Sbjct: 110 ISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS 169
Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVL 517
+V S L++ + GDSG+Y + +N T G A+V +L
Sbjct: 170 RVVVL--PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPE-- 111
PE P +S + + W P+ +GG P++ + VE K + G WI P
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 112 -MDVTGLTPGHEYKFRVKALNKEGESEP 138
+++TGL G YKFRV+ALN GESEP
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEP 104
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 224 SPPGGPLK--VSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEATGRWTPAGETEGPV 280
SPP P + +S V + W +P +GG PI+ + V+ K + G W A P
Sbjct: 16 SPPEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS 74
Query: 281 -TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+E+ GL YKFRVRA+N G+SEP
Sbjct: 75 RLSVEITGLEKGISYKFRVRALNMLGESEP 104
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
+ P P P I V + W P NGG PI + +E K K + + T
Sbjct: 15 LSPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYK-KLKKVGDWILATSAIP 72
Query: 382 PKG---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 418
P ++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 73 PSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYV 112
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF--DSKRGD 493
IK++AG +++ IG P PT W D + D KS+ +F +KR D
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRAD 69
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
SG Y L VKN G D+ +V V
Sbjct: 70 SGNYKLKVKNELGEDEAIFEVIV 92
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
L V +V VT+ W+ PD G ++ YV++ E T W A + T + GL
Sbjct: 14 LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLP 73
Query: 290 PNHKYKFRVRAVNKQGKSEP 309
+ K RV+AVN G SEP
Sbjct: 74 TDAKIFVRVKAVNAAGASEP 93
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLT 118
L V ++ T++W P G L+GY++E T WI K + + +TGL
Sbjct: 14 LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLP 73
Query: 119 PGHEYKFRVKALNKEGESEP 138
+ RVKA+N G SEP
Sbjct: 74 TDAKIFVRVKAVNAAGASEP 93
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
V + W PP+ G + + GY++E + + W + D K + L + RV
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 401 AVNKGGPGEPSDPTAPHIAR 420
AVN G EP + P + +
Sbjct: 84 AVNAAGASEPKYYSQPILVK 103
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 494
D KVRAG + E V G T W+ I + K+ N + +KL + +++
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 75
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G YTL V+N G+ + +TV+
Sbjct: 76 GCYTLLVENKLGSRQAQVNLTVV 98
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
KV++ + +KL + A++ G YT+ EN G +V + V+DKP PP G
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 544 TDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV 598
T T + W++ + + ++N + +K+TI ++ YT+ N G Q
Sbjct: 32 TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA 91
Query: 599 FIEVVVTDKPSAPEG 613
+ + V DKP P G
Sbjct: 92 QVNLTVVDKPDPPAG 106
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
+ + + ++N + +K+TI ++ YT+ N G Q + + V DKP P G
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK 483
+P + L D VR G + I V GEP P WL N + + RF + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
L++ ++RGD+G YT N +G + A++ V G
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 188 GVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVP 247
G+ +A + + Y + + + + + V V L+ SPP +V++ +T+ W+
Sbjct: 61 GLMVATKYEVSVYAL-KDTLTSRPAQGV-VTTLENVSPPRR-ARVTDATETTITISWRTK 117
Query: 248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGP-VTGLEVEGLIPNHKYKFRVRAVNKQGK 306
+ I + VD + A G+ TP T P V + GL P YK + +N +
Sbjct: 118 TET----ITGFQVDAV-PANGQ-TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 171
Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
S P+ AS P N TP + + ++W PP I GYII+ ++
Sbjct: 172 SSPVVIDASTAIDAPSNLRFLATTP-------NSLLVSWQPPRAR----ITGYIIKYEKP 220
Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410
SP E + + + L G +Y V+A+ EP
Sbjct: 221 GSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 264
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 48 LVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVG 105
+++ +D L + + W P+ + GY+++ P + +P
Sbjct: 176 VIDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRP 231
Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139
+ E +TGL PG EY V AL +SEPL
Sbjct: 232 RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 265
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 41 GEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV 100
P +G +V + P V++ + T+ W E + G+ V+ P G
Sbjct: 81 SRPAQG-VVTTLENVSPPRRARVTDATETTITISWR----TKTETITGFQVDAV-PANG- 133
Query: 101 WIPVGKTREPEM---DVTGLTPGHEYKFRVKALNKEGESEPL 139
P+ +T +P++ +TGL PG +YK + LN S P+
Sbjct: 134 QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 175
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 21/224 (9%)
Query: 188 GVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVP 247
G+ +A + + Y + + + + + V V L+ SPP +V++ +T+ W+
Sbjct: 80 GLMVATKYEVSVYAL-KDTLTSRPAQGV-VTTLENVSPPRR-ARVTDATETTITISWRTK 136
Query: 248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGP-VTGLEVEGLIPNHKYKFRVRAVNKQGK 306
+ I + VD + A G+ TP T P V + GL P YK + +N +
Sbjct: 137 TET----ITGFQVDAV-PANGQ-TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 190
Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
S P+ AS P N TP + + ++W PP I GYII+ ++
Sbjct: 191 SSPVVIDASTAIDAPSNLRFLATTP-------NSLLVSWQPPRAR----ITGYIIKYEKP 239
Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410
SP E + + + L G +Y V+A+ EP
Sbjct: 240 GSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 283
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 48 LVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVG 105
+++ +D L + + W P+ + GY+++ P + +P
Sbjct: 195 VIDASTAIDAPSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRP 250
Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139
+ E +TGL PG EY V AL +SEPL
Sbjct: 251 RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 41 GEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV 100
P +G +V + P V++ + T+ W E + G+ V+ P G
Sbjct: 100 SRPAQG-VVTTLENVSPPRRARVTDATETTITISWR----TKTETITGFQVDAV-PANG- 152
Query: 101 WIPVGKTREPEM---DVTGLTPGHEYKFRVKALNKEGESEPL 139
P+ +T +P++ +TGL PG +YK + LN S P+
Sbjct: 153 QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 194
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
L W+ PD G I+ Y+V+ E + W PA + G V+ L + FRV V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 302 NKQGKSEPLT 311
N G+SEP T
Sbjct: 87 NIAGRSEPAT 96
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 73 LKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKAL 130
LKW P G ++GYLVE + W+P K V L G FRV +
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 131 NKEGESEPLETFSSIIARD 149
N G SEP + R+
Sbjct: 87 NIAGRSEPATLLQPVTIRE 105
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIW--------EKCAQTEGDTPKGKVLDLIEGNQ 394
L W PP++ G I GY++E + S W E+C T V DL G +
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFT--------VKDLPTGAR 78
Query: 395 YEFRVLAVNKGGPGEPSDPTAPHIAR 420
FRV+ VN G EP+ P R
Sbjct: 79 ILFRVVGVNIAGRSEPATLLQPVTIR 104
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
+G E + + D PS P G +K+ + + + PD GG PI Y VD + A+
Sbjct: 3 SGSSGQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 61
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
W + G T + + L PN Y+ RV AVN +G+ +
Sbjct: 62 EIWKIV-RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 101
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P +I + ++++ P+ +GG PI Y ++ KE S IW K ++ G
Sbjct: 18 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW-KIVRSHGVQTMV 76
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
+ +L YE RV AVN G G+ S
Sbjct: 77 VLNNLEPNTTYEIRVAAVNGKGQGDYS 103
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 57 PEGPLEVSNIHKDGCTLK--WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
P P V I T K +NKP GG P+ Y V+ + + +W V M V
Sbjct: 18 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 77
Query: 115 -TGLTPGHEYKFRVKALNKEGESE--PLETFSSIIARDPYS 152
L P Y+ RV A+N +G+ + +E F ++ P S
Sbjct: 78 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPSS 118
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+ +N P+ GG PI +Y V+ E + + K +R++ + T + + L+
Sbjct: 34 AKVSFNKPDSHGGVPIHHYQVDVKEVASE--IWKIVRSHGVQ---------TMVVLNNLE 82
Query: 579 RSDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
+ T + V A N +G+ D IE+ T S P
Sbjct: 83 PNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGP 116
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
+SD + GSN + G+P PT WL N + S++R +++ D L+
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLE 355
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
DSG+Y +N GT +A++ V
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAV 379
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 73 LKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNK 132
L+W P DGG P+ Y VE E V + E E V+ L PG Y FR++A NK
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANK 87
Query: 133 EG 134
G
Sbjct: 88 MG 89
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVD----KMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
A+ + L W P DGG PI Y V+ + DE P +G V L+P
Sbjct: 23 AKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDE------PREVYQGSEVECTVSSLLPGK 76
Query: 293 KYKFRVRAVNKQG 305
Y FR+RA NK G
Sbjct: 77 TYSFRLRAANKMG 89
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW--EKCAQTEGDTPKGKV 386
G P+ K+ ++L W PP +GGSPI Y +E SPI E +G + V
Sbjct: 19 GRPKAKE-----IQLRWGPPLVDGGSPISCYSVE----MSPIEKDEPREVYQGSEVECTV 69
Query: 387 LDLIEGNQYEFRVLAVNKGGPG 408
L+ G Y FR+ A NK G G
Sbjct: 70 SSLLPGKTYSFRLRAANKMGFG 91
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 521 LKWNPPEDDGGAPIEYYMVE 540
L+W PP DGG+PI Y VE
Sbjct: 28 LRWGPPLVDGGSPISCYSVE 47
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 66 IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VW--IPVGKTREPEMDVTGLTPGHE 122
IH + W+ PKD+GG + Y+VE + G W I G TRE D L PG
Sbjct: 30 IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDR--LNPGCF 87
Query: 123 YKFRVKALNKEGESEPLETF 142
Y+ RV ++ G+S E+
Sbjct: 88 YRLRVYCISDGGQSAVSESL 107
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG-RWTPAGETEGP 279
DKP P P +H+ + W P D+GG I KYVV+ + + G +W E
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW------EMI 69
Query: 280 VTGLEVEGLI----PNHKYKFRVRAVNKQGKS 307
+G E L P Y+ RV ++ G+S
Sbjct: 70 YSGATREHLCDRLNPGCFYRLRVYCISDGGQS 101
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 312 TTASIEAKNPFNQPGKPGTPEIKD-FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP- 369
++ +E ++PG P P +K + ++ W PP+ NGG+ I Y++E E +
Sbjct: 5 SSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGN 64
Query: 370 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406
WE G T + L G Y RV ++ GG
Sbjct: 65 KWE--MIYSGATREHLCDRLNPGCFYRLRVYCISDGG 99
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW 553
+ W+PP+D+GGA I Y+VE E G KW
Sbjct: 37 ITWDPPKDNGGATINKYVVEMAEGSNGN---KW 66
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW------TPAGET 276
P+PP V+ + E V L W VP +DG + V +M W P G+
Sbjct: 5 PTPPN----VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 277 E-----GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
+ G V L P H Y+FR+ AV ++ T+A + QPG P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF-----YLQPGAALDP 115
Query: 332 -------EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
EI+++ V L W+ I GY + S A EG +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 175
Query: 385 -KVLDLIEGNQYEFRV 399
K+ L YEF++
Sbjct: 176 FKIAPLETATMYEFKL 191
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-------KYDPETGVWIPVGKTR- 108
P P V+ + + L+W P++DG P+ + V+ K T IP GK +
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 62
Query: 109 EPEM------DVTGLTPGHEYKFRVKAL-----NKEGESEPLETFSSIIARDP 150
E+ VT L P H Y+FR+ A+ NKE + A DP
Sbjct: 63 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP 115
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW------TPAGET 276
P+PP V+ + E V L W VP +DG + V +M W P G+
Sbjct: 5 PTPPN----VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 277 E-----GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
+ G V L P H Y+FR+ AV ++ T+A + QPG P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF-----YLQPGAALDP 115
Query: 332 -------EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
EI+++ V L W+ I GY + S A EG +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS 175
Query: 385 -KVLDLIEGNQYEFRV 399
K+ L YEF++
Sbjct: 176 FKIAPLETATMYEFKL 191
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-------KYDPETGVWIPVGKTR- 108
P P V+ + + L+W P++DG P+ + V+ K T IP GK +
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 62
Query: 109 EPEM------DVTGLTPGHEYKFRVKAL-----NKEGESEPLETFSSIIARDP 150
E+ VT L P H Y+FR+ A+ NKE + A DP
Sbjct: 63 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP 115
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE--- 111
LD L+V+N+ T+ W P + GY + Y P G P T P
Sbjct: 2 LDAPTDLQVTNVTDTSITVSWTPPSAT----ITGYRI-TYTPSNGPGEPKELTVPPSSTS 56
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPL 139
+ +TGLTPG EY V AL ES PL
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPL 84
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 103/276 (37%), Gaps = 62/276 (22%)
Query: 452 GEPIPTKEWLCNDITIISKDRFKI-----VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506
G P P W + I + DR+++ VN D + L + D G+Y K+ G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 507 TDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL-------------IKW 553
+ +AK+ V G +EK G+ L I W
Sbjct: 515 VAEHSAKLNVYGLPY--------------IRQMEKKAIVAGETLIVTCPVAGYPIDSIVW 560
Query: 554 IRTNDKRVTIDNVDYFTK--ITIRPLQR-SDTAQYTVTATNSQG---KDQVFIEVVVTDK 607
R N F + I ++R SD A YT A N +G + + ++V+V +
Sbjct: 561 ERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 608 --PSA-PEGPIQWLLTLTDVTWEISNYLQELHSSL----MPI----SLESQYLMNDKRVT 656
P A EGP Q + YL LH S+ +P+ +L+ Q + D +T
Sbjct: 621 IIPFAFEEGPAQ-----------VGQYLT-LHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668
Query: 657 IDNVDYF-TKITIRPLQRSDTAQYTVTATNSQGKDQ 691
V + +TI ++ S +T A N G Q
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP-YINRDQLSDIKVRAGSNFEFD 447
+ + N + + A N G G+ + TA + +A+ P ++ R L + VR GS
Sbjct: 70 VTKANSGRYSLKATN--GSGQATS-TAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQ 124
Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
+ V G P P ++ + I S F+I + L + ++ DSG Y++ NS G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 508 DKGTAKVTVLG 518
TA++ V G
Sbjct: 185 ATSTAELLVQG 195
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDS 489
L + V GS F+ ++ G P+P W D +IS +I D KL +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWF-RDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ +SG Y+L N G TA++ V
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLV 97
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLT 620
V I D K+TI + ++++ +Y++ ATN G+ E++V + +AP +Q L +
Sbjct: 54 VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPPNFVQRLQS 112
Query: 621 LTDVTWEISNYLQELHSSLMPISLESQY-----LMNDKRVTIDNVDYFTKITIRPLQRSD 675
+T + S ++ + +P + Y + + I + I D
Sbjct: 113 MT--VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPED 170
Query: 676 TAQYTVTATNSQGKDQVFIEVVV 698
+ Y+V ATNS G+ E++V
Sbjct: 171 SGTYSVNATNSVGRATSTAELLV 193
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 487
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 8 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-- 545
D+ +Y + N G+ GTA + V + P +G + E +
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 546 -TGKV--LIKWIRTNDKRVTIDNVDYFTKITIRPL---------QRSDTAQYTVTATNSQ 593
+GK +I W + D IDN ++ I R +R D Y V A N
Sbjct: 128 FSGKPDPVITWQKGQD---LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 594 GKDQVFIEVVVTD 606
G DQ +E+ V D
Sbjct: 185 GIDQKTVELDVAD 197
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 77 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 514
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 515 TV 516
V
Sbjct: 194 DV 195
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 193 QRADAGFYTVTAENINGKDSVEVEVIVLD 221
+R DAGFY V A+N G D VE+ V D
Sbjct: 169 ERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP-YINRDQLSDIKVRAGSNFEFD 447
+ + N + + A N G G+ + TA + +A+ P ++ R L + VR GS
Sbjct: 70 VTKANSGRYSLKATN--GSGQATS-TAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQ 124
Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
+ V G P P ++ + I S F+I + L + ++ DSG Y++ NS G
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 508 DKGTAKVTV 516
TA++ V
Sbjct: 185 ATSTAELLV 193
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDS 489
L + V GS F+ ++ G P+P W D +IS +I D KL +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWF-RDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ +SG Y+L N G TA++ V
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLV 97
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLT 620
V I D K+TI + ++++ +Y++ ATN G+ E++V + +AP +Q L +
Sbjct: 54 VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE-TAPPNFVQRLQS 112
Query: 621 LTDVTWEISNYLQELHSSLMPISLESQY-----LMNDKRVTIDNVDYFTKITIRPLQRSD 675
+T + S ++ + +P + Y + + I + I D
Sbjct: 113 MT--VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPED 170
Query: 676 TAQYTVTATNSQGKDQVFIEVVV 698
+ Y+V ATNS G+ E++V
Sbjct: 171 SGTYSVNATNSVGRATSTAELLV 193
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 487
+++L ++ VR SN V G P P +W II+ + + K +L +
Sbjct: 6 KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 65
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-- 545
D+ +Y + N G+ GTA + V + P +G + E +
Sbjct: 66 SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 125
Query: 546 -TGKV--LIKWIRTNDKRVTIDNVDYFTKITIRPL---------QRSDTAQYTVTATNSQ 593
+GK +I W + D IDN ++ I R +R D Y V A N
Sbjct: 126 FSGKPDPVITWQKGQD---LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 182
Query: 594 GKDQVFIEVVVTD 606
G DQ +E+ V D
Sbjct: 183 GIDQKTVELDVAD 195
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
++V A N+GG S + + K+ + + + G I G+P P
Sbjct: 75 YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 132
Query: 457 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 514
W I + ++++ T L VF + +R D+G Y + KN +G D+ T ++
Sbjct: 133 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 191
Query: 515 TV 516
V
Sbjct: 192 DV 193
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+R DAGFY V A+N G D VE+ V D
Sbjct: 166 VERKDAGFYVVCAKNRFGIDQKTVELDVAD 195
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE-- 111
GLD + S+I + T+ W P+ P+ GY++ + + VG+ R+
Sbjct: 1 GLDSPTGFDSSDITANSFTVHWVAPR----APITGYIIRHHAEHS-----VGRPRQDRVP 51
Query: 112 -----MDVTGLTPGHEYKFRVKALNKEGESEPL 139
+ +T L PG EY + A+N ES PL
Sbjct: 52 PSRNSITLTNLNPGTEYVVSIIAVNGREESPPL 84
>pdb|2DB8|A Chain A, Solution Structures Of The Fn3 Domain Of Human Tripartite
Motif Protein 9
Length = 110
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
LE H + TL W +P P +GY++E D G + V +E V GL
Sbjct: 17 LEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFN 75
Query: 121 HEYKFRVKALNKEGES 136
Y RVKA NK G S
Sbjct: 76 STYNARVKAFNKTGVS 91
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P+ P L+ H TL WK P P + Y+++ D G++ G T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREV--YVGKETM 66
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKS 307
V+GL N Y RV+A NK G S
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVS 91
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 409 EPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
E D +A K V PY + L D++V GS FD V G P P W +D +
Sbjct: 24 ENEDAFLEEVAEEKPHVKPYFTKTIL-DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Query: 468 ISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
F+I D++ + L + + D YT NS G TA++ V
Sbjct: 83 KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1J8K|A Chain A, Nmr Structure Of The Fibronectin Eda Domain, Nmr, 20
Structures
Length = 94
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV--WIPVGKTREPEMDV 114
P+G L +++ D + W P+ + Y V PE G+ P E ++
Sbjct: 5 PKG-LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEEDTAEL 59
Query: 115 TGLTPGHEYKFRVKALNKEGESEPL 139
GL PG EY V AL+ + ES+PL
Sbjct: 60 QGLRPGSEYTVSVVALHDDMESQPL 84
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 494
+ V G + F + GEP+PT WL + + R ++ + ++ + D
Sbjct: 17 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDE 76
Query: 495 GIYTLAVKNSWGTDKGTAKVTV 516
G Y++ V+NS G + +T+
Sbjct: 77 GNYSVVVENSEGKQEAEFTLTI 98
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 494
+ V G + F + GEP+PT WL + + R ++ + ++ + D
Sbjct: 23 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDE 82
Query: 495 GIYTLAVKNSWGTDKGTAKVTV 516
G Y++ V+NS G + +T+
Sbjct: 83 GNYSVVVENSEGKQEAEFTLTI 104
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
D P+PP +++N +TL WK P D+G + I+ +V++ DE G G
Sbjct: 19 DIPNPP----RIANRTKNSLTLQWKAPSDNGSK-IQNFVLE-WDEGKGNGEFCQCYMGSQ 72
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKS 307
++ L P KFR+ A N G S
Sbjct: 73 KQFKITKLSPAMGCKFRLSARNDYGTS 99
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE-TGVWIPVGKTREPEMDV 114
D P ++N K+ TL+W P D+G + ++ +++E + + G + + + +
Sbjct: 19 DIPNPPRIANRTKNSLTLQWKAPSDNGSK-IQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77
Query: 115 TGLTPGHEYKFRVKALNKEGES 136
T L+P KFR+ A N G S
Sbjct: 78 TKLSPAMGCKFRLSARNDYGTS 99
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 8 INTKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRG 54
++ +P P P ++N K+ TL+W P D+G + ++ +++E D G
Sbjct: 14 LSCEPDIPNPP-RIANRTKNSLTLQWKAPSDNGSK-IQNFVLEWDEG 58
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 409 EPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
E D +A K V PY + L D+ V GS FD V G P P W +D +
Sbjct: 24 ENEDAFLEEVAEEKPHVKPYFTKTIL-DMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPV 82
Query: 468 ISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
F+I D++ + L + + D YT NS G TA++ V
Sbjct: 83 KESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG-D 493
++ + G D V G P P W N T+ S D K++ +K +F+ R D
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASD 73
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLG 518
+G Y KN G T ++ VL
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVLA 98
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG-PVTGLEVEGL 288
L V+ A VTL W D +P+ Y + A G P E +G T + GL
Sbjct: 14 LVVTETTATSVTLTW---DSGNSEPVTYYGIQY--RAAGTEGPFQEVDGVATTRYSIGGL 68
Query: 289 IPNHKYKFRVRAVNKQGKSEP 309
P +Y FRV AVN G+ P
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPP 89
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET-GVWIPVGKTREPEMDVTGLTP 119
L V+ TL W+ EP+ Y ++ T G + V + GL+P
Sbjct: 14 LVVTETTATSVTLTWDSGNS---EPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSP 70
Query: 120 GHEYKFRVKALNKEGESEPLE 140
EY FRV A+N G P E
Sbjct: 71 FSEYAFRVLAVNSIGRGPPSE 91
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 338 TDFVELAWTPPEQNGG--SPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQ 394
D E+ W EQ G SPI+ Y I+ ++P W+ + +T V+ +
Sbjct: 18 ADKAEIHW---EQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWAN 74
Query: 395 YEFRVLAVNKGGPGEPS 411
Y FRV+A NK G PS
Sbjct: 75 YTFRVIAFNKIGASPPS 91
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDS 494
+ ++ G NV G+P P WL N+ + S D + ++ + DS
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G Y L VKN +G++ V+V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSVF 314
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 108/556 (19%), Positives = 207/556 (37%), Gaps = 70/556 (12%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
K+Q + L + +D G YT AEN G + +++ ++ PP K+ +VH
Sbjct: 53 KMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVH 112
Query: 237 AEGVTLDWKVPDD---DGGQPIEKYVVDKMDEATGRWTPAGETE-----------GPVTG 282
TL + V + +G +P++ W GE V
Sbjct: 113 E---TLGFPVAFECRINGSEPLQV-----------SWYKDGELLKDDANLQTSFIHNVAT 158
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV- 341
L++ +H ++ A N G TAS AK ++ P ++K D
Sbjct: 159 LQILQTDQSHVGQYNCSASNPLG-------TASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 342 -ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
E G +PI + + P +T VL + +G+ ++
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
A N G D + + ++ +I + + S I V+ + ++ + G P W
Sbjct: 272 ASNVAG----KDSCSAQLG-VQEPPRFIKKLEPSRI-VKQDEHTRYECKIGGSPEIKVLW 325
Query: 461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCS 520
++ I +F++ + L++++ DSG YT N+ G+ + + V
Sbjct: 326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP 385
Query: 521 L---KWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKI 572
+ K +P E GA + +E T + W + + K+ I + ++ T I
Sbjct: 386 VFRKKPHPVETLKGADVH---LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL 632
I + +D +Y A+N G D + + + P +++ L+D++ + +
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITL-------KAPPRFVKKLSDISTVVGEEV 495
Query: 633 QELHSSLMPISLESQYLMNDKRVTI---DN--VDYFTKITIRPLQRSDTA---QYTVTAT 684
Q L +++ S DK + DN + Y I R++ A +YT
Sbjct: 496 Q-LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIK 554
Query: 685 NSQGKDQVFIEVVVTD 700
N G + F + V +
Sbjct: 555 NEAGTQECFATLSVLE 570
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
D ++D + GS+ + G+P P WL + + S++R ++ + V +
Sbjct: 299 DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE-- 356
Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
DSG+Y +N GT +A++TV
Sbjct: 357 --DSGMYQCVAENKHGTVYASAELTV 380
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDS 494
+ ++ G NV G+P P WL N+ + D + ++ + DS
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G Y L VKN +G++ V+V
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSVF 209
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
++DI V + ++ G P PT WL N ++++DR +I + L +
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 356
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
D+G+Y +N G +A+++V+
Sbjct: 357 DAGMYQCVAENKHGVIFSSAELSVIA 382
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
++DI V + ++ G P PT WL N ++++DR +I + L +
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLS 357
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
D+G+Y +N G +A+++V+
Sbjct: 358 DAGMYQCVAENKHGVIFSSAELSVIA 383
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT-EGDTPKGKVLDLIEGNQYEFRV 399
V ++W PP + G + +K PI + +T GD +++DL Y FR+
Sbjct: 27 VIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRI 86
Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVS 425
A N G G SDP + R KVS
Sbjct: 87 QARNSKGVGPLSDPI---LFRTLKVS 109
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 413 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472
P P R K P Q D+ G N + +G P+P W
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR----------- 148
Query: 473 FKIVNDDKSTK--------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
K++ ST LK+F+ + D GIY +N G DK A++ V
Sbjct: 149 -KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
K+ P I R + ++K+ G +G P P+ W+ D + R ++ +S
Sbjct: 98 KMKPKITRPPI-NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESG 153
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGT 507
L++ + ++ D+G Y KNS GT
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGT 178
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 72/197 (36%), Gaps = 27/197 (13%)
Query: 425 SPYINRDQLSD---IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
+PY R + D + V A + F G P P+ WL N + R +
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 482 TKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GA 532
V +S D G YT V+N +G+ + T + VL S L+ P + G+
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT---------------KITIRPL 577
+E++ + +K + N +V D Y T +++ +
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 578 QRSDTAQYTVTATNSQG 594
D +YT A NS G
Sbjct: 299 TFEDAGEYTCLAGNSIG 315
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 223 PSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGR---WTPAGE-- 275
P PG P L +SN+ VTL ++ P DG I +++V+ G W +
Sbjct: 15 PELPGPPTNLGISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 73
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
E +EV L P Y FR+R VN G S P + I+
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 115
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV------WIPVGK-TREPE-- 111
L +SNI TL++ +P DG + +LVE + GV W+ + + + EP+
Sbjct: 24 LGISNIGPRSVTLQF-RPGYDGKTSISRWLVEA---QVGVVGEGEEWLLIHQLSNEPDAR 79
Query: 112 -MDVTGLTPGHEYKFRVKALNKEGESEP 138
M+V L P Y FR++ +N G S P
Sbjct: 80 SMEVPDLNPFTCYSFRMRQVNIVGTSPP 107
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%)
Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 496
+V G N F +NV +P +W N + + + N L++ D DSG
Sbjct: 19 RVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGT 78
Query: 497 YTLAVKNSWGTDKGTAKVTVLG 518
Y N G A + V G
Sbjct: 79 YRAVCTNYKGEASDYATLDVTG 100
>pdb|3B83|A Chain A, Tba
pdb|3B83|B Chain B, Tba
pdb|3B83|C Chain C, Tba
pdb|3B83|D Chain D, Tba
pdb|3B83|E Chain E, Tba
pdb|3B83|F Chain F, Tba
pdb|3B83|G Chain G, Tba
pdb|3B83|H Chain H, Tba
Length = 100
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV------DKMDEATGRWTPAGETEGPVTGL 283
+KV+N+ + W+ P PIE +V D DE T T + +T L
Sbjct: 8 IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSS------ITSL 57
Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
+ L PN Y+ R+ A N Q S P++TT
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVSTT 87
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 43 PLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI 102
PL G + GLD ++ S+I + T+ W P+ + GY + ++ PE
Sbjct: 269 PLRG---RQKTGLDSPTGIDFSDITANSFTVHWIAPRAT----ITGYRI-RHHPEHFSGR 320
Query: 103 P----VGKTREPEMDVTGLTPGHEYKFRVKALNKEGES 136
P V +R + +T LTPG EY + ALN ES
Sbjct: 321 PREDRVPHSRN-SITLTNLTPGTEYVVSIVALNGREES 357
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 67/319 (21%), Positives = 117/319 (36%), Gaps = 64/319 (20%)
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVR 176
L+PG EY V + + ES P+ +II P + T +S +D S +
Sbjct: 66 LSPGLEYNVSVYTVKDDKESVPIS--DTIIPEVP--QLTDLSFVDI-------TDSSIGL 114
Query: 177 KVQHLDYNTKLGVRMAQRA--------------DAGFYTVTAEN------------INGK 210
+ L+ +T +G R+ A G+YTVT ING
Sbjct: 115 RWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG 174
Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD-DGGQPIEKY--VVDKMDEAT 267
+S + PP L+ +N+ + + + W P D + +Y V ++ D A
Sbjct: 175 ESAPT-TLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAE 233
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
+P+ + + L+P +Y V +V +Q +S PL +P
Sbjct: 234 LSISPSDN------AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGI--- 284
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK-EKYS--PIWEKCAQTEGDTPKG 384
+ D + + W P I GY I E +S P ++ +
Sbjct: 285 ----DFSDITANSFTVHWIAPRAT----ITGYRIRHHPEHFSGRPREDRVPHSRNSI--- 333
Query: 385 KVLDLIEGNQYEFRVLAVN 403
+ +L G +Y ++A+N
Sbjct: 334 TLTNLTPGTEYVVSIVALN 352
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 43 PLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI 102
PL G + GLD ++ S+I + T+ W P+ + GY + ++ PE
Sbjct: 177 PLRG---RQKTGLDSPTGIDFSDITANSFTVHWIAPRAT----ITGYRI-RHHPEHFSGR 228
Query: 103 P----VGKTREPEMDVTGLTPGHEYKFRVKALNKEGES 136
P V +R + +T LTPG EY + ALN ES
Sbjct: 229 PREDRVPHSRN-SITLTNLTPGTEYVVSIVALNGREES 265
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 26/283 (9%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 11 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW----NPPEDDGGAPIEYYMVEKMETDTGK 548
D+GIY ++ G + V + L + +P E G E +V ++ +
Sbjct: 71 DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAE--VVCRVSSSPAP 128
Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIRPLQ-----RSDTAQYTVTA-TNSQGKDQVFIEV 602
+ W+ N++ TI + + F + LQ +SD Y ++G+ +
Sbjct: 129 A-VSWLYHNEEVTTISD-NRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII 186
Query: 603 VVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
V+ + P A P + + E++ + S IS + N K + +N Y
Sbjct: 187 VIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS----WFRNGKLIE-ENEKY 241
Query: 663 F-----TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVV 698
T++T+R + SD Y ATN G+D Q F++V V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSP---PGGPLKVSNVHAEGVTLDWK-VPDDDGGQPI 255
Y V +NGK E+ K P P P + +G ++ + DDGG PI
Sbjct: 81 YAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPI 140
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
Y+V + + W P + ++ L N +Y+ V A N+QGKS+
Sbjct: 141 RHYLV-RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSK 192
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKYDPETGVWIPVGKTREP---- 110
+P P + +DG ++K N K DDGG P+ YLV +Y + W P + R P
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV-RYRALSSEWKP--EIRLPSGSD 165
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESE 137
+ + L EY+ V A N++G+S+
Sbjct: 166 HVMLKSLDWNAEYEVYVVAENQQGKSK 192
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 321 PFNQPGKPGTPEIKDFD--TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE------ 372
P Q P +P I + + ++ + PE GG PI+ Y E + +W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
K A EG ++ L Y R+ A+N G GE S
Sbjct: 62 KEASMEGIV---TIVGLKPETTYAVRLAALNGKGLGEIS 97
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 8 INTKPAK-PEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKDRGLD----PEGPL 61
T+P + P P + +DG ++K N K DDGG P+ YLV + R L PE L
Sbjct: 102 FKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV-RYRALSSEWKPEIRL 160
Query: 62 EVSNIHKDGCTLKWN 76
+ H +L WN
Sbjct: 161 PSGSDHVMLKSLDWN 175
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 26/196 (13%)
Query: 425 SPYINRDQLSD---IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
+PY R + D + V A + F G P P+ WL N + R +
Sbjct: 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 70
Query: 482 TKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GA 532
V +S D G YT V+N +G+ + T + VL S L+ P + G+
Sbjct: 71 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 130
Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT--------------KITIRPLQ 578
+E++ + +K + N +V D Y T ++ + +
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 579 RSDTAQYTVTATNSQG 594
D +Y ATN G
Sbjct: 191 ERDGGEYLCRATNFIG 206
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 74/201 (36%), Gaps = 37/201 (18%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---- 489
SD+ V G + G P PT EW +R + DD + + S
Sbjct: 17 SDLIVSKGEPATLNCKAEGRPTPTIEWY------KGGERVETDKDDPRSHRMLLPSGSLF 70
Query: 490 ---------KRGDSGIYTLAVKNSWG---TDKGTAKVTVLGCSLKWNPPEDDGGAPIEYY 537
R D G+Y +N G + + +V +L + NP D +
Sbjct: 71 FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMVAVGEP 128
Query: 538 MVEKMETDTG--KVLIKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
V + + G + I W + D+R+TI K+ I ++SD +Y
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG----GKLMITYTRKSDAGKYVCVG 184
Query: 590 TNSQG-KDQVFIEVVVTDKPS 609
TN G ++ E+ V ++PS
Sbjct: 185 TNMVGERESEVAELTVLERPS 205
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGI 496
+ G IG P P W+ N + +S R+ + K L++ +S+ D G
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQIENSREEDQGK 179
Query: 497 YTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
Y +NS GT+ +K T L ++ PP
Sbjct: 180 YECVAENSMGTEH--SKATNLYVKVRRVPP 207
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
L D V G +F +V G P+P WL N I + + +L + D+
Sbjct: 18 LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVAELHIQDALPE 74
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
D G YT +N+ G +A VTV
Sbjct: 75 DHGTYTCLAENALGQVSCSAWVTV 98
>pdb|2Q7N|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
pdb|2Q7N|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
Length = 488
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 172 SGMVRKVQHLDYNT-KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG-GP 229
S + +++ L T +LGV+M + +T+T N G+ V + V ++ +P
Sbjct: 333 SAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTS 392
Query: 230 LKVSNVHAEGVTLDWKVPDD----DGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV 285
LKV ++++ VT W +P + + IE + E R E + V
Sbjct: 393 LKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEV--RNATIRGAEDSTYHVAV 450
Query: 286 EGLIPNHKYKFRVRAVNK 303
+ L P Y FRVR +K
Sbjct: 451 DKLNPYTAYTFRVRCSSK 468
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 226 PGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-------KMDEATGRWTPAGETE- 277
P P V+ + E V L W VP +D G PI + V K + T P G+ +
Sbjct: 5 PPTPPNVTRLSDESVXLRWXVPRND-GLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKW 63
Query: 278 ----GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
G V L P H Y+FR+ AV ++ T+A + QPG
Sbjct: 64 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKF-----YLQPG 111
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-------KYDPETGVWIPVGKTR- 108
P P V+ + + L+W P++DG P+ + V+ K T IP GK +
Sbjct: 5 PPTPPNVTRLSDESVXLRWXVPRNDG-LPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKW 63
Query: 109 ------EPEMDVTGLTPGHEYKFRVKALNKEGESE 137
VT L P H Y+FR+ A+ +++
Sbjct: 64 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNK 98
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGN--- 393
+ FV L+W PP + G+ + +E + +T + L L GN
Sbjct: 30 SSRFVRLSWRPPAEAKGNIQTFTVFFSREG------DNRERALNTTQPGSLQLTVGNLKP 83
Query: 394 --QYEFRVLAVNKGGPGEPSDP 413
Y FRV+A N+ GPGE S P
Sbjct: 84 EAMYTFRVVAYNEWGPGESSQP 105
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
T + VE L+PNH Y FRVRA +++G +IE++
Sbjct: 73 TSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIESQ 111
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 73 LKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
+ W +P+ + PL+GY VE G + + + + V L P H Y FRV+A
Sbjct: 36 VSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQ 93
Query: 131 NKEG 134
++EG
Sbjct: 94 SQEG 97
>pdb|1WFU|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Of Mouse
Hypothetical Protein
Length = 120
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 216 EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ-PIEKYVVDKMDEATGRWTPAG 274
+V+ L KP PP V V + L W + + Q P E+++ ++E + G
Sbjct: 12 KVVPLSKPHPP----VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYG 67
Query: 275 ET-EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE--PLTTTASIEAKNP 321
G T VEGL P YKFR++ + G+ E P+ + A+ P
Sbjct: 68 VIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 125 FRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYN 184
+ ++A+N + + ++ ++++DP K V S+ SH R+ P + + Q L+ +
Sbjct: 177 YYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 185 TKLGVRMAQRAD 196
R+A+ D
Sbjct: 237 LHQLTRLAEVYD 248
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 202 VTAENINGK---DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQP 254
V AEN GK D + + + KP+PP +S +++E ++ L W P
Sbjct: 176 VEAENALGKVTSDHINFDPVYKVKPNPPHN---LSVINSEELSSILKLTWTNPSIKS-VI 231
Query: 255 IEKYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
I KY + + W+ P +T + V+ L P +Y FR+R + + GK
Sbjct: 232 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 285
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 202 VTAENINGK---DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQP 254
V AEN GK D + + + KP+PP +S +++E ++ L W P
Sbjct: 176 VEAENALGKVTSDHINFDPVYKVKPNPPHN---LSVINSEELSSILKLTWTNPSIKS-VI 231
Query: 255 IEKYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
I KY + + W+ P +T + V+ L P +Y FR+R + + GK
Sbjct: 232 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 285
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii Module
2
Length = 96
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 246 VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG 305
+ DDGG PI Y+V K W P + ++ L N +Y+ V A N+QG
Sbjct: 24 IKQDDGGSPIRHYLV-KYRALASEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 82
Query: 306 KSE 308
KS+
Sbjct: 83 KSK 85
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKYDPETGVWIPVGKTREP----E 111
P P + +DG ++K N K DDGG P+ YLV KY W P + R P
Sbjct: 3 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV-KYRALASEWKP--EIRLPSGSDH 59
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESE 137
+ + L EY+ V A N++G+S+
Sbjct: 60 VMLKSLDWNAEYEVYVVAENQQGKSK 85
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 13 AKPEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKDRGL----DPEGPLEVSNIH 67
A P P + +DG ++K N K DDGG P+ YLV K R L PE L + H
Sbjct: 1 AGPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV-KYRALASEWKPEIRLPSGSDH 59
Query: 68 KDGCTLKWN 76
+L WN
Sbjct: 60 VMLKSLDWN 68
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 125 FRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYN 184
+ ++A+N + + ++ ++++DP K V S+ SH R+ P + + Q L+ +
Sbjct: 177 YYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236
Query: 185 TKLGVRMAQRAD 196
R+A+ D
Sbjct: 237 LHQLTRLAEVYD 248
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSP---PGGPLKVSNVHAEGVTLDWK-VPDDDGGQPI 255
Y V +NGK E+ K P P P +G ++ + DDGG PI
Sbjct: 81 YAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQRGEDGNSIKVNLIKQDDGGSPI 140
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
Y+V + + W P + ++ L N +Y+ V A N+QGKS+
Sbjct: 141 RHYLV-RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSK 192
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPK-DDGGEPLEGYLVEKYDPETGVWIPVGKTREP---- 110
+P P +DG ++K N K DDGG P+ YLV +Y + W P + R P
Sbjct: 109 EPSAPKLEGQRGEDGNSIKVNLIKQDDGGSPIRHYLV-RYRALSSEWKP--EIRLPSGSD 165
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESE 137
+ + L EY+ V A N++G+S+
Sbjct: 166 HVMLKSLDWNAEYEVYVVAENQQGKSK 192
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 321 PFNQPGKPGTPEIKDFD--TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE------ 372
P Q P +P I + + ++ + PE GG PI+ Y E + +W
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
K A EG ++ L Y R+ A+N G GE S
Sbjct: 62 KEASMEGIV---TIVGLKPETTYAVRLAALNGKGLGEIS 97
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 202 VTAENINGK---DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQP 254
V AEN GK D + + + KP+PP +S +++E ++ L W P
Sbjct: 175 VEAENALGKVTSDHINFDPVYKVKPNPPHN---LSVINSEELSSILKLTWTNPSIKS-VI 230
Query: 255 IEKYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
I KY + + W+ P +T + V+ L P +Y FR+R + + GK
Sbjct: 231 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 284
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIISKDRFKIVNDDKSTKLKVF 487
R+ +S + + G + E V P P WL + ++T IS +RF ++ ++ L
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN-- 63
Query: 488 DSKRGDSGIYTLAVK-NSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME--- 543
+ D GIY + + G + ++ + P+ A E E+M
Sbjct: 64 -INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE--RGEEMTFSC 120
Query: 544 --TDTGKVLIKWIRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKD 596
+ + + I W R + ++ +N Y T++T+R + SD Y ATN G+D
Sbjct: 121 RASGSPEPAISWFR--NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED 178
Query: 597 --QVFIEVVV 604
Q F++V V
Sbjct: 179 EKQAFLQVFV 188
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 664 TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVV 698
T++T+R + SD Y ATN G+D Q F++V V
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P +P + ++ L W+ P + YI+E +E+ S K + +G+ V
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFK-PKYDGEDLAYTVK 69
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSD 412
+L +Y+F+V+A N G PS+
Sbjct: 70 NLRRSTKYKFKVIAYNSEGKSNPSE 94
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR 299
++L W P Y+++ M+E T + + +G V+ L + KYKF+V
Sbjct: 24 LSLQWSKPSGTPSDEGISYILE-MEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVI 82
Query: 300 AVNKQGKSEP 309
A N +GKS P
Sbjct: 83 AYNSEGKSNP 92
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
+L+W+KP + Y++E + +G + P + V L +YKF+V A
Sbjct: 25 SLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAY 84
Query: 131 NKEGESEPLE 140
N EG+S P E
Sbjct: 85 NSEGKSNPSE 94
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 178 VQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
V+ D++T VR A R+D+G Y ++ + N KD+ + + V++K
Sbjct: 72 VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAG---ETEGPV--TGLE 284
L+VS+ ++L W+ +P+ K+ ++ + P+G E E PV T
Sbjct: 13 LEVSDPTETTLSLRWR-------RPVAKFDRYRLTYVS----PSGKKNEMEIPVDSTSFI 61
Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELA 344
+ GL +Y + A + KS+P T S G P D + ++
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVV-------GSPKGISFSDITENSATVS 114
Query: 345 WTPPEQNGGSPIVGYIIEKKEKYSPI---WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
WTPP S V Y+ PI +G + K++ L+ G Y +++
Sbjct: 115 WTPPRSRVDSYRVSYV--------PITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIIS 166
Query: 402 VNKGGPGEP 410
V EP
Sbjct: 167 VKGFEESEP 175
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 202 VTAENINGK---DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQP 254
V AEN GK D + + + KP+PP +S +++E ++ L W P
Sbjct: 76 VEAENALGKVTSDHINFDPVYKVKPNPPHN---LSVINSEELSSILKLTWTNPSIKS-VI 131
Query: 255 IEKYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
I KY + + W+ P +T + V+ L P +Y FR+R + + GK
Sbjct: 132 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 185
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 202 VTAENINGK---DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQP 254
V AEN GK D + + + KP+PP +S +++E ++ L W P
Sbjct: 80 VEAENALGKVTSDHINFDPVYKVKPNPPHN---LSVINSEELSSILKLTWTNPSIKSVI- 135
Query: 255 IEKYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
I KY + + W+ P +T + V+ L P +Y FR+R + + GK
Sbjct: 136 ILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 189
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 63 VSNIHKDGCTLKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPVGKTREPEMDVTGLTPG 120
+S + L+W+ PK+ GE L GY ++ + D I GK + VTGL G
Sbjct: 15 ISTTAMNTALLQWHPPKELPGE-LLGYRLQYCRADEARPNTIDFGKDDQ-HFTVTGLHKG 72
Query: 121 HEYKFRVKALNKEGESEPLE 140
Y FR+ A N+ G E E
Sbjct: 73 TTYIFRLAAKNRAGLGEEFE 92
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGI 496
+ G IG P P W+ N + +S R+ + K L++ +S+ D G
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL----KDGFLQIENSREEDQGK 177
Query: 497 YTLAVKNSWGTDKGTA 512
Y +NS GT+ A
Sbjct: 178 YECVAENSMGTEHSKA 193
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 22 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 79
Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GAPIEYYMVEKMETDT 546
G YT V+N +G+ T + V+ S L+ P + G +E+ V K+ +D
Sbjct: 80 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF--VCKVYSD- 136
Query: 547 GKVLIKWIRT---NDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTVT 588
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 137 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 196
Query: 589 ATNSQG 594
A NS G
Sbjct: 197 AGNSIG 202
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 80
Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GAPIEYYMVEKMETDT 546
G YT V+N +G+ T + V+ S L+ P + G +E+ V K+ +D
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF--VCKVYSD- 137
Query: 547 GKVLIKWIRT---NDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTVT 588
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 589 ATNSQG 594
A NS G
Sbjct: 198 AGNSIG 203
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 450
E +Q ++ +A N G S P ++ R + V+P + +S ++ G N
Sbjct: 173 ETDQGKYECVATNSAGV-RYSSPANLYV-RVQNVAPRFSILPMSH-EIMPGGNVNITCVA 229
Query: 451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
+G P+P +W+ + +D + + L++ D K DS YT +S G +
Sbjct: 230 VGSPMPYVKWMQGAEDLTPEDDMPVGRN----VLELTDVK--DSANYTCVAMSSLGVIEA 283
Query: 511 TAKVTV 516
A++TV
Sbjct: 284 VAQITV 289
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
V +E+ L P Y+ +V A QG+ P ++ S P +PG +
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEG-PYSSLVSCRTHQEV--PSEPGRLAFNVVSST 113
Query: 340 FVELAWTPPEQNGG-----SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL---DLIE 391
+L+W P + G G + + P+ + D PK ++L +L E
Sbjct: 114 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPM----KKVLVDNPKNRMLLIENLRE 169
Query: 392 GNQYEFRVLAVNKGGPG 408
Y + V A N G G
Sbjct: 170 SQPYRYTVKARNGAGWG 186
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP-EIKDFDT-DF 340
L+ + L P YKFRV +N G+ P + ++ + PG PG P IK + D
Sbjct: 48 LKKQELQPGTAYKFRVAGINACGRG-PFSEISAFKT----CLPGFPGAPCAIKISKSPDG 102
Query: 341 VELAWTPPEQNGGSPIVGYII 361
L W PP G I+ Y +
Sbjct: 103 AHLTWEPPSVTSGK-IIEYSV 122
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 21 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 78
Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GAPIEYYMVEKMETDT 546
G YT V+N +G+ T + V+ S L+ P + G +E+ V K+ +D
Sbjct: 79 GNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF--VCKVYSD- 135
Query: 547 GKVLIKWIR---TNDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTVT 588
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 136 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 195
Query: 589 ATNSQG 594
A NS G
Sbjct: 196 AGNSIG 201
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 34/186 (18%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 80
Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GAPIEYYMVEKMETDT 546
G YT V+N +G+ T + V+ S L+ P + G +E+ V K+ +D
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEF--VCKVYSD- 137
Query: 547 GKVLIKWIRT---NDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTVT 588
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 589 ATNSQG 594
A NS G
Sbjct: 198 AGNSIG 203
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
V +E+ L P Y+ +V A QG+ P ++ S P +PG +
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEG-PYSSLVSCRTHQEV--PSEPGRLAFNVVSST 113
Query: 340 FVELAWTPPEQNGG-----SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL---DLIE 391
+L+W P + G G + + P+ + D PK ++L +L E
Sbjct: 114 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPM----KKVLVDNPKNRMLLIENLRE 169
Query: 392 GNQYEFRVLAVNKGGPG 408
Y + V A N G G
Sbjct: 170 SQPYRYTVKARNGAGWG 186
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
V +E+ L P Y+ +V A QG+ P ++ S P +PG +
Sbjct: 56 VPSVELTNLYPYCDYEMKVCAYGAQGEG-PYSSLVSCRTHQEV--PSEPGRLAFNVVSST 112
Query: 340 FVELAWTPPEQNGG-----SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL---DLIE 391
+L+W P + G G + + P+ + D PK ++L +L E
Sbjct: 113 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPM----KKVLVDNPKNRMLLIENLRE 168
Query: 392 GNQYEFRVLAVNKGGPG 408
Y + V A N G G
Sbjct: 169 SQPYRYTVKARNGAGWG 185
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
+ I P+ D YT ATN G++ +E+VV K S P
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
+ I P+ D YT ATN G++ +E+VV K S P
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
DAG YT A N G++S +E++V K S P
Sbjct: 77 DAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPL-------EGYLVEKYDPETGVWIPVGKT 107
L P L + + +KW+ + EP+ Y + + + W V +T
Sbjct: 161 LKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQT 220
Query: 108 REPEMDVTGLTPGHEYKFRVKALNKEGE---SEPLETFSSIIARDP 150
+ + +T + P Y+FRV A+N G + P + F S ++DP
Sbjct: 221 TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRS--SKDP 264
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 551 IKWIRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVV 603
I W R + ++ +N Y T++T+R + SD Y ATN G+D Q F++V
Sbjct: 36 ISWFR--NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
Query: 604 V 604
V
Sbjct: 94 V 94
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 664 TKITIRPLQRSDTAQYTVTATNSQGKD--QVFIEVVV 698
T++T+R + SD Y ATN G+D Q F++V V
Sbjct: 58 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 94
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
V +E+ L P Y+ +V A QG+ P ++ S P +PG +
Sbjct: 53 VPSVELTNLYPYCDYEMKVCAYGAQGEG-PYSSLVSCRTHQEV--PSEPGRLAFNVVSST 109
Query: 340 FVELAWTPPEQNGG-----SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL---DLIE 391
+L+W P + G G + + P+ + D PK ++L +L E
Sbjct: 110 VTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPM----KKVLVDNPKNRMLLIENLRE 165
Query: 392 GNQYEFRVLAVNKGGPG 408
Y + V A N G G
Sbjct: 166 SQPYRYTVKARNGAGWG 182
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 36/187 (19%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS--DK 80
Query: 495 GIYTLAVKNSWGTDKGTAKVTV---------LGCSLKWNPPEDDGGAPIEYYMVEKMETD 545
G YT V+N +G+ T + V L L N GG +E+ V K+ +D
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGG-DVEF--VCKVYSD 137
Query: 546 TGKVLIKWIR---TNDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTV 587
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 138 -AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 588 TATNSQG 594
A NS G
Sbjct: 197 LAGNSIG 203
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 484
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 187
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ + D+G YT NS G +A +TVL
Sbjct: 188 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 220
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 424 VSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
V+PY + + K+ A +F G P PT WL N R
Sbjct: 12 VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 71
Query: 481 STKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---G 531
+T + DS D G YT V+N +G+ T ++ V+ S L+ P + G
Sbjct: 72 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 131
Query: 532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY---------------FTKITIRP 576
+ +E+ + +K I N ++ DN+ Y + +R
Sbjct: 132 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRN 191
Query: 577 LQRSDTAQYTVTATNSQG 594
+ D +YT A NS G
Sbjct: 192 VSFEDAGEYTCLAGNSIG 209
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 424 VSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
V+PY + + K+ A +F G P PT WL N R
Sbjct: 11 VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 481 STKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---G 531
+T + DS D G YT V+N +G+ T ++ V+ S L+ P + G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY---------------FTKITIRP 576
+ +E+ + +K I N ++ DN+ Y + +R
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRN 190
Query: 577 LQRSDTAQYTVTATNSQG 594
+ D +YT A NS G
Sbjct: 191 VSFEDAGEYTCLAGNSIG 208
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 484
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ + D+G YT NS G +A +TVL
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
K+ ++ L V + DAG YT A N+ GKDS ++ V + P
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 544 TDTGKVLIKWIRTN-------DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 596
T T + I W + N + ++T+ V+ +T+ + + D QYT A+N GKD
Sbjct: 30 TGTAPIKITWAKDNREIRPGGNYKMTL--VENTATLTVLKVTKGDAGQYTCYASNVAGKD 87
Query: 597 QVFIEVVVTDKP 608
++ V + P
Sbjct: 88 SCSAQLGVQEPP 99
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCN---DITIISKDRFKIVN----------DDKSTKL 484
V GSN EF V +P P +WL + + + I D V D + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ + D+G YT NS G +A +TVL
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTVL 219
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 27/198 (13%)
Query: 424 VSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
V+PY + + K+ A +F G P PT WL N R
Sbjct: 11 VAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY 70
Query: 481 STKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---G 531
+T + DS D G YT V+N +G+ T ++ V+ S L+ P + G
Sbjct: 71 ATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALG 130
Query: 532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY---------------FTKITIRP 576
+ +E+ + +K I N ++ DN+ Y + +R
Sbjct: 131 SNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRN 190
Query: 577 LQRSDTAQYTVTATNSQG 594
+ D +YT A NS G
Sbjct: 191 VSFEDAGEYTCLAGNSIG 208
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 34/186 (18%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P PT WL N + R +K+ N S L D
Sbjct: 23 VPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWS--LIXESVVPSDK 80
Query: 495 GIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDG---GAPIEYYMVEKMETDT 546
G YT V+N +G+ T + V+ S L+ P + G +E+ V K+ +D
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF--VCKVYSD- 137
Query: 547 GKVLIKWIRT---NDKRVTIDNVDYFTKIT---------------IRPLQRSDTAQYTVT 588
+ I+WI+ N + D + Y + IR + D +YT
Sbjct: 138 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCL 197
Query: 589 ATNSQG 594
A NS G
Sbjct: 198 AGNSIG 203
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 77
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G YT V+N +G+ T + V+
Sbjct: 78 GNYTCVVENEYGSINHTYHLDVV 100
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
I W R +N + I N + + + P +D Y TA N G++ + +V
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 604 VTDKPSAP 611
D PS+P
Sbjct: 110 QADTPSSP 117
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 31 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 88
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G YT V+N +G+ T + V+
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVV 111
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 82
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G YT V+N +G+ T + V+
Sbjct: 83 GNYTCVVENEYGSINHTYHLDVV 105
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR---FKIVNDDKSTKLKVFDSKRGDS 494
V A + +F G P+PT WL N + R +K+ N S ++ D
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP--SDK 81
Query: 495 GIYTLAVKNSWGTDKGTAKVTVL 517
G YT V+N +G+ T + V+
Sbjct: 82 GNYTCVVENEYGSINHTYHLDVV 104
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 495
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 496 IYTLAVKNSWGTDKGTAKVTVL 517
+Y +N+ G A VTVL
Sbjct: 84 VYVCRARNAAGEAYAAAAVTVL 105
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAE-----GVTLDWKVPDDDGGQPIEKYVVDKM 263
G ++ V+ + PG PL N AE + L W P D I Y +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPL---NFKAEPESETSILLSWTPPRSD---TIANYELVYK 54
Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
D G T P T ++GL PN Y FR+ A + QG +TA I A+
Sbjct: 55 DGEHGEEQRI--TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLG---ASTAEISAR 105
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 337 DTDFVELAW-TPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
T F++L W TP G + + KE + + G+ + + +L+ Y
Sbjct: 30 STRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM-QVTIQNLMPATVY 88
Query: 396 EFRVLAVNKGGPGEPSDP 413
FRV+A NK G GE S P
Sbjct: 89 IFRVMAQNKHGSGESSAP 106
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 423 KVSPYINRDQLSDIKVRAGSNF---EFDINVIGEPIPTKEWLCNDITIISKDR---FKIV 476
K +PY + + ++ A F +F G P+PT WL N + R +K+
Sbjct: 13 KRAPYWTNTEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 72
Query: 477 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
N S ++ D G YT V+N +G+ T + V+
Sbjct: 73 NQHWSLIMESVVP--SDKGNYTCVVENEYGSINHTYHLDVV 111
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 496
+V G + F VI P W +D + ++ + L + K D G
Sbjct: 387 EVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 446
Query: 497 YTLAVKNSWGTDKGTAKVTVLGCS--LKWNPPEDDGGAP 533
YT+ KNS+GT + + V S LK+ P E AP
Sbjct: 447 YTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPMKKAP 485
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 495
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 24 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 83
Query: 496 IYTLAVKNSWGTDKGTAKVTVL 517
+Y +N+ G A VTVL
Sbjct: 84 VYVCRARNAAGEAYAAAAVTVL 105
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 341 VELAWTPPE---QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG----N 393
+ + W PP QNG I GY I +Y K TE ++ LIEG
Sbjct: 35 IMIHWQPPAPATQNG--QITGYKI----RYRKASRKSDVTETLVSGTQLSQLIEGLDRGT 88
Query: 394 QYEFRVLAVNKGGPGEPSD 412
+Y FRV A+ G G +D
Sbjct: 89 EYNFRVAALTINGTGPATD 107
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 438 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGI 496
V GS+ F + V+G+P P EW N + I DR + +D +L + D DS
Sbjct: 17 VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 497 YTLAVKNSWGTDKGTAKVTV 516
+ N G A + V
Sbjct: 77 IMVKAINIAGETSSHAFLLV 96
>pdb|3NQ5|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
pdb|3NQ5|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
R209h Mutant
Length = 303
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
G PI+ ++VD A GRWT E P GL+
Sbjct: 118 GNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLK 150
>pdb|4HD4|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD4|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant
pdb|4HD6|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
pdb|4HD6|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218f Mutant Soaked In Cuso4
Length = 303
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
G PI+ ++VD A GRWT E P GL+
Sbjct: 118 GNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLK 150
>pdb|3NM8|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NM8|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
pdb|3NPY|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NPY|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Soaked In Cuso4
pdb|3NQ0|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ0|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc
pdb|3NQ1|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NQ1|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Inhibitor Kojic Acid
pdb|3NTM|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|3NTM|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
Crystallized In The Absence Of Zinc, Partial Occupancy
Of Cub
pdb|4D87|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
pdb|4D87|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
In Complex With Sds
Length = 303
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
G PI+ ++VD A GRWT E P GL+
Sbjct: 118 GNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLK 150
>pdb|4HD7|A Chain A, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
pdb|4HD7|B Chain B, Crystal Structure Of Tyrosinase From Bacillus Megaterium
V218g Mutant Soaked In Cuso4
Length = 303
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
G PI+ ++VD A GRWT E P GL+
Sbjct: 118 GNPIKDFIVDTGPFAAGRWTTIDEQGNPSGGLK 150
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 495
++V +G+ E V+GEP P W + + +R D L + + D+G
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 82
Query: 496 IYTLAVKNSWGTDKGTAKVTVL 517
+Y +N+ G A VTVL
Sbjct: 83 VYVCRARNAAGEAYAAAAVTVL 104
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
K+ ++ L V + DAG YT A N+ GKDS ++ V P
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPP 99
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 173 GMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
G VR V+ + V A++ D G YTVT +N G+D V + V V+D
Sbjct: 92 GRVR-VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 47/223 (21%)
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVR 176
L+PG EY V + + ES P+ +II P + T +S +D S +
Sbjct: 66 LSPGLEYNVSVYTVKDDKESVPIS--DTIIPEVP--QLTDLSFVDI-------TDSSIGL 114
Query: 177 KVQHLDYNTKLGVRMAQRA--------------DAGFYTVTAEN------------INGK 210
+ L+ +T +G R+ A G+YTVT ING
Sbjct: 115 RWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG 174
Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD-DGGQPIEKY--VVDKMDEAT 267
+S + PP L+ +N+ + + + W P D + +Y V ++ D A
Sbjct: 175 ESAPT-TLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAE 233
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
+P+ + + L+P +Y V +V +Q +S PL
Sbjct: 234 LSISPSDN------AVVLTNLLPGTEYVVSVSSVYEQHESTPL 270
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
W R ++ ++ +D+ +TIR +Q SD Y T +N DQ
Sbjct: 45 WTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ 89
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKV-PDDDGGQPIEKYVVD-KMDEATGRWTPAGETE 277
+ +PSPP + + G + + DDGG PI +Y+V + + +W + +
Sbjct: 6 MREPSPPS----IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWL-EKKVQ 60
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
G + +E L Y+ ++ A N+ G SEP S+ K
Sbjct: 61 GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 102
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 222 KPSPPGGPLKVSNVHAEGVT----LDWKVPDDDGGQPIEKYVVDKMDEATGRWT--PAGE 275
KP+PP +S +++E ++ L W P I KY + + W+ P +
Sbjct: 5 KPNPPHN---LSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPED 60
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK 306
T + V+ L P +Y FR+R + + GK
Sbjct: 61 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 91
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 7 LSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 66
Query: 493 DSGIYTLAVKNSWG 506
D+GIY ++ G
Sbjct: 67 DAGIYRCQATDAKG 80
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLV-----EKYDPETGVWIPVGKTREPEMDVT 115
L VS + +D L W P + +++ EK + +P E D+T
Sbjct: 8 LVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVP---GSERSYDLT 60
Query: 116 GLTPGHEYKFRVKALNKEGESEPL 139
GL PG EY + + S PL
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,946,405
Number of Sequences: 62578
Number of extensions: 1206687
Number of successful extensions: 2836
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2447
Number of HSP's gapped (non-prelim): 414
length of query: 716
length of database: 14,973,337
effective HSP length: 106
effective length of query: 610
effective length of database: 8,340,069
effective search space: 5087442090
effective search space used: 5087442090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)