Query psy7040
Match_columns 716
No_of_seqs 371 out of 3444
Neff 11.5
Searched_HMMs 46136
Date Sat Aug 17 01:27:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4.2E-41 9E-46 347.4 54.8 632 18-698 295-1012(1051)
2 KOG4221|consensus 100.0 1.4E-38 3E-43 326.3 47.3 525 61-603 434-1015(1381)
3 KOG4221|consensus 100.0 2.7E-37 5.9E-42 316.9 50.2 595 68-701 341-1019(1381)
4 KOG3513|consensus 100.0 1E-33 2.2E-38 293.1 49.4 505 64-604 437-1012(1051)
5 KOG4222|consensus 99.9 1.5E-25 3.2E-30 229.9 26.4 549 121-709 103-752 (1281)
6 KOG4222|consensus 99.9 1.7E-21 3.7E-26 200.5 27.9 549 63-704 141-848 (1281)
7 KOG0196|consensus 99.7 1.1E-14 2.5E-19 145.7 20.8 203 215-421 324-537 (996)
8 PHA02785 IL-beta-binding prote 99.6 1.3E-13 2.9E-18 133.9 21.0 241 438-690 38-318 (326)
9 KOG0196|consensus 99.4 1.4E-11 3E-16 124.0 20.5 189 56-318 331-535 (996)
10 KOG4194|consensus 99.3 2.4E-10 5.1E-15 111.5 19.0 264 425-701 503-798 (873)
11 KOG4258|consensus 99.3 3.5E-11 7.6E-16 121.6 12.0 359 231-611 495-929 (1025)
12 cd05762 Ig8_MLCK Eighth immuno 99.3 1.5E-10 3.2E-15 90.3 13.0 85 433-517 7-91 (98)
13 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 4.1E-10 8.8E-15 85.4 12.7 82 435-516 4-86 (86)
14 KOG4194|consensus 99.2 3.9E-10 8.5E-15 110.1 15.3 214 382-603 574-794 (873)
15 cd05737 Ig_Myomesin_like_C C-t 99.2 3.7E-10 8E-15 87.4 12.2 85 432-516 7-92 (92)
16 KOG4258|consensus 99.2 2.7E-09 5.8E-14 108.4 18.9 138 281-420 782-924 (1025)
17 PF00041 fn3: Fibronectin type 99.1 3E-10 6.4E-15 87.3 9.5 83 56-139 1-85 (85)
18 cd05892 Ig_Myotilin_C C-termin 99.1 5.5E-10 1.2E-14 81.6 10.1 72 445-516 2-75 (75)
19 cd04975 Ig4_SCFR_like Fourth i 99.1 8.8E-10 1.9E-14 85.9 11.5 83 434-516 11-99 (101)
20 cd05748 Ig_Titin_like Immunogl 99.1 1.1E-09 2.4E-14 80.9 11.3 73 444-516 2-74 (74)
21 cd05747 Ig5_Titin_like M5, fif 99.1 1.6E-09 3.4E-14 84.0 12.7 89 425-514 3-91 (92)
22 cd05762 Ig8_MLCK Eighth immuno 99.1 2.7E-10 5.8E-15 88.8 8.1 68 638-705 20-97 (98)
23 KOG0613|consensus 99.1 3E-09 6.5E-14 114.0 18.0 407 72-508 9-419 (1205)
24 PF07679 I-set: Immunoglobulin 99.1 1.7E-09 3.7E-14 84.0 12.0 84 433-516 7-90 (90)
25 cd04972 Ig_TrkABC_d4 Fourth do 99.1 2.2E-09 4.8E-14 82.7 12.5 83 433-515 7-89 (90)
26 cd05893 Ig_Palladin_C C-termin 99.1 1.3E-09 2.8E-14 79.9 10.0 73 444-516 1-75 (75)
27 cd05852 Ig5_Contactin-1 Fifth 99.1 1.2E-09 2.6E-14 79.6 9.7 73 441-516 1-73 (73)
28 PF00041 fn3: Fibronectin type 99.1 9.1E-10 2E-14 84.6 8.8 83 327-410 2-84 (85)
29 cd05851 Ig3_Contactin-1 Third 99.1 1.8E-09 4E-14 82.4 10.4 80 433-516 8-87 (88)
30 cd05730 Ig3_NCAM-1_like Third 99.0 3.8E-09 8.2E-14 82.6 12.0 83 433-517 10-93 (95)
31 cd05735 Ig8_DSCAM Eight immuno 99.0 1.3E-09 2.9E-14 83.1 9.0 68 638-705 6-88 (88)
32 cd05745 Ig3_Peroxidasin Third 99.0 1.7E-09 3.8E-14 79.7 9.1 74 440-516 1-74 (74)
33 cd05859 Ig4_PDGFR-alpha Fourth 99.0 4.7E-09 1E-13 82.0 11.3 82 435-516 12-99 (101)
34 cd05891 Ig_M-protein_C C-termi 99.0 6.9E-09 1.5E-13 80.0 12.0 84 433-516 8-92 (92)
35 cd05744 Ig_Myotilin_C_like Imm 99.0 5.2E-09 1.1E-13 77.1 10.5 72 445-516 2-75 (75)
36 cd05743 Ig_Perlecan_D2_like Im 99.0 5.9E-09 1.3E-13 77.7 10.9 74 441-514 1-74 (78)
37 cd05723 Ig4_Neogenin Fourth im 99.0 6.2E-09 1.3E-13 75.9 10.1 70 444-516 2-71 (71)
38 cd04968 Ig3_Contactin_like Thi 99.0 6.3E-09 1.4E-13 79.9 10.6 81 432-516 7-87 (88)
39 cd05863 Ig2_VEGFR-3 Second imm 99.0 4.8E-09 1E-13 74.3 8.7 64 445-516 2-65 (67)
40 cd05866 Ig1_NCAM-2 First immun 99.0 1.4E-08 3.1E-13 77.5 11.8 81 433-514 7-89 (92)
41 cd05728 Ig4_Contactin-2-like F 99.0 8E-09 1.7E-13 78.5 10.3 80 433-516 6-85 (85)
42 cd05870 Ig5_NCAM-2 Fifth immun 99.0 1.1E-08 2.4E-13 80.2 11.2 83 433-515 8-97 (98)
43 cd05868 Ig4_NrCAM Fourth immun 98.9 8.4E-09 1.8E-13 76.2 9.7 75 441-517 1-76 (76)
44 cd05865 Ig1_NCAM-1 First immun 98.9 1.5E-08 3.1E-13 78.4 11.3 82 435-516 9-95 (96)
45 PHA02785 IL-beta-binding prote 98.9 2.8E-07 6E-12 90.0 23.0 219 281-509 82-319 (326)
46 PHA02826 IL-1 receptor-like pr 98.9 4.2E-08 9E-13 89.2 15.9 79 434-512 30-128 (227)
47 cd05892 Ig_Myotilin_C C-termin 98.9 3E-09 6.5E-14 77.8 6.9 61 638-698 3-75 (75)
48 cd04969 Ig5_Contactin_like Fif 98.9 1.1E-08 2.4E-13 75.2 9.8 73 441-516 1-73 (73)
49 cd05732 Ig5_NCAM-1_like Fifth 98.9 1.9E-08 4.1E-13 79.0 11.6 84 433-516 8-96 (96)
50 cd05857 Ig2_FGFR Second immuno 98.9 2E-08 4.4E-13 76.7 11.2 81 436-516 4-85 (85)
51 cd04971 Ig_TrKABC_d5 Fifth dom 98.9 1.6E-08 3.6E-13 75.3 10.2 71 446-516 3-80 (81)
52 cd05863 Ig2_VEGFR-3 Second imm 98.9 4.7E-09 1E-13 74.3 6.9 60 638-699 3-66 (67)
53 cd05853 Ig6_Contactin-4 Sixth 98.9 4.6E-09 1E-13 78.2 7.0 65 638-702 5-85 (85)
54 cd05854 Ig6_Contactin-2 Sixth 98.9 7.1E-09 1.5E-13 78.4 8.1 65 638-702 5-85 (85)
55 cd05867 Ig4_L1-CAM_like Fourth 98.9 3.1E-08 6.7E-13 73.4 11.2 74 441-516 1-75 (76)
56 cd05893 Ig_Palladin_C C-termin 98.9 5E-09 1.1E-13 76.8 6.7 61 638-698 3-75 (75)
57 cd04978 Ig4_L1-NrCAM_like Four 98.9 1.5E-08 3.3E-13 75.5 9.5 75 441-516 1-75 (76)
58 cd05869 Ig5_NCAM-1 Fifth immun 98.9 3.4E-08 7.4E-13 77.3 11.8 81 436-516 12-97 (97)
59 cd05864 Ig2_VEGFR-2 Second imm 98.9 1.3E-08 2.9E-13 73.1 8.6 67 445-516 2-68 (70)
60 cd05855 Ig_TrkB_d5 Fifth domai 98.9 2.1E-08 4.5E-13 73.5 9.6 70 446-515 3-77 (79)
61 cd05746 Ig4_Peroxidasin Fourth 98.9 1.3E-08 2.9E-13 73.6 8.3 67 445-514 2-68 (69)
62 cd04976 Ig2_VEGFR Second immun 98.9 1.9E-08 4.1E-13 73.1 9.0 68 445-516 2-69 (71)
63 cd05735 Ig8_DSCAM Eight immuno 98.9 5.2E-08 1.1E-12 74.3 11.8 77 441-517 1-82 (88)
64 cd05736 Ig2_Follistatin_like S 98.8 3E-08 6.4E-13 73.7 9.8 73 445-517 2-74 (76)
65 cd04973 Ig1_FGFR First immunog 98.8 4.2E-08 9.1E-13 73.2 9.9 76 435-515 3-78 (79)
66 cd05740 Ig_CEACAM_D4 Fourth im 98.8 6.3E-08 1.4E-12 74.2 10.9 80 433-516 10-90 (91)
67 cd05763 Ig_1 Subgroup of the i 98.8 2.3E-08 5.1E-13 74.0 8.1 72 445-516 2-74 (75)
68 cd05855 Ig_TrkB_d5 Fifth domai 98.8 2.2E-08 4.7E-13 73.4 7.6 60 638-697 3-77 (79)
69 cd05864 Ig2_VEGFR-2 Second imm 98.8 1.4E-08 3E-13 73.0 6.4 62 638-699 3-69 (70)
70 cd05760 Ig2_PTK7 Second immuno 98.8 4.2E-08 9.2E-13 72.8 9.3 65 445-511 2-67 (77)
71 cd05852 Ig5_Contactin-1 Fifth 98.8 1.4E-08 3E-13 74.0 6.5 61 638-698 6-73 (73)
72 cd05744 Ig_Myotilin_C_like Imm 98.8 2.1E-08 4.5E-13 73.9 7.2 61 638-698 3-75 (75)
73 cd04970 Ig6_Contactin_like Six 98.8 1.9E-08 4.2E-13 76.5 7.3 65 638-702 5-85 (85)
74 cd05876 Ig3_L1-CAM Third immun 98.8 4.3E-08 9.3E-13 71.4 8.8 69 445-516 2-70 (71)
75 cd05854 Ig6_Contactin-2 Sixth 98.8 1.1E-07 2.4E-12 71.9 11.3 75 443-517 2-82 (85)
76 cd05748 Ig_Titin_like Immunogl 98.8 2.5E-08 5.5E-13 73.6 7.6 61 638-698 4-74 (74)
77 cd05723 Ig4_Neogenin Fourth im 98.8 1.6E-08 3.5E-13 73.6 6.1 61 638-698 4-71 (71)
78 cd05758 Ig5_KIRREL3-like Fifth 98.8 1.7E-07 3.8E-12 73.5 12.2 81 434-514 9-97 (98)
79 cd05773 Ig8_hNephrin_like Eigh 98.8 2E-07 4.4E-12 74.3 12.4 78 440-517 22-105 (109)
80 cd04976 Ig2_VEGFR Second immun 98.8 2.6E-08 5.7E-13 72.4 6.6 62 638-699 3-70 (71)
81 cd05725 Ig3_Robo Third immunog 98.7 6E-08 1.3E-12 70.4 8.1 68 445-516 2-69 (69)
82 cd04971 Ig_TrKABC_d5 Fifth dom 98.7 4.8E-08 1E-12 72.8 7.6 61 638-698 3-80 (81)
83 cd05745 Ig3_Peroxidasin Third 98.7 2.4E-08 5.2E-13 73.6 5.9 61 638-698 7-74 (74)
84 cd05894 Ig_C5_MyBP-C C5 immuno 98.7 4.7E-08 1E-12 74.1 7.6 61 638-698 15-86 (86)
85 cd05739 Ig3_RPTP_IIa_LAR_like 98.7 1.3E-07 2.8E-12 68.0 9.5 68 441-514 1-68 (69)
86 cd05746 Ig4_Peroxidasin Fourth 98.7 3.4E-08 7.3E-13 71.5 6.4 59 638-696 3-68 (69)
87 cd05876 Ig3_L1-CAM Third immun 98.7 2.9E-08 6.2E-13 72.3 6.0 61 638-698 3-70 (71)
88 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 1.2E-07 2.7E-12 69.6 9.3 69 445-516 2-73 (74)
89 cd05858 Ig3_FGFR-2 Third immun 98.7 1.3E-07 2.8E-12 72.8 9.6 76 441-516 1-89 (90)
90 cd05750 Ig_Pro_neuregulin Immu 98.7 9.8E-08 2.1E-12 70.8 8.7 69 445-513 2-74 (75)
91 cd05764 Ig_2 Subgroup of the i 98.7 1.7E-07 3.8E-12 69.1 9.8 73 441-516 1-74 (74)
92 cd05856 Ig2_FGFRL1-like Second 98.7 1.4E-07 3E-12 71.6 9.5 78 436-515 4-81 (82)
93 cd05726 Ig4_Robo Fhird immunog 98.7 1.5E-07 3.3E-12 72.5 9.5 74 441-517 1-82 (90)
94 cd05859 Ig4_PDGFR-alpha Fourth 98.7 4.3E-08 9.3E-13 76.6 6.5 62 638-699 23-100 (101)
95 cd05760 Ig2_PTK7 Second immuno 98.7 4.8E-08 1.1E-12 72.4 6.4 61 638-698 3-74 (77)
96 PHA02826 IL-1 receptor-like pr 98.7 7.2E-07 1.6E-11 81.2 15.2 110 381-505 97-211 (227)
97 cd07693 Ig1_Robo First immunog 98.7 3E-07 6.5E-12 73.0 11.5 84 433-516 8-99 (100)
98 cd04977 Ig1_NCAM-1_like First 98.7 3.6E-07 7.9E-12 70.4 11.4 81 434-515 8-91 (92)
99 cd05731 Ig3_L1-CAM_like Third 98.7 1.3E-07 2.8E-12 69.3 8.6 69 445-516 2-70 (71)
100 cd05867 Ig4_L1-CAM_like Fourth 98.7 7.2E-08 1.6E-12 71.5 7.0 61 638-698 6-75 (76)
101 KOG3515|consensus 98.7 1E-05 2.2E-10 84.1 24.7 308 384-713 363-700 (741)
102 cd05851 Ig3_Contactin-1 Third 98.7 5E-08 1.1E-12 74.5 6.1 62 638-699 21-88 (88)
103 cd04975 Ig4_SCFR_like Fourth i 98.7 7.5E-08 1.6E-12 75.1 7.1 62 638-699 23-100 (101)
104 cd05868 Ig4_NrCAM Fourth immun 98.7 7.2E-08 1.6E-12 71.3 6.5 62 638-699 6-76 (76)
105 cd05848 Ig1_Contactin-5 First 98.6 3.6E-07 7.9E-12 70.7 10.5 68 440-509 18-86 (94)
106 cd05725 Ig3_Robo Third immunog 98.6 6.4E-08 1.4E-12 70.2 5.7 61 638-698 3-69 (69)
107 cd04969 Ig5_Contactin_like Fif 98.6 9.7E-08 2.1E-12 70.1 6.4 61 638-698 6-73 (73)
108 cd04974 Ig3_FGFR Third immunog 98.6 1.8E-07 4E-12 71.9 8.2 76 441-516 1-89 (90)
109 cd04970 Ig6_Contactin_like Six 98.6 4.9E-07 1.1E-11 68.8 10.5 75 443-517 2-82 (85)
110 cd05763 Ig_1 Subgroup of the i 98.6 8.6E-08 1.9E-12 70.9 6.1 61 638-698 3-74 (75)
111 cd05733 Ig6_L1-CAM_like Sixth 98.6 1.7E-07 3.6E-12 69.6 7.4 66 445-510 2-71 (77)
112 cd05736 Ig2_Follistatin_like S 98.6 1.8E-07 3.9E-12 69.5 7.6 63 638-700 3-75 (76)
113 cd05737 Ig_Myomesin_like_C C-t 98.6 1.3E-07 2.9E-12 73.1 7.1 61 638-698 21-92 (92)
114 cd05724 Ig2_Robo Second immuno 98.6 4E-07 8.7E-12 69.7 9.8 73 434-509 4-78 (86)
115 cd07702 Ig2_VEGFR-1 Second imm 98.6 4.5E-07 9.7E-12 65.2 9.1 64 445-511 2-65 (72)
116 cd05773 Ig8_hNephrin_like Eigh 98.6 2.4E-07 5.2E-12 73.9 8.5 66 638-703 28-109 (109)
117 cd05731 Ig3_L1-CAM_like Third 98.6 1.1E-07 2.3E-12 69.8 5.9 61 638-698 3-70 (71)
118 cd05756 Ig1_IL1R_like First im 98.6 2.8E-07 6.1E-12 71.0 8.1 80 435-516 8-94 (94)
119 cd05722 Ig1_Neogenin First imm 98.6 5.9E-07 1.3E-11 70.1 10.1 78 434-514 7-93 (95)
120 cd05749 Ig2_Tyro3_like Second 98.6 6E-07 1.3E-11 66.7 9.4 70 433-510 5-75 (81)
121 cd05765 Ig_3 Subgroup of the i 98.6 4E-07 8.6E-12 68.8 8.7 75 441-516 1-81 (81)
122 cd05874 Ig6_NrCAM Sixth immuno 98.6 3.4E-07 7.3E-12 67.7 8.0 66 445-510 2-71 (77)
123 cd04972 Ig_TrkABC_d4 Fourth do 98.6 2.4E-07 5.1E-12 71.4 7.5 61 638-698 20-90 (90)
124 cd04978 Ig4_L1-NrCAM_like Four 98.6 1.8E-07 4E-12 69.6 6.6 61 638-698 6-75 (76)
125 cd05857 Ig2_FGFR Second immuno 98.6 1.7E-07 3.7E-12 71.5 6.6 61 638-698 14-85 (85)
126 cd05853 Ig6_Contactin-4 Sixth 98.6 6.4E-07 1.4E-11 66.8 9.3 75 443-517 2-82 (85)
127 cd05730 Ig3_NCAM-1_like Third 98.6 2.5E-07 5.4E-12 72.3 7.5 63 638-700 23-94 (95)
128 cd05738 Ig2_RPTP_IIa_LAR_like 98.5 3.1E-07 6.7E-12 67.5 6.8 61 638-698 3-73 (74)
129 cd05875 Ig6_hNeurofascin_like 98.5 6.3E-07 1.4E-11 66.2 8.4 65 445-511 2-72 (77)
130 cd05850 Ig1_Contactin-2 First 98.5 2.3E-06 4.9E-11 66.3 11.7 68 441-510 19-87 (94)
131 cd04973 Ig1_FGFR First immunog 98.5 2.3E-07 5E-12 69.2 5.5 61 638-698 14-79 (79)
132 cd05865 Ig1_NCAM-1 First immun 98.5 3.5E-07 7.7E-12 70.7 6.7 61 638-698 20-95 (96)
133 cd05849 Ig1_Contactin-1 First 98.5 1.4E-06 3.1E-11 67.0 10.1 66 441-510 19-86 (93)
134 KOG0613|consensus 98.5 4E-06 8.7E-11 90.8 16.5 458 56-600 141-615 (1205)
135 cd04968 Ig3_Contactin_like Thi 98.5 4.1E-07 8.9E-12 69.8 6.8 62 638-699 21-88 (88)
136 cd05728 Ig4_Contactin-2-like F 98.5 3.6E-07 7.7E-12 69.4 5.9 61 638-698 19-85 (85)
137 cd05750 Ig_Pro_neuregulin Immu 98.5 4.9E-07 1.1E-11 67.1 6.3 58 638-695 3-74 (75)
138 cd05891 Ig_M-protein_C C-termi 98.5 9.9E-07 2.1E-11 68.0 8.2 54 645-698 32-92 (92)
139 cd07701 Ig1_Necl-3 First (N-te 98.5 2.9E-06 6.2E-11 65.7 10.8 82 433-515 4-94 (95)
140 cd05742 Ig1_VEGFR_like First i 98.4 1.4E-06 3.1E-11 66.0 8.7 76 441-516 1-83 (84)
141 cd05895 Ig_Pro_neuregulin-1 Im 98.4 1.9E-06 4.1E-11 63.9 9.2 69 445-513 2-75 (76)
142 KOG4802|consensus 98.4 6.7E-06 1.5E-10 76.8 14.2 180 223-410 145-342 (516)
143 cd05856 Ig2_FGFRL1-like Second 98.4 5.1E-07 1.1E-11 68.4 6.0 61 638-698 14-82 (82)
144 cd05729 Ig2_FGFR_like Second i 98.4 4.1E-06 8.9E-11 64.0 11.0 80 436-515 4-84 (85)
145 cd05895 Ig_Pro_neuregulin-1 Im 98.4 6.9E-07 1.5E-11 66.3 6.3 58 638-695 3-75 (76)
146 cd05734 Ig7_DSCAM Seventh immu 98.4 1.9E-06 4.1E-11 64.5 8.6 67 445-514 2-77 (79)
147 cd05739 Ig3_RPTP_IIa_LAR_like 98.4 7.3E-07 1.6E-11 64.1 6.1 57 638-696 6-68 (69)
148 PF07679 I-set: Immunoglobulin 98.4 6.3E-07 1.4E-11 69.4 6.2 61 638-698 20-90 (90)
149 cd05866 Ig1_NCAM-2 First immun 98.4 1.1E-06 2.4E-11 67.1 7.2 61 638-698 20-91 (92)
150 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 3.5E-06 7.6E-11 63.6 9.8 76 441-516 1-82 (84)
151 cd05747 Ig5_Titin_like M5, fif 98.4 1.1E-06 2.3E-11 68.1 7.1 59 638-696 23-91 (92)
152 cd05743 Ig_Perlecan_D2_like Im 98.4 8E-07 1.7E-11 66.2 6.2 61 638-698 6-76 (78)
153 cd05869 Ig5_NCAM-1 Fifth immun 98.4 1.2E-06 2.7E-11 68.5 7.4 61 638-698 22-97 (97)
154 cd05726 Ig4_Robo Fhird immunog 98.4 1.1E-06 2.4E-11 67.7 7.0 66 638-703 6-86 (90)
155 cd05740 Ig_CEACAM_D4 Fourth im 98.4 9.7E-07 2.1E-11 67.6 6.5 54 645-698 33-90 (91)
156 cd05898 Ig5_KIRREL3 Fifth immu 98.4 7.2E-06 1.6E-10 63.0 11.0 82 433-514 8-97 (98)
157 cd07702 Ig2_VEGFR-1 Second imm 98.4 1.2E-06 2.6E-11 63.1 6.1 60 638-697 3-69 (72)
158 cd04974 Ig3_FGFR Third immunog 98.3 1.4E-06 3E-11 67.0 6.7 62 638-699 6-90 (90)
159 cd00063 FN3 Fibronectin type 3 98.3 7.1E-06 1.5E-10 63.9 11.0 83 57-140 3-87 (93)
160 cd05882 Ig1_Necl-1 First (N-te 98.3 1.3E-05 2.8E-10 61.8 11.8 71 434-504 5-84 (95)
161 cd00063 FN3 Fibronectin type 3 98.3 1.2E-05 2.6E-10 62.6 11.8 86 326-412 2-87 (93)
162 cd05732 Ig5_NCAM-1_like Fifth 98.3 1.9E-06 4.2E-11 67.5 7.1 61 638-698 21-96 (96)
163 cd05764 Ig_2 Subgroup of the i 98.3 1.4E-06 3.1E-11 64.2 6.0 61 638-698 6-74 (74)
164 cd05860 Ig4_SCFR Fourth immuno 98.3 1.5E-05 3.3E-10 60.6 11.0 84 434-517 11-100 (101)
165 cd05870 Ig5_NCAM-2 Fifth immun 98.3 2.6E-06 5.6E-11 66.8 7.1 61 638-698 21-98 (98)
166 cd05754 Ig3_Perlecan_like Thir 98.3 4.9E-06 1.1E-10 63.3 8.4 76 433-514 8-84 (85)
167 cd05858 Ig3_FGFR-2 Third immun 98.3 2.3E-06 5E-11 65.8 6.5 61 638-698 6-89 (90)
168 cd05733 Ig6_L1-CAM_like Sixth 98.3 2.3E-06 5E-11 63.4 5.9 54 638-691 3-70 (77)
169 cd05848 Ig1_Contactin-5 First 98.2 3.1E-06 6.7E-11 65.5 6.5 54 638-691 24-86 (94)
170 cd04967 Ig1_Contactin First Ig 98.2 1E-05 2.2E-10 62.4 9.4 67 441-509 19-86 (91)
171 cd04977 Ig1_NCAM-1_like First 98.2 4.8E-06 1E-10 64.2 7.3 60 638-697 20-91 (92)
172 cd05849 Ig1_Contactin-1 First 98.2 5.8E-06 1.2E-10 63.7 7.3 59 638-696 24-91 (93)
173 cd05874 Ig6_NrCAM Sixth immuno 98.2 4.9E-06 1.1E-10 61.5 6.5 55 638-692 3-71 (77)
174 cd05765 Ig_3 Subgroup of the i 98.2 3.9E-06 8.4E-11 63.3 6.0 61 638-698 6-81 (81)
175 cd05873 Ig_Sema4D_like Immunog 98.2 1.3E-05 2.8E-10 60.0 8.6 68 433-505 3-71 (87)
176 cd05757 Ig2_IL1R_like Second i 98.2 1.4E-05 2.9E-10 61.2 8.9 76 436-515 5-85 (92)
177 cd04979 Ig_Semaphorin_C Immuno 98.2 1.1E-05 2.4E-10 61.9 8.6 80 434-516 4-86 (89)
178 cd05850 Ig1_Contactin-2 First 98.2 7.2E-06 1.6E-10 63.5 7.3 59 638-696 24-92 (94)
179 cd05875 Ig6_hNeurofascin_like 98.2 6.4E-06 1.4E-10 60.9 6.6 56 638-693 3-72 (77)
180 cd05742 Ig1_VEGFR_like First i 98.1 7.7E-06 1.7E-10 62.0 6.7 61 638-698 6-83 (84)
181 cd05758 Ig5_KIRREL3-like Fifth 98.1 8.6E-06 1.9E-10 63.8 7.0 59 638-696 21-97 (98)
182 cd05734 Ig7_DSCAM Seventh immu 98.1 8.7E-06 1.9E-10 60.8 6.7 60 638-697 3-78 (79)
183 cd05724 Ig2_Robo Second immuno 98.1 6.3E-06 1.4E-10 63.0 6.0 60 638-697 16-85 (86)
184 TIGR00864 PCC polycystin catio 98.1 0.057 1.2E-06 65.3 47.6 273 393-702 1754-2042(2740)
185 cd05754 Ig3_Perlecan_like Thir 98.1 5.3E-06 1.2E-10 63.1 5.2 52 645-696 33-84 (85)
186 cd05756 Ig1_IL1R_like First im 98.1 7.4E-06 1.6E-10 63.1 5.8 54 645-698 35-94 (94)
187 cd05749 Ig2_Tyro3_like Second 98.1 8.8E-06 1.9E-10 60.4 5.9 52 638-691 18-74 (81)
188 cd05752 Ig1_FcgammaR_like Frst 98.1 1.9E-05 4.1E-10 58.3 7.3 59 435-504 9-68 (78)
189 cd05757 Ig2_IL1R_like Second i 98.1 1.5E-05 3.2E-10 61.0 6.8 54 645-698 31-86 (92)
190 PF10179 DUF2369: Uncharacteri 98.1 0.0066 1.4E-07 56.8 25.2 227 177-408 7-286 (300)
191 cd05861 Ig1_PDGFR-alphabeta Fr 98.0 3.3E-05 7.3E-10 58.2 8.4 62 638-699 6-83 (84)
192 KOG4802|consensus 98.0 0.00023 5.1E-09 66.9 15.2 176 56-309 146-342 (516)
193 cd05722 Ig1_Neogenin First imm 98.0 1.4E-05 3E-10 62.3 6.2 61 638-698 19-95 (95)
194 smart00410 IG_like Immunoglobu 98.0 0.0002 4.3E-09 54.6 12.5 82 435-516 3-85 (86)
195 smart00409 IG Immunoglobulin. 98.0 0.0002 4.3E-09 54.6 12.5 82 435-516 3-85 (86)
196 cd05729 Ig2_FGFR_like Second i 98.0 2E-05 4.2E-10 60.2 6.6 54 645-698 25-85 (85)
197 cd07693 Ig1_Robo First immunog 98.0 2.5E-05 5.3E-10 61.9 7.3 61 638-698 21-99 (100)
198 cd05717 Ig1_Necl-1-3_like Firs 98.0 0.0001 2.2E-09 57.4 10.4 81 434-515 5-94 (95)
199 cd05845 Ig2_L1-CAM_like Second 98.0 3.1E-05 6.6E-10 58.8 6.8 79 426-507 3-84 (95)
200 smart00060 FN3 Fibronectin typ 98.0 8.6E-05 1.9E-09 56.0 9.6 74 58-134 4-81 (83)
201 TIGR00864 PCC polycystin catio 97.9 0.11 2.4E-06 63.0 44.8 217 393-625 1925-2145(2740)
202 smart00408 IGc2 Immunoglobulin 97.9 4.1E-05 8.9E-10 54.2 7.2 63 440-506 1-63 (63)
203 cd05752 Ig1_FcgammaR_like Frst 97.9 2.5E-05 5.4E-10 57.6 6.0 37 645-686 32-68 (78)
204 KOG3515|consensus 97.9 0.00062 1.3E-08 71.3 17.7 446 230-703 15-497 (741)
205 cd05727 Ig2_Contactin-2-like S 97.9 3.4E-05 7.3E-10 58.7 6.4 73 434-508 11-86 (96)
206 cd07690 Ig1_CD4 First immunogl 97.9 9.8E-05 2.1E-09 56.4 8.9 72 436-507 2-90 (94)
207 PF13895 Ig_2: Immunoglobulin 97.9 9E-05 1.9E-09 55.7 8.6 70 436-515 9-79 (80)
208 smart00060 FN3 Fibronectin typ 97.9 0.00019 4.1E-09 54.0 10.4 77 327-407 3-82 (83)
209 cd04967 Ig1_Contactin First Ig 97.8 3.8E-05 8.3E-10 59.2 5.9 54 638-691 24-86 (91)
210 cd05862 Ig1_VEGFR First immuno 97.8 6.6E-05 1.4E-09 56.8 6.6 56 645-700 19-86 (86)
211 cd05871 Ig_Semaphorin_classIII 97.8 0.00028 6E-09 54.0 10.0 77 435-516 5-88 (91)
212 cd05753 Ig2_FcgammaR_like Seco 97.8 9.7E-05 2.1E-09 55.5 7.2 65 436-508 9-74 (83)
213 PF00047 ig: Immunoglobulin do 97.8 0.00014 3.1E-09 51.6 7.4 61 441-501 1-64 (64)
214 cd05862 Ig1_VEGFR First immuno 97.8 0.00018 3.9E-09 54.5 8.2 76 441-516 1-84 (86)
215 COG3401 Fibronectin type 3 dom 97.8 0.013 2.9E-07 54.5 21.3 246 237-510 83-334 (343)
216 cd05881 Ig1_Necl-2 First (N-te 97.7 0.0008 1.7E-08 51.4 11.3 72 434-505 5-85 (95)
217 cd05898 Ig5_KIRREL3 Fifth immu 97.7 0.0001 2.2E-09 56.7 6.4 59 638-696 21-97 (98)
218 cd04979 Ig_Semaphorin_C Immuno 97.7 8E-05 1.7E-09 57.1 5.6 63 638-700 16-88 (89)
219 KOG4367|consensus 97.7 5.6E-05 1.2E-09 71.1 5.4 92 55-147 436-530 (699)
220 cd05885 Ig2_Necl-4 Second immu 97.7 0.00013 2.9E-09 53.3 6.3 53 638-690 4-69 (80)
221 cd05753 Ig2_FcgammaR_like Seco 97.7 7.8E-05 1.7E-09 56.0 5.2 44 645-690 31-74 (83)
222 PF10179 DUF2369: Uncharacteri 97.6 0.057 1.2E-06 50.7 26.3 223 477-701 10-297 (300)
223 cd05897 Ig2_IL1R2_like Second 97.6 0.00018 3.8E-09 55.0 6.5 47 645-691 31-82 (95)
224 cd05897 Ig2_IL1R2_like Second 97.6 0.00038 8.2E-09 53.1 7.8 72 437-509 6-82 (95)
225 KOG3632|consensus 97.6 0.00046 1E-08 72.4 10.6 262 61-413 584-861 (1335)
226 KOG4152|consensus 97.6 0.012 2.7E-07 57.5 19.3 126 282-410 648-788 (830)
227 cd05759 Ig2_KIRREL3-like Secon 97.6 0.00081 1.8E-08 50.5 9.4 67 444-510 2-74 (82)
228 smart00408 IGc2 Immunoglobulin 97.5 0.00021 4.6E-09 50.4 5.4 51 638-688 7-63 (63)
229 cd05873 Ig_Sema4D_like Immunog 97.5 0.00028 6E-09 52.9 5.8 50 638-687 16-71 (87)
230 cd05885 Ig2_Necl-4 Second immu 97.4 0.00067 1.4E-08 49.7 6.9 65 444-508 2-69 (80)
231 cd05771 IgC_Tapasin_R Tapasin- 97.4 0.003 6.4E-08 53.3 11.7 61 186-246 2-62 (139)
232 cd05896 Ig1_IL1RAPL-1_like Fir 97.4 0.0014 3E-08 50.2 8.5 79 435-515 9-103 (104)
233 COG3401 Fibronectin type 3 dom 97.4 0.014 3.1E-07 54.3 16.3 247 67-409 82-333 (343)
234 cd05882 Ig1_Necl-1 First (N-te 97.4 0.00065 1.4E-08 52.3 6.7 59 638-697 17-94 (95)
235 cd05872 Ig_Sema4B_like Immunog 97.3 0.002 4.3E-08 48.0 8.6 64 434-502 4-67 (85)
236 cd04983 IgV_TCR_alpha_like Imm 97.2 0.0027 5.9E-08 50.9 9.3 73 434-506 6-94 (109)
237 cd05771 IgC_Tapasin_R Tapasin- 97.2 0.0026 5.7E-08 53.6 9.5 110 571-688 2-132 (139)
238 cd07701 Ig1_Necl-3 First (N-te 97.2 0.0011 2.4E-08 51.2 6.1 34 664-698 62-95 (95)
239 PF13895 Ig_2: Immunoglobulin 97.2 0.00065 1.4E-08 50.9 4.8 56 638-697 19-79 (80)
240 PF00047 ig: Immunoglobulin do 97.1 0.00055 1.2E-08 48.5 3.6 46 638-683 6-64 (64)
241 cd05751 Ig1_LILRB1_like First 97.1 0.0019 4.1E-08 49.6 6.5 65 436-504 11-75 (91)
242 PF01108 Tissue_fac: Tissue fa 97.0 0.0049 1.1E-07 48.9 8.8 80 54-136 21-105 (107)
243 PF13927 Ig_3: Immunoglobulin 97.0 0.00088 1.9E-08 49.4 4.3 57 444-503 18-75 (75)
244 cd05727 Ig2_Contactin-2-like S 97.0 0.00082 1.8E-08 51.3 4.0 53 638-690 23-86 (96)
245 cd05900 Ig_Aggrecan Immunoglob 97.0 0.0078 1.7E-07 47.9 9.7 77 441-517 2-109 (112)
246 cd05714 Ig_CSPGs_LP Immunoglob 97.0 0.011 2.4E-07 47.0 10.7 77 441-517 2-103 (106)
247 cd00099 IgV Immunoglobulin var 97.0 0.0039 8.4E-08 49.6 8.1 70 437-506 2-91 (105)
248 cd05759 Ig2_KIRREL3-like Secon 97.0 0.0028 6E-08 47.6 6.7 60 638-697 4-79 (82)
249 cd05899 IgV_TCR_beta Immunoglo 97.0 0.0052 1.1E-07 49.3 8.7 71 434-505 6-95 (110)
250 cd05860 Ig4_SCFR Fourth immuno 97.0 0.0037 8E-08 47.8 6.8 56 645-700 35-101 (101)
251 cd05896 Ig1_IL1RAPL-1_like Fir 96.9 0.0023 4.9E-08 49.1 5.7 54 645-698 42-104 (104)
252 cd05872 Ig_Sema4B_like Immunog 96.9 0.0021 4.6E-08 47.8 5.3 61 638-699 16-81 (85)
253 cd05871 Ig_Semaphorin_classIII 96.9 0.0025 5.5E-08 48.7 5.8 37 664-700 53-90 (91)
254 cd05751 Ig1_LILRB1_like First 96.9 0.0023 5E-08 49.1 5.6 42 645-686 31-75 (91)
255 cd05877 Ig_LP_like Immunoglobu 96.8 0.015 3.3E-07 46.3 9.9 77 441-517 2-103 (106)
256 cd05879 Ig_P0 Immunoglobulin ( 96.8 0.03 6.5E-07 45.0 11.2 74 435-508 7-106 (116)
257 cd05718 Ig1_PVR_like First imm 96.8 0.015 3.2E-07 45.5 9.4 74 443-516 2-97 (98)
258 smart00409 IG Immunoglobulin. 96.7 0.0067 1.5E-07 45.8 7.0 54 645-698 25-85 (86)
259 smart00410 IG_like Immunoglobu 96.7 0.0067 1.5E-07 45.8 7.0 54 645-698 25-85 (86)
260 cd04980 IgV_L_kappa Immunoglob 96.7 0.011 2.5E-07 46.9 8.3 71 434-504 8-93 (106)
261 cd05713 Ig_MOG_like Immunoglob 96.7 0.023 5E-07 44.6 9.8 37 480-516 63-99 (100)
262 cd05717 Ig1_Necl-1-3_like Firs 96.6 0.014 2.9E-07 45.4 8.3 34 664-698 62-95 (95)
263 cd04982 IgV_TCR_gamma Immunogl 96.6 0.014 3E-07 47.4 8.2 70 434-503 6-98 (116)
264 cd07690 Ig1_CD4 First immunogl 96.6 0.0042 9.2E-08 47.5 4.7 27 664-690 65-91 (94)
265 KOG4367|consensus 96.5 0.0034 7.3E-08 59.5 4.4 76 235-313 450-525 (699)
266 cd05878 Ig_Aggrecan_like Immun 96.4 0.043 9.3E-07 43.8 10.0 77 441-517 2-107 (110)
267 cd04984 IgV_L_lambda Immunoglo 96.4 0.019 4E-07 44.9 7.6 67 437-503 2-84 (98)
268 cd05774 Ig_CEACAM_D1 First imm 96.3 0.028 6E-07 44.2 8.2 67 437-506 9-94 (105)
269 COG4733 Phage-related protein, 96.3 0.91 2E-05 48.3 21.0 137 268-410 649-785 (952)
270 cd05886 Ig1_Nectin-1_like Firs 96.3 0.045 9.8E-07 42.4 9.0 35 664-698 63-98 (99)
271 cd05880 Ig_EVA1 Immunoglobulin 96.3 0.05 1.1E-06 43.9 9.6 74 434-507 6-104 (115)
272 cd05775 Ig_SLAM-CD84_like_N N- 96.2 0.036 7.8E-07 43.1 8.4 69 440-508 3-87 (97)
273 cd05741 Ig_CEACAM_D1_like Firs 96.0 0.054 1.2E-06 41.7 8.6 67 441-508 1-83 (92)
274 PF09294 Interfer-bind: Interf 96.0 0.014 3E-07 46.5 5.4 72 57-130 5-87 (106)
275 PF13927 Ig_3: Immunoglobulin 96.0 0.013 2.7E-07 43.0 4.8 25 661-685 51-75 (75)
276 cd05886 Ig1_Nectin-1_like Firs 96.0 0.019 4.1E-07 44.5 5.7 37 183-219 61-98 (99)
277 cd05883 Ig2_Necl-2 Second immu 96.0 0.044 9.5E-07 40.4 7.1 62 638-699 4-80 (82)
278 cd05713 Ig_MOG_like Immunoglob 95.9 0.026 5.6E-07 44.3 6.1 37 183-219 63-99 (100)
279 cd05883 Ig2_Necl-2 Second immu 95.8 0.058 1.3E-06 39.8 7.2 62 444-505 2-67 (82)
280 cd05711 Ig_FcalphaRI Immunoglo 95.8 0.033 7.1E-07 42.9 6.3 67 436-503 10-76 (94)
281 cd07705 Ig2_Necl-1 Second immu 95.8 0.094 2E-06 39.2 8.5 63 444-507 2-71 (83)
282 cd07691 Ig_CD3_gamma_delta Imm 95.8 0.021 4.5E-07 39.5 4.3 44 638-685 11-54 (69)
283 cd05902 Ig_Neurocan Immunoglob 95.7 0.16 3.4E-06 40.3 9.7 38 480-517 70-107 (110)
284 cd05888 Ig1_Nectin-4_like Frst 95.7 0.034 7.3E-07 43.5 6.0 37 183-219 62-99 (100)
285 cd05714 Ig_CSPGs_LP Immunoglob 95.6 0.024 5.2E-07 45.1 5.0 39 662-700 66-104 (106)
286 cd05900 Ig_Aggrecan Immunoglob 95.6 0.049 1.1E-06 43.4 6.7 40 182-221 71-110 (112)
287 cd05715 Ig_P0-like Immunoglobu 95.5 0.16 3.5E-06 41.1 9.7 73 434-506 6-104 (116)
288 KOG3632|consensus 95.5 0.12 2.5E-06 55.4 10.7 89 221-313 767-862 (1335)
289 cd05755 Ig2_ICAM-1_like Second 95.5 0.064 1.4E-06 41.4 6.8 70 437-506 12-86 (100)
290 cd05761 Ig2_Necl-1-4_like Seco 95.4 0.14 3E-06 38.2 8.4 64 444-508 2-71 (82)
291 PF01108 Tissue_fac: Tissue fa 95.4 0.16 3.4E-06 40.3 9.1 81 324-407 21-104 (107)
292 cd05877 Ig_LP_like Immunoglobu 95.4 0.045 9.8E-07 43.5 6.1 39 183-221 66-104 (106)
293 cd05884 Ig2_Necl-3 Second immu 95.4 0.13 2.7E-06 38.5 8.0 63 444-506 2-70 (83)
294 cd05878 Ig_Aggrecan_like Immun 95.4 0.053 1.1E-06 43.3 6.3 40 182-221 69-108 (110)
295 cd05887 Ig1_Nectin-3_like Firs 95.3 0.21 4.6E-06 38.4 9.1 38 479-516 57-95 (96)
296 PF07686 V-set: Immunoglobulin 95.3 0.15 3.2E-06 41.1 9.0 71 434-504 9-101 (114)
297 PHA03376 BARF1; Provisional 95.3 1.2 2.5E-05 38.3 13.7 121 436-557 21-162 (221)
298 cd05845 Ig2_L1-CAM_like Second 95.3 0.019 4.1E-07 43.8 3.2 52 638-689 23-84 (95)
299 cd05888 Ig1_Nectin-4_like Frst 95.2 0.071 1.5E-06 41.7 6.4 36 663-698 63-99 (100)
300 cd05901 Ig_Versican Immunoglob 95.2 0.49 1.1E-05 37.8 10.9 38 480-517 77-114 (117)
301 PHA02987 Ig domain OX-2-like p 95.1 0.25 5.5E-06 42.4 9.7 84 434-517 23-122 (189)
302 cd00098 IgC Immunoglobulin Con 95.1 0.096 2.1E-06 40.6 7.0 69 439-507 11-87 (95)
303 cd07706 IgV_TCR_delta Immunogl 95.0 0.15 3.3E-06 41.3 8.1 70 434-503 7-93 (116)
304 cd07705 Ig2_Necl-1 Second immu 95.0 0.096 2.1E-06 39.2 6.3 53 638-690 4-72 (83)
305 cd05718 Ig1_PVR_like First imm 95.0 0.1 2.2E-06 40.7 6.8 37 183-219 60-97 (98)
306 cd05901 Ig_Versican Immunoglob 95.0 0.18 3.9E-06 40.1 8.0 39 662-700 77-115 (117)
307 KOG4152|consensus 94.5 0.18 4E-06 49.8 8.4 123 572-695 649-791 (830)
308 cd00096 Ig Immunoglobulin doma 94.4 0.25 5.3E-06 35.2 7.5 61 445-505 2-66 (74)
309 PF09294 Interfer-bind: Interf 94.4 0.12 2.7E-06 41.0 6.0 70 331-403 8-88 (106)
310 cd07700 IgV_CD8_beta Immunoglo 94.4 0.25 5.4E-06 39.3 7.7 67 437-503 2-93 (107)
311 cd05761 Ig2_Necl-1-4_like Seco 94.4 0.15 3.3E-06 38.0 6.1 53 638-690 4-71 (82)
312 cd04983 IgV_TCR_alpha_like Imm 94.3 0.1 2.2E-06 41.7 5.4 27 662-688 68-94 (109)
313 cd05711 Ig_FcalphaRI Immunoglo 94.3 0.13 2.9E-06 39.6 5.7 41 645-685 30-76 (94)
314 cd07694 Ig2_CD4 Second immunog 94.3 0.46 1E-05 35.2 8.0 73 437-515 10-84 (88)
315 cd05846 Ig1_MRC-OX-2_like Firs 94.3 0.34 7.3E-06 37.6 8.1 76 441-516 1-96 (97)
316 cd05720 Ig_CD8_alpha Immunoglo 94.3 0.25 5.4E-06 39.0 7.4 66 438-503 3-90 (104)
317 cd05716 Ig_pIgR Immunoglobulin 94.2 0.21 4.5E-06 38.9 6.9 70 436-505 2-87 (98)
318 cd05712 Ig_Siglec_N Immunoglob 94.2 0.44 9.6E-06 38.7 9.1 72 433-504 6-102 (119)
319 cd05887 Ig1_Nectin-3_like Firs 94.2 0.2 4.4E-06 38.5 6.5 37 183-219 58-95 (96)
320 cd07692 Ig_CD3_epsilon Immunog 94.2 0.12 2.5E-06 35.7 4.6 44 638-686 12-56 (65)
321 PHA02982 hypothetical protein; 93.8 0.85 1.8E-05 39.5 9.8 103 438-542 36-161 (251)
322 cd05741 Ig_CEACAM_D1_like Firs 93.8 0.18 3.8E-06 38.7 5.7 27 184-210 56-82 (92)
323 cd05755 Ig2_ICAM-1_like Second 93.8 0.2 4.3E-06 38.7 5.7 53 638-690 21-88 (100)
324 cd05879 Ig_P0 Immunoglobulin ( 93.7 0.26 5.7E-06 39.6 6.6 33 664-696 80-112 (116)
325 cd05902 Ig_Neurocan Immunoglob 93.7 0.13 2.9E-06 40.7 4.9 38 663-700 71-108 (110)
326 cd00098 IgC Immunoglobulin Con 93.7 0.16 3.4E-06 39.4 5.2 63 619-689 13-87 (95)
327 cd05775 Ig_SLAM-CD84_like_N N- 93.6 0.22 4.8E-06 38.6 5.9 39 181-219 57-96 (97)
328 cd05774 Ig_CEACAM_D1 First imm 93.5 0.14 3E-06 40.2 4.6 34 184-217 69-103 (105)
329 cd05881 Ig1_Necl-2 First (N-te 93.4 0.3 6.6E-06 37.4 6.1 34 173-206 49-83 (95)
330 cd05884 Ig2_Necl-3 Second immu 93.3 0.22 4.7E-06 37.2 5.1 53 638-690 4-72 (83)
331 COG4733 Phage-related protein, 93.1 1 2.2E-05 48.0 11.2 47 89-136 639-685 (952)
332 cd00096 Ig Immunoglobulin doma 93.1 0.32 7E-06 34.5 6.0 43 645-687 14-66 (74)
333 cd05880 Ig_EVA1 Immunoglobulin 92.3 0.39 8.4E-06 38.7 5.8 27 663-689 78-104 (115)
334 cd05772 IgC_SIRP Signal-regula 92.3 2.3 5E-05 33.8 10.0 33 437-469 17-51 (111)
335 KOG4806|consensus 92.2 10 0.00022 36.1 15.1 33 570-602 410-442 (454)
336 cd04981 IgV_H Immunoglobulin ( 92.1 0.93 2E-05 36.6 7.7 70 434-503 5-97 (117)
337 PF08205 C2-set_2: CD80-like C 92.0 1.4 3.1E-05 33.4 8.4 67 441-507 14-86 (89)
338 cd07698 IgC_MHC_I_alpha3 Class 91.8 1.4 3.1E-05 33.8 8.1 65 441-505 14-83 (93)
339 cd05846 Ig1_MRC-OX-2_like Firs 91.8 0.51 1.1E-05 36.6 5.7 37 183-219 59-96 (97)
340 KOG4228|consensus 91.6 1 2.3E-05 49.8 9.5 216 52-307 22-242 (1087)
341 cd05766 IgC_MHC_II_beta Class 91.4 2.3 4.9E-05 32.7 8.8 30 440-469 13-44 (94)
342 cd05889 Ig1_DNAM-1_like First 91.3 2.4 5.2E-05 32.6 8.8 35 663-698 59-93 (96)
343 PF09067 EpoR_lig-bind: Erythr 90.6 2 4.3E-05 33.6 7.8 81 324-407 7-95 (104)
344 smart00407 IGc1 Immunoglobulin 90.4 1 2.3E-05 32.8 5.9 43 645-687 17-71 (75)
345 cd05889 Ig1_DNAM-1_like First 90.0 0.82 1.8E-05 35.2 5.2 34 184-217 59-93 (96)
346 cd00099 IgV Immunoglobulin var 89.9 0.46 9.9E-06 37.5 4.0 27 183-209 65-91 (105)
347 cd05715 Ig_P0-like Immunoglobu 89.9 1.1 2.3E-05 36.2 6.2 27 663-689 79-105 (116)
348 smart00406 IGv Immunoglobulin 89.4 2.1 4.6E-05 31.5 7.1 29 472-500 50-80 (81)
349 PF07686 V-set: Immunoglobulin 89.0 0.78 1.7E-05 36.8 4.9 26 182-207 76-101 (114)
350 PF09067 EpoR_lig-bind: Erythr 88.9 2 4.4E-05 33.5 6.7 81 222-306 7-95 (104)
351 KOG4228|consensus 88.3 6.5 0.00014 43.9 12.1 104 199-312 1-104 (1087)
352 cd07703 Ig2_Nectin-2_like Seco 88.1 4.6 9.9E-05 31.0 8.1 67 443-512 17-89 (95)
353 PHA02633 hypothetical protein; 88.0 1.8 3.9E-05 29.4 4.9 41 183-223 16-56 (63)
354 smart00407 IGc1 Immunoglobulin 87.9 7.8 0.00017 28.1 9.1 24 444-467 2-27 (75)
355 cd04984 IgV_L_lambda Immunoglo 87.7 0.81 1.8E-05 35.6 4.0 33 175-207 53-85 (98)
356 PHA02987 Ig domain OX-2-like p 87.2 2.3 4.9E-05 36.8 6.4 49 175-223 74-125 (189)
357 KOG4806|consensus 87.0 29 0.00063 33.2 17.3 123 574-700 288-446 (454)
358 PHA03376 BARF1; Provisional 86.9 4.8 0.0001 34.8 8.0 44 174-217 76-119 (221)
359 cd05719 Ig2_PVR_like Second im 86.8 7.4 0.00016 29.9 8.6 63 443-508 17-85 (95)
360 cd07692 Ig_CD3_epsilon Immunog 86.7 1.5 3.2E-05 30.4 4.2 51 440-504 6-56 (65)
361 PF11465 Receptor_2B4: Natural 86.7 4.3 9.4E-05 31.3 7.0 36 664-699 71-107 (108)
362 cd04980 IgV_L_kappa Immunoglob 86.5 0.93 2E-05 35.9 3.8 33 175-207 61-93 (106)
363 PF11465 Receptor_2B4: Natural 86.4 3.7 8E-05 31.7 6.4 38 182-219 68-106 (108)
364 PF02010 REJ: REJ domain; Int 86.3 1 2.2E-05 46.9 5.0 123 382-508 148-288 (440)
365 cd05770 IgC_beta2m Class I maj 86.3 2 4.3E-05 32.8 5.2 47 638-685 20-81 (93)
366 cd05899 IgV_TCR_beta Immunoglo 86.2 1.2 2.7E-05 35.4 4.4 26 183-208 70-95 (110)
367 cd05767 IgC_MHC_II_alpha Class 85.8 1.9 4.1E-05 33.1 4.9 14 645-658 33-46 (94)
368 cd07698 IgC_MHC_I_alpha3 Class 85.8 2.4 5.2E-05 32.5 5.6 61 620-688 15-84 (93)
369 cd07699 IgC_L Immunoglobulin C 85.4 1.9 4.1E-05 33.6 4.8 29 440-468 16-46 (100)
370 PF07495 Y_Y_Y: Y_Y_Y domain; 85.0 5.6 0.00012 27.9 6.8 39 98-138 18-56 (66)
371 cd05766 IgC_MHC_II_beta Class 84.8 2.5 5.5E-05 32.4 5.2 14 645-658 32-45 (94)
372 cd05712 Ig_Siglec_N Immunoglob 84.6 1.6 3.4E-05 35.4 4.3 27 181-207 76-102 (119)
373 smart00406 IGv Immunoglobulin 84.2 1.1 2.4E-05 33.0 3.1 22 182-203 59-80 (81)
374 PHA02633 hypothetical protein; 83.8 3.3 7.1E-05 28.2 4.6 40 663-702 17-56 (63)
375 cd04982 IgV_TCR_gamma Immunogl 82.8 1.8 3.9E-05 34.9 4.0 33 174-206 64-98 (116)
376 PF08205 C2-set_2: CD80-like C 82.1 7.1 0.00015 29.5 6.8 52 638-689 19-86 (89)
377 PF07654 C1-set: Immunoglobuli 81.9 14 0.0003 27.5 8.2 31 440-470 7-39 (83)
378 PF07654 C1-set: Immunoglobuli 81.4 2.7 5.9E-05 31.3 4.2 41 645-688 26-78 (83)
379 cd05720 Ig_CD8_alpha Immunoglo 80.7 2.3 4.9E-05 33.5 3.7 33 174-206 58-90 (104)
380 cd05772 IgC_SIRP Signal-regula 80.6 10 0.00023 30.1 7.4 45 645-690 39-95 (111)
381 cd05721 IgV_CTLA-4 Immunoglobu 80.6 14 0.00031 29.3 7.8 35 648-682 58-92 (115)
382 PF09240 IL6Ra-bind: Interleuk 79.7 26 0.00057 27.1 9.3 78 328-407 2-86 (99)
383 cd07704 Ig2_Nectin-3-4_like Se 79.6 20 0.00044 27.6 8.3 29 436-464 11-41 (97)
384 cd05767 IgC_MHC_II_alpha Class 78.5 15 0.00032 28.2 7.3 29 441-469 15-45 (94)
385 cd07689 Ig2_VCAM-1 Second immu 78.4 12 0.00025 28.8 6.5 65 438-502 12-83 (99)
386 cd05716 Ig_pIgR Immunoglobulin 78.4 4.3 9.2E-05 31.4 4.6 27 182-208 61-87 (98)
387 cd07697 IgC_TCR_gamma T cell r 78.3 6 0.00013 30.4 5.2 29 440-468 15-45 (96)
388 cd05770 IgC_beta2m Class I maj 78.3 10 0.00022 29.0 6.4 29 440-468 14-44 (93)
389 cd07691 Ig_CD3_gamma_delta Imm 78.2 18 0.00038 25.5 6.7 49 441-503 6-54 (69)
390 PF08204 V-set_CD47: CD47 immu 77.9 3.3 7.1E-05 33.6 3.7 35 664-699 86-120 (130)
391 cd07699 IgC_L Immunoglobulin C 77.6 5.5 0.00012 31.0 4.9 31 620-658 18-48 (100)
392 cd07697 IgC_TCR_gamma T cell r 76.9 5.4 0.00012 30.7 4.6 14 645-658 34-47 (96)
393 cd07706 IgV_TCR_delta Immunogl 76.8 3.3 7.2E-05 33.4 3.7 33 174-206 59-93 (116)
394 cd05768 IgC_CH4 CH4 domain (fo 76.6 5.2 0.00011 31.3 4.5 29 440-468 15-45 (102)
395 cd05847 IgC_CH2_IgE CH2 domain 76.0 7.2 0.00016 29.9 5.1 62 619-688 14-87 (94)
396 cd07694 Ig2_CD4 Second immunog 75.9 10 0.00022 28.3 5.4 54 645-698 32-85 (88)
397 PHA02914 Immunoglobulin-like d 75.7 45 0.00098 32.7 11.0 121 434-559 272-420 (500)
398 cd07703 Ig2_Nectin-2_like Seco 75.6 7.8 0.00017 29.8 5.1 60 638-697 20-92 (95)
399 PF07495 Y_Y_Y: Y_Y_Y domain; 74.4 12 0.00026 26.2 5.6 36 369-408 19-54 (66)
400 KOG1225|consensus 73.5 12 0.00027 38.8 7.4 111 277-399 414-524 (525)
401 PHA03042 CD47-like protein; Pr 73.4 15 0.00033 33.9 7.0 54 645-699 52-105 (286)
402 cd05719 Ig2_PVR_like Second im 71.6 17 0.00036 28.0 6.1 56 638-693 20-88 (95)
403 cd05769 IgC_TCR_beta T cell re 71.2 11 0.00024 30.2 5.2 30 440-469 17-48 (115)
404 PF08329 ChitinaseA_N: Chitina 69.2 28 0.0006 28.6 7.0 53 647-700 56-109 (133)
405 cd07700 IgV_CD8_beta Immunoglo 69.1 6.4 0.00014 31.1 3.5 25 182-206 69-93 (107)
406 PLN02533 probable purple acid 68.5 28 0.00061 35.9 8.8 71 222-299 40-121 (427)
407 cd05769 IgC_TCR_beta T cell re 68.5 7.8 0.00017 31.1 3.8 14 645-658 36-49 (115)
408 PLN02533 probable purple acid 67.9 46 0.00099 34.3 10.2 43 662-712 101-143 (427)
409 cd07696 IgC_CH3 CH3 domain (th 65.5 60 0.0013 25.0 8.5 29 438-466 11-42 (96)
410 cd05847 IgC_CH2_IgE CH2 domain 64.7 45 0.00097 25.5 7.2 27 441-467 14-42 (94)
411 PF08329 ChitinaseA_N: Chitina 64.3 47 0.001 27.3 7.4 70 65-141 34-103 (133)
412 PF11141 DUF2914: Protein of u 63.4 50 0.0011 23.3 7.3 54 645-698 8-65 (66)
413 PF02010 REJ: REJ domain; Int 61.5 12 0.00026 39.0 4.8 120 184-305 37-174 (440)
414 cd04981 IgV_H Immunoglobulin ( 61.1 12 0.00026 30.2 3.7 32 175-206 64-97 (117)
415 TIGR00868 hCaCC calcium-activa 61.0 3E+02 0.0064 31.4 24.4 82 222-306 755-854 (863)
416 PF09240 IL6Ra-bind: Interleuk 60.3 78 0.0017 24.5 8.4 72 64-137 8-88 (99)
417 KOG4597|consensus 60.1 34 0.00074 34.4 7.0 83 435-517 205-292 (560)
418 PF07354 Sp38: Zona-pellucida- 57.6 19 0.00041 33.2 4.6 47 455-504 12-59 (271)
419 PHA03042 CD47-like protein; Pr 57.0 1.1E+02 0.0024 28.5 9.2 75 442-526 32-111 (286)
420 PF13750 Big_3_3: Bacterial Ig 56.4 1.3E+02 0.0028 25.8 13.8 26 486-511 116-141 (158)
421 cd04986 IgC_CH2 CH2 domain (se 56.3 29 0.00063 26.9 4.9 27 440-466 18-47 (99)
422 PF14292 SusE: SusE outer memb 55.1 1.1E+02 0.0024 24.7 8.9 67 63-129 39-120 (122)
423 PF06832 BiPBP_C: Penicillin-B 54.8 22 0.00048 26.9 4.0 43 645-692 44-86 (89)
424 cd05768 IgC_CH4 CH4 domain (fo 52.7 25 0.00054 27.5 4.1 30 620-657 17-46 (102)
425 TIGR00868 hCaCC calcium-activa 48.3 4.7E+02 0.01 29.9 21.6 83 324-407 755-854 (863)
426 cd05721 IgV_CTLA-4 Immunoglobu 47.8 1.4E+02 0.0031 23.8 8.0 66 436-501 8-93 (115)
427 cd04985 IgC_CH1 CH1 domain (fi 46.2 24 0.00052 27.1 3.0 28 619-654 16-43 (95)
428 PHA02982 hypothetical protein; 44.8 41 0.00089 29.7 4.4 72 174-262 89-160 (251)
429 KOG1948|consensus 43.7 5.2E+02 0.011 29.1 16.9 71 379-454 943-1013(1165)
430 KOG1225|consensus 43.2 1.3E+02 0.0027 31.7 8.4 156 56-298 367-524 (525)
431 KOG4597|consensus 42.5 36 0.00078 34.3 4.2 62 638-699 216-292 (560)
432 PF06328 Lep_receptor_Ig: Ig-l 38.5 1.7E+02 0.0038 22.1 7.4 61 437-499 14-79 (89)
433 cd07689 Ig2_VCAM-1 Second immu 38.4 78 0.0017 24.5 4.6 44 645-688 34-87 (99)
434 PF13754 Big_3_4: Bacterial Ig 37.6 97 0.0021 20.7 4.5 30 664-694 14-43 (54)
435 KOG1480|consensus 37.0 18 0.00039 38.8 1.4 70 436-508 139-209 (909)
436 PF07354 Sp38: Zona-pellucida- 36.9 37 0.0008 31.4 3.1 43 645-687 14-60 (271)
437 PF08204 V-set_CD47: CD47 immu 32.5 53 0.0011 26.9 3.1 36 183-219 84-119 (130)
438 PF13750 Big_3_3: Bacterial Ig 31.5 3.4E+02 0.0073 23.4 12.6 23 574-596 116-138 (158)
439 PHA02579 7 baseplate wedge sub 30.8 1.2E+02 0.0027 32.8 6.1 77 59-140 9-96 (1030)
440 PHA03270 envelope glycoprotein 29.8 6.1E+02 0.013 25.8 11.0 138 569-713 181-334 (466)
441 PHA03283 envelope glycoprotein 29.7 1.5E+02 0.0032 30.7 6.2 41 663-703 133-173 (542)
442 PF11141 DUF2914: Protein of u 25.8 2.4E+02 0.0053 19.8 7.9 57 457-516 8-65 (66)
443 PF11344 DUF3146: Protein of u 25.5 56 0.0012 23.3 1.8 14 576-589 66-79 (80)
444 PHA03283 envelope glycoprotein 24.5 2.8E+02 0.006 28.9 7.0 42 182-223 131-172 (542)
445 PF06832 BiPBP_C: Penicillin-B 24.4 3.1E+02 0.0067 20.6 7.5 54 445-510 33-86 (89)
446 PF00801 PKD: PKD domain; Int 24.2 2.6E+02 0.0056 19.6 7.0 59 438-508 8-67 (69)
447 PF05790 C2-set: Immunoglobuli 24.2 3E+02 0.0065 20.3 6.2 36 645-684 28-63 (80)
448 PHA03271 envelope glycoprotein 24.0 7.7E+02 0.017 25.0 13.0 26 570-595 207-232 (490)
449 KOG1480|consensus 23.9 39 0.00084 36.5 1.2 46 645-690 161-209 (909)
450 PF14292 SusE: SusE outer memb 23.3 4E+02 0.0087 21.5 9.1 37 331-367 37-73 (122)
451 PF09423 PhoD: PhoD-like phosp 23.2 2.7E+02 0.0059 29.1 7.3 42 660-704 60-101 (453)
452 cd02848 Chitinase_N_term Chiti 22.7 3.9E+02 0.0084 21.1 8.1 68 66-139 31-98 (106)
453 smart00089 PKD Repeats in poly 20.1 3.4E+02 0.0074 19.5 8.8 24 493-516 55-78 (79)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4.2e-41 Score=347.39 Aligned_cols=632 Identities=19% Similarity=0.221 Sum_probs=411.3
Q ss_pred CcEEEEEeCCeEEEEeeCCCCCCCcceeeEEEEEccCCCCC-CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcC
Q psy7040 18 PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDRGLDPE-GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP 96 (716)
Q Consensus 18 ~l~~~~~~~~~~~~~W~~p~~~~~~~~~~y~~~~~~~~~p~-~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~ 96 (716)
.|+|.+++....-..=|-..+..|...-.+.+.+...+.=. .+-.+.......+.+..+. .|.|...|+......
T Consensus 295 vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a----~g~P~p~v~WlkNg~ 370 (1051)
T KOG3513|consen 295 VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKA----SGKPNPTVKWLKNGE 370 (1051)
T ss_pred EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEe----cCCCCCceEEeeCCe
Confidence 45665555555555444444555544444444444422111 1111222233344444443 234444444322111
Q ss_pred C--CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCCCc-------c--cccccccceec
Q psy7040 97 E--TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK-------Y--TSVSSLDSHKR 165 (716)
Q Consensus 97 ~--~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~-------~--~~~~~~~~~~~ 165 (716)
. ...-..........+.|.+|++.+.+.|+|.|.|.+|....+..+..+...+.+.. . ..-...+.|++
T Consensus 371 pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~ 450 (1051)
T KOG3513|consen 371 PLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP 450 (1051)
T ss_pred ecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc
Confidence 0 00110001112368999999999999999999999997766544433333333332 1 12223466888
Q ss_pred ccCCC-------C-----CCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEe
Q psy7040 166 SNQPC-------G-----SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS 233 (716)
Q Consensus 166 ~~~p~-------G-----~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~ 233 (716)
...|. | +++|+.+.. +++|.|.+++..|+|.|+|.|.|..|.....+.|.|++++.....|....
T Consensus 451 ~asP~p~~~W~k~~~~~~~~~r~~i~e---dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~ 527 (1051)
T KOG3513|consen 451 FASPKPKVSWLKGGEKLLQSGRIRILE---DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTD 527 (1051)
T ss_pred CCCCcceEEEEcCCcccccCceEEECC---CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhh
Confidence 88887 2 567777764 78899999999999999999999999999999999999987666666666
Q ss_pred EEeCCeEEEEEECCCCCCCCccceEEEEEEe------CCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCC
Q psy7040 234 NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD------EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS 307 (716)
Q Consensus 234 ~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~------~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~ 307 (716)
...+.++.|.|+...+..- ...|.+.... ........... ..+ ..++|.++...+.+.|.|.|....-.
T Consensus 528 v~~g~~v~l~Ce~shD~~l--d~~f~W~~nG~~id~~~~~~~~~~~~~-~~~-g~L~i~nv~l~~~G~Y~C~aqT~~Ds- 602 (1051)
T KOG3513|consen 528 VKVGESVTLTCEASHDPSL--DITFTWKKNGRPIDFNPDGDHFEINDG-SDS-GRLTIANVSLEDSGKYTCVAQTALDS- 602 (1051)
T ss_pred hccCceEEEEeecccCCCc--ceEEEEEECCEEhhccCCCCceEEeCC-cCc-cceEEEeeccccCceEEEEEEEeecc-
Confidence 7778999999997543321 1222222110 01111222111 122 56999999999999999999884322
Q ss_pred CCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCC---eE
Q psy7040 308 EPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP---KG 384 (716)
Q Consensus 308 ~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~---~~ 384 (716)
..... .+.++ .+|++|.++.+....+++++|+|.+.. +++++|..|.|+.+......|.....++.... +.
T Consensus 603 ~s~~A--~l~V~---gpPgpP~~v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa 676 (1051)
T KOG3513|consen 603 ASARA--DLLVR---GPPGPPPDVHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESA 676 (1051)
T ss_pred hhccc--ceEEe---cCCCCCCceeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECCCcccCccce
Confidence 12222 23444 678889999999999999999999944 45568999999999998899998886655544 67
Q ss_pred EecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-------
Q psy7040 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT------- 457 (716)
Q Consensus 385 ~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~------- 457 (716)
++.+|.|...|+|||+|+|..|.|++|.++....+.. .+|.. .+.++....|+.-.|.+ .|+|.+.
T Consensus 677 ~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~e--a~P~~---~P~nv~g~g~~~~eLvI--tW~Pl~~~~qNG~g 749 (1051)
T KOG3513|consen 677 TVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPE--AAPSV---NPSNVKGGGGSPTELVI--TWEPLPEEEQNGPG 749 (1051)
T ss_pred eEEccCCCcceEEEEEEEcccccCCCCCCccceecCC--CCCcc---CCccccccCCCCceEEE--EeccCCHHHccCCC
Confidence 7899999999999999999999999999988776533 35553 35677777777666655 7787763
Q ss_pred ----EEEEeCCeEeccCCcEEEEeCCCeEEEEE--CCCCCCCceeEEEEEEcCCCceeeEEEEEEE--------------
Q psy7040 458 ----KEWLCNDITIISKDRFKIVNDDKSTKLKV--FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-------------- 517 (716)
Q Consensus 458 ----~~W~~~~~~~~~~~~~~~~~~~~~~~l~i--~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-------------- 517 (716)
+.|...+....-.. .+........+.+ ....+...|.+.|+|.|..|.++.+..+.+.
T Consensus 750 fgY~Vswr~~g~~~~W~~--~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~ 827 (1051)
T KOG3513|consen 750 FGYRVSWRPQGADKEWKE--VIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLS 827 (1051)
T ss_pred ceEEEEEEeCCCCcccce--eEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccce
Confidence 66776665421111 1111111234444 4456689999999999999999877666555
Q ss_pred -------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEE
Q psy7040 518 -------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590 (716)
Q Consensus 518 -------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~ 590 (716)
.+.|+|++|..++|. +++|+|+|.......-...-.+ .....+...|.||++++.|.|.|+|+
T Consensus 828 ~~~~s~s~~~v~W~~~~~~nG~-l~gY~v~Y~~~~~~~~~~~~~~---------i~~~~~~~~ltgL~~~T~Y~~~vrA~ 897 (1051)
T KOG3513|consen 828 AKPLSSSEVNLSWKPPLWDNGK-LTGYEVKYWKINEKEGSLSRVQ---------IAGNRTSWRLTGLEPNTKYRFYVRAY 897 (1051)
T ss_pred eecccCceEEEEecCcCccCCc-cceeEEEEEEcCCCccccccee---------ecCCcceEeeeCCCCCceEEEEEEEe
Confidence 899999999888854 9999999998765210011111 11234899999999999999999999
Q ss_pred cCCCCCccceeeec---cCCCCC----Ccc--ceeeccceeEEEEE----------EeeEEEEeeeeccCceeeEEEEeC
Q psy7040 591 NSQGKDQVFIEVVV---TDKPSA----PEG--PIQWLLTLTDVTWE----------ISNYLQELHSSLMPISLESQYLMN 651 (716)
Q Consensus 591 n~~G~~~~s~~~~v---~~~p~~----~~~--~~~~~~~~v~l~w~----------i~~y~v~~~~~~~~~~~~~~W~~~ 651 (716)
|.+|.|+.+....+ +.+|+. |.. +.......+.|.|. +.||.|.++...- .
T Consensus 898 nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV~~~~~~~----------~ 967 (1051)
T KOG3513|consen 898 TSAGGGPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSAFENESEVGGYKVLYREDLQ----------N 967 (1051)
T ss_pred cCCCCCCCccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEEEeecccCcceEEEEeeccc----------C
Confidence 99999999988884 445553 221 34456778899998 7777776554211 1
Q ss_pred CeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
...+..............++ .+.|.+++.+.+..|.+..+....+
T Consensus 968 ~~~~~~t~~~~~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~ 1012 (1051)
T KOG3513|consen 968 DIEIILTMKLDAEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISI 1012 (1051)
T ss_pred CceeEecccccccccCcccc--CCcceeEeccccCCCCCCcCCcccc
Confidence 11111110001111233333 2788888889998888855554443
No 2
>KOG4221|consensus
Probab=100.00 E-value=1.4e-38 Score=326.28 Aligned_cols=525 Identities=18% Similarity=0.236 Sum_probs=365.8
Q ss_pred ceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc--cCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138 (716)
Q Consensus 61 l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~ 138 (716)
+.+..+....+.++|.+|. ..+.++..|.+.|...... |..... ......++.+|.+.+.|.|+|+|.|..|.+.+
T Consensus 434 lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~~-rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~s 511 (1381)
T KOG4221|consen 434 LVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGDV-RERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGES 511 (1381)
T ss_pred eecccccceeEEEeecCcc-ccCCCcceEEEEEecCCch-hhhheeccCCceEEEeeecccceeEEEEEeccCcccCCcc
Confidence 5555777889999999888 5556699999998765543 322222 22378999999999999999999999999988
Q ss_pred ccccceEEecC-CCCcccccccccceecccCCC--C-------------CCceEEEEecCCccEEEEeccccCcceEEEE
Q psy7040 139 LETFSSIIARD-PYSKYTSVSSLDSHKRSNQPC--G-------------SGMVRKVQHLDYNTKLGVRMAQRADAGFYTV 202 (716)
Q Consensus 139 s~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~p~--G-------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c 202 (716)
+..+...+..+ |....+...+..+|.+.|.+| | .+....+....+...++|.+|.+.++|.|+|
T Consensus 512 S~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~v 591 (1381)
T KOG4221|consen 512 SAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRV 591 (1381)
T ss_pred CCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEE
Confidence 87766655543 333445556667899999999 2 1122333334567899999999999999999
Q ss_pred EEEeCCCCceeEEEEEEe---cCCCCCCCCeEEeEEeCCeEEEEEECCCCC--CCCccceEEEEEEeCCCCCeEEccccC
Q psy7040 203 TAENINGKDSVEVEVIVL---DKPSPPGGPLKVSNVHAEGVTLDWKVPDDD--GGQPIEKYVVDKMDEATGRWTPAGETE 277 (716)
Q Consensus 203 ~a~n~~g~~~~~~~~~v~---~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~ 277 (716)
.|.|..|....+..+.|. +.|++|.+.+++.....+++++.|.+|... +| .+.+|.|.++.........-....
T Consensus 592 vA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng-~itgYkIRy~~~~~~~~~~~t~v~ 670 (1381)
T KOG4221|consen 592 VAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNG-QITGYKIRYRKLSREDEVNETVVK 670 (1381)
T ss_pred EEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccc-eEEEEEEEecccCcccccceeecc
Confidence 999999997766666654 567666655899999999999999987643 34 588999999866544333222233
Q ss_pred cccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC--CCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCcc
Q psy7040 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN--PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP 355 (716)
Q Consensus 278 ~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~--~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~ 355 (716)
++...+.+.+|+|++.|.|++.|.+..|.+..+....+-+... ....|.+|..+.+. ....+|.+.|.||...+. .
T Consensus 671 ~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~~-~ 748 (1381)
T KOG4221|consen 671 GNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPNI-V 748 (1381)
T ss_pred cchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChhh-h
Confidence 4678899999999999999999999999998887754443332 22345566655554 456789999999776533 5
Q ss_pred ceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccccc
Q psy7040 356 IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD 435 (716)
Q Consensus 356 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~ 435 (716)
+.+|+|.|+.............+.....|.|..|.++..|.++++|+|..|+|.+......+.....+..|. .......
T Consensus 749 vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v-~tp~~pp 827 (1381)
T KOG4221|consen 749 VRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPV-DTPMLPP 827 (1381)
T ss_pred hcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcC-CCCCCCc
Confidence 889999998655444444555677888999999999999999999999999998765544443211101110 0011112
Q ss_pred EEEecCCeEEEEEEEeccC-------CC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc---
Q psy7040 436 IKVRAGSNFEFDINVIGEP-------IP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN--- 503 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p-------~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n--- 503 (716)
+.+++...-...+.+.|.. .. .++|..-+.. ....+. .......+..+.++++.+.|++.+.+.-
T Consensus 828 vgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~--~~~~~~-~~~~t~ls~~v~glkpnt~yEfav~~~~~~~ 904 (1381)
T KOG4221|consen 828 VGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIR--NGTLYR-YDNSTDLSYLVGGLKPNTPYEFAVMVVKRNR 904 (1381)
T ss_pred ccccccccccceEEEEEecCCCccccceEEEEEEeecccc--cceeEE-EecccccceeccCcCcCChhhhhhhhhhccC
Confidence 2333332223333334433 12 2444322222 222233 2223456789999999999999887764
Q ss_pred CCCceeeEEEEEEE--------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeee
Q psy7040 504 SWGTDKGTAKVTVL--------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563 (716)
Q Consensus 504 ~~g~~~~s~~~~v~--------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~ 563 (716)
..+..+.+....+. .+.+.|.+|...+|. |++|.++|..... .+...|......-.
T Consensus 905 r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e~nG~-I~~Yii~Ys~~~n-~~~~dWt~~t~~g~-- 980 (1381)
T KOG4221|consen 905 RESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTEPNGE-ITEYIIYYSTDGN-TPEHDWTIETTAGA-- 980 (1381)
T ss_pred cCCcccceeeeeecccCCCCCChhceecccCCCCccccccCCCcCCCCc-eeeEEEEEecCCC-Cchhhceeeecccc--
Confidence 22222333333333 789999999998887 9999999997765 33467765433111
Q ss_pred ccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603 (716)
Q Consensus 564 ~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 603 (716)
..++.+.+|.+++.|.|+++|.|..|.|+.+..+.
T Consensus 981 -----~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~ 1015 (1381)
T KOG4221|consen 981 -----ELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVL 1015 (1381)
T ss_pred -----hhhhccCCCCCCCceEEEEEeeccCCCCcccccee
Confidence 27888999999999999999999999998777665
No 3
>KOG4221|consensus
Probab=100.00 E-value=2.7e-37 Score=316.87 Aligned_cols=595 Identities=17% Similarity=0.206 Sum_probs=411.1
Q ss_pred CCeEEEEecCCCCCCCCccceEEEEEEcCC--CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceE
Q psy7040 68 KDGCTLKWNKPKDDGGEPLEGYLVEKYDPE--TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSI 145 (716)
Q Consensus 68 ~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~--~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~ 145 (716)
..+.+++|+++. .|.|+..|++.....- ...|..+... ..+.|.++-..+.+.|+|.|.|+.|..........+
T Consensus 341 ~e~~die~ec~~--~g~p~p~v~w~kNgd~~ipsdy~ki~~~--~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv 416 (1381)
T KOG4221|consen 341 HESMDIEFECPV--SGKPIPTVRWYKNGDRIIPSDYFKIVGG--GNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVV 416 (1381)
T ss_pred eeccceeEeCCC--CCCCcceEEEEecCcccCcccceEecCC--CCcEEEEEecccchhhhhhhccCcccccchhhheec
Confidence 348899999876 4457888877554221 2234333332 348888888888889999999999855433332222
Q ss_pred Ee----------cCCCCcccccccccceecccCCC----CCCceEEE-------------EecCCccEEEEeccccCcce
Q psy7040 146 IA----------RDPYSKYTSVSSLDSHKRSNQPC----GSGMVRKV-------------QHLDYNTKLGVRMAQRADAG 198 (716)
Q Consensus 146 ~~----------~~p~~~~~~~~~~~~~~~~~~p~----G~~~~~~~-------------~~~~~~~~l~i~~l~~~~~g 198 (716)
.. ..|..+..........+..|.+| |+-..+.+ ...+......+.+|++...|
T Consensus 417 ~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y 496 (1381)
T KOG4221|consen 417 PQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMY 496 (1381)
T ss_pred cCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeE
Confidence 11 11222233444445578888877 32222211 11222377899999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCc
Q psy7040 199 FYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278 (716)
Q Consensus 199 ~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~ 278 (716)
.++|.|.|..|....+..|.|..+|++|.. +.+......++.+.|.+|...++ ++++|.+.+...+.+.|.....
T Consensus 497 ~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~ats~~ti~v~WepP~~~n~-~I~~yk~~ys~~~~~~~~~~~~--- 571 (1381)
T KOG4221|consen 497 FFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYATSPTTILVTWEPPPFGNG-PITGYKLFYSEDDTGKELRVEN--- 571 (1381)
T ss_pred EEEEeccCcccCCccCCceEEecCCCCCcc-ccccccCcceEEEEecCCCCCCC-CceEEEEEEEcCCCCceEEEec---
Confidence 999999999999999999999999998887 88888999999999999886555 8999999998887777776654
Q ss_pred ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCC-CCcEEEeeeCCeEEEEecCCC-CCCCccc
Q psy7040 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPE-QNGGSPI 356 (716)
Q Consensus 279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p-~~~~~~~~~~~~i~l~W~~p~-~~~~~~i 356 (716)
+...++|.+|.++++|.|+|.|.|..|.+..+....+.+.. +.|++| .|+++...+.++|.|.|.+|. ...++.+
T Consensus 572 n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls---d~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~i 648 (1381)
T KOG4221|consen 572 NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS---DVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQI 648 (1381)
T ss_pred CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc---CCCCCCCcceEEEecCCCeEEEEccCCCcccccceE
Confidence 46899999999999999999999999998877775555444 778755 559999999999999999864 3445679
Q ss_pred eEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccE
Q psy7040 357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI 436 (716)
Q Consensus 357 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~ 436 (716)
.+|+|+|+..............++...+.+.+|+|++.|.|+|.|.+..|.|++|++....+.......+. ...+..+
T Consensus 649 tgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~v--p~~ps~l 726 (1381)
T KOG4221|consen 649 TGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERV--PGKPSEL 726 (1381)
T ss_pred EEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccC--CCCCcee
Confidence 99999998665344333444456788899999999999999999999999999998876665543322211 1223344
Q ss_pred EEecCCeEEEEEEEeccCCCe---------EEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 437 KVRAGSNFEFDINVIGEPIPT---------KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~p~~~---------~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
.+..|. -.+.+.|.|.+. +-|. .+..+. +.-.+..+.....+.|..|.+...|.+++.|+|..|.
T Consensus 727 ~~~~g~---~si~vsW~Pp~~~~~~vrgY~ig~r-~g~~~p--~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gd 800 (1381)
T KOG4221|consen 727 HVHPGS---NSIVVSWTPPPHPNIVVRGYKIGYR-PGSGIP--DTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGD 800 (1381)
T ss_pred eeccCc---eeEEEEeCCCCChhhhhcceEEeee-cccCCC--CCccEEecceeeEEEEEecccCceEEEEEEEeccCCC
Confidence 555553 345567888774 3343 233322 2334555666778999999999999999999999998
Q ss_pred eeeEEEEEEE----------------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccce
Q psy7040 508 DKGTAKVTVL----------------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK 559 (716)
Q Consensus 508 ~~~s~~~~v~----------------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~ 559 (716)
+........+ +|.+.|....+. -.+...|.+.|...+...-...|+.+..
T Consensus 801 G~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~-t~~~~~yTVr~~~~gi~~~~~~~~~~~t- 878 (1381)
T KOG4221|consen 801 GNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQ-TTDNRIYTVRWSLTGIRNGTLYRYDNST- 878 (1381)
T ss_pred CcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCc-cccceEEEEEEeecccccceeEEEeccc-
Confidence 7544332222 899999874222 2346778888863321000023322221
Q ss_pred eeeeccccceeEEEEcCCCCCCeEEEEEEEEcCC-CCCccceeee--c-cCCCCC-Cccceee---ccceeEEEEE----
Q psy7040 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ-GKDQVFIEVV--V-TDKPSA-PEGPIQW---LLTLTDVTWE---- 627 (716)
Q Consensus 560 ~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~-G~~~~s~~~~--v-~~~p~~-~~~~~~~---~~~~v~l~w~---- 627 (716)
...+.+.+|++++.|.|.+.+.-+. -.+.++..+. . ...|.. |..+... ..+++.+.|.
T Consensus 879 ---------~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e 949 (1381)
T KOG4221|consen 879 ---------DLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTE 949 (1381)
T ss_pred ---------ccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCCccccccCCCcC
Confidence 2788999999999999999877633 2455555454 2 223332 2222211 3589999999
Q ss_pred ----EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 628 ----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 628 ----i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
|++|.+.|..-.-. ..-.|..... .+...+..+.+|.+++.|-|+++|.|..|.+..+.-+...+.
T Consensus 950 ~nG~I~~Yii~Ys~~~n~--~~~dWt~~t~------~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~y~t~ 1019 (1381)
T KOG4221|consen 950 PNGEITEYIIYYSTDGNT--PEHDWTIETT------AGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVLYETS 1019 (1381)
T ss_pred CCCceeeEEEEEecCCCC--chhhceeeec------ccchhhhccCCCCCCCceEEEEEeeccCCCCccccceeeecc
Confidence 99999987551100 0334544211 112246779999999999999999999999976665555443
No 4
>KOG3513|consensus
Probab=100.00 E-value=1e-33 Score=293.05 Aligned_cols=505 Identities=20% Similarity=0.268 Sum_probs=359.2
Q ss_pred EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecc---cCCCeEEecCCCCCcEEEEEEEEEecCccCCCcc
Q psy7040 64 SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLE 140 (716)
Q Consensus 64 ~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~ 140 (716)
..+-...+.|..++ .++|-- .++|...+. .+..-.. ..+.++.|.+++..|.+.|.|.|.|..|......
T Consensus 437 ~a~~g~~v~i~C~~----~asP~p--~~~W~k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~ 509 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKP----FASPKP--KVSWLKGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTG 509 (1051)
T ss_pred EEEeCCeEEEeecc----CCCCcc--eEEEEcCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEE
Confidence 35566677787775 233333 344544433 2222111 1246899999999999999999999999765332
Q ss_pred ccceE----EecCCCCcc--cccccccceecccCCC----------C-------CCceEEEEecCCccEEEEeccccCcc
Q psy7040 141 TFSSI----IARDPYSKY--TSVSSLDSHKRSNQPC----------G-------SGMVRKVQHLDYNTKLGVRMAQRADA 197 (716)
Q Consensus 141 ~~~~~----~~~~p~~~~--~~~~~~~~~~~~~~p~----------G-------~~~~~~~~~~~~~~~l~i~~l~~~~~ 197 (716)
.+... ....|.... ......+.|+...++. | .+.++......+.+.|+|.+++..|.
T Consensus 510 ~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~ 589 (1051)
T KOG3513|consen 510 NLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDS 589 (1051)
T ss_pred EEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccC
Confidence 22111 011222221 1222345577776665 3 55666666655558899999999999
Q ss_pred eEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccC
Q psy7040 198 GFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277 (716)
Q Consensus 198 g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~ 277 (716)
|.|.|+|.....+.+..+.+.|.++|.||.. +.+..+..++++|+|.+.. ++.+||..|.|+.+......|......+
T Consensus 590 G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~-v~~~~i~~t~~~lsW~~g~-dn~SpI~~Y~iq~rt~~~~~W~~v~~vp 667 (1051)
T KOG3513|consen 590 GKYTCVAQTALDSASARADLLVRGPPGPPPD-VHVDDISDTTARLSWSPGS-DNNSPIEKYTIQFRTPFPGKWKAVTTVP 667 (1051)
T ss_pred ceEEEEEEEeecchhcccceEEecCCCCCCc-eeEeeeccceEEEEeecCC-CCCCCceEEeEEecCCCCCcceEeeECC
Confidence 9999999999999999999999999999998 9999999999999999644 4557899999999999899999888665
Q ss_pred cccc---eEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecC-CCCCC
Q psy7040 278 GPVT---GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTP-PEQNG 352 (716)
Q Consensus 278 ~~~~---~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~-p~~~~ 352 (716)
.... +.++.+|.|...|+|||.|.|..|.++++.++.... +..++|. .|.++.......+.+.|+|++ +....
T Consensus 668 ~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~r--T~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~q 745 (1051)
T KOG3513|consen 668 GNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVR--TPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQ 745 (1051)
T ss_pred CcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCcccee--cCCCCCccCCccccccCCCCceEEEEeccCCHHHc
Confidence 4444 677899999999999999999999999999995554 4556675 889999998899999999999 55445
Q ss_pred CccceEEEEEEeecCCC-ceEEEeeecCCCCeEEecC--CCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecC-CCCCcc
Q psy7040 353 GSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGKVLD--LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYI 428 (716)
Q Consensus 353 ~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~--l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~ 428 (716)
+++-.+|+|.|+..+.. .|............+.+.+ ..+.+.|+++|+|+|..|.|+.+........+.. +.+|.
T Consensus 746 NG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~- 824 (1051)
T KOG3513|consen 746 NGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPT- 824 (1051)
T ss_pred cCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCc-
Confidence 56889999999999877 8998887776667777765 5669999999999999999987776655554442 22222
Q ss_pred cccccccEEEecCCeEEEEEEEeccCCCe---------EE-EEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040 429 NRDQLSDIKVRAGSNFEFDINVIGEPIPT---------KE-WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498 (716)
Q Consensus 429 ~~~~~~~~~~~~g~~~~~~~~v~~~p~~~---------~~-W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~ 498 (716)
.+.+...+. -.+.+.|+++.. +. |..++.. .....+...++..+..|.+|++++.|.+.
T Consensus 825 ------~~~~~~~s~--s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~---~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~ 893 (1051)
T KOG3513|consen 825 ------KLSAKPLSS--SEVNLSWKPPLWDNGKLTGYEVKYWKINEKE---GSLSRVQIAGNRTSWRLTGLEPNTKYRFY 893 (1051)
T ss_pred ------cceeecccC--ceEEEEecCcCccCCccceeEEEEEEcCCCc---ccccceeecCCcceEeeeCCCCCceEEEE
Confidence 233333332 234446655532 33 3333332 22333444577889999999999999999
Q ss_pred EEEEcCCCceeeEEEEEEE------------------------EEEEEEeC--CCCCCCCceeeEEEEEEecCCCceeee
Q psy7040 499 LAVKNSWGTDKGTAKVTVL------------------------GCSLKWNP--PEDDGGAPIEYYMVEKMETDTGKVLIK 552 (716)
Q Consensus 499 ~~a~n~~g~~~~s~~~~v~------------------------~v~l~W~~--p~~~~~~~i~~y~v~~~~~~~~~~~~~ 552 (716)
++|+|.+|.++.+..+.++ .+.|.|.. +.. +...+.+|.|.++...... .
T Consensus 894 vrA~nsaG~Gp~s~~~~~tt~k~pPs~~~~~p~g~~~~~~~~~~~~l~w~~v~~~~-nes~v~gYkV~~~~~~~~~---~ 969 (1051)
T KOG3513|consen 894 VRAYTSAGGGPASSEENVTTKKAPPSQVDIAPPGNFIWKFSASILLLLWLLVSAFE-NESEVGGYKVLYREDLQND---I 969 (1051)
T ss_pred EEEecCCCCCCCccceeccccCCCCcccccCCCcceEEeeeeeEEEEEEeeEEEEe-ecccCcceEEEEeecccCC---c
Confidence 9999999988777666555 77888877 333 4555899999888765421 1
Q ss_pred EEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec
Q psy7040 553 WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604 (716)
Q Consensus 553 w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v 604 (716)
+........ .......++ +..|.+.+++.+..|.|..+....+
T Consensus 970 ~~~~t~~~~-------~~~~~p~~~--~~~y~i~v~~~~~ggdg~~s~~~~~ 1012 (1051)
T KOG3513|consen 970 EIILTMKLD-------AEFPEPSDL--DGKYDIKVRGYSPGGDGTISEEISI 1012 (1051)
T ss_pred eeEeccccc-------ccccCcccc--CCcceeEeccccCCCCCCcCCcccc
Confidence 111111000 011112222 2689999999999999877776654
No 5
>KOG4222|consensus
Probab=99.95 E-value=1.5e-25 Score=229.92 Aligned_cols=549 Identities=17% Similarity=0.193 Sum_probs=355.8
Q ss_pred cEEEEEEEEEecCccCCCccccceEEecC-CCCc-------ccccccccceecccCCC---------CCCce---EEEEe
Q psy7040 121 HEYKFRVKALNKEGESEPLETFSSIIARD-PYSK-------YTSVSSLDSHKRSNQPC---------GSGMV---RKVQH 180 (716)
Q Consensus 121 ~~y~~~v~a~~~~g~~~~s~~~~~~~~~~-p~~~-------~~~~~~~~~~~~~~~p~---------G~~~~---~~~~~ 180 (716)
+.+.|+|.|.|..|+...-.....++... -+.+ .......++|..-|..+ |.... ..+..
T Consensus 103 d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~ 182 (1281)
T KOG4222|consen 103 DHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA 182 (1281)
T ss_pred CCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence 78999999999999877666655554421 1211 22333445555544433 53222 22222
Q ss_pred cCCccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEE
Q psy7040 181 LDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259 (716)
Q Consensus 181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~ 259 (716)
.-..+.|.|.++.+.|+|.|.|+|.|..|. .+..+.++|..+|..-..+......-+..+.+.|..+.+ |.-.-.
T Consensus 183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~Gd----P~P~Vr 258 (1281)
T KOG4222|consen 183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGD----PQPTVR 258 (1281)
T ss_pred EecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCC----CCCcee
Confidence 334678999999999999999999999999 677899999999966554433333334447777775433 222222
Q ss_pred EEEEeC--CCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeee
Q psy7040 260 VDKMDE--ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD 337 (716)
Q Consensus 260 v~~~~~--~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~ 337 (716)
+.+... ...++. +. ....++.|....|.++..|.|.|.|..|.-+.+.. .++..+...-..|.+-.+ .-
T Consensus 259 wkk~~~~~P~~ry~-i~---~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~---ltV~apP~f~kkp~dq~v--~l 329 (1281)
T KOG4222|consen 259 WKKDDPSLPRSRYS-IL---DDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASAT---LTVQAPPSFGKKPRDQKV--AL 329 (1281)
T ss_pred eeccCCCCCcccee-ee---eccccccccccCCCcccceeeeccccccccccccc---eEEecCcccccccCcccc--cc
Confidence 222111 001111 11 22477888999999999999999999887655554 334322222223322221 12
Q ss_pred CCeEEEEecCCCCCCCccceEEEEEEeecCCCc---e------EEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI---W------EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 408 (716)
Q Consensus 338 ~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~---~------~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~ 408 (716)
+..+++.+..+..+ ...+ .|...+... | .....+. ....+++.++...+...|.|.+.+..|.+
T Consensus 330 g~~vt~pc~~~gnP----~Pav--fW~keg~q~llf~~~p~~~~~r~svs-~~g~L~it~v~~~d~g~Yvcq~~~~~~ss 402 (1281)
T KOG4222|consen 330 GGTVTFPCETLGNP----PPAV--FWLKEGSQDLLFSASPPSSNGRGSVS-PTGTLTITNVRQSDEGYYVCQTQTSAGSS 402 (1281)
T ss_pred CceEEeeeecCCCC----Ccce--EEeccCcceecccCCCCCcCccceec-CCCCcccccccccccceEeeccccccccc
Confidence 33455555442221 1111 111111000 0 0000111 12278899999999999999999998877
Q ss_pred CCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECC
Q psy7040 409 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 488 (716)
Q Consensus 409 ~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 488 (716)
........+.......||.+......+..+..+....+.|...+.|.+.+.|.+++..+...+...... ....+.+.+
T Consensus 403 ~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~--~~~~l~i~d 480 (1281)
T KOG4222|consen 403 LTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQ--EIGSLRIRD 480 (1281)
T ss_pred ccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCCccccee--eeceeeeee
Confidence 655444444333333577777667777777789999999999999999999999987765433222111 234899999
Q ss_pred CCCCCceeEEEEEEcCCCceeeEEEEEEE--------------------------------EEEEEEeCCCCCCCCceee
Q psy7040 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVL--------------------------------GCSLKWNPPEDDGGAPIEY 536 (716)
Q Consensus 489 l~~~~~~~y~~~a~n~~g~~~~s~~~~v~--------------------------------~v~l~W~~p~~~~~~~i~~ 536 (716)
+...|.|.|+|.|.+..|+...++.+.+. ++.|+|.+....+..++.+
T Consensus 481 l~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~ 560 (1281)
T KOG4222|consen 481 LKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASG 560 (1281)
T ss_pred eecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccch
Confidence 99999999999999999999999988877 8999999987767888999
Q ss_pred EEEEEEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee-ccCCCC------
Q psy7040 537 YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV-VTDKPS------ 609 (716)
Q Consensus 537 y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~-v~~~p~------ 609 (716)
|.+++-.... ...|........ .+.+.|.+|+|+..|.|.|+|.|..|-+.++.... +...|.
T Consensus 561 yiieafs~~~---~etw~~ta~~v~-------~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ 630 (1281)
T KOG4222|consen 561 YIIEAFSPDL---GETWQTTAGRVK-------TTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAG 630 (1281)
T ss_pred hHHHHhhhhh---cccccccccccc-------cceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhh
Confidence 9987664332 156766544332 38899999999999999999999999777766554 311111
Q ss_pred ---------------CCccceeeccceeEEEEE---------EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeE
Q psy7040 610 ---------------APEGPIQWLLTLTDVTWE---------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTK 665 (716)
Q Consensus 610 ---------------~~~~~~~~~~~~v~l~w~---------i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~ 665 (716)
.......++.+++.+.|. |.+|.|.|+.+.- +...|.-.+.... ....
T Consensus 631 ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~---~~a~~s~~~v~~~-----t~~s 702 (1281)
T KOG4222|consen 631 ADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGS---QLAQWSNAGVTVP-----TPES 702 (1281)
T ss_pred hhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCcc---ccccccccceecc-----CCcc
Confidence 111133456789999998 7888888877542 2334444443322 2268
Q ss_pred EEEccCCCCCcEEEEEEEEcCCCCc------eeeEEEEEecCCCCCCCCe
Q psy7040 666 ITIRPLQRSDTAQYTVTATNSQGKD------QVFIEVVVTDKPSAPEGPI 709 (716)
Q Consensus 666 ~~i~~l~~~~~y~y~~~a~n~~G~~------~~s~~l~v~~~p~~p~~p~ 709 (716)
+.+.+|.+.+.|++.+.-.-..|.. ....-++...+|.+|+.-+
T Consensus 703 ~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~ 752 (1281)
T KOG4222|consen 703 VVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGV 752 (1281)
T ss_pred eeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCc
Confidence 8999999999999999877775554 2223356667788776553
No 6
>KOG4222|consensus
Probab=99.90 E-value=1.7e-21 Score=200.46 Aligned_cols=549 Identities=17% Similarity=0.212 Sum_probs=331.4
Q ss_pred EEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe----cccCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040 63 VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV----GKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138 (716)
Q Consensus 63 ~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~ 138 (716)
+.....+.+.|+..+|.... .+. |.|..++...+... .......+.|.+.+..+.+.|.|.|.|-.|+-+.
T Consensus 141 ~~~a~ge~avlEcgpP~ghp-ept----vSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS 215 (1281)
T KOG4222|consen 141 VQAAVGEEAVLECGPPRGHP-EPT----VSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERES 215 (1281)
T ss_pred ccccccceeEEeccCCCCCC-CCc----ceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccccccc
Confidence 44555667777777775321 222 44555554444111 1122368999999999999999999999998777
Q ss_pred ccccceEEecCCCCcc-------cccccccceecccCCC---------C--CCceEEEEecCCccEEEEeccccCcceEE
Q psy7040 139 LETFSSIIARDPYSKY-------TSVSSLDSHKRSNQPC---------G--SGMVRKVQHLDYNTKLGVRMAQRADAGFY 200 (716)
Q Consensus 139 s~~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~p~---------G--~~~~~~~~~~~~~~~l~i~~l~~~~~g~y 200 (716)
..+...+..++-+... ........|++.++|. + ...++.+.. .+.+|.|...++.|+|.|
T Consensus 216 ~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~--d~qtl~i~r~tp~deg~y 293 (1281)
T KOG4222|consen 216 IPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD--DTQTLRIDRVTPTDEGTY 293 (1281)
T ss_pred ccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee--ccccccccccCCCcccce
Confidence 6666655554433221 1222445688888887 2 233444443 457899999999999999
Q ss_pred EEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeC------CCCCeEEcc
Q psy7040 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE------ATGRWTPAG 274 (716)
Q Consensus 201 ~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~------~~~~~~~~~ 274 (716)
.|.|.|..|.-...+.++|+.+|..-..+..-....+..+++.|..+..+ .+..++..+-... ....-....
T Consensus 294 ~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP--~PavfW~keg~q~llf~~~p~~~~~r~s 371 (1281)
T KOG4222|consen 294 VCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNP--PPAVFWLKEGSQDLLFSASPPSSNGRGS 371 (1281)
T ss_pred eeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCC--CcceEEeccCcceecccCCCCCcCccce
Confidence 99999999999999999999999776665444455677888888865432 2232222111000 000000000
Q ss_pred ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceE--------------------------------------
Q psy7040 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI-------------------------------------- 316 (716)
Q Consensus 275 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~-------------------------------------- 316 (716)
. .....+.|+++...+.+.|.|.+.+..|.+........+
T Consensus 372 -v-s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~ 449 (1281)
T KOG4222|consen 372 -V-SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPT 449 (1281)
T ss_pred -e-cCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCC
Confidence 0 011255555666555555655555544433221111000
Q ss_pred ---------------------------------------------------------------------EecCCCCCCCC
Q psy7040 317 ---------------------------------------------------------------------EAKNPFNQPGK 327 (716)
Q Consensus 317 ---------------------------------------------------------------------~~~~~~~~p~~ 327 (716)
....+...|++
T Consensus 450 p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~ 529 (1281)
T KOG4222|consen 450 PNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSP 529 (1281)
T ss_pred CCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCC
Confidence 01111246677
Q ss_pred CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC-CCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY-SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406 (716)
Q Consensus 328 p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g 406 (716)
|....+..+..++++|+|.+....+..++.+|.+++...+ ...|..... ....+.+.|.+|+|+..|.|.|+|.|..|
T Consensus 530 p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~-~v~~t~~~I~gL~P~~sylf~vRa~n~~G 608 (1281)
T KOG4222|consen 530 PGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAG-RVKTTTYAIRGLKPNLSYLFLVRAENEQG 608 (1281)
T ss_pred CCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhccccccccc-ccccceeeecCcCccceeeeeeecccccc
Confidence 7778888899999999999966656778999999886554 344654433 34567899999999999999999999999
Q ss_pred CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEE
Q psy7040 407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 486 (716)
Q Consensus 407 ~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i 486 (716)
-+.++..+..+...+.. +...... ..... ..+ . +..+.+
T Consensus 609 is~Ps~~S~~vrta~a~-~~~a~ad-~~k~~---------------------------~~l--s----------~~l~~l 647 (1281)
T KOG4222|consen 609 ISDPSTSSDPVRTAPAD-AAAAGAD-HQKVQ---------------------------REL--S----------NELLRL 647 (1281)
T ss_pred ccCCcccCCccccCCCC-hhhhhhh-HHHHH---------------------------Hhh--c----------ccceee
Confidence 88877766555442211 0000000 00000 000 0 001111
Q ss_pred CCCCCCCceeEEEEEEcCCCceeeEEEEEEEEEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceeeeeccc
Q psy7040 487 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNV 566 (716)
Q Consensus 487 ~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~~ 566 (716)
.++. .+...++.+.|..+...+...|.+|+|.|+.... ....|...+.....
T Consensus 648 ~~~~----------------------~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~--~~a~~s~~~v~~~t---- 699 (1281)
T KOG4222|consen 648 SNPN----------------------VLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGS--QLAQWSNAGVTVPT---- 699 (1281)
T ss_pred cccc----------------------ccchhheeeeeeeecccCcccccceEEEeccCcc--ccccccccceeccC----
Confidence 1100 0111189999998876556679999999997764 12455444433322
Q ss_pred cceeEEEEcCCCCCCeEEEEEEEEcCCC---CCccceeeec---cCCCCCCcc------ceeeccceeEEEEE-------
Q psy7040 567 DYFTKITIRPLQRSDTAQYTVTATNSQG---KDQVFIEVVV---TDKPSAPEG------PIQWLLTLTDVTWE------- 627 (716)
Q Consensus 567 ~~~~~~~i~~L~~~~~y~~~v~a~n~~G---~~~~s~~~~v---~~~p~~~~~------~~~~~~~~v~l~w~------- 627 (716)
...+.+.+|.+++.|+|.++-+...| .|.++....+ ..+|..|.. +...+.+...|+|.
T Consensus 700 --~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ 777 (1281)
T KOG4222|consen 700 --PESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQ 777 (1281)
T ss_pred --CcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCccccc
Confidence 27889999999999999999888755 3334443332 334433321 22334778899998
Q ss_pred ---EeeEEEEeeeeccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEEecCCC
Q psy7040 628 ---ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS 703 (716)
Q Consensus 628 ---i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v~~~p~ 703 (716)
+.+|.+++. -|.+-.............+.+|.+|...++|.|+|.|.|.+|.+- +.-.+.+...+.
T Consensus 778 ng~~qg~ki~~~----------~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~~~s 847 (1281)
T KOG4222|consen 778 NGILQGYKIECS----------GGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVFDTHS 847 (1281)
T ss_pred CCcccceeEEee----------cCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCCeeeecCCCc
Confidence 566666432 222100000000123347889999999999999999999999984 334455555444
Q ss_pred C
Q psy7040 704 A 704 (716)
Q Consensus 704 ~ 704 (716)
.
T Consensus 848 e 848 (1281)
T KOG4222|consen 848 E 848 (1281)
T ss_pred C
Confidence 3
No 7
>KOG0196|consensus
Probab=99.65 E-value=1.1e-14 Score=145.68 Aligned_cols=203 Identities=25% Similarity=0.324 Sum_probs=156.7
Q ss_pred EEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCC--CeEEccc--------cCcccceEE
Q psy7040 215 VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG--RWTPAGE--------TEGPVTGLE 284 (716)
Q Consensus 215 ~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~--~~~~~~~--------~~~~~~~~~ 284 (716)
...-.+.+|++|.+ +.. .+.++++.|.|.+|.+.+|..-..|.+..+..... ....|.. ..-.+..+.
T Consensus 324 ~~mpCT~PPSaP~n-lis-~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~ 401 (996)
T KOG0196|consen 324 PSMPCTRPPSAPRN-LIS-NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVT 401 (996)
T ss_pred CCCCCCCCCCccce-eee-ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEE
Confidence 34445678888887 444 48899999999999999998888998877554322 2222221 123578899
Q ss_pred EcCCCCCCeEEEEEEEEcCCC-CCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEE
Q psy7040 285 VEGLIPNHKYKFRVRAVNKQG-KSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEK 363 (716)
Q Consensus 285 i~~L~p~~~y~~~v~a~n~~g-~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~ 363 (716)
+.+|.+.+.|+|.|.|+|... .+........+...+....|++...+++.....++++|+|..|+.++| .|..|+|.|
T Consensus 402 v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~ildYEvky 480 (996)
T KOG0196|consen 402 VSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VILDYEVKY 480 (996)
T ss_pred EeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cceeEEEEE
Confidence 999999999999999999754 333334444566666678888889999999999999999999988877 589999999
Q ss_pred eecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec
Q psy7040 364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421 (716)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~ 421 (716)
.+.+. ............+..+|.+|+|++.|.|+|+|.+..|.|..|....+.+...
T Consensus 481 ~ek~~-~e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 481 YEKDE-DERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred eeccc-cccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 98763 2223334456778899999999999999999999999999998887777643
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.59 E-value=1.3e-13 Score=133.94 Aligned_cols=241 Identities=17% Similarity=0.186 Sum_probs=143.0
Q ss_pred EecCCeEEEEEEE-----eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 438 VRAGSNFEFDINV-----IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 438 ~~~g~~~~~~~~v-----~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.+|+.+.+.|.+ .+.|.+.+.|+|++... .+ .........+.|.++...|.|.|+|.|.|..|....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~--~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DR--IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ce--EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 4468888999987 68888999999997432 11 11222344688999999999999999999999888777
Q ss_pred EEEEEEEE---EEEeC-CCCCCCCceeeEEEE---EEecCCCceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEE
Q psy7040 513 KVTVLGCS---LKWNP-PEDDGGAPIEYYMVE---KMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQY 585 (716)
Q Consensus 513 ~~~v~~v~---l~W~~-p~~~~~~~i~~y~v~---~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~ 585 (716)
.+.|.... +.+.. |.....+......+. ......+.+.+.|.+................+.|.+++..+.+.|
T Consensus 113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y 192 (326)
T PHA02785 113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYY 192 (326)
T ss_pred EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEE
Confidence 77765211 11111 111111111112221 001123455699976532111111111235799999999999999
Q ss_pred EEEEEcCCCCCccce----eeeccCCCCCC-----ccceeeccceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEee
Q psy7040 586 TVTATNSQGKDQVFI----EVVVTDKPSAP-----EGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVT 656 (716)
Q Consensus 586 ~v~a~n~~G~~~~s~----~~~v~~~p~~~-----~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~ 656 (716)
.|.|.|..|.-.... .+.|..+..+| ..+....+..+.|.+++.++.-.. ...+.|+++|..+.
T Consensus 193 ~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~-------~~~v~W~kng~~i~ 265 (326)
T PHA02785 193 TCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTT-------DADVFWISNGMYYE 265 (326)
T ss_pred EEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCC-------CceEEEEECCEECC
Confidence 999999887543322 12233222222 211222244555444333221100 01689999998774
Q ss_pred eccc-------------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 657 IDNV-------------------DYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 657 ~~~~-------------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
.... .....|.|.++...|.|.|+|.|.|..|..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 3200 013579999999999999999999988433
No 9
>KOG0196|consensus
Probab=99.43 E-value=1.4e-11 Score=124.04 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=133.6
Q ss_pred CCCCCceEE-EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCC--CcEEEecccC----------CCeEEecCCCCCcE
Q psy7040 56 DPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET--GVWIPVGKTR----------EPEMDVTGLTPGHE 122 (716)
Q Consensus 56 ~p~~~l~~~-~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~--~~~~~~~~~~----------~~~~~i~~L~~~~~ 122 (716)
+|.+|.++. +++.+++.|+|.+|.+.+|..-..|.|..+.... +....|.... .+.+++.||.+.+.
T Consensus 331 PPSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~ 410 (996)
T KOG0196|consen 331 PPSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTN 410 (996)
T ss_pred CCCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccccc
Confidence 455565554 6899999999999999888877889998766542 2333343221 36899999999999
Q ss_pred EEEEEEEEecCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEE
Q psy7040 123 YKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV 202 (716)
Q Consensus 123 y~~~v~a~~~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c 202 (716)
|.|.|.|+|+.. ..+.....
T Consensus 411 YTFeV~AvNgVS--~lsp~~~~---------------------------------------------------------- 430 (996)
T KOG0196|consen 411 YTFEVEAVNGVS--DLSPFPRQ---------------------------------------------------------- 430 (996)
T ss_pred cEEEEEEeeccc--ccCCCCCc----------------------------------------------------------
Confidence 999999999543 22211000
Q ss_pred EEEeCCCCceeEEEEEE-ecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCC--CCeEEccccCcc
Q psy7040 203 TAENINGKDSVEVEVIV-LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT--GRWTPAGETEGP 279 (716)
Q Consensus 203 ~a~n~~g~~~~~~~~~v-~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~--~~~~~~~~~~~~ 279 (716)
...+.++. +..|.+... ++......++++|+|..|..++| .+..|.|.|.+... ..+.... ..
T Consensus 431 ---------~a~vnItt~qa~ps~V~~-~r~~~~~~~sitlsW~~p~~png-~ildYEvky~ek~~~e~~~~~~~---t~ 496 (996)
T KOG0196|consen 431 ---------FASVNITTNQAAPSPVSV-LRQVSRTSDSITLSWSEPDQPNG-VILDYEVKYYEKDEDERSYSTLK---TK 496 (996)
T ss_pred ---------ceeEEeeccccCCCccce-EEEeeeccCceEEecCCCCCCCC-cceeEEEEEeeccccccceeEEe---cc
Confidence 00011110 123444444 78888999999999999988877 48999999987642 2222222 34
Q ss_pred cceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEe
Q psy7040 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA 318 (716)
Q Consensus 280 ~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~ 318 (716)
.++.+|.+|+|++.|.|+|+|.+..|.+..+......+.
T Consensus 497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 688999999999999999999999999988877655443
No 10
>KOG4194|consensus
Probab=99.29 E-value=2.4e-10 Score=111.53 Aligned_cols=264 Identities=22% Similarity=0.217 Sum_probs=169.4
Q ss_pred CCcccccccccEEEecCCeEEEEEEEec--cCCCeEEEEeCCeEeccCC-----cEEEEe--------CCCeEEEEECCC
Q psy7040 425 SPYINRDQLSDIKVRAGSNFEFDINVIG--EPIPTKEWLCNDITIISKD-----RFKIVN--------DDKSTKLKVFDS 489 (716)
Q Consensus 425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~--~p~~~~~W~~~~~~~~~~~-----~~~~~~--------~~~~~~l~i~~l 489 (716)
.|+|.+ .+..+..-.|..+.|+|.+.+ ..+..+.|.++........ .+.... ......|.+.++
T Consensus 503 kpqI~~-qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 503 KPQIVT-QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred Ccceec-CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 455442 344555667899999999976 5666899999876432110 010000 012347899999
Q ss_pred CCCCceeEEEEEEcCCCce-eeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEccceee------
Q psy7040 490 KRGDSGIYTLAVKNSWGTD-KGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRV------ 561 (716)
Q Consensus 490 ~~~~~~~y~~~a~n~~g~~-~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~~~~~------ 561 (716)
...+.|.|.|.+.|..|.. +..+.+++. ...+.-. |.+-.-..-.--+++....+.+.|++.|-+.+....
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt-P~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR 660 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT-PEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER 660 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccC-cccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence 9999999999999999976 344555554 1122211 111000000112344444455667799988765421
Q ss_pred eeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccC
Q psy7040 562 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMP 641 (716)
Q Consensus 562 ~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~ 641 (716)
.-....+...+.|.+.++.+.+.|+|.|.|.+|.-.....+.|-+.|..-. ......|.+. +-..+.|.
T Consensus 661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~---PL~~~~V~~g--------et~vlqC~ 729 (873)
T KOG4194|consen 661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSI---PLEDQLVVVG--------ETLVLQCL 729 (873)
T ss_pred eeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccc---cccceEEEec--------ceEEEEEe
Confidence 111234457889999999999999999999999888888888766554211 1222222211 22236777
Q ss_pred cee-----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 642 ISL-----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 642 ~~~-----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
+.| ...|+|+.+++.-. ..+..+-+.+.+....|+|.|+|...|..|.-..-..+.+...
T Consensus 730 a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~ 798 (873)
T KOG4194|consen 730 AEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQK 798 (873)
T ss_pred cCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeec
Confidence 776 78999998877554 3455578999999999999999999999998766555555443
No 11
>KOG4258|consensus
Probab=99.26 E-value=3.5e-11 Score=121.58 Aligned_cols=359 Identities=14% Similarity=0.144 Sum_probs=191.5
Q ss_pred EEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCC--------------CCCeEEccccC-------cccceEEEcCCC
Q psy7040 231 KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA--------------TGRWTPAGETE-------GPVTGLEVEGLI 289 (716)
Q Consensus 231 ~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~--------------~~~~~~~~~~~-------~~~~~~~i~~L~ 289 (716)
.......+++.|+|..-...+-....+|.+.++... +..|....... +....+.+.+|+
T Consensus 495 ~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~Lk 574 (1025)
T KOG4258|consen 495 SSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLK 574 (1025)
T ss_pred eeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCC
Confidence 344567789999998644334445778888887642 23344333221 234468899999
Q ss_pred CCCeEEEEEEEEcCCCCCC-CCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCC
Q psy7040 290 PNHKYKFRVRAVNKQGKSE-PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYS 368 (716)
Q Consensus 290 p~~~y~~~v~a~n~~g~~~-~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~ 368 (716)
|.+.|-|.|++....-... ....+....+++....|.+|..+......++.|.|+|.+|..++| .++.|.|.|+....
T Consensus 575 P~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~~~ 653 (1025)
T KOG4258|consen 575 PWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQAE 653 (1025)
T ss_pred ccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEeccC
Confidence 9999999999985332222 114455567777888999999888777777899999999988776 79999999987653
Q ss_pred CceEEEeeecCC---------CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeec---CCCCCcccccccccE
Q psy7040 369 PIWEKCAQTEGD---------TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKVSPYINRDQLSDI 436 (716)
Q Consensus 369 ~~~~~~~~~~~~---------~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~ 436 (716)
.........-.. ...+...+..+-..++ ...|....-.+........ ....-.+...+...+
T Consensus 654 ~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e------~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i 727 (1025)
T KOG4258|consen 654 DGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEME------GHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAI 727 (1025)
T ss_pred CchHHHhccccccccccccccCCCCchhhcchhhhhc------cCCCCCCCCCcccccCchhhHHHHHHHHHhhhcccee
Confidence 322211111000 1112222222111111 0011100000000000000 000000000000000
Q ss_pred EEe---------cCCeEEE----EEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040 437 KVR---------AGSNFEF----DINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502 (716)
Q Consensus 437 ~~~---------~g~~~~~----~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~ 502 (716)
.+. .....+. .......|.- ..+ ...++. ..+-... .++..++.|++|...+.|.+.++|.
T Consensus 728 ~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t---~p~ei~-e~~p~~~-n~n~~~~vi~~Lrh~tlY~i~l~aC 802 (1025)
T KOG4258|consen 728 FVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTT---APTEIE-EPKPRLE-NGNKESYVISGLRHFTLYRIDLQAC 802 (1025)
T ss_pred eecccCcccccccccccceeeccccccccCCCCCCCC---CCcccc-ccCcccc-cccchhhhhhccccchhhhhhHhhh
Confidence 000 0000000 0000000000 000 000000 0000001 2455688899999999999999999
Q ss_pred cCCCc----eeeEEEEEEE----------------------EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEc
Q psy7040 503 NSWGT----DKGTAKVTVL----------------------GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRT 556 (716)
Q Consensus 503 n~~g~----~~~s~~~~v~----------------------~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~ 556 (716)
|..+. +..+..+..+ .+.|+|.+|..+||. |..|.|.++.........- +
T Consensus 803 nh~~~~~~cS~a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNGl-i~~Y~Vk~r~~~~et~v~c---v 878 (1025)
T KOG4258|consen 803 NHATPKCGCSHAAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNGL-ILNYEVKYRRNGDETHVEC---V 878 (1025)
T ss_pred cccccccccchhhhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCcc-EEEEEEEEeeccCcchhhh---h
Confidence 87665 2221111111 899999999999888 9999999986654111110 0
Q ss_pred cceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--ccCCCCCC
Q psy7040 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV--VTDKPSAP 611 (716)
Q Consensus 557 ~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~--v~~~p~~~ 611 (716)
.+........+.+.+|.+| .|..+|+|..-+|.|+....+. |...+.-+
T Consensus 879 -----sR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~~~~~~ 929 (1025)
T KOG4258|consen 879 -----SRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSDEDGLQ 929 (1025)
T ss_pred -----hhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEecCcccc
Confidence 0001111367888889888 5999999999999998877665 44444433
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.26 E-value=1.5e-10 Score=90.29 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=78.2
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.++.+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+........|.|.++...|.|.|+|.|.|..|....++
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~ 86 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV 86 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence 45788999999999999999999999999999999877788888777788999999999999999999999999999988
Q ss_pred EEEEE
Q psy7040 513 KVTVL 517 (716)
Q Consensus 513 ~~~v~ 517 (716)
.+.|.
T Consensus 87 ~l~V~ 91 (98)
T cd05762 87 NLTVV 91 (98)
T ss_pred EEEEe
Confidence 88776
No 13
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.21 E-value=4.1e-10 Score=85.40 Aligned_cols=82 Identities=29% Similarity=0.526 Sum_probs=72.0
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.+.|.|.|+|.|.|..|....++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467889999999999999999999999999988653 4677766666789999999999999999999999999888877
Q ss_pred EEE
Q psy7040 514 VTV 516 (716)
Q Consensus 514 ~~v 516 (716)
+.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 653
No 14
>KOG4194|consensus
Probab=99.20 E-value=3.9e-10 Score=110.06 Aligned_cols=214 Identities=16% Similarity=0.228 Sum_probs=151.6
Q ss_pred CeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEE
Q psy7040 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL 461 (716)
Q Consensus 382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~ 461 (716)
..+.+.++.-.+...|+|.+.|..|..-..... . .....|.+. ..+.++.+..|..+.+.|...|.|.|++.|.
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~K--l---tV~~~PsFt-ktP~dltl~tg~mArl~CaAtG~P~PeIawq 647 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAK--L---TVNQAPSFT-KTPEDLTLRTGQMARLECAATGHPRPEIAWQ 647 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeE--E---EeeccCccc-cCcccceeecccceeeeeeccCCCCcceeeh
Confidence 456778888889999999999999964322211 1 222356554 3466889999999999999999999999999
Q ss_pred eCCeE-eccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEEE-EEEEEeCCCCCCC-CceeeEE
Q psy7040 462 CNDIT-IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-CSLKWNPPEDDGG-APIEYYM 538 (716)
Q Consensus 462 ~~~~~-~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~~-v~l~W~~p~~~~~-~~i~~y~ 538 (716)
+++.. ++.....++........+.|.+++++|.|.|+|.|.|.+|.-+..+++.|.. ..+. .|..+.- ..-....
T Consensus 648 kdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~--~PL~~~~V~~get~v 725 (873)
T KOG4194|consen 648 KDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFS--IPLEDQLVVVGETLV 725 (873)
T ss_pred hcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCccc--ccccceEEEecceEE
Confidence 98876 6666666666666677899999999999999999999999999999888881 1111 1111110 0012344
Q ss_pred EEEEecCCCc-eeeeEEEccceeeeec---cccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040 539 VEKMETDTGK-VLIKWIRTNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603 (716)
Q Consensus 539 v~~~~~~~~~-~~~~w~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 603 (716)
++......+. |...|++......-.. ..+...-+.+.+-...+.+.|+|...|..|.-.......
T Consensus 726 lqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~ 794 (873)
T KOG4194|consen 726 LQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLL 794 (873)
T ss_pred EEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEE
Confidence 5555444433 7799999887664222 334456677777778899999999999888644433333
No 15
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.20 E-value=3.7e-10 Score=87.45 Aligned_cols=85 Identities=26% Similarity=0.481 Sum_probs=73.4
Q ss_pred ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
++..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 34467899999999999999999999999999999887777777654 44568999999999999999999999999888
Q ss_pred EEEEEE
Q psy7040 511 TAKVTV 516 (716)
Q Consensus 511 s~~~~v 516 (716)
...+.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 776653
No 16
>KOG4258|consensus
Probab=99.15 E-value=2.7e-09 Score=108.36 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=88.4
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecC-CC-CCCCCCCCcEEEe-eeCCeEEEEecCCCCCCCccce
Q psy7040 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKN-PF-NQPGKPGTPEIKD-FDTDFVELAWTPPEQNGGSPIV 357 (716)
Q Consensus 281 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~-~~-~~p~~p~~~~~~~-~~~~~i~l~W~~p~~~~~~~i~ 357 (716)
.++.|.+|...+.|.+.+.|.|..+...--+....+..++ +. .+-.-+..+.-.. ...+++.|+|.+|..++| .|.
T Consensus 782 ~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNG-li~ 860 (1025)
T KOG4258|consen 782 ESYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNG-LIL 860 (1025)
T ss_pred hhhhhhccccchhhhhhHhhhcccccccccchhhhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCc-cEE
Confidence 3567888999999999999998776521111111111111 10 1111122122222 267899999999988877 689
Q ss_pred EEEEEEeecCCCceEEEee--ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEee
Q psy7040 358 GYIIEKKEKYSPIWEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420 (716)
Q Consensus 358 ~y~v~~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~ 420 (716)
.|.|.++..+......... .........+..|.+| .|.++|+|.+-.|.|.+.+...+....
T Consensus 861 ~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~ 924 (1025)
T KOG4258|consen 861 NYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSD 924 (1025)
T ss_pred EEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEec
Confidence 9999999766433222111 1234456778888887 699999999999999998877665543
No 17
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.14 E-value=3e-10 Score=87.30 Aligned_cols=83 Identities=37% Similarity=0.691 Sum_probs=68.4
Q ss_pred CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCc-EEEecc-cCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV-WIPVGK-TREPEMDVTGLTPGHEYKFRVKALNKE 133 (716)
Q Consensus 56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~-~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~~~~ 133 (716)
+||.+|.+..++.+++.|+|++|. .++..+.+|.|+++...... +..... .....+.|.+|.|++.|.|+|+|.+..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 356778999999999999999987 45667999999999877665 544433 234699999999999999999999999
Q ss_pred ccCCCc
Q psy7040 134 GESEPL 139 (716)
Q Consensus 134 g~~~~s 139 (716)
|.|.+|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 987654
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.14 E-value=5.5e-10 Score=81.62 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=60.9
Q ss_pred EEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus 2 ~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 2 KLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 6899999999999999999998864 3566665443 3458999999999999999999999999988887754
No 19
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.13 E-value=8.8e-10 Score=85.87 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=69.8
Q ss_pred ccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCC-----CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 434 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
..+.+..|+.+.|.|.+.+ .|.|.+.|+|++..+.......+...+ ....|.|..+.++|.|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4578999999999999999 999999999999998755444433321 2578999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
.+.++.+.|
T Consensus 91 ~~~t~~L~V 99 (101)
T cd04975 91 KSLTFELYV 99 (101)
T ss_pred EEEEEEEEE
Confidence 888877765
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.12 E-value=1.1e-09 Score=80.87 Aligned_cols=73 Identities=32% Similarity=0.519 Sum_probs=65.9
Q ss_pred EEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 444 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 444 ~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++.+.|.|.|+|.|.|..|..+.++.+.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 5789999999999999999999987777888877777889999999999999999999999999888877653
No 21
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.12 E-value=1.6e-09 Score=83.96 Aligned_cols=89 Identities=26% Similarity=0.454 Sum_probs=76.3
Q ss_pred CCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 425 ~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
||.+. ..+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|.
T Consensus 3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCccc-ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 34444 23467889999999999999999999999999999887777788777777789999999999999999999999
Q ss_pred CCceeeEEEE
Q psy7040 505 WGTDKGTAKV 514 (716)
Q Consensus 505 ~g~~~~s~~~ 514 (716)
.|....+..+
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9988776654
No 22
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.12 E-value=2.7e-10 Score=88.83 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=59.5
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p 705 (716)
|.|.+.| .+.|+|+|+.+..+ .......|.|.++...|+|.|+|.|.|..|...+++.|.|.++|.||
T Consensus 20 l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 20 LFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 6677777 89999999988654 12234789999999999999999999999999999999999999988
No 23
>KOG0613|consensus
Probab=99.11 E-value=3e-09 Score=113.99 Aligned_cols=407 Identities=15% Similarity=0.098 Sum_probs=239.4
Q ss_pred EEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccccceEEecCCC
Q psy7040 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY 151 (716)
Q Consensus 72 ~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~~~~~~~~~p~ 151 (716)
.++|+.|..+.+.....|.+.........|.........-....++.+...|.+||.+.+..+....+.....-+.-+..
T Consensus 9 ~lr~~r~~~~~~~~~t~~~~~~~s~l~~~r~~~s~~~~~~v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~ 88 (1205)
T KOG0613|consen 9 CLRPDRPGKLVFEAKTTYTVDKLSILPDVRDSGSFIPDYGVLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPAT 88 (1205)
T ss_pred ccCcccCCCcccccCCCCCccccccChhhccCCCccccCcceeccCCcceeeeeeeccccccCCCCcccccchhhccccc
Confidence 78899888777778888988777665555544444444566778889999999999998877644433332221111100
Q ss_pred CcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeE
Q psy7040 152 SKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLK 231 (716)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~ 231 (716)
.. . ...........+.-+..-...+.+.|...-.+..+ ......+.....|..|..+-.
T Consensus 89 ~~-~-------------------~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~ 147 (1205)
T KOG0613|consen 89 EY-S-------------------LVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRE 147 (1205)
T ss_pred cc-c-------------------cccccccccccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCcc
Confidence 00 0 00000011122222333334444444444444444 333333333445544444345
Q ss_pred EeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCc
Q psy7040 232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT 311 (716)
Q Consensus 232 ~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~ 311 (716)
........+...|..+..+++.-...|.++.+..+...|............ +..+.....|.++|.+.+..+...+..
T Consensus 148 sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~--~~~a~~e~~v~~v~s~gqp~~~~~~~~ 225 (1205)
T KOG0613|consen 148 SVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDST--DTDAHYESRVRAVVSAGQPEPLERWEI 225 (1205)
T ss_pred ceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcc--eeccccceeEEEEEecCCCccchhhhh
Confidence 556677788899999988889889999999988887777655543222222 222333334444444433333222211
Q ss_pred ccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEee-cCCCceEEEeeecCCCCeEEecCCC
Q psy7040 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKE-KYSPIWEKCAQTEGDTPKGKVLDLI 390 (716)
Q Consensus 312 ~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~ 390 (716)
. .....++..|............+.+.|..+..+....+.+|.++... .+...|......+....+++...-.
T Consensus 226 ~------g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~ 299 (1205)
T KOG0613|consen 226 L------GELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKR 299 (1205)
T ss_pred c------ccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeeccc
Confidence 1 11223333444333333445668888887554444455666665554 3334454444445555666666667
Q ss_pred CCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEecc
Q psy7040 391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIIS 469 (716)
Q Consensus 391 ~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~ 469 (716)
.+..+.+++...-..|.+.+............+..|.. ......+.+..+..+.+.|.+.+.+.+. +.|++++.....
T Consensus 300 ~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~-~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~ 378 (1205)
T KOG0613|consen 300 QGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVG-LVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSE 378 (1205)
T ss_pred CCcccceeeeEEeeccccccCchhhhhhccCCcccccc-ccccceeccccCcceeecccccCCcCCchheeecccccccc
Confidence 77888888888888887766554433333222222221 2234455666677788888888888887 899988776654
Q ss_pred CC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 470 KD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 470 ~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
.. ..........+.+.+.++.++..|.++|.|.|..|..
T Consensus 379 ~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~ 419 (1205)
T KOG0613|consen 379 SLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTE 419 (1205)
T ss_pred cccccccccccccCcchhhhhcCcccccccccceeccCCcc
Confidence 44 3445556677889999999999999999999988754
No 24
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.10 E-value=1.7e-09 Score=83.95 Aligned_cols=84 Identities=31% Similarity=0.541 Sum_probs=78.4
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....++
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 46789999999999999999999999999999999999999999888999999999999999999999999999988888
Q ss_pred EEEE
Q psy7040 513 KVTV 516 (716)
Q Consensus 513 ~~~v 516 (716)
.+.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7764
No 25
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.10 E-value=2.2e-09 Score=82.71 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=69.9
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++.+.|.|.|+|.|.|..|....++
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~ 86 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV 86 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence 34566899999999999999999999999999887655444444444567899999999999999999999999988887
Q ss_pred EEE
Q psy7040 513 KVT 515 (716)
Q Consensus 513 ~~~ 515 (716)
.+.
T Consensus 87 ~L~ 89 (90)
T cd04972 87 QVT 89 (90)
T ss_pred EEe
Confidence 765
No 26
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.08 E-value=1.3e-09 Score=79.87 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=60.7
Q ss_pred EEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 444 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 444 ~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ....|.|.++.++|.|.|+|.|.|..|..+.++.+.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 36899999999999999999988864 3455555443 3347999999999999999999999999988887754
No 27
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.08 E-value=1.2e-09 Score=79.58 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=62.8
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
|..+.|.|.+.+.|.+.+.|++++..+....++.+... ..|.|.++.+.|.|.|+|.|.|..|....++.+.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 56789999999999999999999988776666665432 37999999999999999999999999988887753
No 28
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.06 E-value=9.1e-10 Score=84.55 Aligned_cols=83 Identities=31% Similarity=0.562 Sum_probs=69.2
Q ss_pred CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCC
Q psy7040 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406 (716)
Q Consensus 327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g 406 (716)
+|.++.+...+.+++.|+|.+|. ..++.+.+|.|+++...................+.|.+|.|++.|.|+|+|.|..|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 57889999999999999999976 45668999999999887665333344555666999999999999999999999999
Q ss_pred CCCC
Q psy7040 407 PGEP 410 (716)
Q Consensus 407 ~~~~ 410 (716)
.|++
T Consensus 81 ~g~~ 84 (85)
T PF00041_consen 81 EGPP 84 (85)
T ss_dssp EEEE
T ss_pred CcCC
Confidence 7754
No 29
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.06 E-value=1.8e-09 Score=82.39 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=67.4
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++. .. ...|.|.++.++|.|.|+|.|.|..|....++
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 83 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MS--GAVLKIFNIQPEDEGTYECEAENIKGKDKHQA 83 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cC--CCEEEECcCChhhCEEEEEEEEcCCCceEEEE
Confidence 446778999999999999999999999999988765443332 22 34799999999999999999999999998888
Q ss_pred EEEE
Q psy7040 513 KVTV 516 (716)
Q Consensus 513 ~~~v 516 (716)
.+.|
T Consensus 84 ~l~V 87 (88)
T cd05851 84 RVYV 87 (88)
T ss_pred EEEE
Confidence 7765
No 30
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.05 E-value=3.8e-09 Score=82.61 Aligned_cols=83 Identities=18% Similarity=0.367 Sum_probs=69.2
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
..+..+..|+.+.|.|.+.|.|.+.+.|++++..+... .++.+ ......|.|.++...|.|.|+|.|.|..|....+
T Consensus 10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 87 (95)
T cd05730 10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE 87 (95)
T ss_pred ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence 34567899999999999999999999999999887654 33332 3345579999999999999999999999998888
Q ss_pred EEEEEE
Q psy7040 512 AKVTVL 517 (716)
Q Consensus 512 ~~~~v~ 517 (716)
+.+.|.
T Consensus 88 ~~L~V~ 93 (95)
T cd05730 88 IHLKVF 93 (95)
T ss_pred EEEEEE
Confidence 877663
No 31
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.04 E-value=1.3e-09 Score=83.08 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=57.4
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p 702 (716)
|.|.+.| .+.|++++..+.... ......|.|.++...|+|.|+|.|.|..|....+..|.|..+|
T Consensus 6 l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P 85 (88)
T cd05735 6 MSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85 (88)
T ss_pred EEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence 6777777 899999998774431 1122679999999999999999999999999999999999999
Q ss_pred CCC
Q psy7040 703 SAP 705 (716)
Q Consensus 703 ~~p 705 (716)
.+|
T Consensus 86 ~~P 88 (88)
T cd05735 86 DPP 88 (88)
T ss_pred CCC
Confidence 887
No 32
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.04 E-value=1.7e-09 Score=79.68 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=62.7
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.+.|.|.|+|.|.|..|....++.+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 47889999999999999999999998876655544432 238999999999999999999999999888877653
No 33
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.02 E-value=4.7e-09 Score=82.00 Aligned_cols=82 Identities=24% Similarity=0.268 Sum_probs=68.0
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeC------CCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND------DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
...+..+..+.|.|.+.|.|.|.+.|++++..+........... .....|.|.++...|.|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46677889999999999999999999999999876554332211 224689999999999999999999999999
Q ss_pred eeEEEEEE
Q psy7040 509 KGTAKVTV 516 (716)
Q Consensus 509 ~~s~~~~v 516 (716)
+.++.+.+
T Consensus 92 ~~t~~l~V 99 (101)
T cd05859 92 SYTFALQI 99 (101)
T ss_pred EEEEEEEE
Confidence 88887765
No 34
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.01 E-value=6.9e-09 Score=80.02 Aligned_cols=84 Identities=25% Similarity=0.459 Sum_probs=71.4
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCC-CeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+.... ....|.|.++.+.|.|.|+|.|.|..|....+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 34678999999999999999999999999999988776666655433 33579999999999999999999999999888
Q ss_pred EEEEE
Q psy7040 512 AKVTV 516 (716)
Q Consensus 512 ~~~~v 516 (716)
+.+.+
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 77753
No 35
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.01 E-value=5.2e-09 Score=77.06 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=60.1
Q ss_pred EEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+.. ..++.+... .....|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus 2 ~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 2 RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 6899999999999999999988864 345555443 34457999999999999999999999999888877653
No 36
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.00 E-value=5.9e-09 Score=77.74 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=63.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
|+.+.|.|.+.+.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 56789999999999999999999988877677777766667899999999999999999999999987655443
No 37
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.98 E-value=6.2e-09 Score=75.87 Aligned_cols=70 Identities=31% Similarity=0.604 Sum_probs=59.6
Q ss_pred EEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 444 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 444 ~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+.|.|.+.|.|.|.+.|++++..+....++.+...+ .+.|.++.+.|.|.|+|.|.|..|....++.+.+
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 579999999999999999999888766666655443 4778899999999999999999999988877653
No 38
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.98 E-value=6.3e-09 Score=79.92 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=67.5
Q ss_pred ccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 432 ~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
.+.+..+..|..+.|.|.+.+.|.+.+.|++++..+....... .....|.|.++..+|.|.|+|.|.|..|....+
T Consensus 7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 3456778899999999999999999999999887664443332 124589999999999999999999999999888
Q ss_pred EEEEE
Q psy7040 512 AKVTV 516 (716)
Q Consensus 512 ~~~~v 516 (716)
..+.+
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 87765
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.97 E-value=4.8e-09 Score=74.27 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|+|++..+... .....|.|.++..+|.|.|+|.|.|..|....+..+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 2 KLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 68999999999999999999887521 23558999999999999999999999998777666554
No 40
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.96 E-value=1.4e-08 Score=77.50 Aligned_cols=81 Identities=23% Similarity=0.485 Sum_probs=67.3
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-e
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-G 510 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~ 510 (716)
+.++.+..|+.+.|.|.+.|.|. .+.|+++ +..+....++.+...+....|.|.++...|.|.|+|.|.|..|... .
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 34677899999999999999998 9999984 6666666677777666677999999999999999999999999763 3
Q ss_pred EEEE
Q psy7040 511 TAKV 514 (716)
Q Consensus 511 s~~~ 514 (716)
+..+
T Consensus 86 ~i~l 89 (92)
T cd05866 86 TVVL 89 (92)
T ss_pred EEEE
Confidence 4444
No 41
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.96 E-value=8e-09 Score=78.47 Aligned_cols=80 Identities=28% Similarity=0.519 Sum_probs=68.4
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
+.+..+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+. ...|.|.++...|.|.|+|.|.|..|....++
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 44678999999999999999999999999999988765555543 23799999999999999999999999988877
Q ss_pred EEEE
Q psy7040 513 KVTV 516 (716)
Q Consensus 513 ~~~v 516 (716)
.+.+
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 7653
No 42
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.95 E-value=1.1e-08 Score=80.22 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=66.9
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeC--CeEecc-----CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIIS-----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
+.+..+.+|+.+.|.|.+.|.|.|.+.|++. +..+.. ..++.+........|.|.++.++|.|.|.|.|.|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 4578899999999999999999999999994 333321 234555444456789999999999999999999999
Q ss_pred CceeeEEEEE
Q psy7040 506 GTDKGTAKVT 515 (716)
Q Consensus 506 g~~~~s~~~~ 515 (716)
|....++.+.
T Consensus 88 G~~~~~~~l~ 97 (98)
T cd05870 88 GGHQKSMYLD 97 (98)
T ss_pred CcceeEEEEe
Confidence 9888777664
No 43
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.95 E-value=8.4e-09 Score=76.25 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
|..+.|.|.+.|.|.|.+.|++++..+..... .....+ ...+.|.++.+.|.|.|+|.|.|..|....++.+.|+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 46779999999999999999999988753322 112222 2378899999999999999999999999999888763
No 44
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.94 E-value=1.5e-08 Score=78.38 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=65.1
Q ss_pred cEEEecCCeEEEEEEEeccCC-CeEEEEe-CCeEecc-CCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCC-Ccee
Q psy7040 435 DIKVRAGSNFEFDINVIGEPI-PTKEWLC-NDITIIS-KDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSW-GTDK 509 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~-~~~~W~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~-g~~~ 509 (716)
...+..|+.+.|.|.+.|.|. +.+.|++ ++..+.. ..++.+.. ++....|.|.++.+.|.|.|+|.|.|.. |...
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 456889999999999999995 7999998 6665544 33444433 3345789999999999999999999996 8888
Q ss_pred eEEEEEE
Q psy7040 510 GTAKVTV 516 (716)
Q Consensus 510 ~s~~~~v 516 (716)
.++.+.+
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 8877665
No 45
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.94 E-value=2.8e-07 Score=90.04 Aligned_cols=219 Identities=11% Similarity=0.019 Sum_probs=122.9
Q ss_pred ceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCC--CCCccceE
Q psy7040 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ--NGGSPIVG 358 (716)
Q Consensus 281 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~--~~~~~i~~ 358 (716)
..+.|.+....+.+.|.|.|.|..|....+.... +....+......+....+ .......+.|..... .++.+
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~-V~~~~~~~~~~~~~~~~~--~~g~~~~i~C~~~~~~~~~~~~--- 155 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLT-IVSVSESNIDLISYPQIV--NERSTGEMVCPNINAFIASNVN--- 155 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEE-EEecCCCccceeecccee--cccCcEEEECCChhhcccCCCC---
Confidence 4577889999999999999999876543222111 111111000000111111 122334555542100 00100
Q ss_pred EEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCC-CCceEeecCCCCCcccccccccEE
Q psy7040 359 YIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP-TAPHIARAKKVSPYINRDQLSDIK 437 (716)
Q Consensus 359 y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~-~~~~~~~~~~~~P~~~~~~~~~~~ 437 (716)
-.|.|............ ......+.|.++...+.+.|.|.|.|..|.-..... .....+..+..+|.+. .+..+.
T Consensus 156 ~~i~W~k~~~~~~~r~~--~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~--~p~~~~ 231 (326)
T PHA02785 156 ADIIWSGHRRLRNKRLK--QRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ--LPEGVV 231 (326)
T ss_pred ceEEEccCCccCCcceE--ecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec--CCCcEE
Confidence 11222111100000111 112357899999999999999999998775332111 0111222233455432 235677
Q ss_pred EecCCeEEEEEEEeccCCC---eEEEEeCCeEeccCC-----cEEEEeCC--------CeEEEEECCCCCCCceeEEEEE
Q psy7040 438 VRAGSNFEFDINVIGEPIP---TKEWLCNDITIISKD-----RFKIVNDD--------KSTKLKVFDSKRGDSGIYTLAV 501 (716)
Q Consensus 438 ~~~g~~~~~~~~v~~~p~~---~~~W~~~~~~~~~~~-----~~~~~~~~--------~~~~l~i~~l~~~~~~~y~~~a 501 (716)
+..|..+.|.|.+.+.|.+ .+.|.+++..+...+ ++...... ....|.|.+++.+|.|.|+|.|
T Consensus 232 ~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A 311 (326)
T PHA02785 232 TSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA 311 (326)
T ss_pred ecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEE
Confidence 7889999999999998874 799999998775321 22221110 1357999999999999999999
Q ss_pred EcCCCcee
Q psy7040 502 KNSWGTDK 509 (716)
Q Consensus 502 ~n~~g~~~ 509 (716)
.|..|...
T Consensus 312 ~n~~~~~~ 319 (326)
T PHA02785 312 FTIPSISK 319 (326)
T ss_pred EeccCceE
Confidence 99885443
No 46
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.94 E-value=4.2e-08 Score=89.17 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=54.1
Q ss_pred ccEEEecCCeEEEEEEEeccC-----------CCeEEEEeCCeEe--c-cCCc---EEEEe---CCCeEEEEECCCCCCC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEP-----------IPTKEWLCNDITI--I-SKDR---FKIVN---DDKSTKLKVFDSKRGD 493 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p-----------~~~~~W~~~~~~~--~-~~~~---~~~~~---~~~~~~l~i~~l~~~~ 493 (716)
..+.+.+|+++.|.|.+.+.+ .+.+.|++.+... . .+.+ ..+.. ......|.|.++...|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 346788999999999986643 4589999987542 1 1111 00000 1124589999999999
Q ss_pred ceeEEEEEEcCCCceeeEE
Q psy7040 494 SGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 494 ~~~y~~~a~n~~g~~~~s~ 512 (716)
.|.|+|.|.|..|....+.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i 128 (227)
T PHA02826 110 EGIYICTISSGNICEESTI 128 (227)
T ss_pred CEEEEEEEEECCcceEEEE
Confidence 9999999999776554443
No 47
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.93 E-value=3e-09 Score=77.77 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=50.7
Q ss_pred eccCcee----eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+|+++.+..+. .....+|.|.++..+|+|.|+|.|.|.+|...++++|.|
T Consensus 3 l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 3 LECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 6788888 999999999886321 111237999999999999999999999999999998875
No 48
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.93 E-value=1.1e-08 Score=75.19 Aligned_cols=73 Identities=23% Similarity=0.415 Sum_probs=62.6
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
|..+.|.|.+.+.|.+.+.|++++..+....++.+... ..|.|.++.+.|.|.|+|.|.|..|....++.+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 56789999999999999999999998877666665332 36999999999999999999999999988877754
No 49
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.92 E-value=1.9e-08 Score=78.96 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=68.0
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+........|.|.++...|.|.|.|.|.|..|.
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 87 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG 87 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence 44677889999999999999999999999988655432 2334433445678999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
...++.+.+
T Consensus 88 ~~~s~~l~v 96 (96)
T cd05732 88 DQQSMYLEV 96 (96)
T ss_pred cEEEEEEeC
Confidence 888776653
No 50
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.91 E-value=2e-08 Score=76.69 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=66.0
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcE-EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
..+..|..+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++.+.|.|.|+|.|.|..|....++.+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 35778999999999999999999999999988654432 12222345579999999999999999999999998888776
Q ss_pred EE
Q psy7040 515 TV 516 (716)
Q Consensus 515 ~v 516 (716)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 53
No 51
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.91 E-value=1.6e-08 Score=75.26 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=57.8
Q ss_pred EEEEEeccCCCeEEEEeCCeEeccCCcEEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+.|.+.|.|.|.++|++++..+.......... ......|.|.++.+.|.|.|+|.|.|..|....+..+..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 67899999999999999999987665433221 123557999999999999999999999999888776653
No 52
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.91 E-value=4.7e-09 Score=74.29 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=50.3
Q ss_pred eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|+|+|+.+... .....|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus 3 l~c~v~g~P~P~v~W~kdg~~l~~~--~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 3 LPVKVAAYPPPEFQWYKDGKLISGK--HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred EEEEEEEeCCCEEEEEECCEECccc--CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5677777 89999999988633 234699999999999999999999999988877777664
No 53
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.90 E-value=4.6e-09 Score=78.18 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=53.6
Q ss_pred eccCcee------eEEEEeCCeEeeec--cc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 638 SLMPISL------ESQYLMNDKRVTID--NV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 638 ~~~~~~~------~~~W~~~~~~~~~~--~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
|.|.+.+ .+.|+++|+.+... .. .....|.|.+++..|+|+|+|.|.|.++...+++.|.|..|
T Consensus 5 l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~p 84 (85)
T cd05853 5 LPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGP 84 (85)
T ss_pred EEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecC
Confidence 5565543 88999999999632 11 12347999999999999999999999999999999999988
Q ss_pred C
Q psy7040 702 P 702 (716)
Q Consensus 702 p 702 (716)
|
T Consensus 85 P 85 (85)
T cd05853 85 P 85 (85)
T ss_pred C
Confidence 7
No 54
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.90 E-value=7.1e-09 Score=78.39 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=53.7
Q ss_pred eccCcee------eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 638 SLMPISL------ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 638 ~~~~~~~------~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
|.|.+.| .+.|+++|..+.... ......|.|.+++..|+|.|+|.|.|.+|...+++.|.|..|
T Consensus 5 L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~ 84 (85)
T cd05854 5 LQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGP 84 (85)
T ss_pred EEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECC
Confidence 6676666 579999998875421 112368999999999999999999999999999999999987
Q ss_pred C
Q psy7040 702 P 702 (716)
Q Consensus 702 p 702 (716)
|
T Consensus 85 P 85 (85)
T cd05854 85 P 85 (85)
T ss_pred C
Confidence 6
No 55
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.89 E-value=3.1e-08 Score=73.44 Aligned_cols=74 Identities=27% Similarity=0.370 Sum_probs=60.0
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCc-EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
|+.+.|.|.+.|.|.|.+.|++++..+..... ...... ...|.|.++.+.|.|.|.|.|.|..|.....+.+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS--SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee--CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 56789999999999999999999988764321 122222 347999999999999999999999999888877765
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.89 E-value=5e-09 Score=76.77 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=50.3
Q ss_pred eccCcee----eEEEEeCCeEeeeccc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+|++..+..... .....|.|.++.++|+|.|+|.|.|.+|+.+.++.|.|
T Consensus 3 l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 3 LECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 6788888 9999999988764311 11136999999999999999999999999999998875
No 57
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.89 E-value=1.5e-08 Score=75.45 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=61.5
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
|+.+.|.|.+.+.|.|.+.|++++..+....... ........|.|.++...|.|.|+|.|.|..|....++.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 5678999999999999999999998876543321 12223458999999999999999999999999988887765
No 58
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.89 E-value=3.4e-08 Score=77.30 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=64.7
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++...|.|.|+|.|.|..|....
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34556899999999999999999999988765432 2333344444568999999999999999999999999988
Q ss_pred EEEEEE
Q psy7040 511 TAKVTV 516 (716)
Q Consensus 511 s~~~~v 516 (716)
++.+.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 877654
No 59
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.88 E-value=1.3e-08 Score=73.08 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=55.9
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.+.|.+.|.|.|.+.|++++..+.....+ . ....|.|.++.+.|.|.|+|.|.|..|......++.+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 57899999999999999999998654332 1 2347999999999999999999999998877666654
No 60
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.88 E-value=2.1e-08 Score=73.48 Aligned_cols=70 Identities=23% Similarity=0.403 Sum_probs=57.1
Q ss_pred EEEEEeccCCCeEEEEeCCeEeccCCcEEE--Ee---CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040 446 FDINVIGEPIPTKEWLCNDITIISKDRFKI--VN---DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515 (716)
Q Consensus 446 ~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~ 515 (716)
+.|.+.|.|.|.+.|++++..+..+..... .. ......|.|.++.+.|.|.|+|.|.|..|....+..+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 678899999999999999999976654322 11 22356899999999999999999999999888776654
No 61
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.87 E-value=1.3e-08 Score=73.64 Aligned_cols=67 Identities=21% Similarity=0.382 Sum_probs=57.6
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.+.|.|.|+|.|.|..|..+.+..+
T Consensus 2 ~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 2 QIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred EeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 689999999999999999998887666665533 3479999999999999999999999998877665
No 62
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.87 E-value=1.9e-08 Score=73.12 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=57.0
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+....++. . ....|.|.++.+.|.|.|+|.|.|..|....+..+.+
T Consensus 2 ~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~--~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 2 RLPVKVKAYPPPEIQWYKNGKLISEKNRTK--K--SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEE--c--CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 688999999999999999999887664332 2 2458999999999999999999999998777766654
No 63
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.86 E-value=5.2e-08 Score=74.30 Aligned_cols=77 Identities=27% Similarity=0.466 Sum_probs=63.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEe----CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN----DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~ 515 (716)
|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. ......|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 567899999999999999999999877543 3554442 12236899999999999999999999999998888777
Q ss_pred EE
Q psy7040 516 VL 517 (716)
Q Consensus 516 v~ 517 (716)
+.
T Consensus 81 V~ 82 (88)
T cd05735 81 VQ 82 (88)
T ss_pred Ee
Confidence 65
No 64
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.85 E-value=3e-08 Score=73.70 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=61.3
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
.|.|.+.+.|.+.+.|++++..+.......+...+....|.|.++...|.|.|+|.|.|..|....++.+.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 6889999999999999999998865544444444556689999999999999999999999998888877653
No 65
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.83 E-value=4.2e-08 Score=73.22 Aligned_cols=76 Identities=16% Similarity=0.357 Sum_probs=63.8
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
...+..|+.+.|.|.+.+. .+.+.|++++..+....++.+.. ..|.|.++.++|+|.|+|.|.|..|.....+.+
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 4678899999999999986 56899999999887766665532 379999999999999999999999887766655
Q ss_pred E
Q psy7040 515 T 515 (716)
Q Consensus 515 ~ 515 (716)
.
T Consensus 78 ~ 78 (79)
T cd04973 78 N 78 (79)
T ss_pred e
Confidence 4
No 66
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.82 E-value=6.3e-08 Score=74.20 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=63.9
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee-eE
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GT 511 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~-~s 511 (716)
..++.+.+|+.+.|.|.+.+. .+.+.|++++..+... ++.+. .....|.|.++.+.|.|.|.|.|.|..|... ..
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 345688999999999999999 9999999999887543 33333 3345899999999999999999999999753 35
Q ss_pred EEEEE
Q psy7040 512 AKVTV 516 (716)
Q Consensus 512 ~~~~v 516 (716)
+.+.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 55544
No 67
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.81 E-value=2.3e-08 Score=73.96 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=55.4
Q ss_pred EEEEEEeccCCCeEEEEeCCeEec-cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++.... .....++........|.|.++.++|.|.|+|.|.|..|....++.+.|
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 688999999999999999886422 111112222223347999999999999999999999999888887766
No 68
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.81 E-value=2.2e-08 Score=73.40 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=49.1
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
+.|.+.| +++|+|+|+++..+. ......|.|.++...|+|.|+|.|.|..|+...+..+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4566677 999999999986541 12335799999999999999999999999998887765
No 69
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.81 E-value=1.4e-08 Score=73.01 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=50.2
Q ss_pred eccCcee----eEEEEeCCeEeeecc-cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
+.|.+.| .+.|+|+|+++.... ......|.|.++.+.|+|.|+|.|.|..|..+....+++.
T Consensus 3 ~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 3 IPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred EEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 5677777 899999999886541 1122579999999999999999999999988877776654
No 70
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.80 E-value=4.2e-08 Score=72.75 Aligned_cols=65 Identities=20% Similarity=0.455 Sum_probs=53.0
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCC-cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
.|.|.+.|.|.|.+.|++++..+.... .+.+. .....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus 2 ~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 67 (77)
T cd05760 2 TLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67 (77)
T ss_pred EEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeC
Confidence 689999999999999999999876543 33332 234589999999999999999999999976443
No 71
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.80 E-value=1.4e-08 Score=74.02 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=50.3
Q ss_pred eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| ++.|++++..+..+ .......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 6 l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 6 IECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred EEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6777777 89999999877544 1112358999999999999999999999999999988865
No 72
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.79 E-value=2.1e-08 Score=73.85 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=50.2
Q ss_pred eccCcee----eEEEEeCCeEeeeccc--------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV--------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~--------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+|++..+..... ....+|.|.++...|+|.|+|.|.|.+|...+++.|.|
T Consensus 3 L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 3 LECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 6777777 8999999988864311 11236999999999999999999999999999988875
No 73
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.79 E-value=1.9e-08 Score=76.53 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=53.4
Q ss_pred eccCcee------eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 638 SLMPISL------ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 638 ~~~~~~~------~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
|.|.+.| .+.|+++|..+.... ......|.|.+++..|+|.|+|.|.|..|....++.|.|..|
T Consensus 5 L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p 84 (85)
T cd04970 5 LQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGP 84 (85)
T ss_pred EEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECC
Confidence 5666665 568999998875331 112367999999999999999999999999999999999987
Q ss_pred C
Q psy7040 702 P 702 (716)
Q Consensus 702 p 702 (716)
|
T Consensus 85 P 85 (85)
T cd04970 85 P 85 (85)
T ss_pred C
Confidence 6
No 74
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.79 E-value=4.3e-08 Score=71.41 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=56.6
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+.... ... ......|.|.++.+.|.|.|+|.|.|..|....+..+.|
T Consensus 2 ~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 2 VLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred EEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 588999999999999999987765432 222 223568999999999999999999999999888877765
No 75
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.79 E-value=1.1e-07 Score=71.91 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=60.0
Q ss_pred eEEEEEEEeccCCC--eEEEEeCCeEeccC---CcEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 443 NFEFDINVIGEPIP--TKEWLCNDITIISK---DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 443 ~~~~~~~v~~~p~~--~~~W~~~~~~~~~~---~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.+.|.|.+.+.|.+ .+.|++++..+... .++. +........|.|.+++..|.|.|+|.|.|..|....++.+.|
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 56899999999987 57999999887532 2332 222234568999999999999999999999999999888876
Q ss_pred E
Q psy7040 517 L 517 (716)
Q Consensus 517 ~ 517 (716)
.
T Consensus 82 ~ 82 (85)
T cd05854 82 R 82 (85)
T ss_pred E
Confidence 4
No 76
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.79 E-value=2.5e-08 Score=73.59 Aligned_cols=61 Identities=28% Similarity=0.392 Sum_probs=50.7
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+..+ .......|.|.++.+.|+|.|+|.|.|..|..+.++.|.|
T Consensus 4 l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 4 LEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 6777777 99999999987443 1223468999999999999999999999999988887764
No 77
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.78 E-value=1.6e-08 Score=73.65 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=50.0
Q ss_pred eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+.... ......+.|.++.++|.|.|+|.|.|..|....++.|.|
T Consensus 4 l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 4 FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 6787777 999999998876541 112246889999999999999999999999999888864
No 78
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.77 E-value=1.7e-07 Score=73.45 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=65.0
Q ss_pred ccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccC--CcEEEEeC----CCeEEEEECCCCC-CCceeEEEEEEcCC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISK--DRFKIVND----DKSTKLKVFDSKR-GDSGIYTLAVKNSW 505 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~l~~-~~~~~y~~~a~n~~ 505 (716)
....+..|..+.|.|.+.+.|.| .+.|++++..+... .++.+... +....|.|.++.. ++.|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 45668899999999999999999 69999999887643 45655443 2335899999999 45899999999999
Q ss_pred CceeeEEEE
Q psy7040 506 GTDKGTAKV 514 (716)
Q Consensus 506 g~~~~s~~~ 514 (716)
|.....+.+
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 998776654
No 79
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.76 E-value=2e-07 Score=74.35 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=62.2
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeC----CCeEEEEECCCC-CCCceeEEEEEEcCCCceeeEEE
Q psy7040 440 AGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND----DKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.|..+.|.|.+.|.|.+.+.|++++..+.. ..++.+... .....|.|.++. ..|.|.|+|.|.|..|....++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 457899999999999999999999988763 334443321 124679999997 58999999999999999888777
Q ss_pred EEEE
Q psy7040 514 VTVL 517 (716)
Q Consensus 514 ~~v~ 517 (716)
+.+.
T Consensus 102 L~~~ 105 (109)
T cd05773 102 LVST 105 (109)
T ss_pred EEec
Confidence 7654
No 80
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.75 E-value=2.6e-08 Score=72.38 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=50.6
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|+|+|.++..+ .......|.|.++...|+|.|+|.|.|..|....+..+.+.
T Consensus 3 l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 3 LPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred EEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 6677777 89999999988654 11223689999999999999999999999998878777664
No 81
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.74 E-value=6e-08 Score=70.36 Aligned_cols=68 Identities=34% Similarity=0.527 Sum_probs=55.7
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.+.|.|.+.|++++..+.. .++.+. ....|.|.++.++|.|.|+|.|.|..|....+..+.|
T Consensus 2 ~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 2 EFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 6899999999999999999776543 334443 2347999999999999999999999999888776653
No 82
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.73 E-value=4.8e-08 Score=72.77 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=49.3
Q ss_pred eccCcee----eEEEEeCCeEeeeccc-------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV-------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~-------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
+.|.+.| .++|+|+|+++..+.. .....|.|.++...|.|.|+|.|.|.+|...++..|.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 4566667 8999999998876521 11347999999999999999999999999988877653
No 83
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.73 E-value=2.4e-08 Score=73.58 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=50.7
Q ss_pred eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 7 l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 7 FLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 7787777 899999998776441 122358999999999999999999999999998888865
No 84
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.73 E-value=4.7e-08 Score=74.10 Aligned_cols=61 Identities=30% Similarity=0.339 Sum_probs=50.8
Q ss_pred eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+.... ......|.|.++.+.|+|.|+|.|.|..|....+..|.|
T Consensus 15 l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 15 LDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 7777777 999999999886531 122468999999999999999999999999988887764
No 85
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.73 E-value=1.3e-07 Score=68.05 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=54.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
|..+.|.|.+.|.|.|.+.|++++..+.....+.. ....|.|.++. +.|.|+|.|.|..|....++.+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 56789999999999999999999988755443322 23368888874 6899999999999987776654
No 86
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.72 E-value=3.4e-08 Score=71.53 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=48.9
Q ss_pred eccCcee----eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++...|+|.|+|.|.|..|..+.+..|
T Consensus 3 L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 3 IPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred eEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 6788887 899999998876541 1223689999999999999999999999999887766
No 87
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.72 E-value=2.9e-08 Score=72.34 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=50.5
Q ss_pred eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++...|.|.|+|.|.|..|..+.+..|.|
T Consensus 3 L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 3 LECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred EEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 6777777 89999998766543 1123368999999999999999999999999998888876
No 88
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.71 E-value=1.2e-07 Score=69.64 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=54.5
Q ss_pred EEEEEEeccCCCeEEEEeCCeEecc--CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+.. ..++.. .. ...|.|.++...|.|.|+|.|.|..|.. +..+.+.|
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~--~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ--LR-SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEEeEecCCEEEEEECCEECccCCCCCEEE--cC-CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 6899999999999999999988763 334433 22 2369999999999999999999999975 45555544
No 89
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.71 E-value=1.3e-07 Score=72.83 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=57.6
Q ss_pred CCeEEEEEEEeccCCCeEEEEeC----CeEeccCCc--EEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCN----DITIISKDR--FKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
|..+.|.|.+.+.|.|.+.|+++ +..+..... ..+.. ......|.|.++..+|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 56789999999999999999984 333322211 11111 122358999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
...++.+.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888776
No 90
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.71 E-value=9.8e-08 Score=70.85 Aligned_cols=69 Identities=29% Similarity=0.396 Sum_probs=56.8
Q ss_pred EEEEEEec-cCCCeEEEEeCCeEeccCCcE---EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 445 EFDINVIG-EPIPTKEWLCNDITIISKDRF---KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 445 ~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.|.|.+.+ .|.+.+.|++++..+...... .+........|.|.++.+.|.|.|+|.|.|..|....++.
T Consensus 2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 58899999 999999999999888654432 2444455678999999999999999999999998776654
No 91
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.70 E-value=1.7e-07 Score=69.14 Aligned_cols=73 Identities=19% Similarity=0.394 Sum_probs=57.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEe-CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
|+.+.|.|.+.+.|.|.+.|++ ++..+....++.... ...|.|..+...|.|.|+|.|.|..|....++.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 5678999999999999999997 555554444443322 237899999999999999999999998877776653
No 92
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.70 E-value=1.4e-07 Score=71.63 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=62.8
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~ 515 (716)
+....|+.+.|.|.+.+.|.+.+.|++++..+....... .......|.|.++.++|.|.|+|.|.|..|....++.+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 446678999999999999999999999988765433322 222356899999999999999999999999877776654
No 93
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.69 E-value=1.5e-07 Score=72.49 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=59.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEec--------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
|+.+.|.|.+.+.|.+.+.|++++.... ...++.+.. ...|.|.++.+.|.|.|.|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 5678999999999999999999876431 223333322 23699999999999999999999999988888
Q ss_pred EEEEE
Q psy7040 513 KVTVL 517 (716)
Q Consensus 513 ~~~v~ 517 (716)
.+.|.
T Consensus 78 ~l~V~ 82 (90)
T cd05726 78 YLEVT 82 (90)
T ss_pred EEEEe
Confidence 77776
No 94
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.69 E-value=4.3e-08 Score=76.62 Aligned_cols=62 Identities=13% Similarity=0.284 Sum_probs=52.1
Q ss_pred eccCcee----eEEEEeCCeEeeeccc------------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV------------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~------------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|+|+|.++..+.. .....|.|.++...|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 23 l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 23 FVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred EEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 6677777 8999999999875421 123589999999999999999999999999999999885
No 95
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.69 E-value=4.8e-08 Score=72.44 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=47.6
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceee--EEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s--~~l~v 698 (716)
|.|.+.| .+.|+|+|..+.... ......|.|.++.++|+|.|.|.|.|.+|....+ ..|.|
T Consensus 3 L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 3 LRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred EEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 6787777 799999999876542 1122579999999999999999999999987544 44444
No 96
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.68 E-value=7.2e-07 Score=81.19 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=81.9
Q ss_pred CCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEe-----ccCC
Q psy7040 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-----GEPI 455 (716)
Q Consensus 381 ~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~-----~~p~ 455 (716)
...+.|.++...+.+.|.|.|.|..|....+ ....+.. + .....+..|..+.|.|.+. +.|.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~---i~L~V~~---~-------~~~~~~~~G~~v~L~C~~~~~~~~~~p~ 163 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEEST---IRLTFDS---G-------TINYQFNSGKDSKLHCYGTDGISSTFKD 163 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEE---EEEEEec---C-------CccceEecCCCEEEEeeCCCCccccCCC
Confidence 4678999999999999999999976542211 1111111 1 1235677899999999875 3467
Q ss_pred CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 456 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
+.+.|++++..+....++.+.. ....|.|.++..+|.|.|+|.|....
T Consensus 164 p~I~WyKng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 164 YTLTWYKNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred ceEEEEECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 8999999999987666655443 34589999999999999999998754
No 97
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.68 E-value=3e-07 Score=73.00 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=60.9
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc----CCcEEE-EeCCCeEEEEEC--CCCCCCceeEEEEEEcCC
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS----KDRFKI-VNDDKSTKLKVF--DSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----~~~~~~-~~~~~~~~l~i~--~l~~~~~~~y~~~a~n~~ 505 (716)
+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+.. .....+ ...+....+.+. .+...|.|.|+|.|.|..
T Consensus 8 p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~ 87 (100)
T cd07693 8 PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSL 87 (100)
T ss_pred CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccc
Confidence 4568899999999999999999999999999988764 122222 222322333332 346899999999999999
Q ss_pred Cc-eeeEEEEEE
Q psy7040 506 GT-DKGTAKVTV 516 (716)
Q Consensus 506 g~-~~~s~~~~v 516 (716)
|. .+..+.+.+
T Consensus 88 G~~~s~~~~l~v 99 (100)
T cd07693 88 GEAVSRNASLEV 99 (100)
T ss_pred cceecceEEEEe
Confidence 98 455555544
No 98
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.68 E-value=3.6e-07 Score=70.43 Aligned_cols=81 Identities=26% Similarity=0.520 Sum_probs=61.4
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEe-CCeEeccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCCCc-eee
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKG 510 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~-~~~ 510 (716)
....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+.. ......|+|.++.++|.|.|+|.|.|..|. ...
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 3477899999999999999975 999997 555554444444433 335578999999999999999999998654 455
Q ss_pred EEEEE
Q psy7040 511 TAKVT 515 (716)
Q Consensus 511 s~~~~ 515 (716)
++.+.
T Consensus 87 sv~l~ 91 (92)
T cd04977 87 TVNLK 91 (92)
T ss_pred EEEEE
Confidence 55443
No 99
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.68 E-value=1.3e-07 Score=69.30 Aligned_cols=69 Identities=26% Similarity=0.359 Sum_probs=56.3
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.|.|.+.|.|.|.+.|++++..+... +.. .......|.|.++...|.|.|+|.|.|..|....+..+.|
T Consensus 2 ~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 2 LLECIAEGLPTPEISWIKIGGELPAD-RTK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEEEEeeEecCCeEEEEECCeECCCC-cee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 68999999999999999998776432 222 2234558999999999999999999999998888777765
No 100
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.67 E-value=7.2e-08 Score=71.46 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=50.6
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++.+.|+|.|+|.|.|..|.....+.|.|
T Consensus 6 l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 6 LDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6777777 799999998876531 112367999999999999999999999999988888876
No 101
>KOG3515|consensus
Probab=98.67 E-value=1e-05 Score=84.11 Aligned_cols=308 Identities=13% Similarity=0.007 Sum_probs=157.2
Q ss_pred EEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCC-CeEEEEe
Q psy7040 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLC 462 (716)
Q Consensus 384 ~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~-~~~~W~~ 462 (716)
..+..+.......|.|.|-+.......+.. ....+..+|.+.......+...+.+.......+.+.|. +.+.|..
T Consensus 363 ~~~q~~~~~~~g~v~c~a~~~~~~~~sss~----~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~ 438 (741)
T KOG3515|consen 363 HYAQPSSQQDGGQVTCPADNLELAHSSSSS----FLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF 438 (741)
T ss_pred eeecccchhcCceEEccccccccccccccc----eeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee
Confidence 344445555667888888776633222211 11122224444433333444445554444444444444 4688999
Q ss_pred CCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-EEEEEE-eCCC--CCCCCceeeEE
Q psy7040 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-GCSLKW-NPPE--DDGGAPIEYYM 538 (716)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-~v~l~W-~~p~--~~~~~~i~~y~ 538 (716)
.+..+.......+............++...+.|.|.|.|.|..|.........+. +..+.= +.+. ..++.....+.
T Consensus 439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~ 518 (741)
T KOG3515|consen 439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECM 518 (741)
T ss_pred cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceee
Confidence 9888876666554444444444456688889999999999999988766554433 000000 0000 11111111222
Q ss_pred EEEEecCCCceeeeEEEccceee-------eeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCC--
Q psy7040 539 VEKMETDTGKVLIKWIRTNDKRV-------TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS-- 609 (716)
Q Consensus 539 v~~~~~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~-- 609 (716)
..-.+... --..|.+.+.... ..........+.+.+-.....|.+.|.+.+..-.+.....+.+..++.
T Consensus 519 q~~~~~~~--~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~ 596 (741)
T KOG3515|consen 519 QDEQPQDQ--QMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVT 596 (741)
T ss_pred ccccccch--hhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEeccccccc
Confidence 21111111 0134444333221 111112235677777777788899999888222223333333332222
Q ss_pred --CCccceeeccceeEEEEEEeeEEEEeeeeccCcee----eEEEEeCCeEeeec----------ccceeeEEEEccCCC
Q psy7040 610 --APEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL----ESQYLMNDKRVTID----------NVDYFTKITIRPLQR 673 (716)
Q Consensus 610 --~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~----~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~ 673 (716)
.|. +..-....+. ...+|.+.+ .+.|.++......+ .........|.+...
T Consensus 597 ~~tp~-~~~~~~g~v~------------as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 663 (741)
T KOG3515|consen 597 VRTPN-MYTAQEGCVN------------ASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHID 663 (741)
T ss_pred ccCCc-eeeeccCccc------------ccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcc
Confidence 111 1111111111 125664444 77888876543222 111123445556666
Q ss_pred CCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEEEE
Q psy7040 674 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWM 713 (716)
Q Consensus 674 ~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~~~ 713 (716)
.+.|...|.+.|..|.+..+..+. .+..|.+|+.+.|
T Consensus 664 ~~~y~~~c~t~n~lg~~~v~~~~~---~~t~~~~~~n~~~ 700 (741)
T KOG3515|consen 664 GSDYENGCTTQNLLGSDHVSGAIH---SGTASVGPINLTY 700 (741)
T ss_pred hhhhcceeeecccCCCccccceec---CCcCCCCccceEe
Confidence 677779999999999987766544 4556666666654
No 102
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.67 E-value=5e-08 Score=74.49 Aligned_cols=62 Identities=18% Similarity=0.022 Sum_probs=50.6
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|++++..+... .......|.|.++.++|.|.|+|.|.|..|....++.|.|+
T Consensus 21 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 21 LECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 7777777 89999998766443 11122579999999999999999999999999999988874
No 103
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.66 E-value=7.5e-08 Score=75.08 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=50.7
Q ss_pred eccCcee-----eEEEEeCCeEeeeccc-----------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|+|+|..+..... .....|.|..+.++|+|.|+|.|.|..|..+.++.|.|.
T Consensus 23 L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 23 LVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 5555555 7999999998875411 123779999999999999999999999999999998886
No 104
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.66 E-value=7.2e-08 Score=71.25 Aligned_cols=62 Identities=19% Similarity=0.086 Sum_probs=51.1
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| ++.|+++|+++.... ......+.|.++.+.|+|.|+|.|.|..|....++.|.|.
T Consensus 6 l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 6 LICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred EEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 6777777 999999999885431 1112478999999999999999999999999999998873
No 105
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.65 E-value=3.6e-07 Score=70.71 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=54.4
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCcee
Q psy7040 440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDK 509 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~ 509 (716)
.|..+.|.|.+.|.|.|.+.|++++..+.......+...+ ..|.|.++. +.|.|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 4688999999999999999999999988644333333222 368888874 6999999999999999764
No 106
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.64 E-value=6.4e-08 Score=70.21 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=49.0
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 3 FQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 6777777 89999997765433 1112368999999999999999999999999988887764
No 107
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.62 E-value=9.7e-08 Score=70.14 Aligned_cols=61 Identities=18% Similarity=0.060 Sum_probs=49.9
Q ss_pred eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 6 L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 6 IECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6677666 89999999887544 1112257999999999999999999999999999888875
No 108
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.62 E-value=1.8e-07 Score=71.85 Aligned_cols=76 Identities=28% Similarity=0.379 Sum_probs=56.8
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCC----eEeccC--CcEEEEe-------CCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCND----ITIISK--DRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
|..+.|.|.+.+.|.|.+.|++++ ..+... ....+.. .+....|.|.++.++|.|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 467899999999999999999964 222111 1111111 123457999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
...++.+.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888776
No 109
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.62 E-value=4.9e-07 Score=68.78 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=58.5
Q ss_pred eEEEEEEEeccCCC--eEEEEeCCeEeccCC---cEE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 443 NFEFDINVIGEPIP--TKEWLCNDITIISKD---RFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 443 ~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.+.|.|.+.+.|.+ .+.|++++..+.... .+. .........|.|.+++..|.|.|+|.|.|..|....++.+.|
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 81 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence 46899999999987 568999998875322 222 222234568999999999999999999999998888877776
Q ss_pred E
Q psy7040 517 L 517 (716)
Q Consensus 517 ~ 517 (716)
.
T Consensus 82 ~ 82 (85)
T cd04970 82 R 82 (85)
T ss_pred E
Confidence 4
No 110
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.62 E-value=8.6e-08 Score=70.92 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=48.6
Q ss_pred eccCcee----eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .++|+++|...... .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus 3 l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 3 LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred eEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 6788888 79999988642211 1112257999999999999999999999999998888887
No 111
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.61 E-value=1.7e-07 Score=69.57 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=49.9
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCC----CCceeEEEEEEcCCCceee
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~----~~~~~y~~~a~n~~g~~~~ 510 (716)
.|.|.+.|.|.|.+.|++++..+.......+........|.|..+.. +|.|.|+|.|.|..|....
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 2 VIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 68899999999999999999887543222233333345788888754 6899999999999997543
No 112
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.61 E-value=1.8e-07 Score=69.47 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=52.3
Q ss_pred eccCcee----eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
|.|.+.| .+.|++++..+.... ......|.|.++...|.|.|+|.|.|..|....++.|.|..
T Consensus 3 L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 3 LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred eEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 6677777 899999998876441 12225799999999999999999999999999999998863
No 113
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.61 E-value=1.3e-07 Score=73.08 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=49.0
Q ss_pred eccCcee----eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+.... .+....|.|.++...|+|.|+|.|.|..|.......|.|
T Consensus 21 L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 21 LTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 5566555 899999998876531 122357999999999999999999999999988887764
No 114
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.61 E-value=4e-07 Score=69.70 Aligned_cols=73 Identities=25% Similarity=0.444 Sum_probs=60.4
Q ss_pred ccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040 434 SDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~ 509 (716)
..+.+..|+.+.|.|.+ .+.|.+.+.|++++..+... .++.+.. ...|.|.++.+.|.|.|+|.|.|..|...
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 45778899999999998 79999999999999887653 3343332 34799999999999999999999999754
No 115
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.60 E-value=4.5e-07 Score=65.24 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=50.6
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
.|.|.+.|.|.|.+.|++++..+..... ..... ..+|.|.++..+|.|.|+|.|.|........
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYHVD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCc-EEEeC--CCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 6899999999999999999988765422 22222 3479999999999999999999986554443
No 116
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.60 E-value=2.4e-07 Score=73.91 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=54.1
Q ss_pred eccCcee----eEEEEeCCeEeeeccc-----------ceeeEEEEccCC-CCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV-----------DYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~-----------~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
|.|.+.| .+.|+++|..+..... .....|.|.++. ..|.|.|+|.|.|..|....+..|.+..+
T Consensus 28 L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~ 107 (109)
T cd05773 28 LVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSR 107 (109)
T ss_pred EEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCC
Confidence 7777777 8999999988753211 112579999997 68999999999999999999999999987
Q ss_pred CC
Q psy7040 702 PS 703 (716)
Q Consensus 702 p~ 703 (716)
|.
T Consensus 108 p~ 109 (109)
T cd05773 108 PD 109 (109)
T ss_pred CC
Confidence 74
No 117
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.59 E-value=1.1e-07 Score=69.77 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=49.5
Q ss_pred eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus 3 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 3 LECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5677777 89999998766443 1223368999999999999999999999999988888876
No 118
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.58 E-value=2.8e-07 Score=70.98 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=62.6
Q ss_pred cEEEecCCeEEEEEEEec-----cCCCeEEEEeCCeEeccC--CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 435 DIKVRAGSNFEFDINVIG-----EPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~-----~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ...++... ...|.|.++.++|+|.|.|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 456778999999999998 688899999998654321 22233222 347999999999999999999999998
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
...++.+.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 888776653
No 119
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.58 E-value=5.9e-07 Score=70.06 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=58.6
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc--EEEEeCCCeEEEEECCC-----CCCCceeEEEEEEcC-C
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS-----KRGDSGIYTLAVKNS-W 505 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l-----~~~~~~~y~~~a~n~-~ 505 (716)
.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..... +.+... ..+.|.++ .+.|.|.|+|.|.|. .
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 456778899999999999999999999999988865433 222222 24555555 688999999999999 8
Q ss_pred Cce-eeEEEE
Q psy7040 506 GTD-KGTAKV 514 (716)
Q Consensus 506 g~~-~~s~~~ 514 (716)
|.. +..+.+
T Consensus 84 G~~~s~~~~l 93 (95)
T cd05722 84 GSIVSRTARL 93 (95)
T ss_pred CcEEEeeeEE
Confidence 876 334444
No 120
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.57 E-value=6e-07 Score=66.67 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=55.8
Q ss_pred cccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
+.++.+..|+.+.|.|.+.|.|.| .+.|++++..+... .......|.|.++. +.|.|.|.|.|..|....
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 446789999999999999999999 79999999887531 11223478888874 679999999999996543
No 121
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.57 E-value=4e-07 Score=68.77 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=55.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeE---e-ccCCcE--EEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDIT---I-ISKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~---~-~~~~~~--~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
|+.+.|.|.+.+.|.|.+.|+++... . ...... .+. ......|.|.++.+.|.|.|.|.|.|..|.....+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 56789999999999999999997421 1 011110 111 1124589999999999999999999999998887776
Q ss_pred EE
Q psy7040 515 TV 516 (716)
Q Consensus 515 ~v 516 (716)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 53
No 122
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.57 E-value=3.4e-07 Score=67.69 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=48.4
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCC----CceeEEEEEEcCCCceee
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG----DSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~----~~~~y~~~a~n~~g~~~~ 510 (716)
.|.|.+.|.|.|.+.|++++..+.......+........|.|..+... |.|.|+|.|.|..|....
T Consensus 2 ~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 2 VIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred EEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 689999999999999999998764332222233233346777776643 689999999999997654
No 123
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.57 E-value=2.4e-07 Score=71.40 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=49.4
Q ss_pred eccCcee----eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 20 l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 20 IRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 5666666 999999998775431 122368999999999999999999999999998888764
No 124
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.57 E-value=1.8e-07 Score=69.55 Aligned_cols=61 Identities=18% Similarity=0.012 Sum_probs=51.1
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++...|.|.|+|.|.|..|...+++.|.|
T Consensus 6 l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 6 LDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6777777 799999998876542 222378999999999999999999999999999888876
No 125
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.57 E-value=1.7e-07 Score=71.50 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=49.7
Q ss_pred eccCcee----eEEEEeCCeEeeeccc-------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV-------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~-------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+..... .....|.|.++.+.|+|.|+|.|.|..|....++.|.|
T Consensus 14 L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 14 FRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred EEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 6676666 8999999998865421 11246899999999999999999999999998888865
No 126
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.56 E-value=6.4e-07 Score=66.79 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=58.9
Q ss_pred eEEEEEEEec--cCCCeEEEEeCCeEecc---CCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 443 NFEFDINVIG--EPIPTKEWLCNDITIIS---KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 443 ~~~~~~~v~~--~p~~~~~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
.+.|.|.+.. .+.+.+.|++++..+.. ..++..... .....|.|.++...|.|+|+|.|.|..+..+.++.+.|
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V 81 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV 81 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence 4688999976 45778999999999852 223433221 23458999999999999999999999999999988877
Q ss_pred E
Q psy7040 517 L 517 (716)
Q Consensus 517 ~ 517 (716)
.
T Consensus 82 ~ 82 (85)
T cd05853 82 R 82 (85)
T ss_pred e
Confidence 5
No 127
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.56 E-value=2.5e-07 Score=72.28 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=51.3
Q ss_pred eccCcee----eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
|.|.+.| .+.|+++|..+... .......|.|.++...|.|.|+|.|.|..|....+..|.|..
T Consensus 23 L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 23 LACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 5566666 89999999877553 112235799999999999999999999999999999998865
No 128
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.53 E-value=3.1e-07 Score=67.54 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=48.5
Q ss_pred eccCcee----eEEEEeCCeEeeec-----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++...|+|.|+|.|.|..|.. +.++.|.|
T Consensus 3 l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 3 MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 6787777 79999999877632 11223579999999999999999999999985 66777766
No 129
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.52 E-value=6.3e-07 Score=66.24 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=48.6
Q ss_pred EEEEEEeccCCCeEEEEeCCeEec--cCCcEEEEeCCCeEEEEECCCC---C-CCceeEEEEEEcCCCceeeE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSK---R-GDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~---~-~~~~~y~~~a~n~~g~~~~s 511 (716)
.|.|.+.|.|.|.+.|++++..+. ...++.+... ...|.|..+. + ++.|.|+|.|.|..|.....
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~--~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRR--SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred EEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCC--CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 689999999999999999998653 3344444322 3478887653 2 46899999999999976443
No 130
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.51 E-value=2.3e-06 Score=66.30 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=52.4
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceee
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~ 510 (716)
|+.+.|.|.+.+.|.+.+.|++++..+.......+... ...|.|.++. ..|.|.|+|.|.|..|....
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 45799999999999999999999988864332222222 2368887765 58999999999999997643
No 131
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.50 E-value=2.3e-07 Score=69.23 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=47.3
Q ss_pred eccCcee---eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL---ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~---~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.+ .+.|+|+|.++..+. .-....|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus 14 l~C~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 14 LRCRLRDDVQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEEEecCCCceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 4555554 789999998876541 111257999999999999999999999999887776654
No 132
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.50 E-value=3.5e-07 Score=70.68 Aligned_cols=61 Identities=20% Similarity=0.360 Sum_probs=46.1
Q ss_pred eccCcee-----eEEEEe-CCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCC-CCceeeEEEEE
Q psy7040 638 SLMPISL-----ESQYLM-NDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQ-GKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~-~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~-G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++ +++.+.... ......|.|.++.+.|+|.|+|.|.|.+ |....++.|.|
T Consensus 20 l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 20 FLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 4555544 789997 776554421 1123689999999999999999999997 88888888776
No 133
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.50 E-value=1.4e-06 Score=67.03 Aligned_cols=66 Identities=23% Similarity=0.446 Sum_probs=52.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEecc-CCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCceee
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~~ 510 (716)
+..+.|.|.+.|.|.|.+.|++++..+.. ..++.+. ...|.|.++. ..|.|.|.|.|.|..|....
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 34799999999999999999999988753 3344332 2378998885 68999999999999997643
No 134
>KOG0613|consensus
Probab=98.48 E-value=4e-06 Score=90.76 Aligned_cols=458 Identities=18% Similarity=0.212 Sum_probs=247.5
Q ss_pred CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCcc
Q psy7040 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGE 135 (716)
Q Consensus 56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~ 135 (716)
.|+.+-....+....+...|..+..+++..+..|.|+.+..+...|..........-.+..+. |.++|+++-..|+
T Consensus 141 ~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~----~e~~v~~v~s~gq 216 (1205)
T KOG0613|consen 141 PPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH----YESRVRAVVSAGQ 216 (1205)
T ss_pred CCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc----cceeEEEEEecCC
Confidence 344444555677788999999999889999999999999988888877665443333444444 4445554444443
Q ss_pred CCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEE
Q psy7040 136 SEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEV 215 (716)
Q Consensus 136 ~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~ 215 (716)
..+.........
T Consensus 217 p~~~~~~~~~g~-------------------------------------------------------------------- 228 (1205)
T KOG0613|consen 217 PEPLERWEILGE-------------------------------------------------------------------- 228 (1205)
T ss_pred Cccchhhhhccc--------------------------------------------------------------------
Confidence 332211110000
Q ss_pred EEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEe-CCCCCeEEccccCcccceEEEcCCCCCCeE
Q psy7040 216 EVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD-EATGRWTPAGETEGPVTGLEVEGLIPNHKY 294 (716)
Q Consensus 216 ~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y 294 (716)
+..+...+.. -.........+.+.|..+..+....+.+|.++... .+...|...........+.+...-..+-.+
T Consensus 229 ---~i~~~~~~~~-s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~ 304 (1205)
T KOG0613|consen 229 ---LIAPGSAPSM-SVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQD 304 (1205)
T ss_pred ---ccCCCCcccc-ccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCccc
Confidence 0012222222 11122233345566665444333334444444333 333344443333334455555555666677
Q ss_pred EEEEEEEcCCCCCCCCcccceEEec-CCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEE
Q psy7040 295 KFRVRAVNKQGKSEPLTTTASIEAK-NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373 (716)
Q Consensus 295 ~~~v~a~n~~g~~~~~~~~~~~~~~-~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~ 373 (716)
.+++...-..|.+.+........+. .+...+..+.++.+.....+.+++.|.-+...-.....+|...-....+..|..
T Consensus 305 ~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 384 (1205)
T KOG0613|consen 305 RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP 384 (1205)
T ss_pred ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccc
Confidence 7777776666655444433222221 222333456667777777888999998754433333566666655555555655
Q ss_pred EeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEecc
Q psy7040 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE 453 (716)
Q Consensus 374 ~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~ 453 (716)
..........+.+.++.++..|.++|.|.|..|.........+........++.+.........+...+.+...|.+...
T Consensus 385 ~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~ 464 (1205)
T KOG0613|consen 385 CPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSST 464 (1205)
T ss_pred cccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCc
Confidence 55556677888999999999999999999999987666655544443333333332221122222233556667777666
Q ss_pred CCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE-----EEEEEEeCC
Q psy7040 454 PIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-----GCSLKWNPP 526 (716)
Q Consensus 454 p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-----~v~l~W~~p 526 (716)
+.+ .++|.+++... .........+...++.+.-..+.+.+.|........|....+...... .-...|..+
T Consensus 465 ~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~ 542 (1205)
T KOG0613|consen 465 SMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKPIHTQE 542 (1205)
T ss_pred cccceeEeeccCCccc--ccccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcccccccc
Confidence 644 45566655443 222222222334456666566666677765555444433222221111 111223332
Q ss_pred CCCCCCceeeEEEEEEecCCC--------ceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCcc
Q psy7040 527 EDDGGAPIEYYMVEKMETDTG--------KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV 598 (716)
Q Consensus 527 ~~~~~~~i~~y~v~~~~~~~~--------~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~ 598 (716)
... +.+...|...+.+.... .....|....... .++..+.++.++..|.+++.+.+..|++.+
T Consensus 543 ~~~-g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~--------gtt~t~~~~~p~~~~~~t~~~k~~~gE~~p 613 (1205)
T KOG0613|consen 543 NQP-GTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRP--------GTTETIGSILPGHEYHVTIKAKNELGESRP 613 (1205)
T ss_pred cCC-CCcccccCCCcccccccchhhhhhhhhccCCcccccCC--------CcccccccccccccceeehhhhhcccccCC
Confidence 221 22233333222222100 0001111111111 288889999999999999999999999988
Q ss_pred ce
Q psy7040 599 FI 600 (716)
Q Consensus 599 s~ 600 (716)
+.
T Consensus 614 s~ 615 (1205)
T KOG0613|consen 614 SS 615 (1205)
T ss_pred CC
Confidence 84
No 135
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.48 E-value=4.1e-07 Score=69.78 Aligned_cols=62 Identities=18% Similarity=0.050 Sum_probs=50.0
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus 21 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 21 LECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 6666666 89999987765443 11234789999999999999999999999999999888773
No 136
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.46 E-value=3.6e-07 Score=69.39 Aligned_cols=61 Identities=21% Similarity=0.154 Sum_probs=49.1
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+... .......|.|.++...|.|.|+|.|.|..|....++.|+|
T Consensus 19 l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 19 WECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred EEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 5555555 89999999987653 1223368999999999999999999999999988888764
No 137
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.45 E-value=4.9e-07 Score=67.06 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=45.5
Q ss_pred eccCcee-----eEEEEeCCeEeeeccc---------ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDNV---------DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~~---------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~ 695 (716)
|.|.+.| .+.|+++|+++..... .....|.|.++...|.|.|+|.|.|..|....+++
T Consensus 3 l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 3 LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 4455544 7899999988765421 12368999999999999999999999999877664
No 138
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.45 E-value=9.9e-07 Score=67.99 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=44.0
Q ss_pred eEEEEeCCeEeeecc-------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTIDN-------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~-------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|++++..+..+. ......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 32 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 32 EVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred eEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 789999988765431 112247999999999999999999999999988887764
No 139
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.45 E-value=2.9e-06 Score=65.66 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=61.2
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCe--------EeccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEc
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--------TIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN 503 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--------~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n 503 (716)
+.++.+.+|+.+.|.|.+.+.|.+.+.|++.+. ......++.+... .....|.|.++.+.|.|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 457889999999999999999999999986432 1223445554333 3557899999999999999999998
Q ss_pred CCCceeeEEEEE
Q psy7040 504 SWGTDKGTAKVT 515 (716)
Q Consensus 504 ~~g~~~~s~~~~ 515 (716)
..+. ..++.+.
T Consensus 84 ~~~~-~~~~~l~ 94 (95)
T cd07701 84 MPVK-TSKAYLT 94 (95)
T ss_pred ecCc-cEEEEEE
Confidence 5443 4444443
No 140
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.44 E-value=1.4e-06 Score=66.05 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=57.7
Q ss_pred CCeEEEEEEEecc--CCCeEEEEeCCeEeccCCc----EE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 441 GSNFEFDINVIGE--PIPTKEWLCNDITIISKDR----FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 441 g~~~~~~~~v~~~--p~~~~~W~~~~~~~~~~~~----~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
|+.+.|.|.+.+. |.+.+.|.+++........ .. .........|.|.++.+.|.|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 5678999999999 8889999987765432111 00 011123568999999999999999999999999988887
Q ss_pred EEE
Q psy7040 514 VTV 516 (716)
Q Consensus 514 ~~v 516 (716)
+.+
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 141
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.44 E-value=1.9e-06 Score=63.87 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=54.2
Q ss_pred EEEEEEe-ccCCCeEEEEeCCeEeccC----CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 445 EFDINVI-GEPIPTKEWLCNDITIISK----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 445 ~~~~~v~-~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.|.|.+. +.|.+.+.|++++..+... .++.+........|.|.++...|.|.|+|.|.|..|....++.
T Consensus 2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 5789876 4677899999999887532 2234444455678999999999999999999999998777654
No 142
>KOG4802|consensus
Probab=98.43 E-value=6.7e-06 Score=76.82 Aligned_cols=180 Identities=19% Similarity=0.274 Sum_probs=113.6
Q ss_pred CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEE------------EEeCCCCCeEEccccCcccceEEEcCCCC
Q psy7040 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD------------KMDEATGRWTPAGETEGPVTGLEVEGLIP 290 (716)
Q Consensus 223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~------------~~~~~~~~~~~~~~~~~~~~~~~i~~L~p 290 (716)
+.+|.+.+........++.+.|..-. .+.-|.+. -.......|..+... .....+...++.|
T Consensus 145 ~l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t-~~e~~~~~t~~rP 218 (516)
T KOG4802|consen 145 QLPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKT-MEENTYIFTDMRP 218 (516)
T ss_pred CCCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeec-CCCceeeeeecCc
Confidence 34444434444556667888888411 12212111 122234466666554 2345888899999
Q ss_pred CCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCC---eEEEEecCCCCCCCccceEEEEEEeecC
Q psy7040 291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD---FVELAWTPPEQNGGSPIVGYIIEKKEKY 367 (716)
Q Consensus 291 ~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~---~i~l~W~~p~~~~~~~i~~y~v~~~~~~ 367 (716)
|.-|.|+|.|+|..|.-..+.++..+.......+|.+|.++.+..+..+ ...|-|.|+..+ -++..|+|.|.-.-
T Consensus 219 gRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws~~v 296 (516)
T KOG4802|consen 219 GRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWSLYV 296 (516)
T ss_pred ceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEeehhh
Confidence 9999999999999887666666655655555677888999887765332 256778875543 37999999996432
Q ss_pred -C-CceE-EEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040 368 -S-PIWE-KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410 (716)
Q Consensus 368 -~-~~~~-~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~ 410 (716)
+ .... ...........+.|.+|.|+..|.+.|.|....|.+..
T Consensus 297 ~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 297 NSAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred hhhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 1 0000 00001112223449999999999999999998887643
No 143
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.42 E-value=5.1e-07 Score=68.43 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=47.9
Q ss_pred eccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus 14 L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 14 LKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred EEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 5555554 78999999877543 1122368999999999999999999999999888877764
No 144
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.42 E-value=4.1e-06 Score=63.97 Aligned_cols=80 Identities=30% Similarity=0.351 Sum_probs=63.7
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEE-EeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
+.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++.++|.|.|.|.+.|..|....+..+
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 3466789999999999999999999999988764433322 223345679999999999999999999999987776665
Q ss_pred E
Q psy7040 515 T 515 (716)
Q Consensus 515 ~ 515 (716)
.
T Consensus 84 ~ 84 (85)
T cd05729 84 D 84 (85)
T ss_pred e
Confidence 4
No 145
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.41 E-value=6.9e-07 Score=66.26 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=45.1
Q ss_pred eccCcee-----eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~ 695 (716)
|.|.+.+ .+.|+++|+.+.... ......|.|.++...|+|.|+|.|.|..|....++.
T Consensus 3 L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 3 LRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 5565543 789999998875321 123367999999999999999999999998877664
No 146
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.41 E-value=1.9e-06 Score=64.46 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=49.8
Q ss_pred EEEEEEeccCCCeEEEEeCCeEec--------cCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce-eeEEEE
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKV 514 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~-~~s~~~ 514 (716)
.|.|.+.|.|.|.+.|++++.... ...++.+. ...+|.|.++.+.|.|.|.|.|.|..|.. +.++.+
T Consensus 2 ~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 2 TLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred EeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 689999999999999999753211 12233332 23479999999999999999999999976 344443
No 147
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.41 E-value=7.3e-07 Score=64.15 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=44.8
Q ss_pred eccCcee----eEEEEeCCeEeeecc--cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~--~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
|.|.+.| .+.|++++..+.... ......|.|.++. +.|.|+|.|.|..|....++.|
T Consensus 6 L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 6 LTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred EEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 7788888 999999998875541 1122468898875 7899999999999998887765
No 148
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.41 E-value=6.3e-07 Score=69.39 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=51.4
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+..+ .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 20 l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 20 LECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 5555555 89999999998875 2235589999999999999999999999999998888876
No 149
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.40 E-value=1.1e-06 Score=67.14 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=44.4
Q ss_pred eccCcee---eEEEEe-CCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy7040 638 SLMPISL---ESQYLM-NDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~---~~~W~~-~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v 698 (716)
|.|.+.| .+.|++ ++..+..+ ..+....|.|.++...|+|.|+|.|.|..|.. ..+..|.+
T Consensus 20 l~C~~~G~P~~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 20 FTCTAIGEPESIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEEEEeCCeEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 5555555 789998 56665543 11222489999999999999999999999986 55555554
No 150
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.40 E-value=3.5e-06 Score=63.57 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=55.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCC----cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC--ceeeEEEE
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG--TDKGTAKV 514 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g--~~~~s~~~ 514 (716)
|+.+.|.|.+.+.|.+.+.|.+++....... ...+........|.|.++.++|+|.|.|.|.|..+ ....++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 5678999999999999999998775432111 11111122356899999999999999999999876 55566655
Q ss_pred EE
Q psy7040 515 TV 516 (716)
Q Consensus 515 ~v 516 (716)
+|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 54
No 151
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.39 E-value=1.1e-06 Score=68.09 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=47.3
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
|.|.+.| .+.|+++|..+..+ .......|.|.++...|.|.|+|.|.|..|....+..|
T Consensus 23 L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 23 FSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 5666666 79999999877543 12223689999999999999999999999998877765
No 152
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.39 E-value=8e-07 Score=66.18 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=47.4
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++...|.|.|+|.|.|..|.....+.+.+
T Consensus 6 l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 6 FTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred EEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 5666666 89999998766443 1123368999999999999999999999999876665554
No 153
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.38 E-value=1.2e-06 Score=68.49 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=48.3
Q ss_pred eccCcee----eEEEEeCCeEeeecc-----------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN-----------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~-----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+.... ......|.|.++...|.|.|+|.|.|..|....+..|.|
T Consensus 22 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 22 LTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 6676666 899999887654321 112257999999999999999999999999998888765
No 154
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.38 E-value=1.1e-06 Score=67.66 Aligned_cols=66 Identities=20% Similarity=0.123 Sum_probs=51.7
Q ss_pred eccCcee----eEEEEeCCeEeee--------c---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040 638 SLMPISL----ESQYLMNDKRVTI--------D---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~--------~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p 702 (716)
|.|.+.| .+.|+++|..+.. . .......|.|.++...|+|.|.|.|.|..|.....+.|.|....
T Consensus 6 L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 85 (90)
T cd05726 6 FQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI 85 (90)
T ss_pred EEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence 6777776 7999998864310 1 01112579999999999999999999999999999999999754
Q ss_pred C
Q psy7040 703 S 703 (716)
Q Consensus 703 ~ 703 (716)
.
T Consensus 86 ~ 86 (90)
T cd05726 86 A 86 (90)
T ss_pred c
Confidence 4
No 155
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.38 E-value=9.7e-07 Score=67.63 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=42.3
Q ss_pred eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEEE
Q psy7040 645 ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~v 698 (716)
.+.|++++..+.... ......|.|.++...|+|.|+|.|.|..|... ....|.|
T Consensus 33 ~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 33 YIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 789999998775431 12235899999999999999999999999864 3555655
No 156
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.37 E-value=7.2e-06 Score=62.97 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=64.7
Q ss_pred cccEEEecCCeEEEEEEEeccCCC-eEEEEeCCeEecc--CCcEEEEeC----CCeEEEEECCCCCCC-ceeEEEEEEcC
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIIS--KDRFKIVND----DKSTKLKVFDSKRGD-SGIYTLAVKNS 504 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~-~~~W~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~l~~~~-~~~y~~~a~n~ 504 (716)
.....+..|+.+.|.|.+.+.|.| .+.|...+..+.. ..++.+... +..+.|.|.++...| .|.|.|.|.|.
T Consensus 8 ~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 8 EQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNS 87 (98)
T ss_pred CceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeC
Confidence 455778899999999999777776 4688777666543 456766554 478899999998766 78999999999
Q ss_pred CCceeeEEEE
Q psy7040 505 WGTDKGTAKV 514 (716)
Q Consensus 505 ~g~~~~s~~~ 514 (716)
.|.+...+.+
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9998776654
No 157
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.36 E-value=1.2e-06 Score=63.07 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=45.9
Q ss_pred eccCcee----eEEEEeCCeEeeeccc---ceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
|.|.+.| .+.|+|+|.++..... ....+|.|.++..+|+|.|+|.|.|....-.....++
T Consensus 3 l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 3 LTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred EEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 6677777 8999999988765411 1225899999999999999999999866655555444
No 158
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.35 E-value=1.4e-06 Score=67.00 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=47.3
Q ss_pred eccCcee----eEEEEeCC----eEeeec---------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040 638 SLMPISL----ESQYLMND----KRVTID---------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 694 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~----~~~~~~---------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~ 694 (716)
|.|.+.| .+.|++++ ..+... .......|.|.++..+|+|.|+|.|.|..|...+++
T Consensus 6 l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa 85 (90)
T cd04974 6 FHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSA 85 (90)
T ss_pred EEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCcccCCE
Confidence 6777777 99999853 222111 011225799999999999999999999999999999
Q ss_pred EEEEe
Q psy7040 695 EVVVT 699 (716)
Q Consensus 695 ~l~v~ 699 (716)
.|.|.
T Consensus 86 ~L~V~ 90 (90)
T cd04974 86 WLTVL 90 (90)
T ss_pred EEEeC
Confidence 99873
No 159
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.34 E-value=7.1e-06 Score=63.85 Aligned_cols=83 Identities=45% Similarity=0.825 Sum_probs=65.0
Q ss_pred CCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEeccc--CCCeEEecCCCCCcEEEEEEEEEecCc
Q psy7040 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEG 134 (716)
Q Consensus 57 p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~~~~g 134 (716)
++..+.+.....+++.|+|+++.... ..+..|.|++.......|..+... ....+.|.+|.|++.|.++|+|.+..|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~ 81 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence 44556777777899999999886433 337889999987665667666654 557899999999999999999999878
Q ss_pred cCCCcc
Q psy7040 135 ESEPLE 140 (716)
Q Consensus 135 ~~~~s~ 140 (716)
.+.++.
T Consensus 82 ~~~~s~ 87 (93)
T cd00063 82 ESPPSE 87 (93)
T ss_pred cCCCcc
Confidence 776554
No 160
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.34 E-value=1.3e-05 Score=61.76 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=56.5
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEeC-CCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
.++.+..|+.+.|.|.+.+.|.+.+.|++++..+ ....++.+... .....|.|.++.+.|.|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 4678999999999999999999999999877532 12344443333 24679999999999999999999983
No 161
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.32 E-value=1.2e-05 Score=62.57 Aligned_cols=86 Identities=41% Similarity=0.739 Sum_probs=66.5
Q ss_pred CCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCC
Q psy7040 326 GKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG 405 (716)
Q Consensus 326 ~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~ 405 (716)
.+|.++.+......++.|.|.++...+ ..+..|.|.+.......|............+.+.+|.+++.|.|+|+|.+..
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 456678888778899999999975443 3577899999876545565554433477889999999999999999999987
Q ss_pred CCCCCCC
Q psy7040 406 GPGEPSD 412 (716)
Q Consensus 406 g~~~~s~ 412 (716)
|.+.++.
T Consensus 81 ~~~~~s~ 87 (93)
T cd00063 81 GESPPSE 87 (93)
T ss_pred ccCCCcc
Confidence 7776554
No 162
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.32 E-value=1.9e-06 Score=67.51 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=47.0
Q ss_pred eccCcee----eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++..+... .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 21 l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 21 LTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 5565555 79999988554422 1122358999999999999999999999999988887764
No 163
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.31 E-value=1.4e-06 Score=64.19 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=46.8
Q ss_pred eccCcee----eEEEEe-CCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLM-NDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~-~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++ ++..+.... .....+|.|..+...|.|.|+|.|.|..|..+.+..|.|
T Consensus 6 l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 6 LRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred EEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6677776 899997 566554331 112367999999999999999999999999887777764
No 164
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.29 E-value=1.5e-05 Score=60.56 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=67.1
Q ss_pred ccEEEecCCeEEEEEEEeccCCCe-EEEEeCCeEeccCCcEEEEeCC-----CeEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
..+.+.+|+.+.|.|.+.+.|.|+ +.|.+++..+.......+.... ....|.|..++..+.|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 457899999999999999999998 9999998766433321122221 3478999999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy7040 508 DKGTAKVTVL 517 (716)
Q Consensus 508 ~~~s~~~~v~ 517 (716)
.+.+..+.+.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888877653
No 165
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.28 E-value=2.6e-06 Score=66.79 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=46.0
Q ss_pred eccCcee----eEEEEeC--CeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMN--DKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~--~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|+++ +..+... .......|.|.++.++|+|.|.|.|.|..|....+..|.|
T Consensus 21 l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 21 LSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 6666666 7999994 4433211 1112357999999999999999999999999988887764
No 166
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.28 E-value=4.9e-06 Score=63.27 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=60.5
Q ss_pred cccEEEecCCeEEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 433 LSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
+..+.+..|+.+.|.|.+.+ .|.+.+.|++++..+... . . .....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~--~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A--M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c--c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 34567899999999999864 688899999988664321 1 1 123489999999999999999999999988877
Q ss_pred EEE
Q psy7040 512 AKV 514 (716)
Q Consensus 512 ~~~ 514 (716)
+.+
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 654
No 167
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.28 E-value=2.3e-06 Score=65.84 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=46.6
Q ss_pred eccCcee----eEEEEeC----CeEeeecc---------------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040 638 SLMPISL----ESQYLMN----DKRVTIDN---------------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 694 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~----~~~~~~~~---------------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~ 694 (716)
|.|.+.| .+.|+++ |..+.... ......|.|.++..+|+|.|+|.|.|..|....++
T Consensus 6 L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a 85 (90)
T cd05858 6 FVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSA 85 (90)
T ss_pred EEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceE
Confidence 6677766 8999984 33332110 01125799999999999999999999999999999
Q ss_pred EEEE
Q psy7040 695 EVVV 698 (716)
Q Consensus 695 ~l~v 698 (716)
.|.|
T Consensus 86 ~L~V 89 (90)
T cd05858 86 WLTV 89 (90)
T ss_pred EEEE
Confidence 8887
No 168
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.26 E-value=2.3e-06 Score=63.41 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=42.2
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCC----CCcEEEEEEEEcCCCCce
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQR----SDTAQYTVTATNSQGKDQ 691 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~----~~~y~y~~~a~n~~G~~~ 691 (716)
|.|.+.| .+.|+++|..+... .......|.|..+.. +|+|.|+|.|.|..|...
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 3 IKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 6788888 89999999887533 112236788888854 689999999999999764
No 169
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.24 E-value=3.1e-06 Score=65.51 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=42.4
Q ss_pred eccCcee----eEEEEeCCeEeeecc----cceeeEEEEccCC-CCCcEEEEEEEEcCCCCce
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN----VDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQ 691 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~----~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~ 691 (716)
|.|.+.| .+.|+++|..+.... ......|.|.++. +.|+|.|+|.|.|..|...
T Consensus 24 l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 24 LNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred EEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 6677777 999999999886431 1122578898885 6999999999999999874
No 170
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.23 E-value=1e-05 Score=62.38 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCC-CCCceeEEEEEEcCCCcee
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDK 509 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~~~y~~~a~n~~g~~~ 509 (716)
+..+.|.|.+.+.|.+.+.|++++..+.......+... ...|.|.++. ..|.|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV--GGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE--CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 35789999999999999999999988743222222222 2368888876 5899999999999999654
No 171
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.22 E-value=4.8e-06 Score=64.16 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=42.0
Q ss_pred eccCcee---eEEEEe-CCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEE
Q psy7040 638 SLMPISL---ESQYLM-NDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~---~~~W~~-~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~ 697 (716)
|.|.+.| .+.|++ ++..+... .......|+|.++..+|+|.|+|.|.|..|. ...+..|.
T Consensus 20 l~C~~~G~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 20 FLCQVIGEPKDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred EEEEeEeeCCeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 4444444 789997 66655432 1122358999999999999999999999754 46666554
No 172
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.20 E-value=5.8e-06 Score=63.67 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=45.2
Q ss_pred eccCcee----eEEEEeCCeEeeec---ccceeeEEEEccCC-CCCcEEEEEEEEcCCCCcee-eEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID---NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQV-FIEV 696 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~---~~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~-s~~l 696 (716)
|.|.+.| .+.|++++..+... .......|.|.++. ..|+|.|+|.|.|..|...+ .+.|
T Consensus 24 l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 24 VNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred EeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 8888888 99999999887532 11122689999985 68999999999999998743 4444
No 173
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.20 E-value=4.9e-06 Score=61.47 Aligned_cols=55 Identities=16% Similarity=0.110 Sum_probs=41.5
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCCC----CcEEEEEEEEcCCCCcee
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQRS----DTAQYTVTATNSQGKDQV 692 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~----~~y~y~~~a~n~~G~~~~ 692 (716)
|.|.+.| ++.|+++|.++... .......|.|..+... |.|.|+|.|.|..|...+
T Consensus 3 l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 3 IQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred EEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 7788888 99999999876432 1122367778777653 789999999999998654
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.19 E-value=3.9e-06 Score=63.32 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=45.8
Q ss_pred eccCcee----eEEEEeCCe---Ee--eec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDK---RV--TID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~---~~--~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|++++. .+ ... .......|.|.++.++|+|.|.|.|.|..|+...++.|+|
T Consensus 6 l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 6 FHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred EEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 6777777 799999632 11 111 0112257999999999999999999999999988888765
No 175
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.19 E-value=1.3e-05 Score=60.03 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=54.8
Q ss_pred cccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccC-CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
+.+..+..|+.+.|.|.+.+ +.+.+.|++++..+..+ .++.+ .. ..|.|.++...|.|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~-~~---~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL-YR---DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE-EC---CcEEEeCCCHHHCEEEEEEEEecc
Confidence 34678999999999999864 67899999999998765 34433 22 269999999999999999998764
No 176
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.19 E-value=1.4e-05 Score=61.17 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=58.9
Q ss_pred EEEecCCeEEEEEEEecc-----CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 436 IKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
..+..|....+.|..... |.+.+.|++++..+........ ....|.|.++..+|.|.|+|.|.|..|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 457788888999977432 5679999999998875543332 3458999999999999999999999887665
Q ss_pred EEEEE
Q psy7040 511 TAKVT 515 (716)
Q Consensus 511 s~~~~ 515 (716)
.....
T Consensus 81 ~~t~t 85 (92)
T cd05757 81 NVTRT 85 (92)
T ss_pred EEEEE
Confidence 54443
No 177
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.19 E-value=1.1e-05 Score=61.93 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC--cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC-ceee
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKG 510 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-~~~~ 510 (716)
..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.... ..++... ...|.|.++.+.|.|.|.|.|.|..+ ....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 3567889999999999987 888999999998765432 1222222 23589999999999999999987654 3344
Q ss_pred EEEEEE
Q psy7040 511 TAKVTV 516 (716)
Q Consensus 511 s~~~~v 516 (716)
+..+.|
T Consensus 81 ~~~l~V 86 (89)
T cd04979 81 TYSLNV 86 (89)
T ss_pred EEEEEE
Confidence 444443
No 178
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.17 E-value=7.2e-06 Score=63.51 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=43.9
Q ss_pred eccCcee----eEEEEeCCeEeeecc----cceeeEEEEccCC-CCCcEEEEEEEEcCCCCcee-eEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDN----VDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQV-FIEV 696 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~----~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~~-s~~l 696 (716)
|.|.+.| .++|+++|..+.... ......|.|.++. ..|.|.|+|.|.|..|...+ .+.|
T Consensus 24 l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 24 LGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred EEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 6677776 899999999886431 1112578888865 69999999999999998743 4433
No 179
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.16 E-value=6.4e-06 Score=60.86 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=41.5
Q ss_pred eccCcee----eEEEEeCCeEeeec------ccceeeEEEEccCCC----CCcEEEEEEEEcCCCCceee
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID------NVDYFTKITIRPLQR----SDTAQYTVTATNSQGKDQVF 693 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~----~~~y~y~~~a~n~~G~~~~s 693 (716)
|.|.+.| .+.|+++|+.+... .......|.|..+.. +|+|.|+|.|.|..|.....
T Consensus 3 l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 3 IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred EEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 6788888 99999999865321 112336788887642 46999999999999977533
No 180
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.14 E-value=7.7e-06 Score=61.99 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=46.4
Q ss_pred eccCcee------eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 638 SLMPISL------ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~------~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
|.|.+.| .+.|.++++.+... .......|.|.++...|+|.|+|.|.|..|..+.+..|.|
T Consensus 6 L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 6 LNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 5555555 48998766543211 1123468999999999999999999999999999988876
No 181
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.13 E-value=8.6e-06 Score=63.85 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=45.8
Q ss_pred eccCcee-----eEEEEeCCeEeeecc-c-----------ceeeEEEEccCCC-CCcEEEEEEEEcCCCCceeeEEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN-V-----------DYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~-~-----------~~~~~~~i~~l~~-~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
|.|.+.| .+.|++++..+.... . .....|.|.++.. ++.|.|+|.|.|..|.....+.|
T Consensus 21 L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 21 VECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 6777766 489999998775431 0 1124799999999 55999999999999998887765
No 182
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.12 E-value=8.7e-06 Score=60.82 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=43.2
Q ss_pred eccCcee----eEEEEeCCeEeee--------c---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTI--------D---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~--------~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~ 697 (716)
|.|.+.| .+.|++++..... . ......+|.|.++..+|+|.|+|.|.|..|.+ +.+..|.
T Consensus 3 l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 3 LNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred eEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 6787777 8999996432110 0 01123689999999999999999999999987 4444444
No 183
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.12 E-value=6.3e-06 Score=63.00 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=45.0
Q ss_pred eccCc-ee----eEEEEeCCeEeeeccc----ceeeEEEEccCCCCCcEEEEEEEEcCCCCce-eeEEEE
Q psy7040 638 SLMPI-SL----ESQYLMNDKRVTIDNV----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVV 697 (716)
Q Consensus 638 ~~~~~-~~----~~~W~~~~~~~~~~~~----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~-~s~~l~ 697 (716)
|.|.+ .| .+.|+++|..+..... .....|.|.++...|.|.|+|.|.|..|... ..+.|.
T Consensus 16 l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 16 LECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 56655 34 7999999988765311 1135799999999999999999999999864 445444
No 184
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.10 E-value=0.057 Score=65.28 Aligned_cols=273 Identities=11% Similarity=0.025 Sum_probs=133.7
Q ss_pred CeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCccccccccc-EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCC
Q psy7040 393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD-IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD 471 (716)
Q Consensus 393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~-~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~ 471 (716)
..|.+.|.|.|..|....+ ..+.+..+..-..|....... .-+..+..+.|...+.--......|..++..-..
T Consensus 1754 G~y~VtVta~N~vss~~~s---~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-- 1828 (2740)
T TIGR00864 1754 GLHLVTMKAFNELGSANAS---EEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-- 1828 (2740)
T ss_pred ceEEEEEEEEcccccccee---EEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc--
Confidence 4699999999999865432 223333222222222111111 1344566677776654323335677765433111
Q ss_pred cEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE----EEEEEEeCCCCCCCCceeeEEEEEEecCCC
Q psy7040 472 RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----GCSLKWNPPEDDGGAPIEYYMVEKMETDTG 547 (716)
Q Consensus 472 ~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~----~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~ 547 (716)
+....++.. ..-.|.+++.|.|..+....+..+.+. .+.|.-.+..-..+. ...+.+.......
T Consensus 1829 -------gk~v~~Tf~---~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~-~v~fsa~l~~GS~- 1896 (2740)
T TIGR00864 1829 -------GKHACMTFP---DAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGE-KVEFQILLAAGSA- 1896 (2740)
T ss_pred -------cceeEEecC---CCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCC-EEEEEEEecCCCc-
Confidence 111122222 123567778999999988888888877 334332111111111 2334443333322
Q ss_pred ceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCccceeec----cceeE
Q psy7040 548 KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL----LTLTD 623 (716)
Q Consensus 548 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~~~~~~----~~~v~ 623 (716)
....|.-.+.... .... ...+. ..-..-..|.++|.|.|..+.+.....+.|.++-..+. +..-. .....
T Consensus 1897 -Vtf~w~fGdgs~~-~~t~--~~t~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~-I~~~c~~~~~~g~~ 1970 (2740)
T TIGR00864 1897 -VNFRLQIGGAAPE-VLQP--GPRFS-HSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQ-IPDCCAAGIATGEE 1970 (2740)
T ss_pred -eEEEEEeCCCCce-eecC--CCeEE-eecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceE-ecCCcccceecCce
Confidence 2234433321111 0000 12222 22233346999999999999888877777655543332 11110 11111
Q ss_pred EEEE---EeeEEEEeeeeccCceeeEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 624 VTWE---ISNYLQELHSSLMPISLESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 624 l~w~---i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
..|. ..|..| .+.|+..-..+..+ ..+...++... ..-.|+.+++|.|..|.......+
T Consensus 1971 ~tF~A~v~~g~~V-----------~f~W~f~~~~~~g~~~~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i 2036 (2740)
T TIGR00864 1971 KNFTANVQRGKPV-----------AFAWTFDLHHLHGDSLVIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQL 2036 (2740)
T ss_pred EEEEEEEecCCce-----------EEEEEeeecccCCCcceeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEE
Confidence 1111 122222 67887442111111 01122344443 344577888999999998777777
Q ss_pred EEecCC
Q psy7040 697 VVTDKP 702 (716)
Q Consensus 697 ~v~~~p 702 (716)
+|+.+.
T Consensus 2037 ~VQ~~i 2042 (2740)
T TIGR00864 2037 EAQDAL 2042 (2740)
T ss_pred EEEehe
Confidence 777644
No 185
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.10 E-value=5.3e-06 Score=63.08 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=43.1
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
.+.|++++..+..........|.|.++.++|+|.|.|.|.|..|...+++.|
T Consensus 33 ~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 33 TLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 7899998876543333334689999999999999999999999999888765
No 186
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.09 E-value=7.4e-06 Score=63.11 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=42.7
Q ss_pred eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|+|++..+... .......|.|.++..+|+|.|.|.|.|..|..+.++.|+|
T Consensus 35 ~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 35 NLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred eEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 78999998654321 1112357999999999999999999999999988888765
No 187
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.09 E-value=8.8e-06 Score=60.43 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=38.4
Q ss_pred eccCcee-----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~ 691 (716)
|.|.+.| ++.|+++|..+..........|.|.++. |.|.|.|.|.|..|...
T Consensus 18 l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 18 LTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT 74 (81)
T ss_pred EEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence 4455555 4899999998864222233578898874 67999999999999764
No 188
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.06 E-value=1.9e-05 Score=58.25 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=49.3
Q ss_pred cEEEecCCeEEEEEEEeccCC-CeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 435 DIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
...+.+|+.+.|.|.+.+.|. ..+.|++++..+.. ....|.|.++ .++.|.|+|.|.|.
T Consensus 9 ~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 9 WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 467889999999999998876 46999999987621 2347889999 99999999999886
No 189
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.06 E-value=1.5e-05 Score=61.01 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=43.2
Q ss_pred eEEEEeCCeEeeecccc--eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTIDNVD--YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~--~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|+|++.++...... ....|.|.++..+|+|.|+|.|.|..|......+.++
T Consensus 31 ~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 31 PVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred cEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 78999999988654211 3478999999999999999999999998866555443
No 190
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.06 E-value=0.0066 Score=56.76 Aligned_cols=227 Identities=15% Similarity=0.228 Sum_probs=120.4
Q ss_pred EEEecCCccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEEEEec---CCCCCCC----CeEEeEEeCC--eEEEEEEC
Q psy7040 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLD---KPSPPGG----PLKVSNVHAE--GVTLDWKV 246 (716)
Q Consensus 177 ~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~~v~~---~p~~p~~----~~~~~~~~~~--~~~l~W~~ 246 (716)
.+.-.+....++|.+|+++..|.|.+++.|.... .+.-....+.. ....|.. .+......+. .-.++...
T Consensus 7 ~~vCvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~v 86 (300)
T PF10179_consen 7 QIVCVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKV 86 (300)
T ss_pred EEEEcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcC
Confidence 3445677889999999999999999999998555 33322222222 1212211 1222222222 13344554
Q ss_pred CCCCCCCccceEEEEEEeCC-------CCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccc-eEEe
Q psy7040 247 PDDDGGQPIEKYVVDKMDEA-------TGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA-SIEA 318 (716)
Q Consensus 247 p~~~~~~~~~~y~v~~~~~~-------~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~-~~~~ 318 (716)
|.......-..+.+.-+... .+.-.........-..+.+.++.|+..|.+++.+.+..... ...... ..+.
T Consensus 87 P~~~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~-~~~kV~aast~ 165 (300)
T PF10179_consen 87 PKRSSTHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGP-STFKVQAASTN 165 (300)
T ss_pred CcCCCCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCc-eEEEEEEecCC
Confidence 42111111222223222111 11001111112345789999999999999999876643321 111111 1122
Q ss_pred cCCCCCCCCCCCcEEEeee----CCeEEEEecCCCCCCCccceEEEEEEeecCCC----------------------ceE
Q psy7040 319 KNPFNQPGKPGTPEIKDFD----TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP----------------------IWE 372 (716)
Q Consensus 319 ~~~~~~p~~p~~~~~~~~~----~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~----------------------~~~ 372 (716)
......|.-|.+..+.... -++++|.|.+..+. . ..|=|+.+..... ++.
T Consensus 166 ~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~---~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v 241 (300)
T PF10179_consen 166 PSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR---S-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKV 241 (300)
T ss_pred cccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC---C-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEE
Confidence 2233567788888886544 38899999983322 1 3466655433211 112
Q ss_pred EEeeec---------CCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040 373 KCAQTE---------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 408 (716)
Q Consensus 373 ~~~~~~---------~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~ 408 (716)
.+.... ..-...+|.+|+||+.|.|.|.+.-..|.+
T Consensus 242 ~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~s 286 (300)
T PF10179_consen 242 LCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQS 286 (300)
T ss_pred EEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCce
Confidence 221111 111345799999999999999998766654
No 191
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.04 E-value=3.3e-05 Score=58.22 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=43.5
Q ss_pred eccCcee----eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcCCC--CceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNSQG--KDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G--~~~~s~~l~v~ 699 (716)
|.|.+.| .+.|.+.++..... .......|.|.++..+|+|.|+|.|.|..+ ....+..|+|.
T Consensus 6 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 6 VNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 5555554 78998866422111 122246899999999999999999999877 55666666664
No 192
>KOG4802|consensus
Probab=98.03 E-value=0.00023 Score=66.90 Aligned_cols=176 Identities=23% Similarity=0.330 Sum_probs=103.1
Q ss_pred CCCCCceE-EEEeCCeEEEEecCCCCCCCCccceEEEEE------------EcCCCCcEEEecccCC-CeEEecCCCCCc
Q psy7040 56 DPEGPLEV-SNIHKDGCTLKWNKPKDDGGEPLEGYLVEK------------YDPETGVWIPVGKTRE-PEMDVTGLTPGH 121 (716)
Q Consensus 56 ~p~~~l~~-~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~------------~~~~~~~~~~~~~~~~-~~~~i~~L~~~~ 121 (716)
.||.+..+ ......++.+.|.--. .+.-|.+.+ +..+...|+.+..... ..+...++.||.
T Consensus 146 l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgR 220 (516)
T KOG4802|consen 146 LPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGR 220 (516)
T ss_pred CCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcce
Confidence 34444333 3566678999998532 122233322 1233446777665544 489999999999
Q ss_pred EEEEEEEEEecCccCCCccccceEEe-cCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEE
Q psy7040 122 EYKFRVKALNKEGESEPLETFSSIIA-RDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY 200 (716)
Q Consensus 122 ~y~~~v~a~~~~g~~~~s~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y 200 (716)
-|+|||.|+|.+|.-..+........ ++|
T Consensus 221 wyefrvaavn~~G~rGFs~PSkpf~ssk~p-------------------------------------------------- 250 (516)
T KOG4802|consen 221 WYEFRVAAVNAYGFRGFSEPSKPFPSSKNP-------------------------------------------------- 250 (516)
T ss_pred eEEEEEeeeecccccccCCCCCCCCCCCCC--------------------------------------------------
Confidence 99999999999985544433322111 100
Q ss_pred EEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeC---CeEEEEEECCCCCCCCccceEEEEEEeCCCC---CeEEcc
Q psy7040 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA---EGVTLDWKVPDDDGGQPIEKYVVDKMDEATG---RWTPAG 274 (716)
Q Consensus 201 ~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~---~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~---~~~~~~ 274 (716)
.+|.+|.+ +.+..+.. -...|.|.++.. .-|+..|.|.|...-.. ......
T Consensus 251 --------------------kaPp~P~d-l~l~~v~~dG~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~s~k~~m~tks 307 (516)
T KOG4802|consen 251 --------------------KAPPSPND-LKLIGVQFDGRYMLKVVWCPSKS--DLPVEKYKITWSLYVNSAKASMITKS 307 (516)
T ss_pred --------------------CCCcCccc-ceeeeeeecceEEEEEEeCCCCC--CCcceeeEEEeehhhhhhhhhccccc
Confidence 13444444 55543322 225677776543 34799999988543211 000000
Q ss_pred ccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy7040 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309 (716)
Q Consensus 275 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~ 309 (716)
........+.|++|.|+..|.+.|.|....|....
T Consensus 308 ~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 308 SYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL 342 (516)
T ss_pred ceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence 00112234559999999999999999998886643
No 193
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.01 E-value=1.4e-05 Score=62.27 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=43.9
Q ss_pred eccCcee----eEEEEeCCeEeeeccc-----ceeeEEEEccC-----CCCCcEEEEEEEEcC-CCCc-eeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNV-----DYFTKITIRPL-----QRSDTAQYTVTATNS-QGKD-QVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~-----~~~~~~~i~~l-----~~~~~y~y~~~a~n~-~G~~-~~s~~l~v 698 (716)
|.|.+.| .+.|+|+|..+..... .....+.|.++ .+.|.|.|+|.|.|. .|.. +..+.|.|
T Consensus 19 l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 19 LNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 6666666 8999999998864411 11234667666 589999999999999 9987 44555543
No 194
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.00 E-value=0.0002 Score=54.56 Aligned_cols=82 Identities=27% Similarity=0.479 Sum_probs=66.9
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...+.|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678899999999999888889999998 77766556666666655679999999999999999999988887666555
Q ss_pred EEE
Q psy7040 514 VTV 516 (716)
Q Consensus 514 ~~v 516 (716)
+.+
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 195
>smart00409 IG Immunoglobulin.
Probab=98.00 E-value=0.0002 Score=54.56 Aligned_cols=82 Identities=27% Similarity=0.479 Sum_probs=66.9
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeC-CeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEE
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~ 513 (716)
.+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...+.|.|.|.+.+..+.......
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678899999999999888889999998 77766556666666655679999999999999999999988887666555
Q ss_pred EEE
Q psy7040 514 VTV 516 (716)
Q Consensus 514 ~~v 516 (716)
+.+
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 543
No 196
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.99 E-value=2e-05 Score=60.18 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=43.2
Q ss_pred eEEEEeCCeEeeec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|++++..+... .......|.|.++..+|.|.|.|.|.|..|....+..|.|
T Consensus 25 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 25 TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 78999998876533 1122257899999999999999999999999888877764
No 197
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.99 E-value=2.5e-05 Score=61.87 Aligned_cols=61 Identities=21% Similarity=0.151 Sum_probs=42.4
Q ss_pred eccCcee----eEEEEeCCeEeeec-----------ccceeeEEEE--ccCCCCCcEEEEEEEEcCCCC-ceeeEEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID-----------NVDYFTKITI--RPLQRSDTAQYTVTATNSQGK-DQVFIEVVV 698 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~-----------~~~~~~~~~i--~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v 698 (716)
|.|.+.| .+.|+++|..+... ..+....+.+ ..+...|+|.|+|.|.|..|. .+..+.|.|
T Consensus 21 l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 21 LNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 6677776 89999999987652 0111112222 234689999999999999999 466666665
No 198
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.98 E-value=0.0001 Score=57.44 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=58.0
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
.++.+..|+.+.|.|.+.+.+.+.+.|++.+... ....++.+.. ......|.|.++...|.|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 4578999999999999988888899998533211 1234454432 234568999999999999999999976
Q ss_pred CCceeeEEEEE
Q psy7040 505 WGTDKGTAKVT 515 (716)
Q Consensus 505 ~g~~~~s~~~~ 515 (716)
.. ...+..++
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 53 34444443
No 199
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.95 E-value=3.1e-05 Score=58.84 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=60.3
Q ss_pred CcccccccccEEEecCCeEEEEEE-EeccCCCeEEEEeCCeEec-cCCcEEEEeCCCeEEEEECCCCCCCce-eEEEEEE
Q psy7040 426 PYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVK 502 (716)
Q Consensus 426 P~~~~~~~~~~~~~~g~~~~~~~~-v~~~p~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~~~a~ 502 (716)
|.+.......+.+.+|..+.|.|. -.+.|.+.+.|.+++.... .+.++.+.. ...|.|.++.+.|.| .|.|.|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEE
Confidence 444445567789999999999997 5999999999998765432 333333322 258999999999999 7999999
Q ss_pred cCCCc
Q psy7040 503 NSWGT 507 (716)
Q Consensus 503 n~~g~ 507 (716)
|....
T Consensus 80 ~~~~~ 84 (95)
T cd05845 80 FPGLR 84 (95)
T ss_pred ccccc
Confidence 87643
No 200
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.95 E-value=8.6e-05 Score=55.97 Aligned_cols=74 Identities=38% Similarity=0.674 Sum_probs=52.2
Q ss_pred CCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC---cEEEecccC-CCeEEecCCCCCcEEEEEEEEEecC
Q psy7040 58 EGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGKTR-EPEMDVTGLTPGHEYKFRVKALNKE 133 (716)
Q Consensus 58 ~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~-~~~~~i~~L~~~~~y~~~v~a~~~~ 133 (716)
+..+.+.....+++.|+|++|...++ .+|.+.+...... .|....... ...+.|.+|.+++.|.|+|+|.+..
T Consensus 4 p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~ 80 (83)
T smart00060 4 PSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGA 80 (83)
T ss_pred CCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEccc
Confidence 33467777778899999997753321 6677776643322 344443333 4789999999999999999999875
Q ss_pred c
Q psy7040 134 G 134 (716)
Q Consensus 134 g 134 (716)
|
T Consensus 81 g 81 (83)
T smart00060 81 G 81 (83)
T ss_pred C
Confidence 5
No 201
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.95 E-value=0.11 Score=63.05 Aligned_cols=217 Identities=12% Similarity=0.023 Sum_probs=113.9
Q ss_pred CeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCc
Q psy7040 393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472 (716)
Q Consensus 393 ~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~ 472 (716)
..|.+.|.|.|..+.........+ .... .--.|.. .-...+..|....|.+.+.-.....+.|+.....+.....
T Consensus 1925 G~Y~VtV~A~N~Vs~~~a~~~V~V--le~V-~gL~I~~--~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~ 1999 (2740)
T TIGR00864 1925 DDHMVNLRAKNEVSCAQANLHIEV--LEAV-RGLQIPD--CCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL 1999 (2740)
T ss_pred CcEEEEEEEEeccceeeeeEEEEE--EEec-cceEecC--CcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc
Confidence 469999999999887544332211 1111 0000100 0011257788889999886655667899866443333332
Q ss_pred EEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE---EEEEEEeCCCCCCCCceeeEEEEEEecCCCce
Q psy7040 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549 (716)
Q Consensus 473 ~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~---~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~ 549 (716)
+...+....+... ..-.|.+++.|.|..|.......+.+. ....-|..|...--.....|.+.....+. ..
T Consensus 2000 --~~~~G~~vty~~~---~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~-~v 2073 (2740)
T TIGR00864 2000 --VIHMGKDVSYTAE---AAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPN-FM 2073 (2740)
T ss_pred --eeecCCceEEccC---CCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCC-cE
Confidence 2222333344333 345688889999999988777666666 12233322321111113445554433221 23
Q ss_pred eeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCC-CCCccceeeccceeEEE
Q psy7040 550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP-SAPEGPIQWLLTLTDVT 625 (716)
Q Consensus 550 ~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p-~~~~~~~~~~~~~v~l~ 625 (716)
...|-..+.... .........+.. ..+| .|.++|.|.|..........+.|...+ ..|. +..+....+.+.
T Consensus 2074 ~~~WDFGDGt~~-~~T~~~~~sHtY--~r~G-~Y~V~V~a~N~VS~~~a~~~i~V~vl~C~~P~-V~i~~~~~~~i~ 2145 (2740)
T TIGR00864 2074 ACHWDFGDGSAG-QDTDEPRAEHEY--LHPG-DYRVQVNASNLVSFFSAHAEINVQVLACEEPE-VDVVLALQLAIR 2145 (2740)
T ss_pred EEEEEecCCCCc-cccCCceeEEEe--cCCc-cEEEEEEEEcceeeeeeEEEEEEEEecCCCCC-cEeccCceeEEE
Confidence 356654432221 111111123332 3444 699999999998877777777754333 3344 666655555443
No 202
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.94 E-value=4.1e-05 Score=54.23 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=50.2
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040 440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g 506 (716)
.|..+.|.|.+.+.+.+.+.|++++..+. .... .......|.|.++...+.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP--ESNR--LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC--CCCE--EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 36778999999889999999999988775 1111 223355899999999999999999998765
No 203
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.94 E-value=2.5e-05 Score=57.63 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=31.7
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~ 686 (716)
.+.|+++|..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 32 ~~~W~kng~~l~~----~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 32 STQWYHNGKLLET----TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred cEEEEECCEEeec----cCCeEEEeec-ccCCEEeEEECCCC
Confidence 6899999998733 2368999999 99999999999985
No 204
>KOG3515|consensus
Probab=97.92 E-value=0.00062 Score=71.33 Aligned_cols=446 Identities=15% Similarity=0.075 Sum_probs=203.1
Q ss_pred eEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCC
Q psy7040 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309 (716)
Q Consensus 230 ~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~ 309 (716)
+......++.+.|.|..- ++.|+..|.+........ ..........+...+.....-..|.|+|.|..|. +
T Consensus 15 l~~~~~~g~~v~l~C~v~---~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~ 85 (741)
T KOG3515|consen 15 LTVGLRLGEDVPLPCRVN---SNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--P 85 (741)
T ss_pred CChhhccCCcceeeeecC---CCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccC--c
Confidence 334455788999999963 333677777665443322 2222234567888888888888999999997332 2
Q ss_pred CcccceEEecCCCCCCC-CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEe---ecCCC------ceEEEeeecC
Q psy7040 310 LTTTASIEAKNPFNQPG-KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK---EKYSP------IWEKCAQTEG 379 (716)
Q Consensus 310 ~~~~~~~~~~~~~~~p~-~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~---~~~~~------~~~~~~~~~~ 379 (716)
+... .... ....|. .+............+.+.|..-. .+.+...|+.... ..... .+........
T Consensus 86 ~~~~--~~l~-v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~--~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t 160 (741)
T KOG3515|consen 86 SRCP--MILD-VDYPPACLPELGEIFQVDKGVVQIICSAKV--AGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYT 160 (741)
T ss_pred eecc--eeec-cccCccccccccchhhhcCCeEEEEEeecC--CCCCCcceeeeeccEEeecccCCcccccccccCceec
Confidence 2211 1111 112222 23334455566778999995411 1112222322221 11000 0000000001
Q ss_pred CCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEE-eccCCCeE
Q psy7040 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK 458 (716)
Q Consensus 380 ~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v-~~~p~~~~ 458 (716)
....+.+..........++|.|.+..-.....................+. .......+.+|..+.+.|.+ .+.|.+.+
T Consensus 161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~-~~~~~qsF~~g~~inlvc~~~gg~P~~~~ 239 (741)
T KOG3515|consen 161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGIT-GAQEQQSFTEGQTINLVCNAQGGNPSQQQ 239 (741)
T ss_pred cccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceec-chhhcCcccccceEEEEehhhcCCcchhh
Confidence 12233344444556677888888753332222222222222221111111 11122567789999999976 57788899
Q ss_pred EEEeCCeEeccCCcEEEEeCC-CeEEEEECCCCCCC-ceeEEEEEEcCCCceeeEEEEEEE--EEEEEEeC--CCCCCCC
Q psy7040 459 EWLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVL--GCSLKWNP--PEDDGGA 532 (716)
Q Consensus 459 ~W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~-~~~y~~~a~n~~g~~~~s~~~~v~--~v~l~W~~--p~~~~~~ 532 (716)
.|+++...............+ ...........+.+ .-...|.|.| .+....-..+... .+.+.=.. -......
T Consensus 240 ~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~ 318 (741)
T KOG3515|consen 240 TWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGRSA 318 (741)
T ss_pred hhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccccc
Confidence 999987665432111111111 01111111122211 2234488887 2111111111111 00000000 0000001
Q ss_pred ceeeEEEEEEecCCCceeeeEEEccceeeeecc------c---cceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee
Q psy7040 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDN------V---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603 (716)
Q Consensus 533 ~i~~y~v~~~~~~~~~~~~~w~~~~~~~~~~~~------~---~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 603 (716)
.+..+.+.-. +.....|.+.......... . .....+.+..+...+...|.|.|.+..+....+....
T Consensus 319 r~~c~~sss~----p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~ 394 (741)
T KOG3515|consen 319 RSSCVSSSSK----PPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFL 394 (741)
T ss_pred ccceeccCCC----CccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEcccccccccccccccee
Confidence 1222222111 1222555543221110000 0 0124455566667788999999999775444333333
Q ss_pred c--cCCCCCCcc-ceeeccceeEEEEEEeeEEEEeeeeccCcee--eEEEEeCCeEeeecccc------eeeEEEEccCC
Q psy7040 604 V--TDKPSAPEG-PIQWLLTLTDVTWEISNYLQELHSSLMPISL--ESQYLMNDKRVTIDNVD------YFTKITIRPLQ 672 (716)
Q Consensus 604 v--~~~p~~~~~-~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~--~~~W~~~~~~~~~~~~~------~~~~~~i~~l~ 672 (716)
+ ..+|..+.. +..+...... +..+.+ ..|.... .+.|.+.+-++...... .....-+.++.
T Consensus 395 l~~l~~p~~L~~~~~~v~~~e~d----~~~~~~----~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~ 466 (741)
T KOG3515|consen 395 LPVLPSPAFLVRHKTAVVAMEQD----HQAAPL----PVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVS 466 (741)
T ss_pred ccccCCchhhhhcccceeeccCc----cccccC----cccCCCcccchhheecceecccccCceEEeeccccccccceee
Confidence 3 333332210 1111100000 111111 1111111 78888877666554111 11223344577
Q ss_pred CCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040 673 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703 (716)
Q Consensus 673 ~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~ 703 (716)
..|.|.|.|.|.|+.|.......+.+.+.|.
T Consensus 467 ~~d~g~y~~tatns~gg~~~~~~~~~~~sp~ 497 (741)
T KOG3515|consen 467 RSDGGSYGLTATNSPGGAQAYLLLGVHTSPH 497 (741)
T ss_pred eccCCcceeeeccCCCceeeEEeeccccCCc
Confidence 8899999999999999888777666665444
No 205
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.92 E-value=3.4e-05 Score=58.74 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=56.2
Q ss_pred ccEEEecCCeEEEEEEE-eccCCCeEEEEeCCeEe--ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 434 SDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITI--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
....+.+|..+.|.|.. .+.|.+.+.|++++... ..+.+..+.. ....|.|.++...|.|.|.|.|.|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 44678899999999976 78899999999998754 2233333322 24489999999999999999999976543
No 206
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.91 E-value=9.8e-05 Score=56.44 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=54.2
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEecc--------------CCcEEEEe---CCCeEEEEECCCCCCCceeEE
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--------------KDRFKIVN---DDKSTKLKVFDSKRGDSGIYT 498 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~l~~~~~~~y~ 498 (716)
+.+..|+.+.|.|...+.+.+.+.|++++..... ..++.... ......|+|.+++..|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 4578899999999999999999999976633211 11222222 334568999999999999999
Q ss_pred EEEEcCCCc
Q psy7040 499 LAVKNSWGT 507 (716)
Q Consensus 499 ~~a~n~~g~ 507 (716)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999998764
No 207
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.89 E-value=9e-05 Score=55.66 Aligned_cols=70 Identities=29% Similarity=0.405 Sum_probs=54.0
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCC-ceeeEEEE
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKV 514 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g-~~~~s~~~ 514 (716)
..+..|+.+.|.|.+.+.|...+.|++++..+..... .+.+..+..++.|.|+|.|.+..+ ..+.++.+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 5588999999999999998999999998877642211 166788899999999999999665 33344444
Q ss_pred E
Q psy7040 515 T 515 (716)
Q Consensus 515 ~ 515 (716)
.
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 3
No 208
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.88 E-value=0.00019 Score=54.04 Aligned_cols=77 Identities=32% Similarity=0.629 Sum_probs=53.1
Q ss_pred CCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCC---ceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEe
Q psy7040 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 403 (716)
Q Consensus 327 ~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n 403 (716)
+|.++.+......++.|+|.+|....+ .+|.+.+...... .|...... .....+.+.+|.+++.|.|+|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEc
Confidence 345577777777799999997644321 5677776644322 24433322 2257899999999999999999998
Q ss_pred CCCC
Q psy7040 404 KGGP 407 (716)
Q Consensus 404 ~~g~ 407 (716)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 7553
No 209
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.85 E-value=3.8e-05 Score=59.18 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=40.7
Q ss_pred eccCcee----eEEEEeCCeEeeec----ccceeeEEEEccCC-CCCcEEEEEEEEcCCCCce
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQ 691 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~-~~~~y~y~~~a~n~~G~~~ 691 (716)
|.|.+.| .+.|++++..+... .......|.|.++. ..|.|.|+|.|.|..|...
T Consensus 24 l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 24 LNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred EEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 5666665 89999999988432 11122578898887 5899999999999999754
No 210
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.82 E-value=6.6e-05 Score=56.84 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=42.9
Q ss_pred eEEEEeCCeEeeec------------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 645 ESQYLMNDKRVTID------------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 645 ~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
.+.|...++.+... .......|.|.++...|+|.|+|.|.|..|....+..|.|.+
T Consensus 19 ~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~~ 86 (86)
T cd05862 19 DFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVHE 86 (86)
T ss_pred EEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEeC
Confidence 66898766533111 012346899999999999999999999999888888888864
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.81 E-value=0.00028 Score=53.99 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=54.0
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeCCe--E----eccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE-cCCCc
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T----IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK-NSWGT 507 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~--~----~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~-n~~g~ 507 (716)
.+...+|..+.|.|.. ..|.+.+.|++... . +....++... ...|.|.++.+.|+|.|.|.|. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3567789999999996 47888999998432 1 1112333322 2369999999999999999998 56665
Q ss_pred eeeEEEEEE
Q psy7040 508 DKGTAKVTV 516 (716)
Q Consensus 508 ~~~s~~~~v 516 (716)
......+.|
T Consensus 80 ~~~~~~l~v 88 (91)
T cd05871 80 TLAKYTLHV 88 (91)
T ss_pred EEEEEEEEE
Confidence 555555544
No 212
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.80 E-value=9.7e-05 Score=55.45 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=52.3
Q ss_pred EEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 436 IKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
..+.+|+.+.|.|... +.+...+.|++++..+.. ......|.|.++.+.|+|.|+|.|.+..|..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 3588999999999984 456678999999876531 1234589999999999999999999998854
No 213
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.77 E-value=0.00014 Score=51.60 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=46.6
Q ss_pred CCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCCeE--EEEECCCCCCCceeEEEEE
Q psy7040 441 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAV 501 (716)
Q Consensus 441 g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~l~~~~~~~y~~~a 501 (716)
|+.+.|.|.+ ...+...+.|.+++.................. .|.|.++.++|.|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6778999999 88888899999998776544443333332221 3999999999999999986
No 214
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.76 E-value=0.00018 Score=54.48 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeccCC--CeEEEEeCCeEecc---CCc--EE-EEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 441 GSNFEFDINVIGEPI--PTKEWLCNDITIIS---KDR--FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 441 g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~---~~~--~~-~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
|+.+.+.|.+.+.+. ..+.|..++..... ... .. .........|.|.++...|.|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 567899999987654 47799887754311 111 00 01122356899999999999999999999999888777
Q ss_pred EEEE
Q psy7040 513 KVTV 516 (716)
Q Consensus 513 ~~~v 516 (716)
.+.|
T Consensus 81 ~~~V 84 (86)
T cd05862 81 IVIV 84 (86)
T ss_pred EEEE
Confidence 7765
No 215
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.75 E-value=0.013 Score=54.50 Aligned_cols=246 Identities=14% Similarity=0.079 Sum_probs=130.8
Q ss_pred CCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEcccc-CcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccce
Q psy7040 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315 (716)
Q Consensus 237 ~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~ 315 (716)
...+.+-|++-.+ .++..|.|+....+.. +.+.... ++-.-.+.-.+|..+..|.+.+.+.+..+.-..+ + .
T Consensus 83 ~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs--f-~ 155 (343)
T COG3401 83 PKSVKVFWSPHPD---VSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS--F-T 155 (343)
T ss_pred cceeeecccccCC---CCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee--e-e
Confidence 4458999995222 2578999998766544 4333322 1122345556899999999999998865533222 1 1
Q ss_pred EEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeE
Q psy7040 316 IEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395 (716)
Q Consensus 316 ~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y 395 (716)
.....+...|..-.++++.....+.+.|+|..+... ..|+|+....+......... ...+.+.......|..|
T Consensus 156 gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~g~e~~~~ia~--t~~n~y~d~~eglga~~ 228 (343)
T COG3401 156 GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDSGNEEYGFIAQ--TTENSYYDVKEGLGAVE 228 (343)
T ss_pred eeecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCCccccccceee--ccccchhhhhhccCcee
Confidence 222233345555556666667788899999985543 27888877665433332222 23344443334448889
Q ss_pred EEEEEEEeCCC-CCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEE---EEEEeccCCCeE-EEEeCCeEeccC
Q psy7040 396 EFRVLAVNKGG-PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEF---DINVIGEPIPTK-EWLCNDITIISK 470 (716)
Q Consensus 396 ~~~v~a~n~~g-~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~---~~~v~~~p~~~~-~W~~~~~~~~~~ 470 (716)
.|.|.++...| .+..+.....-........|.+. +..... .+.+.+.+.... .+.-........
T Consensus 229 ~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~-----------g~t~~~s~i~V~~E~~~~~~av~ytvyr~~~g~~ 297 (343)
T COG3401 229 YYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIP-----------GETTEASFIGVAAEQNQLRQAVTYTVYRVEDGTP 297 (343)
T ss_pred EEEEEEEcCCcceeccCCccccccccCCcccccCC-----------CceeeeeeeeEEecccccceeeEEeeeeccCCCc
Confidence 99999998554 34333322222222222233322 111111 133333332321 111111000000
Q ss_pred CcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 471 DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 471 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
.++. .-.........+.....+.|.+.+.+..|..+.
T Consensus 298 ~~~f---~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~~ 334 (343)
T COG3401 298 TKFF---TITETDGQDNDMLTGVEYRYEVVAVDKAGLSSH 334 (343)
T ss_pred ceee---eeeeccccchhhccccceeEEEEEecccccccC
Confidence 0111 011234556677788889999999988876543
No 216
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.74 E-value=0.0008 Score=51.44 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=56.6
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------ccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
.++.+.+|+.+.|.|.+.......+.|++.+..+ ..++++.... .+...+|.|.+++..|.|.|.|++...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678999999999999988776677887665332 2456666655 456778999999999999999999764
Q ss_pred C
Q psy7040 505 W 505 (716)
Q Consensus 505 ~ 505 (716)
.
T Consensus 85 p 85 (95)
T cd05881 85 P 85 (95)
T ss_pred c
Confidence 3
No 217
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.72 E-value=0.0001 Score=56.67 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=44.2
Q ss_pred eccCcee-----eEEEEeCCeEeeec------------ccceeeEEEEccCCCCC-cEEEEEEEEcCCCCceeeEEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTID------------NVDYFTKITIRPLQRSD-TAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~------------~~~~~~~~~i~~l~~~~-~y~y~~~a~n~~G~~~~s~~l 696 (716)
|.|.+.+ .+.|...+..+... ..+....|.|.++...| .|.|.|.|.|..|.+.....|
T Consensus 21 L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 21 VKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 5566544 67888776655432 12345789999998766 899999999999999887766
No 218
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.70 E-value=8e-05 Score=57.13 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=43.8
Q ss_pred eccCcee---eEEEEeCCeEeeecc------cceeeEEEEccCCCCCcEEEEEEEEcCCC-CceeeEEEEEec
Q psy7040 638 SLMPISL---ESQYLMNDKRVTIDN------VDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVTD 700 (716)
Q Consensus 638 ~~~~~~~---~~~W~~~~~~~~~~~------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G-~~~~s~~l~v~~ 700 (716)
|.|.+.+ .+.|++++..+.... ......|.|.++.++|+|.|+|.|.|..+ ....+..|.|.+
T Consensus 16 L~C~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 16 LECSPKSNLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred EEEeCCCCCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 4444444 899999987654431 11124699999999999999999998654 335667777654
No 219
>KOG4367|consensus
Probab=97.70 E-value=5.6e-05 Score=71.06 Aligned_cols=92 Identities=32% Similarity=0.452 Sum_probs=76.8
Q ss_pred CCCCCC-ceEE--EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040 55 LDPEGP-LEVS--NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131 (716)
Q Consensus 55 ~~p~~~-l~~~--~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~ 131 (716)
..|..| +++. ....++++|.|+.|. ..+.++++|.++..+.+++.+.++..+.++.+++.||--++.|.-||.|.|
T Consensus 436 ~vpatpilq~~ec~t~nns~t~~wkqp~-~~~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n 514 (699)
T KOG4367|consen 436 PVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFN 514 (699)
T ss_pred CCCCCceeehhhhhccCCceEEEeecCC-CCCCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhh
Confidence 345555 3333 446679999999665 466789999999999999999999999999999999999999999999999
Q ss_pred cCccCCCccccceEEe
Q psy7040 132 KEGESEPLETFSSIIA 147 (716)
Q Consensus 132 ~~g~~~~s~~~~~~~~ 147 (716)
..|.++.|......+.
T Consensus 515 ~tg~s~ys~tl~lqts 530 (699)
T KOG4367|consen 515 KTGVSPYSKTLVLQTS 530 (699)
T ss_pred ccCCCcccceeEeeec
Confidence 9999998877655543
No 220
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.69 E-value=0.00013 Score=53.31 Aligned_cols=53 Identities=9% Similarity=-0.050 Sum_probs=42.7
Q ss_pred eccCcee-----eEEEEeCCeEeeecc----c----ceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN----V----DYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~----~----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
|.|...+ +++|+++++++.... . .....|.+.-...+|.+.|+|.|.|.++..
T Consensus 4 L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 4 LTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6777776 999999999986541 1 222579999999999999999999998875
No 221
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.69 E-value=7.8e-05 Score=55.97 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=37.0
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
.+.|+++|..+... .....|.|..+...|+|.|+|.|.|..|+.
T Consensus 31 ~~~w~k~g~~~~~~--~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 31 KVTYYRDGKAKKYS--HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred EEEEEECCeEcccc--CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 78999999876432 234689999999999999999999999865
No 222
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=97.64 E-value=0.057 Score=50.67 Aligned_cols=223 Identities=14% Similarity=0.129 Sum_probs=118.5
Q ss_pred eCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEE--EE------------EEEEEEeCCCCCCCCceeeEEEE-E
Q psy7040 477 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT--VL------------GCSLKWNPPEDDGGAPIEYYMVE-K 541 (716)
Q Consensus 477 ~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~--v~------------~v~l~W~~p~~~~~~~i~~y~v~-~ 541 (716)
-.+....++|.+|.|++.|.+.|.|.|.....+...... .+ .-.+.|-.-...+|..+..|.+- .
T Consensus 10 Cvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~ 89 (300)
T PF10179_consen 10 CVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKR 89 (300)
T ss_pred EcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcC
Confidence 344566889999999999999999999754333221111 11 11112211111111111111111 0
Q ss_pred EecCC----------CceeeeEEEccceeeeeccccceeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeee--------
Q psy7040 542 METDT----------GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV-------- 603 (716)
Q Consensus 542 ~~~~~----------~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~-------- 603 (716)
..... +...+.-+..+...........-..+.+.++.+|..|.+++.+.|... +.....+.
T Consensus 90 ~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~ 168 (300)
T PF10179_consen 90 SSTHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSK 168 (300)
T ss_pred CCCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCccc
Confidence 00000 112233334444444333445568899999999999999998876433 22222221
Q ss_pred --ccCCCCCCccceeec--c--ceeEEEEE----Ee-eEEEEeeeeccC------------cee-----eEEEE----eC
Q psy7040 604 --VTDKPSAPEGPIQWL--L--TLTDVTWE----IS-NYLQELHSSLMP------------ISL-----ESQYL----MN 651 (716)
Q Consensus 604 --v~~~p~~~~~~~~~~--~--~~v~l~w~----i~-~y~v~~~~~~~~------------~~~-----~~~W~----~~ 651 (716)
+|..|..+. +...+ . ++++|.|. -. .|=|..+.+.-. |.| ...|. +.
T Consensus 169 ~~~P~LP~d~~-Ik~f~~lrtC~SvTIAW~~s~d~~~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~ 247 (300)
T PF10179_consen 169 QPYPQLPDDTS-IKEFNKLRTCNSVTIAWLGSPDRSIKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFH 247 (300)
T ss_pred CCCCCCCCCCc-eeEEcCCcccceEEEEEecCCCCCceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEc
Confidence 366666666 65554 3 69999999 11 455544432211 111 11111 00
Q ss_pred CeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy7040 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701 (716)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~ 701 (716)
...-..........-+|.+|.|+..|-+-+.|.-..|..-.-..+.|.+.
T Consensus 248 ~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 248 SPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred CCccccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence 00000001111245689999999999999999887887766666777654
No 223
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.64 E-value=0.00018 Score=54.95 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred eEEEEeCCeEeeeccc-----ceeeEEEEccCCCCCcEEEEEEEEcCCCCce
Q psy7040 645 ESQYLMNDKRVTIDNV-----DYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~-----~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~ 691 (716)
.+.|+|+++++..... .....|.|.++.++|+|.|+|.|.|..|...
T Consensus 31 ~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 31 ELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred cEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 7999999998764311 1235799999999999999999999987764
No 224
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.60 E-value=0.00038 Score=53.15 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=51.6
Q ss_pred EEecCCeEEEEEEE-e----ccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040 437 KVRAGSNFEFDINV-I----GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509 (716)
Q Consensus 437 ~~~~g~~~~~~~~v-~----~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~ 509 (716)
.+..+....+.|.- . ..+.+.+.|+|++..+........... +...|.|.++.++|.|.|+|.|.+..|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 45567777888852 2 235668999999998764443222212 244799999999999999999999876553
No 225
>KOG3632|consensus
Probab=97.59 E-value=0.00046 Score=72.36 Aligned_cols=262 Identities=16% Similarity=0.161 Sum_probs=152.1
Q ss_pred ceEEEEeCCeEEEEecCCCCCCC-CccceEEEEEEcCCCCcEEEecccCCCeEEecCCC-CCcEEEEEEEEEecCccCCC
Q psy7040 61 LEVSNIHKDGCTLKWNKPKDDGG-EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLT-PGHEYKFRVKALNKEGESEP 138 (716)
Q Consensus 61 l~~~~~~~~s~~l~W~~p~~~~~-~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~y~~~v~a~~~~g~~~~ 138 (716)
+.+......++.|-|++|....+ .++..|.+.... +.......+..+...+..|. .+..|.+.|.+....|.+..
T Consensus 584 ~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~---elrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~ 660 (1335)
T KOG3632|consen 584 GAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM---ELRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQ 660 (1335)
T ss_pred hhhhhhhccceeeeccCCCCCCccccceeeeeecch---hhhhhcccccchHHHHhhccccCCceeeehhhhhccCCCCc
Confidence 44456678899999999765433 456666553321 11111222222333444443 34567777777777775544
Q ss_pred ccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEE
Q psy7040 139 LETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVI 218 (716)
Q Consensus 139 s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~ 218 (716)
......+-
T Consensus 661 lrc~Llvg------------------------------------------------------------------------ 668 (1335)
T KOG3632|consen 661 LRCILLVG------------------------------------------------------------------------ 668 (1335)
T ss_pred ceeeEecc------------------------------------------------------------------------
Confidence 33222111
Q ss_pred EecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEE
Q psy7040 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRV 298 (716)
Q Consensus 219 v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v 298 (716)
...+..|.+ +++..+...+..++|-+ .+.+. -.+.+..... +.........+++.+|.|++.|..+|
T Consensus 669 -g~a~vvpsq-lrv~n~tqtSa~itwvp-~nsn~-----~Hviyln~eE-----~~ps~a~~y~ytf~~lrpgt~y~a~v 735 (1335)
T KOG3632|consen 669 -GAAPVVPSQ-LRVWNATQTSAMITWVP-FNSNF-----LHVIYLNAEE-----PRPSVAEMYNYTFMRLRPGTDYWASV 735 (1335)
T ss_pred -ccccccchh-hhhhhhhchhhheeeee-cCCCc-----ceeeecCCcc-----CCCchhhhhHHHHhccCCCCccceec
Confidence 134567777 88889999999999995 32221 1122222211 11112335678889999999999999
Q ss_pred EEEcC-CC-----CCCCCcccceEEec-CCCCCCCCCCCcEEEe-eeCCeEEEEecCCC-----CCCCccceEEEEEEee
Q psy7040 299 RAVNK-QG-----KSEPLTTTASIEAK-NPFNQPGKPGTPEIKD-FDTDFVELAWTPPE-----QNGGSPIVGYIIEKKE 365 (716)
Q Consensus 299 ~a~n~-~g-----~~~~~~~~~~~~~~-~~~~~p~~p~~~~~~~-~~~~~i~l~W~~p~-----~~~~~~i~~y~v~~~~ 365 (716)
.|.-. .+ ..........+.+. -+..+|.+|.++++.. ..+..+.++|.+|. ..+|..+++|.++...
T Consensus 736 ea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg 815 (1335)
T KOG3632|consen 736 EAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG 815 (1335)
T ss_pred ccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC
Confidence 98764 22 11122222222222 2456778888888864 45678999999974 3466678999998762
Q ss_pred cCCCceEEEeeecCCCCeEEecCCCC-CCeEEEEEEEEeCCCCCCCCCC
Q psy7040 366 KYSPIWEKCAQTEGDTPKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDP 413 (716)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~i~~l~~-~~~Y~~~v~a~n~~g~~~~s~~ 413 (716)
.....+.........+.+..|+. .....+.|+.-...|++.-+.+
T Consensus 816 ---qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesvdsip 861 (1335)
T KOG3632|consen 816 ---QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESVDSIP 861 (1335)
T ss_pred ---ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccccccc
Confidence 22333333344555566666655 3445677777777776654433
No 226
>KOG4152|consensus
Probab=97.58 E-value=0.012 Score=57.53 Aligned_cols=126 Identities=23% Similarity=0.336 Sum_probs=80.9
Q ss_pred eEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEE
Q psy7040 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYII 361 (716)
Q Consensus 282 ~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v 361 (716)
...-..|-+|..|+|+|.|.|..|.+.++......+. ....|.+|..+.+. .+-..+.|.|.+|...+.+.|..|..
T Consensus 648 ~~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc--~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~ 724 (830)
T KOG4152|consen 648 KPVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC--APGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSP 724 (830)
T ss_pred cccccccccccceeeeeeeeeccCCCchhhheeeeec--cCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeeh
Confidence 3444578999999999999999999988877654443 22566777776665 34456999999998887777888876
Q ss_pred EEeecC----CC----ceEEEee-------ecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040 362 EKKEKY----SP----IWEKCAQ-------TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410 (716)
Q Consensus 362 ~~~~~~----~~----~~~~~~~-------~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~ 410 (716)
+..-.. +. ....... .......--+.+...+-...|++.|.|..|.|+.
T Consensus 725 ylAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpa 788 (830)
T KOG4152|consen 725 YLAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPA 788 (830)
T ss_pred hhHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcc
Confidence 652111 00 0111100 0111111223344556678899999999997753
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.58 E-value=0.00081 Score=50.54 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=46.7
Q ss_pred EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEE-eCCC----eEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
++|.|.+.+ .|.+.+.|++++..+......... ..+. ...|.+.....++.+.|+|.|.|.......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence 578999976 688899999999887543221111 1111 236777777777889999999997765543
No 228
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.52 E-value=0.00021 Score=50.43 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=38.9
Q ss_pred eccCcee----eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 638 SLMPISL----ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
|.|.+.+ .+.|++++..+... .......|.|.++...|.|.|+|.|.|..|
T Consensus 7 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 7 LTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 5555443 79999998876622 112336899999999999999999999876
No 229
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.50 E-value=0.00028 Score=52.95 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=38.2
Q ss_pred eccCcee---eEEEEeCCeEeeecc---cceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040 638 SLMPISL---ESQYLMNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNSQ 687 (716)
Q Consensus 638 ~~~~~~~---~~~W~~~~~~~~~~~---~~~~~~~~i~~l~~~~~y~y~~~a~n~~ 687 (716)
|.|.+.+ .+.|+++|..+..+. ......|.|.++...|+|.|+|.|.+..
T Consensus 16 L~C~~~~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 16 LKCSPKSNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 4454443 899999999886541 1122579999999999999999999964
No 230
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.43 E-value=0.00067 Score=49.68 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=47.5
Q ss_pred EEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEe--CCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 444 FEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 444 ~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
+.|+|.. .++|++.++|++++.++.......... ......|.+.-...++.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 4688887 688999999999999986432110000 0023468888889999999999999988764
No 231
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.40 E-value=0.003 Score=53.31 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=47.0
Q ss_pred EEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEEC
Q psy7040 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKV 246 (716)
Q Consensus 186 ~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~ 246 (716)
+|+|.+++..|+|.|.|.+.+..|.....+.|.+..+|.....+-......+..+.|.|.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a 62 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI 62 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEE
Confidence 6899999999999999999999899999999999877754322111122245678899986
No 232
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.40 E-value=0.0014 Score=50.25 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=55.7
Q ss_pred cEEEecCCeEEEEEEEe-----------ccCCCeEEEEeCCeEeccCCc-----EEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040 435 DIKVRAGSNFEFDINVI-----------GEPIPTKEWLCNDITIISKDR-----FKIVNDDKSTKLKVFDSKRGDSGIYT 498 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~-----------~~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~l~~~~~~~y~ 498 (716)
.+.+.+|+++.+.|.+- -.....+.|+|++........ .++... ...|.|..+..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEEE
Confidence 36788999999999861 111237999999744433221 233332 448999999999999999
Q ss_pred EEEEcCCCceeeEEEEE
Q psy7040 499 LAVKNSWGTDKGTAKVT 515 (716)
Q Consensus 499 ~~a~n~~g~~~~s~~~~ 515 (716)
|.+.|.......++.++
T Consensus 87 C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 87 CVLRNSTYCMKVSMSLT 103 (104)
T ss_pred EEECCCCcceEEEEEEE
Confidence 99999887666665544
No 233
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.38 E-value=0.014 Score=54.30 Aligned_cols=247 Identities=15% Similarity=0.208 Sum_probs=135.4
Q ss_pred eCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccC---CCeEEecCCCCCcEEEEEEEEEecCccC-CCcccc
Q psy7040 67 HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR---EPEMDVTGLTPGHEYKFRVKALNKEGES-EPLETF 142 (716)
Q Consensus 67 ~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~---~~~~~i~~L~~~~~y~~~v~a~~~~g~~-~~s~~~ 142 (716)
.+.++.+-|.+..+ -++..|.|+....+.. +...+... .-.+.-.+|..+..|.+.+.|.+..+.- .++...
T Consensus 82 ~~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gV 157 (343)
T COG3401 82 RPKSVKVFWSPHPD---VSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGV 157 (343)
T ss_pred CcceeeecccccCC---CCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeee
Confidence 45569999997542 4588899987755543 44433222 2345566888899999999987765421 111110
Q ss_pred ceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecC
Q psy7040 143 SSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222 (716)
Q Consensus 143 ~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~ 222 (716)
..+. ...
T Consensus 158 E~~~-------------------------------------------------------------------------~~~ 164 (343)
T COG3401 158 EATP-------------------------------------------------------------------------KAE 164 (343)
T ss_pred eccc-------------------------------------------------------------------------ccC
Confidence 0000 011
Q ss_pred CCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEc
Q psy7040 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVN 302 (716)
Q Consensus 223 p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n 302 (716)
|..-.+ +++....++.+.|+|+.+.. ...|.|+..+............ .++.+...-...|..|.|.|.++.
T Consensus 165 P~ei~~-~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~e~~~~ia~t--~~n~y~d~~eglga~~~y~VTtVd 236 (343)
T COG3401 165 PKEITN-VRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGNEEYGFIAQT--TENSYYDVKEGLGAVEYYKVTTVD 236 (343)
T ss_pred Cceeee-eeeecCCCCcceeeccCccc-----cceEEEeccCCccccccceeec--cccchhhhhhccCceeEEEEEEEc
Confidence 111112 44555667889999996543 3378888766655544444432 245555444555899999999998
Q ss_pred CCCCCCC-CcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeecCCC
Q psy7040 303 KQGKSEP-LTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381 (716)
Q Consensus 303 ~~g~~~~-~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~ 381 (716)
..|.... +.....-........|..|.+.. ....+.|.|+.-... ....|.++.-..+.. .. ......
T Consensus 237 ~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~----~~s~i~V~~E~~~~~---~av~ytvyr~~~g~~--~~--~f~it~ 305 (343)
T COG3401 237 NTGFESDLPNEPTVGETGGRYEVPTIPGETT----EASFIGVAAEQNQLR---QAVTYTVYRVEDGTP--TK--FFTITE 305 (343)
T ss_pred CCcceeccCCccccccccCCcccccCCCcee----eeeeeeEEecccccc---eeeEEeeeeccCCCc--ce--eeeeee
Confidence 6664322 22211111111112223333222 223445667652111 234455544333211 11 112344
Q ss_pred CeEEecCCCCCCeEEEEEEEEeCCCCCC
Q psy7040 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGE 409 (716)
Q Consensus 382 ~~~~i~~l~~~~~Y~~~v~a~n~~g~~~ 409 (716)
..+....+..+..|.|.|.+.+..|.+.
T Consensus 306 ~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 306 TDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred ccccchhhccccceeEEEEEeccccccc
Confidence 5566777888999999999999988654
No 234
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=97.38 E-value=0.00065 Score=52.34 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=39.2
Q ss_pred eccCcee----eEEEEeCCeEee--------ec-------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVT--------ID-------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~--------~~-------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
|+|.+.+ .+.|++++..+. .+ .......|.|.++...|+|.|+|.|... -...+.+.|.
T Consensus 17 L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~-~~~~~~~~~~ 94 (95)
T cd05882 17 LKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM-PVRTAKATVT 94 (95)
T ss_pred EEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-ccccEEEEEE
Confidence 5555555 889988765321 01 1112368999999999999999999993 2344455554
No 235
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.34 E-value=0.002 Score=47.95 Aligned_cols=64 Identities=16% Similarity=0.324 Sum_probs=52.9
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~ 502 (716)
..+.+..|+.+.|.|..... .+.+.|++++..+..+.++..... .+.|..+.+.|.|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe
Confidence 45788999999999998775 559999999998876655554444 37899999999999999987
No 236
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.24 E-value=0.0027 Score=50.92 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=55.4
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------------ccCCcEEEEeC--CCeEEEEECCCCCCCceeE
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------------ISKDRFKIVND--DKSTKLKVFDSKRGDSGIY 497 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------------~~~~~~~~~~~--~~~~~l~i~~l~~~~~~~y 497 (716)
..+.+..|..+.|.|.+...+...+.|++....- ....++.+... .....|.|.+++++|.|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 3578999999999999988788899999753210 12344444433 3678999999999999999
Q ss_pred EEEEEcCCC
Q psy7040 498 TLAVKNSWG 506 (716)
Q Consensus 498 ~~~a~n~~g 506 (716)
.|.+.+..+
T Consensus 86 ~C~~~~~~~ 94 (109)
T cd04983 86 FCALSESGG 94 (109)
T ss_pred EEEEecCCC
Confidence 999987543
No 237
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.24 E-value=0.0026 Score=53.64 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=63.0
Q ss_pred EEEEcCCCCCCeEEEEEEEEcCCCCCccceeeeccCCCCCCcc---ceeeccceeEEEEEEeeEEEEeeeeccCceeeEE
Q psy7040 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG---PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQ 647 (716)
Q Consensus 571 ~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v~~~p~~~~~---~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~~~ 647 (716)
++.|.+++..+.+.|.|.+.+..|.......+.|..+|..... +....+..+.|.+.+.|+.- ..-.+.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P--------~~~~i~ 73 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP--------LDVQVE 73 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC--------CCeEEE
Confidence 5789999999999999999998777666666667666643211 11112334444443333210 001689
Q ss_pred EEeCCeEeee------c----------cccee--eEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 648 YLMNDKRVTI------D----------NVDYF--TKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 648 W~~~~~~~~~------~----------~~~~~--~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
|+++|..... . ...++ ..|.+..-..++...|+|.+.+..-
T Consensus 74 W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 74 WTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred EEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 9998753110 0 01111 3455543333445689999887543
No 238
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.18 E-value=0.0011 Score=51.22 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=28.2
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+|.|.++.++|+|.|.|.+.+..+. ..++.|.|
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~-~~~~~l~v 95 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPVK-TSKAYLTV 95 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecCc-cEEEEEEC
Confidence 68999999999999999999995444 66666654
No 239
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.18 E-value=0.00065 Score=50.90 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=40.2
Q ss_pred eccCcee----eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEE
Q psy7040 638 SLMPISL----ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~----~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~ 697 (716)
|.|.+.+ .+.|++++..+.... ..+.|..+..++.|.|+|.|.|..|. .+.+..|.
T Consensus 19 l~C~~~~~p~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 19 LTCSVSGNPPPQVQWYKNGSPINSSQ----NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp EEEEEESSSSSEEEEEETTEEEEEES----SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEcccceeeeeeeeeeeeeeee----eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 4555444 899999998887541 22778899999999999999996652 23444443
No 240
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.12 E-value=0.00055 Score=48.55 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=33.1
Q ss_pred eccCc-ee----eEEEEeCCeEeeeccccee--------eEEEEccCCCCCcEEEEEEE
Q psy7040 638 SLMPI-SL----ESQYLMNDKRVTIDNVDYF--------TKITIRPLQRSDTAQYTVTA 683 (716)
Q Consensus 638 ~~~~~-~~----~~~W~~~~~~~~~~~~~~~--------~~~~i~~l~~~~~y~y~~~a 683 (716)
|.|.+ .+ .+.|++++..+........ ..|.|.++.++|+|.|+|.|
T Consensus 6 L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 6 LTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 66666 22 9999998765544411111 23999999999999999986
No 241
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.07 E-value=0.0019 Score=49.56 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=49.9
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
..+..|+.+.|.|... .+...+.|++++...... ..........+.|.++.+.+.|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4578999999999764 667789999988753211 1122345668999999999999999999986
No 242
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.04 E-value=0.0049 Score=48.94 Aligned_cols=80 Identities=24% Similarity=0.327 Sum_probs=58.1
Q ss_pred CCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEe---cccCCCeEEecCCC--CCcEEEEEEE
Q psy7040 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV---GKTREPEMDVTGLT--PGHEYKFRVK 128 (716)
Q Consensus 54 ~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~L~--~~~~y~~~v~ 128 (716)
.+++|.++++... .-...|+|+++... .+-..|.|+|+..+.+.|..+ .....+.+.|++.. +...|.+||+
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~--~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGPGS--PPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEESTTS--SSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCCCC--CCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence 3445555555555 44689999985422 347789999997778889876 44556889998855 7889999999
Q ss_pred EEecCccC
Q psy7040 129 ALNKEGES 136 (716)
Q Consensus 129 a~~~~g~~ 136 (716)
|..+...|
T Consensus 98 A~~~~~~S 105 (107)
T PF01108_consen 98 AEVGNQTS 105 (107)
T ss_dssp EEETTEEE
T ss_pred EEeCCccC
Confidence 98766544
No 243
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.04 E-value=0.00088 Score=49.36 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=40.5
Q ss_pred EEEEEEEeccC-CCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040 444 FEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 503 (716)
Q Consensus 444 ~~~~~~v~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n 503 (716)
+.|.|.+.+.+ .+.+.|+ ..... ..............|.|.++...+.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~--~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPS--FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEE--EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCc--eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 89999998888 8899999 11111 0111112222356899999999999999999987
No 244
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.03 E-value=0.00082 Score=51.26 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=39.3
Q ss_pred eccCcee-----eEEEEeCCeEeee--c----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTI--D----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~--~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
|.|.... .+.|++++..+.. + .......|.|.++...|+|.|.|.|.|.....
T Consensus 23 L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 23 LFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred EeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 5564443 8999999875421 1 12234789999999999999999999987655
No 245
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.03 E-value=0.0078 Score=47.87 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=51.6
Q ss_pred CCeEEEEEEEeccC------------CCeEEEEeCCe--E---e---------cc--CCcEEEEe---CCCeEEEEECCC
Q psy7040 441 GSNFEFDINVIGEP------------IPTKEWLCNDI--T---I---------IS--KDRFKIVN---DDKSTKLKVFDS 489 (716)
Q Consensus 441 g~~~~~~~~v~~~p------------~~~~~W~~~~~--~---~---------~~--~~~~~~~~---~~~~~~l~i~~l 489 (716)
|+.+.|.|...... .+.+.|++... . + .. ..++.+.. .....+|.|.++
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 66778888775432 35788887421 0 0 00 12333332 336789999999
Q ss_pred CCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 490 ~~~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
+..|.|.|+|.+.+..........+.+.
T Consensus 82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 82 RSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred ccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 9999999999999877777777666654
No 246
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.02 E-value=0.011 Score=47.03 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=53.1
Q ss_pred CCeEEEEEEEeccC------CCeEEEEeCC---e-E--e--ccC--------CcEEEE---eCCCeEEEEECCCCCCCce
Q psy7040 441 GSNFEFDINVIGEP------IPTKEWLCND---I-T--I--ISK--------DRFKIV---NDDKSTKLKVFDSKRGDSG 495 (716)
Q Consensus 441 g~~~~~~~~v~~~p------~~~~~W~~~~---~-~--~--~~~--------~~~~~~---~~~~~~~l~i~~l~~~~~~ 495 (716)
|+.+.|.|.....+ ...+.|++.. . . + ... .+.++. ......+|.|.+++..|.|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 67788999887653 4578999862 1 0 0 011 111111 1235789999999999999
Q ss_pred eEEEEEEcCCCceeeEEEEEEE
Q psy7040 496 IYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 496 ~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
.|.|.+.+..+.....+.+.|.
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEEE
Confidence 9999999987777777776664
No 247
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.01 E-value=0.0039 Score=49.64 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=51.9
Q ss_pred EEecCCeEEEEEEEecc-CCCeEEEEeCCeE-----e------------ccCCcEEEEeCC--CeEEEEECCCCCCCcee
Q psy7040 437 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I------------ISKDRFKIVNDD--KSTKLKVFDSKRGDSGI 496 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~l~~~~~~~ 496 (716)
.+..|+.+.|.|.+... +...+.|++.... + ....++.+.... ...+|.|.+++.+|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999876 6778999985431 0 012334443333 56799999999999999
Q ss_pred EEEEEEcCCC
Q psy7040 497 YTLAVKNSWG 506 (716)
Q Consensus 497 y~~~a~n~~g 506 (716)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987664
No 248
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.00 E-value=0.0028 Score=47.62 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=40.8
Q ss_pred eccCcee-----eEEEEeCCeEeeecc------c-c----eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN------V-D----YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~------~-~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
|.|.+.| .+.|+++|+.+.... . + ....|.|.....++.+.|+|.|.|..........++
T Consensus 4 L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 4 LTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 5555554 889999998765431 1 1 124677777777888999999999876664444443
No 249
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.00 E-value=0.0052 Score=49.30 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred ccEEEecCCeEEEEEEEeccCCCeEEEEeCCeE--ec----------------cCCcEEEEeCC-CeEEEEECCCCCCCc
Q psy7040 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--II----------------SKDRFKIVNDD-KSTKLKVFDSKRGDS 494 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~--~~----------------~~~~~~~~~~~-~~~~l~i~~l~~~~~ 494 (716)
..+.+.+|+.+.|.|.+.+ +...+.|++.... .. ...++.+.... ....|.|.+++++|+
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 4578999999999999987 6778999986421 00 12334433332 567899999999999
Q ss_pred eeEEEEEEcCC
Q psy7040 495 GIYTLAVKNSW 505 (716)
Q Consensus 495 ~~y~~~a~n~~ 505 (716)
|.|.|.+.+..
T Consensus 85 g~Y~Ca~~~~~ 95 (110)
T cd05899 85 AVYLCASSLGG 95 (110)
T ss_pred EEEEEEeeCCC
Confidence 99999997653
No 250
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=96.95 E-value=0.0037 Score=47.79 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=43.9
Q ss_pred eEEEEeCCeEeeec-----------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 645 ESQYLMNDKRVTID-----------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 645 ~~~W~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
.+.|.+++..+... ...+...|.+..|+..++|.|+|.|.|+.+..+.++.|.|.+
T Consensus 35 ~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~~ 101 (101)
T cd05860 35 HQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVNT 101 (101)
T ss_pred eeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEeC
Confidence 47888776543322 112447899999999999999999999999999999888763
No 251
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=96.95 E-value=0.0023 Score=49.09 Aligned_cols=54 Identities=19% Similarity=0.099 Sum_probs=40.8
Q ss_pred eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|+|++..+.... ......|.|..+..+|+|.|.|.+.|.-.-.+.+..|+|
T Consensus 42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 689999864443321 122378999999999999999999998877777766654
No 252
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.93 E-value=0.0021 Score=47.81 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=44.6
Q ss_pred eccCcee---eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL---ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~---~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
|.|...+ .+.|+++|..+..+ ......-+.|..+.+.|+|.|.|.|. +.|.....+++.+.
T Consensus 16 L~C~~~s~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~ 81 (85)
T cd05872 16 LPCQLRSNLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLN 81 (85)
T ss_pred EECCCCCCCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEE
Confidence 6677666 99999999987653 12222558899999999999999987 67776555444443
No 253
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=96.91 E-value=0.0025 Score=48.71 Aligned_cols=37 Identities=32% Similarity=0.394 Sum_probs=30.9
Q ss_pred eEEEEccCCCCCcEEEEEEEE-cCCCCceeeEEEEEec
Q psy7040 664 TKITIRPLQRSDTAQYTVTAT-NSQGKDQVFIEVVVTD 700 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~-n~~G~~~~s~~l~v~~ 700 (716)
..|.|.++.+.|+|.|.|.|. |..|.......|.|..
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 579999999999999999998 5777667777777753
No 254
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.90 E-value=0.0023 Score=49.10 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=32.9
Q ss_pred eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040 645 ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNS 686 (716)
Q Consensus 645 ~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~ 686 (716)
.+.|+++|...... .......|.|..+.++|+|+|+|.+.|.
T Consensus 31 ~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 31 EYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 77888887753321 2344578999999999999999999986
No 255
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.81 E-value=0.015 Score=46.26 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCeEEEEEEEeccC------CCeEEEEeCCeE-------e-cc----------CCcEEEEe-CCCeEEEEECCCCCCCce
Q psy7040 441 GSNFEFDINVIGEP------IPTKEWLCNDIT-------I-IS----------KDRFKIVN-DDKSTKLKVFDSKRGDSG 495 (716)
Q Consensus 441 g~~~~~~~~v~~~p------~~~~~W~~~~~~-------~-~~----------~~~~~~~~-~~~~~~l~i~~l~~~~~~ 495 (716)
|+.+.|.|.....| ...+.|++.... + .. ..++.+.. .....+|.|.+++..|.|
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG 81 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG 81 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence 67889999887653 356899986411 0 00 12222211 134568999999999999
Q ss_pred eEEEEEEcCCCceeeEEEEEEE
Q psy7040 496 IYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 496 ~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
.|.|.+.+..+.....+.+.|.
T Consensus 82 ~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 82 RYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEecccceEEEEEEEEE
Confidence 9999999988887777766664
No 256
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.77 E-value=0.03 Score=44.96 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=50.2
Q ss_pred cEEEecCCeEEEEEEEecc----CCCeEEEEe---------------CCeEec-cC----CcEEEEe--CCCeEEEEECC
Q psy7040 435 DIKVRAGSNFEFDINVIGE----PIPTKEWLC---------------NDITII-SK----DRFKIVN--DDKSTKLKVFD 488 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~----p~~~~~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~~ 488 (716)
.+.+..|..+.|.|..... +...++|.. ++.... .. .++.+.. .....++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 4678889999999998653 234789933 222221 11 1332222 23567899999
Q ss_pred CCCCCceeEEEEEEcCCCce
Q psy7040 489 SKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 489 l~~~~~~~y~~~a~n~~g~~ 508 (716)
++..|.|.|+|.+.|..+..
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CCcccCEEEEEEEEcCCCcC
Confidence 99999999999999876643
No 257
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.77 E-value=0.015 Score=45.54 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=47.9
Q ss_pred eEEEEEEEeccC---CCeEEEEeCCeE---------------eccCCcEEEEeCC---CeEEEEECCCCCCCceeEEEEE
Q psy7040 443 NFEFDINVIGEP---IPTKEWLCNDIT---------------IISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAV 501 (716)
Q Consensus 443 ~~~~~~~v~~~p---~~~~~W~~~~~~---------------~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~~~a 501 (716)
.+.|.|.+...+ ...+.|++.... .....+.++...+ ...+|.|.++...|.|.|.|.+
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence 457888776543 346888885431 0011112222222 4679999999999999999998
Q ss_pred Ec-CCCceeeEEEEEE
Q psy7040 502 KN-SWGTDKGTAKVTV 516 (716)
Q Consensus 502 ~n-~~g~~~~s~~~~v 516 (716)
.+ ..|.......+.|
T Consensus 82 ~~~~~g~~~~~~~l~V 97 (98)
T cd05718 82 ATFPQGNRQKVTTLTV 97 (98)
T ss_pred EeCCCCcEEEEEEEEe
Confidence 75 5677766666665
No 258
>smart00409 IG Immunoglobulin.
Probab=96.71 E-value=0.0067 Score=45.85 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=41.0
Q ss_pred eEEEEeC-CeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMN-DKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~-~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|+++ +..+... .......|.|.++...|+|.|+|.+.|..|.......|.|
T Consensus 25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 7899997 6655311 1222468999999999999999999998888766666655
No 259
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=96.71 E-value=0.0067 Score=45.85 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=41.0
Q ss_pred eEEEEeC-CeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMN-DKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~-~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.+.|+++ +..+... .......|.|.++...|+|.|+|.+.|..|.......|.|
T Consensus 25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 7899997 6655311 1222468999999999999999999998888766666655
No 260
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.69 E-value=0.011 Score=46.92 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=51.3
Q ss_pred ccEEEecCCeEEEEEEEeccC-CCeEEEEeCCe--E---ec---------cCCcEEEEeCCCeEEEEECCCCCCCceeEE
Q psy7040 434 SDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDI--T---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p-~~~~~W~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~ 498 (716)
..+.+..|+.+.|.|.+.+.. ...+.|++... . +. ...++..........|.|.++.+.|+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 357789999999999987665 56799987531 1 00 112444444445678999999999999999
Q ss_pred EEEEcC
Q psy7040 499 LAVKNS 504 (716)
Q Consensus 499 ~~a~n~ 504 (716)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 998754
No 261
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.66 E-value=0.023 Score=44.60 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=31.2
Q ss_pred CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
...+|.|.++...|.|.|+|.+.|..+.....+.+.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4578999999999999999999998877666666654
No 262
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=96.65 E-value=0.014 Score=45.37 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=27.6
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
..|.|.++..+|+|.|.|.+.+... ...+..|+|
T Consensus 62 ~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 62 LSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred eEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 5799999999999999999998753 455665654
No 263
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.57 E-value=0.014 Score=47.44 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=52.4
Q ss_pred ccEEEecCCeEEEEEEEec--cCCCeEEEEeCCe--Ee-----------------ccCCcEEEEeCC--CeEEEEECCCC
Q psy7040 434 SDIKVRAGSNFEFDINVIG--EPIPTKEWLCNDI--TI-----------------ISKDRFKIVNDD--KSTKLKVFDSK 490 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~--~p~~~~~W~~~~~--~~-----------------~~~~~~~~~~~~--~~~~l~i~~l~ 490 (716)
..+.+..|+.+.|.|.+.+ .+...+.|++... .. ....++.+..+. ....|.|.++.
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 3577889999999999987 6777899998521 10 012345554444 57789999999
Q ss_pred CCCceeEEEEEEc
Q psy7040 491 RGDSGIYTLAVKN 503 (716)
Q Consensus 491 ~~~~~~y~~~a~n 503 (716)
++|.|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999998864
No 264
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.56 E-value=0.0042 Score=47.52 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=24.6
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
..|+|.+|...|+|+|.|.+.|..++.
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~~~ 91 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKEEV 91 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccceE
Confidence 579999999999999999999988754
No 265
>KOG4367|consensus
Probab=96.47 E-value=0.0034 Score=59.52 Aligned_cols=76 Identities=33% Similarity=0.450 Sum_probs=64.9
Q ss_pred EeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCccc
Q psy7040 235 VHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313 (716)
Q Consensus 235 ~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~ 313 (716)
..+++++|.|+.|.. .+.+..+|.++..+.+++.+.++.. +.++.+++.+|.-++.|.-+|.|.|..|.++.+...
T Consensus 450 t~nns~t~~wkqp~~-~~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 450 THNNSATLSWKQPPL-STVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred ccCCceEEEeecCCC-CCCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCccccee
Confidence 467899999997665 4568999999998888888777765 668999999999999999999999999999877664
No 266
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.42 E-value=0.043 Score=43.79 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=51.1
Q ss_pred CCeEEEEEEEeccC----------CCeEEEEeCC--eEec----------cC----CcEEEE---eCCCeEEEEECCCCC
Q psy7040 441 GSNFEFDINVIGEP----------IPTKEWLCND--ITII----------SK----DRFKIV---NDDKSTKLKVFDSKR 491 (716)
Q Consensus 441 g~~~~~~~~v~~~p----------~~~~~W~~~~--~~~~----------~~----~~~~~~---~~~~~~~l~i~~l~~ 491 (716)
|..+.|.|.....+ ...+.|++.. .... .. .++.+. ......+|.|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 66778888886544 2568888752 1100 01 122221 123567899999999
Q ss_pred CCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 492 GDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 492 ~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
.|.|.|.|.+..........+.+.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 99999999998876666666666654
No 267
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.38 E-value=0.019 Score=44.90 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=49.5
Q ss_pred EEecCCeEEEEEEEecc--CCCeEEEEeCCeE--e------------ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEE
Q psy7040 437 KVRAGSNFEFDINVIGE--PIPTKEWLCNDIT--I------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 500 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~--p~~~~~W~~~~~~--~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~ 500 (716)
.+..|+.+.+.|..... ....+.|++.... . ....++.....+....|.|.++++.|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 4567899865421 1 012355555566677899999999999999998
Q ss_pred EEc
Q psy7040 501 VKN 503 (716)
Q Consensus 501 a~n 503 (716)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 268
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.35 E-value=0.028 Score=44.16 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=46.1
Q ss_pred EEecCCeEEEEEEEeccCCCeEEEEeCCeEe--------cc-----------CCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------IS-----------KDRFKIVNDDKSTKLKVFDSKRGDSGIY 497 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~--------~~-----------~~~~~~~~~~~~~~l~i~~l~~~~~~~y 497 (716)
.+..|+.+.|.|.-.-.....+.|+|..... .. ..+..+. .+.+|.|.++...|.|.|
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence 3678999999986544445589999963211 00 1111111 134899999999999999
Q ss_pred EEEEEcCCC
Q psy7040 498 TLAVKNSWG 506 (716)
Q Consensus 498 ~~~a~n~~g 506 (716)
+|.+.+...
T Consensus 86 ~~~v~~~~~ 94 (105)
T cd05774 86 TLQTITTNF 94 (105)
T ss_pred EEEEEeCCc
Confidence 999998874
No 269
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=96.34 E-value=0.91 Score=48.31 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCeEEccccCcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecC
Q psy7040 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTP 347 (716)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~ 347 (716)
.+|..... .....+.+.+|-+| .|.++|+|.|..|.......+..+.+..+..+|..+..+..... .-.+.|.|-.
T Consensus 649 ~~~vta~r--t~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~d 724 (952)
T COG4733 649 GNWITAPR--TSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGD 724 (952)
T ss_pred CceEeccc--ccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEec
Confidence 35666555 45788999999995 79999999999987655554445555555555544444443322 2357788877
Q ss_pred CCCCCCccceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCCCC
Q psy7040 348 PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 410 (716)
Q Consensus 348 p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~ 410 (716)
|.. .-.+..-.+++......+......-........-.+|+++..|.|+++++|..|.+.+
T Consensus 725 Pt~--~~d~~~sei~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 725 PTG--AVDITSTEIRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred CCc--ceEEeeeeeeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeeccccccccc
Confidence 541 1112222222222211111000000111122223689999999999999999987643
No 270
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.27 E-value=0.045 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.9
Q ss_pred eEEEEccCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy7040 664 TKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVV 698 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n-~~G~~~~s~~l~v 698 (716)
.++.|.+|+..|.|.|+|...| ..|..+....|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 7899999999999999999999 6787777777776
No 271
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.26 E-value=0.05 Score=43.88 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=49.2
Q ss_pred ccEEEecCCeEEEEEEEeccC----CCeEEEEeC----CeE--e---c------cCCcE--EEEe----CCCeEEEEECC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----DIT--I---I------SKDRF--KIVN----DDKSTKLKVFD 488 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p----~~~~~W~~~----~~~--~---~------~~~~~--~~~~----~~~~~~l~i~~ 488 (716)
..+.+..|+.+.|.|.....+ ...+.|++. +.. + . ...++ ++.. .....+|.|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 457899999999999986543 235899742 111 1 0 11111 1111 23456899999
Q ss_pred CCCCCceeEEEEEEcCCCc
Q psy7040 489 SKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 489 l~~~~~~~y~~~a~n~~g~ 507 (716)
+++.|.|.|.|.+.|..+.
T Consensus 86 v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CChhhCEEEEEEEEeCCCC
Confidence 9999999999999986653
No 272
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.25 E-value=0.036 Score=43.08 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=46.1
Q ss_pred cCCeEEEEEEEec-cCCCeEEEEeCCeEec-------------cCCc--EEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040 440 AGSNFEFDINVIG-EPIPTKEWLCNDITII-------------SKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 503 (716)
Q Consensus 440 ~g~~~~~~~~v~~-~p~~~~~W~~~~~~~~-------------~~~~--~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n 503 (716)
.|+.+.|.|.+.. .....+.|++...... .... -++..+....+|.|.+++..|.|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 4677778886644 4455677876532111 0111 1334445568999999999999999999998
Q ss_pred CCCce
Q psy7040 504 SWGTD 508 (716)
Q Consensus 504 ~~g~~ 508 (716)
..|..
T Consensus 83 ~~~~~ 87 (97)
T cd05775 83 KNGVT 87 (97)
T ss_pred CCCCe
Confidence 87654
No 273
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.05 E-value=0.054 Score=41.68 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=45.5
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEecc----------------CCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIIS----------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~----------------~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
|+.+.|.|.+.......+.|++....... ...-++.... ..+|.|.++++.|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-NGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-CceEEEccCCchhcEEEEEEEEcC
Confidence 56778888877766778889876532110 0011122222 368999999999999999999987
Q ss_pred CCce
Q psy7040 505 WGTD 508 (716)
Q Consensus 505 ~g~~ 508 (716)
.|..
T Consensus 80 ~~~~ 83 (92)
T cd05741 80 NGVT 83 (92)
T ss_pred CCcE
Confidence 7543
No 274
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.04 E-value=0.014 Score=46.46 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCCCceEEEEeCCeEEEEecCCCC-----CCC------CccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEE
Q psy7040 57 PEGPLEVSNIHKDGCTLKWNKPKD-----DGG------EPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKF 125 (716)
Q Consensus 57 p~~~l~~~~~~~~s~~l~W~~p~~-----~~~------~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~ 125 (716)
||. +.+ ....++|.|.+.+|.. ..+ .+-..|.|.++..++.............+.|.+|.|++.|-+
T Consensus 5 PP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv 82 (106)
T PF09294_consen 5 PPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCV 82 (106)
T ss_dssp SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEE
T ss_pred CCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEE
Confidence 444 555 7788899999998851 111 012459999888777633333444456789999999999999
Q ss_pred EEEEE
Q psy7040 126 RVKAL 130 (716)
Q Consensus 126 ~v~a~ 130 (716)
+|+|.
T Consensus 83 ~V~~~ 87 (106)
T PF09294_consen 83 SVQAF 87 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99993
No 275
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=96.02 E-value=0.013 Score=43.03 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.5
Q ss_pred ceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040 661 DYFTKITIRPLQRSDTAQYTVTATN 685 (716)
Q Consensus 661 ~~~~~~~i~~l~~~~~y~y~~~a~n 685 (716)
.....|.|.++..+|.|.|+|.|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3448899999999999999999988
No 276
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.00 E-value=0.019 Score=44.53 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=32.7
Q ss_pred CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v 219 (716)
.+.+|.|.+|+..|+|.|+|...| ..|..+..+.|+|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 468999999999999999999999 7887888887776
No 277
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.96 E-value=0.044 Score=40.40 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=42.6
Q ss_pred eccCcee-----eEEEEeCCeEeeeccc---------ceeeEEEEccCCCCCcEEEEEEEEcCCCC-ceeeEEEEEe
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDNV---------DYFTKITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~~---------~~~~~~~i~~l~~~~~y~y~~~a~n~~G~-~~~s~~l~v~ 699 (716)
+.|.+.| .|+|++++.++..... .....|.|.--..+|.-.|+|+|.|.+=. ...+..|.|.
T Consensus 4 L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 4 LNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6677777 9999999988876411 12256777666666777999999997532 2455556654
No 278
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=95.85 E-value=0.026 Score=44.32 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=31.8
Q ss_pred CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v 219 (716)
...+|+|.+++..|+|.|+|.+.|..+..+..+.|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4678999999999999999999998887777676665
No 279
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.80 E-value=0.058 Score=39.76 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=42.0
Q ss_pred EEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCC---CeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 444 FEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 444 ~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
+.+.|.+ .++|.+.+.|++++.++...........+ ....|.|..-..+|.-.|+|+|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 4678887 56788899999999998654321111111 23466666666666778999998865
No 280
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.80 E-value=0.033 Score=42.93 Aligned_cols=67 Identities=7% Similarity=-0.058 Sum_probs=46.7
Q ss_pred EEEecCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 503 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n 503 (716)
..+..|+.++|.|...- ....+.|++++...................+.|..+.+++.|.|+|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 45789999999996643 55679999988653211000011123455889999999999999999863
No 281
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.77 E-value=0.094 Score=39.22 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=40.8
Q ss_pred EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCCe------EEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS------TKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
+.|.|.+.+ .|.+.+.|++++..+..... .+...+.. ..+.+.....++...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 478899865 58899999999988765432 22222221 23444445556667888888876643
No 282
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.76 E-value=0.021 Score=39.51 Aligned_cols=44 Identities=7% Similarity=-0.017 Sum_probs=34.5
Q ss_pred eccCceeeEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040 638 SLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685 (716)
Q Consensus 638 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n 685 (716)
+.|.....+.|++ |..+... ....+.+..+..+..|.|+|.+.|
T Consensus 11 L~C~~~tsi~W~k-G~~~~~~---~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 11 LKCNGATNITWKK-GKEILEV---SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred EEecCCCcEEEec-Ccccccc---cccEEeccCcccCCCcceEecCcc
Confidence 6676544899999 6555433 257899999999999999999887
No 283
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.67 E-value=0.16 Score=40.33 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=31.1
Q ss_pred CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
...+|.|.++.+.|.|.|+|............+.+.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 57899999999999999999999866666666666554
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=95.67 E-value=0.034 Score=43.51 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=30.9
Q ss_pred CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v 219 (716)
.+.+|+|.+++..|+|.|.|.+.+ ..|..+..+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 467899999999999999999998 6676666666665
No 285
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=95.59 E-value=0.024 Score=45.08 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=34.3
Q ss_pred eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
...+|.|.+++..|+|+|+|.+.|..+.......|.|..
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 347899999999999999999999888888888888764
No 286
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.59 E-value=0.049 Score=43.35 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~ 221 (716)
..+.+|+|.+++..|+|.|+|...+........+.|.|..
T Consensus 71 ~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 71 PSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred CCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 3578999999999999999999997777777777777654
No 287
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=95.52 E-value=0.16 Score=41.07 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=48.2
Q ss_pred ccEEEecCCeEEEEEEEeccC----CCeEEEEeCCe------Ee---c-------cCCc----EEEEe--CCCeEEEEEC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCNDI------TI---I-------SKDR----FKIVN--DDKSTKLKVF 487 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p----~~~~~W~~~~~------~~---~-------~~~~----~~~~~--~~~~~~l~i~ 487 (716)
..+.+..|..+.|.|...... ...+.|++... .+ . ...+ +.+.. ..+..+|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 357788999999999986432 24589975321 00 0 0111 11111 1234689999
Q ss_pred CCCCCCceeEEEEEEcCCC
Q psy7040 488 DSKRGDSGIYTLAVKNSWG 506 (716)
Q Consensus 488 ~l~~~~~~~y~~~a~n~~g 506 (716)
++++.|.|.|.|.+.|...
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997654
No 288
>KOG3632|consensus
Probab=95.51 E-value=0.12 Score=55.38 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=53.5
Q ss_pred cCCCCCCCCeEEe-EEeCCeEEEEEECCCCC-----CCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCC-CCe
Q psy7040 221 DKPSPPGGPLKVS-NVHAEGVTLDWKVPDDD-----GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIP-NHK 293 (716)
Q Consensus 221 ~~p~~p~~~~~~~-~~~~~~~~l~W~~p~~~-----~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~~~ 293 (716)
.+|.+|.. +.+. ......+.++|.+|..+ +|..+++|.++.. ......+.........+.+..|+. ...
T Consensus 767 Gppappld-V~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyad---gqkv~Evafptagst~VelsQlq~~l~~ 842 (1335)
T KOG3632|consen 767 GPPAPPLD-VKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD---GQKVEEVAFPTAGSTKVELSQLQDGLYH 842 (1335)
T ss_pred CCCCCchh-eeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeC---CceeeeeecccCCceEEEeeeehhhhee
Confidence 45666655 4443 23567799999987643 6667889988753 333333333333445566666665 445
Q ss_pred EEEEEEEEcCCCCCCCCccc
Q psy7040 294 YKFRVRAVNKQGKSEPLTTT 313 (716)
Q Consensus 294 y~~~v~a~n~~g~~~~~~~~ 313 (716)
..+.|+.....|.+..+...
T Consensus 843 ~~V~vRtms~~gesvdsipA 862 (1335)
T KOG3632|consen 843 GAVGVRTMSVPGESVDSIPA 862 (1335)
T ss_pred cceeEEecccCccccccccc
Confidence 56777777777766544443
No 289
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=95.51 E-value=0.064 Score=41.38 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=45.8
Q ss_pred EEecCCeEEEEEEEec-cCCCe--EEEEeCCeEeccCCcEEE--EeCCCeEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040 437 KVRAGSNFEFDINVIG-EPIPT--KEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~-~p~~~--~~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g 506 (716)
.+.+|..+.+.|.+.+ +|.+. +.|++++..+........ ........+.+.--..++.-.|+|.|.+..+
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 3678999999999954 67776 699999998854321110 0111234566654444455589999987654
No 290
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.44 E-value=0.14 Score=38.23 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=39.9
Q ss_pred EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
+.|.|.+.+ .|.+.+.|++++..+.... .......+ ...+.+.--..++...|+|.|.+.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 468899855 5888999999998876433 11111111 1234443334445679999999876543
No 291
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.43 E-value=0.16 Score=40.33 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEe-eecCCCCeEEecCCC--CCCeEEEEEE
Q psy7040 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA-QTEGDTPKGKVLDLI--EGNQYEFRVL 400 (716)
Q Consensus 324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~--~~~~Y~~~v~ 400 (716)
...+|.++++... +-...|+|+++.... .-..|.|+++......|.... -......++.+.+.. ....|.++|+
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~~--~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGPGSP--PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEESTTSS--STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCCCCC--CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence 3456888888755 556899999943222 457899999966668888772 334556777777644 6889999999
Q ss_pred EEeCCCC
Q psy7040 401 AVNKGGP 407 (716)
Q Consensus 401 a~n~~g~ 407 (716)
|......
T Consensus 98 A~~~~~~ 104 (107)
T PF01108_consen 98 AEVGNQT 104 (107)
T ss_dssp EEETTEE
T ss_pred EEeCCcc
Confidence 9876543
No 292
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=95.42 E-value=0.045 Score=43.48 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=34.3
Q ss_pred CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~ 221 (716)
...+|.|.+++..|+|.|.|.+.+..+.....+.|.|..
T Consensus 66 ~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 66 LDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 357899999999999999999999888888888887764
No 293
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.41 E-value=0.13 Score=38.47 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=37.8
Q ss_pred EEEEEEEec-cCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCC
Q psy7040 444 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWG 506 (716)
Q Consensus 444 ~~~~~~v~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g 506 (716)
+.+.|.+.+ .|...++|++++..+............+ ...+.+..-..++...|+|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 468898865 7788999999999875433222211111 22444444445556677777776543
No 294
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=95.40 E-value=0.053 Score=43.28 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=34.6
Q ss_pred CCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEec
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~ 221 (716)
....+|+|.+++..|+|.|.|.+.......+..+.|.|..
T Consensus 69 ~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 69 RGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 3567899999999999999999998777788888888764
No 295
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=95.32 E-value=0.21 Score=38.37 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCeEEEEECCCCCCCceeEEEEEEc-CCCceeeEEEEEE
Q psy7040 479 DKSTKLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTV 516 (716)
Q Consensus 479 ~~~~~l~i~~l~~~~~~~y~~~a~n-~~g~~~~s~~~~v 516 (716)
....++.|.++...|.|.|+|...+ ..|....+..+.|
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 3467999999999999999999765 6787777777765
No 296
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.31 E-value=0.15 Score=41.13 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=51.0
Q ss_pred ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCe-----Eec--------------cCCcEEEEeC--CCeEEEEECCCCC
Q psy7040 434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDI-----TII--------------SKDRFKIVND--DKSTKLKVFDSKR 491 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~l~~ 491 (716)
..+.+..|..+.|.|... ......+.|++... .+. -..+..+... ....+|.|.++.+
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 457899999999999998 45666899998432 000 0112222222 3467899999999
Q ss_pred CCceeEEEEEEcC
Q psy7040 492 GDSGIYTLAVKNS 504 (716)
Q Consensus 492 ~~~~~y~~~a~n~ 504 (716)
.|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999876
No 297
>PHA03376 BARF1; Provisional
Probab=95.26 E-value=1.2 Score=38.26 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=68.3
Q ss_pred EEEecCCeEEEEEEEe---ccCCCeEEEEeCCe----Eec-------------cCCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040 436 IKVRAGSNFEFDINVI---GEPIPTKEWLCNDI----TII-------------SKDRFKIVNDDKSTKLKVFDSKRGDSG 495 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~---~~p~~~~~W~~~~~----~~~-------------~~~~~~~~~~~~~~~l~i~~l~~~~~~ 495 (716)
+....|+.+.|.|... ..+..++.|++.+. .+- .-..+.+..++++.+|.|.++.+.|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4567788889999765 22445788998422 110 011223334468889999999999999
Q ss_pred eEEEEEEcCCCceeeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEEecCCCceeeeEEEcc
Q psy7040 496 IYTLAVKNSWGTDKGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTN 557 (716)
Q Consensus 496 ~y~~~a~n~~g~~~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~w~~~~ 557 (716)
.|+|.........-..-.+.+. .++|+-.+-..+-.. ..--+|.....+=++|...|....
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~-~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC-CCeeEEEEecCCcCCchheecccc
Confidence 9999998765444333333333 233444441111000 111233333333356668887654
No 298
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=95.26 E-value=0.019 Score=43.78 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=37.3
Q ss_pred eccC-cee----eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcE-EEEEEEEcCCCC
Q psy7040 638 SLMP-ISL----ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTA-QYTVTATNSQGK 689 (716)
Q Consensus 638 ~~~~-~~~----~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y-~y~~~a~n~~G~ 689 (716)
|.|. ..| .+.|++++...... .......|.|.++...|.| .|.|.|.|....
T Consensus 23 L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 23 LPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred EEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 6675 344 89999876442222 1222379999999999999 899999997643
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=95.20 E-value=0.071 Score=41.69 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=29.3
Q ss_pred eeEEEEccCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVV 698 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n-~~G~~~~s~~l~v 698 (716)
..+|.|.+|...|+|+|.|.+.| ..|..+....|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 36799999999999999999998 5666555565655
No 300
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=95.17 E-value=0.49 Score=37.76 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.9
Q ss_pred CeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEEE
Q psy7040 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517 (716)
Q Consensus 480 ~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~ 517 (716)
...+|.|.++...|.|.|+|...+..........+.+.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 46899999999999999999999888877777777664
No 301
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.15 E-value=0.25 Score=42.36 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=58.4
Q ss_pred ccEEEecCCeEEEEEEEe-ccCCCeEEEEeCCeEec----------c--CCcEE-EEeCCCeEEEEECCCCCCCceeEEE
Q psy7040 434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII----------S--KDRFK-IVNDDKSTKLKVFDSKRGDSGIYTL 499 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~-~~p~~~~~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~~ 499 (716)
..+.+.+|+.+.|.|... ....+.++|.+....+. + .+++. +........+.|.++...|.|.|.|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 357789999999999984 66788899998743221 1 12333 2333456789999999999999999
Q ss_pred EEEcC-CC-ceeeEEEEEEE
Q psy7040 500 AVKNS-WG-TDKGTAKVTVL 517 (716)
Q Consensus 500 ~a~n~-~g-~~~~s~~~~v~ 517 (716)
....- .| ..+....+.+.
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EEEecCCCCCceeEEEEEEE
Confidence 87653 34 44555555555
No 302
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.10 E-value=0.096 Score=40.55 Aligned_cols=69 Identities=23% Similarity=0.200 Sum_probs=46.5
Q ss_pred ecCCeEEEEEEEecc-C-CCeEEEEeCCeEeccCCc-EEEEeCC--C---eEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 439 RAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDR-FKIVNDD--K---STKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 439 ~~g~~~~~~~~v~~~-p-~~~~~W~~~~~~~~~~~~-~~~~~~~--~---~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
..+..+.|.|.+.+. | ...+.|++++..+..... ....... . ...|.+......+.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 357788999999987 5 368999999988765443 2222111 1 123555555555899999999887653
No 303
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.02 E-value=0.15 Score=41.26 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=50.5
Q ss_pred ccEEEecCCeEEEEEEEecc-CCCeEEEEeCCe--E---e---------ccCCcEEEEe--CCCeEEEEECCCCCCCcee
Q psy7040 434 SDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDI--T---I---------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGI 496 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~--~---~---------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~ 496 (716)
..+.+..|+.+.|.|..... ....+.|++... . + ...+++.+.. ......|.|.++++.|.|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 35779999999999998654 456789997421 1 0 0124455442 3456789999999999999
Q ss_pred EEEEEEc
Q psy7040 497 YTLAVKN 503 (716)
Q Consensus 497 y~~~a~n 503 (716)
|.|.+.+
T Consensus 87 Y~C~~~~ 93 (116)
T cd07706 87 YFCALST 93 (116)
T ss_pred EEEEEEC
Confidence 9999875
No 304
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.00 E-value=0.096 Score=39.18 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=35.1
Q ss_pred eccCcee-----eEEEEeCCeEeeecc-------cc--ee--eEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN-------VD--YF--TKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~-------~~--~~--~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
|.|.+.| .++|+++|+++.... .+ ++ ..+.+.-...++...|+|.|.+.....
T Consensus 4 LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 4 LRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 5566665 899999998765531 11 11 334444455667789999999987655
No 305
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=94.99 E-value=0.1 Score=40.73 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=31.3
Q ss_pred CccEEEEeccccCcceEEEEEEEe-CCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~~v 219 (716)
...+|+|.+++..|+|.|.|.+.+ ..|.......|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 467999999999999999999875 6677777777766
No 306
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=94.99 E-value=0.18 Score=40.14 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=34.9
Q ss_pred eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
...+|.|.+|+..|+|.|+|...+..........|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 348999999999999999999999998888888888764
No 307
>KOG4152|consensus
Probab=94.55 E-value=0.18 Score=49.78 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=72.3
Q ss_pred EEEcCCCCCCeEEEEEEEEcCCCCCccceeee----ccCCCCCCccceeec--cceeEEEEE-----EeeEEEEeeeecc
Q psy7040 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV----VTDKPSAPEGPIQWL--LTLTDVTWE-----ISNYLQELHSSLM 640 (716)
Q Consensus 572 ~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~----v~~~p~~~~~~~~~~--~~~v~l~w~-----i~~y~v~~~~~~~ 640 (716)
..-..|-+|+.|.|+|.|.|..|.++++.... ++..|..|. -..+. -..+.|.|. -.|-+++|..+..
T Consensus 649 ~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS-~~ri~k~~eGi~l~weppt~p~sg~Iieys~ylA 727 (830)
T KOG4152|consen 649 PVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPS-GARIKKTIEGISLVWEPPTKPGSGTIIEYSPYLA 727 (830)
T ss_pred ccccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcc-cccccccccceeecccCCCCCCCcceEEeehhhH
Confidence 34457889999999999999999999988777 466666665 33333 447889998 3455555544211
Q ss_pred Cce-----e--eEEEEeCCeEeeec--ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEE
Q psy7040 641 PIS-----L--ESQYLMNDKRVTID--NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695 (716)
Q Consensus 641 ~~~-----~--~~~W~~~~~~~~~~--~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~ 695 (716)
-.. + ++-.++.---+..+ ....+----+.+.....+..|++.|.|+.|.+.....
T Consensus 728 i~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqv 791 (830)
T KOG4152|consen 728 IITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQV 791 (830)
T ss_pred hhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEE
Confidence 000 0 22222211000000 0000111112344457789999999999999866543
No 308
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.44 E-value=0.25 Score=35.16 Aligned_cols=61 Identities=28% Similarity=0.293 Sum_probs=44.8
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcE----EEEeCCCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRF----KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
.+.|.+.+.+...+.|++.+......... ..........+.|.++...+.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 57788887778889999988765433211 11122346689999999999999999998776
No 309
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=94.38 E-value=0.12 Score=40.95 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred cEEEeeeCCeEEEEecCCC-----CCCCcc------ceEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040 331 PEIKDFDTDFVELAWTPPE-----QNGGSP------IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399 (716)
Q Consensus 331 ~~~~~~~~~~i~l~W~~p~-----~~~~~~------i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v 399 (716)
+.+ ...++.|.|.+.+|. ...+.. -..|.|.+...++. ............+.|.+|.|++.|-++|
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~~~~~~~~~l~~L~p~t~YCv~V 84 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEIETKNSSVTLSDLKPGTNYCVSV 84 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEEESSSEEEEEES--TTSEEEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEEeecCCEEEEeCCCCCCCEEEEE
Confidence 666 577889999999875 111101 24699998887755 2222334566778999999999999999
Q ss_pred EEEe
Q psy7040 400 LAVN 403 (716)
Q Consensus 400 ~a~n 403 (716)
+|..
T Consensus 85 ~~~~ 88 (106)
T PF09294_consen 85 QAFS 88 (106)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9943
No 310
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.37 E-value=0.25 Score=39.26 Aligned_cols=67 Identities=21% Similarity=0.273 Sum_probs=46.4
Q ss_pred EEecCCeEEEEEEEecc-CCCeEEEEeCCeE---e--------c-----------cCCcEEEE--eCCCeEEEEECCCCC
Q psy7040 437 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT---I--------I-----------SKDRFKIV--NDDKSTKLKVFDSKR 491 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~-p~~~~~W~~~~~~---~--------~-----------~~~~~~~~--~~~~~~~l~i~~l~~ 491 (716)
.++.|+.+.|.|.+... ....+.|++.... . . ...++.+. .......|.|.++++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998763 3457999975431 0 0 01234332 233456799999999
Q ss_pred CCceeEEEEEEc
Q psy7040 492 GDSGIYTLAVKN 503 (716)
Q Consensus 492 ~~~~~y~~~a~n 503 (716)
+|.|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998863
No 311
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=94.36 E-value=0.15 Score=38.00 Aligned_cols=53 Identities=11% Similarity=0.022 Sum_probs=33.4
Q ss_pred eccCcee-----eEEEEeCCeEeeecc------cc----eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN------VD----YFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~------~~----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
+.|.+.| .+.|+++|+++.... .+ ....+.+.--..++...|+|.|.|.....
T Consensus 4 L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 4 LTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 5565554 899999998875331 11 11234443334455679999999987664
No 312
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=94.27 E-value=0.1 Score=41.72 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred eeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 662 YFTKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
....|.|.+++.+|+|.|.|.+.+..|
T Consensus 68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 68 KSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 447899999999999999999998654
No 313
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=94.27 E-value=0.13 Score=39.56 Aligned_cols=41 Identities=5% Similarity=0.139 Sum_probs=31.0
Q ss_pred eEEEEeCCeEeeec------ccceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040 645 ESQYLMNDKRVTID------NVDYFTKITIRPLQRSDTAQYTVTATN 685 (716)
Q Consensus 645 ~~~W~~~~~~~~~~------~~~~~~~~~i~~l~~~~~y~y~~~a~n 685 (716)
.+.|+|+|...... .......|.|..+.++|+|.|+|...-
T Consensus 30 ~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 30 RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 68899987653221 133457899999999999999999753
No 314
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.26 E-value=0.46 Score=35.15 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=49.9
Q ss_pred EEecCCeEEEEEEEeccCCC--eEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEE
Q psy7040 437 KVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~ 514 (716)
.+-.|+.+.|+|.....+.| .++|...+..... ....+...|.+..+...|+|.++|...-..-.......+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 46789999999988554444 8999977654321 111245589999999999999999996443333344443
Q ss_pred E
Q psy7040 515 T 515 (716)
Q Consensus 515 ~ 515 (716)
.
T Consensus 84 ~ 84 (88)
T cd07694 84 K 84 (88)
T ss_pred E
Confidence 3
No 315
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=94.26 E-value=0.34 Score=37.64 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCeEEEEEEEeccCC-CeEEEEeCCeE----ec-----------c--CCcEEE-EeCCCeEEEEECCCCCCCceeEEEEE
Q psy7040 441 GSNFEFDINVIGEPI-PTKEWLCNDIT----II-----------S--KDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAV 501 (716)
Q Consensus 441 g~~~~~~~~v~~~p~-~~~~W~~~~~~----~~-----------~--~~~~~~-~~~~~~~~l~i~~l~~~~~~~y~~~a 501 (716)
|+.+.|.|....... ..+.|++.... +. . ..+..+ .......+|.|.++..+|.|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 566788887654432 35888874321 00 0 111111 11235678999999999999999997
Q ss_pred Ec-CCCceeeEEEEEE
Q psy7040 502 KN-SWGTDKGTAKVTV 516 (716)
Q Consensus 502 ~n-~~g~~~~s~~~~v 516 (716)
.+ ..|.....+.++|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 4555555555544
No 316
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.25 E-value=0.25 Score=38.98 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=46.4
Q ss_pred EecCCeEEEEEEEeccCCCeEEEEeCCeE-------e---cc------------CCcEEEEeCCCeEEEEECCCCCCCce
Q psy7040 438 VRAGSNFEFDINVIGEPIPTKEWLCNDIT-------I---IS------------KDRFKIVNDDKSTKLKVFDSKRGDSG 495 (716)
Q Consensus 438 ~~~g~~~~~~~~v~~~p~~~~~W~~~~~~-------~---~~------------~~~~~~~~~~~~~~l~i~~l~~~~~~ 495 (716)
+..|+.+.|.|.+.......+.|++.... + .. ..++..........|.|.++++.|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57899999999886555566889875422 0 00 12233334456678999999999999
Q ss_pred eEEEEEEc
Q psy7040 496 IYTLAVKN 503 (716)
Q Consensus 496 ~y~~~a~n 503 (716)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998753
No 317
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=94.25 E-value=0.21 Score=38.93 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=49.4
Q ss_pred EEEecCCeEEEEEEEec-cCCCeEEEEeCCeEe-------------ccCCcEEEEe--CCCeEEEEECCCCCCCceeEEE
Q psy7040 436 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITI-------------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTL 499 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~-~p~~~~~W~~~~~~~-------------~~~~~~~~~~--~~~~~~l~i~~l~~~~~~~y~~ 499 (716)
+.+..|+.+.+.|.... .....+.|++..... ....++.+.. ......|.|.++..+|.|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999998864 345678899765211 1123344432 2356789999999999999999
Q ss_pred EEEcCC
Q psy7040 500 AVKNSW 505 (716)
Q Consensus 500 ~a~n~~ 505 (716)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 887644
No 318
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=94.25 E-value=0.44 Score=38.69 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=49.0
Q ss_pred cccEEEecCCeEEEEEEEeccC------CCeEEEEeCCeEe--------c---------cCCcEEEE--eCCCeEEEEEC
Q psy7040 433 LSDIKVRAGSNFEFDINVIGEP------IPTKEWLCNDITI--------I---------SKDRFKIV--NDDKSTKLKVF 487 (716)
Q Consensus 433 ~~~~~~~~g~~~~~~~~v~~~p------~~~~~W~~~~~~~--------~---------~~~~~~~~--~~~~~~~l~i~ 487 (716)
+..+.+..|+.+.|.|...... ...+.|++....- . -..++.+. ......+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3457899999999999775322 3458899764210 0 01233332 23456789999
Q ss_pred CCCCCCceeEEEEEEcC
Q psy7040 488 DSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 488 ~l~~~~~~~y~~~a~n~ 504 (716)
+++..|++.|.|.....
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999988653
No 319
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=94.24 E-value=0.2 Score=38.47 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=32.0
Q ss_pred CccEEEEeccccCcceEEEEEE-EeCCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTA-ENINGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a-~n~~g~~~~~~~~~v 219 (716)
.+.+|.|.+++..|+|.|+|.. ....|..+++..|+|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 4789999999999999999975 567888888888876
No 320
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.22 E-value=0.12 Score=35.67 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=31.4
Q ss_pred eccCcee-eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcC
Q psy7040 638 SLMPISL-ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686 (716)
Q Consensus 638 ~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~ 686 (716)
+.|+..+ .+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+.
T Consensus 12 lTCP~~~~~i~W~~n~~~~~g~----~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 12 VTCPLSGDDIKWKKNDQVSQGS----DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EECCCCCCCceEEeCCccCCCC----CceEEeeccC-CCCceEEEEeCCC
Confidence 7787655 79999998655432 2345555666 8899999998653
No 321
>PHA02982 hypothetical protein; Provisional
Probab=93.80 E-value=0.85 Score=39.54 Aligned_cols=103 Identities=11% Similarity=0.179 Sum_probs=67.9
Q ss_pred EecCCeEEEEEEE-eccCCCeEEEEeCCeE-ec----------c--------CCcEEEEeCCCeEEEEECCCCCCCceeE
Q psy7040 438 VRAGSNFEFDINV-IGEPIPTKEWLCNDIT-II----------S--------KDRFKIVNDDKSTKLKVFDSKRGDSGIY 497 (716)
Q Consensus 438 ~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~-~~----------~--------~~~~~~~~~~~~~~l~i~~l~~~~~~~y 497 (716)
...++.+.|+|.. .+.......|..++.- +. . -..+.+..+++.++|++++..+...|-|
T Consensus 36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF 115 (251)
T ss_pred ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence 3446677788864 2223334667654321 11 1 2346677788999999999999999999
Q ss_pred EEEEEcCCCceee-EEEEEE--EEEEEEEeCCCCCCCCceeeEEEEEE
Q psy7040 498 TLAVKNSWGTDKG-TAKVTV--LGCSLKWNPPEDDGGAPIEYYMVEKM 542 (716)
Q Consensus 498 ~~~a~n~~g~~~~-s~~~~v--~~v~l~W~~p~~~~~~~i~~y~v~~~ 542 (716)
+|.|....+.... ..-+.+ ..+.+.|.. .++...+..|...+.
T Consensus 116 tc~~ks~~~k~E~c~kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~~ 161 (251)
T PHA02982 116 TCEAKDAEGKEETCEKCLEIQKEDILYVVEE--HNNETIITCFVGSKH 161 (251)
T ss_pred EEEEecCCCchheeheeeeEecceEEEEEEe--cCCeEEEEEEEEecc
Confidence 9999987765543 444444 489999985 445555666655444
No 322
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=93.76 E-value=0.18 Score=38.75 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.3
Q ss_pred ccEEEEeccccCcceEEEEEEEeCCCC
Q psy7040 184 NTKLGVRMAQRADAGFYTVTAENINGK 210 (716)
Q Consensus 184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~ 210 (716)
+.+|+|.++++.|+|.|+|...+..|.
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~ 82 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNGV 82 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCCc
Confidence 379999999999999999999987755
No 323
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=93.75 E-value=0.2 Score=38.72 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=36.7
Q ss_pred eccCcee-------eEEEEeCCeEeeecc--------cceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-------ESQYLMNDKRVTIDN--------VDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-------~~~W~~~~~~~~~~~--------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
+.|.+.| .+.|+++++++.... ......+.+.--..++.-.|+|+|.+..+..
T Consensus 21 L~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 21 LQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred EEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 6677776 479999999886641 2223566665444555559999999987653
No 324
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=93.75 E-value=0.26 Score=39.58 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.8
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l 696 (716)
.++.|.+|+.+|.|+|+|.+.|..+-......+
T Consensus 80 aSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~ 112 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQV 112 (116)
T ss_pred eEEEEccCCcccCEEEEEEEEcCCCcCCceeEE
Confidence 789999999999999999999987644333333
No 325
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=93.72 E-value=0.13 Score=40.71 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=33.0
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~ 700 (716)
..+|.|.+|+.+|+|.|+|.........+....|.|..
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 37999999999999999999999777778888888763
No 326
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=93.65 E-value=0.16 Score=39.37 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.8
Q ss_pred cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeeccc----------cee--eEEEEccCCCCCcEEEEEEEEcC
Q psy7040 619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNV----------DYF--TKITIRPLQRSDTAQYTVTATNS 686 (716)
Q Consensus 619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~~~----------~~~--~~~~i~~l~~~~~y~y~~~a~n~ 686 (716)
+..+.|.+.+.||.-. ...++|+++|..+..... ... ..|.|.....++.+.|+|.|.+.
T Consensus 13 ~~~~~L~C~a~g~~P~--------~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~ 84 (95)
T cd00098 13 GGSVTLTCLATGFYPP--------DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHE 84 (95)
T ss_pred CCCeEEEEEEeeEECC--------CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeC
Confidence 4566666666655310 006899999988765421 111 34556555556999999999997
Q ss_pred CCC
Q psy7040 687 QGK 689 (716)
Q Consensus 687 ~G~ 689 (716)
...
T Consensus 85 ~~~ 87 (95)
T cd00098 85 SLP 87 (95)
T ss_pred CCC
Confidence 654
No 327
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=93.58 E-value=0.22 Score=38.62 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=30.2
Q ss_pred cCCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEE
Q psy7040 181 LDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV 219 (716)
Q Consensus 181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v 219 (716)
...+.+|+|.+++..|+|.|.|...+..|.. .....|.|
T Consensus 57 ~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 57 SQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred cCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3446899999999999999999999887653 44444443
No 328
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=93.51 E-value=0.14 Score=40.22 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=27.6
Q ss_pred ccEEEEeccccCcceEEEEEEEeCCCC-ceeEEEE
Q psy7040 184 NTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEV 217 (716)
Q Consensus 184 ~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~~ 217 (716)
+++|.|.+++..|+|.|+|.+.|.... ....+.+
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence 679999999999999999999998744 4444444
No 329
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=93.37 E-value=0.3 Score=37.43 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=27.1
Q ss_pred CceEEEEe-cCCccEEEEeccccCcceEEEEEEEe
Q psy7040 173 GMVRKVQH-LDYNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 173 ~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
+.|+.+.. .+...+|+|.+++..|+|.|.|.+..
T Consensus 49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 45666554 45567899999999999999999974
No 330
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=93.27 E-value=0.22 Score=37.22 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=34.7
Q ss_pred eccCcee-----eEEEEeCCeEeeecc------cc-----eeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTIDN------VD-----YFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~~------~~-----~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
+.|.+.| .++|+++|+++.... .. ....+.+.--..++.-.|+|+|.|..-..
T Consensus 4 LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 4 LTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 5565555 889999999875531 11 11355555444566779999999976554
No 331
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=93.15 E-value=1 Score=48.04 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=36.6
Q ss_pred EEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccC
Q psy7040 89 YLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGES 136 (716)
Q Consensus 89 y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~ 136 (716)
+.+.|.......|.....+....+.+.++.+| +|.++|+|.|..|..
T Consensus 639 ~~~a~~a~~~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~ 685 (952)
T COG4733 639 AAWAYEAGWDGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPN 685 (952)
T ss_pred HHHHhhcccCCceEecccccccceeecCcCcc-ceEEEEEEeeccCCC
Confidence 34445444444788888888899999999995 899999999988843
No 332
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=93.06 E-value=0.32 Score=34.51 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=32.9
Q ss_pred eEEEEeCCeEeeec----------ccceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040 645 ESQYLMNDKRVTID----------NVDYFTKITIRPLQRSDTAQYTVTATNSQ 687 (716)
Q Consensus 645 ~~~W~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~ 687 (716)
.+.|++++...... .......+.|.++...|.|.|+|.+.+..
T Consensus 14 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 14 TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 77888876554322 23444789999999999999999999876
No 333
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=92.34 E-value=0.39 Score=38.69 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.4
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGK 689 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~ 689 (716)
..+|.|.+|+..|+|+|.|.+.|..+.
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 368999999999999999999997764
No 334
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=92.30 E-value=2.3 Score=33.82 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=25.1
Q ss_pred EEecCCeEEEEEEEecc-CC-CeEEEEeCCeEecc
Q psy7040 437 KVRAGSNFEFDINVIGE-PI-PTKEWLCNDITIIS 469 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~-p~-~~~~W~~~~~~~~~ 469 (716)
....|..+.|.|.+.+. |. ..+.|++++..+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 34467778999999764 43 58999999998753
No 335
>KOG4806|consensus
Probab=92.23 E-value=10 Score=36.12 Aligned_cols=33 Identities=27% Similarity=0.188 Sum_probs=25.9
Q ss_pred eEEEEcCCCCCCeEEEEEEEEcCCCCCccceee
Q psy7040 570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 602 (716)
Q Consensus 570 ~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~ 602 (716)
.+-+|.||.||..|...|.|.-..|..-+-..+
T Consensus 410 ~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~ 442 (454)
T KOG4806|consen 410 ETETILGLMPGSSYLLDVTANLSMGKPLPYQAL 442 (454)
T ss_pred hhhhhcccccCceEEEEEEEcccCCccccceeE
Confidence 556789999999999999998877765544433
No 336
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.08 E-value=0.93 Score=36.65 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=47.6
Q ss_pred ccEEEecCCeEEEEEEEeccC--CCeEEEEeCCe--E---e---c-----------cCCcEEEEeCC--CeEEEEECCCC
Q psy7040 434 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCNDI--T---I---I-----------SKDRFKIVNDD--KSTKLKVFDSK 490 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~~p--~~~~~W~~~~~--~---~---~-----------~~~~~~~~~~~--~~~~l~i~~l~ 490 (716)
..+.+..|+.++|.|...... ...+.|++... . + . ...++...... ....|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 356789999999999876543 45688986432 1 0 0 01234443332 34579999999
Q ss_pred CCCceeEEEEEEc
Q psy7040 491 RGDSGIYTLAVKN 503 (716)
Q Consensus 491 ~~~~~~y~~~a~n 503 (716)
++|++.|-|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998764
No 337
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=91.96 E-value=1.4 Score=33.40 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEE-eCCC----eEEEEECCCCCCCceeEEEEEEcCCCc
Q psy7040 441 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT 507 (716)
Q Consensus 441 g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~~~y~~~a~n~~g~ 507 (716)
+..+.+.|.. .|.|.+.+.|+.++..+......... ..+. ...|.+..-..++.-.++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 5788999966 78899999999999877211111111 1111 234555544445677889999876543
No 338
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=91.79 E-value=1.4 Score=33.79 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCeEEEEEEEecc-CCC-eEEEEeCCeEeccCCc-EEEEeC--CCeEEEEECCCCCCCceeEEEEEEcCC
Q psy7040 441 GSNFEFDINVIGE-PIP-TKEWLCNDITIISKDR-FKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSW 505 (716)
Q Consensus 441 g~~~~~~~~v~~~-p~~-~~~W~~~~~~~~~~~~-~~~~~~--~~~~~l~i~~l~~~~~~~y~~~a~n~~ 505 (716)
++.+.|.|.+.+. |.. .+.|.+++........ ...... +.-.......+.+.+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 5678999999885 443 8899999863321111 111111 111111122233346678888886654
No 339
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=91.77 E-value=0.51 Score=36.61 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=30.0
Q ss_pred CccEEEEeccccCcceEEEEEEE-eCCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAE-NINGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~-n~~g~~~~~~~~~v 219 (716)
...+|+|.+++.+|+|.|.|... ...|..+..+.|+|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 46889999999999999999765 46666666666665
No 340
>KOG4228|consensus
Probab=91.57 E-value=1 Score=49.76 Aligned_cols=216 Identities=12% Similarity=0.032 Sum_probs=119.1
Q ss_pred ccCCCCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEe
Q psy7040 52 DRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131 (716)
Q Consensus 52 ~~~~~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~ 131 (716)
...++++....++.....+..+.|..... ....|.+.++...++ +........+.+....+.+-+.+.+ .++|
T Consensus 22 ~~~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~~~~~~~s~~~~~~~~~~~~--~evn 94 (1087)
T KOG4228|consen 22 NGGPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDVDLTTRLSYPCLSPPSFLEL--VEVN 94 (1087)
T ss_pred cCCCCCCCCcccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeeccceeecccCCCCCcchhhh--hhcc
Confidence 33444455567888888899999997642 467777777665555 4333333335567777777777777 7788
Q ss_pred cCccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEE-----EEEe
Q psy7040 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTV-----TAEN 206 (716)
Q Consensus 132 ~~g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c-----~a~n 206 (716)
..|.+..+......+....... .......+.+..........+-| .+.+
T Consensus 95 t~~~a~~~~~~~~rt~~~~~~~--------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (1087)
T KOG4228|consen 95 TIGRAPFQCPVAPRTGEQATLS--------------------------LQRDVQALMLSAATAHVNWRRFSATVGPLAIA 148 (1087)
T ss_pred cccccccccccCCccccccccc--------------------------cccchhhhhhhhhhhccCcccccccccccccC
Confidence 8887777766555443211100 00111112222222222222222 2333
Q ss_pred CCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEc
Q psy7040 207 INGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVE 286 (716)
Q Consensus 207 ~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (716)
..|....+..+.+..-+..|..+. ...+...++++|..+... .+..|.+...+.+......+.. .........
T Consensus 149 ~~~~~~~~t~i~i~~~~~~p~~~~--~~~~~~~it~~w~~~~~~---~~~~ykl~~~~~d~~~~~~v~~--~~~~~~~t~ 221 (1087)
T KOG4228|consen 149 SPGLGPPSTYIQITTNANSPIQPG--EEEEYTTITGSWSPPHAV---SLDTYKLLHLDPDTGYEISVTL--TPPGSGGTG 221 (1087)
T ss_pred CcccCCCCceEEEeccCCCCCCCC--cceEEEEEEecCCCCCcc---cchhhhhhhcCCcccceeeeec--cCCCCCccc
Confidence 333322355555555554444433 555677899999975432 4677777665553333222222 234455556
Q ss_pred CCCCCCeEEEEEEEEcCCCCC
Q psy7040 287 GLIPNHKYKFRVRAVNKQGKS 307 (716)
Q Consensus 287 ~L~p~~~y~~~v~a~n~~g~~ 307 (716)
++.+-..+.++|.+....+..
T Consensus 222 ~~~~~~~~~~~~ae~~~~~~~ 242 (1087)
T KOG4228|consen 222 DLGPPSISRFKCAEPDRGPLG 242 (1087)
T ss_pred CCCCcccccccccCccccccC
Confidence 777777888888886655443
No 341
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=91.35 E-value=2.3 Score=32.70 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.0
Q ss_pred cCCeEEEEEEEecc-CCC-eEEEEeCCeEecc
Q psy7040 440 AGSNFEFDINVIGE-PIP-TKEWLCNDITIIS 469 (716)
Q Consensus 440 ~g~~~~~~~~v~~~-p~~-~~~W~~~~~~~~~ 469 (716)
.+....|.|.+.+. |.. .+.|.+++..+..
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~ 44 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETE 44 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence 56778999999875 433 6899999988654
No 342
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=91.30 E-value=2.4 Score=32.64 Aligned_cols=35 Identities=9% Similarity=0.035 Sum_probs=26.9
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
..++.|.+|..+|.|.|+|...+ ...+.....+.|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t-~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVT-YPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEe-CCCCCeEEEEEE
Confidence 37899999999999999999887 444444444444
No 343
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=90.56 E-value=2 Score=33.55 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=57.3
Q ss_pred CCCCCCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeec-CCCCe-----EEec--CCCCCCeE
Q psy7040 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE-GDTPK-----GKVL--DLIEGNQY 395 (716)
Q Consensus 324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~l~~~~~Y 395 (716)
+|..|.++.+...+...++.-|++....+ .-..|.+.|.... ..|..+.... ....+ ..+. +..-...|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~--l~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGN--LPTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSST--STCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCC--CCCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence 57788899999888899999999854332 2244999998876 6677665432 12233 4444 77889999
Q ss_pred EEEEEEEeCCCC
Q psy7040 396 EFRVLAVNKGGP 407 (716)
Q Consensus 396 ~~~v~a~n~~g~ 407 (716)
.++|.|.|..|.
T Consensus 84 ~i~V~a~~~~~~ 95 (104)
T PF09067_consen 84 CIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEeccCCCc
Confidence 999999998763
No 344
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=90.43 E-value=1 Score=32.77 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=25.8
Q ss_pred eEEEEeCCeEeeec----------cccee--eEEEEccCCCCCcEEEEEEEEcCC
Q psy7040 645 ESQYLMNDKRVTID----------NVDYF--TKITIRPLQRSDTAQYTVTATNSQ 687 (716)
Q Consensus 645 ~~~W~~~~~~~~~~----------~~~~~--~~~~i~~l~~~~~y~y~~~a~n~~ 687 (716)
.+.|+++|+++..+ ...+. ..|.|.....++.-.|+|.+....
T Consensus 17 ~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 17 TVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred EEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 78999999864332 00111 344554445567778888887643
No 345
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=89.96 E-value=0.82 Score=35.17 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.0
Q ss_pred ccEEEEeccccCcceEEEEEEEe-CCCCceeEEEE
Q psy7040 184 NTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEV 217 (716)
Q Consensus 184 ~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~~ 217 (716)
+.+|.|.+++.+|+|.|+|...+ ..|..++.+.+
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 68999999999999999997765 46665555544
No 346
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=89.92 E-value=0.46 Score=37.54 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=24.1
Q ss_pred CccEEEEeccccCcceEEEEEEEeCCC
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENING 209 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g 209 (716)
...+|+|.+++..|+|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 467899999999999999999987665
No 347
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=89.88 E-value=1.1 Score=36.24 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.0
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGK 689 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~ 689 (716)
..+|+|.+++..|+|.|.|.+.|..+.
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence 368999999999999999999997654
No 348
>smart00406 IGv Immunoglobulin V-Type.
Probab=89.35 E-value=2.1 Score=31.51 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred cEEEEeC--CCeEEEEECCCCCCCceeEEEE
Q psy7040 472 RFKIVND--DKSTKLKVFDSKRGDSGIYTLA 500 (716)
Q Consensus 472 ~~~~~~~--~~~~~l~i~~l~~~~~~~y~~~ 500 (716)
++.+... .....|.|.++++.|.|.|.|.
T Consensus 50 R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 50 RVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred cEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4444433 5667899999999999999995
No 349
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=89.00 E-value=0.78 Score=36.77 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.5
Q ss_pred CCccEEEEeccccCcceEEEEEEEeC
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENI 207 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~ 207 (716)
....+|.|.+++..|+|.|.|.+...
T Consensus 76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 76 QNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 45789999999999999999999876
No 350
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=88.95 E-value=2 Score=33.49 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccC-cccce-----EEE--cCCCCCCe
Q psy7040 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE-GPVTG-----LEV--EGLIPNHK 293 (716)
Q Consensus 222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~-~~~~~-----~~i--~~L~p~~~ 293 (716)
+|..|.. +.........++--|++.. .++. -..|.+.|.... ..|..+.... ....+ +.+ .+..-...
T Consensus 7 ~p~~P~~-~~C~S~~~etftC~W~~g~-~~~l-~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 7 PPEKPEN-LKCFSREMETFTCFWEPGS-EGNL-PTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HCCCCEE-EEEEBSSSS-EEEEEEEES-SSTS-TCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred CCCCCcc-CccCCCCCCcEEEEeeCCC-CCCC-CCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 4666666 6777777889999999643 3332 344999998776 7788887542 12233 444 47899999
Q ss_pred EEEEEEEEcCCCC
Q psy7040 294 YKFRVRAVNKQGK 306 (716)
Q Consensus 294 y~~~v~a~n~~g~ 306 (716)
|.++|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999997764
No 351
>KOG4228|consensus
Probab=88.26 E-value=6.5 Score=43.94 Aligned_cols=104 Identities=19% Similarity=0.083 Sum_probs=67.9
Q ss_pred EEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCc
Q psy7040 199 FYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278 (716)
Q Consensus 199 ~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~ 278 (716)
.|+|.+....|.....+.+.+..-|..+.. ..+......+..+.|..... ....|.+..+..... +..... .
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~-~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~--~ 72 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPST-PNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDV--D 72 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCC-cccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeec--c
Confidence 489999999998888888888877766665 57777778888888886332 456676666554433 222222 1
Q ss_pred ccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcc
Q psy7040 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTT 312 (716)
Q Consensus 279 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~ 312 (716)
....+....+.+.+.+.+ .+.|..|.+..+..
T Consensus 73 ~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~ 104 (1087)
T KOG4228|consen 73 LTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCP 104 (1087)
T ss_pred ceeecccCCCCCcchhhh--hhcccccccccccc
Confidence 234466666777777766 66676665544443
No 352
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=88.06 E-value=4.6 Score=31.02 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=39.2
Q ss_pred eEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEE--eCCC---eEEEEECCCCCCCceeEEEEEEcCCCceeeEE
Q psy7040 443 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIV--NDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512 (716)
Q Consensus 443 ~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~ 512 (716)
...+.|.. .++|.+.++|+++... ....... .++. ...|.+.....++.-.|+|++.+..-......
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 45678866 5899999999987211 1111111 1111 23555555555666788899988765444333
No 353
>PHA02633 hypothetical protein; Provisional
Probab=87.98 E-value=1.8 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=34.2
Q ss_pred CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCC
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p 223 (716)
....|-|-+....|+|.|.|...|..-....+..+.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 56679999999999999999999888777777777776544
No 354
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=87.93 E-value=7.8 Score=28.12 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=18.7
Q ss_pred EEEEEEEecc-CC-CeEEEEeCCeEe
Q psy7040 444 FEFDINVIGE-PI-PTKEWLCNDITI 467 (716)
Q Consensus 444 ~~~~~~v~~~-p~-~~~~W~~~~~~~ 467 (716)
+.|.|.+.+. |. ..+.|++++..+
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~ 27 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEV 27 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEEC
Confidence 4788999776 44 589999999864
No 355
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=87.69 E-value=0.81 Score=35.56 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=25.8
Q ss_pred eEEEEecCCccEEEEeccccCcceEEEEEEEeC
Q psy7040 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENI 207 (716)
Q Consensus 175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 207 (716)
++..........|+|.++++.|+|.|.|.+.+.
T Consensus 53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence 444444455678999999999999999988753
No 356
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=87.24 E-value=2.3 Score=36.79 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=36.1
Q ss_pred eEE-EEecCCccEEEEeccccCcceEEEEEEE-eCCC-CceeEEEEEEecCC
Q psy7040 175 VRK-VQHLDYNTKLGVRMAQRADAGFYTVTAE-NING-KDSVEVEVIVLDKP 223 (716)
Q Consensus 175 ~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~-n~~g-~~~~~~~~~v~~~p 223 (716)
|+. +...-....++|.+++..|+|.|+|... -..| ..+....|+|.+.-
T Consensus 74 Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 74 KIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred eEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence 444 2334457899999999999999999654 3456 67788888887543
No 357
>KOG4806|consensus
Probab=87.01 E-value=29 Score=33.21 Aligned_cols=123 Identities=14% Similarity=0.092 Sum_probs=70.1
Q ss_pred EcCCCCCCeEEEEEEEEcCCCCCccceeee---------ccCCCCCCccceeec--cceeEEEEE-----EeeEEEEeee
Q psy7040 574 IRPLQRSDTAQYTVTATNSQGKDQVFIEVV---------VTDKPSAPEGPIQWL--LTLTDVTWE-----ISNYLQELHS 637 (716)
Q Consensus 574 i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~---------v~~~p~~~~~~~~~~--~~~v~l~w~-----i~~y~v~~~~ 637 (716)
-..+.++..|.++++..|..- +.....+- .|..|..-. +..+. =+++++.|. -..|=|..+.
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde-~~~~v~V~aSt~~t~~~~P~LP~dTt-Vk~v~r~CSsAtIaW~gs~d~~~kyCIy~~~ 365 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDE-ALQKVMVAASTEATFRDLPELPQDTT-VKNVRRRCSSATIAWNGSPDEELKYCIYVFN 365 (454)
T ss_pred EEEecCCCceEEEEEecCCch-hhheeEeeeecccccCcCCCCCCCce-EeeeccccchheeeeccCcchheeEEEEEec
Confidence 345678889999999888542 21111111 244454444 45554 458899998 2234333332
Q ss_pred e----------ccCcee----------eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 S----------LMPISL----------ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~----------~~~~~~----------~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
+ .-.|.| -..|++.-+ -. .......+-+|.+|.|+.+|..-+.|.-..|....-..+.
T Consensus 366 ~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~-~q-~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~~ 443 (454)
T KOG4806|consen 366 LPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRE-RQ-QSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQALT 443 (454)
T ss_pred ccchhhhhhhhhccccCccccceeEEEeEEEecChh-hh-cchhhhhhhhhcccccCceEEEEEEEcccCCccccceeEE
Confidence 1 111111 223555421 11 1122335668999999999999999988888776666666
Q ss_pred Eec
Q psy7040 698 VTD 700 (716)
Q Consensus 698 v~~ 700 (716)
|.+
T Consensus 444 v~t 446 (454)
T KOG4806|consen 444 VHT 446 (454)
T ss_pred EEe
Confidence 554
No 358
>PHA03376 BARF1; Provisional
Probab=86.93 E-value=4.8 Score=34.75 Aligned_cols=44 Identities=11% Similarity=-0.014 Sum_probs=32.2
Q ss_pred ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEE
Q psy7040 174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEV 217 (716)
Q Consensus 174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~ 217 (716)
+++.+....++.+|.|.+++..|.|.|+|...-........-.+
T Consensus 76 GrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL 119 (221)
T PHA03376 76 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 119 (221)
T ss_pred cEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee
Confidence 45556556688999999999999999999888655443333333
No 359
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=86.79 E-value=7.4 Score=29.93 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=37.2
Q ss_pred eEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCC-----eEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 443 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 443 ~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
.....|.. .++|.+.+.|+++.. ...........+ ...|.+.-...++.-.|+|.+.+..-..
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 34667877 799999999999721 111111111111 2355555555556678889888766443
No 360
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=86.74 E-value=1.5 Score=30.39 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=34.1
Q ss_pred cCCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 440 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
.|..+.++|.... ..+.|.+++...... ...+.+.+.. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~---~~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSG---DDIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCC---CCceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCCC
Confidence 5778889996442 238999998654332 2244455555 7899999999543
No 361
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=86.74 E-value=4.3 Score=31.28 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=27.7
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVT 699 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~-~~s~~l~v~ 699 (716)
..|.|+.+++.|+|.|-...+|..|.. ...+.|.|.
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 789999999999999999999999987 333445543
No 362
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=86.51 E-value=0.93 Score=35.87 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=25.1
Q ss_pred eEEEEecCCccEEEEeccccCcceEEEEEEEeC
Q psy7040 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENI 207 (716)
Q Consensus 175 ~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~ 207 (716)
++.+........|+|.++++.|+|.|.|.+.+.
T Consensus 61 r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 61 RFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence 344433345678999999999999999998754
No 363
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=86.35 E-value=3.7 Score=31.66 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCccEEEEeccccCcceEEEEEEEeCCCCc-eeEEEEEE
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV 219 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~~~v 219 (716)
..+..|.|+.+++.|+|.|.+...|..|.. ...+++.|
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 357899999999999999999999999984 44455554
No 364
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=86.31 E-value=1 Score=46.89 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred CeEEe--cCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccc--cEEEecCCeEEEEEEEeccC---
Q psy7040 382 PKGKV--LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLS--DIKVRAGSNFEFDINVIGEP--- 454 (716)
Q Consensus 382 ~~~~i--~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~--~~~~~~g~~~~~~~~v~~~p--- 454 (716)
..+.| ..|.++..|.|++......+..........+.. ..+|.+...... ...+..++.+.|...+...+
T Consensus 148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~---~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~ 224 (440)
T PF02010_consen 148 SSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVS---GDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDS 224 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEecc---CCCCceeEccccccccccCCCCCEEEEEEEeCCCCcC
Confidence 34444 668999999999999877653322222222211 123433322111 12366676777766665322
Q ss_pred -CCeEEEEe--------CCeEeccCCcEEEEeCCCeEEEEEC--CCCCCCceeEEEEEEcCCCce
Q psy7040 455 -IPTKEWLC--------NDITIISKDRFKIVNDDKSTKLKVF--DSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 455 -~~~~~W~~--------~~~~~~~~~~~~~~~~~~~~~l~i~--~l~~~~~~~y~~~a~n~~g~~ 508 (716)
...+.|.. ....+.... ...........|.|. .|.++..|.+++.+.+..+..
T Consensus 225 ~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~ 288 (440)
T PF02010_consen 225 SNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSS 288 (440)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEEEEEEeeccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 23567876 011110000 011111223455554 578888999999999887654
No 365
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=86.30 E-value=2 Score=32.83 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=26.1
Q ss_pred eccCcee------eEEEEeCCeEeeecc---------cceeeEEEEccCCCCCcEEEEEEEEc
Q psy7040 638 SLMPISL------ESQYLMNDKRVTIDN---------VDYFTKITIRPLQRSDTAQYTVTATN 685 (716)
Q Consensus 638 ~~~~~~~------~~~W~~~~~~~~~~~---------~~~~~~~~i~~l~~~~~y~y~~~a~n 685 (716)
|.|.+.| .+.|.+||+.+. +. ..+-....-..+.+++.-.|+|.+.-
T Consensus 20 L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H 81 (93)
T cd05770 20 LNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRH 81 (93)
T ss_pred EEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence 4555555 789999999876 41 11111222223345555667777655
No 366
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=86.23 E-value=1.2 Score=35.44 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.9
Q ss_pred CccEEEEeccccCcceEEEEEEEeCC
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENIN 208 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~ 208 (716)
....|.|.+++++|+|.|.|.+.+..
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCCC
Confidence 46789999999999999999998654
No 367
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=85.82 E-value=1.9 Score=33.08 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=11.3
Q ss_pred eEEEEeCCeEeeec
Q psy7040 645 ESQYLMNDKRVTID 658 (716)
Q Consensus 645 ~~~W~~~~~~~~~~ 658 (716)
.+.|.++|.++..+
T Consensus 33 ~v~W~~~g~~~~~~ 46 (94)
T cd05767 33 NVTWLKNGVPVTDG 46 (94)
T ss_pred EEEEEECCeEccCc
Confidence 78999999987553
No 368
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=85.80 E-value=2.4 Score=32.48 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=31.6
Q ss_pred ceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec---------ccceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID---------NVDYFTKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 620 ~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~---------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
..+.|.+.+.||.=.- + .++|.++|+.+... ..+.-.......+.+.+...|+|.+.+..-
T Consensus 15 ~~~~L~C~a~gF~P~~--i------~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 15 GSLTLSCHATGFYPRD--I------EVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CcEEEEEEEEEEeCCC--c------EEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 4566555555542210 0 78999999643222 011112222333444577788888877543
No 369
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=85.40 E-value=1.9 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.3
Q ss_pred cCCeEEEEEEEecc-C-CCeEEEEeCCeEec
Q psy7040 440 AGSNFEFDINVIGE-P-IPTKEWLCNDITII 468 (716)
Q Consensus 440 ~g~~~~~~~~v~~~-p-~~~~~W~~~~~~~~ 468 (716)
.+..+.|.|.+.+. | ...+.|++++..+.
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~ 46 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVS 46 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence 45667999999774 4 35789999998874
No 370
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=85.00 E-value=5.6 Score=27.91 Aligned_cols=39 Identities=28% Similarity=0.633 Sum_probs=27.7
Q ss_pred CCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCC
Q psy7040 98 TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138 (716)
Q Consensus 98 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~ 138 (716)
.+.|........ .+.+.+|.|| .|.++|+|.+..|....
T Consensus 18 d~~W~~~~~~~~-~~~~~~L~~G-~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 18 DDEWITLGSYSN-SISYTNLPPG-KYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp ESSEEEESSTS--EEEEES--SE-EEEEEEEEEETTS-B-S
T ss_pred CCeEEECCCCcE-EEEEEeCCCE-EEEEEEEEECCCCCcCc
Confidence 467887765432 8999999999 89999999998875443
No 371
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=84.85 E-value=2.5 Score=32.43 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.5
Q ss_pred eEEEEeCCeEeeec
Q psy7040 645 ESQYLMNDKRVTID 658 (716)
Q Consensus 645 ~~~W~~~~~~~~~~ 658 (716)
.+.|+++|+++...
T Consensus 32 ~v~W~~~g~~~~~~ 45 (94)
T cd05766 32 TVKWFKNGQEETEG 45 (94)
T ss_pred EEEEEECCeecCCC
Confidence 78999999987653
No 372
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=84.61 E-value=1.6 Score=35.44 Aligned_cols=27 Identities=30% Similarity=0.149 Sum_probs=22.8
Q ss_pred cCCccEEEEeccccCcceEEEEEEEeC
Q psy7040 181 LDYNTKLGVRMAQRADAGFYTVTAENI 207 (716)
Q Consensus 181 ~~~~~~l~i~~l~~~~~g~y~c~a~n~ 207 (716)
...+.+|+|.+++..|+|.|.|.....
T Consensus 76 ~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 76 GKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 345678999999999999999988653
No 373
>smart00406 IGv Immunoglobulin V-Type.
Probab=84.17 E-value=1.1 Score=33.02 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred CCccEEEEeccccCcceEEEEE
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVT 203 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~ 203 (716)
.....|.|.+++..|+|.|.|.
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEc
Confidence 4567899999999999999995
No 374
>PHA02633 hypothetical protein; Provisional
Probab=83.83 E-value=3.3 Score=28.20 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=33.5
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p 702 (716)
...|.|......|+|.|.|...|..=...-+..|.|....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 3678899999999999999999976666778888887654
No 375
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=82.80 E-value=1.8 Score=34.90 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=25.7
Q ss_pred ceEEEEecC--CccEEEEeccccCcceEEEEEEEe
Q psy7040 174 MVRKVQHLD--YNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 174 ~~~~~~~~~--~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
.|+.+.... ....|+|.++++.|+|.|.|.+..
T Consensus 64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 345555444 567899999999999999998864
No 376
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=82.14 E-value=7.1 Score=29.49 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=34.0
Q ss_pred eccCcee-----eEEEEeCCeEeeec---------cc--ceeeEEEEccCCCCCcEEEEEEEEcCCCC
Q psy7040 638 SLMPISL-----ESQYLMNDKRVTID---------NV--DYFTKITIRPLQRSDTAQYTVTATNSQGK 689 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~~~---------~~--~~~~~~~i~~l~~~~~y~y~~~a~n~~G~ 689 (716)
+.|.+.+ .+.|+.++..+... .. .....|.+.--..++.-.|+|.|.|..-.
T Consensus 19 ~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 19 LTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp EEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred EEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6676665 99999998877111 11 11245666544455778999999997543
No 377
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=81.85 E-value=14 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.3
Q ss_pred cCCeEEEEEEEeccCCC--eEEEEeCCeEeccC
Q psy7040 440 AGSNFEFDINVIGEPIP--TKEWLCNDITIISK 470 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~~~ 470 (716)
.+..+.|.|.+.+.-+. .+.|.+++..+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~ 39 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEG 39 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeee
Confidence 36788999999765433 68999999887543
No 378
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=81.41 E-value=2.7 Score=31.33 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=24.4
Q ss_pred eEEEEeCCeEeeec------c---ccee---eEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 645 ESQYLMNDKRVTID------N---VDYF---TKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 645 ~~~W~~~~~~~~~~------~---~~~~---~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
.+.|+++|..+... . .+.- ..+.+. .+....|+|.+.....
T Consensus 26 ~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 26 TVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp EEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred EEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 78999999876543 0 1111 344444 4555578888776543
No 379
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=80.69 E-value=2.3 Score=33.47 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=26.0
Q ss_pred ceEEEEecCCccEEEEeccccCcceEEEEEEEe
Q psy7040 174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
.++.+........|+|.+++..|+|.|.|.+.+
T Consensus 58 ~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 58 KRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred ceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 455554545667899999999999999998753
No 380
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=80.57 E-value=10 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=25.5
Q ss_pred eEEEEeCCeEeeec-------ccc--ee--eEEEEccCCCCCcE-EEEEEEEcCCCCc
Q psy7040 645 ESQYLMNDKRVTID-------NVD--YF--TKITIRPLQRSDTA-QYTVTATNSQGKD 690 (716)
Q Consensus 645 ~~~W~~~~~~~~~~-------~~~--~~--~~~~i~~l~~~~~y-~y~~~a~n~~G~~ 690 (716)
.++|++||+++... ..+ +. ..+.+. +...+.+ .|+|.+.......
T Consensus 39 ~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 39 TVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred EEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence 78999999987543 111 11 223332 3344444 4888888865433
No 381
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=80.56 E-value=14 Score=29.31 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=26.5
Q ss_pred EEeCCeEeeecccceeeEEEEccCCCCCcEEEEEE
Q psy7040 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682 (716)
Q Consensus 648 W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~ 682 (716)
|.++.-....+...++..|+|.+|+.+|...|.|.
T Consensus 58 ~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca 92 (115)
T cd05721 58 TSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCK 92 (115)
T ss_pred ccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEE
Confidence 44444444444556668999999999999999998
No 382
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=79.71 E-value=26 Score=27.14 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=49.8
Q ss_pred CCCcEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecCCCceEEEeeec---CCCCeEEecCCCC----CCeEEEEEE
Q psy7040 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE---GDTPKGKVLDLIE----GNQYEFRVL 400 (716)
Q Consensus 328 p~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~----~~~Y~~~v~ 400 (716)
|.++.+.-.+...+..+|.+-... .+-..|.++++.........+.... +......+..... ...|.+.|.
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~--~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~ 79 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEA--PPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVN 79 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTC--STTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCC--CCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEE
Confidence 567888877889999999872221 1356899999887644434443331 2234455555544 347899999
Q ss_pred EEeCCCC
Q psy7040 401 AVNKGGP 407 (716)
Q Consensus 401 a~n~~g~ 407 (716)
+.+..|.
T Consensus 80 ~ss~~~~ 86 (99)
T PF09240_consen 80 GSSSAGS 86 (99)
T ss_dssp EEETTEE
T ss_pred eccCCCc
Confidence 8887664
No 383
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=79.58 E-value=20 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=22.4
Q ss_pred EEEecCCeEEE-EEEE-eccCCCeEEEEeCC
Q psy7040 436 IKVRAGSNFEF-DINV-IGEPIPTKEWLCND 464 (716)
Q Consensus 436 ~~~~~g~~~~~-~~~v-~~~p~~~~~W~~~~ 464 (716)
+.+.+|+.+.+ .|.. .++|.++++|+.+.
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 45667777777 6665 89999999999763
No 384
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=78.45 E-value=15 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=21.5
Q ss_pred CCeEEEEEEEeccCC--CeEEEEeCCeEecc
Q psy7040 441 GSNFEFDINVIGEPI--PTKEWLCNDITIIS 469 (716)
Q Consensus 441 g~~~~~~~~v~~~p~--~~~~W~~~~~~~~~ 469 (716)
+....|.|.+.+.=+ ..+.|.+++..+..
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 445689999987533 46899999987643
No 385
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=78.40 E-value=12 Score=28.81 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=37.6
Q ss_pred EecCCeEEEEEEEecc-CC--CeEEEEeCCeEeccCCcEEE----EeCCCeEEEEECCCCCCCceeEEEEEE
Q psy7040 438 VRAGSNFEFDINVIGE-PI--PTKEWLCNDITIISKDRFKI----VNDDKSTKLKVFDSKRGDSGIYTLAVK 502 (716)
Q Consensus 438 ~~~g~~~~~~~~v~~~-p~--~~~~W~~~~~~~~~~~~~~~----~~~~~~~~l~i~~l~~~~~~~y~~~a~ 502 (716)
+..|..+.+.|.+.+- |. ..+.|+++...+.......- ........+++.--..++.-.|+|+|.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEE
Confidence 5789999999999644 44 46889887765543221100 001122344444444444458999885
No 386
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=78.38 E-value=4.3 Score=31.45 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=22.9
Q ss_pred CCccEEEEeccccCcceEEEEEEEeCC
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENIN 208 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~ 208 (716)
.....|+|.+++.+|+|.|.|.+.+..
T Consensus 61 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 61 NGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred CCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 346789999999999999999887644
No 387
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=78.30 E-value=6 Score=30.44 Aligned_cols=29 Identities=7% Similarity=-0.156 Sum_probs=21.8
Q ss_pred cCCeEEEEEEEeccCC--CeEEEEeCCeEec
Q psy7040 440 AGSNFEFDINVIGEPI--PTKEWLCNDITII 468 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~ 468 (716)
.+..+.+.|.+.+.-+ ..+.|.+++..+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 3456799999987533 3579999998764
No 388
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=78.28 E-value=10 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=21.8
Q ss_pred cCCeEEEEEEEeccCC--CeEEEEeCCeEec
Q psy7040 440 AGSNFEFDINVIGEPI--PTKEWLCNDITII 468 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~--~~~~W~~~~~~~~ 468 (716)
.|....|.|.+.+.-+ ..+.|.+++..+.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 4555689999987533 4679999998864
No 389
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=78.17 E-value=18 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCeEEEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEc
Q psy7040 441 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN 503 (716)
Q Consensus 441 g~~~~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n 503 (716)
...+.+.|.+ ...+.|++ +..+.... ...+.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 3456788854 24589999 54432111 44788888888999999999977
No 390
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=77.92 E-value=3.3 Score=33.63 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=23.7
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
.+|.+...+.- .|+|+|.+...-.+++....|...
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence 45666664433 899999999988888877777663
No 391
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=77.60 E-value=5.5 Score=31.02 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=18.8
Q ss_pred ceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec
Q psy7040 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID 658 (716)
Q Consensus 620 ~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~ 658 (716)
..+.|.+.+.||.-. .+ .+.|+++|+++..+
T Consensus 18 ~~~~L~C~~~gfyP~--~i------~v~W~~~g~~~~~~ 48 (100)
T cd07699 18 GKATLVCLINDFYPG--FA------TVQWKVDGATVSSG 48 (100)
T ss_pred CCcEEEEEEEeEECC--CC------EEEEEECCEECccc
Confidence 345655555555321 01 78999999987533
No 392
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=76.89 E-value=5.4 Score=30.70 Aligned_cols=14 Identities=0% Similarity=0.119 Sum_probs=11.1
Q ss_pred eEEEEeCCeEeeec
Q psy7040 645 ESQYLMNDKRVTID 658 (716)
Q Consensus 645 ~~~W~~~~~~~~~~ 658 (716)
.++|.++|..+..+
T Consensus 34 ~v~W~kng~~~~~~ 47 (96)
T cd07697 34 QVHWREGNSPSILG 47 (96)
T ss_pred EEEEEECCEECcCC
Confidence 78999999886543
No 393
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=76.82 E-value=3.3 Score=33.36 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=25.5
Q ss_pred ceEEEEe--cCCccEEEEeccccCcceEEEEEEEe
Q psy7040 174 MVRKVQH--LDYNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 174 ~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
+|+.+.. .....+|+|.+++..|+|.|.|.+.+
T Consensus 59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 3455442 34567899999999999999998874
No 394
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=76.63 E-value=5.2 Score=31.27 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.5
Q ss_pred cCCeEEEEEEEeccCCC--eEEEEeCCeEec
Q psy7040 440 AGSNFEFDINVIGEPIP--TKEWLCNDITII 468 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p~~--~~~W~~~~~~~~ 468 (716)
.+..+.|.|.+.+.-+. .+.|.+++..+.
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 45678999999886544 579999998764
No 395
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=75.98 E-value=7.2 Score=29.91 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=32.2
Q ss_pred cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeeec----------cccee--eEEEEccCCCCCcEEEEEEEEcC
Q psy7040 619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID----------NVDYF--TKITIRPLQRSDTAQYTVTATNS 686 (716)
Q Consensus 619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~~----------~~~~~--~~~~i~~l~~~~~y~y~~~a~n~ 686 (716)
...+.|.+.+.||.=. .+ .+.|.++|+.+... ...++ ..|.+..-...+...|+|.+...
T Consensus 14 ~~~~~L~C~a~gFyP~--~I------~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~ 85 (94)
T cd05847 14 SETIQLLCLISGYTPG--TI------EVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ 85 (94)
T ss_pred CCCEEEEEEEEeEECC--CC------EEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence 3446666655555321 01 78999999886332 11111 22333322223456788888775
Q ss_pred CC
Q psy7040 687 QG 688 (716)
Q Consensus 687 ~G 688 (716)
..
T Consensus 86 ~~ 87 (94)
T cd05847 86 GT 87 (94)
T ss_pred Ce
Confidence 43
No 396
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=75.92 E-value=10 Score=28.34 Aligned_cols=54 Identities=6% Similarity=0.093 Sum_probs=36.1
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
.++|..-+.............|.+..|...|.|+.+|...-..-.......|.|
T Consensus 32 ~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 32 KVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred cEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 678887555433322334588999999999999999998654333344444444
No 397
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=75.70 E-value=45 Score=32.73 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=79.9
Q ss_pred ccEEEecCCeEEEEEEEec---cCCCeEEEEeCCeEec-----------------cCCcEEEEeC------CCeEEEEEC
Q psy7040 434 SDIKVRAGSNFEFDINVIG---EPIPTKEWLCNDITII-----------------SKDRFKIVND------DKSTKLKVF 487 (716)
Q Consensus 434 ~~~~~~~g~~~~~~~~v~~---~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~------~~~~~l~i~ 487 (716)
..+.+..|..+.+.|...- .......|...+-++. ..+.+.+..- -..++|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4577888999999998865 4455678886654432 1223333321 145689999
Q ss_pred CCCCCCceeEEEEEEcCCCceeeEEEEEEE-EEEEEEeCCCCCCCCceeeEEEEEE-ecCCCceeeeEEEccce
Q psy7040 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-GCSLKWNPPEDDGGAPIEYYMVEKM-ETDTGKVLIKWIRTNDK 559 (716)
Q Consensus 488 ~l~~~~~~~y~~~a~n~~g~~~~s~~~~v~-~v~l~W~~p~~~~~~~i~~y~v~~~-~~~~~~~~~~w~~~~~~ 559 (716)
.+.-...|-|.|+|....-......-+.+. .+.+.|..-. ++...+..|...+. ...+ +.|...+..
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~~e~-~n~T~V~Cyv~sy~~kp~s----i~wkvnGV~ 420 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWNTEG-DNETKVACYAAQYDMQPFS----ILWKSNGVS 420 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEEecc-CceEEEEEEEEecccCCce----eEEEEccEE
Confidence 999999999999998775555555555555 8999998542 34455677777763 3333 677766543
No 398
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=75.57 E-value=7.8 Score=29.77 Aligned_cols=60 Identities=5% Similarity=0.009 Sum_probs=35.8
Q ss_pred eccCcee-----eEEEEeCCeEee--ec---ccce---eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy7040 638 SLMPISL-----ESQYLMNDKRVT--ID---NVDY---FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 697 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~~~~~~--~~---~~~~---~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~ 697 (716)
+.|.+.+ .++|+++..... .. ..+. ...|.+.-...++.-.|+|+|.|..-.......+.
T Consensus 20 a~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 20 AKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred EEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 6676665 899998632111 11 1111 24566655566677799999999876554444443
No 399
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.37 E-value=12 Score=26.19 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=24.8
Q ss_pred CceEEEeeecCCCCeEEecCCCCCCeEEEEEEEEeCCCCC
Q psy7040 369 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 408 (716)
Q Consensus 369 ~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~ 408 (716)
..|..... ....+.+.+|.|| .|.|.|+|.+..|..
T Consensus 19 ~~W~~~~~---~~~~~~~~~L~~G-~Y~l~V~a~~~~~~~ 54 (66)
T PF07495_consen 19 DEWITLGS---YSNSISYTNLPPG-KYTLEVRAKDNNGKW 54 (66)
T ss_dssp SSEEEESS---TS-EEEEES--SE-EEEEEEEEEETTS-B
T ss_pred CeEEECCC---CcEEEEEEeCCCE-EEEEEEEEECCCCCc
Confidence 66776542 2228999999998 699999999987754
No 400
>KOG1225|consensus
Probab=73.55 E-value=12 Score=38.76 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=71.5
Q ss_pred CcccceEEEcCCCCCCeEEEEEEEEcCCCCCCCCcccceEEecCCCCCCCCCCCcEEEeeeCCeEEEEecCCCCCCCccc
Q psy7040 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI 356 (716)
Q Consensus 277 ~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~i~l~W~~p~~~~~~~i 356 (716)
.+....+.+..|+|++.|..++.+.-..-.+.+........ -..+..+.+......++.+.|..|... .
T Consensus 414 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~g~~~v~~~~~~s~e~~g~~~s~~----~ 482 (525)
T KOG1225|consen 414 PGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKSETTV-------LCWNGGLCVDGETESSLEVGGPCPSSG----T 482 (525)
T ss_pred ccceeeeeeeeecCCcceeeehhhhhhhhccCCcccccceE-------eecCCceeeeeeeeccccccCCCCCcc----c
Confidence 45678899999999999999999865332222222221121 224667888888999999999987543 3
Q ss_pred eEEEEEEeecCCCceEEEeeecCCCCeEEecCCCCCCeEEEEE
Q psy7040 357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399 (716)
Q Consensus 357 ~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~Y~~~v 399 (716)
..+.+.+.... ..-..........+.+...+|.+++.|.+.+
T Consensus 483 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 483 CGWEVRCGPCG-NDGGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred cceEEEeeecC-cccccccCCCCCCCCCCccCcccccceeccc
Confidence 45666663322 1111112223366778888999999988754
No 401
>PHA03042 CD47-like protein; Provisional
Probab=73.43 E-value=15 Score=33.87 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=37.4
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
.+.|..+++.+......+..++.. +-..+-.|+|+|.|.+..-+++-...|.-.
T Consensus 52 ~V~Wkf~~~~If~~n~tn~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 52 HINWKFNNKVIFKKNNTNTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred EEEEEeCCeeEEEecCCcceEEEE-eccccCCCceeEEEeecccCccEEEEEEEE
Confidence 578888888776653333355555 455566899999999987777666665544
No 402
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=71.58 E-value=17 Score=27.96 Aligned_cols=56 Identities=5% Similarity=0.005 Sum_probs=33.5
Q ss_pred eccCcee-----eEEEEeC--CeEeeec---cc---ceeeEEEEccCCCCCcEEEEEEEEcCCCCceee
Q psy7040 638 SLMPISL-----ESQYLMN--DKRVTID---NV---DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF 693 (716)
Q Consensus 638 ~~~~~~~-----~~~W~~~--~~~~~~~---~~---~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s 693 (716)
+.|.+.+ .|.|+++ +...... .. .....|.+.-...++.-.|+|+|.|..-.....
T Consensus 20 a~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 20 ATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred EEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 6677654 9999996 2211111 11 112456665556666779999999987554333
No 403
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=71.22 E-value=11 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=22.6
Q ss_pred cCCeEEEEEEEecc-CC-CeEEEEeCCeEecc
Q psy7040 440 AGSNFEFDINVIGE-PI-PTKEWLCNDITIIS 469 (716)
Q Consensus 440 ~g~~~~~~~~v~~~-p~-~~~~W~~~~~~~~~ 469 (716)
.+..+.|.|.+.+. |. ..+.|.+++..+..
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~ 48 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTD 48 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence 45667999999775 33 37899999988643
No 404
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=69.19 E-value=28 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=29.4
Q ss_pred EEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCceee-EEEEEec
Q psy7040 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTD 700 (716)
Q Consensus 647 ~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s-~~l~v~~ 700 (716)
..+.+|..+......-+.+- .-.+...-.|+|+|+..|..|.+.+. ..+.|.+
T Consensus 56 kly~dG~~V~tG~~~~~~~a-~~~~~~gG~y~~~VeLCN~~GCS~S~~~~V~VaD 109 (133)
T PF08329_consen 56 KLYFDGVLVWTGPSPQQKSA-TFTVTKGGRYQMQVELCNADGCSTSAPVEVVVAD 109 (133)
T ss_dssp EEEETTEEEEEEE--SEEEE-EEEE-S-EEEEEEEEEEETTEEEE---EEEEEE-
T ss_pred EEEECCEEEEeCCCccCceE-EEEecCCCEEEEEEEEECCCCcccCCCEEEEEeC
Confidence 34677777765522211222 44556777899999999999966433 3344443
No 405
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=69.11 E-value=6.4 Score=31.12 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCccEEEEeccccCcceEEEEEEEe
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
.....|+|.++++.|+|.|.|...+
T Consensus 69 ~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 69 SSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCEEEEEECCCCHHHCEEEEEeEcC
Confidence 3456799999999999999998753
No 406
>PLN02533 probable purple acid phosphatase
Probab=68.50 E-value=28 Score=35.85 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEc-----------cccCcccceEEEcCCCC
Q psy7040 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA-----------GETEGPVTGLEVEGLIP 290 (716)
Q Consensus 222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~L~p 290 (716)
.+..|.. +.+.-.+.+++.|+|..... ..+. |+|.......+... ....+......|.+|+|
T Consensus 40 ~~~~P~q-vhls~~~~~~m~V~W~T~~~--~~~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQ-VHISLVGPDKMRISWITQDS--IPPS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCce-EEEEEcCCCeEEEEEECCCC--CCCE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 3455665 67776678899999996432 1122 33322211100000 00122345688999999
Q ss_pred CCeEEEEEE
Q psy7040 291 NHKYKFRVR 299 (716)
Q Consensus 291 ~~~y~~~v~ 299 (716)
++.|.|+|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999994
No 407
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=68.49 E-value=7.8 Score=31.05 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=11.1
Q ss_pred eEEEEeCCeEeeec
Q psy7040 645 ESQYLMNDKRVTID 658 (716)
Q Consensus 645 ~~~W~~~~~~~~~~ 658 (716)
.+.|+++|+.+...
T Consensus 36 ~V~W~kng~~l~~g 49 (115)
T cd05769 36 SLSWKVNGKEVTDG 49 (115)
T ss_pred EEEEEECCEECCCC
Confidence 78999999876543
No 408
>PLN02533 probable purple acid phosphatase
Probab=67.94 E-value=46 Score=34.32 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=29.2
Q ss_pred eeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEEE
Q psy7040 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIW 712 (716)
Q Consensus 662 ~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~~ 712 (716)
......|.+|.+++.|.|+|-- ...+......++|. ..|..+.
T Consensus 101 ~iH~v~l~~L~p~T~Y~Yrvg~------~~~s~~~~F~T~p~--~~~~~f~ 143 (427)
T PLN02533 101 QINDVVIGPLKPNTVYYYKCGG------PSSTQEFSFRTPPS--KFPIKFA 143 (427)
T ss_pred eEEEEEeCCCCCCCEEEEEECC------CCCccceEEECCCC--CCCeEEE
Confidence 3467899999999999999942 12244456677664 2455544
No 409
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=65.50 E-value=60 Score=24.97 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=21.7
Q ss_pred EecCCeEEEEEEEecc--CC-CeEEEEeCCeE
Q psy7040 438 VRAGSNFEFDINVIGE--PI-PTKEWLCNDIT 466 (716)
Q Consensus 438 ~~~g~~~~~~~~v~~~--p~-~~~~W~~~~~~ 466 (716)
+..+..+.|.|.+.+. |. ..++|.+++..
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 4456778999999888 33 36899998753
No 410
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=64.72 E-value=45 Score=25.55 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCeEEEEEEEecc-CC-CeEEEEeCCeEe
Q psy7040 441 GSNFEFDINVIGE-PI-PTKEWLCNDITI 467 (716)
Q Consensus 441 g~~~~~~~~v~~~-p~-~~~~W~~~~~~~ 467 (716)
...+.|.|.+.+. |. ..+.|.+++..+
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~ 42 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVA 42 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEEC
Confidence 3457899999875 43 478999999875
No 411
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=64.32 E-value=47 Score=27.28 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=35.8
Q ss_pred EEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCccc
Q psy7040 65 NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141 (716)
Q Consensus 65 ~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s~~ 141 (716)
....-.+.|+|..= .|..-+.|+|+... ..-| .+......-..-....+-.|.|+|+..|..|.+.....
T Consensus 34 ~~~~v~V~VtwN~W---sG~~Gd~~kly~dG--~~V~--tG~~~~~~~a~~~~~~gG~y~~~VeLCN~~GCS~S~~~ 103 (133)
T PF08329_consen 34 RNDQVDVSVTWNVW---SGTNGDTAKLYFDG--VLVW--TGPSPQQKSATFTVTKGGRYQMQVELCNADGCSTSAPV 103 (133)
T ss_dssp E-SSEEEEEEEE-S---SS---SEEEEEETT--EEEE--EEE--SEEEEEEEE-S-EEEEEEEEEEETTEEEE---E
T ss_pred ecCceEEEEEEEEe---cCCCCCEEEEEECC--EEEE--eCCCccCceEEEEecCCCEEEEEEEEECCCCcccCCCE
Confidence 34455899999973 34446778876531 1111 11111112223334567799999999999997765533
No 412
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=63.44 E-value=50 Score=23.27 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=39.3
Q ss_pred eEEEEeCCeEeeec----ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy7040 645 ESQYLMNDKRVTID----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698 (716)
Q Consensus 645 ~~~W~~~~~~~~~~----~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v 698 (716)
...|+++++.+..- ..+.-..+.-+.+.+...|..+|.+..+.|.--.+..++|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 34788888876654 1122366777778888999999999999998766666655
No 413
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=61.53 E-value=12 Score=39.01 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=20.8
Q ss_pred ccEEEEecccc-CcceEEEEEEE-eCCCC--ceeEEEEEEecCCCCCCCCeEEe---E-EeCCeEEEEEECCCCCCC---
Q psy7040 184 NTKLGVRMAQR-ADAGFYTVTAE-NINGK--DSVEVEVIVLDKPSPPGGPLKVS---N-VHAEGVTLDWKVPDDDGG--- 252 (716)
Q Consensus 184 ~~~l~i~~l~~-~~~g~y~c~a~-n~~g~--~~~~~~~~v~~~p~~p~~~~~~~---~-~~~~~~~l~W~~p~~~~~--- 252 (716)
...|.|..... .-.|.|.+.+. ..... ....+.+.|...|..+. +... . .....+.|.=....+++.
T Consensus 37 ~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~--I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~ 114 (440)
T PF02010_consen 37 TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAV--IKGGSSRTVGYNSDITLDGSQSYDPDGPPG 114 (440)
T ss_dssp SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeE--EcCCccceeecCceEEEeeEEEeccccccc
Confidence 45777776543 44677777777 22222 44555566655443322 1111 0 111234433211111111
Q ss_pred CccceEEEEEEeCCCC-Ce----EEccccCcccceEEE--cCCCCCCeEEEEEEEEcCCC
Q psy7040 253 QPIEKYVVDKMDEATG-RW----TPAGETEGPVTGLEV--EGLIPNHKYKFRVRAVNKQG 305 (716)
Q Consensus 253 ~~~~~y~v~~~~~~~~-~~----~~~~~~~~~~~~~~i--~~L~p~~~y~~~v~a~n~~g 305 (716)
.....|.+........ .. ............+.| ..|.++..|.|++.+....+
T Consensus 115 ~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r 174 (440)
T PF02010_consen 115 DSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSR 174 (440)
T ss_dssp ------------------------------------------------------------
T ss_pred CCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCC
Confidence 1234555554433222 11 000111123345555 67999999999999988665
No 414
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=61.09 E-value=12 Score=30.22 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=23.8
Q ss_pred eEEEEecC--CccEEEEeccccCcceEEEEEEEe
Q psy7040 175 VRKVQHLD--YNTKLGVRMAQRADAGFYTVTAEN 206 (716)
Q Consensus 175 ~~~~~~~~--~~~~l~i~~l~~~~~g~y~c~a~n 206 (716)
|+.+.... ....|+|.+++++|+|.|.|.+..
T Consensus 64 rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 64 RFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred cEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 44444332 335799999999999999998764
No 415
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=60.97 E-value=3e+02 Score=31.38 Aligned_cols=82 Identities=20% Similarity=0.379 Sum_probs=46.5
Q ss_pred CCCCCCCCeEEeEEeCCeEEEEEECCCC--CCCCccceEEEEEEeCCCC---Ce---EEc------cccCcccceEEE--
Q psy7040 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDD--DGGQPIEKYVVDKMDEATG---RW---TPA------GETEGPVTGLEV-- 285 (716)
Q Consensus 222 ~p~~p~~~~~~~~~~~~~~~l~W~~p~~--~~~~~~~~y~v~~~~~~~~---~~---~~~------~~~~~~~~~~~i-- 285 (716)
||..... |++ ...+..+.|+|.+|.+ +.| ....|.|.+...-.. .+ ..+ ....+....+.+
T Consensus 755 PP~rItD-L~~-~~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~ 831 (863)
T TIGR00868 755 PPSKITD-LEA-GFQGDNIILTWTAPGDVLDHG-RADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKP 831 (863)
T ss_pred CCcccee-eEE-eecCCEEEEEeeCCCccCCCC-ccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeC
Confidence 4444444 555 3456779999999987 455 478898887543100 00 001 011122333333
Q ss_pred cCC--CCCCeEEEEEEEEcCCCC
Q psy7040 286 EGL--IPNHKYKFRVRAVNKQGK 306 (716)
Q Consensus 286 ~~L--~p~~~y~~~v~a~n~~g~ 306 (716)
.+. +.++.|.|-++|.+..|.
T Consensus 832 ~~~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 832 EGIPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred CcccccCCeEEEEEEEEEccccc
Confidence 342 257789999999987764
No 416
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=60.27 E-value=78 Score=24.47 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=47.8
Q ss_pred EEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccC-----CCeEEecCCCC----CcEEEEEEEEEecCc
Q psy7040 64 SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR-----EPEMDVTGLTP----GHEYKFRVKALNKEG 134 (716)
Q Consensus 64 ~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-----~~~~~i~~L~~----~~~y~~~v~a~~~~g 134 (716)
.-.+...+.-+|++... ..+-..|.++++........++..-. ...+.+..... ...|.+.|.+.+..|
T Consensus 8 ~~~~~~~m~CtW~~g~~--~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ss~~~ 85 (99)
T PF09240_consen 8 FIYNLEYMNCTWEPGKE--APPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGSSSAG 85 (99)
T ss_dssp EEETTTEEEEEEECCTT--CSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEEETTE
T ss_pred EEECCEEEEEEECCCCC--CCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEeccCCC
Confidence 34557899999997432 23467899999887755555554321 23466666655 247999999998887
Q ss_pred cCC
Q psy7040 135 ESE 137 (716)
Q Consensus 135 ~~~ 137 (716)
...
T Consensus 86 ~i~ 88 (99)
T PF09240_consen 86 SIR 88 (99)
T ss_dssp EEE
T ss_pred ccC
Confidence 543
No 417
>KOG4597|consensus
Probab=60.08 E-value=34 Score=34.39 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=59.0
Q ss_pred cEEEecCCeEEEEEEEeccCCCeEEEEeCCeE---e--ccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCcee
Q psy7040 435 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT---I--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509 (716)
Q Consensus 435 ~~~~~~g~~~~~~~~v~~~p~~~~~W~~~~~~---~--~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~ 509 (716)
.-.+..++..++.|-+.|.+.+.+.|.+.... + ..+..+.-........|.|-+....+.+-|+|.|.|.+|.-.
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 44567788899999999999999999864322 1 111111111223456899999999999999999999999776
Q ss_pred eEEEEEEE
Q psy7040 510 GTAKVTVL 517 (716)
Q Consensus 510 ~s~~~~v~ 517 (716)
..+...+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 66555544
No 418
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=57.56 E-value=19 Score=33.18 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCeEEEEeCC-eEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcC
Q psy7040 455 IPTKEWLCND-ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 504 (716)
Q Consensus 455 ~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~ 504 (716)
.|.+.|..++ ..+.....+.+...| .|.+.++....+|.|+|...-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 4568898754 445555566666554 5999999999999999988643
No 419
>PHA03042 CD47-like protein; Provisional
Probab=57.04 E-value=1.1e+02 Score=28.53 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=43.5
Q ss_pred CeEEEEEEEecc-----CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 442 SNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 442 ~~~~~~~~v~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
+.+.+.|.++-- ....++|..++...-..+.. +..++.+ +....-.|+|+|.|.+...++.....+..
T Consensus 32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKF-NFSKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEE-eccccCCCceeEEEeecccCccEEEEEEE
Confidence 445677777542 23458999888765221111 2234444 44555689999999987766644444433
Q ss_pred EEEEEEEeCC
Q psy7040 517 LGCSLKWNPP 526 (716)
Q Consensus 517 ~~v~l~W~~p 526 (716)
. .+|-.+
T Consensus 105 ~---~~WFs~ 111 (286)
T PHA03042 105 V---IKWFTS 111 (286)
T ss_pred E---EEccCh
Confidence 2 666544
No 420
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=56.36 E-value=1.3e+02 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.7
Q ss_pred ECCCCCCCceeEEEEEEcCCCceeeE
Q psy7040 486 VFDSKRGDSGIYTLAVKNSWGTDKGT 511 (716)
Q Consensus 486 i~~l~~~~~~~y~~~a~n~~g~~~~s 511 (716)
+..+..++.|..++.|.+.+|.....
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~~ 141 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQSTK 141 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEEE
Confidence 45788899999999999999976544
No 421
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=56.35 E-value=29 Score=26.87 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=20.8
Q ss_pred cCCeEEEEEEEeccC---CCeEEEEeCCeE
Q psy7040 440 AGSNFEFDINVIGEP---IPTKEWLCNDIT 466 (716)
Q Consensus 440 ~g~~~~~~~~v~~~p---~~~~~W~~~~~~ 466 (716)
.+..+.+.|.+.+.- ...+.|.+++..
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 456789999998844 347999998865
No 422
>PF14292 SusE: SusE outer membrane protein
Probab=55.14 E-value=1.1e+02 Score=24.75 Aligned_cols=67 Identities=15% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC--cEEEecccC--CCeEEec-----------CCCCCcEEEEEE
Q psy7040 63 VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWIPVGKTR--EPEMDVT-----------GLTPGHEYKFRV 127 (716)
Q Consensus 63 ~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~--~~~~~~~~~--~~~~~i~-----------~L~~~~~y~~~v 127 (716)
+.......++++|+++..........|.|+....+.. .-....... ..++.++ |+.++..+.+.+
T Consensus 39 L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l~~ 118 (122)
T PF14292_consen 39 LDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTLYW 118 (122)
T ss_pred ecccCCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEEEE
Confidence 3344556899999998754432355799998764421 112222111 2333332 677888777766
Q ss_pred EE
Q psy7040 128 KA 129 (716)
Q Consensus 128 ~a 129 (716)
|.
T Consensus 119 rV 120 (122)
T PF14292_consen 119 RV 120 (122)
T ss_pred EE
Confidence 65
No 423
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=54.76 E-value=22 Score=26.87 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=30.5
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEEcCCCCcee
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV 692 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~ 692 (716)
.+.|+.||+.+...... ..+. +.+...|.|++.+....|....
T Consensus 44 ~~~W~vdg~~~g~~~~~--~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPG--HQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cEEEEECCEEcccCCCC--CeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 78999999998433111 2222 3446789999999999997654
No 424
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=52.74 E-value=25 Score=27.46 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=18.3
Q ss_pred ceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeEeee
Q psy7040 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTI 657 (716)
Q Consensus 620 ~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~~~~ 657 (716)
..++|.+.+.||.=. .+ .+.|+++|+++..
T Consensus 17 ~~~tL~C~a~gFyP~--~i------~v~W~k~g~~~~~ 46 (102)
T cd05768 17 ETATLTCLVKGFSPS--DI------FVKWLQNGQPLSK 46 (102)
T ss_pred CceEEEEEEeeEeCC--CC------EEEEEECCEECCc
Confidence 456655555554321 01 7899999988653
No 425
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=48.35 E-value=4.7e+02 Score=29.89 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=47.3
Q ss_pred CCCCCCCcEEEeeeCCeEEEEecCCCCC-CCccceEEEEEEeecCC---CceEE---Ee-----ee-cCCCCeEEe--cC
Q psy7040 324 QPGKPGTPEIKDFDTDFVELAWTPPEQN-GGSPIVGYIIEKKEKYS---PIWEK---CA-----QT-EGDTPKGKV--LD 388 (716)
Q Consensus 324 ~p~~p~~~~~~~~~~~~i~l~W~~p~~~-~~~~i~~y~v~~~~~~~---~~~~~---~~-----~~-~~~~~~~~i--~~ 388 (716)
+|....+|++. ..+..|.|+|.+|+.+ ..+....|.|.+...-. ..... +. .. .+..-.+++ .+
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~ 833 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEG 833 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCc
Confidence 44555667764 4556699999998762 23367899998854320 00000 00 00 112222333 33
Q ss_pred C--CCCCeEEEEEEEEeCCCC
Q psy7040 389 L--IEGNQYEFRVLAVNKGGP 407 (716)
Q Consensus 389 l--~~~~~Y~~~v~a~n~~g~ 407 (716)
. +.++.|.|-++|.+..|.
T Consensus 834 ~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 834 IPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred ccccCCeEEEEEEEEEccccc
Confidence 2 246789999999998764
No 426
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=47.85 E-value=1.4e+02 Score=23.84 Aligned_cols=66 Identities=9% Similarity=0.103 Sum_probs=41.0
Q ss_pred EEEecCCeEEEEEEEeccCCC---eEEEEeCCeEe---------------ccCCcEEE--EeCCCeEEEEECCCCCCCce
Q psy7040 436 IKVRAGSNFEFDINVIGEPIP---TKEWLCNDITI---------------ISKDRFKI--VNDDKSTKLKVFDSKRGDSG 495 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v~~~p~~---~~~W~~~~~~~---------------~~~~~~~~--~~~~~~~~l~i~~l~~~~~~ 495 (716)
..+..+..++|.|...+.... .+.|.+..... ....++.+ ....+...|.+.+|+.+|..
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 446677778899988664433 35666532110 01122222 23346778999999999999
Q ss_pred eEEEEE
Q psy7040 496 IYTLAV 501 (716)
Q Consensus 496 ~y~~~a 501 (716)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999954
No 427
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=46.15 E-value=24 Score=27.11 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=17.0
Q ss_pred cceeEEEEEEeeEEEEeeeeccCceeeEEEEeCCeE
Q psy7040 619 LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKR 654 (716)
Q Consensus 619 ~~~v~l~w~i~~y~v~~~~~~~~~~~~~~W~~~~~~ 654 (716)
++.+.|.+.+.||.=.- + .++|.++|+.
T Consensus 16 ~~~~~L~C~a~gFyP~~--i------~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEP--V------TFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCC--c------EEEEeECCEE
Confidence 44566555555543210 0 7899999997
No 428
>PHA02982 hypothetical protein; Provisional
Probab=44.85 E-value=41 Score=29.72 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=47.9
Q ss_pred ceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCC
Q psy7040 174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ 253 (716)
Q Consensus 174 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~ 253 (716)
..+.....+..++|+|..+.+...|.|+|.|....+..+.- -+...+..+++.+.|.. .++-.
T Consensus 89 d~y~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c---------------~kCl~V~~~~V~~~W~e--~nNeT 151 (251)
T PHA02982 89 DKYALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETC---------------EKCLEIQKEDILYVVEE--HNNET 151 (251)
T ss_pred eeEEEEEeccceeEEeccCCcccCCceEEEEecCCCchhee---------------heeeeEecceEEEEEEe--cCCeE
Confidence 34567778889999999999999999999998766543221 13334445678888883 22333
Q ss_pred ccceEEEEE
Q psy7040 254 PIEKYVVDK 262 (716)
Q Consensus 254 ~~~~y~v~~ 262 (716)
.+.-|...+
T Consensus 152 ~V~CyVgS~ 160 (251)
T PHA02982 152 IITCFVGSK 160 (251)
T ss_pred EEEEEEEec
Confidence 344444443
No 429
>KOG1948|consensus
Probab=43.73 E-value=5.2e+02 Score=29.06 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCCCeEEecCCCCCCeEEEEEEEEeCCCCCCCCCCCCceEeecCCCCCcccccccccEEEecCCeEEEEEEEeccC
Q psy7040 379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP 454 (716)
Q Consensus 379 ~~~~~~~i~~l~~~~~Y~~~v~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~v~~~p 454 (716)
.....|.|.+|.|+..|.+++.+.-....-+.+.+...+..-.... ...+.-+....-....+.|.+....
T Consensus 943 denG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s~tv~vgneD-----v~glnf~af~q~kttdit~~V~~~~ 1013 (1165)
T KOG1948|consen 943 DENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRSFTVSVGNED-----VKGLNFMAFIQAKTTDITVEVGMDT 1013 (1165)
T ss_pred ccCCcEEEeccCCCceEEEEEeeccCCCcccccCCceEEEEecccc-----cCCceEEEEeccceEEEEEEEcccc
Confidence 3456899999999999999999874322223333322221111100 0112223344455567777776554
No 430
>KOG1225|consensus
Probab=43.17 E-value=1.3e+02 Score=31.73 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=88.5
Q ss_pred CCCCCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCCCC--cEEEecccCCCeEEecCCCCCcEEEEEEEEEecC
Q psy7040 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG--VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKE 133 (716)
Q Consensus 56 ~p~~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~--~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~ 133 (716)
.+++-+.+...+..++-+.|.... ....|...+...+.. .-.-........+.+..|.+++.|..+++++-..
T Consensus 367 ~~~~~~~~~~cs~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~ 441 (525)
T KOG1225|consen 367 ADPSLLLITECSPPSLCIAGVGRR-----RVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAAN 441 (525)
T ss_pred CCchhhcccccCCCceeecccccc-----ccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhh
Confidence 344555666778888999998221 133333333322211 1122222334688999999999999999987544
Q ss_pred ccCCCccccceEEecCCCCcccccccccceecccCCCCCCceEEEEecCCccEEEEeccccCcceEEEEEEEeCCCCcee
Q psy7040 134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSV 213 (716)
Q Consensus 134 g~~~~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~ 213 (716)
-.+.+........
T Consensus 442 ~~~~~~~~~~~~~------------------------------------------------------------------- 454 (525)
T KOG1225|consen 442 IGSLPKDKSETTV------------------------------------------------------------------- 454 (525)
T ss_pred hccCCcccccceE-------------------------------------------------------------------
Confidence 3333222221111
Q ss_pred EEEEEEecCCCCCCCCeEEeEEeCCeEEEEEECCCCCCCCccceEEEEEEeCCCCCeEEccccCcccceEEEcCCCCCCe
Q psy7040 214 EVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHK 293 (716)
Q Consensus 214 ~~~~~v~~~p~~p~~~~~~~~~~~~~~~l~W~~p~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~ 293 (716)
-..+.. +.+......++.+.|..|... ...|.+.+.......-. ..........+...+|.|++.
T Consensus 455 ---------~~~~g~-~~v~~~~~~s~e~~g~~~s~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~c~~ 519 (525)
T KOG1225|consen 455 ---------LCWNGG-LCVDGETESSLEVGGPCPSSG----TCGWEVRCGPCGNDGGV-NAEPPPECTSYDRTGLGPCTE 519 (525)
T ss_pred ---------eecCCc-eeeeeeeeccccccCCCCCcc----ccceEEEeeecCccccc-ccCCCCCCCCCCccCcccccc
Confidence 112233 677777888899999976542 44555555322221111 111222567888899999999
Q ss_pred EEEEE
Q psy7040 294 YKFRV 298 (716)
Q Consensus 294 y~~~v 298 (716)
|...+
T Consensus 520 ~~~~~ 524 (525)
T KOG1225|consen 520 YEVSV 524 (525)
T ss_pred eeccc
Confidence 87653
No 431
>KOG4597|consensus
Probab=42.45 E-value=36 Score=34.26 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=45.2
Q ss_pred eccCcee----eEEEEe---CCeEeeec--------ccceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy7040 638 SLMPISL----ESQYLM---NDKRVTID--------NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699 (716)
Q Consensus 638 ~~~~~~~----~~~W~~---~~~~~~~~--------~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~ 699 (716)
+.|.+.| .|.|.+ +++.+... .......|.|-+-...+++.|+|.|.|.+|.-.+++.+.+.
T Consensus 216 ~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 216 STCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 5666666 777765 33333222 23344789999999999999999999999998888776554
No 432
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=38.47 E-value=1.7e+02 Score=22.10 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=38.3
Q ss_pred EEecCCeEEEEEEEecc-----CCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEE
Q psy7040 437 KVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL 499 (716)
Q Consensus 437 ~~~~g~~~~~~~~v~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~ 499 (716)
.+..|.+++..|.+.-. ....+.|..++..+ +...+....+. ...+++.++.+...-.|-|
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~~-~SsVT~~~~~~~~~~L~cC 79 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVINDT-VSSVTLPNLNPTGATLFCC 79 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEESTT-EEEEEESS--SSEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCCe-EEEEEEccCCCCCceEEEE
Confidence 47899999999999522 44578999998844 44555555544 4788888876654433333
No 433
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=38.43 E-value=78 Score=24.48 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=24.6
Q ss_pred eEEEEeCCeEeeecc----------cceeeEEEEccCCCCCcEEEEEEEEcCCC
Q psy7040 645 ESQYLMNDKRVTIDN----------VDYFTKITIRPLQRSDTAQYTVTATNSQG 688 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~----------~~~~~~~~i~~l~~~~~y~y~~~a~n~~G 688 (716)
.+.|++....+.... ......+++.--..++.-+|+|+|.=..+
T Consensus 34 ~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 34 EIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred EEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 789988665443321 11223444444344445599999876554
No 434
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=37.62 E-value=97 Score=20.67 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=22.9
Q ss_pred eEEEEccCCCCCcEEEEEEEEcCCCCceeeE
Q psy7040 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFI 694 (716)
Q Consensus 664 ~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~ 694 (716)
-++.+..+ .+-.|.|++.|...+|......
T Consensus 14 Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~~ 43 (54)
T PF13754_consen 14 WSFTVPAL-ADGTYTITVTATDAAGNTSTSS 43 (54)
T ss_pred EEEeCCCC-CCccEEEEEEEEeCCCCCCCcc
Confidence 45566655 6778899999999999986553
No 435
>KOG1480|consensus
Probab=37.02 E-value=18 Score=38.77 Aligned_cols=70 Identities=21% Similarity=0.336 Sum_probs=51.5
Q ss_pred EEEecCCeEEEEEEE-eccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 436 IKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 436 ~~~~~g~~~~~~~~v-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
..|..+....+.|.- .+.|...+.|++++.......+..... .+.+++......+.++|+|.|.|..+..
T Consensus 139 q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 139 QEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS---DHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred heecccccccccccCcccchhhhhhccccCCCCCccccchhhh---cCCccccchhhhhcccceeeeehhhccc
Confidence 345566666676655 677888899999998876644433332 3468888889999999999999987654
No 436
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=36.88 E-value=37 Score=31.40 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=31.7
Q ss_pred eEEEEeC-CeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCC
Q psy7040 645 ESQYLMN-DKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQ 687 (716)
Q Consensus 645 ~~~W~~~-~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~ 687 (716)
.+.|... |+.+... ....+..|.+.+....++|.|+|..+-..
T Consensus 14 ~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 14 TYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 6789874 5544443 33444789999999999999999876554
No 437
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=32.48 E-value=53 Score=26.90 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred CccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEE
Q psy7040 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219 (716)
Q Consensus 183 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v 219 (716)
.+.+|.+...+.- .|+|+|.+.....+.+..+.|..
T Consensus 84 G~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 84 GNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp TB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 4667888886665 99999999987776666666655
No 438
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=31.51 E-value=3.4e+02 Score=23.35 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.1
Q ss_pred EcCCCCCCeEEEEEEEEcCCCCC
Q psy7040 574 IRPLQRSDTAQYTVTATNSQGKD 596 (716)
Q Consensus 574 i~~L~~~~~y~~~v~a~n~~G~~ 596 (716)
+..|+.+..|.++|.|.+.+|..
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~ 138 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQ 138 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCE
Confidence 45788999999999999999954
No 439
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=30.77 E-value=1.2e+02 Score=32.79 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=51.7
Q ss_pred CCceEEEEeCCeEEEEecCCCCCCCCccceEEEEEEcCC----------CCcEEEecccCCCeEEecCCCCCcEEEEEEE
Q psy7040 59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE----------TGVWIPVGKTREPEMDVTGLTPGHEYKFRVK 128 (716)
Q Consensus 59 ~~l~~~~~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~----------~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~ 128 (716)
..|++...+++.+.|+|+.. |. -..|.|++.... .-.|...+.+.....--..+.|.+.|.+||+
T Consensus 9 tslrI~kLsaN~v~l~WddV----G~-NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFed~~~p~t~Yk~Rv~ 83 (1030)
T PHA02579 9 TSLRIDKLSANQVYLTWDDV----GA-NFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFEDKLQPNTYYKFRVA 83 (1030)
T ss_pred cEEEhhhhccceEEEEeecc----CC-ceEEEEEEEeeccCCCccCCCccccceecCcccchhhhhhccCCcceEEEEEE
Confidence 34777788999999999963 33 566889886322 1236666655555555555999999999999
Q ss_pred EEec-CccCCCcc
Q psy7040 129 ALNK-EGESEPLE 140 (716)
Q Consensus 129 a~~~-~g~~~~s~ 140 (716)
..-. ...|.+..
T Consensus 84 ~~~qGFe~SdWv~ 96 (1030)
T PHA02579 84 VAAQGFEQSDWVY 96 (1030)
T ss_pred eeccCCCccccEE
Confidence 7543 22444443
No 440
>PHA03270 envelope glycoprotein C; Provisional
Probab=29.83 E-value=6.1e+02 Score=25.82 Aligned_cols=138 Identities=10% Similarity=-0.018 Sum_probs=0.0
Q ss_pred eeEEEEcCCCCCCeEEEEEEEEcCCCCCccceeeec---cCCCCCCccceeeccceeEEEEEEeeEEEEeeeeccCceee
Q psy7040 569 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV---TDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE 645 (716)
Q Consensus 569 ~~~~~i~~L~~~~~y~~~v~a~n~~G~~~~s~~~~v---~~~p~~~~~~~~~~~~~v~l~w~i~~y~v~~~~~~~~~~~~ 645 (716)
+..+.|..|+..+.+.|.=+..+..+.......+.| ..|-.....-..+.+....-.+.+.+|.=.... .
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~Ge~Y~AtC~va~YYPp~Sv-------~ 253 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLEGEPFGATCVAANYYPGDRA-------A 253 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCccccCCCceEEEEeeeecCCCce-------E
Q ss_pred EEEEeCCeEeeec-------ccceeeEEEEccCCCCCcE------EEEEEEEcCCCCceeeEEEEEecCCCCCCCCeEEE
Q psy7040 646 SQYLMNDKRVTID-------NVDYFTKITIRPLQRSDTA------QYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIW 712 (716)
Q Consensus 646 ~~W~~~~~~~~~~-------~~~~~~~~~i~~l~~~~~y------~y~~~a~n~~G~~~~s~~l~v~~~p~~p~~p~~~~ 712 (716)
++|++||.++..- .......-.++-|.....+ +++|.+.=-.+..+.+-.-....|---+++-|++.
T Consensus 254 lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~ 333 (466)
T PHA03270 254 FRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME 333 (466)
T ss_pred EEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE
Q ss_pred E
Q psy7040 713 M 713 (716)
Q Consensus 713 ~ 713 (716)
+
T Consensus 334 F 334 (466)
T PHA03270 334 F 334 (466)
T ss_pred E
No 441
>PHA03283 envelope glycoprotein E; Provisional
Probab=29.67 E-value=1.5e+02 Score=30.73 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=33.4
Q ss_pred eeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy7040 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703 (716)
Q Consensus 663 ~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~ 703 (716)
...++|.+...+++|.|.....|..|......-|+|..++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~ 173 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPK 173 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCc
Confidence 47899999999999999999999888556666677776433
No 442
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.77 E-value=2.4e+02 Score=19.84 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=36.0
Q ss_pred eEEEEeCCeEeccCCcEEEEe-CCCeEEEEECCCCCCCceeEEEEEEcCCCceeeEEEEEE
Q psy7040 457 TKEWLCNDITIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 457 ~~~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
...|++++..... +.+.. .+.-....-+.+.+...|..+|.+.++.|.--....+.+
T Consensus 8 ~H~W~~~g~~~~~---i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVAR---IPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEE---EEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 3578888876531 11111 122234555667778899999999999988766665554
No 443
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=25.52 E-value=56 Score=23.34 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.6
Q ss_pred CCCCCCeEEEEEEE
Q psy7040 576 PLQRSDTAQYTVTA 589 (716)
Q Consensus 576 ~L~~~~~y~~~v~a 589 (716)
.|+||..|.|+|+|
T Consensus 66 ~LEpGgdY~Ftira 79 (80)
T PF11344_consen 66 QLEPGGDYSFTIRA 79 (80)
T ss_pred eccCCCceEEEEec
Confidence 48899999999987
No 444
>PHA03283 envelope glycoprotein E; Provisional
Probab=24.51 E-value=2.8e+02 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=33.4
Q ss_pred CCccEEEEeccccCcceEEEEEEEeCCCCceeEEEEEEecCC
Q psy7040 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223 (716)
Q Consensus 182 ~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~~~v~~~p 223 (716)
.+.+.|+|.+.+++++|.|+....|..+.....+.|.|..++
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~ 172 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPP 172 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCC
Confidence 346889999999999999999999877755556666676643
No 445
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=24.38 E-value=3.1e+02 Score=20.55 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=34.5
Q ss_pred EEEEEEeccCCCeEEEEeCCeEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCceee
Q psy7040 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510 (716)
Q Consensus 445 ~~~~~v~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~~~ 510 (716)
.+.+.+.+. ...+.|+.++..+..... ...+. +.+...|.|++.+.+..|....
T Consensus 33 ~l~l~a~~~-~~~~~W~vdg~~~g~~~~--------~~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 33 PLVLKAAGG-RGPVYWFVDGEPLGTTQP--------GHQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred eEEEEEeCC-CCcEEEEECCEEcccCCC--------CCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 445555555 448999999988732221 11222 2335679999999999987654
No 446
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=24.24 E-value=2.6e+02 Score=19.58 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=33.3
Q ss_pred EecCCeEEEEEEEeccCCCeEEEEeCC-eEeccCCcEEEEeCCCeEEEEECCCCCCCceeEEEEEEcCCCce
Q psy7040 438 VRAGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508 (716)
Q Consensus 438 ~~~g~~~~~~~~v~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~~~a~n~~g~~ 508 (716)
+..|..+.|.+.........+.|..++ ......... ...... .-.|.+++.+.|..|..
T Consensus 8 ~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~---------t~ty~~---~G~y~V~ltv~n~~g~~ 67 (69)
T PF00801_consen 8 VPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSV---------THTYSS---PGTYTVTLTVTNGVGSA 67 (69)
T ss_dssp EBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEE---------EEEESS---SEEEEEEEEEEETTSEE
T ss_pred EcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCE---------EEEcCC---CeEEEEEEEEEECCCCc
Confidence 556777788776633444568898887 222222222 333332 23566677888888754
No 447
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=24.23 E-value=3e+02 Score=20.34 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=25.1
Q ss_pred eEEEEeCCeEeeecccceeeEEEEccCCCCCcEEEEEEEE
Q psy7040 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684 (716)
Q Consensus 645 ~~~W~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~y~~~a~ 684 (716)
.+.|...+..+... ........+...|.|.+.|.|.
T Consensus 28 ~~~l~~~~~k~~~~----~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 28 SLFLENPGKKSLET----KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEEECSSCEEEEE----SSEEEEESBTCGGSEEEEEEEE
T ss_pred hheeeccCcccccc----ceEEEEecCCCCCCEEEEEEEc
Confidence 56676665544221 2566777888899999999994
No 448
>PHA03271 envelope glycoprotein C; Provisional
Probab=24.01 E-value=7.7e+02 Score=25.01 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCCeEEEEEEEEcCCCC
Q psy7040 570 TKITIRPLQRSDTAQYTVTATNSQGK 595 (716)
Q Consensus 570 ~~~~i~~L~~~~~y~~~v~a~n~~G~ 595 (716)
..+.|.++...+.+.|++...+....
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~ 232 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNR 232 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCC
Confidence 67888899999999888877775443
No 449
>KOG1480|consensus
Probab=23.95 E-value=39 Score=36.46 Aligned_cols=46 Identities=28% Similarity=0.295 Sum_probs=36.9
Q ss_pred eEEEEeCCeEeeec---ccceeeEEEEccCCCCCcEEEEEEEEcCCCCc
Q psy7040 645 ESQYLMNDKRVTID---NVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690 (716)
Q Consensus 645 ~~~W~~~~~~~~~~---~~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~ 690 (716)
.++|++++..+.++ ....-..+++..++..|.++|+|.|.|-.+.-
T Consensus 161 e~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 161 EVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccc
Confidence 77999998877664 11122678999999999999999999988875
No 450
>PF14292 SusE: SusE outer membrane protein
Probab=23.28 E-value=4e+02 Score=21.50 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=24.2
Q ss_pred cEEEeeeCCeEEEEecCCCCCCCccceEEEEEEeecC
Q psy7040 331 PEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY 367 (716)
Q Consensus 331 ~~~~~~~~~~i~l~W~~p~~~~~~~i~~y~v~~~~~~ 367 (716)
+.+.......++++|+++..........|.++....+
T Consensus 37 i~L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 37 IVLDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred EEecccCCceEEEEEECCccCCCCCceEEEEEEeccC
Confidence 4444345568999999976543323457999887644
No 451
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=23.24 E-value=2.7e+02 Score=29.13 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=21.1
Q ss_pred cceeeEEEEccCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy7040 660 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704 (716)
Q Consensus 660 ~~~~~~~~i~~l~~~~~y~y~~~a~n~~G~~~~s~~l~v~~~p~~ 704 (716)
......+.+.+|.+++.|.|++.+.+. ...+..=.+.+.|..
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~---~~~s~~g~~rT~p~~ 101 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGG---GQTSPVGRFRTAPDG 101 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--T---TEE---EEEE--TT-
T ss_pred CCeEeecccCCCCCCceEEEEEEEecC---CCCCCceEEEcCCCC
Confidence 445578999999999999999998321 222333345555444
No 452
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=22.69 E-value=3.9e+02 Score=21.08 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=38.9
Q ss_pred EeCCeEEEEecCCCCCCCCccceEEEEEEcCCCCcEEEecccCCCeEEecCCCCCcEEEEEEEEEecCccCCCc
Q psy7040 66 IHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139 (716)
Q Consensus 66 ~~~~s~~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~~~~g~~~~s 139 (716)
...-.+.|+|+.= .|.+-+.|.|.+... .-|.-.......+.++. ...|-.|.++|++.|..|.+.+.
T Consensus 31 ~d~v~V~V~wnvW---sG~~Gd~a~vl~dg~--~V~~G~~~~~~~~at~~-v~kgG~y~m~V~lCn~dGCS~S~ 98 (106)
T cd02848 31 KDAADVSVKWNAW---SGDPGDTYKVLLDGK--EVWSGALTGSSGTATFK-VGKGGRYQMQVALCNGDGCSTSA 98 (106)
T ss_pred ccceEEEEEEeee---cCCCCcEEEEEECCe--EEEcccCCCCccEEEEE-eCCCCeEEEEEEEECCCCccCcC
Confidence 3345799999863 444456777766321 01110001111233333 56677999999999999966543
No 453
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=20.15 E-value=3.4e+02 Score=19.48 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=16.4
Q ss_pred CceeEEEEEEcCCCceeeEEEEEE
Q psy7040 493 DSGIYTLAVKNSWGTDKGTAKVTV 516 (716)
Q Consensus 493 ~~~~y~~~a~n~~g~~~~s~~~~v 516 (716)
-.|.+++.+.|..|.......+.+
T Consensus 55 G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 55 GTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred cEEEEEEEEEcCCCcEEEEEEEEE
Confidence 357778888999885555555443
Done!