RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7040
(716 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 211 bits (538), Expect = 7e-62
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 6/240 (2%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
K L + D G Y TA N G E + + D PS P G K+ +
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGV-KIIELS 208
Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF 296
+ + PD GG PI Y VD + A+ W + G T + + L PN Y+
Sbjct: 209 QTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIV-RSHGVQTMVVLNNLEPNTTYEI 267
Query: 297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI 356
RV AVN +G+ + I P +P P + +L+ T + GG+PI
Sbjct: 268 RVAAVNGKGQGDYSKI--EIFQTLPVREPSPPS-IHGQPSSGKSFKLSITKQDD-GGAPI 323
Query: 357 VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ YI++ + K + +G+ + L YE ++ A N+ G EP+
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Score = 126 bits (317), Expect = 2e-31
Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 34/254 (13%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------PP 226
+V+ ++ L ++ + +D+G Y A + G + + + P
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114
Query: 227 GGPLKVSNVHAEG---VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
G P+ +S + ++ W+ + + + G L
Sbjct: 115 GNPINIS-CDVKSNPPASIHWRR----DKLVLPAKNTTNLKT---------YSTGRKMIL 160
Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL 343
E+ N ++ A N G + + P P +I + ++
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTR---FQEYILALADV---PSSPYGVKIIELSQTTAKV 214
Query: 344 AWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 403
++ P+ +GG PI Y ++ KE S IW+ ++ G + +L YE RV AVN
Sbjct: 215 SFNKPDSHGGVPIHHYQVDVKEVASEIWKI-VRSHGVQTMVVLNNLEPNTTYEIRVAAVN 273
Query: 404 KGGPGEPSDPTAPH 417
G G+ S
Sbjct: 274 GKGQGDYSKIEIFQ 287
Score = 116 bits (291), Expect = 5e-28
Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 59/316 (18%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDK 480
+ +P +Q + G+ +V P + W + + + +K+ K + +
Sbjct: 98 EYAPKFISNQ-TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR 156
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-----------------CSLKW 523
L++ + D G Y N GT + + + +
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSF 216
Query: 524 NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTA 583
N P+ GG PI +Y V+ E + W V T + + L+ + T
Sbjct: 217 NKPDSHGGVPIHHYQVDVKEVASE----IWKIVRSHGVQ-------TMVVLNNLEPNTTY 265
Query: 584 QYTVTATNSQGK-DQVFIEVVVTDKPSAPEGPIQWLLTLTD----VTWE--------ISN 630
+ V A N +G+ D IE+ T P P + ++ I
Sbjct: 266 EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILE 325
Query: 631 YLQE--LHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
Y+ + LE + N + ++++ + ++ +TA N G
Sbjct: 326 YIVKYRSKDKEDQW-LEKKVQGNKDHIILEHLQWTMGYEVQ-----------ITAANRLG 373
Query: 689 K-DQVFIEVVVTDKPS 703
+ E + KP+
Sbjct: 374 YSEPTVYEFSMPPKPN 389
Score = 106 bits (265), Expect = 8e-25
Identities = 50/304 (16%), Positives = 92/304 (30%), Gaps = 34/304 (11%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------CNDITIISKDRFKIVNDDKSTKL 484
QL + + GEPIP W + R ++ S+ L
Sbjct: 6 QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
+ D K DSG Y + G + + + + P+ Y +
Sbjct: 66 HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE------YAPKFIS--NQTIYYSWEGNP 117
Query: 545 DTGKVL--------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
I W R N + + + I P +D +Y TA
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT--WEISNYLQELHSSLMPISLESQ 647
TN G + + D PS+P G L+ T + + + ++ +
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDS--HGGVPIHHYQVDVK 235
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
+ ++ + + T + + L+ + T + V A N +G+ + P
Sbjct: 236 EVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS 295
Query: 708 PIQI 711
P I
Sbjct: 296 PPSI 299
Score = 85.6 bits (212), Expect = 5e-18
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDVT 115
P G ++ + + + +NKP GG P+ Y V+ + + +W V + + +
Sbjct: 199 PYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLN 257
Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK 153
L P Y+ RV A+N +G+ + + I P +
Sbjct: 258 NLEPNTTYEIRVAAVNGKGQGDYSK--IEIFQTLPVRE 293
Score = 85.6 bits (212), Expect = 6e-18
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 200 YTVTAENINGK----DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
V A N G+ + + + +PSPP + + L DD GG PI
Sbjct: 267 IRVAAVNGKGQGDYSKIEIFQTLPVREPSPP--SIHGQPSSGKSFKLSITKQDD-GGAPI 323
Query: 256 EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+Y+V + + +G + +E L Y+ ++ A N+ G SEP S
Sbjct: 324 LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Query: 316 IEAK 319
+ K
Sbjct: 384 MPPK 387
Score = 70.6 bits (173), Expect = 4e-13
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 41 GEPLEGYLVEKDRGLDPEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG 99
G+ + + + +P P + L K DDGG P+ Y+V+ +
Sbjct: 278 GDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKE 336
Query: 100 VWIPVGKTR--EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
K + + + + L Y+ ++ A N+ G SEP S+ +
Sbjct: 337 DQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 387
Score = 46.7 bits (111), Expect = 2e-05
Identities = 10/72 (13%), Positives = 25/72 (34%)
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
+ D R+ + + + I+ ++ SD+ +Y A + G Q + + +
Sbjct: 40 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Query: 701 KPSAPEGPIQIW 712
P +
Sbjct: 100 APKFISNQTIYY 111
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 188 bits (480), Expect = 6e-56
Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 7/202 (3%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+D P PP KV V VTL W P DGG I+ Y+V+K + ++ T
Sbjct: 2 AMDTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVA-TNC 59
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDT 338
T +V+ L Y FRV A N+ G P T S++A P PG + D
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER---PLPPGKITLMDVTR 116
Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
+ V L+W PE +GGS I+GYI+E + K S W C + + LI+G +Y FR
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATC--ATVKVTEATITGLIQGEEYSFR 174
Query: 399 VLAVNKGGPGEPSDPTAPHIAR 420
V A N+ G +P + P IA+
Sbjct: 175 VSAQNEKGISDPRQLSVPVIAK 196
Score = 110 bits (277), Expect = 6e-28
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 56/195 (28%)
Query: 10 TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEK------------------ 51
P P+ +V + K TL W+ P DGG ++ Y+VEK
Sbjct: 4 DTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62
Query: 52 ---DRGLDPE----------------------------------GPLEVSNIHKDGCTLK 74
L G + + ++ ++ +L
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLS 122
Query: 75 WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG 134
W KP+ DGG + GY+VE + W + E +TGL G EY FRV A N++G
Sbjct: 123 WEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKG 182
Query: 135 ESEPLETFSSIIARD 149
S+P + +IA+D
Sbjct: 183 ISDPRQLSVPVIAKD 197
Score = 97.0 bits (242), Expect = 3e-23
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 200 YTVTAENINGKD--SVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
+ V AEN G + E + ++P PPG + +V V+L W+ P+ DGG I
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKI-TLMDVTRNSVSLSWEKPEHDGGSRIL 135
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
Y+V+ + + +W VT + GLI +Y FRV A N++G S+P + +
Sbjct: 136 GYIVEMQTKGSDKWATC--ATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193
Query: 317 EAK 319
AK
Sbjct: 194 IAK 196
Score = 89.3 bits (222), Expect = 1e-20
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
P L+V + K TL W+ P DGG ++ Y+VEK + + V + V
Sbjct: 7 GPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKV 66
Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
L G Y FRV A N+ G P ET S+ A +
Sbjct: 67 DQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER 102
Score = 57.7 bits (140), Expect = 1e-09
Identities = 41/180 (22%), Positives = 66/180 (36%), Gaps = 29/180 (16%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+L W+PP DGG+ I+ Y+VEK E+ + T + LQ
Sbjct: 22 VTLTWDPPLLDGGSKIKNYIVEKRESTRK----AYSTVATNCHK-------TSWKVDQLQ 70
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPIQWLLTLTD----VTWEISNY 631
+ + V A N G ++P P L+ +T ++WE +
Sbjct: 71 EGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKIT--LMDVTRNSVSLSWEKPEH 128
Query: 632 LQELHSSLMPIS---LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
I +E Q +DK T V T+ TI L + + + V+A N +G
Sbjct: 129 DG-----GSRILGYIVEMQTKGSDKWATCATVKV-TEATITGLIQGEEYSFRVSAQNEKG 182
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 183 bits (467), Expect = 6e-54
Identities = 47/214 (21%), Positives = 71/214 (33%), Gaps = 15/214 (7%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE------- 275
PP P V+ + E V L W VP +DG + V +M W +
Sbjct: 2 TYPPT-PPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60
Query: 276 ----TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI--EAKNPFNQPGKPG 329
G V L P H Y+FR+ AV ++ T+A + + P
Sbjct: 61 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120
Query: 330 TPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLD 388
EI+++ V L W+ I GY + S + K K+
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 389 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 422
L YEF++ + + E S R K
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 86.0 bits (213), Expect = 3e-19
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD--- 113
P P V+ + + L+W P++DG + + + + W
Sbjct: 4 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63
Query: 114 ----------VTGLTPGHEYKFRVKALNKEGESEPLET 141
VT L P H Y+FR+ A+ +++ T
Sbjct: 64 SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 101
Score = 76.4 bits (188), Expect = 6e-16
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 6/113 (5%)
Query: 42 EPLEGYLVEKDRGLDPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET 98
+ ++ LDP LE+ + L W+ D + GY +
Sbjct: 100 NTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSS 159
Query: 99 -GVWIPVGKTREP--EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
G + + L Y+F++++ + SE R
Sbjct: 160 AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 48.3 bits (115), Expect = 2e-06
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 13/105 (12%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND-----KRVTIDNVDYFTKIT 573
L+W P +DG + + + +M W TND K + +
Sbjct: 18 VMLRWMVPRNDGLPIVIFKVQYRMVGKRK----NWQTTNDNIPYGKPKWNSELGKSFTAS 73
Query: 574 IRPLQRSDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAPEGP 614
+ L+ T ++ + A S + + P
Sbjct: 74 VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV 118
Score = 46.7 bits (111), Expect = 6e-06
Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
L W+ D I Y + + ++ + + I PL+
Sbjct: 132 VVLHWSLASDADEHLITGYYAYYRPSSSAG---EYFKATIEGAHA------RSFKIAPLE 182
Query: 579 RSDTAQYTVTATNSQG 594
+ ++ + + ++
Sbjct: 183 TATMYEFKLQSFSAAS 198
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 180 bits (457), Expect = 1e-52
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 9/200 (4%)
Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET- 276
D PS P + ++ + + P+ GG PI KY + W
Sbjct: 4 AQADTPSSPS--IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 277 --EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
+ + GL P Y R+ A+N +G E + AS P +P P
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI--SAASEFKTQPVREPSAPKLEGQM 119
Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ 394
D + +++ + +GGSPI Y++ + S W+ + + + L +
Sbjct: 120 GEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEIRLPSGSDHVMLKSLDWNAE 177
Query: 395 YEFRVLAVNKGGPGEPSDPT 414
YE V+A N+ G + +
Sbjct: 178 YEVYVVAENQQGKSKAAHFV 197
Score = 86.0 bits (213), Expect = 3e-19
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 5/127 (3%)
Query: 200 YTVTAENINGK-DSVEVEVIVLDKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIE 256
+ A N G + P P + ++ DD GG PI
Sbjct: 83 VRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIR 141
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
Y+V + + W P + ++ L N +Y+ V A N+QGKS+
Sbjct: 142 HYLV-RYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRT 200
Query: 317 EAKNPFN 323
A + +
Sbjct: 201 AAAHHHH 207
Score = 84.5 bits (209), Expect = 8e-19
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 57 PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-----REP 110
P P ++ + +++++P+ GG P+ Y E VW E
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
+ + GL P Y R+ ALN +G E S P
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAA--SEFKTQPVR 108
Score = 74.5 bits (183), Expect = 2e-15
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 41 GEPLEGYLVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPET 98
GE + +P P + + K DDGG P+ YLV Y +
Sbjct: 94 GEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVR-YRALS 151
Query: 99 GVWIPVGKT--REPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY 151
W P + + + L EY+ V A N++G+S+ A +
Sbjct: 152 SEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
Score = 59.8 bits (145), Expect = 3e-10
Identities = 30/193 (15%), Positives = 53/193 (27%), Gaps = 32/193 (16%)
Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
+ ++++ PE GG PI Y E W
Sbjct: 16 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE----VWHSKWY---DAKEASMEG 68
Query: 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLT------DV 624
+TI L+ T + A N +G ++ +P + + V
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKV 128
Query: 625 TWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDT 676
I +YL + E + V + ++D+ + +
Sbjct: 129 NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVY------- 181
Query: 677 AQYTVTATNSQGK 689
V A N QGK
Sbjct: 182 ----VVAENQQGK 190
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 148 bits (375), Expect = 4e-41
Identities = 46/200 (23%), Positives = 69/200 (34%), Gaps = 7/200 (3%)
Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT-GRWTPAGET 276
IV D P+ P A+ + W+ D PI Y + T W A E
Sbjct: 1 IVQDVPNAPKLT--GITCQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEK 57
Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF 336
V + P Y FRV A NK G S P + S + P P +
Sbjct: 58 VPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ-PDVPFKNPDNVVGQGT 116
Query: 337 DTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPI-WEKCAQTEGDTPKGKVLDLIEGNQ 394
+ + + ++WTP PE +P Y + K WE + + D +
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVK 176
Query: 395 YEFRVLAVNKGGPGEPSDPT 414
Y +V+A+N G +
Sbjct: 177 YLIKVVAINDRGESNVAAEE 196
Score = 90.5 bits (225), Expect = 7e-21
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 10/137 (7%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPK 383
P P I E+ W + SPI+ Y I+ ++P W+ + +T
Sbjct: 6 PNAPKLTGITCQAD-KAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 443
V+ + Y FRV+A NK G PS + + P+ N ++ +
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKN---PDNVVGQGTEP 118
Query: 444 FEFDINVIGEPIPTKEW 460
+ + P+P E
Sbjct: 119 NN--LVISWTPMPEIEH 133
Score = 65.1 bits (159), Expect = 4e-12
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPEMD-- 113
P+ D + W + D P+ Y ++ W +
Sbjct: 9 PKLT--GITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSF 65
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
V ++P Y FRV A NK G S P
Sbjct: 66 VVQMSPWANYTFRVIAFNKIGASPPSAH 93
Score = 53.2 bits (128), Expect = 5e-08
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 9/106 (8%)
Query: 41 GEPLEGYLVEKDRGLDPEGP---LEVSNIHKDGCTLKWNK-PKDDGGEPLEGYLVEKYDP 96
P + P + + + W P+ + P Y V +
Sbjct: 88 SPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKR 146
Query: 97 ETGV--WIP--VGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ W + R+ + + +Y +V A+N GES
Sbjct: 147 DIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNV 192
Score = 41.6 bits (98), Expect = 3e-04
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+ W D +PI +Y ++ + T W + V + +
Sbjct: 21 AEIHWEQQ-GDNRSPILHYTIQFNTSFTPA---SWDAAY------EKVPNTDSSFVVQMS 70
Query: 579 RSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGP 614
+ V A N G + T +P P
Sbjct: 71 PWANYTFRVIAFNKIGASPPSAHSDSCTT-QPDVPFKN 107
Score = 34.7 bits (80), Expect = 0.068
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 20/82 (24%)
Query: 519 CSLKWNP-PEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK-----RVTIDNVDYFTKI 572
+ W P PE + AP +Y V W N + I + F K
Sbjct: 121 LVISWTPMPEIEHNAPNFHYYVSWKRDIPAA---AWENNNIFDWRQNNIVIADQPTFVKY 177
Query: 573 TIRPLQRSDTAQYTVTATNSQG 594
I+ V A N +G
Sbjct: 178 LIK-----------VVAINDRG 188
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 153 bits (388), Expect = 1e-39
Identities = 62/406 (15%), Positives = 109/406 (26%), Gaps = 41/406 (10%)
Query: 42 EPLEGYLVEKDRGLDPEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGV 100
+ + V K + P + S L W P L Y ++ +
Sbjct: 187 DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL-KYNIQYRTKDAST 245
Query: 101 WIPV----GKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP------ 150
W + + V L P EY FR++ + ++G+ +
Sbjct: 246 WSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK 305
Query: 151 ------------YSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQ----- 193
Y +V + + G + +V + + L
Sbjct: 306 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLT 365
Query: 194 ---RADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD 249
D T+T N+ GK D+ + + D + + + ++W P +
Sbjct: 366 VNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 425
Query: 250 DGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ I ++ V E L + Y V V G P
Sbjct: 426 SVKKYILEWCVLSDKAPCITDWQQ-EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP 484
Query: 310 LTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT-PPEQNGGSPIVGYIIEKKEKYS 368
SI+A P K T K + L W P I Y I +
Sbjct: 485 ----ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 369 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
E + + + L Y R+ A G + + T
Sbjct: 541 --NETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 150 bits (381), Expect = 1e-38
Identities = 75/538 (13%), Positives = 141/538 (26%), Gaps = 76/538 (14%)
Query: 194 RADAGFYTVTAENINGKDSVE--VEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG 251
+ T + + +I P P L + + +W +
Sbjct: 72 ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH 130
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT 311
+ + + + P + + + V A N GK
Sbjct: 131 L--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH 188
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
K N P + + + ++L WT P I+ Y I+ + K + W
Sbjct: 189 INFDPVYKVKPNPPHNL-SVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTW 246
Query: 372 EKCA--QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN 429
+ T V DL +Y FR+ + + G G SD + + P
Sbjct: 247 SQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKA 306
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--IISKDRFKIVNDDKSTKLKVF 487
I + ++ + +P E I ++ R+K + +
Sbjct: 307 PSFWYKIDPSHTQG-YRTVQLVWKTLPPFEANG-KILDYEVTLTRWKSHLQNYTVNATKL 364
Query: 488 -DSKRGDSGIYTLAVKNSWGT------------DKGTAKVTVL-------GCSLKWNPPE 527
+ D + TL V+N G + T V L ++W P
Sbjct: 365 TVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR 424
Query: 528 DDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
+ I + V + + T + N+ I V
Sbjct: 425 ESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLIT-----------V 473
Query: 588 TATNSQGKDQVFIEVVVT--DKPSAPEGPIQWLLTLT--DVTWE----------ISNY-- 631
T + G PS + + W+ I NY
Sbjct: 474 TPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI 533
Query: 632 -LQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
+ + N+ V +D+ T+ T+ L + A +G
Sbjct: 534 FYRTIIG-------------NETAVNVDSSH--TEYTLSSLTSDTLYMVRMAAYTDEG 576
Score = 108 bits (271), Expect = 8e-25
Identities = 66/423 (15%), Positives = 116/423 (27%), Gaps = 69/423 (16%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
PE P L +W+ ++ LE K + T + R+
Sbjct: 103 PEKPKNLSCIVNEGKKMRCEWDGGRETH---LETNFTLKSEWATHKFADCKAKRDTPTSC 159
Query: 115 T---GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSN---- 167
T + V+A N G+ + + + ++S ++S + S+
Sbjct: 160 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 219
Query: 168 -------------------QPCGSGMVRKVQHLDYNTKLGVRMAQRADAG---FYTVTAE 205
+ + ++ D + Q + +
Sbjct: 220 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 279
Query: 206 NINGKD-----SVEVEVIVL-DKPSPPGGPLKVSNVHAEG----VTLDWK-VPDDDGGQP 254
+GK S E I D+PS + V L WK +P +
Sbjct: 280 KEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGK 339
Query: 255 IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
I Y V + V ++ + N +Y + N GKS+ T
Sbjct: 340 ILDYEVTLTRWKSHLQNY------TVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTI 393
Query: 315 SIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC 374
+ + + + WT P ++ I+ + + +
Sbjct: 394 PACDFQATHPV----MDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW-- 447
Query: 375 AQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPS---------DPTAPHIARAKK 423
Q E T L +L E Y V V GPG P P+ R KK
Sbjct: 448 -QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKK 506
Query: 424 VSP 426
V
Sbjct: 507 VGK 509
Score = 57.7 bits (139), Expect = 9e-09
Identities = 21/184 (11%), Positives = 44/184 (23%), Gaps = 55/184 (29%)
Query: 10 TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKDR---------------- 53
A + + ++W P++ + + + V D+
Sbjct: 397 DFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456
Query: 54 -----GLDP---------------EGP------------------LEVSNIHKDGCTLKW 75
L G + + K+ L+W
Sbjct: 457 TYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEW 516
Query: 76 NK-PKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG 134
++ P D + Y + + E ++ LT Y R+ A EG
Sbjct: 517 DQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG 576
Query: 135 ESEP 138
+
Sbjct: 577 GKDG 580
Score = 42.7 bits (100), Expect = 4e-04
Identities = 31/202 (15%), Positives = 57/202 (28%), Gaps = 27/202 (13%)
Query: 516 VLGCSLKWNPPEDDG-GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITI 574
C LK + A + + I VT ++
Sbjct: 22 TAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ--YTIINRTASSVTFTDI-------- 71
Query: 575 RPLQRSDTAQYT--VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT--WEISN 630
S Q T + ++ I ++ P P+ + + W+
Sbjct: 72 ----ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGG- 126
Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR-PLQRSDTAQYTVTATNSQGK 689
+E H +L+S++ + D T T+ + V A N+ GK
Sbjct: 127 --RETHLETN-FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
Query: 690 ---DQVFIEVVVTDKPSAPEGP 708
D + + V KP+ P
Sbjct: 184 VTSDHINFDPVYKVKPNPPHNL 205
Score = 40.0 bits (93), Expect = 0.003
Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 26/205 (12%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTG---KVLIKWIRTNDKRVTIDNVDYFTKITIR 575
L W P I Y ++ D ++ + + T+ ++ FT+ R
Sbjct: 217 LKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275
Query: 576 PLQRSDTAQYTVTATNSQGKD---QVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL 632
+ GK E P + + + +
Sbjct: 276 -----------IRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTV 324
Query: 633 QELHSSLMPISLESQYL------MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686
Q + +L P + L K + TK+T+ +D T+T N
Sbjct: 325 QLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNL 382
Query: 687 QGKDQVFIEVVVTDKPSAPEGPIQI 711
GK + + A + +
Sbjct: 383 VGKSDAAVLTIPACDFQATHPVMDL 407
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 148 bits (375), Expect = 2e-39
Identities = 55/370 (14%), Positives = 103/370 (27%), Gaps = 60/370 (16%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR---EPEMDVTGLTPGHEYKFRVK 128
T+ W + + GY + + + + L+PG EY V
Sbjct: 21 TVSWERS---TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVY 77
Query: 129 ALNKEGESEPLE------------------TFSSIIAR------DPYSKYT-SVSSLDSH 163
+ + ES P+ T SSI R Y +V +
Sbjct: 78 TVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEG 137
Query: 164 KRSNQPCGSGMVRK--VQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+ V V L+ + V G +S +
Sbjct: 138 IPIFEDFVDSSVGYYTVTGLEPGIDYDIS-----------VITLINGG-ESAPTTLTQQT 185
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
PP L+ +N+ + + + W P + ++V
Sbjct: 186 AVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDN 241
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
+ + L+P +Y V +V +Q +S PL P + D +
Sbjct: 242 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG-------LDSPTGIDFSDITANSF 294
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
+ W P + I GY I ++ + + + +L G +Y ++A
Sbjct: 295 TVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVA 350
Query: 402 VNKGGPGEPS 411
+N
Sbjct: 351 LNGREESPLL 360
Score = 123 bits (310), Expect = 1e-30
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 21/233 (9%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
+V + K+SV + ++ + L ++ + L W + I Y
Sbjct: 74 VSVYTVK-DDKESVPISDTIIPEVPQLTD-LSFVDITDSSIGLRWTPLN---SSTIIGYR 128
Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ + G + V V GL P Y V + G+S P T T
Sbjct: 129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA-- 186
Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
P + D + + W PP + +++ +
Sbjct: 187 -----VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
+ +L+ G +Y V +V + P +P ++
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA 291
Score = 103 bits (258), Expect = 7e-24
Identities = 37/196 (18%), Positives = 57/196 (29%), Gaps = 15/196 (7%)
Query: 223 PSPPGGPLKVSNV-HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPV 280
P P L + +T+ W+ I Y + + E
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQ 58
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF 340
+ + L P +Y V V +S P++ T E + D
Sbjct: 59 SSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPE-------VPQLTDLSFVDITDSS 111
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
+ L WTP S I+GY I I + V L G Y+ V+
Sbjct: 112 IGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVI 168
Query: 401 AVNKGGPGEPSDPTAP 416
+ GG P+ T
Sbjct: 169 TLINGGESAPTTLTQQ 184
Score = 100 bits (250), Expect = 7e-23
Identities = 48/292 (16%), Positives = 79/292 (27%), Gaps = 51/292 (17%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPE 111
+ L +I L+W + GY + G+ I
Sbjct: 95 EVPQLTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS------------------- 152
VTGL PG +Y V L GES P P
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP 211
Query: 153 ---------KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVT 203
+Y+ V + + + S + +L T+ V V+
Sbjct: 212 SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLPGTEYVVS-----------VS 259
Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
+ +S + P G + S++ A T+ W P I Y +
Sbjct: 260 SVYEQH-ESTPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRHH 313
Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
E + + L P +Y + A+N + +S L S
Sbjct: 314 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Score = 64.8 bits (158), Expect = 3e-11
Identities = 48/396 (12%), Positives = 96/396 (24%), Gaps = 67/396 (16%)
Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKC-AQTEGDTPKGKVLDLIEGNQY 395
DT + ++W I GY I D +L G +Y
Sbjct: 16 DTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEY 72
Query: 396 EFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIKV-----RAGSNF 444
V V P + ++ S I + + +
Sbjct: 73 NVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD-------SSIGLRWTPLNSSTII 125
Query: 445 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVK 502
+ I V+ + D S + + + + V G T
Sbjct: 126 GYRITVV--AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPT--TL 181
Query: 503 NSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW-IRT 556
+ + W PP + ++V + + + I
Sbjct: 182 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 238
Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+D V + N+ T+ + V++ Q + T +P G
Sbjct: 239 SDNAVVLTNLLPGTEYVVS-----------VSSVYEQHESTPLRGRQKTG-LDSPTGIDF 286
Query: 617 WLLTLT--DVTWE-----ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
+T V W I+ Y H + + + IT+
Sbjct: 287 SDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSR----------NSITLT 336
Query: 670 PLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
L ++ A N + + + + +
Sbjct: 337 NLTPGTEYVVSIVALNGRE-ESPLLIGQQSTVSAHH 371
Score = 56.7 bits (137), Expect = 1e-08
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 45 EGYLVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI 102
E + P L +NI D + W P L +LV + +
Sbjct: 175 ESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDV 231
Query: 103 P--VGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ + +T L PG EY V ++ ++ ES PL
Sbjct: 232 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG 272
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 146 bits (370), Expect = 9e-39
Identities = 57/392 (14%), Positives = 100/392 (25%), Gaps = 62/392 (15%)
Query: 55 LDPEGPLEVSNI-HKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REP 110
L P L + T+ W + + GY + + + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLE------------------TFSSIIAR---- 148
L+PG EY V + + ES P+ ++
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPP 118
Query: 149 --DPYSKYT---SVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVT 203
+ + S + S + +L T+ V V+
Sbjct: 119 PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVS-----------VS 167
Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
+ +S + P G + S++ A T+ W P I Y +
Sbjct: 168 SVYEQH-ESTPLRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPRA----TITGYRIRHH 221
Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
E + + L P +Y + A+N + +S L S
Sbjct: 222 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTV------ 275
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
P E+ + ++W P + Y I E + G
Sbjct: 276 -SDVPRDLEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKST 330
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ L G Y V AV G S
Sbjct: 331 ATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362
Score = 103 bits (258), Expect = 6e-24
Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 20/211 (9%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET-EGPVT 281
SPP +N +T+ W+ I Y + + E +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
+ L P +Y V V +S P++ T P + D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA-------VPPPTDLRFTNIGPDTM 111
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
+ W PP + +++ + + +L+ G +Y V +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168
Query: 402 VNKGGPGEPS------DPTAPHIARAKKVSP 426
V + P +P ++
Sbjct: 169 VYEQHESTPLRGRQKTGLDSPTGIDFSDITA 199
Score = 100 bits (250), Expect = 6e-23
Identities = 48/297 (16%), Positives = 81/297 (27%), Gaps = 54/297 (18%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPE 111
+ P L +NI D + W P L +LV + + +
Sbjct: 94 AVPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNA 150
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS------------------- 152
+ +T L PG EY V ++ ++ ES PL P
Sbjct: 151 VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR 210
Query: 153 --------KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYT--V 202
++ + P S + +L T+ Y +
Sbjct: 211 ATITGYRIRHHPEHFSGRPREDRVP-HSRNSITLTNLTPGTE-------------YVVSI 256
Query: 203 TAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDK 262
A N +S + P L+V + + W P + Y +
Sbjct: 257 VALNGRE-ESPLLIGQQSTVSDVPR-DLEVVAATPTSLLISWDAPAV----TVRYYRITY 310
Query: 263 MDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ G + + GL P Y V AV +G S + SI +
Sbjct: 311 GETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
Score = 35.2 bits (81), Expect = 0.070
Identities = 23/198 (11%), Positives = 50/198 (25%), Gaps = 34/198 (17%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
++ W I Y + T+ + ++ V D + T L
Sbjct: 20 TVSWERSTTP---DITGYRITTTPTNGQ-----QGNSLEEVVHADQ----SSCTFDNLSP 67
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD--VTW------EISNY 631
+V + I + P + VTW +++N+
Sbjct: 68 GLEYNVSVYTVKDDKESVP-ISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNF 126
Query: 632 LQELHSSLMPISLESQYLMNDKR-VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
L + + V + N+ T+ + V++ Q +
Sbjct: 127 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVS-----------VSSVYEQH-E 174
Query: 691 QVFIEVVVTDKPSAPEGP 708
+ +P G
Sbjct: 175 STPLRGRQKTGLDSPTGI 192
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 135 bits (342), Expect = 9e-36
Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 20/224 (8%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
S +EV+ P LK + V ++ W P + Y V +
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKT 61
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
+ + V GL+ KY+ V A+ S P + P
Sbjct: 62 GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLEN-----VSPP 116
Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
+ D + ++W I G+ ++ + + D +
Sbjct: 117 RRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQ-RTIKPDVRSYTITG 171
Query: 389 LIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
L G Y+ + +N P AP R +P
Sbjct: 172 LQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTP 215
Score = 132 bits (335), Expect = 9e-35
Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 18/216 (8%)
Query: 201 TVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
+V A + V L+ SPP +V++ +T+ W+ + I +
Sbjct: 90 SVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTE----TITGFQ 144
Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
VD + + V + GL P YK + +N +S P+ AS
Sbjct: 145 VDAVPANGQTPIQR-TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTA-- 201
Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG 379
P + + ++W PP + I GYII+ ++ SP E +
Sbjct: 202 -----IDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRP 252
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ + L G +Y V+A+ EP
Sbjct: 253 GVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288
Score = 121 bits (306), Expect = 7e-31
Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 32/296 (10%)
Query: 40 GGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG 99
++ + + L+ + + + +W P L GY V E
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVTPKEKT 61
Query: 100 VWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSV 157
+ + V+GL +Y+ V AL S P + + + + V
Sbjct: 62 GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARV 121
Query: 158 SSLDSHKRS---NQPCGSGMVR--KVQHLDYNTKLGVRMAQRADAGFYTVT--------- 203
+ + + + +V + N + ++ + D YT+T
Sbjct: 122 TDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYK 179
Query: 204 ----AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
N N S V + P L+ + + W+ P I Y+
Sbjct: 180 IYLYTLNDNA-RSSPVVIDASTAIDAPSN-LRFLATTPNSLLVSWQPPRA----RITGYI 233
Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ + VT + GL P +Y V A+ KSEPL
Sbjct: 234 IKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRKK 289
Score = 79.5 bits (196), Expect = 2e-16
Identities = 21/116 (18%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
A + S L A P + + WTPP + GY
Sbjct: 2 AHHHHHHSSGLEVLFQGPAIPA------PTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51
Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ K K D+ V L+ +YE V A+ P+
Sbjct: 52 RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 107
Score = 40.2 bits (94), Expect = 0.001
Identities = 28/192 (14%), Positives = 53/192 (27%), Gaps = 43/192 (22%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
++ W I + V+ + + + + I+ + + TI + T I
Sbjct: 130 TISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIY---- 181
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT-------WE----- 627
+ N + + + + AP L T W+
Sbjct: 182 -------LYTLNDNARSSP-VVIDASTAIDAPSN-----LRFLATTPNSLLVSWQPPRAR 228
Query: 628 ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 687
I+ Y+ I E + V T+ TI L+ V A +
Sbjct: 229 ITGYI---------IKYEKPG-SPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN 278
Query: 688 GKDQVFIEVVVT 699
K + I T
Sbjct: 279 QKSEPLIGRKKT 290
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 134 bits (338), Expect = 6e-35
Identities = 61/267 (22%), Positives = 100/267 (37%), Gaps = 12/267 (4%)
Query: 164 KRSNQPCGSGMVRKVQHLDY-NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
++ + G+ ++Q +L + DA Y V A N G S + V
Sbjct: 40 RQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVP 99
Query: 223 PS--PPGGPLKVSNVHA-EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
P + VHA G + K+P P+ + + T
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTD 339
+ + G+ + V A N+ G T ++ + P P ++ D D
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGID---QKTVELDVADV---PDPPRGVKVSDVSRD 213
Query: 340 FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
V L WT P +GGS I YI+EK + W + + + V++L Y+FRV
Sbjct: 214 SVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVG--QARETRYTVINLFGKTSYQFRV 271
Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSP 426
+A NK G +PS+P+ P I + K
Sbjct: 272 IAENKFGLSKPSEPSEPTITKEDKTRA 298
Score = 115 bits (290), Expect = 1e-28
Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 36/247 (14%)
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 447
+ + + ++V A N+GG + + K+ + + + G
Sbjct: 68 SVTDDDATVYQVRATNQGGSVSGTASL--EVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506
I G+P P W I + ++++ ++ + +R D+G Y + KN +G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185
Query: 507 TDKGTAKVTVLG-----------------CSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
D+ T ++ V +L W P DGG+ I Y+VEK T
Sbjct: 186 IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE-- 243
Query: 550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVT-- 605
+W+R R T+ T+ L + Q+ V A N G + E +T
Sbjct: 244 --RWLRVGQAR--------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 606 DKPSAPE 612
DK A
Sbjct: 294 DKTRAMN 300
Score = 104 bits (260), Expect = 1e-24
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
P G +VS++ +D L W +P DGG + Y+VEK W+ VG+ RE V
Sbjct: 202 PRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVIN 260
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSK 153
L Y+FRV A NK G S+P E I ++ ++
Sbjct: 261 LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTR 297
Score = 95.6 bits (238), Expect = 9e-22
Identities = 66/323 (20%), Positives = 114/323 (35%), Gaps = 55/323 (17%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKI-VNDDKS 481
++P+ +++L ++ VR SN V G P P +W II +++I
Sbjct: 3 MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
+L + D+ +Y + N G+ GTA + V P + P +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV------EVPAKIH--LPKTLEGMGA 113
Query: 542 METDTGKVL-------------IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDT 582
+ G+V+ I W I N I + + + ++R D
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT-------WEISNYLQEL 635
Y V A N G DQ +E+ V D P P G ++DV+ W
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVADVPDPPRGVK-----VSDVSRDSVNLTWTEPAS---D 225
Query: 636 HSSLMPIS---LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ- 691
S I+ +E ++ + + T+ T+ L + Q+ V A N G +
Sbjct: 226 GGS--KITNYIVEKCATTAERWLRVGQAR-ETRYTVINLFGKTSYQFRVIAENKFGLSKP 282
Query: 692 -VFIEVVVT--DKPSAPEGPIQI 711
E +T DK A ++
Sbjct: 283 SEPSEPTITKEDKTRAMNYDEEV 305
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 140 bits (353), Expect = 6e-35
Identities = 51/441 (11%), Positives = 111/441 (25%), Gaps = 82/441 (18%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDG 251
+G + G + + P P L+ + + + + + W +
Sbjct: 130 VDNECSGVKKCCSNGC-GHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNIS 188
Query: 252 GQPI-------EKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQ 304
+P+ Y + ++ W + +++ + P+ Y+FRV AVN
Sbjct: 189 IEPVIYVVQRRWNYGIHPSEDDATHWQTV--AQTTDERVQLTDIRPSRWYQFRVAAVNVH 246
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDF-----VELAWTPPEQNGGSPIVGY 359
G + + + P P + + + V + W PE+ P+ Y
Sbjct: 247 GTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHY 305
Query: 360 IIE------KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
+ K ++ T+G + L Y + A+ G
Sbjct: 306 KVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA 365
Query: 414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 473
+ + ++ +K R G P E
Sbjct: 366 KVSLHFTSTHATN----NKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG------------ 409
Query: 474 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP 533
D ++KV W K
Sbjct: 410 APFYQDGQLQVKV-----------------YW----------------KKTEDPTVNRYH 436
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
+ ++ T T++ + + ++ + K + V +
Sbjct: 437 VRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVT-----------VQPIRPK 485
Query: 594 GKDQVFIEVVVTDKPSAPEGP 614
+ T SA +G
Sbjct: 486 SHSKAEAVFFTTPPCSALKGK 506
Score = 115 bits (288), Expect = 8e-27
Identities = 51/413 (12%), Positives = 102/413 (24%), Gaps = 102/413 (24%)
Query: 40 GGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPL-------EGYLVE 92
G + K L P L + + +KW+ + EP+ Y +
Sbjct: 146 GHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIH 205
Query: 93 KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
+ + W V +T + + +T + P Y+FRV A+N G + S
Sbjct: 206 PSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265
Query: 153 KYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDS 212
+ ++L N
Sbjct: 266 APPAPANL------------------------------------------RLANSTVNSD 283
Query: 213 VEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWT 271
V V ++ D P P P+ + W K
Sbjct: 284 GSVTVTIVWDLPEEPDIPV-------HHYKVFWSWMVSSKSLVPTK------------KK 324
Query: 272 PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
T+G + +E L P+ Y ++A+ G++ + S+ + K
Sbjct: 325 RRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLV 384
Query: 332 EIKDFDTDF--------------------------VELAWTPPEQNGGSPIVGYIIEKKE 365
+ + V++ W E + Y +
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTED---PTVNRYHVRWFP 441
Query: 366 KYSP----IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ + + + DL +Y+ V + +
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVF 494
Score = 110 bits (276), Expect = 2e-25
Identities = 57/424 (13%), Positives = 113/424 (26%), Gaps = 108/424 (25%)
Query: 59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE--------KYDPETGVWIPVGKTREP 110
V++ T+ W+ P++ P+ Y V P +
Sbjct: 276 ANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQN 334
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPC 170
+ + L P +Y ++A+ G++ S+ ++
Sbjct: 335 SVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA------------------ 376
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPL 230
T E + ++ + + P PL
Sbjct: 377 ------------------------------TNNKEQLVKTRKGGIQTQLPFQRRRPTRPL 406
Query: 231 KVSNVHAEG----VTLDWKVPDDDGGQPIEKYVVDKMDEATG----RWTPAGETEGPVTG 282
+V + V + WK +D + +Y V EA + A
Sbjct: 407 EVGAPFYQDGQLQVKVYWKKTEDP---TVNRYHVRWFPEACAHNRTTGSEASSGMTHENY 463
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSE--------PLTTTASIEAKNPFN----------- 323
+ ++ L + KYK V+ + + S+ P + ++ P
Sbjct: 464 IILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSK 523
Query: 324 ---QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP---------IW 371
+P I +W + N P+ G+ + E + I
Sbjct: 524 VLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSII 583
Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD---------PTAPHIARAK 422
+ D V +L Y V + GG G + P++ H + K
Sbjct: 584 SQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLK 643
Query: 423 KVSP 426
P
Sbjct: 644 HRHP 647
Score = 100 bits (250), Expect = 3e-22
Identities = 52/325 (16%), Positives = 87/325 (26%), Gaps = 78/325 (24%)
Query: 57 PEGPLEVSNIHKDG----CTLKWNKPKDDGGEPLEGYLVEKY------DPETGVWIPVGK 106
P PLEV + W K +D + Y V + + TG G
Sbjct: 402 PTRPLEVGAPFYQDGQLQVKVYWKKTED---PTVNRYHVRWFPEACAHNRTTGSEASSGM 458
Query: 107 TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRS 166
T E + + L+ +YK V+ + + S+ F + S+L
Sbjct: 459 THENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTT---------PPCSALKGKSHK 509
Query: 167 NQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
C ++ V VL KP
Sbjct: 510 PIGCLG--------------------------------------EAGHVLSKVLAKPENL 531
Query: 227 GGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---------E 277
V +V+ WK+ + QP+ + V + T +
Sbjct: 532 SASFIVQDVNIT-GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILP 590
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFD 337
L V L P+ Y+ V+ + G+ T P P +K
Sbjct: 591 SDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRT----PELPPSSAHRSHLKHRH 646
Query: 338 TDFVELAWTPPEQNGGSPIVGYIIE 362
+ P + G PI ++
Sbjct: 647 PH----HYKPSPERYGKPIPNPLLG 667
Score = 45.3 bits (106), Expect = 6e-05
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 33/132 (25%)
Query: 12 PAKPEGPLEVSNIHKDGCT--LKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKD 69
AKPE + T W K + +P+ G+ V
Sbjct: 525 LAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQV-------------------- 564
Query: 70 GCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKA 129
T + + + +P + V L P Y+ V+
Sbjct: 565 --TWAEVTTESRQNSLPNSIISQS------QILPSDHY---VLTVPNLRPSTLYRLEVQV 613
Query: 130 LNKEGESEPLET 141
L GE
Sbjct: 614 LTPGGEGPATIK 625
Score = 38.8 bits (89), Expect = 0.006
Identities = 22/198 (11%), Positives = 41/198 (20%), Gaps = 69/198 (34%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
W K + +P+ G+ V + T + + + P Y V L
Sbjct: 545 HFSWKMAKANLYQPMTGFQVT-WAEVTTES-RQNSLPNSIISQSQILPSDHYVLTVPNLR 602
Query: 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM 191
P + Y
Sbjct: 603 ------------------PSTLYR------------------------------------ 608
Query: 192 AQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD 250
V G+ + + P + + H +K +
Sbjct: 609 --------LEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPH----HYKPSPER 656
Query: 251 GGQPIEKYVVDKMDEATG 268
G+PI ++ TG
Sbjct: 657 YGKPIPNPLLGLDSTRTG 674
Score = 30.3 bits (67), Expect = 2.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 522 KWNPPEDDGGAPIEYYMVEKMETDTGK 548
+ P + G PI ++ T TG
Sbjct: 649 HYKPSPERYGKPIPNPLLGLDSTRTGH 675
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 136 bits (344), Expect = 3e-34
Identities = 43/235 (18%), Positives = 77/235 (32%), Gaps = 17/235 (7%)
Query: 190 RMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDD 249
+ G + E + + + +P L + A+ V L W P D
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAK-VELRWTPPQD 358
Query: 250 DGGQPIEKYVV--DKMDEATGRWTPAGETEGPV--------TGLEVEGLIPNHKYKFRVR 299
GG+ Y V ++ +G P + T + V L P+ Y F V
Sbjct: 359 SGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVE 418
Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
A N + S + +P ++ T + ++W+ P + Y
Sbjct: 419 ARNGVSGLVT---SRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKY 474
Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ ++K +TEG + + DL Y +V A+ + G G S
Sbjct: 475 EVTYRKKGDSNSYNVRRTEGFS--VTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
Score = 86.8 bits (214), Expect = 6e-18
Identities = 51/322 (15%), Positives = 85/322 (26%), Gaps = 47/322 (14%)
Query: 146 IARDPYSKYTSVSSLDSHKRSNQPCGSGMV-RKVQHLDYNTKLGVRMAQRADAGFYTVTA 204
+ ++K +++ + S+ + + + + T+ G +A + + +
Sbjct: 139 FQKRLFTKIDTIAPDEITVSSDFEARHVKLNVEERSVGPLTRKGFYLAFQDIGACVALLS 198
Query: 205 ENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMD 264
+ K E+ + P G S G +D V G +P
Sbjct: 199 VRVYYKKCPELLQGLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHC------ 252
Query: 265 EATGRWT-PAGETE-GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEA---- 318
G W P G+ + F+ A P T S E
Sbjct: 253 AVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSC 312
Query: 319 --------------KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
P +P VEL WTPP+ +GG + Y + +
Sbjct: 313 ECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCE 372
Query: 365 EKYSPIWEKC----------AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-- 412
+ + E V DL Y F V A N S
Sbjct: 373 QCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSF 432
Query: 413 --------PTAPHIARAKKVSP 426
T P R + S
Sbjct: 433 RTASVSINQTEPPKVRLEGRST 454
Score = 64.4 bits (156), Expect = 7e-11
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
+ + ++ W+ P + Y V V +T + +
Sbjct: 442 TEPPKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRRTEGFSVTLD 500
Query: 116 GLTPGHEYKFRVKALNKEGESEP 138
L P Y +V+AL +EG+
Sbjct: 501 DLAPDTTYLVQVQALTQEGQGAG 523
Score = 59.8 bits (144), Expect = 2e-09
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 57 PEGPLEVSNIHKDGC-TLKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPVGK------- 106
P P ++ + L+W P+D GG Y V + PE+G P
Sbjct: 334 PSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEP 393
Query: 107 ---TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
+ V+ L P Y F V+A N +F + +
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQT 442
Score = 55.2 bits (132), Expect = 5e-08
Identities = 25/194 (12%), Positives = 45/194 (23%), Gaps = 22/194 (11%)
Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
E + + S FK + + G + + +
Sbjct: 269 AGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASM 328
Query: 516 VLGC-----------------SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND 558
L+W PP+D GG Y V + +
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASV 388
Query: 559 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPI 615
+ + T +T+ L+ +TV A N + P
Sbjct: 389 RYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVR 448
Query: 616 QWLLTLT--DVTWE 627
+ T V+W
Sbjct: 449 LEGRSTTSLSVSWS 462
Score = 32.8 bits (74), Expect = 0.46
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
S+ W+ P + Y V + RT VT+D++ T ++
Sbjct: 458 SVSWSIPPPQQS-RVWKYEVTYRKKGDSNS-YNVRRTEGFSVTLDDLAPDTTYLVQ---- 511
Query: 580 SDTAQYTVTATNSQG 594
V A +G
Sbjct: 512 -------VQALTQEG 519
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 126 bits (318), Expect = 2e-33
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
K+ + + L V D G Y TA N G++S+E ++ D PS P +
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSID--QVEPY 125
Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE---VEGLIPNHK 293
+ + + P+ GG PI KY + W + + GL P
Sbjct: 126 SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT 185
Query: 294 YKFRVRAVNKQGKSEPLTTT 313
Y R+ A+N +G E +
Sbjct: 186 YAVRLAALNGKGLGEISAAS 205
Score = 112 bits (282), Expect = 2e-28
Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 28/206 (13%)
Query: 408 GEPSDPTAPHIARAKKVS-PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
+ ++ + R + P + + G+ V P T W +
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQL 58
Query: 467 IISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG------ 518
+ S + KI N ++ L+V D G Y N G + +
Sbjct: 59 LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS 118
Query: 519 ----------CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDY 568
++++ PE GG PI Y E KW
Sbjct: 119 IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY-------DAKEASM 171
Query: 569 FTKITIRPLQRSDTAQYTVTATNSQG 594
+TI L+ T + A N +G
Sbjct: 172 EGIVTIVGLKPETTYAVRLAALNGKG 197
Score = 96.8 bits (241), Expect = 5e-23
Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 10/143 (6%)
Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
+ LEV N + AVN+ G+ + + + P P +++
Sbjct: 70 YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE---SLEFILVQADT---PSSPSIDQVE 123
Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG---KVLDLIE 391
+ + ++ + PE GG PI+ Y E + +W + ++ L
Sbjct: 124 PY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP 182
Query: 392 GNQYEFRVLAVNKGGPGEPSDPT 414
Y R+ A+N G GE S +
Sbjct: 183 ETTYAVRLAALNGKGLGEISAAS 205
Score = 77.9 bits (192), Expect = 2e-16
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 55 LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT----- 107
D ++ + +++++P+ GG P+ Y E VW
Sbjct: 111 ADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170
Query: 108 REPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
E + + GL P Y R+ ALN +G E
Sbjct: 171 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Score = 68.3 bits (167), Expect = 3e-13
Identities = 30/155 (19%), Positives = 50/155 (32%), Gaps = 24/155 (15%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
I W R +N + I N + + + P +D Y TA N G++ + +V
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 604 VTDKPSAPEGP----------IQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDK 653
D PS+P +Q+ I Y E + + + K
Sbjct: 110 QADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAE-------WRAVGEEVWHSK 162
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
+TI L+ T + A N +G
Sbjct: 163 WYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKG 197
Score = 63.7 bits (155), Expect = 1e-11
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI 709
N + I N + + + P +D Y TA N G++ + +V D PS+P
Sbjct: 63 NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ 121
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 132 bits (333), Expect = 3e-32
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 14/248 (5%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
+ + V + DAG Y G +V+ +P P P ++++V
Sbjct: 214 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASV 273
Query: 236 HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYK 295
A + + +G PI V + A+G W T ++ L P+ +Y+
Sbjct: 274 GATYLWIQLNANSINGDGPIVAREV-EYCTASGSWNDR--QPVDSTSYKIGHLDPDTEYE 330
Query: 296 FRVRAVNKQ--GKSEPLTTTASIEAKNPFNQPGK-PGTPEIKDFDTDFVELAWTPPEQNG 352
V G P ++ + P + P E+ + + + + W P N
Sbjct: 331 ISVLLTRPGEGGTGSP---GPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNV 387
Query: 353 GSP-----IVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP 407
V Y + + E TE P+ + +L +++ +N G
Sbjct: 388 TRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGR 447
Query: 408 GEPSDPTA 415
E +
Sbjct: 448 KESQELIV 455
Score = 131 bits (331), Expect = 6e-32
Identities = 68/471 (14%), Positives = 118/471 (25%), Gaps = 90/471 (19%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
P P +++++ ++ N +G P+ VE Y +G W +
Sbjct: 263 VPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVE-YCTASGSWNDRQPVDSTSYKIG 321
Query: 116 GLTPGHEYKFRVKALNK--EGESEPLETFSSI-IARDPYSKYTSVSSLDSHKRS------ 166
L P EY+ V G P + DP + ++ R
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWE 381
Query: 167 --NQPCGSGMV-------RKVQHLDYNTKLGVRMAQRADAGFYT-------------VTA 204
+ V +T +
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLIL 441
Query: 205 ENINGK-DSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV-- 260
N G+ +S E+ V D P + E + L W+ P G I Y +
Sbjct: 442 MNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITY 500
Query: 261 -----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ + G T GL P Y F +RA +G P A+
Sbjct: 501 KAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPP----AT 556
Query: 316 IEAKNPFNQPGKPGTPEIKDFDT--DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
+ + P P + + V + P G P+ Y I +E+ +K
Sbjct: 557 NQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEERPRRTKK 615
Query: 374 ------------------------------CAQTEGDTPKGKVLD-----------LIEG 392
A + + D L+
Sbjct: 616 TTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPY 675
Query: 393 NQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 443
Y A ++ D A P ++ +D V+ +
Sbjct: 676 KSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTKH 726
Score = 107 bits (267), Expect = 4e-24
Identities = 86/596 (14%), Positives = 157/596 (26%), Gaps = 104/596 (17%)
Query: 198 GFYTVTAENINGK-------DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD 250
FY V E I D V+V + V + T
Sbjct: 133 NFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRT 192
Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
+ +A + + + V K+R + G
Sbjct: 193 VAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252
Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
++ P P++ ++ + NG PIV +E
Sbjct: 253 YAELVVKE-----PPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS- 306
Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 430
W + D+ K+ L +YE VL G G P R K P
Sbjct: 307 WN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRG- 362
Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
++V + + I EP C+ + +++ ++ + +D++
Sbjct: 363 --PRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTE 418
Query: 491 RGDSGI----------YTLAVK--NSWG----------TDKGT-------AKVTVLGCS- 520
++ + N G TD+ +
Sbjct: 419 NSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEK 478
Query: 521 --LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
L+W P G I Y + + I + + + N +F L
Sbjct: 479 IFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHF---LFFGLY 534
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT---DKPSAPEGPIQWLLTLTD----VTWE---- 627
T +T+ A+ ++G T PS P ++ L TD V +
Sbjct: 535 PGTTYSFTIRASTAKG-FGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS 593
Query: 628 ----ISNY---------------LQELHSSLMPISLESQYLMNDK--------------- 653
+S Y + L +PI ++ L+N +
Sbjct: 594 RGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAA 653
Query: 654 -RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
TI + + PL + + A + + V V K +A P
Sbjct: 654 QPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKP 709
Score = 101 bits (252), Expect = 2e-22
Identities = 78/577 (13%), Positives = 148/577 (25%), Gaps = 96/577 (16%)
Query: 93 KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
+ P + + + +V T K+R + G ++ ++ ++P
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI--SNYAELVVKEPPV 263
Query: 153 KYTSVSSLDSHKRS-------NQPCGSGMVRKVQHLDYNTKLGVRMA-QRADAGFYTVT- 203
N G G + ++Y T G Q D+ Y +
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSINGDGPIVAR-EVEYCTASGSWNDRQPVDSTSYKIGH 322
Query: 204 ------------AENIN----GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKV 246
G + P L+V V + +T+ W+
Sbjct: 323 LDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP 382
Query: 247 PDDDGGQ-PIEKYVVDKMDEATG----RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
+ + V + G R + +TE + L P ++ +
Sbjct: 383 FGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILM 442
Query: 302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTP-EIKDFDTDFVELAWTPPEQNGGSPIVGYI 360
N +G+ E + + PG T + + L W P Q G I Y
Sbjct: 443 NPEGRKESQELIV----QTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYE 497
Query: 361 IEKKEKYSPIWEKCAQTE-------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
I K S E + G+ L G Y F + A G G P
Sbjct: 498 ITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP---P 554
Query: 414 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF 473
+ + + + + V+ +P +
Sbjct: 555 ATNQFTTKISAPSMPAYELETPLNQTDNT-----VTVMLKP-----AHSRGAPVSV---- 600
Query: 474 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP 533
Y + V+ + +L C ++
Sbjct: 601 -----------------------YQIVVEEE-RPRRTKKTTEILKCYPVPIHFQNASLLN 636
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
+YY + D+ + TI + + PL + + A +
Sbjct: 637 SQYYFAAEFPADSL--------QAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRA 688
Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISN 630
+ V V K +A P+ TD T + +
Sbjct: 689 NGETKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTK 725
Score = 88.3 bits (218), Expect = 3e-18
Identities = 62/432 (14%), Positives = 125/432 (28%), Gaps = 76/432 (17%)
Query: 330 TPEIKDFDT---DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
P++K+ DT DF + G V + +PIW + ++
Sbjct: 66 LPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAEL 125
Query: 387 -LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE 445
+ N Y+ + G G + + +P+ ++ +++V AG
Sbjct: 126 AISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL--RIQNVEVNAGQFAT 183
Query: 446 FDINVIGEPIPTKEWL--CNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVK 502
F + IG + D+ K+ + + V ++ + D+G Y ++
Sbjct: 184 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Query: 503 NSWGTDKGTAKVTVLG------------------CSLKWNPPEDDGGAPIEYYMVEKMET 544
G V+ ++ N +G PI VE
Sbjct: 244 TEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA 303
Query: 545 DTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ--GKDQVFIEV 602
+ + R +D+ T I L + +V T G +
Sbjct: 304 SG---------SWNDRQPVDS----TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPAL 350
Query: 603 VVTDKPSAPEGPIQWL----LTLTD--VTWE----------ISNY-----LQELHSSLMP 641
K + P + L + + WE N Q +
Sbjct: 351 RTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVR 410
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT-- 699
+ + + TI N+ +T ++++ + N +G+ + +V T
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVK-----------LILMNPEGRKESQELIVQTDE 459
Query: 700 DKPSAPEGPIQI 711
D P A
Sbjct: 460 DLPGAVPTESIQ 471
Score = 41.3 bits (96), Expect = 0.001
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 9/135 (6%)
Query: 12 PAKPEGPLEVSNIHKDGC-TLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDG 70
P+ P LE D T+ G P+ Y + +
Sbjct: 566 PSMPAYELETPLNQTDNTVTVMLKPAHSRGA-PVSVYQIVVEEE---RPRRTKKTTEILK 621
Query: 71 CTLKWNKPKDDGGEPLEGYLVEKYD----PETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
C ++ + Y ++ + T L P Y+
Sbjct: 622 CYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIY 681
Query: 127 VKALNKEGESEPLET 141
+A ++ ++
Sbjct: 682 FQAASRANGETKIDC 696
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 118 bits (298), Expect = 1e-31
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G V DKP P P +H+ + W P D+GG I KYVV+ + + G
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63
Query: 269 -RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
+W G + L P Y+ RV ++ G+S S+ + P
Sbjct: 64 NKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPS 118
Query: 328 PG 329
G
Sbjct: 119 SG 120
Score = 104 bits (260), Expect = 1e-26
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-VWIPVGKTREPEMDVT 115
P P IH + W+ PKD+GG + Y+VE + G W + E
Sbjct: 21 PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCD 80
Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
L PG Y+ RV ++ G+S E S++ + P
Sbjct: 81 RLNPGCFYRLRVYCISDGGQSAVSE---SLLVQTP 112
Score = 94.0 bits (234), Expect = 4e-23
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIK-DFDTDFVELAWTPPEQNGGSPIVGYIIEK 363
G S + T + PG P P +K + ++ W PP+ NGG+ I Y++E
Sbjct: 4 GSSGVVEFTTCPDK------PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57
Query: 364 KEKYSP-IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
E + WE G T + L G Y RV ++ GG S+
Sbjct: 58 AEGSNGNKWEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110
Score = 54.7 bits (132), Expect = 2e-09
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
K+ + W+PP+D+GGA I Y+VE E G KW
Sbjct: 27 KGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGN---KWEMIYS--------GATR 75
Query: 571 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ L + V + G+ V ++V +
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGPSS 119
Score = 28.9 bits (65), Expect = 2.0
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 23/127 (18%)
Query: 594 GKDQVFIEVVVTDKPSAPEGP------------IQWLLTLTDVTWEISNYLQELHSSLMP 641
G V DKP P P I W + I+ Y+
Sbjct: 4 GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYV--------- 54
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
+E N + + + L + V + G+ V ++V
Sbjct: 55 --VEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTP 112
Query: 702 PSAPEGP 708
+
Sbjct: 113 AVSGPSS 119
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 117 bits (294), Expect = 3e-31
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G +++ ++D+P PP +K+ +V E V L W P DDG I Y + K D+ +
Sbjct: 4 GSSGASIDIQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSM 62
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS--IEAKNP 321
W E T + L+ ++Y FRV + N G SE T T + A++
Sbjct: 63 EWFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
Score = 112 bits (281), Expect = 2e-29
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
PG P +I+D + V L WTPP+ +G + I GY I+K +K S W
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVI-EHYHRTSA 76
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
+ +L+ GN+Y FRV + N G E + T A+ Y
Sbjct: 77 TITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119
Score = 98.6 bits (246), Expect = 1e-24
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
P +++ ++ + L W PKDDG + GY ++K D ++ W V + +
Sbjct: 19 GPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATI 78
Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET--FSSIIARDP 150
T L G+EY FRV + N G SE S++IARD
Sbjct: 79 TELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116
Score = 50.8 bits (122), Expect = 5e-08
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 504 SWGTDKGTAKVTVLG-----------------CSLKWNPPEDDGGAPIEYYMVEKMETDT 546
S G+ + + ++ +L W PP+DDG A I Y ++K + +
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKS 61
Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 594
+W + T TI L + + V + N G
Sbjct: 62 M----EWFTVIE---HYHR----TSATITELVIGNEYYFRVFSENMCG 98
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT 625
S G I++ + D+P P+ + DV
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIV-----KIEDVW 30
Score = 28.1 bits (63), Expect = 4.5
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 686 SQGKDQVFIEVVVTDKPSAPEGP 708
S G I++ + D+P P+
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIV 24
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 125 bits (315), Expect = 3e-30
Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 35/331 (10%)
Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
++ A N G S A +V P+ + + + + G + F +V G
Sbjct: 171 QYNCSASNPLGTASSS---AKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHVTGTAP 226
Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
W ++ I +K+ + + L V +GD+G YT N G D +A++
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286
Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TG--KVLIKWIR-----TNDKRVTI 563
V PP + + T G ++ + W + + +
Sbjct: 287 VQE------PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM 340
Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD 623
V+ + + L D+ YT A N+ G + V + P +
Sbjct: 341 SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHP 393
Query: 624 VTWEISNYLQ---ELHSSLMPI---SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
V + EL + + + L + K+ I + ++ T I I + +D
Sbjct: 394 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIG 453
Query: 678 QYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+Y A+N G D + + P +
Sbjct: 454 EYQCKASNDVGSDTCVGSITLKAPPRFVKKL 484
Score = 112 bits (281), Expect = 5e-26
Identities = 48/308 (15%), Positives = 96/308 (31%), Gaps = 55/308 (17%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+ P + V+ + ++ + G P W ++ I +F++ +
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L++++ DSG YT N+ G+ + + V PP P ++
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------PPVFRKK-PHPVETLKGA 400
Query: 543 ETD-----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
+ G + W + + K+ I + ++ T I I + +D +Y A+
Sbjct: 401 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460
Query: 591 NSQGKDQVFIEVVVTDKP---------SAPEGPIQWLLTLT---------DVTWEISNYL 632
N G D + + P S G + L V W
Sbjct: 461 NDVGSDTCVGSITLKAPPRFVKKLSDISTVVGE---EVQLQATIEGAEPISVAWFKDK-- 515
Query: 633 QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV 692
I ES + I + + + ++ +YT N G +
Sbjct: 516 -------GEIVRESD------NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Query: 693 FIEVVVTD 700
F + V +
Sbjct: 563 FATLSVLE 570
Score = 109 bits (275), Expect = 3e-25
Identities = 48/314 (15%), Positives = 97/314 (30%), Gaps = 63/314 (20%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
PY + L ++ G V G P W + S +K+ + L
Sbjct: 6 PYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD 545
+ D G YT +NS G +A + + ++ P ++ +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVI----------KERKLPPSFARKLKDVHET 114
Query: 546 TGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
G + + W + +D + + + I +S QY
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 588 TATNSQGKDQVFIEVVVTDKPSAP---EGPIQWL------LTLT---------DVTWEIS 629
+A+N G ++ +++ P P+ T +TW
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW--- 231
Query: 630 NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
+ +++ + + V+ +T+ + + D QYT A+N GK
Sbjct: 232 -------------AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 690 DQVFIEVVVTDKPS 703
D ++ V + P
Sbjct: 279 DSCSAQLGVQEPPR 292
Score = 81.4 bits (201), Expect = 3e-16
Identities = 73/382 (19%), Positives = 124/382 (32%), Gaps = 72/382 (18%)
Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+ N+ G K+ ++ L V + DAG YT A N+ GKDS ++ V + P
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 224 SPPGGPLKVSNVHAEG--VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE------ 275
V + + K+ GG P K W
Sbjct: 292 RFIKKLEPSRIV-KQDEHTRYECKI----GGSPEIKV----------LWYKDETEIQESS 336
Query: 276 -----TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE-------AKNPFN 323
V LE+ L + A N G + +++ S++ K P
Sbjct: 337 KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA---SSSTSLKVKEPPVFRKKPHP 393
Query: 324 QPGKPGTP-EIKDFDTDFVELAWTPPEQNGGSPIV-----GYIIEKKEKYSPIWEKCAQT 377
G ++ EL TPP V + +KY + +
Sbjct: 394 VETLKGADVHLE------CELQGTPP------FQVSWHKDKRELRSGKKYKIM------S 435
Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDI 436
E +L++ + E++ A N G + + K P +LSDI
Sbjct: 436 ENFLTSIHILNVDSADIGEYQCKASNDVG-------SDTCVGSITLKAPPRF-VKKLSDI 487
Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDSG 495
G + + G + W + I+ D I + L+ ++ ++G
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAG 547
Query: 496 IYTLAVKNSWGTDKGTAKVTVL 517
YT +KN GT + A ++VL
Sbjct: 548 KYTCQIKNEAGTQECFATLSVL 569
Score = 66.0 bits (161), Expect = 2e-11
Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W + + + + + I + SD +YT A NS G +V+
Sbjct: 37 IAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK 96
Query: 606 DKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPI---SLESQYLMNDKRVTIDNVD 661
++ P L T + ++ S + + L +D + +
Sbjct: 97 ERKLPPS--FARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIH 154
Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
+ I +S QY +A+N G ++ +++ P
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
Score = 40.2 bits (94), Expect = 0.002
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+ + + L A+ A+AG YT +N G + VL+
Sbjct: 525 IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 39.0 bits (91), Expect = 0.006
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ + L + ++ G Y +A N G S ++ + + PP
Sbjct: 148 LQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPP 198
Score = 37.9 bits (88), Expect = 0.012
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
K+Q + L + +D G YT AEN G + +++ ++ PP
Sbjct: 53 KMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPP 102
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 112 bits (281), Expect = 1e-29
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
S + P P ++D L W PP++ G I GY++E + S W
Sbjct: 1 GSSGSSGP---TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVP 57
Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
+ + V DL G + FRV+ VN G EP+ P R S
Sbjct: 58 ANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 106 bits (266), Expect = 1e-27
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
S P V +V TL W+ PD G I+ Y+V+ E + W PA + G
Sbjct: 9 TSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
V+ L + FRV VN G+SEP T + + G
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSSG 111
Score = 94.3 bits (235), Expect = 2e-23
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMD 113
L V ++ TLKW P G ++GYLVE + W+P K
Sbjct: 10 SAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFT 69
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
V L G FRV +N G SEP + R+
Sbjct: 70 VKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES 106
Score = 54.7 bits (132), Expect = 2e-09
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+LKW PP+ G I+ Y+VE + +W+ N + V T++ L
Sbjct: 25 TTLKWRPPDRIGAGGIDGYLVEYCLEGSE----EWVPANKEPVER------CGFTVKDLP 74
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+ V N G +P+ P+
Sbjct: 75 TGARILFRVVGVNIAG----------RSEPATLLQPVT 102
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 123 bits (311), Expect = 2e-29
Identities = 95/586 (16%), Positives = 171/586 (29%), Gaps = 113/586 (19%)
Query: 169 PCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
+V + + L ++ A D+G Y N G +SVE + V S
Sbjct: 290 TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID 349
Query: 229 PLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG-LEVEG 287
P + + G PI+ W G+ G L +E
Sbjct: 350 PPTQTVDFGRPAVFTCQYT----GNPIKTV----------SWMKDGKAIGHSESVLRIES 395
Query: 288 LIPNHKYKFRVRAVNKQGKSEPLTTTASIE----------AKNPFNQPGKPGTPEIKDFD 337
+ K ++ N + +E +A ++ + + +PG
Sbjct: 396 VKKEDKGMYQCFVRNDRESAE---ASAELKLGGRFDPPVIRQAFQEETMEPGPS------ 446
Query: 338 TDFVELAWTPPEQNGGSPIV-------GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI 390
V L G+P G I ++Y + + + +
Sbjct: 447 ---VFLKCVAG----GNPTPEISWELDGKKIANNDRYQ-VGQYVTVNGDVVSYLNITSVH 498
Query: 391 EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDIN 449
+ ++ +A +K G A H A+ PYI Q+ + AG
Sbjct: 499 ANDGGLYKCIAKSKVG-------VAEHSAKLNVYGLPYI--RQMEKKAIVAGETLIVTCP 549
Query: 450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWG-T 507
V G PI + W ++ + + K+ + L + + + D YT KN G +
Sbjct: 550 VAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQEGYS 606
Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TGK---VLIKWIR---- 555
+G+ +V V+ P A E G + I W
Sbjct: 607 ARGSLEVQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA 660
Query: 556 -TNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 613
+ D +T V +TI ++ S +T A N G Q + V P
Sbjct: 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE 720
Query: 614 PIQWL------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID 658
P + VTW+ + E + L + ++
Sbjct: 721 PTDKAFAQGSDAKVECKADGFPKPQVTWKKAV---------GDTPGEYKDLKKSDNIRVE 771
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPS 703
+ + +Q+++ Y A N G I + V
Sbjct: 772 EGT----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHH 813
Score = 115 bits (288), Expect = 1e-26
Identities = 75/571 (13%), Positives = 156/571 (27%), Gaps = 98/571 (17%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP-----PGGPLKVSNVHAEGVT 241
+ + + + A G ++ D+ P P + SN + G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSN--STGAE 58
Query: 242 LDWKVPDD---------DGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
++ K + G + + + G+
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ----- 113
Query: 293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG 352
+ A N+ G ++ + A + ++ + P
Sbjct: 114 --VYACLARNQFGSI--ISRDVHVRAVVAQYYEADVNKEHVIRGNS--AVIKCLIPSFVA 167
Query: 353 G-SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGN-----------QYEFRVL 400
+V + +++E Y P G GK L L G ++
Sbjct: 168 DFVEVVSWHTDEEENYFP---------GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCR 218
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
++ T + + +S ++ + S G P+P
Sbjct: 219 TKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP 278
Query: 457 TKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
W K + + S L + D+ DSG Y V NS G + +
Sbjct: 279 VFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Query: 515 TVLGCSLKW-NPPEDDGGAPIEYYMVEKMETDTGKVL-------------IKWIRTNDKR 560
TV L P D G+ + W++ + K
Sbjct: 339 TVTA-PLSAKIDPPT-------------QTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKA 383
Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLT 620
+ + + I +++ D Y N + + E+ + + P I+
Sbjct: 384 IGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV--IRQAFQ 437
Query: 621 LTDVTWEISNYLQ-ELHSSLMPI---SLESQYLMNDKRVTI-----DNVDYFTKITIRPL 671
+ S +L+ + P L+ + + N+ R + N D + + I +
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497
Query: 672 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+D Y A + G + ++ V P
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLP 528
Score = 103 bits (259), Expect = 5e-23
Identities = 95/607 (15%), Positives = 168/607 (27%), Gaps = 120/607 (19%)
Query: 161 DSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIV 219
R G + + DY Q A Y A N G S +V V
Sbjct: 84 VPGLRQISSDGKLVFPPFRAEDYR--------QEVHAQVYACLARNQFGSIISRDVHVRA 135
Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI-------EKYVVDKMDEATGRWT- 271
+ K + + +P E+ E G++
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195
Query: 272 -PAGETEGPVTGLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG 329
P+GE L + + P Y ++ R ++ L+ T P
Sbjct: 196 LPSGE-------LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPK 248
Query: 330 TPEIKDFDTDFVELAWTPPEQN-------GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
+ FD G P+ + K + + + +
Sbjct: 249 VVSLAKFDMKTYS-----GSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQ 303
Query: 383 KGKVLDLI---EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKV 438
L + + ++ + N G + V
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVG-------GESVETVLTVTAPLSA-KIDPPTQTV 355
Query: 439 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
G F G PI T W+ + I + L++ K+ D G+Y
Sbjct: 356 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQ 405
Query: 499 LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TG--KVLI 551
V+N + + +A++ + G +++PP E M G I
Sbjct: 406 CFVRNDRESAEASAELKLGG---RFDPPVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEI 461
Query: 552 KWIR-----TNDKRVTI-----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
W N+ R + N D + + I + +D Y A + G + +
Sbjct: 462 SWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK 521
Query: 602 VVVTDKP--------SAPEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISL 644
+ V P + G L +T + WE N + L +
Sbjct: 522 LNVYGLPYIRQMEKKAIVAG---ETLIVTCPVAGYPIDSIVWERDN--RALPIN------ 570
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS 703
Q + + + I+NV+ + SD A YT A N +G + +EV V P
Sbjct: 571 RKQKVFPNGTLIIENVE----------RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPR 620
Query: 704 APEGPIQ 710
+
Sbjct: 621 IIPFAFE 627
Score = 99.2 bits (247), Expect = 1e-21
Identities = 62/318 (19%), Positives = 107/318 (33%), Gaps = 61/318 (19%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VNDDK 480
P I + + + G + G P P W + I + DR+++ VN D
Sbjct: 430 PVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
+ L + D G+Y K+ G + +AK+ V G P +
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG------LPY-----------IR 531
Query: 541 KMETDT---GKVL-------------IKWIRTNDKRVTIDNVDYFTK---ITIRPLQR-S 580
+ME G+ L I W R +++ + I+ + I ++R S
Sbjct: 532 QMEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNGTLIIENVERNS 590
Query: 581 DTAQYTVTATNSQGKD-QVFIEVVVTDKPSAPEGPIQWLLTL----TDVTWEISNYLQEL 635
D A YT A N +G + +EV V P + + +
Sbjct: 591 DQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP------ 644
Query: 636 HSSLMPISL----ESQYLMNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKD 690
+P+++ + Q + D +T V +TI ++ S +T A N G
Sbjct: 645 -GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ 703
Query: 691 QVFIEVVVTDKPSAPEGP 708
Q + V P P
Sbjct: 704 QFTTPLNVYVPPRWILEP 721
Score = 78.1 bits (192), Expect = 5e-15
Identities = 52/359 (14%), Positives = 96/359 (26%), Gaps = 69/359 (19%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 456
F +A+ G S A + A + P ++ + I + E + G P+P
Sbjct: 14 FAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP 69
Query: 457 TKEWLCNDITIISKDRFKIVNDDKST----KLKVFDS-KRGDSGIYTLAVKNSWGTD--- 508
W+ +D T + + D + + +Y +N +G+
Sbjct: 70 EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Query: 509 -------------KGTAKVTVL-GCS--LKWNPPEDDGGAPIEYY-MVEKMETDTGKVLI 551
K V+ G S +K P + +
Sbjct: 130 DVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD------EEENY 183
Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQV---FIEVVVTDK 607
D + + ++ IR + D Y + + +V +
Sbjct: 184 FPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITE 240
Query: 608 PSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE-----------------SQYLM 650
P + P V+ + SS ++L
Sbjct: 241 PISSAVP-------KVVSLAKFDMKTYSGSS--TMALLCPAQGYPVPVFRWYKFIEGTTR 291
Query: 651 NDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
V D V + I+ D+ +Y NS G + V + VT SA P
Sbjct: 292 KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 350
Score = 40.3 bits (94), Expect = 0.002
Identities = 32/264 (12%), Positives = 70/264 (26%), Gaps = 50/264 (18%)
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP-IEYYMVEKM 542
+ + + + ++ + G+ +L NPP+ D P ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ-----------TLAANPPDADQKGPVFLKEPTNRI 49
Query: 543 ETDTG-------------KVLIKWIRTNDKRVTIDNVDYFT----KITIRPLQRSDTAQ- 584
+ I WIR++ V K+ P + D Q
Sbjct: 50 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQE 109
Query: 585 -----YTVTATNSQGKDQ---VFIEVVVTDKPSAPEGPIQ----WLLTLT-DVTWEISNY 631
Y A N G V + VV A + + ++++
Sbjct: 110 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 169
Query: 632 LQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKD 690
++ + D + + ++ IR + D Y + +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 691 QV---FIEVVVTDKPSAPEGPIQI 711
+V +P + P +
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVV 250
Score = 36.8 bits (85), Expect = 0.023
Identities = 25/180 (13%), Positives = 40/180 (22%), Gaps = 41/180 (22%)
Query: 72 TLKWNKPKDDGGE--PLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKA 129
+ W DG G + V + + H F A
Sbjct: 651 NIDWTL---DGQAISEDLGITTSRVGRRGSVLT-----------IEAVEASHAGNFTCHA 696
Query: 130 LNKEGESE---PLE-TFSSIIARDPYSKYTSVSS-------------------LDSHKRS 166
N G + PL +P K + S
Sbjct: 697 RNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756
Query: 167 NQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ ++ L V Q+ + G+Y A N G V +I +
Sbjct: 757 GEYKDLKKSDNIRV--EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 110 bits (278), Expect = 4e-29
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
+ + PG P + V L W PE GG I YI+EK++ + W K +
Sbjct: 4 HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63
Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIAR 420
+ V L E YEFRV+A N G PS+P+ R
Sbjct: 64 NILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 101 bits (253), Expect = 8e-26
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
PPG P N+ VTL W P+ GG I Y+V+K D GRW A +
Sbjct: 11 IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGK-SEPLTTTASIEAKNPF 322
V GL + Y+FRV A N G S P + +I ++
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 93.9 bits (234), Expect = 4e-23
Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEMD 113
DP G NI + TLKW KP+ GG + Y+VEK D G W+ + E E
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 114 VTGLTPGHEYKFRVKALNKEGE-SEPLETFSSIIARDPY 151
V+GLT Y+FRV A N G S P E +I RD
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110
Score = 56.6 bits (137), Expect = 4e-10
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+LKW PE GG I Y+VEK + G +W++ N + + T+ L
Sbjct: 27 VTLKWAKPEYTGGFKITSYIVEKRDLPNG----RWLKANFSNILE------NEFTVSGLT 76
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
++ V A N+ G PS P I
Sbjct: 77 EDAAYEFRVIAKNAAGAIS---------PPSEPSDAIT 105
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 110 bits (277), Expect = 6e-29
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 209 GKDSVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
G + V P P P +S V + L W P D G P+ +Y+++ +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNA 62
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ T + V+GL+P Y+FR+ AVN GK + T +
Sbjct: 63 PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLP 114
Score = 102 bits (257), Expect = 3e-26
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTP--EIKDFDTDFVELAWTPPEQNGGSPIVGYIIE 362
G S +A + + P P P + + + L WT P +G SP++ YI+E
Sbjct: 1 GSSGSSGRSAHLRVRQL---PHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILE 56
Query: 363 KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
E +P A + V L+ Y+FR+ AVN G G+ S T
Sbjct: 57 MSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
Score = 80.9 bits (200), Expect = 2e-18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 57 PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REPEMD 113
PE P +S + + L W KP DG PL Y++E + + + + +
Sbjct: 21 PEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVT 79
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
V GL P Y+FR+ A+N G+ + +
Sbjct: 80 VKGLVPARSYQFRLCAVNDVGKGQFSKD 107
Score = 42.7 bits (101), Expect = 4e-05
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 31/126 (24%)
Query: 506 GTDKGTAKVTVLG-------------------CSLKWNPPEDDGGAPIEYYMVEKMETDT 546
G+ +A + V +L W P DG +P+ Y++E E +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNA 62
Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV-VVT 605
+ T +T++ L + + Q+ + A N GK Q + V+
Sbjct: 63 P----WTVLLASVDPK------ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 606 DKPSAP 611
S P
Sbjct: 113 LPESGP 118
Score = 31.2 bits (71), Expect = 0.39
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT 625
S G + V P APE P+ TL+ V
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPV---ATLSTVE 32
Score = 28.5 bits (64), Expect = 3.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 686 SQGKDQVFIEVVVTDKPSAPEGPI 709
S G + V P APE P+
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPV 25
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 111 bits (279), Expect = 3e-28
Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 19/204 (9%)
Query: 224 SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
P + + + W P I KY++ + + G +
Sbjct: 2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58
Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSEPL------------TTTASIEAKNPFNQPGKPGTP 331
++GL P Y+ ++ ++ + G E T+ ++ + P +
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 332 EIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIE 391
+ + ++W + G+ +E + + + DL+
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174
Query: 392 GNQYEFRVLAVNKGGPGEPSDPTA 415
G +Y V +++ G T+
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTS 198
Score = 67.8 bits (165), Expect = 5e-13
Identities = 30/263 (11%), Positives = 72/263 (27%), Gaps = 73/263 (27%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTREPE 111
E + + + ++WN P+ + Y++ + IP
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNS--- 57
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCG 171
+ GL PG Y+ ++ ++ + G E + + +V+ +
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVA-- 115
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLK 231
+ + I S V +
Sbjct: 116 ----------------------------TSESVTEIT-ASSFVVSW------VSASDTV- 139
Query: 232 VSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPN 291
G ++++ ++G +P + P+ T + L P
Sbjct: 140 ------SGFRVEYE-LSEEGDEPQYLDL------------PSTATSVNIPDLL-----PG 175
Query: 292 HKYKFRVRAVNKQGKSEPLTTTA 314
KY V +++ G+ + +T+
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTS 198
Score = 62.0 bits (150), Expect = 4e-11
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 3/120 (2%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
+ + W P+ S I YI+ + K S K A G +
Sbjct: 5 EVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIK 61
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 447
L G YE +++++ + G E + + + V+ + + ++
Sbjct: 62 GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVT 121
Score = 35.4 bits (81), Expect = 0.038
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 15/96 (15%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETD-TGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
++WN P+ + I Y++ + G+ I + TI + +
Sbjct: 19 PIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQ--- 72
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ + G +V T S P
Sbjct: 73 --------LISIQQYGHQEVTRFDFTTTSTSTPVTS 100
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 108 bits (272), Expect = 3e-28
Identities = 23/109 (21%), Positives = 40/109 (36%)
Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
+ + P + V + W PP+ G + + GY++E + + W +
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
D K + L + RV AVN G EP + P + + S
Sbjct: 61 LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
Score = 104 bits (261), Expect = 7e-27
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
SPP V +V VT+ W+ PD G ++ YV++ E T W A + T
Sbjct: 8 TSPPTLL-TVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
+ GL + K RV+AVN G SEP + I K G
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 97.4 bits (243), Expect = 2e-24
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMD 113
P L V ++ T++W P G L+GY++E T WI K + +
Sbjct: 9 SPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFT 68
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
+TGL + RVKA+N G SEP I+ ++
Sbjct: 69 ITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105
Score = 55.4 bits (134), Expect = 9e-10
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+++W PP+ G A ++ Y++E T WI N + TK TI L
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTE----DWIVANKDLIDK------TKFTITGLP 73
Query: 579 RSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEG 613
V A N+ G + + + ++ + G
Sbjct: 74 TDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 112 bits (283), Expect = 7e-28
Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 52/303 (17%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
P+ + + + G + F +V G W ++ I +K+ + +
Sbjct: 4 APPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
L V +GD+G YT N G D +A++ V PP + +
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE------PPRFIKKLEPSRIVKQDEH 116
Query: 544 TD-----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 591
T G ++ + W + + + V+ + + L D+ YT A N
Sbjct: 117 TRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Query: 592 SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE------ 645
+ G + V + P + V + LE
Sbjct: 177 AAGSASSSTSLKVKEPP-------VFRKKPHPVETLKG----------ADVHLECELQGT 219
Query: 646 ----------SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
+ L + K+ I + ++ T I I + +D +Y A+N G
Sbjct: 220 PPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279
Query: 696 VVV 698
+ +
Sbjct: 280 ITL 282
Score = 85.2 bits (211), Expect = 2e-18
Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 31/200 (15%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+ P + V+ + ++ + G P W ++ I +F++ +
Sbjct: 96 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L++++ DSG YT N+ G+ + + V P+ +
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-------------EPPVFRKKPHPV 202
Query: 543 ETDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQ 584
ET G + + W + + K+ I + ++ T I I + +D +
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 262
Query: 585 YTVTATNSQGKDQVFIEVVV 604
Y A+N G + +
Sbjct: 263 YQCKASNDVGSYTCVGSITL 282
Score = 71.7 bits (176), Expect = 6e-14
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
K P + + ++ G++ + + G P W + + S ++KI++++ T
Sbjct: 190 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+ + + D G Y N G+ +T+
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 63.6 bits (155), Expect = 3e-11
Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 19/165 (11%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W + + V+ +T+ + + D QYT A+N GKD ++ V
Sbjct: 37 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Query: 606 DKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM--PI-----SLESQYLMNDKRVTID 658
+ P +++ L + + P + + + +
Sbjct: 97 EPP-------RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
V+ + + L D+ YT A N+ G + V + P
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 194
Score = 44.7 bits (106), Expect = 5e-05
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+ N+ G K+ ++ L V + DAG YT A N+ GKDS ++ V + P
Sbjct: 40 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 99
Query: 224 S 224
Sbjct: 100 R 100
Score = 42.0 bits (99), Expect = 4e-04
Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 29/146 (19%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------P 225
++ ++ L + D+G YT A N G S + V + P
Sbjct: 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205
Query: 226 PGGPLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
G + + +G + W + + + ++ +E +T
Sbjct: 206 KGADVHLE-CELQGTPPFQVSWHK----DKREL---------RSGKKYKI--MSENFLTS 249
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSE 308
+ + + +++ +A N G
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYT 275
Score = 36.6 bits (85), Expect = 0.020
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
K+ ++ T + + AD G Y A N G + + +
Sbjct: 240 KIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 106 bits (267), Expect = 1e-27
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P +P + ++ L W+ P + YI+E +E+ S K G+
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-GEDLAY 66
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
V +L +Y+F+V+A N G PS+ S
Sbjct: 67 TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 94.7 bits (236), Expect = 1e-23
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
PS P P ++ ++L W P Y+++ +E +G + +G
Sbjct: 4 GSSGPSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKP-KYDG 61
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPG 329
V+ L + KYKF+V A N +GKS P + G
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS---GPSSG 109
Score = 91.2 bits (227), Expect = 3e-22
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT-REPEMDV 114
++ +L+W+KP + Y++E + +G + V
Sbjct: 9 SMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTV 68
Query: 115 TGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
L +YKF+V A N EG+S P E D
Sbjct: 69 KNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDS 104
Score = 48.5 bits (116), Expect = 3e-07
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
SL+W+ P Y++E E +G + T++ L+
Sbjct: 24 LSLQWSKPSGTPSDEGISYILEMEEETSG----YGFKPKYDGED-------LAYTVKNLR 72
Query: 579 RSDTAQYTVTATNSQGK 595
RS ++ V A NS+GK
Sbjct: 73 RSTKYKFKVIAYNSEGK 89
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 109 bits (273), Expect = 2e-27
Identities = 32/203 (15%), Positives = 56/203 (27%), Gaps = 15/203 (7%)
Query: 213 VEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTP 272
+ ++ P P L ++ + L W I Y + + G
Sbjct: 14 LVPRGSHMEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68
Query: 273 AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPE 332
+ V V GL P Y V V G+S P T T P
Sbjct: 69 EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTA-------VPPPTDLR 121
Query: 333 IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG 392
+ D + + W PP + +++ + + +L+ G
Sbjct: 122 FTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPG 178
Query: 393 NQYEFRVLAVNKGGPGEPSDPTA 415
+Y V +V + P
Sbjct: 179 TEYVVSVSSVYEQHESTPLRGRQ 201
Score = 72.2 bits (177), Expect = 2e-14
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
+V G +S + PP L+ +N+ + + + W P + ++V
Sbjct: 93 SVYTVKNGG-ESTPTTLTQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLV 147
Query: 261 DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ + L+P +Y V +V +Q +S PL
Sbjct: 148 RYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 202
Score = 71.4 bits (175), Expect = 3e-14
Identities = 25/116 (21%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
+ + S L S +P D + L WTP S I+GY
Sbjct: 4 SHHHHHHSSGLVPRGSHME------VPQPTDLSFVDITDSSIGLRWTPLN---SSTIIGY 54
Query: 360 IIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
I I + V L G Y+ V V GG P+ T
Sbjct: 55 RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110
Score = 58.3 bits (141), Expect = 7e-10
Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 48 LVEKDRGLDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG 105
LV + ++ P L +I L+W + GY + G+ I
Sbjct: 14 LVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFED 70
Query: 106 K--TREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ VTGL PG +Y V + GES P
Sbjct: 71 FVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL 108
Score = 53.3 bits (128), Expect = 3e-08
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
+ P L +NI D + W P L +LV Y P + P
Sbjct: 114 VPPPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVR-YSPVKNEEDVAELSISPSDNA 169
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ +T L PG EY V ++ ++ ES PL
Sbjct: 170 VVLTNLLPGTEYVVSVSSVYEQHESTPLRG 199
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 106 bits (266), Expect = 2e-27
Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP-I 370
++ S + P P P I V + W P NGG PI + +E K+
Sbjct: 5 SSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGD 63
Query: 371 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
W ++ L +G Y+FRV A+N G EPS P+ P++
Sbjct: 64 WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 98.2 bits (245), Expect = 2e-24
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEAT 267
G + + L P P P +S V + W P +GG PI+ + V+ K +
Sbjct: 4 GSSGSQPDHGRLSPPEAPDRP-TISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKV 61
Query: 268 GRWTPAGE-TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
G W A +E+ GL YKFRVRA+N G+SEP +
Sbjct: 62 GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 83.6 bits (207), Expect = 2e-19
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-ETGVWIPVGKT---REPE 111
+ +S + + W P+ +GG P++ + VE + G WI
Sbjct: 19 EAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 77
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
+++TGL G YKFRV+ALN GESEP +
Sbjct: 78 VEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 38.5 bits (90), Expect = 0.001
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+ W P +GG PI+ + VE + WI + + I L+
Sbjct: 34 VYVTWIPR-GNGGFPIQSFRVEYKKLKKVG---DWILATS-AIPPSR----LSVEITGLE 84
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+ + ++ V A N G +PSAP P
Sbjct: 85 KGISYKFRVRALNMLG----------ESEPSAPSRPYV 112
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 106 bits (267), Expect = 1e-26
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 19/194 (9%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
P L+VS+ ++L W+ P ++Y + + E T
Sbjct: 6 DLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVS--PSGKKNEMEIPVDST 58
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
+ GL +Y + A + KS+P T S G P D +
Sbjct: 59 SFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV-------VGSPKGISFSDITENSA 111
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA 401
++WTPP S + Y + +G + K++ L+ G Y +++
Sbjct: 112 TVSWTPPR----SRVDSYRVSYVPITGG-TPNVVTVDGSKTRTKLVKLVPGVDYNVNIIS 166
Query: 402 VNKGGPGEPSDPTA 415
V EP
Sbjct: 167 VKGFEESEPISGIL 180
Score = 67.1 bits (164), Expect = 5e-13
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
++ AE K S + P G + S++ T+ W P ++ Y
Sbjct: 73 ISLVAEKGRHK-SKPTTIKGSTVVGSPKG-ISFSDITENSATVSWTPPRS----RVDSYR 126
Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
V + TG +G T ++ L+P Y + +V +SEP++
Sbjct: 127 VSYVP-ITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGIL 180
Score = 64.8 bits (158), Expect = 3e-12
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 56 DPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
D + P LEVS+ + +L+W +P + Y + P
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNEMEIPVDSTSFI 61
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
+ GL G EY + A +S+P
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTTI 89
Score = 57.8 bits (140), Expect = 7e-10
Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 62/184 (33%)
Query: 10 TKPAKPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKD----------------- 52
T P+ LEVS+ + +L+W +P + Y +
Sbjct: 5 TDLDNPKD-LEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNEMEIPVDSTS 59
Query: 53 ---RGLDPE------------------------------GPLEVSNIHKDGCTLKWNKPK 79
RGLD + S+I ++ T+ W P+
Sbjct: 60 FILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR 119
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPVGK--TREPEMDVTGLTPGHEYKFRVKALNKEGESE 137
++ Y V Y P TG V + + L PG +Y + ++ ESE
Sbjct: 120 S----RVDSYRVS-YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE 174
Query: 138 PLET 141
P+
Sbjct: 175 PISG 178
Score = 54.8 bits (132), Expect = 1e-08
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P E+ D + L W P + Y + E + D+
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM--EIPVDSTSF 60
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ L G +Y ++A +P+
Sbjct: 61 ILRGLDAGTEYTISLVAEKGRHKSKPTTIKGS 92
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 114 bits (286), Expect = 2e-26
Identities = 72/621 (11%), Positives = 150/621 (24%), Gaps = 120/621 (19%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSN 234
V + + L + D G Y + + V V P +
Sbjct: 76 VTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135
Query: 235 VHA-----EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--TEGPVTGLEVEG 287
V+ + V + + + + E R+ P G + G +
Sbjct: 136 VYITENKNKTVVIPCLGSIS----NLNVSLCARYPE--KRFVPDGNRISWDSKKGFTIPS 189
Query: 288 LIPNHKYKFRVRAVNKQGKSE---PLTTTASIEAKNPFNQPGKP-----GTP-----EIK 334
+ ++ A + + + P G +
Sbjct: 190 YMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI---- 390
++ W P K + + G K + L
Sbjct: 250 TELNVGIDFNWEYPSS------------KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 297
Query: 391 ----EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEF 446
+G + A + + + + +K S ++ G
Sbjct: 298 TRSDQG---LYTCAASSGLM----TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 447 DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 506
+G P P +W N I + S K L + + D+G YT+ + N
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESNHTIKA-----GHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 507 TDKGTAKVTV---------------------------LGCSLKWNPPED------DGGAP 533
+K + V++ L C++ PP
Sbjct: 406 KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEE 465
Query: 534 IEYYMVEKMETDTGKVLIKW-----------IRTNDKRVTIDNVDYFTKITIRPLQRSDT 582
+ + +W I N + + T T+ + +
Sbjct: 466 CANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVS 525
Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL-----LTLT---------DVTWEI 628
A Y A N G+ + I VT P P ++L ++TW
Sbjct: 526 ALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYK 585
Query: 629 SNY----LQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
+ + + ++ + + ++ D Y A
Sbjct: 586 LGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQ 645
Query: 685 NSQGKDQVFIEVVVTDKPSAP 705
+ + K + + +T
Sbjct: 646 DRKTKKRHCVVRQLTVLERVA 666
Score = 92.5 bits (229), Expect = 2e-19
Identities = 80/620 (12%), Positives = 160/620 (25%), Gaps = 130/620 (20%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP------------- 226
D + + AG A+ + + ++V+
Sbjct: 178 SWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237
Query: 227 -GGPL----KVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
G L G+ +W+ P K+ K+ + E + ++
Sbjct: 238 VGEKLVLNCTARTELNVGIDFNWEYPS-------SKHQHKKLVNRDLKTQSGSEMKKFLS 290
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
L ++G+ + + + A + + T E G E + V
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER--V 348
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT---PKGKVLDLIEGNQYEFR 398
+ G P K P+ G + D GN Y
Sbjct: 349 RIPAKYL----GYPPPEIKWYKNGI--PLESNHTIKAGHVLTIMEVSERD--TGN-YTVI 399
Query: 399 VLAVNKGGPGEPSDP------TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 452
N + S P I +SP + + G+ V
Sbjct: 400 --LTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS--------YQYGTTQTLTCTVYA 449
Query: 453 EPIPTK-EWLCNDITI---------------------------------ISKDRFKIVND 478
P P W ++K++F ++
Sbjct: 450 IPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEG 509
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV---------------------L 517
T + S +Y N G + V L
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSL 569
Query: 518 GCSLKWNPPED-----DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
C+ + E+ G P+ ++ E + W + + ++ + +
Sbjct: 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLW--KLNATMFSNSTNDILIM 627
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL 632
++ D Y A + + K + + +T P L + T I +
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA--P-TITGNLENQTTSIGESI 684
Query: 633 QELH---SSLMPISLE----SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685
E+ S P + ++ L+ D + + D +TIR +++ D YT A +
Sbjct: 685 -EVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQACS 741
Query: 686 SQGKDQVFIEVVVTDKPSAP 705
G +V ++
Sbjct: 742 VLGCAKVEAFFIIEGAQEKT 761
Score = 91.7 bits (227), Expect = 3e-19
Identities = 50/350 (14%), Positives = 89/350 (25%), Gaps = 65/350 (18%)
Query: 397 FRVLAVNKGGPGEPS-DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
+ + G PS P + Q + ++A + + G+
Sbjct: 12 WLCVETRAASVGLPSVSLDLPRL-----------SIQKDILTIKANTTLQI--TCRGQRD 58
Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
W N + +D K L + D+G Y + + V
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 515 TVLGCSLKWNPPEDDGGAPIEYYMVEKME--------TDTGKVLIKWIRTNDKRVTIDNV 566
S D + Y K + + + + R +KR D
Sbjct: 119 QDYR-SPFIASVSDQ--HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175
Query: 567 DYFT----KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL---- 618
TI S A + Q + +VV + +
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 619 ------LTLT---------DVTW-----EISNYLQELHSSLMPISLESQYLMNDKRVTID 658
L L + + + ++L + + S+ +TID
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 295
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
V RSD YT A++ + V V +KP G
Sbjct: 296 GV-----------TRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 334
Score = 89.8 bits (222), Expect = 1e-18
Identities = 79/578 (13%), Positives = 139/578 (24%), Gaps = 105/578 (18%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKP--SPPGGPLKVSNVHAEGVTLDWKVPDDDGGQ 253
+ V LD P S L + TL GQ
Sbjct: 8 AVALWLCVETRAASVGLPSVS---LDLPRLSIQKDILTIK----ANTTLQITCR----GQ 56
Query: 254 P---IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
E T + T L + +I N ++ S
Sbjct: 57 RDLDWLWPNNQSGSEQRVEVTECSDGLFCKT-LTIPKVIGNDTGAYKCFYRETDLASVIY 115
Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
+ + + G I + V + S + + +
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGS----ISNLNVSLCARYP--EKR 169
Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
+ K I A + S + +
Sbjct: 170 FVPDGNRISWDSKKGFT--IPSYMISYAGMVFCEAKINDESYQ-SIMYIVVVVGYR--IY 224
Query: 427 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW------LCNDITIISKDRFKIVNDDK 480
+ I++ G + E ++ + + K + +
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 481 STK----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
K L + R D G+YT A + T K + V V +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV----------HEKPFVAFGS 334
Query: 537 YMVEKMETDTGKVL-------------IKWIRTNDKRVTID-NVDYFTKITIRPLQRSDT 582
M +E G+ + IKW + N + + + +TI + DT
Sbjct: 335 GMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDT 393
Query: 583 AQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGP-------------------------- 614
YTV TN K++ + +VV P E
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 615 --IQWL--------LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFT 664
I W + + Y E S+ ++ +N + + T
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 665 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
T+ + +A Y A N G+ + I VT P
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551
Score = 82.5 bits (203), Expect = 2e-16
Identities = 59/391 (15%), Positives = 106/391 (27%), Gaps = 60/391 (15%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLDKPS-PPGGPLKVSNV 235
+ L + D G YTV N K+ S V ++V P + +
Sbjct: 375 HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDS 434
Query: 236 HAEG--VTLD-------------WKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET---- 276
+ G TL W ++ V + + E
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494
Query: 277 --------------EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPF 322
T + N ++ AVNK G+ E + +
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER-VISFHVTRGPEI 553
Query: 323 NQPGKPGTPEIKDFD-------TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCA 375
E + + F L W VG + K K
Sbjct: 554 TLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLN 613
Query: 376 QTEGDTPKGKVLDLI--------EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
T +L + +G Y A ++ + ++V+P
Sbjct: 614 ATMFSNSTNDILIMELKNASLQDQG-DYVCL--AQDRKTKKRHC--VVRQLTVLERVAPT 668
Query: 428 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
I L + G + E G P P W ++ T++ + + +++ L +
Sbjct: 669 ITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIR 725
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
++ D G+YT + G K A + G
Sbjct: 726 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 78.3 bits (192), Expect = 4e-15
Identities = 47/345 (13%), Positives = 95/345 (27%), Gaps = 45/345 (13%)
Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
++ R+ ++ ++ + I +
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNL 157
Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
D +I D K + +G+ K + + + +
Sbjct: 158 NVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216
Query: 516 V--------------------------LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
V L C+ + I++ K
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV-----GIDFNWEYPSSKHQHKK 271
Query: 550 LIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
L+ R + + + + +TI + RSD YT A++ + V V +KP
Sbjct: 272 LVN--RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF 329
Query: 610 APEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTID-NVDYFTKIT 667
G +L + T + + P E ++ N + + + +T
Sbjct: 330 VAFGSGM--ESLVEATVGERVRIPAKYLGYPPP---EIKWYKNGIPLESNHTIKAGHVLT 384
Query: 668 IRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGPIQ 710
I + DT YTV TN K++ + +VV P E +
Sbjct: 385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429
Score = 69.0 bits (168), Expect = 3e-12
Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 46/239 (19%)
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDGGAP 533
++ + + + + + C G
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCR---------GQRD 58
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
+++ + + + +TI + +DT Y +
Sbjct: 59 LDWL---WPNNQ------SGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETD 109
Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISL-----ESQ 647
+++ V P Q + + + S + +SL E +
Sbjct: 110 LASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKR 169
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
++ + R++ D+ TI S A + Q + +VV +
Sbjct: 170 FVPDGNRISWDSK---KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225
Score = 46.3 bits (109), Expect = 3e-05
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ D N L +R ++ D G YT A ++ G VE I+
Sbjct: 711 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 45.9 bits (108), Expect = 5e-05
Identities = 15/149 (10%), Positives = 36/149 (24%), Gaps = 27/149 (18%)
Query: 574 IRPLQRSDTAQYTVTATNSQGKDQVFIEV---VVTDKPS---APEGPIQWLLTLT----- 622
++ A + T + + + ++ + L +T
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTT---LQITCRGQR 57
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
D+ W N + + + +TI + +DT Y
Sbjct: 58 DLDWLWPNNQSGSEQ-------------RVEVTECSDGLFCKTLTIPKVIGNDTGAYKCF 104
Query: 683 ATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
+ +++ V P Q
Sbjct: 105 YRETDLASVIYVYVQDYRSPFIASVSDQH 133
Score = 43.2 bits (101), Expect = 3e-04
Identities = 20/194 (10%), Positives = 49/194 (25%), Gaps = 18/194 (9%)
Query: 132 KEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM 191
+ E E S ++ S++ + N+ + + T + +
Sbjct: 460 WQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVI 519
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPS---------PPGGPLKVSNVHAEGV-- 240
+ Y A N G+ + V P + + A+
Sbjct: 520 QAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLW-CTADRSTF 578
Query: 241 -TLDWKVPD-----DDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY 294
L W G+ + T + + +E++ +
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 295 KFRVRAVNKQGKSE 308
+ A +++ K
Sbjct: 639 DYVCLAQDRKTKKR 652
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 103 bits (258), Expect = 3e-26
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
G S + +I + P PG P I + V L + P +G + I +++E +
Sbjct: 1 GSSGS---SGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQ 56
Query: 365 EKYSPIWEKCAQ-----TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
E+ E D +V DL Y FR+ VN G PS P+
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114
Score = 87.0 bits (216), Expect = 1e-20
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 208 NGKDSVEVEV-IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEA 266
+ S + + + P PP +SN+ VTL ++ P DG I +++V+
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGV 59
Query: 267 TGR---WTPAGE--TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
G W + E +EV L P Y FR+R VN G S P + I+
Sbjct: 60 VGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117
Score = 75.1 bits (185), Expect = 2e-16
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG---VWIPVGK-TREPE 111
P L +SNI TL++ +P DG + +LVE G W+ + + + EP+
Sbjct: 19 GPPTNLGISNIGPRSVTLQF-RPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77
Query: 112 MD---VTGLTPGHEYKFRVKALNKEGESEP 138
V L P Y FR++ +N G S P
Sbjct: 78 ARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 20/100 (20%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+L++ P DG I ++VE G+ +W+ + D + + L
Sbjct: 34 VTLQFRPG-YDGKTSISRWLVEAQVGVVGEGE-EWLLIHQLSNEPDA----RSMEVPDL- 86
Query: 579 RSDTAQYT--VTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+ Y+ + N G T PS P IQ
Sbjct: 87 -NPFTCYSFRMRQVNIVG----------TSPPSQPSRKIQ 115
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 102 bits (257), Expect = 3e-26
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
S + D P PP P +V++V VTL W+ P G P Y+++ ++
Sbjct: 4 GSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNS 61
Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPG 326
T V GL PN Y F VRA+N QG S+P + + ++ G
Sbjct: 62 WQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSSG 117
Score = 101 bits (253), Expect = 1e-25
Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 308 EPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY 367
++ + + + PG P P++ D + V L+W P G P YIIE +
Sbjct: 2 SSGSSGKNYDLSDL---PGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQS 57
Query: 368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
+ T V L Y F V A+N G +PS + P + S
Sbjct: 58 VSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 86.3 bits (214), Expect = 2e-20
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-ETGVWIPVG-KTREPEMD 113
P +V+++ K+ TL W +P G P Y++E + + W V +
Sbjct: 17 GPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYT 75
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
V GL P Y F V+A+N +G S+P + +D
Sbjct: 76 VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 40.8 bits (96), Expect = 2e-04
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 21/98 (21%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+L W P G P Y++E +T V T T+R L+
Sbjct: 32 VTLSWQPG-TPGTLPASAYIIEAFSQSVS----NSWQTVANHVKT------TLYTVRGLR 80
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+ + V A N QG PS P++
Sbjct: 81 PNTIYLFMVRAINPQG----------LSDPSPMSDPVR 108
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 102 bits (257), Expect = 3e-26
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
+G E+ + +P P P +++N +TL WK P D G I+ +V++ DE
Sbjct: 3 SGSSGAEIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAPSD-NGSKIQNFVLE-WDEGK 59
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
G G ++ L P KFR+ A N G S +
Sbjct: 60 GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 111
Score = 92.5 bits (230), Expect = 1e-22
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
G S P P P I + + + L W P + GS I +++E
Sbjct: 1 GSSGSSGAEIFTTLSCE---PDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWD 56
Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
E E C G + K+ L +FR+ A N G S+ +
Sbjct: 57 EGKGN-GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108
Score = 86.3 bits (214), Expect = 2e-20
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD-PETGVWIPVGKTREPEMDV 114
D P ++N K+ TL+W P D G ++ +++E + G + + + +
Sbjct: 19 DIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77
Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
T L+P KFR+ A N G S E
Sbjct: 78 TKLSPAMGCKFRLSARNDYGTSGFSEE 104
Score = 40.1 bits (94), Expect = 3e-04
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+L+W P D G+ I+ +++E E + + K+ I + R
Sbjct: 34 LTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFR--- 89
Query: 579 RSDTAQYTVTATNSQG 594
++A N G
Sbjct: 90 --------LSARNDYG 97
Score = 27.7 bits (62), Expect = 5.2
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 31/110 (28%)
Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT-------WE--------ISNYLQELHSS 638
G I ++ +P P P + + T W+ I N++ E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPP-----RIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEG 58
Query: 639 LMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
Y+ + K+ I + R ++A N G
Sbjct: 59 KGNGEFCQCYMGSQKQFKITKLSPAMGCKFR-----------LSARNDYG 97
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 107 bits (268), Expect = 7e-26
Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 24/226 (10%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G + + P + V +V ++W P ++ ++
Sbjct: 1 GSPGISGGGGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGE 55
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
+ P++ V+ L P +Y+ + AV +S+ +T + E P
Sbjct: 56 GGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTE-------IDAP 108
Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL- 387
+ ++L W E + Y + + + +G P K
Sbjct: 109 KNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 164
Query: 388 -DLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
DL+ G +Y + AV P+ + +P S
Sbjct: 165 TDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSE 210
Score = 104 bits (262), Expect = 4e-25
Identities = 41/218 (18%), Positives = 66/218 (30%), Gaps = 21/218 (9%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
+++A +S + P L+V + A + L+W + ++Y
Sbjct: 83 VSISAVRGTN-ESDASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSEA----EAQEYK 136
Query: 260 VDKMDEATGRWTPA--GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
V A ++ + GP T + L+P +Y + AV +S P T A E
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE 196
Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
P + + L WT PI Y I E
Sbjct: 197 -------LDSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEV--TV 243
Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
D + DL G +Y + A S A
Sbjct: 244 PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDA 281
Score = 92.6 bits (230), Expect = 6e-21
Identities = 48/292 (16%), Positives = 90/292 (30%), Gaps = 57/292 (19%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
+GP + V ++ ++W P+ ++ L++ Y G +P +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLK-YGLVGGEGGKTTFRLQPPLSQ 69
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETF------------------SSII-----AR 148
V L PG Y+ + A+ ES+ T +S+ +
Sbjct: 70 YSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSE 129
Query: 149 DPYSKYT---SVSSLDSHKRSNQPCGSGMVR--KVQHLDYNTKLGVRMAQRADAGFYTVT 203
+Y S + + + P G G + L T+ GV ++
Sbjct: 130 AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVG-----------IS 178
Query: 204 AENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKM 263
A N K S+ + + P L V+ ++L W PI+ Y +
Sbjct: 179 AVM-NSKQSIPATMNARTELDSPRD-LMVTASSETSISLIWTKASG----PIDHYRITFT 232
Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ T + L P +Y + A + +S T A
Sbjct: 233 PS--SGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAF 282
Score = 52.9 bits (127), Expect = 1e-07
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
LD L V+ + +L W K P++ Y + +
Sbjct: 197 LDSPRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSEVTVPRDRTSYTL 252
Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
T L PG EY + A +S
Sbjct: 253 TDLEPGAEYIISITAERGRQQSLE 276
Score = 34.0 bits (78), Expect = 0.14
Identities = 23/198 (11%), Positives = 54/198 (27%), Gaps = 33/198 (16%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
++W PP + Y + E R+ ++ +++ L+
Sbjct: 31 AFVEWTPPRAKVDFILLKYGLVGGEGGKTTF----------RLQPPL----SQYSVQALR 76
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLT--DVTWE-----ISNY 631
+ +++A + T + AP+ T T D+ W+ Y
Sbjct: 77 PGSRYEVSISAVRGTNESDASSTQFTT-EIDAPKNLRVGSRTATSLDLEWDNSEAEAQEY 135
Query: 632 LQELHSSLMPISLESQYLMNDKRVTIDNVDYF-TKITIRPLQRSDTAQYTVTATNSQGKD 690
+ + V + TK T+ L ++A + +
Sbjct: 136 K---------VVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS 186
Query: 691 QVFIEVVVTDKPSAPEGP 708
+ + +P
Sbjct: 187 IP-ATMNARTELDSPRDL 203
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 100 bits (250), Expect = 2e-25
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P P P A+ + L W P DGG PI Y V+ +G
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVE 66
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
V L+P Y FR+RA NK G
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 97
Score = 98.9 bits (247), Expect = 6e-25
Identities = 28/91 (30%), Positives = 34/91 (37%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
P L+W P DGG P+ Y VE E V + E E V+
Sbjct: 12 CLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSS 71
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIA 147
L PG Y FR++A NK G E A
Sbjct: 72 LLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 98.2 bits (245), Expect = 1e-24
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 325 PGKPGTPEIKDFDTD-FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
PG P ++ ++L W PP +GGSPI Y +E + +G +
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVE 66
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 419
V L+ G Y FR+ A NK G G S+ A
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102
Score = 50.0 bits (120), Expect = 9e-08
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
+ L+W PP DGG+PI Y VE + +
Sbjct: 18 QGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD----EPREVYQGSE--------V 65
Query: 571 KITIRPLQRSDTAQYTVTATNSQG 594
+ T+ L T + + A N G
Sbjct: 66 ECTVSSLLPGKTYSFRLRAANKMG 89
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 104 bits (260), Expect = 3e-25
Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 16/227 (7%)
Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
G P + + +W P Y V + A + V
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESE-AHLLDSKVPS 59
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
+E+ L P Y+ +V A QG+ ++ + + P +PG + +
Sbjct: 60 VELTNLYPYCDYEMKVCAYGAQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVTQ 116
Query: 343 LAWTPPEQNGGSPIVGYII-----EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
L+W P + G I Y + + +K + +L E Y +
Sbjct: 117 LSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRY 175
Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 444
V A N G G + + K+ + + ++G ++
Sbjct: 176 TVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222
Score = 70.2 bits (172), Expect = 1e-13
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 18/163 (11%)
Query: 200 YTVTAENINGKDSVEVEVIVL----DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
V A G + ++ + PS PG L + V + L W P + G I
Sbjct: 73 MKVCAYGAQG-EGPYSSLVSCRTHQEVPSEPGR-LAFNVVSSTVTQLSWAEPAETNG-EI 129
Query: 256 EKYVV-----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
Y V + + G L +E L + Y++ V+A N G
Sbjct: 130 TAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPER 189
Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE-----LAWTPP 348
++ + P P P+I D E L ++
Sbjct: 190 EAIINLATQ-PKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
Score = 52.1 bits (125), Expect = 1e-07
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---- 110
P P L + + L W +P + G + Y V Y P+G ++
Sbjct: 99 PSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVC-YGLVNDDNRPIGPMKKVLVDN 156
Query: 111 ----EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ + L Y++ VKA N G E
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA 191
Score = 42.5 bits (100), Expect = 2e-04
Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 42/208 (20%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
W PP Y V+ + + + V + N+ + ++
Sbjct: 22 IHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMK--- 74
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT----DKPSAPEGPIQWLLTLTD--VTWE----- 627
V A +QG + + +V + PS P +++ T ++W
Sbjct: 75 --------VCAYGAQG-EGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAET 125
Query: 628 ---ISNYL---QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 681
I+ Y ++ PI + L+++ + + I L+ S +YTV
Sbjct: 126 NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN--------RMLLIENLRESQPYRYTV 177
Query: 682 TATNSQGK-DQVFIEVVVTDKPSAPEGP 708
A N G + + + +P P
Sbjct: 178 KARNGAGWGPEREAIINLATQPKRPMSI 205
Score = 42.1 bits (99), Expect = 3e-04
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
L W P + G Y + + D + + + + I L+ S
Sbjct: 117 LSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN------RMLLIENLRES 170
Query: 581 DTAQYTVTATNSQGK-DQVFIEVVVTDKPSAPEG-PIQWLLTLTDVTW 626
+YTV A N G + + + +P P PI + + D
Sbjct: 171 QPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQS 218
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 110 bits (276), Expect = 3e-25
Identities = 64/441 (14%), Positives = 118/441 (26%), Gaps = 58/441 (13%)
Query: 30 TLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGY 89
+ K + + + ++ + D L+W L G+
Sbjct: 444 EVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGF 503
Query: 90 LVE-------------------------KYDPETGVWIPVGKTREPEMDVTGLTPGHEYK 124
++ P + GL P +Y
Sbjct: 504 MLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYA 563
Query: 125 FRVKALNKEGESEPLETFSSIIA------------RDPYSKYTSVSSL----DSHKRSNQ 168
VK L + S I DP S S S + N
Sbjct: 564 IFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG 623
Query: 169 P--------CGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
++ LDY K ++ F + ++ N + +
Sbjct: 624 NITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPD---DDGGQPIEKYVVDKMDEATGRWTPAGETE 277
P LK + T + + + + + D + E
Sbjct: 684 SCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV 743
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQP--GKPGTPEIKD 335
L + GL Y+ ++A N+ E + A + A+ G +
Sbjct: 744 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 803
Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG--KVLDLIEGN 393
F+ + V L W P++ G IV Y + + C + + ++ L GN
Sbjct: 804 FENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN 862
Query: 394 QYEFRVLAVNKGGPGEPSDPT 414
Y R+ A + G G ++PT
Sbjct: 863 -YSVRIRATSLAGNGSWTEPT 882
Score = 80.3 bits (197), Expect = 1e-15
Identities = 57/487 (11%), Positives = 116/487 (23%), Gaps = 79/487 (16%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
YN KL +++ + T D + + L
Sbjct: 430 YNPKL--CLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILL 487
Query: 243 DWKVPDDDGGQPIEKYVV-----------------------DKMDEATGRWTPAGETEGP 279
W+ + + +++ + +
Sbjct: 488 RWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQN 547
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS--IEAKNPFNQPGKPGTPEIKDFD 337
G + GL P +Y V+ + S I + P P P
Sbjct: 548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNS 607
Query: 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
+ + L W PP G I Y++ + + K + +
Sbjct: 608 SSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELDYCLKGLK------LPSRTWSP 660
Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE-FDINVIGEPIP 456
+ + + + + + +L + R FE + NV+ P P
Sbjct: 661 PFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR--KTFEDYLHNVVFVPRP 718
Query: 457 TKE-------WLCND-------ITIISKDRFKIVNDDKSTK---------LKVFDSKRGD 493
+++ + +++K+ I T + +
Sbjct: 719 SRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV 778
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMVEKMETDTGK 548
+ + D VT L W P++ G I Y V +
Sbjct: 779 AAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEE 837
Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF---IEVVVT 605
+ + +R L + AT+ G + + VT
Sbjct: 838 LH-LCDTRKHFALE-------RGCRLRGLSPG-NYSVRIRATSLAG-NGSWTEPTYFYVT 887
Query: 606 DKPSAPE 612
D P
Sbjct: 888 DYLDVPS 894
Score = 52.2 bits (124), Expect = 5e-07
Identities = 53/471 (11%), Positives = 100/471 (21%), Gaps = 122/471 (25%)
Query: 319 KNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK------------ 366
+ + + D + L W P ++G+++ KE
Sbjct: 463 GDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQD 522
Query: 367 -----------YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----PGEP 410
P + P + L QY V + G
Sbjct: 523 ACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAK 582
Query: 411 SD----------PTAPHIARAKKVS----------PYINRDQLSDIKVRAGSNFEFDINV 450
SD P+ P + S P ++ V E
Sbjct: 583 SDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELF 642
Query: 451 IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
+ L + + K S+ DS + +
Sbjct: 643 ELDYCLKGLKLPSRTWSPP--------FESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 694
Query: 511 TAKVTVLGCSLKWNPPEDDG------GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTID 564
+ + + + + + N + + I
Sbjct: 695 ELEESSF--RKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVIS 752
Query: 565 NVDYFTKITIRPLQRSDTAQYTVTATNSQGK-------DQVFIEVVVTDKPSAPEGPIQW 617
+ +FT I + A N V + K GP+
Sbjct: 753 GLRHFTGYRIE-----------LQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801
Query: 618 LLTLTD---VTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
+ + + W+ I Y E Y +R + +
Sbjct: 802 EIFENNVVHLMWQEPKEPNGLIVLY-------------EVSY----RRYGDEELHLCDTR 844
Query: 667 TIRPLQRSDTA--------QYTVTATNSQGKDQVF---IEVVVTDKPSAPE 706
L+R + AT+ G + + VTD P
Sbjct: 845 KHFALERGCRLRGLSPGNYSVRIRATSLAG-NGSWTEPTYFYVTDYLDVPS 894
Score = 41.8 bits (97), Expect = 8e-04
Identities = 34/221 (15%), Positives = 63/221 (28%), Gaps = 33/221 (14%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYF--------- 569
L+W P + +M+ E V + + VD
Sbjct: 485 ILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPK 544
Query: 570 ----TKITIRPLQRSDTAQYTVTATNSQGKDQVFI-----EVVVT---DKPSAPEGPIQW 617
+R L+ V + ++ + V PS P PI
Sbjct: 545 SQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISV 604
Query: 618 LLTLTD--VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP-LQRS 674
+ + + W+ + P + YL+ +R D+ + ++ S
Sbjct: 605 SNSSSQIILKWKPPSD---------PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPS 655
Query: 675 DTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSL 715
T + +SQ +Q E + S P+ QI L
Sbjct: 656 RTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Score = 39.9 bits (92), Expect = 0.003
Identities = 34/242 (14%), Positives = 60/242 (24%), Gaps = 76/242 (31%)
Query: 75 WNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEG 134
P+ G + + E + + ++GL Y+ ++A N++
Sbjct: 713 VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN-KESLVISGLRHFTGYRIELQACNQDT 771
Query: 135 ESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQR 194
E + + AR +
Sbjct: 772 PEERCSVAAYVSARTM----------------------------------------PEAK 791
Query: 195 ADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQP 254
AD VT E + V + +P P G
Sbjct: 792 ADDIVGPVTHEIFE-NNVVHLM---WQEPKEPNGL------------------------- 822
Query: 255 IEKYVV--DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEP 309
I Y V + + + G + GL P + Y R+RA + G +EP
Sbjct: 823 IVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEP 881
Query: 310 LT 311
Sbjct: 882 TY 883
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 102 bits (257), Expect = 4e-25
Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 13/202 (6%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWK---VPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
D P P ++ S + + + + W +P Y V
Sbjct: 2 DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK-NAN 60
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP---EIK 334
V GL PN Y+F V + S + + P P K
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGTTFELVPTSPPKDVTVVSK 117
Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEG 392
+ + + W PP + G I GYII + G+ ++ +L
Sbjct: 118 EGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLD 176
Query: 393 NQYEFRVLAVNKGGPGEPSDPT 414
Y F++ A N G G S+
Sbjct: 177 TPYYFKIQARNSKGMGPMSEAV 198
Score = 45.6 bits (108), Expect = 2e-05
Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 7/89 (7%)
Query: 57 PEGP---LEVSNIHKDGCTLKWNKP---KDDGGEPLEGYLVEKYDPETGVWIP-VGKTRE 109
P P ++ S + D + W K Y V
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEP 138
VTGL P Y+F V S
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTW 92
Score = 44.8 bits (106), Expect = 3e-05
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPV-GKTREPEMDVTGLTPGHEYKFRV 127
+ W P + G + GY++ + E W+ + LT Y F++
Sbjct: 125 IVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 183
Query: 128 KALNKEGESEPLETFS 143
+A N +G E
Sbjct: 184 QARNSKGMGPMSEAVQ 199
Score = 35.5 bits (82), Expect = 0.032
Identities = 23/190 (12%), Positives = 42/190 (22%), Gaps = 42/190 (22%)
Query: 520 SLKWNPP---EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRP 576
+ W + YY V K + + T
Sbjct: 22 RITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFS- 80
Query: 577 LQRSDTAQYTVTATNSQGKDQVFIEVVVT----DKPSAPEGPIQWLLTLTD-----VTWE 627
V T + + P++P + + V W+
Sbjct: 81 ----------VMVTKGRR-SSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ 129
Query: 628 --------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVD-YFTKITIRPLQRSDTAQ 678
I+ Y+ I + I+ V I+ L
Sbjct: 130 PPSEANGKITGYI---------IYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYY 180
Query: 679 YTVTATNSQG 688
+ + A NS+G
Sbjct: 181 FKIQARNSKG 190
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 97.8 bits (244), Expect = 2e-24
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE-GDTPK 383
P P E+ D V+L+WTP + SPI +IIE ++ QTE T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 421
L+L Y FRV+AVN G PS+ + ++ +A
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113
Score = 94.4 bits (235), Expect = 4e-23
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
+ S V D P+PP ++++ + V L W P DD PI K++++ D
Sbjct: 2 SSGSSGPTPAPVYDVPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMH 59
Query: 268 GRWTPAGETEGPVTG-LEVEGLIPNHKYKFRVRAVNKQGKSEP------LTTTASIEAKN 320
+TE T L P Y FRV AVN GKS P T AS KN
Sbjct: 60 KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKN 119
Query: 321 PFNQPG 326
P + P
Sbjct: 120 PTSGPS 125
Score = 75.1 bits (185), Expect = 2e-16
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-- 113
+P LE+++ L W P DD P+ +++E D + +T
Sbjct: 18 NPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 114 -VTGLTPGHEYKFRVKALNKEGESEP 138
L+P Y FRV A+N G+S P
Sbjct: 77 AQLNLSPYVNYSFRVMAVNSIGKSLP 102
Score = 37.3 bits (87), Expect = 0.003
Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
L W P DD +PI +++E + V L
Sbjct: 33 VQLSWTPG-DDNNSPITKFIIEYEDAMH---------KPGLWHHQTEVSGTQTTAQLNLS 82
Query: 579 RSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGP 614
+ V A NS GK E +T K S P+
Sbjct: 83 PYVNYSFRVMAVNSIGKSLPSEASEQYLT-KASEPDKN 119
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 95.2 bits (237), Expect = 1e-23
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 405 GGPGEPSDPTAPHIARAKKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPTKEWLC 462
G G P R P I + + G + G+P P W
Sbjct: 1 GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60
Query: 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ R + D T V + R DSG Y L+V+ D T ++ V+
Sbjct: 61 GGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 58.6 bits (142), Expect = 9e-11
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 551 IKWIRTN----DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
+ W + RV + D+ T +R RSD+ +Y ++ KD I + V +
Sbjct: 56 VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVE 115
Query: 607 KP 608
K
Sbjct: 116 KA 117
Score = 58.6 bits (142), Expect = 1e-10
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
RV + D+ T +R RSD+ +Y ++ KD I + V +K
Sbjct: 67 TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 54.7 bits (132), Expect = 2e-09
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
V+ D++T VR A R+D+G Y ++ + N KD+ + + V++K
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 94.4 bits (235), Expect = 2e-23
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P ++ + + ++ + PE GG PI+ Y E + +W +
Sbjct: 7 PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 385 ---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
++ L Y R+ A+N G GE S +
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
Score = 86.7 bits (215), Expect = 9e-21
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---T 276
+D PS P ++ + + P+ GG PI KY + W
Sbjct: 4 MDTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ + GL P Y R+ A+N +G E
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI 94
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 57 PEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-----TREP 110
P P + +++++P+ GG P+ Y E VW + E
Sbjct: 7 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 66
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ + GL P Y R+ ALN +G E
Sbjct: 67 IVTIVGLKPETTYAVRLAALNGKGLGEI 94
Score = 47.0 bits (112), Expect = 9e-07
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
++++ PE GG PI Y E KW + + +TI L+
Sbjct: 22 AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME-------GIVTIVGLK 74
Query: 579 RSDTAQYTVTATNSQG 594
T + A N +G
Sbjct: 75 PETTYAVRLAALNGKG 90
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 94.3 bits (235), Expect = 2e-23
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 478
+ P I D KVRAG + E V G T W+ I + K+ N
Sbjct: 1 GSSGSSGPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS 59
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+ +KL + +++ G YTL V+N G+ + +TV+
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99
Score = 66.6 bits (163), Expect = 1e-13
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
W++ + + ++N + +K+TI ++ YT+ N G Q + + V
Sbjct: 39 CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98
Query: 606 DKPSAPEGP 614
DKP P G
Sbjct: 99 DKPDPPAGT 107
Score = 66.6 bits (163), Expect = 2e-13
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ + + ++N + +K+TI ++ YT+ N G Q + + V DKP P G
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
Score = 63.9 bits (156), Expect = 1e-12
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
KV++ + +KL + A++ G YT+ EN G +V + V+DKP PP G
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 99.9 bits (249), Expect = 3e-23
Identities = 40/222 (18%), Positives = 61/222 (27%), Gaps = 17/222 (7%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA--EGVTLDWKVPDDD-GGQPIE 256
T+T N+ G S + + P+ + ++W P + +E
Sbjct: 76 ATLTVRNLVG-KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILE 134
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
V+ W E L + Y V V G P SI
Sbjct: 135 WCVLSDKAPCITDWQQ--EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESI 188
Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEK 373
+A P K T K + L W QNG I Y I + E
Sbjct: 189 KAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG--FIRNYTIFYRTIIG--NET 244
Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ + + L Y R+ A G + + T
Sbjct: 245 AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286
Score = 96.4 bits (240), Expect = 3e-22
Identities = 43/202 (21%), Positives = 66/202 (32%), Gaps = 20/202 (9%)
Query: 221 DKPS-PPGGPLKVSNVHAEG---VTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
D+PS P K+ H +G V L WK +P + I Y V +
Sbjct: 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY--- 58
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
V ++ + N +Y + N GKS+ A + Q P
Sbjct: 59 ---TVNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAF 111
Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL--DLIEGN 393
+ + + WT P ++ I+ + + + Q E T L +L E
Sbjct: 112 PKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW---QQEDGTVHRTYLRGNLAESK 168
Query: 394 QYEFRVLAVNKGGPGEPSDPTA 415
Y V V GPG P A
Sbjct: 169 CYLITVTPVYADGPGSPESIKA 190
Score = 67.1 bits (164), Expect = 2e-12
Identities = 32/262 (12%), Positives = 60/262 (22%), Gaps = 30/262 (11%)
Query: 72 TLKW-NKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
L W P + + Y V ++ + +T Y +
Sbjct: 26 QLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNATKLTVNLTNDRYLATLTVR 81
Query: 131 NKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKR--------SNQPCGSGMVRKVQHLD 182
N G+S+ + + + V
Sbjct: 82 NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDK 141
Query: 183 YNTKLGVRMAQRADAGFYT-------------VTAENINGK-DSVEVEVIVLDKPSPPGG 228
+ Y VT +G ++ + P G
Sbjct: 142 APCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGP 201
Query: 229 PLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEG 287
++ V L+W +P D I Y + G T + T +
Sbjct: 202 TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTI-FYRTIIGNETAV-NVDSSHTEYTLSS 259
Query: 288 LIPNHKYKFRVRAVNKQGKSEP 309
L + Y R+ A +G +
Sbjct: 260 LTSDTLYMVRMAAYTDEGGKDG 281
Score = 47.5 bits (113), Expect = 6e-06
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 15/108 (13%)
Query: 48 LVEKDRGLDPEGPLEV--SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKY-----DPETGV 100
L P+ + + ++W P++ ++ Y++E P
Sbjct: 92 LTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITD 147
Query: 101 WIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
W T L Y V + +G P SI A
Sbjct: 148 WQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAY 191
Score = 47.5 bits (113), Expect = 7e-06
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 7/78 (8%)
Query: 340 FVELAWTPPEQN-GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
V+L W I+ Y + S + T + ++Y
Sbjct: 24 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTV------NLTNDRYLAT 77
Query: 399 VLAVNKGGPGEPSDPTAP 416
+ N G + + T P
Sbjct: 78 LTVRNLVGKSDAAVLTIP 95
Score = 43.3 bits (102), Expect = 1e-04
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNK-PKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
P + + K+ L+W++ P D + Y + + E
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYT 256
Query: 114 VTGLTPGHEYKFRVKALNKEGESEP 138
++ LT Y R+ A EG +
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDG 281
Score = 35.2 bits (81), Expect = 0.067
Identities = 24/183 (13%), Positives = 43/183 (23%), Gaps = 39/183 (21%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
++W P + I + V + + T + N+ I
Sbjct: 119 VEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLIT----- 173
Query: 581 DTAQYTVTATNSQGKDQVFIEVVVT--DKPSAPEGPIQWLLTLT--DVTWEISNYLQELH 636
VT + G PS + + W+
Sbjct: 174 ------VTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWD--------- 218
Query: 637 SSLMPISLESQ----------YLMNDKRVTIDNVDY-FTKITIRPLQRSDTAQYTVTATN 685
+ ++ Q Y T NVD T+ T+ L + A
Sbjct: 219 ----QLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYT 274
Query: 686 SQG 688
+G
Sbjct: 275 DEG 277
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 94.5 bits (235), Expect = 3e-23
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
EA+ +P P + + +L+ T + +GG+PI+ YI++ + K +
Sbjct: 1 EAEASMREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKK 58
Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
+G+ + L YE ++ A N+ G EP+ + + +
Sbjct: 59 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDH 109
Score = 92.6 bits (230), Expect = 1e-22
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+ +PSPP + + L DDGG PI +Y+V + + +G
Sbjct: 5 SMREPSPPS--IHGQPSSGKSFKLSIT-KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQG 61
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ +E L Y+ ++ A N+ G SEP S+ K
Sbjct: 62 NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPK 102
Score = 74.9 bits (184), Expect = 2e-16
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 55 LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT--REP 110
+ P + L +DDGG P+ Y+V+ + K +
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSI-TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD 64
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
+ + L Y+ ++ A N+ G SEP S+ +
Sbjct: 65 HIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPN 104
Score = 41.4 bits (97), Expect = 1e-04
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L DDGGAPI Y+V+ D + I + LQ
Sbjct: 25 KLSITKQ-DDGGAPILEYIVKYRSKDKE----DQWLEKKVQGNK------DHIILEHLQW 73
Query: 580 SDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPE 612
+ + +TA N G + V+ + +
Sbjct: 74 TMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 92.4 bits (230), Expect = 1e-22
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P + + V L W P+ Y I+ + + T +
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGP-FQEVDGVATTRY 63
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ L ++Y FRVLAVN G G PS+
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95
Score = 78.1 bits (193), Expect = 1e-17
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
P PP V+ A VTL W +P+ Y + T +
Sbjct: 6 SGPKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-VAT 60
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
T + GL P +Y FRV AVN G+ P
Sbjct: 61 TRYSIGGLSPFSEYAFRVLAVNSIGRGPP 89
Score = 75.0 bits (185), Expect = 1e-16
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDV 114
P L V+ TL W+ EP+ Y ++ T V +
Sbjct: 9 KPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSI 65
Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
GL+P EY FRV A+N G P
Sbjct: 66 GGLSPFSEYAFRVLAVNSIGRGPP 89
Score = 35.0 bits (81), Expect = 0.013
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+L W+ P+ YY ++ T + R +I + F++ R
Sbjct: 25 TLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFR---- 77
Query: 580 SDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAPE 612
V A NS G+ + V T + S P
Sbjct: 78 -------VLAVNSIGRGPPSEAV---RARTGEQSGPS 104
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 92.9 bits (231), Expect = 1e-22
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Query: 318 AKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQT 377
+ + P P ++ + + ++ + PE GG PI+ Y E + +W
Sbjct: 1 GSSGSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 378 EGDTPKG---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ ++ L Y R+ A+N G GE S +
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101
Score = 82.9 bits (205), Expect = 4e-19
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV-- 280
PS P ++ + + P+ GG PI KY + W
Sbjct: 8 PSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65
Query: 281 -TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
+ + GL P Y R+ A+N +G E + AS P +P P
Sbjct: 66 EGIVTIVGLKPETTYAVRLAALNGKGLGEI--SAASEFKTQPVREPSAP 112
Score = 73.3 bits (180), Expect = 8e-16
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 57 PEGP-LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWI-----PVGKTREP 110
P P ++ + +++++P+ GG P+ Y E VW + E
Sbjct: 8 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 67
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYS 152
+ + GL P Y R+ ALN +G E +S P
Sbjct: 68 IVTIVGLKPETTYAVRLAALNGKGLGEISA--ASEFKTQPVR 107
Score = 48.6 bits (116), Expect = 4e-07
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
++++ PE GG PI Y E KW + + +TI L+
Sbjct: 23 AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME-------GIVTIVGLK 75
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
T + A N +G ++ +P
Sbjct: 76 PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSA 111
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 91.6 bits (228), Expect = 1e-22
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
+ P I IK++AG +++ IG P PT W D + +T
Sbjct: 1 LKPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ +KR DSG Y L VKN G D+ +V V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 52.7 bits (127), Expect = 6e-09
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
W + +D T I +R+D+ Y + N G+D+ EV+V
Sbjct: 34 ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 51.6 bits (124), Expect = 2e-08
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ +D T I +R+D+ Y + N G+D+ EV+V
Sbjct: 43 AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 46.5 bits (111), Expect = 1e-06
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 165 RSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+ V T + A+RAD+G Y + +N G+D EVIV
Sbjct: 38 VGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 92.5 bits (230), Expect = 2e-22
Identities = 21/90 (23%), Positives = 34/90 (37%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P T F++L W P + + Y + ++ + +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ +L+ Y FRV+A NK G GE S P
Sbjct: 78 TIQNLMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 88.6 bits (220), Expect = 4e-21
Identities = 25/101 (24%), Positives = 33/101 (32%), Gaps = 1/101 (0%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G PS P + S V + L W+ P D Y V E
Sbjct: 4 GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
R + + ++ L+P Y FRV A NK G E
Sbjct: 63 RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES 103
Score = 70.9 bits (174), Expect = 5e-15
Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLT 118
+ S + L W P D Y V E ++ + L
Sbjct: 24 VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLM 83
Query: 119 PGHEYKFRVKALNKEGESEP 138
P Y FRV A NK G E
Sbjct: 84 PATVYIFRVMAQNKHGSGES 103
Score = 43.6 bits (103), Expect = 2e-05
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L W P D Y V + + N ++TI+ L
Sbjct: 35 KLTWRTPASDPHGDNLTYSVFYTKEGIA----RERVENTSHPGE------MQVTIQNLMP 84
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ + V A N G + + V +P +
Sbjct: 85 ATVYIFRVMAQNKHGSGESSAPLRVETQPESGPSS 119
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 94.8 bits (236), Expect = 2e-22
Identities = 40/195 (20%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
++ D+ + G + ++G P+P +W +I ++K+ +D ++ L V ++
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL- 550
D G+YT N G + ++K+ + P+ G P++ EK G L
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLLQA------TPQFHPGYPLK----EKYYGAVGSTLR 122
Query: 551 ------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNS 592
+ W N + +TI+N +++T + ++ +QR + +Y V +N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 593 QGKDQVFIEVVVTDK 607
G ++V + DK
Sbjct: 183 FGTVDAILDVEIQDK 197
Score = 66.3 bits (162), Expect = 1e-12
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 40/175 (22%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
IKW R ++ + + +T+ ++ D YT ATN G+ + ++++
Sbjct: 39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
Query: 606 DKPSAPEGPIQWL---------LTLT---------DVTWEISNYLQELHSSLMPISLESQ 647
P G L L +TW +
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTW----------------FHGQK 142
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVVTDK 701
L N + +TI+N +++T + ++ +QR + +Y V +N G ++V + DK
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 41.6 bits (98), Expect = 3e-04
Identities = 11/61 (18%), Positives = 26/61 (42%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
L+ ++ + + +T+ ++ D YT ATN G+ + ++++ P G
Sbjct: 48 LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
Query: 709 I 709
Sbjct: 108 P 108
Score = 38.9 bits (91), Expect = 0.002
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 177 KVQHLDYNTKLGVRMAQR-ADAGFYTVTAENINGKDSVEVEVIVLDK 222
+++ ++ T L ++ QR AG Y V N+ G ++V + DK
Sbjct: 151 TIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
Score = 38.5 bits (90), Expect = 0.003
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS-PPGGPLKVSN 234
K+ L V ++ D G YT A N G+ ++++ P PG PLK
Sbjct: 54 YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 235 VHAEGVTLDWKVP 247
A G TL V
Sbjct: 114 YGAVGSTLRLHVM 126
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 96.5 bits (240), Expect = 6e-22
Identities = 37/321 (11%), Positives = 79/321 (24%), Gaps = 45/321 (14%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
P+ +V N V + W ++ I ++ + +
Sbjct: 5 FTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE------ 535
L + + + D+GIY + +K+ G DK K+
Sbjct: 63 --LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
Query: 536 ----YYMVEKMETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
+ + + + W RV + I +D +Y
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSL----MPI 642
+ + + Q +++ A + +
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 643 SLE----------------SQYLMNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATN 685
+L + L +D + TI + +D+ +Y + N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Query: 686 SQGKDQVFIEVVVTDKPSAPE 706
G + V V PE
Sbjct: 301 KYGSETSDFTVSVF----IPE 317
Score = 76.9 bits (189), Expect = 2e-15
Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 36/248 (14%)
Query: 396 EFRVLAVNKGG----PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 451
+ V+ + G + D + ++ L G +
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV-TY 133
Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
W N I DR K + L++ + D G Y + + + + T
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193
Query: 512 AKVTVLGCS--------LKWNPPEDDGGAPIEYYMVEKMETDTGKVL------------- 550
++ LK + A + + + + GK L
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W + ++D TI + +D+ +Y + N G + V V
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 605 TDKPSAPE 612
PE
Sbjct: 314 F----IPE 317
Score = 51.1 bits (122), Expect = 5e-07
Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 18/171 (10%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
K D L + + DAG Y V ++ GKD ++++ K +
Sbjct: 52 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKK--I 109
Query: 236 HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE-----------TEGPVTGLE 284
L + G + +V +++ W+ G G L+
Sbjct: 110 ALSATDLKIQS--TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167
Query: 285 VEGLIPNHKYKFRVRAVNKQGKSE---PLTTTASIEAKNPFNQPGKPGTPE 332
+ PN K K+ + + + + L+ A EA F + + E
Sbjct: 168 INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218
Score = 41.1 bits (96), Expect = 8e-04
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ D++ D + I + D Y V + +GKD+ +++V
Sbjct: 48 ISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEV 105
Query: 709 IQI 711
+
Sbjct: 106 CKK 108
Score = 38.0 bits (88), Expect = 0.009
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
+ AD+G Y + +N G ++ + V V
Sbjct: 266 DDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 95.7 bits (238), Expect = 7e-22
Identities = 50/318 (15%), Positives = 107/318 (33%), Gaps = 69/318 (21%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
+ LS +++ G + F IGEP + IIS R + + ++L
Sbjct: 5 LQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKW-NPPEDDGGAPIEYYMVEKME 543
++++ D+GIY ++ G + T + + L + E +
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVVSP----------QEFKQ 112
Query: 544 TDTGKVL----------IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVT 588
+ +V+ + W+ +++ VT + + F + I + +SD Y
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171
Query: 589 ATN-SQGKDQVFIEVVVTDKPSAPEGPIQWLLTLT-------------------DVTWEI 628
++G+ +V+ + P A P Q T ++W
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMP-QKSFNATAERGEEMTFSCRASGSPEPAISW-- 228
Query: 629 SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
+ + +++ + T++T+R + SD Y ATN G
Sbjct: 229 --------------FRNGKLIEENEKYIL--KGSNTELTVRNIINSDGGPYVCRATNKAG 272
Query: 689 KDQVFIEVVVTDKPSAPE 706
+D+ + V +
Sbjct: 273 EDEKQAFLQVFVQHHHHH 290
Score = 73.7 bits (181), Expect = 2e-14
Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 33/209 (15%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 480
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++
Sbjct: 96 YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 153
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
L++ + + D GIY + + + V+ PP
Sbjct: 154 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPA-----ISMPQKSF 202
Query: 541 KMETDTGKVL-------------IKWIRTNDKRVTIDN----VDYFTKITIRPLQRSDTA 583
+ G+ + I W R N K + + T++T+R + SD
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTELTVRNIINSDGG 261
Query: 584 QYTVTATNSQGKDQVFIEVVVTDKPSAPE 612
Y ATN G+D+ + V +
Sbjct: 262 PYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
Score = 47.9 bits (114), Expect = 5e-06
Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 40/181 (22%)
Query: 551 IKWIRTN------DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVV 603
I W +RV + +++TI D Y AT+++G+ Q + +
Sbjct: 35 IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
Query: 604 VTDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQELHSSLMPISLESQY 648
+ K + E + V+W N ++ S
Sbjct: 95 IYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN---------EEVTTIS-- 143
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN-SQGKDQVFIEVVVTDKPSAPEG 707
D R + + + I + +SD Y ++G+ +V+ + P A
Sbjct: 144 ---DNRFAMLANN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISM 197
Query: 708 P 708
P
Sbjct: 198 P 198
Score = 45.6 bits (108), Expect = 3e-05
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
K NT+L VR +D G Y A N G+D + + V +
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 37.1 bits (86), Expect = 0.013
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDK 222
+ S VQ ++L + A DAG Y A + G+ V + + K
Sbjct: 39 NPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 98
Query: 223 PS 224
+
Sbjct: 99 LT 100
Score = 32.5 bits (74), Expect = 0.48
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENIN-GKDSVEVEVIVLDKPSPPGGPLKVSNVHA 237
+ N L + ++D G Y G+ +++++ P P K N A
Sbjct: 148 AMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA 206
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 95.8 bits (238), Expect = 8e-22
Identities = 41/311 (13%), Positives = 93/311 (29%), Gaps = 41/311 (13%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
++ + ++ + F+ + P W + ++ R ++ + TK+
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPI---------- 534
D D GIY+ V ++ G L L + P+
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 535 --EYYMVEKMETDTGKVLIKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQY 585
+ + E +G + +I ++ ID ++ + LQ D Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 586 TVTATNSQGKDQVFIEVVVTDKPS-APEGPIQWLLTLTDVTWEISNYLQELHSSLMPISL 644
T + + + + +V E Q + YL + + L
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 645 E-----------------SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 687
+ + + D++ + + I + D Y V + +
Sbjct: 242 KCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDR 299
Query: 688 GKDQVFIEVVV 698
GKD+ +++V
Sbjct: 300 GKDKSRLKLVD 310
Score = 70.4 bits (172), Expect = 3e-13
Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 32/240 (13%)
Query: 396 EFRVLAVNKGGPGE-----PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 450
+ + G + + P + +++ F +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 451 -IGEPIPTKEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
++ N+ I ++K+ + ++ + + D G YT +++ T
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL----------------- 550
+ T + E I +E + +V
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251
Query: 551 --IKWIRTNDKRVTIDN----VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
I W + +++ +++D D + I + D Y V + +GKD+ +++V
Sbjct: 252 THIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 59.2 bits (143), Expect = 1e-09
Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 25/263 (9%)
Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG--KSEPLTTTASIEAKNPFNQPGKPGTPE 332
E++G T + + L + + + G S + ++ P P
Sbjct: 52 ESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111
Query: 333 IKDFDTDFVE----LAWTPPEQNGGSPIVGYIIEKKE-KYSPIWEKCAQTEGDTPKGKVL 387
+ + +E W E+ G+ V YI +KE P ++ + +
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 388 DLIEGNQYEFRVLAVNKGG-------------PGEPSDPTAPHIARAKKVSPYINRDQLS 434
L + ++ + + + +K P+ +
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF--VEYL 229
Query: 435 DIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
+V N V T W ++ I ++ D L + + + D
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKD 287
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
+GIY + +K+ G DK K+
Sbjct: 288 AGIYEVILKDDRGKDKSRLKLVD 310
Score = 39.2 bits (91), Expect = 0.003
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
K D L + + DAG Y V ++ GKD ++++
Sbjct: 267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 39.2 bits (91), Expect = 0.004
Identities = 19/170 (11%), Positives = 46/170 (27%), Gaps = 13/170 (7%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK------------PS 224
+V+ TK+ + D G Y+ + +G S + K
Sbjct: 50 EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109
Query: 225 PPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE 284
P L V + V + G + +K ++ + + +
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 169
Query: 285 VEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
+E L + + + + + + T + + + E
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNH-STVVLVGDVFKKLQKEAEFQRQEWI 218
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 89.4 bits (222), Expect = 1e-21
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
++ S +++ P P + ++W P P+ GY +E +
Sbjct: 5 SSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGEL 62
Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ V DL+ + Y FRV A ++ G G +
Sbjct: 63 HRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105
Score = 88.6 bits (220), Expect = 3e-21
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G + P P L S + + + W+ P + P++ Y V+ G
Sbjct: 4 GSSGSHDSRLTAGVPDTPTR-LVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGG 60
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
T + VE L+PNH Y FRVRA +++G +IE+ Q P
Sbjct: 61 ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIES-----QVSGP 115
Query: 329 GT 330
+
Sbjct: 116 SS 117
Score = 72.8 bits (179), Expect = 1e-15
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD-- 113
D L S + + W +P+ + PL+GY VE G + +
Sbjct: 19 DTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNPAQTSVV 76
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
V L P H Y FRV+A ++EG E
Sbjct: 77 VEDLLPNHSYVFRVRAQSQEGWGREREG 104
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+ W P + P++ Y VE + G + R N T + + L
Sbjct: 34 LRVSWQEPRCER--PLQGYSVEYQLLNGG----ELHRLNIPNPA------QTSVVVEDLL 81
Query: 579 RSDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
+ + + V A + +G + + + + S P
Sbjct: 82 PNHSYVFRVRAQSQEGWGREREGVITIESQVSGP 115
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 94.1 bits (234), Expect = 3e-21
Identities = 49/322 (15%), Positives = 97/322 (30%), Gaps = 62/322 (19%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+ P + + D +G F G+P P W + S+ I D+ +
Sbjct: 4 EEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 483 K-LKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
L++ + D +Y +NS G AK+TVL + G P +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL------REDQLPSGFPNIDMGPQ 116
Query: 541 KMETDTGKVL-------------IKWIR--------TNDKRVTIDNVDYFTKITIRPLQR 579
+ + I W + ++ R+ + I +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEE 173
Query: 580 SDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSS 638
+D +Y ATNS G + + V + AP ++ + + +
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAP----RFSILPMSHE------IMPGGNV 223
Query: 639 LMP----------IS--LESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686
+ + ++ L + + + + D+A YT A +S
Sbjct: 224 NITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN------VLELTDVKDSANYTCVAMSS 277
Query: 687 QGKDQVFIEVVVTDKPSAPEGP 708
G + ++ V P A
Sbjct: 278 LGVIEAVAQITVKSLPKAGTKH 299
Score = 76.0 bits (187), Expect = 3e-15
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 24/208 (11%)
Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
+ P I V G P P W + + + +
Sbjct: 103 QLPSGFPNI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYM 538
+S L++ S+ D G Y NS G A + V ++ P
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVR---VQNVAPR------FSILP 212
Query: 539 VEKMETDTGKVL------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
+ G V +KW++ + +T ++ + + D+A YT
Sbjct: 213 MSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPVGRNVLELTDVKDSANYT 271
Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPEGP 614
A +S G + ++ V P A
Sbjct: 272 CVAMSSLGVIEAVAQITVKSLPKAGTKH 299
Score = 54.4 bits (131), Expect = 4e-08
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
A N G S R + V+P + ++ G N +G P+P +W
Sbjct: 183 ATNSAGVRYSSPANL--YVRVQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKW 239
Query: 461 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+ + +D + + + + DS YT +S G + A++TV
Sbjct: 240 MQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291
Score = 39.4 bits (92), Expect = 0.003
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
+ + D+ YT A + G ++ V P
Sbjct: 257 NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
Score = 37.9 bits (88), Expect = 0.008
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIVLDKPSPP 226
+ L + ++ D G Y A N G + S + V + P
Sbjct: 163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP 206
Score = 35.2 bits (81), Expect = 0.068
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 650 MNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ + I+PL+ D Y A NS G+ V ++ V + P G
Sbjct: 49 SQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
Query: 709 IQI 711
I
Sbjct: 109 PNI 111
Score = 34.8 bits (80), Expect = 0.084
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
D Y A+N G+ +V ++ VL + P G
Sbjct: 71 RTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF 108
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 88.3 bits (219), Expect = 3e-21
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P+ P L+ H TL WK P P + Y+++ D G++ G T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREV--YVGKETM 66
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
V+GL N Y RV+A NK G S
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPY 93
Score = 87.9 bits (218), Expect = 4e-21
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
P LE H + TL W +P P +GY++E D G + V +E V G
Sbjct: 13 PILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFREVYVGKETMCTVDG 71
Query: 117 LTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
L Y RVKA NK G S +T +
Sbjct: 72 LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGS 105
Score = 81.7 bits (202), Expect = 7e-19
Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 4/110 (3%)
Query: 318 AKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ 376
+ + P P E + L+W P + P GYI+E + + +
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREV-- 59
Query: 377 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
G V L + Y RV A NK G S + S
Sbjct: 60 YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
Score = 40.9 bits (96), Expect = 1e-04
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+L W P P + Y++E + + G+ + + T+D + + + R
Sbjct: 27 ATLSWKQPPLSTV-PADGYILELDDGNGGQFR-EVYVGKETMCTVDGLHFNSTYNAR--- 81
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
V A N G +V+ +
Sbjct: 82 --------VKAFNKTGVSPYSKTLVLQTSEGSG 106
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 87.9 bits (218), Expect = 6e-21
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 7/110 (6%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
G S +S P P + FV L+W PP + G I + +
Sbjct: 4 GSSGKPAIPSSSVL------PSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFS 56
Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ T+ + + V +L Y FRV+A N+ GPGE S P
Sbjct: 57 REGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106
Score = 80.2 bits (198), Expect = 3e-18
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATG 268
G PS P + V + V L W+ P + G I+ + V E
Sbjct: 4 GSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDN 61
Query: 269 RWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
R T+ L V L P Y FRV A N+ G E
Sbjct: 62 RERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGES 102
Score = 63.2 bits (154), Expect = 3e-12
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEM 112
P P + + L W P + G ++ + V + T+ ++
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
V L P Y FRV A N+ G E
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWGPGES 102
Score = 37.8 bits (88), Expect = 0.002
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 18/95 (18%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
L W PP + G I+ + V + N + ++T+ L+
Sbjct: 36 LSWRPPAEAKG-NIQTFTVFFSREGDN----RERALNTTQPGS------LQLTVGNLKPE 84
Query: 581 DTAQYTVTATNSQGK----DQVFIEVVVTDKPSAP 611
+ V A N G + V T S P
Sbjct: 85 AMYTFRVVAYNEWGPGESSQPI---KVATQPESGP 116
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 96.1 bits (239), Expect = 7e-21
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 217 VIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGET 276
V + +P PP P + N+ E V L WK P DGG + Y ++K + G W+P ++
Sbjct: 4 VADVPEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 277 EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
T +EGL +Y+FR+ A NK G+S+P TA + + + + +
Sbjct: 63 --RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQ 118
Score = 91.4 bits (227), Expect = 2e-19
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P P I++ + V L+W PP +GGS + Y IEK+E W CA++
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYT 67
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 423
+ L G QYEFR++A NK G +P +PTAP + +
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106
Score = 88.0 bits (218), Expect = 3e-18
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
+P + NI + L W P DGG + Y +EK + G W P K+R +
Sbjct: 11 EPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTIE 70
Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMV 175
GL G +Y+FR+ A NK G+S+P E + ++ K +D + + G+
Sbjct: 71 GLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSS 130
Query: 176 RKVQHLDYNTKLGVRMAQRADAG----FYTVTAE 205
++ K Y + E
Sbjct: 131 NYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEE 164
Score = 66.4 bits (162), Expect = 2e-11
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 2/121 (1%)
Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 455
+ + + R++ +I + +V G + F VI
Sbjct: 454 RISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVK--PYGTEVGEGQSANFYCRVIASSP 511
Query: 456 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 515
P W +D + ++ + L + K D G YT+ KNS+GT + +
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Query: 516 V 516
V
Sbjct: 572 V 572
Score = 47.5 bits (113), Expect = 1e-05
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
L W PP DGG+ + Y +EK E G W R +T TI L+
Sbjct: 26 VILSWKPPALDGGSLVTNYTIEKREAMGG----SWSPCAKSR--------YTYTTIEGLR 73
Query: 579 RSDTAQYTVTATNSQGK 595
++ + A N G+
Sbjct: 74 AGKQYEFRIIAENKHGQ 90
Score = 38.7 bits (90), Expect = 0.007
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
+ + L + +TI ++ D +YTV A NS G + + + VT
Sbjct: 519 DDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 37.1 bits (86), Expect = 0.021
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 556 TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ +TI ++ D +YTV A NS G + + + VT
Sbjct: 524 KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 31.3 bits (71), Expect = 1.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
L + + D G YTV A+N G V + V
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 29.8 bits (67), Expect = 3.4
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 602 VVVTDKPSAPEGPIQWLLTLTDVT--WEISNYLQELHSSLMPISLESQYLMNDKRVTIDN 659
V +P P PI + V W+ S + ++E + M
Sbjct: 4 VADVPEPEPPRFPIIENILDEAVILSWKPPALDG--GSLVTNYTIEKREAMGGSWSPCAK 61
Query: 660 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
+T TI L+ ++ + A N G+ + P P P+ I
Sbjct: 62 SR-YTYTTIEGLRAGKQYEFRIIAENKHGQSK----------PCEPTAPVLI 102
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 95.5 bits (237), Expect = 9e-21
Identities = 44/347 (12%), Positives = 93/347 (26%), Gaps = 55/347 (15%)
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-E 459
+G S+ + A K P ++ + +R G F +
Sbjct: 188 VDQEGK-SVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYST 245
Query: 460 WLCNDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
W + ++++ + L + ++ DSG++ N++G+ T +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Query: 515 TVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--------------IKWIRTN--- 557
V+ I + + + G+ + +WI N
Sbjct: 306 EVVD------KGF----INIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTF 355
Query: 558 -------DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
K N+ Y +++ + L+ ++ YT +NS + V V KP
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI 415
Query: 611 PEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVD 661
L + W ++ S+ S+ +
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSA----SVLPVDVQTLNSSGPPFGK 471
Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ +I A N GK + P
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
Score = 76.2 bits (187), Expect = 1e-14
Identities = 38/313 (12%), Positives = 79/313 (25%), Gaps = 63/313 (20%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
+ + ++ + P T L + + D K+ + +
Sbjct: 122 RSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--- 550
+V G + K + P+ G+
Sbjct: 181 RLCLHCSVDQE-GKSVLSEKFIL-------KVRPAFKAVPVVSVSKASYLLREGEEFTVT 232
Query: 551 -----------IKWIR------TNDKRVTIDNVDYFTKI----TIRPLQRSDTAQYTVTA 589
W R +K + + D+ + TI + +D+ + A
Sbjct: 233 CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292
Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLL-------------------TLTDVTWEISN 630
N+ G V + V DK P+ W N
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
+ + + + N+ Y +++ + L+ ++ YT +NS
Sbjct: 353 ---------RTFTDKWEDYPKSENE--SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Query: 691 QVFIEVVVTDKPS 703
+ V V KP
Sbjct: 402 AIAFNVYVNTKPE 414
Score = 62.4 bits (151), Expect = 3e-10
Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 52/320 (16%)
Query: 416 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI 475
P ++ + P I+ SD+ VR G G +W +
Sbjct: 27 PSVSPGEPSPPSIH-PGKSDLIVRVGDEIRLLCTDPGFV----KWT--------FEILDE 73
Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
N++K + ++ ++G YT K+ + V V + + G
Sbjct: 74 TNENKQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYGKEDN 130
Query: 536 YYMVEKMETDTGKVLIKWIRTNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNS 592
+V TD K + D D I I+ ++R+ + +
Sbjct: 131 DTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ 190
Query: 593 QGKDQVFIEVVVTDKPSAPEGPIQWL------------LTLT----------DVTWEISN 630
+GK + + ++ +P+ P+ + T+T TW+ N
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKREN 250
Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
+L +TI + + +D+ + A N+ G
Sbjct: 251 SQTKLQEKYNSWHHGDFNYERQATLTISSA-----------RVNDSGVFMCYANNTFGSA 299
Query: 691 QVFIEVVVTDKPSAPEGPIQ 710
V + V DK P+
Sbjct: 300 NVTTTLEVVDKGFINIFPMI 319
Score = 44.3 bits (104), Expect = 1e-04
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 11/140 (7%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----PPGGPLK 231
++ Y ++L + + + G YT N + ++ V V KP
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425
Query: 232 VSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGL 288
+ A G T+DW + + + P G+ V ++
Sbjct: 426 LQ-CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL---VVQSSIDSS 481
Query: 289 IPNHKYKFRVRAVNKQGKSE 308
H +A N GK+
Sbjct: 482 AFKHNGTVECKAYNDVGKTS 501
Score = 42.7 bits (100), Expect = 4e-04
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-E 238
+ + L + A+ D+G + A N G +V + V+DK P+ + V +
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327
Query: 239 GVTLDWKV 246
G +D V
Sbjct: 328 GENVDLIV 335
Score = 39.3 bits (91), Expect = 0.004
Identities = 7/48 (14%), Positives = 10/48 (20%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
+ + + G A N GK S P
Sbjct: 471 KLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
Score = 32.7 bits (74), Expect = 0.51
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSN 234
+ + + + A+ + G YT T ++ + V V D +
Sbjct: 70 ILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN---SIYVFVRDPAKLFLVDRSLYG 126
Query: 235 VHAEGVTLDWKVPD 248
+ + D
Sbjct: 127 KEDNDTLVRCPLTD 140
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 85.4 bits (211), Expect = 4e-20
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 13/104 (12%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK------------YSPIWE 372
P P + + V L W P N G PIV + ++ +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
K G + V DL + Y FR+LAV + S+ +A
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105
Score = 74.2 bits (182), Expect = 4e-16
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEATGRWTPAGET----- 276
PP P V+ + E V L W VP + G PI + V +M W +
Sbjct: 3 TYPPTPP-NVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 277 ------EGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
G V L P H Y+FR+ AV ++
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
Score = 68.0 bits (166), Expect = 5e-14
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD--------------PETGVW 101
P P V+ + + L+W P++ G P+ + V+ P
Sbjct: 4 YPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 102 IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ VT L P H Y+FR+ A+ +++
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE 99
Score = 39.1 bits (91), Expect = 6e-04
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTND-----KRVTIDNVDYFTKIT 573
L+W P + G PI + V+ K W TND K + +
Sbjct: 19 VMLRWMVPRN-DGLPIVIFKVQYRMVGKRK---NWQTTNDNIPYGKPKWNSELGKSFTAS 74
Query: 574 IRPLQRSDTAQYTVTATNSQGK 595
+ L+ T ++ + A S
Sbjct: 75 VTDLKPQHTYRFRILAVYSNND 96
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 87.9 bits (218), Expect = 5e-20
Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 30/204 (14%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKI-VNDDKS 481
++P+ +L ++ VR SN V G P P +W II+ +++I
Sbjct: 3 MAPHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
+L + D+ +Y + N G+ GTA + V P + P +
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEV------PAKIH--LPKTLEGMGA 113
Query: 542 METDTGKVL-------------IKWIR-----TNDKRVTI-DNVDYFTKITIRPLQRSDT 582
+ G+V+ I W + N+ + + + + ++R D
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDA 173
Query: 583 AQYTVTATNSQGKDQVFIEVVVTD 606
Y V A N G DQ +E+ V D
Sbjct: 174 GFYVVCAKNRFGIDQKTVELDVAD 197
Score = 70.9 bits (174), Expect = 3e-14
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 478
AK P + + G I G+P P W I + ++++
Sbjct: 98 VPAKIHLPKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156
Query: 479 -DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
++ + +R D+G Y + KN +G D+ T ++ V
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
Score = 62.0 bits (151), Expect = 4e-11
Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 48/180 (26%)
Query: 551 IKWIRTNDKRVTIDNVDY--------FTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFI 600
+KW R K + D + Y + ++ I + D Y V ATN G +
Sbjct: 36 VKWYR-QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 601 EVVVTDKPSAPEGPIQWLLTLT-------------------DVTWEISNYLQELHSSLMP 641
EV V K P+ ++ + + +TW
Sbjct: 95 EVEVPAKIHLPK-TLEGMGAVHALRGEVVSIKIPFSGKPDPVITW--------------- 138
Query: 642 ISLESQYLMNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
+ N+ + + + + ++R D Y V A N G DQ +E+ V D
Sbjct: 139 -QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 40.9 bits (96), Expect = 5e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+ + + +R DAGFY V A+N G D VE+ V D
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 35.9 bits (83), Expect = 0.022
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP 225
L + DA Y V A N G S + V
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI 102
Score = 35.9 bits (83), Expect = 0.024
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 651 NDKRVTIDNVDY--------FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
K + D + Y + ++ I + D Y V ATN G + V
Sbjct: 41 QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPA 100
Query: 703 S 703
Sbjct: 101 K 101
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 92.7 bits (230), Expect = 9e-20
Identities = 81/556 (14%), Positives = 142/556 (25%), Gaps = 105/556 (18%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNV 235
++Q + N L + R D Y +N S V + VL P P ++
Sbjct: 156 RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215
Query: 236 HA-EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKY 294
+ E + L P A W G + L + + N+
Sbjct: 216 RSGENLNLSCHAA----SNP----------PAQYSWFVNGTFQQSTQELFIPNITVNNSG 261
Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS 354
+ +A N TT +I +P D D V L
Sbjct: 262 SYTCQAHNSDTGLN-RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL-----TCEPEI 315
Query: 355 PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGEP 410
Y+ + P+ + + + L + + N+
Sbjct: 316 QNTTYLWWVNNQSLPVSPRLQLSND----NRTL-TLLSVTRNDVGPYECGIQNELSVDH- 369
Query: 411 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 470
SDP ++ P S R G N + P WL +
Sbjct: 370 SDPVILNV----LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Query: 471 DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG 530
I N +SG+YT NS T T+ + P+
Sbjct: 426 QELFISN-----------ITEKNSGLYTCQANNSASGHSRTTVKTITVSA---ELPKPSI 471
Query: 531 GAPIEYYMVEKM------ETDTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRS 580
+ + +K E + W N + + + + +T+ + R+
Sbjct: 472 SSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV-NGQSLPVSPRLQLSNGNRTLTLFNVTRN 530
Query: 581 DTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGPIQWL-------LTLT---------D 623
D Y NS ++ + + V P P L L+
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQ 590
Query: 624 VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 683
+W I+ Q+ L I + ++ Y
Sbjct: 591 YSWRINGIPQQHTQVL---------------------------FIAKITPNNNGTYACFV 623
Query: 684 TNSQGKDQVFIEVVVT 699
+N I +T
Sbjct: 624 SNLATGRNNSIVKSIT 639
Score = 84.6 bits (209), Expect = 4e-17
Identities = 71/540 (13%), Positives = 148/540 (27%), Gaps = 59/540 (10%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEG--V 240
N L ++ + D GFYT+ + + + V + P S + V
Sbjct: 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129
Query: 241 TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
+ Q + ++ + +P + L + + N ++
Sbjct: 130 AFTCEPE----TQDAT--YLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183
Query: 301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYI 360
N + + + + P + + L+ +P Y
Sbjct: 184 QNPVS--ARRSDSVILNVLYGPDAPTISPLNTSYRSGEN-LNLSCHAA----SNPPAQYS 236
Query: 361 IEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
W + T + + ++ N + A N + T +
Sbjct: 237 ----------WFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286
Query: 421 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
P + V + W+ N+ ++ R ++ ND++
Sbjct: 287 E---PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV-NNQSLPVSPRLQLSNDNR 342
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMV 539
+ L + R D G Y ++N D + VL P+D +P Y
Sbjct: 343 T--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY------GPDDPTISPSYTYYR 394
Query: 540 EKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 592
+ W+ + + I + ++ YT A NS
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQE-----LFISNITEKNSGLYTCQANNS 448
Query: 593 QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPIS--LESQYL 649
+T P+ P V + + E + + Q L
Sbjct: 449 ASGHSRTTVKTITVSAELPK-PSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSL 507
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
R+ + N + +T+ + R+D Y NS ++ + + V P P
Sbjct: 508 PVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIIS 565
Score = 78.8 bits (194), Expect = 2e-15
Identities = 72/495 (14%), Positives = 126/495 (25%), Gaps = 70/495 (14%)
Query: 234 NVHAEG---VTLDW-KVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
VH W K DG + I YV+ G E P L ++ +I
Sbjct: 20 LVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII 79
Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVEL---AWT 346
N + + + +E T + + P + ++D D V T
Sbjct: 80 QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA--VAFTCEPET 137
Query: 347 PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY---EFRVLAVN 403
Y+ + P+ + + G + L L + ++ N
Sbjct: 138 QDAT--------YLWWVNNQSLPVSPRLQLSNG----NRTLTLFNVTRNDTASYKCETQN 185
Query: 404 KGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN 463
SD ++ + R+G N + P W N
Sbjct: 186 PVS-ARRSDSVILNVLYGPDAP----TISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN 240
Query: 464 DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW 523
S I N + +SG YT NS T T+ +
Sbjct: 241 GTFQQSTQELFIPNITVN-----------NSGSYTCQAHNSDTGLNRTTVTTITV----Y 285
Query: 524 NPPEDDGGAPIEYYMVEKMET-------DTGKVLIKWIRTNDKRVTIDNVDYFT---KIT 573
P VE + + W N + +T
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLT 345
Query: 574 IRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQWLLTL--TDVTWEISN 630
+ + R+D Y N D + + V P P + +++
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405
Query: 631 YLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD 690
+S P +L++ + I + ++ YT A NS
Sbjct: 406 ------ASNPPAQY--SWLIDGNIQQHTQE-----LFISNITEKNSGLYTCQANNSASGH 452
Query: 691 QVFIEVVVTDKPSAP 705
+T P
Sbjct: 453 SRTTVKTITVSAELP 467
Score = 75.8 bits (186), Expect = 2e-14
Identities = 48/307 (15%), Positives = 88/307 (28%), Gaps = 50/307 (16%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
P + + V F + T W N+ ++ R ++ N +++ L
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT--LT 167
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
+F+ R D+ Y +N + + + VL P+ +P+
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLY------GPDAPTISPLNTSYRS---- 217
Query: 545 DTGKVL-------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 591
G+ L W N + IT +++ YT A N
Sbjct: 218 --GENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNIT-----VNNSGSYTCQAHN 269
Query: 592 SQGKDQV--FIEVVVTDKPSAPEGPIQWLLTLTD---VTWEISNYLQELHSSLMPIS--L 644
S + V +P P + D V E +
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTC-----EPEIQNTTYLWWV 324
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPS 703
+Q L R+ + N + +T+ + R+D Y N D + + V P
Sbjct: 325 NNQSLPVSPRLQLSNDN--RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD 382
Query: 704 APEGPIQ 710
P
Sbjct: 383 DPTISPS 389
Score = 57.3 bits (138), Expect = 1e-08
Identities = 46/324 (14%), Positives = 87/324 (26%), Gaps = 81/324 (25%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-- 491
+ V G ++ + + + W + ++ V + S R
Sbjct: 7 TPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREI 66
Query: 492 --------------GDSGIYTLAVKNS-WGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
D+G YTL V S ++ T + V P+ +
Sbjct: 67 IYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYP-----ELPKPSISSN-NS 120
Query: 537 YMVEKMET-------DTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQY 585
VE + +T W N++ + + + +T+ + R+DTA Y
Sbjct: 121 KPVEDKDAVAFTCEPETQDATYLWWV-NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 586 TVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQ-------WLLTLT---------DVTWEI 628
N + + + V P AP L L+ +W +
Sbjct: 180 KCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 629 SNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
+ Q+ L I + +++ YT A NS
Sbjct: 240 NGTFQQSTQEL---------------------------FIPNITVNNSGSYTCQAHNSDT 272
Query: 689 KDQV--FIEVVVTDKPSAPEGPIQ 710
+ V +P P
Sbjct: 273 GLNRTTVTTITVYAEPPKPFITSN 296
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 91.3 bits (226), Expect = 2e-19
Identities = 35/288 (12%), Positives = 93/288 (32%), Gaps = 33/288 (11%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ + ++V ++ + V + W+ ++ + F + N + + +
Sbjct: 54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLI 551
+G Y L +++ V++ L + +V E+ + ++
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP-EPIV 171
Query: 552 KWIRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPS 609
+W+ + + + + K + L A N G++ + + P
Sbjct: 172 EWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231
Query: 610 APEGPIQWL----LTLT----------DVTWEISNY-LQELHSSLMPISLESQYLMNDKR 654
+ L + +TWE+ N L+E + M ++ ++
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 655 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ +V R+DT YT +++ + V + +K
Sbjct: 292 AFVSSV-----------ARNDTGYYTCSSSKHPSQS---ALVTIVEKG 325
Score = 84.8 bits (209), Expect = 3e-17
Identities = 43/452 (9%), Positives = 95/452 (21%), Gaps = 62/452 (13%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVT 241
+ + AG Y + ++ ++ V + +
Sbjct: 100 RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR-PYFRKMENQDA 158
Query: 242 LDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV 301
L P D + E V E + L R A
Sbjct: 159 LVCIS----ESVPEPIVEWVLCD---SQGESCKEESPAVVKKEEKVLHELFGTDIRCCAR 211
Query: 302 NKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIV---- 357
N+ G+ T +I+ ++ + + + +
Sbjct: 212 NELGREC--TRLFTIDLNQTPQTTLPQLFLKVGEP----LWIRCKAV---HVNHGFGLTW 262
Query: 358 ---GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+E+ + +T V + + + +
Sbjct: 263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS-------- 314
Query: 415 APHIARAK-KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472
A +IN + D ++ F F + P W + + + +
Sbjct: 315 --QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372
Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV--------------LG 518
D + F + + G Y +N + +
Sbjct: 373 GL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQAS 428
Query: 519 CSLKWNPPEDDGGAPIE-YYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
C P +K T ++ R + + +
Sbjct: 429 CFSDGYPL-----PSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMS-- 481
Query: 578 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
+ A NS G I +
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513
Score = 73.6 bits (180), Expect = 9e-14
Identities = 33/297 (11%), Positives = 72/297 (24%), Gaps = 41/297 (13%)
Query: 432 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD------KSTKL 484
L + ++ G + W + + + F++ +
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
V R D+G YT + +A VT++ + E Y +++ E
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE------KGFINATNSSEDYEIDQYEE 343
Query: 545 DTGKVL--------IKWIRTNDK-RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 595
V W + +D I+ + +Y A N +
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ 403
Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLES 646
+ + KP + TW+ + + + + +
Sbjct: 404 FTKMFTLNIRRKPQVLAEAS--ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWN 461
Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
+ + T+ + A NS G I +
Sbjct: 462 RKANRKVFGQWV-----SSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513
Score = 53.9 bits (129), Expect = 1e-07
Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 31/237 (13%)
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT- 546
DS G S Y + ++ LGC+L+ V+ + T
Sbjct: 21 DSSVGKSSSYPMVSESPED----------LGCALRPQSSGTV--YEAAAVEVDVSASITL 68
Query: 547 -------GKVLIKWIRTNDKRVTIDNVD----YFTKITIRPLQRSDTAQYTVTATNSQGK 595
G + W+ + + D + I + + +Y + +
Sbjct: 69 QVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN 128
Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
+ V + + E + L + S+ +E +
Sbjct: 129 YTILFTVSIRNTLLYTLRRP------YFRKMENQDALVCISESVPEPIVEWVLCDSQGES 182
Query: 656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEGPIQI 711
+ K + L A N G++ + + P + +
Sbjct: 183 CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL 239
Score = 52.0 bits (124), Expect = 5e-07
Identities = 28/167 (16%), Positives = 48/167 (28%), Gaps = 13/167 (7%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS--PPGG 228
+ + LD + + G Y AEN + + + + + KP
Sbjct: 364 RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEAS 423
Query: 229 PLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEV 285
+ S ++G + WK D E+ + R G+ T
Sbjct: 424 ASQAS-CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR-KVFGQWVSSSTLNMS 481
Query: 286 EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPE 332
E + + A N G S T + + PF GT
Sbjct: 482 E---AIKGFLVKCCAYNSLGTS---CETILLNSPGPFPFIQDGGTKH 522
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 82.5 bits (204), Expect = 3e-19
Identities = 21/108 (19%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
P P + +S L W P + G + Y + R +
Sbjct: 6 SGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTI-DFGKDD 61
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
V GL Y FR+ A N+ G E P + G
Sbjct: 62 QHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRT----PEDLSGPS 105
Score = 79.8 bits (197), Expect = 3e-18
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
PG+P T I + L W PP++ G ++GY ++ + D
Sbjct: 8 PGRP-TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ-HF 64
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
V L +G Y FR+ A N+ G GE +
Sbjct: 65 TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95
Score = 77.1 bits (190), Expect = 3e-17
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 60 PLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPV-GKTREPEMDVTGLT 118
+ +S + L+W+ PK+ G L GY ++ + + + VTGL
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLH 70
Query: 119 PGHEYKFRVKALNKEGESEPLETFSSI 145
G Y FR+ A N+ G E E
Sbjct: 71 KGTTYIFRLAAKNRAGLGEEFEKEIRT 97
Score = 45.1 bits (107), Expect = 4e-06
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
L+W+PP++ G + Y ++ D + +D+ T+ + T R
Sbjct: 23 ALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFR--- 78
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVT--DKPSAPEG 613
+ A N G + F + + T D G
Sbjct: 79 --------LAAKNRAGLGEEFEKEIRTPEDLSGPSSG 107
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 81.9 bits (202), Expect = 5e-19
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQ-TEGDTPK 383
P + V L W PPE + GY++E ++ WE G +
Sbjct: 7 GLSPPRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQG-WEVLDPAVAGTETE 64
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
V LI+ YEFR++A +PS+
Sbjct: 65 LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 71.9 bits (176), Expect = 1e-15
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 222 KPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE-TEG 278
S P V+ GV L W P+ ++ YV++ + + W G
Sbjct: 3 SGSSGLSPPRGLVAVRTPRGVLLHWDPPELVPK-RLDGYVLEG-RQGSQGWEVLDPAVAG 60
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
T L V GLI + Y+FR+ A S+P T
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 66.5 bits (162), Expect = 1e-13
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKT---REP 110
GL P L V+ G L W+ P + + L+GY++E + W + E
Sbjct: 7 GLSPPRGL-VAVRTPRGVLLHWDPP-ELVPKRLDGYVLE-GRQGSQGWEVLDPAVAGTET 63
Query: 111 EMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
E+ V GL Y+FR+ A S+P T
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSFVSDPSNT 94
Score = 37.6 bits (87), Expect = 0.002
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
A T G L W+PPE ++ Y++E + G W + + T
Sbjct: 15 VAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQG-----WEVLDPAVAGTE-----T 63
Query: 571 KITIRPLQRSDTAQYTVTATNSQG 594
++ + L + ++ + A
Sbjct: 64 ELLVPGLIKDVLYEFRLVAFAGSF 87
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 81.9 bits (202), Expect = 7e-19
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE----KYVVDKM 263
+V+ L KP PP V V + L W + + Q + ++ +++
Sbjct: 4 GSSGMEPHKVVPLSKPHPP----VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEE 59
Query: 264 DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
D + G T VEGL P YKFR++ + G+ E
Sbjct: 60 DPKMHSYGVIYT--GYATRHVVEGLEPRTLYKFRLKVTSPSGEYEY 103
Score = 80.0 bits (197), Expect = 3e-18
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEG----YLVEKYDPETGVWIPVGKTREPE 111
P V + L W+ + + + + + +E+ DP+ + +
Sbjct: 17 SKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATR 76
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDP 150
V GL P YKFR+K + GE E S R+
Sbjct: 77 HVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115
Score = 74.2 bits (182), Expect = 3e-16
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVG----YI 360
G S + KP P + +EL W ++ +
Sbjct: 1 GSSGSSGME-----PHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFS 55
Query: 361 IEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
IE+++ + G + V L Y+FR+ + G E S
Sbjct: 56 IEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVV 107
Score = 37.6 bits (87), Expect = 0.003
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 513 KVTVLGCSLKWNPPEDDGGAPIEYYMVE-KMETDTGKVLIKWIRTNDKRVTIDNVDYFTK 571
KVT L W+ + + + + +E + K + V T+
Sbjct: 26 KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK-------MHSYGVIYTGYA--TR 76
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEV-VVTDKPSAP 611
+ L+ ++ + T+ G+ + V V T + S P
Sbjct: 77 HVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 86.9 bits (214), Expect = 9e-19
Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 12/289 (4%)
Query: 141 TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY 200
T S II ++ + + + G +++ + + + A
Sbjct: 19 TASCIIKQNCS--HLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLS 76
Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
+ + +VE+ P+ P + N+ + W+ P + P +
Sbjct: 77 CSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWE-PGPETHLPTSFTLK 135
Query: 261 DKMDEATGRWTPAGETEGPVTGLE------VEGLIPNHKYKFRVRAVNKQGK--SEPLT- 311
+ + + + L+ V+A N G S L
Sbjct: 136 SFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCL 195
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIW 371
+ P +PE ++L+W P + + K ++ W
Sbjct: 196 DPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASW 255
Query: 372 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
+ + ++ L+ Y ++ + PG SD + R
Sbjct: 256 ALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Score = 39.5 bits (91), Expect = 0.003
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 8/95 (8%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPE 111
+ E + L W + + L K W VG +
Sbjct: 208 LRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQ 267
Query: 112 MDVTGLTPGHEYKFRVKALNKEGE------SEPLE 140
++ GL P Y +++ + S LE
Sbjct: 268 YELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLE 302
Score = 32.6 bits (73), Expect = 0.41
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 333 IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK------V 386
+ + T + W P P + K + + + + + G+
Sbjct: 108 LMNLTTSSLICQWEPG-PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPR 166
Query: 387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 428
L+ V A N G + K P +
Sbjct: 167 KHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPML 208
Score = 31.1 bits (69), Expect = 1.3
Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 15/127 (11%)
Query: 54 GLDPEGPLEVS---NIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP 110
G P P +S N+ +W +P + P L
Sbjct: 96 GYPPAIPHNLSCLMNLTTSSLICQW-EPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCV 154
Query: 111 E--------MDVTGLTPGHEYKFRVKALNKEG--ESEPLE-TFSSIIARDPYSKYTSVSS 159
+ L V+A N G S L ++ +P T S
Sbjct: 155 PKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPS 214
Query: 160 LDSHKRS 166
++
Sbjct: 215 PEAAPPQ 221
Score = 28.4 bits (62), Expect = 8.5
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
Query: 504 SWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-TGKVLIKWIRTNDKRVT 562
+ A L W P + + + K + L+ + +
Sbjct: 210 TMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYE 269
Query: 563 IDNVDYFTKITIR 575
+ + T T++
Sbjct: 270 LCGLLPATAYTLQ 282
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 88.0 bits (218), Expect = 9e-19
Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 37/296 (12%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKST 482
Q I G VIG+P+PT W N + R ++
Sbjct: 122 LRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
L++ + GDSG+Y + +N T A+V +L P +E
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQR-PSNVIAIEG 236
Query: 542 METD-----TG--KVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTAT 590
+ +G W+R ++ + + + Y + I + D+ YT T
Sbjct: 237 KDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 591 NSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI---SL 644
E+ V P +L +++ S ++ + +P
Sbjct: 296 YKNENISASAELTVLVPP-------WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK 348
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
++ I + I + +SD Y A N G Q +++V
Sbjct: 349 NGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 74.1 bits (182), Expect = 3e-14
Identities = 54/325 (16%), Positives = 93/325 (28%), Gaps = 63/325 (19%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITI-ISKDRFKIVNDDK 480
+ S + + SD G N + + + +P +W + + + + D K +
Sbjct: 19 RRSLHF-VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG 77
Query: 481 S---TKLKVFDSKRGDSGIYT-LAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIE 535
S + + D G+Y A G+ TAKV V G + E
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES------- 130
Query: 536 YYMVEKMETDTGKVL----------IKWIR--------TNDKRVTIDNVDYFTKITIRPL 577
+ DT + I W + D RV + + I L
Sbjct: 131 ---ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG---ALQISRL 184
Query: 578 QRSDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELH 636
Q D+ Y +A N + EV + P SN +
Sbjct: 185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY--------FLQRPSNVIAIEG 236
Query: 637 SSLM---------PISLESQYLMNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTA 683
+ P S +L ++ + + + Y + I + D+ YT
Sbjct: 237 KDAVLECCVSGYPPPSF--TWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294
Query: 684 TNSQGKDQVFIEVVVTDKPSAPEGP 708
T E+ V P P
Sbjct: 295 TYKNENISASAELTVLVPPWFLNHP 319
Score = 65.6 bits (160), Expect = 2e-11
Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 20/199 (10%)
Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 477
++ + S++ G + + V G P P+ WL + I + + +
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272
Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYY 537
+ L + + DSG YT V +A++TV PP P Y
Sbjct: 273 GGSN--LLISNVTDDDSGTYTCVVTYKNENISASAELTV------LVPPWFLNH-PSNLY 323
Query: 538 MVEKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTV 587
E M+ + +G + W++ N V + + I + +SD Y
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382
Query: 588 TATNSQGKDQVFIEVVVTD 606
A N G Q +++V
Sbjct: 383 VAENEAGNAQSSAQLIVPK 401
Score = 41.7 bits (98), Expect = 7e-04
Identities = 31/178 (17%), Positives = 52/178 (29%), Gaps = 27/178 (15%)
Query: 551 IKWIR-------TNDKRVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
IKW + D R + I + D Y A+ +
Sbjct: 54 IKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT 113
Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISN--YLQ-ELHSSLMPI------SLESQYLMND 652
V GP+++L +T + + L+ E+ MP + + D
Sbjct: 114 AKVMV-----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGD 168
Query: 653 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG-KDQVFIEVVVTDKPSAPEGPI 709
RV + + I LQ D+ Y +A N + EV + P
Sbjct: 169 SRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY 223
Score = 41.0 bits (96), Expect = 0.001
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
+ L + D+G YT N S E+ VL P
Sbjct: 274 GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPW 314
Score = 34.4 bits (79), Expect = 0.13
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+ + L + ++D GFY AEN G ++IV
Sbjct: 360 QIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 33.3 bits (76), Expect = 0.30
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 192 AQRADAGFYTVTAENING-KDSVEVEVIVLDKPSPPGGP 229
Q D+G Y +A N + E EV +L P
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 86.8 bits (214), Expect = 1e-18
Identities = 33/249 (13%), Positives = 70/249 (28%), Gaps = 13/249 (5%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLD 243
+L +R Q D+G Y+ G+ + V ++V P P V +
Sbjct: 59 GRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCE 114
Query: 244 WKVPDDDGGQPIE---KYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRV 298
W P + + A + + + Y +
Sbjct: 115 WG-PRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSM 173
Query: 299 RAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ-NGGSPIV 357
+ G T T + P T + ++ + W P N +
Sbjct: 174 CVASSVGSKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRL 232
Query: 358 GYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 417
+ + + + S + + + D G ++ ++ A + G GE S+ +
Sbjct: 233 RFELRYRAERSKTFTTW-MVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEA 291
Query: 418 IARAKKVSP 426
+ S
Sbjct: 292 MGTPWTESR 300
Score = 36.8 bits (84), Expect = 0.020
Identities = 9/101 (8%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 42 EPLEGYLVEKDRGLDPEGP-LEVSNIHKDGCTLKWNKPK--DDGGEPLEGYLVEKYDPET 98
+ + P + + ++ W P + L + + +
Sbjct: 185 KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLR-FELRYRAERS 243
Query: 99 GVW-IPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ + K + + G + +++A + G+ E
Sbjct: 244 KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEW 284
Score = 30.6 bits (68), Expect = 1.8
Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 23/173 (13%)
Query: 551 IKWIRTNDKRVTIDNVDYFT---KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
+ W+ + ++ +R +Q D+ Y+ G+ + ++V
Sbjct: 39 VHWVL-RKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVP 94
Query: 608 PSAPEGPIQWLLTLTDVT--WE-------ISNYLQELHSSLMPISLESQYLMNDKRVTID 658
P P+ L++V W + + + + + Q + +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQK 154
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGK---DQVFIEVVVTDKPSAPEGP 708
P S ++ +S G + +P P
Sbjct: 155 FSCQLAV----PEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANI 203
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 86.0 bits (212), Expect = 1e-18
Identities = 41/283 (14%), Positives = 84/283 (29%), Gaps = 10/283 (3%)
Query: 141 TFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFY 200
T ++ + ++ K ++ + + ++ +A
Sbjct: 23 TAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTIINRTASSVTFTDIASLNIQLTC 81
Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
+ ++ + +I P P L + + +W + + +
Sbjct: 82 NILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH--LETNFTL 138
Query: 261 DKMDEATGRWTPAGETEGPVTGLEVE-GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
K + AT ++ T V+ + + V A N GK K
Sbjct: 139 -KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYK 197
Query: 320 NPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQT 377
N P + + + ++L WT P I+ Y I+ + K + W T
Sbjct: 198 VKPNPPHNL-SVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDT 255
Query: 378 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
V DL +Y FR+ + + G G SD +
Sbjct: 256 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298
Score = 46.0 bits (108), Expect = 2e-05
Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 10/190 (5%)
Query: 233 SNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNH 292
SN A V + + + + ++T T VT ++ N
Sbjct: 20 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIAS--LNI 77
Query: 293 KYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNG 352
+ + + ++ +I + P P KP + + W +
Sbjct: 78 QLTCNILTFGQLEQNV---YGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGRE-- 129
Query: 353 GSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD 412
+ ++ + + A+ + T + E V A N G
Sbjct: 130 THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH 189
Query: 413 PTAPHIARAK 422
+ + K
Sbjct: 190 INFDPVYKVK 199
Score = 44.4 bits (104), Expect = 6e-05
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTG 116
+ S L W P L+ Y ++ + W + + V
Sbjct: 208 VINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTRSSFTVQD 266
Query: 117 LTPGHEYKFRVKALNKEGE------SEPLET 141
L P EY FR++ + ++G+ SE
Sbjct: 267 LKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 297
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 87.8 bits (217), Expect = 2e-18
Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 33/288 (11%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ + ++V ++ + V + W+ ++ + F + N + + +
Sbjct: 54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLI 551
+G Y L +++ V++ +L + + + + ++
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRN-TLLYTLRRPYFRKMENQDALVCISESVPEPIV 171
Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPL--QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
+W+ D + + + A N G++ + + ++
Sbjct: 172 EWVL-CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230
Query: 610 APEGPIQWL-----LTLT----------DVTWEISNYLQELHSSLMPISLESQYLMNDKR 654
P +L L + +TWE+ N + L E Y
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELEN--KALE--------EGNYFEMSTY 280
Query: 655 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
T + + + R+DT YT +++ + V + +K
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKG 325
Score = 64.7 bits (157), Expect = 4e-11
Identities = 50/434 (11%), Positives = 117/434 (26%), Gaps = 56/434 (12%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVPDDD 250
+ + Y + +E+ + + + S V +TL V
Sbjct: 22 SSVGKSSSYPMVSESPED-----LGCALRPQSSGTVYEAAAVEVDVSASITLQVLVD--- 73
Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPL 310
+ + V + + + ++ + ++ +
Sbjct: 74 -APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT-I 131
Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPI 370
T SI +P ++++ D V ++ + PE PIV +++ + S
Sbjct: 132 LFTVSIRNT-LLYTLRRPYFRKMENQDA-LVCISESVPE-----PIVEWVLCDSQGESCK 184
Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 430
E A + + L E + R A N+ G ++ +
Sbjct: 185 EESPAVVKKEE-----KVLHELFGTDIRCCARNELG-------RECTRLFTIDLNQTP-Q 231
Query: 431 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDD------KSTK 483
L + ++ G + W + + + F++ +
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
V R D+G YT + +A VT++ + E Y +++ E
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVE------KGFINATNSSEDYEIDQYE 342
Query: 544 T------DTGKVLIKWIRTNDKRVTIDNVDYF---TKITIRPLQRSDTAQYTVTATNSQG 594
I+ T ++ I+ + +Y A N
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402
Query: 595 KDQVFIEVVVTDKP 608
+ + +
Sbjct: 403 QFTKMFTLNIRSGT 416
Score = 63.5 bits (154), Expect = 1e-10
Identities = 27/282 (9%), Positives = 68/282 (24%), Gaps = 57/282 (20%)
Query: 450 VIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 507
P P EW+ D ++ +V ++ ++ +N G
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL------FGTDIRCCARNELGR 216
Query: 508 DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET-------DTG--KVLIKWIRTND 558
+ L N + ++ E + W +
Sbjct: 217 ECTRLFTIDL------NQTPQ---TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-EN 266
Query: 559 KRVTIDNVDYFT------------KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
K + N + + + R+DT YT +++ + V + +
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVE 323
Query: 607 KPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI---SLESQYLMNDKRVTIDNV 660
K I + D + + + + +++ +
Sbjct: 324 KG-----FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG- 377
Query: 661 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
I+ + +Y A N + + +
Sbjct: 378 ---YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 40.0 bits (93), Expect = 0.002
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+ LD + + G Y AEN + + + + +
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 39.7 bits (92), Expect = 0.003
Identities = 3/50 (6%), Positives = 12/50 (24%)
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ I + + +Y + + + V + +
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Score = 39.3 bits (91), Expect = 0.004
Identities = 4/54 (7%), Positives = 13/54 (24%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
+ + AG Y + ++ ++ V + +
Sbjct: 94 HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147
Score = 34.3 bits (78), Expect = 0.13
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
V R D G+YT ++ + V +++K +
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSEDYEIDQYEEF 344
Score = 29.6 bits (66), Expect = 3.4
Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 21/154 (13%)
Query: 170 CGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----- 224
C S + K ++ A N G++ + I L++
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLP 235
Query: 225 ----PPGGPLKVSNVHAEG---VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
G PL + L W++ + +E+ +M + T
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWEL----ENKALEEGNYFEMSTYST-----NRTM 286
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT 311
+ V + N + + +S +T
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT 320
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 83.2 bits (206), Expect = 2e-18
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 28/192 (14%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS 489
L + V GS F+ ++ G P+P W + I + +I D KL +
Sbjct: 11 PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
+ +SG Y+L N G TA++ V + PP + +V
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKA---ETAPPN------FVQRLQSMTVRQGSQV 121
Query: 550 L------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 592
+K+ R + I + I D+ Y+V ATNS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 593 QGKDQVFIEVVV 604
G+ E++V
Sbjct: 182 VGRATSTAELLV 193
Score = 72.4 bits (178), Expect = 9e-15
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
+A+ P + +L + VR GS + V G P P ++ + I S F+I +
Sbjct: 98 KAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG 156
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
L + ++ DSG Y++ NS G TA++ V
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 64.7 bits (158), Expect = 4e-12
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 43/174 (24%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
+ W R + V I D K+TI + ++++ +Y++ ATN G+ E++
Sbjct: 37 VSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96
Query: 604 VTDKPSAPEGPIQWLLTLT-------------------DVTWEISNYLQELHSSLMPISL 644
V + + P +Q L ++T V +
Sbjct: 97 VKAETAPPN-FVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY----------------R 139
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ + + I + I D+ Y+V ATNS G+ E++V
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 43.6 bits (103), Expect = 6e-05
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
V I D K+TI + ++++ +Y++ ATN G+ E++V + + P
Sbjct: 50 TLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN 105
Score = 42.8 bits (101), Expect = 1e-04
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
++ D KL + +A++G Y++ A N +G+ + E++V + +PP
Sbjct: 54 VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
Score = 35.9 bits (83), Expect = 0.022
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
++ L + A D+G Y+V A N G+ + E++V
Sbjct: 151 QISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 86.2 bits (213), Expect = 2e-18
Identities = 50/340 (14%), Positives = 97/340 (28%), Gaps = 66/340 (19%)
Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV 476
+ RA +V P Q + +G E G P+ W+ + ++ +R +
Sbjct: 1 MGRAAEV-PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG 59
Query: 477 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
+L+V ++ DSG Y+ + + + +VT S ED+
Sbjct: 60 P----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGV 115
Query: 536 YYMV------EKMETDTGKVL------------------IKWIRTNDKRVTIDNVDYFTK 571
E+M+ V I W++ N + ++ K
Sbjct: 116 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIK 174
Query: 572 I-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD- 623
+ + + SD YT N G + + V ++ P PI +
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQ 232
Query: 624 ---------------------VTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
+ W + + T ++
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE- 291
Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+++ + D +YT A NS G +VV
Sbjct: 292 --VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 75.8 bits (186), Expect = 6e-15
Identities = 47/247 (19%), Positives = 72/247 (29%), Gaps = 32/247 (12%)
Query: 392 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP----YINRDQLSDIKVRAGSNFEFD 447
F V + G+ D R + V A + F
Sbjct: 85 RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144
Query: 448 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWG 506
G P P+ WL N + R + L + D G YT V+N +G
Sbjct: 145 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204
Query: 507 TDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD-----TGKVL--IKWIR---T 556
+ + T + VL S P G P V + + I+W++
Sbjct: 205 SIRQTYTLDVLERSPH--RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 262
Query: 557 NDKRVTIDNVDYFTKI---------------TIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
N +V D Y T + ++ + D +YT A NS G
Sbjct: 263 NGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322
Query: 602 VVVTDKP 608
+VV
Sbjct: 323 LVVLPAE 329
Score = 38.4 bits (89), Expect = 0.006
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
L + DAG YT A N G ++VL
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 36.5 bits (84), Expect = 0.023
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
G + ++ L + +D G YT EN G + VL++
Sbjct: 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 221
Score = 31.1 bits (70), Expect = 1.3
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
L+ +RV + ++ + D+ Y+ +Q F V S +
Sbjct: 50 LVPSERVLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 79.3 bits (196), Expect = 4e-18
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P + P++ ++ W P NG + + Y +E + C G
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGS-MQIC--YCGPGLSY 63
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
++ L Y RV A++ G G S+ A
Sbjct: 64 EIKGLSPATTYYCRVQALSVVGAGPFSEVVA 94
Score = 78.9 bits (195), Expect = 6e-18
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 11/100 (11%)
Query: 223 PSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
S P +V+ A ++W+VP +G + +Y + + G GP
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRL-EWGGVEGSMQIC--YCGPG 60
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEP-----LTTTAS 315
E++GL P Y RV+A++ G T S
Sbjct: 61 LSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPS 100
Score = 72.3 bits (178), Expect = 9e-16
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLT 118
P +V+ + W P G + Y +E + G ++ GL+
Sbjct: 12 KPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLE-WGGVEGSMQICYCGPGLSYEIKGLS 69
Query: 119 PGHEYKFRVKALNKEGESEP 138
P Y RV+AL+ G
Sbjct: 70 PATTYYCRVQALSVVGAGPF 89
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 14/92 (15%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W P G + Y +E + + I + T R
Sbjct: 25 QVNWEVP-LSNGTDVTEYRLEWGGVEGSMQIC--YCGPGLSYEIKGLSPATTYYCR---- 77
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
V A + G V PS+
Sbjct: 78 -------VQALSVVGAGPFSEVVACVTPPSSG 102
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 85.7 bits (212), Expect = 5e-18
Identities = 51/300 (17%), Positives = 95/300 (31%), Gaps = 37/300 (12%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
S + VR G + W+ N+ +R + + +
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN- 158
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L + ++ D G YT V N+ K T L L+ + + IE E +
Sbjct: 159 -LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL--ILRNDGVMGEYEPKIEVQFPETV 215
Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTK--ITIRPLQRSDTAQYTV 587
+ G + I W R + K + + + + I Q+ D Y
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYEC 275
Query: 588 TATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPI-- 642
A NS+GK+ ++ +P+ W+ + D+ + + + + P
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPN-------WVQIINDIHVAMEESVFWECKANGRPKPTYR 328
Query: 643 -SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
L+ R+ I+ + I + SD Y A N G E+ V +
Sbjct: 329 WLKNGDPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 71.0 bits (174), Expect = 3e-13
Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 38/231 (16%)
Query: 397 FRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIG 452
+ + N + P P I R V P I + G+ + + +G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 512
P+PT W D I++ + + L++ + ++ D+G Y +NS G +
Sbjct: 232 NPVPTILWRRADGKPIARKA-RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 513 KVTVLGCSLKW-NPPEDDGGAPIEYYMVEKMETDTG----------KVLIKWIR-----T 556
++T W D + ++ K +W++
Sbjct: 289 QLTFYA-QPNWVQIIND----------IHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337
Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
R+ I+ + I + SD Y A N G E+ V +
Sbjct: 338 TRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 67.2 bits (164), Expect = 5e-12
Identities = 55/346 (15%), Positives = 104/346 (30%), Gaps = 87/346 (25%)
Query: 406 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRA---GSNFEFDINVIGEPIPTKEWLC 462
GPG P + S + + V G P P W
Sbjct: 1 GPGSG---------------PVF-VQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL 44
Query: 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSL 521
N + F+ D S + + + D+G Y NS+GT AK+
Sbjct: 45 NGTDVDIGMDFRYSVVDGSLLINNPNKTQ-DAGTYQCIATNSFGTIVSREAKLQFAY--- 100
Query: 522 KWNPPEDDGGAPIEYYMVEKMET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
E+ V + + +G++ WI N+ DN + ++
Sbjct: 101 ----LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF-NEYPSYQDNRRFVSQE 155
Query: 573 T----IRPLQRSDTAQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWLLTLT--- 622
T I +++SD YT TN+ +V +++ + E + +
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 623 --------------------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
+ W + PI+ +++ ++ + I N
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILW--------RRADGKPIARKARRHKSNGILEIPNF-- 265
Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
Q+ D Y A NS+GK+ ++ +P+ +
Sbjct: 266 ---------QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII 302
Score = 41.7 bits (98), Expect = 7e-04
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
G + RK + N L + Q+ DAG Y AEN GK+ + ++ +P+
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPN 297
Score = 39.4 bits (92), Expect = 0.003
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 25/177 (14%)
Query: 551 IKWIRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 604
I+W N V I + + + P + D Y ATNS G ++
Sbjct: 40 IRWKL-NGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQF 98
Query: 605 TDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDNVD 661
+ V+ + +S ++ N+ DN
Sbjct: 99 AYLENFKTRTRS------TVSVRRGQGMVLLCGPPPHSGELSY--AWIFNEYPSYQDNRR 150
Query: 662 YFTKIT----IRPLQRSDTAQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQI 711
+ ++ T I +++SD YT TN+ +V +++ + E +I
Sbjct: 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKI 207
Score = 34.4 bits (79), Expect = 0.12
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
L + + +DAG Y AEN +G E+ V+ +
Sbjct: 346 QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
Score = 31.7 bits (72), Expect = 0.74
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 190 RMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVP 247
+ DAG Y A N G S E ++ + +V +G+ L P
Sbjct: 68 NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPP 127
Query: 248 D 248
Sbjct: 128 P 128
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 84.5 bits (209), Expect = 1e-17
Identities = 42/304 (13%), Positives = 83/304 (27%), Gaps = 51/304 (16%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+ ++ +K+ G F + P + WL N+ + +
Sbjct: 99 FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L + ++ D G Y+ + + SL I+
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYA-PSIKAKFPADT 217
Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
TG+++ IKW + D T + + I+ + D Y A
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRK-LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEA 276
Query: 590 TNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQE 634
N +G+D +++ +P + + V W
Sbjct: 277 ENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR------ 330
Query: 635 LHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 694
+ Q L + R+ + ++ L D+ Y A N G
Sbjct: 331 ----------DGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASA 376
Query: 695 EVVV 698
E+ V
Sbjct: 377 ELTV 380
Score = 67.6 bits (165), Expect = 4e-12
Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 43/202 (21%)
Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
++ +P I +D G + G P+P +W D + S K ++ +
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS----KWLSSEPL 258
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKW-NPPEDDGGAPIEYYMVE 540
L + + D G Y +N G D ++ + W + D
Sbjct: 259 --LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA-QPDWLDVITD------------ 303
Query: 541 KMETDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDT 582
E D G L ++W+R + R+ + ++ L D+
Sbjct: 304 -TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDS 358
Query: 583 AQYTVTATNSQGKDQVFIEVVV 604
Y A N G E+ V
Sbjct: 359 GMYQCVAENKHGTVYASAELTV 380
Score = 60.6 bits (147), Expect = 7e-10
Identities = 43/324 (13%), Positives = 81/324 (25%), Gaps = 68/324 (20%)
Query: 426 PYINRDQLSDIKVRAGSNFE---FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
P +Q + GS E P T W N + +
Sbjct: 5 PVF-EEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
+ K D+G Y N+ GT A + ++ + + +
Sbjct: 64 -VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF-------LQEFSAEERDPVKITE 115
Query: 542 MET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKIT-----IRPLQRSDTAQYTV 587
+ +W+ + F T I + SD Y+
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC 175
Query: 588 TATNSQGKDQ-----VFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM-- 640
AT+ F ++ + + + P D +
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY-------ALTGQMVTLE 228
Query: 641 --------PI--------SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
P S S++L ++ + I NV D Y A
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNV-----------DFEDEGTYECEAE 277
Query: 685 NSQGKDQVFIEVVVTDKPSAPEGP 708
N +G+D +++ +P +
Sbjct: 278 NIKGRDTYQGRIIIHAQPDWLDVI 301
Score = 60.3 bits (146), Expect = 9e-10
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
P D ++D + GS+ + G+P P WL + + S++R ++ +
Sbjct: 292 HAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE--- 347
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
L+ DSG+Y +N GT +A++TV
Sbjct: 348 -LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 40.6 bits (95), Expect = 0.001
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
+ L L ++ D G Y AENI G+D+ + +I+ +P
Sbjct: 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD 296
Score = 36.0 bits (83), Expect = 0.039
Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 40/183 (21%)
Query: 551 IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVV 604
+W N + + + + P++ D Y ATN++G +
Sbjct: 39 YRWKM-NGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF 97
Query: 605 TDKPSAPEGPIQWL-------LTLT----------DVTWEISNYLQELHSSLMPISLESQ 647
+ + T W ++ + + +
Sbjct: 98 GFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA---------- 147
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
+ +R + I + SD Y+ AT+ + + A E
Sbjct: 148 ---DGRRFVSQTT---GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED 201
Query: 708 PIQ 710
Q
Sbjct: 202 ARQ 204
Score = 32.5 bits (74), Expect = 0.51
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
+L D+G Y AEN +G E+ V
Sbjct: 345 GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 29.4 bits (66), Expect = 4.4
Identities = 12/61 (19%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 190 RMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVP 247
+ DAG Y A N G S E + + GV P
Sbjct: 67 NPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPP 126
Query: 248 D 248
Sbjct: 127 P 127
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 78.1 bits (193), Expect = 1e-17
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 305 GKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKK 364
G S + +E + PG + + W P G I Y +
Sbjct: 1 GSSGS---SGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56
Query: 365 EKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
EK + + + + + L + +Y FRV+A NK GPG +
Sbjct: 57 EKGTDKEQD---VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
Score = 64.3 bits (157), Expect = 1e-12
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 209 GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
S VE P P L+ +T+ W+ P G I+ Y + M++ T
Sbjct: 3 SGSSGRVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGT 60
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ + + + GL +Y FRV A NK G
Sbjct: 61 DKEQ---DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVS 99
Score = 60.8 bits (148), Expect = 2e-11
Identities = 20/78 (25%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
L T+ W P GE Y + + T V + GL
Sbjct: 24 LRAYAASPTSITVTWETPVSGNGEIQ-NYKLYYMEKGTDKEQDV-DVSSHSYTINGLKKY 81
Query: 121 HEYKFRVKALNKEGESEP 138
EY FRV A NK G
Sbjct: 82 TEYSFRVVAYNKHGPGVS 99
Score = 38.5 bits (90), Expect = 0.001
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
++ W P G I+ Y + ME T K + + + TI+ + +T+ + R
Sbjct: 35 TVTWETPVSGNG-EIQNYKLYYMEKGTDKE--QDVDVSSHSYTINGLKKYTEYSFR---- 87
Query: 580 SDTAQYTVTATNSQG 594
V A N G
Sbjct: 88 -------VVAYNKHG 95
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 78.2 bits (193), Expect = 2e-17
Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 300 AVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
+ + G P + I + + PG P + T V L W PP G I+ Y
Sbjct: 5 SSGRIGDGSP--SHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61
Query: 360 IIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
I + + + L + Y FR+ A + G GE ++
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Score = 70.1 bits (172), Expect = 1e-14
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 201 TVTAENINGKDSVEVEVIVL----DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
+ + G S I+ D P PP G + V V L W+ P G +
Sbjct: 2 SSGSSGRIGDGSPSHPPILERTLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILA 60
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ +++ T GL P Y FR+ A ++G E
Sbjct: 61 YQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEA 113
Score = 57.8 bits (140), Expect = 3e-10
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR--EPEMDVTGLT 118
+ + L W P G L + + + T V + TGL
Sbjct: 34 ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLK 93
Query: 119 PGHEYKFRVKALNKEGESEPLETFSSI 145
P Y FR+ A ++G E E
Sbjct: 94 PESVYLFRITAQTRKGWGEAAEALVVT 120
Score = 39.3 bits (92), Expect = 7e-04
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L W PP G + Y + ++ T T + + T L+
Sbjct: 45 RLIWQPPAAPNGIILAYQITHRLNTTTA----NTATVEVLAPSA------RQYTATGLKP 94
Query: 580 SDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
+ +TA +G + VV T+K S P
Sbjct: 95 ESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 80.4 bits (198), Expect = 2e-17
Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 10/201 (4%)
Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
PP P L + + +W + + + K + AT ++ T
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTL-KSEWATHKFADCKAKRDTPTS 63
Query: 283 LEVE-GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
V+ + + V A N GK K N P + + + +
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNL-SVINSEELSSIL 122
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGNQYEFRV 399
+L WT P I+ Y I+ + K + W T V DL +Y FR+
Sbjct: 123 KLTWTNPSI-KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 181
Query: 400 LAVNKGGPGEPSDPTAPHIAR 420
+ + G G SD +
Sbjct: 182 RCMKEDGKGYWSDWSEEASGI 202
Score = 56.9 bits (137), Expect = 3e-09
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 201 TVTAENINGK---DSVEVEVIVLDKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIE 256
V AEN GK D + + + KP+PP + S + + L W P +
Sbjct: 79 WVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL- 137
Query: 257 KYVVDKMDEATGRWT--PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK------SE 308
KY + + W+ P +T + V+ L P +Y FR+R + + GK SE
Sbjct: 138 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 197
Query: 309 PLTTT 313
+
Sbjct: 198 EASGI 202
Score = 41.9 bits (98), Expect = 3e-04
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG----KTREPEMDVTG 116
+ S L W P L+ Y ++ + W + + V
Sbjct: 112 VINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTRSSFTVQD 170
Query: 117 LTPGHEYKFRVKALNKEGESE 137
L P EY FR++ + ++G+
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGY 191
Score = 40.7 bits (95), Expect = 7e-04
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 12/120 (10%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P KP + + W + + ++ + + A+ + T
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCT 65
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIARAKKVSPYINRDQLS 434
+ E V A N G P PH + +L+
Sbjct: 66 VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLT 125
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 76.2 bits (188), Expect = 5e-17
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 406 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 465
GPG P P I SDI + G GEP P W C
Sbjct: 1 GPGIP-----PKIEAL-----------PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGR 44
Query: 466 TIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
I S++ RF I N D T L + D ++ D G+YTL++ N +G+D T + +
Sbjct: 45 KIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
+ W R I+N D T + I +Q+ D YT++ N G D + +
Sbjct: 37 VTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
Query: 604 VTD 606
+
Sbjct: 97 IRS 99
Score = 43.8 bits (104), Expect = 1e-05
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
R I+N D T + I +Q+ D YT++ N G D + + +
Sbjct: 50 EQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+++ D T L + Q+ D G YT++ N G DS V + +
Sbjct: 55 HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 76.7 bits (188), Expect = 8e-17
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Query: 416 PHIARAKKVSPYINRDQLS----DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-- 469
H +++ P I+ D I V AG+ D+ + G+P PT W
Sbjct: 4 HHHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP 63
Query: 470 ---------------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502
+ R ++ + V +++ D G+YT+ VK
Sbjct: 64 ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Query: 503 NSWGTDKGTAKVTVL 517
N G D+ V V+
Sbjct: 124 NPVGEDQVNLTVKVI 138
Score = 57.8 bits (139), Expect = 3e-10
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
K + + RV ++ + T+ ++ D YTVT N G+DQV + V V D
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 57.5 bits (138), Expect = 5e-10
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 596 DQVFIEVVVTDKPSAPEGPIQWL----LTLTDVTWEISNYLQELHSSLMPISLESQYLMN 651
+++ ++V ++ P AP + W + ++ S + +
Sbjct: 34 NKLRLDVPISGDP-APT--VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 90
Query: 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
+ RV ++ + T+ ++ D YTVT N G+DQV + V V D
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 50.9 bits (121), Expect = 7e-08
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+V+ + V A++ D G YTVT +N G+D V + V V+D
Sbjct: 95 RVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 76.1 bits (187), Expect = 1e-16
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---------- 260
S + L P+PP ++ + +T+ W D I Y +
Sbjct: 4 GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWI---SDDEFSISSYELQYTIFTGQAN 60
Query: 261 -DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ + W + V GL +Y F V+A+N+ G T ++
Sbjct: 61 FISLYNSVDSWMIVPNIKQ--NHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118
Query: 320 NPFNQPGKPG 329
PF G
Sbjct: 119 -PFKSGPSSG 127
Score = 75.3 bits (185), Expect = 2e-16
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 13/126 (10%)
Query: 311 TTTASIEAKNPFNQPGKP-GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSP 369
++ +S E + P P E+ D + + W I Y ++
Sbjct: 2 SSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQ 58
Query: 370 IWEKCAQTEGD---------TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
D V L G +Y F V A+N+ G ++
Sbjct: 59 ANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQ 118
Query: 421 AKKVSP 426
K P
Sbjct: 119 PFKSGP 124
Score = 74.2 bits (182), Expect = 4e-16
Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDP-----------ETGVWIPVG 105
P E+ D T+ W D + Y ++ W+ V
Sbjct: 19 PSIREELCTASHDTITVHW---ISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVP 75
Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
++ V GL G Y F VKA+N+ G
Sbjct: 76 NIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS 108
Score = 36.4 bits (84), Expect = 0.008
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 7/94 (7%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRS 580
+ W I Y ++ I + D + + N+ T+ LQ
Sbjct: 35 VHWISD---DEFSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQ-NHYTVHGLQSG 90
Query: 581 DTAQYTVTATNSQGK---DQVFIEVVVTDKPSAP 611
+ V A N G + ++ S P
Sbjct: 91 TRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGP 124
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 79.2 bits (195), Expect = 1e-16
Identities = 42/228 (18%), Positives = 75/228 (32%), Gaps = 33/228 (14%)
Query: 411 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 470
++ AP+ +K+ V A + +F G P+PT WL N +
Sbjct: 11 NNKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63
Query: 471 DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD 529
R ++ L + D G YT V+N +G+ T + V+ S + P
Sbjct: 64 HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSR--HRPILQ 121
Query: 530 GGAPIEYYMVEKMETD-----TG--KVLIKWIRTNDKRVTIDNVDYFTKI---------- 572
G P V + + + I+WI+ +K + D +
Sbjct: 122 AGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINS 181
Query: 573 ------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ + +D +Y +N G+ + V K AP
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 62.6 bits (152), Expect = 4e-11
Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 37/187 (19%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
++W++ N K ++ K+ + + SD YT N G +
Sbjct: 51 MRWLK-NGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109
Query: 604 VTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLMP 641
V ++ PI + + W ++ S P
Sbjct: 110 VVERSRHR--PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV--EKNGSKYGP 165
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
L ++ + N + + + + +D +Y +N G+ + V K
Sbjct: 166 DGLPYLKVLKHSGINSSNAE---VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
Query: 702 PSAPEGP 708
AP
Sbjct: 223 QQAPGRE 229
Score = 44.9 bits (106), Expect = 4e-05
Identities = 13/50 (26%), Positives = 18/50 (36%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
+ L + ADAG Y N G+ + + VL K PG
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229
Score = 36.0 bits (83), Expect = 0.027
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ + + + L + +D G YT EN G + + V+++
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 74.2 bits (183), Expect = 3e-16
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
PG + + + W PP G P+ GY + E + + E D
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEVDGLSY 63
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
K+ L + +Y R LA N+ GPG +D
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 61.1 bits (149), Expect = 8e-12
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P P L+ + + + W+ P G P++ Y + + +TG+ E
Sbjct: 8 PGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEVDGLS 62
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEP 309
++EGL +Y R A N+ G
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVS 89
Score = 59.6 bits (145), Expect = 3e-11
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 56 DPEGP---LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEM 112
GP L+ + + W P G P++GY + + TG + +
Sbjct: 6 SGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLSY 63
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
+ GL EY R A N+ G
Sbjct: 64 KLEGLKKFTEYSLRFLAYNRYGPGVS 89
Score = 36.5 bits (85), Expect = 0.004
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W PP G P++ Y + E TGK I + ++ + FT+ ++R
Sbjct: 25 LITWEPPAYANG-PVQGYRLFCTEVSTGKEQN--IEVDGLSYKLEGLKKFTEYSLR---- 77
Query: 580 SDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAP 611
A N G D + VVT S P
Sbjct: 78 -------FLAYNRYGPGVSTDDI---TVVTLSDSGP 103
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 76.4 bits (188), Expect = 4e-16
Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 35/194 (18%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
LS +++ G + F IGEP + IIS R + + ++L ++++
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 492 GDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPED----DG----------GAPIEY 536
D+GIY ++ G + T + + G +P
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP--- 124
Query: 537 YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI-----TIRPLQRSDTAQYTVTATN 591
+ W+ +++ VT + + F + I + +SD Y
Sbjct: 125 -----------APAVSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRV 172
Query: 592 SQGKDQVFIEVVVT 605
+ F +++V
Sbjct: 173 EARGEIDFRDIIVI 186
Score = 52.9 bits (127), Expect = 4e-08
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 480
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++
Sbjct: 94 YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 151
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
L++ + + D GIY + + + V+
Sbjct: 152 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 52.1 bits (125), Expect = 8e-08
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 15/151 (9%)
Query: 556 TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 614
+ +RV + +++TI D Y AT+++G+ Q + + + K + E
Sbjct: 44 ISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV 103
Query: 615 IQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI-----TI 668
+ + + + SS P +L +++ VT + + F + I
Sbjct: 104 -----SPQEFKQGEDAEVVCRVSSSPAP---AVSWLYHNEEVTTISDNRFAMLANNNLQI 155
Query: 669 RPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
+ +SD Y + F +++V
Sbjct: 156 LNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 41.7 bits (98), Expect = 2e-04
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEG 707
+++ +RV + +++TI D Y AT+++G+ Q + + + K + E
Sbjct: 43 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 102
Query: 708 P 708
Sbjct: 103 V 103
Score = 34.8 bits (80), Expect = 0.058
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDK 222
+ S VQ ++L + A DAG Y A + G+ V + + K
Sbjct: 37 NPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQK 96
Query: 223 PS 224
+
Sbjct: 97 LT 98
Score = 30.1 bits (68), Expect = 1.7
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
N L + ++D G Y + ++IV+
Sbjct: 150 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 76.0 bits (187), Expect = 5e-16
Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 19/193 (9%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
+ + G F G P P W N I +++ + + L
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LT 61
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD--------------GG 531
V + D G Y N G D+ A + V +++ G
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV-QPHIIQLKNETTYENGQVTLVCDAEG 120
Query: 532 APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 591
PI ++ G + ++ D R+ + + + I+ ++ SD+ +Y A +
Sbjct: 121 EPIPEITWKR--AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 592 SQGKDQVFIEVVV 604
G Q + + +
Sbjct: 179 RIGGHQKSMYLDI 191
Score = 61.4 bits (149), Expect = 5e-11
Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 30/167 (17%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W R +++ + + T++T+R + SD Y ATN G+D+ + V
Sbjct: 36 ISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 93
Query: 606 DKP--------SAPEG-PIQWLLTLT-----DVTWEISNYLQELHSSLMPISLESQYLMN 651
+P + E + + ++TW ++ +
Sbjct: 94 VQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITW---------KRAVDGFTFTEGDKSL 144
Query: 652 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
D R+ + + + I+ ++ SD+ +Y A + G Q + + +
Sbjct: 145 DGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 52.5 bits (126), Expect = 6e-08
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-------RFKI 475
V P+I QL + + GEPIP W + R ++
Sbjct: 93 FVQPHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
S+ L + D K DSG Y + G + + + +
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 38.6 bits (90), Expect = 0.003
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
K NT+L VR +D G Y A N G+D + + V +P
Sbjct: 49 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPH 97
Score = 38.6 bits (90), Expect = 0.003
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
+ + +++ + + T++T+R + SD Y ATN G+D+ + V +P
Sbjct: 43 KLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPH 97
Score = 35.6 bits (82), Expect = 0.032
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 178 VQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
V+ ++ L ++ + +D+G Y A + G + + +
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 76.5 bits (188), Expect = 1e-15
Identities = 44/233 (18%), Positives = 78/233 (33%), Gaps = 30/233 (12%)
Query: 407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
P D AP+ R +++ + V A + F G P P+ WL N
Sbjct: 3 PDTGVDTGAPYWTRPERMDK-------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55
Query: 467 IISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCS----- 520
+ R I + L + D G YT V+N +G+ + T + VL S
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Query: 521 LKWNPPED----DG----------GAP---IEYYMVEKMETDTGKVLIKWIRTNDKRVTI 563
L+ P + G I++ ++ T K
Sbjct: 116 LQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175
Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
++V+ ++ + + D +Y ATN G + + V +A E ++
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE 228
Score = 60.3 bits (146), Expect = 2e-10
Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 36/189 (19%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
I W++ N + ++ K+ + + SD YT N G + +
Sbjct: 47 ISWLK-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
Query: 604 VTDKPSAPEGPIQWLLTLTDVT----------------------WEISNYLQELHSSLMP 641
V ++ P PI + T W +
Sbjct: 106 VLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW----LKHVEVNGSKV 159
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
+ Y+ K ++V+ ++ + + D +Y ATN G + + V
Sbjct: 160 GPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Query: 702 PSAPEGPIQ 710
+A E ++
Sbjct: 220 RAAEEELVE 228
Score = 40.3 bits (94), Expect = 0.001
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV 232
+ ++ + +L + D G Y A N G + V + ++
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEA 229
Score = 36.5 bits (84), Expect = 0.022
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
G + ++ L + +D G YT EN G + VL++
Sbjct: 58 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 113
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 75.7 bits (186), Expect = 1e-15
Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 31/188 (16%)
Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
W N I DR K + L++ + D G Y + + + + T
Sbjct: 29 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88
Query: 512 AKVTVLGCS--------LKWNPPEDDGGAPIEYYMVEKMETDTGKVL------------- 550
++ LK + A + + + + GK L
Sbjct: 89 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 148
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W + D TI + +D+ +Y + N G + V V
Sbjct: 149 VSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208
Query: 605 TDKPSAPE 612
PE
Sbjct: 209 F----IPE 212
Score = 74.9 bits (184), Expect = 2e-15
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 459
L+ A A+K + + ++ G NV G+P P
Sbjct: 91 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150
Query: 460 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
WL N+ + D + + ++ + DSG Y L VKN +G++ V+V
Sbjct: 151 WLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 39.5 bits (92), Expect = 0.002
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
+ RV + I +D +Y + + + Q +++ A
Sbjct: 44 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYA 101
Score = 37.2 bits (86), Expect = 0.009
Identities = 8/49 (16%), Positives = 16/49 (32%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
+ + AD+G Y + +N G ++ + V V
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 33.7 bits (77), Expect = 0.15
Identities = 6/57 (10%), Positives = 13/57 (22%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS 233
K L + D G Y + + V++ ++
Sbjct: 51 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 72.0 bits (177), Expect = 1e-15
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
++ I + + V G + F + GEP+PT WL + + R ++ +
Sbjct: 12 TLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
++ + D G Y++ V+NS G + +T+
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 43.9 bits (104), Expect = 9e-06
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W+R + R + Y + I +Q SD Y+V NS+GK + + +
Sbjct: 46 VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 42.3 bits (100), Expect = 3e-05
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
L R + Y + I +Q SD Y+V NS+GK + + +
Sbjct: 55 LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+V Y + + Q +D G Y+V EN GK E + +
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 74.9 bits (184), Expect = 2e-15
Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 31/214 (14%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS- 481
+ P R D +G F G+P P W + ++ I DD S
Sbjct: 4 ETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 482 TKLKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAP-IEYYMV 539
+ L++ + D IY N+ G + ++TVL + G P I+
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLR------EDQIPRGFPTIDMGPQ 116
Query: 540 EKMETDTGKVL------------IKWIR--------TNDKRVTIDNVDYFTKITIRPLQR 579
K+ T I W + N+ R+ + + I +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 580 SDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPE 612
SD +Y ATNS G + V
Sbjct: 177 SDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210
Score = 56.4 bits (136), Expect = 4e-09
Identities = 31/186 (16%), Positives = 54/186 (29%), Gaps = 43/186 (23%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVV 603
I W + V + + + I+PL+ D A Y A+N+ G+ V +
Sbjct: 38 IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 604 VTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLMP 641
V + P G + +TW +P
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDF---------LP 148
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTD 700
+ + N+ R+ + + I + SD +Y ATNS G + V
Sbjct: 149 VDTSN----NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRG 204
Query: 701 KPSAPE 706
Sbjct: 205 TKHHHH 210
Score = 36.7 bits (85), Expect = 0.012
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
D Y A N G+ SV + VL + P G
Sbjct: 75 DEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108
Score = 36.7 bits (85), Expect = 0.014
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIVLDKPSPP 226
K + L + ++ +D G Y A N G + S + V
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 35.9 bits (83), Expect = 0.023
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI 709
V + + + I+PL+ D A Y A+N+ G+ V + V + P G
Sbjct: 50 QRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFP 109
Query: 710 QI 711
I
Sbjct: 110 TI 111
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 71.2 bits (175), Expect = 3e-15
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
L D V + S +F + GEP PT W + I ++K+ D L++ +
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
DSG+YT VKNS G+ + K+T+
Sbjct: 73 DSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
W + T + + + I SD+ YT T NS G ++ +
Sbjct: 38 AIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ + + + I SD+ YT T NS G ++ +
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 33.4 bits (77), Expect = 0.042
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
L + +D+G YT T +N G S ++ +
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 70.9 bits (174), Expect = 3e-15
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
+ P G L ++V + + + W+ P + +Y V G +G
Sbjct: 1 NIDRPKG--LAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEE 54
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
E++GL P +Y V A++ +S+PL T S
Sbjct: 55 DTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQS 89
Score = 65.9 bits (161), Expect = 1e-13
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEM 112
+D L +++ D + W P+ + Y V PE G+ P E
Sbjct: 2 IDRPKGLAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
++ GL PG EY V AL+ + ES+PL
Sbjct: 58 ELQGLRPGSEYTVSVVALHDDMESQPLIG 86
Score = 49.7 bits (119), Expect = 7e-08
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P D D D +++AW P+ + Y + I E +G+ ++
Sbjct: 5 PKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQ 60
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
L G++Y V+A++ +P T
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQ 88
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 71.0 bits (174), Expect = 3e-15
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
P PP L ++ V V L W+ Y+V + E +
Sbjct: 6 SGPLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGR 60
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
+ ++GL P Y+ V+++ SE A P +
Sbjct: 61 PEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGPSS 103
Score = 59.5 bits (144), Expect = 4e-11
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPEM 112
L P L ++ + L W YLV + PE+
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGRPEV 63
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ GL PG +Y+ V++L SE
Sbjct: 64 LLDGLEPGRDYEVSVQSLRGPEGSEARGI 92
Score = 51.8 bits (124), Expect = 2e-08
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P + V L W P + Y++ E+ + + P+ +
Sbjct: 12 PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
L G YE V ++ E A
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSEARGIRA 94
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 70.9 bits (174), Expect = 3e-15
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+L PP +KV+N+ + W+ P PIE +V + +
Sbjct: 1 MLQ---PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTS 52
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLT---TTASIEAKN 320
+T L + L PN Y+ R+ A N Q S P++ TT S+E +
Sbjct: 53 SITSLTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLEHHH 97
Score = 65.1 bits (159), Expect = 3e-13
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG--KTREPEM 112
L P ++V+NI + W P P+EG LV + +
Sbjct: 2 LQPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSL 57
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEPLET 141
+T L P Y+ R+ A N + S P+ T
Sbjct: 58 TLTNLEPNTTYEIRIVARNGQQYSPPVST 86
Score = 62.8 bits (153), Expect = 2e-12
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P ++ + + W PP PI G ++ K P E +
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLT 60
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+L YE R++A N P T
Sbjct: 61 NLEPNTTYEIRIVARNGQQYSPPVSTT 87
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 77.6 bits (190), Expect = 4e-15
Identities = 61/424 (14%), Positives = 117/424 (27%), Gaps = 56/424 (13%)
Query: 36 PKDDGGEPLEGY-LVEKDRGLDPEGP--LEVS-NIHKDGCTLKWNKPKDDGGEPLE-GYL 90
D G + L E++ L P+ P L++S + LKWN +
Sbjct: 63 SLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWE 122
Query: 91 VEKYDPETGVWIPVGKTREPEMDVTGLT----------PGHEYKFRVKALNKEGESE--- 137
++ E+ + + + L + ++
Sbjct: 123 IKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLE 182
Query: 138 ------PLETFSSIIARDPYSKYTSV-----SSLDSHKRSNQPCGSGMVRKV----QHLD 182
P++ S I S + S + S ++ HLD
Sbjct: 183 EWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLD 242
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
+ +++ + + + + P P L + +
Sbjct: 243 GEN-VAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIIC 300
Query: 243 DWKVPDDDG--GQPIEKYVVDKMDEATGRWTPAGETEGPVTG---LEVEGLIPNHKYKFR 297
W G Y + + G++ E P L + L Y F
Sbjct: 301 SWNPGRVTALVGPRATSYTLVESFS--GKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFT 358
Query: 298 VRAVNKQGKSE--PLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP 355
+ A N G+S+ L P P + ++KD ++ V+L+W P N
Sbjct: 359 LNAHNPLGRSQSTILVNITEKV------YPHTPTSFKVKDINSTAVKLSWHLPG-NFAKI 411
Query: 356 IVGYIIEKKEKYSPIWEKCAQTEGDTPK---GKVLDLIEGNQYEFRVLAV--NKGGPGEP 410
IE K+ S ++ +G + L Y FR+ +
Sbjct: 412 NFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKW 471
Query: 411 SDPT 414
S+
Sbjct: 472 SNKK 475
Score = 75.6 bits (185), Expect = 1e-14
Identities = 68/429 (15%), Positives = 120/429 (27%), Gaps = 69/429 (16%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
LK + + WK P G + +++ R + E T +++ L
Sbjct: 2 LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLE--KTSIKIPALS 53
Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK----DFDTDFVELAW 345
Y+ + +++ G S T N N P TPEI DF T + L W
Sbjct: 54 HGD-YEITINSLHDFGSSTSKFT------LNEQNVSLIPDTPEILQLSADFSTSTLYLKW 106
Query: 346 T--PPEQNGGSPIVGYI-IEKKEKYSPIWEKCAQTEGDTPKG------KVLDLIEGNQYE 396
S ++ I + +KE + QT + +E +
Sbjct: 107 NDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHF 166
Query: 397 FRVLAVNKG----GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 452
+ G E SD + + + D + GS+ F
Sbjct: 167 VEIRCYIDNLHFSGLEEWSDWSPVKQISW--IPDSQTKVFPQDKVILVGSDITFCCVSQE 224
Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT- 511
+ + N I + + S + + N +GT
Sbjct: 225 KVLSALIGHTNCPLIHLDGENVAI-----KIRNISVSASSGTNVVFTTEDNIFGTVIFAG 279
Query: 512 ---AKVTVLGC--------SLKWNPPEDDG--GAPIEYYMVEKMETDTGKVLIKWIRTND 558
L C WNP G Y + + +
Sbjct: 280 YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKY--------VRL 331
Query: 559 KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGPIQ 616
KR + + + + L + +T+ A N G+ Q I V +T+ P P
Sbjct: 332 KRAEAPTNESYQ-LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTS--- 387
Query: 617 WLLTLTDVT 625
+ D+
Sbjct: 388 --FKVKDIN 394
Score = 59.9 bits (144), Expect = 2e-09
Identities = 58/398 (14%), Positives = 112/398 (28%), Gaps = 49/398 (12%)
Query: 340 FVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
+ +W P G IE++ C Q E + K+ L G YE +
Sbjct: 11 VWQCSWKAPSGTGRGTDYEVCIEQR------SRSCYQLEKTSI--KIPALSHG-DYEITI 61
Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYI----NRDQLSDIKVR---------AGSNFEF 446
+++ G +P I S + ++ SN +
Sbjct: 62 NSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIW 121
Query: 447 DINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDKSTKLKV---FDSKRGDSGIYTLAVK 502
+I V+ + L T+ KD + L+ F R +
Sbjct: 122 EIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGL 181
Query: 503 NSWGTDKGTAKVTVLGCSLKWNPPED---DGGAPIEYYMVEK---METDTGKVLIKWIRT 556
W +++ + S P+D G+ I + V + + G I
Sbjct: 182 EEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHL 241
Query: 557 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 616
+ + V I+ S +A + + + P P+
Sbjct: 242 DGENV-----------AIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 617 WLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY----FTKITIRPLQ 672
L ++ + S + K V + + ++ + L
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLP 350
Query: 673 RSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGP 708
+ +T+ A N G+ Q I V +T+ P P
Sbjct: 351 NQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSF 388
Score = 57.9 bits (139), Expect = 6e-09
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 201 TVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE-- 256
T+ A N G+ + V + + P P KV ++++ V L W +P +
Sbjct: 358 TLNAHNPLGRSQSTILVNITEKVYPHTPTS-FKVKDINSTAVKLSWHLPGNFAKINFLCE 416
Query: 257 -KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK-----SEPL 310
+ + T G E + ++ L P Y FR+R + S
Sbjct: 417 IEIKKSNSVQEQRNVTIQG-VENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKK 475
Query: 311 TTT 313
Sbjct: 476 QHL 478
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 76.5 bits (188), Expect = 5e-15
Identities = 49/313 (15%), Positives = 84/313 (26%), Gaps = 68/313 (21%)
Query: 431 DQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKD-------RFKIVNDDKST 482
+ + G F+ D + P P W R D
Sbjct: 105 AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
V D Y KN+ ++ + K N G P+ Y+ + M
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK--GEPVPQYVSKDM 222
Query: 543 ETDTGKVL-------------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDT 582
G V + + + R+T N ++ + D
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 282
Query: 583 AQYTVTATNSQGKDQVF-IEVVVTDKPSAPEGPIQWL-------LTLT---------DVT 625
YT N GK Q +++ V P + P + + +T+ +V
Sbjct: 283 GVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVV 342
Query: 626 WEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685
W + P+S + D+ + I+ ++ D Y ATN
Sbjct: 343 WSHNA---------KPLS-------GGRATVTDSG-----LVIKGVKNGDKGYYGCRATN 381
Query: 686 SQGKDQVFIEVVV 698
G V V
Sbjct: 382 EHGDKYFETLVQV 394
Score = 70.7 bits (173), Expect = 4e-13
Identities = 40/245 (16%), Positives = 71/245 (28%), Gaps = 42/245 (17%)
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRA 440
V + Y++ A N E K S + + D+ +A
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226
Query: 441 GSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
G P+ + N + +DR N +L + D G+YT
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYT 286
Query: 499 LAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL------- 550
V N G + + K+TV+ P+ E + + G+ +
Sbjct: 287 CEVDNGVGKPQKHSLKLTVVS------APK------YEQKPEKVIVVKQGQDVTIPCKVT 334
Query: 551 ------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF 599
+ W + + D+ + I+ ++ D Y ATN G
Sbjct: 335 GLPAPNVVWSHNAKPLSGGRATVTDSG-----LVIKGVKNGDKGYYGCRATNEHGDKYFE 389
Query: 600 IEVVV 604
V V
Sbjct: 390 TLVQV 394
Score = 67.2 bits (164), Expect = 6e-12
Identities = 50/325 (15%), Positives = 93/325 (28%), Gaps = 52/325 (16%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 481
P + +DQ +++ R + + + G K W + + ++ + D+
Sbjct: 4 DKYPVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPED------------ 528
+ L + D G Y + G +
Sbjct: 63 S-LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLD 121
Query: 529 ---DGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTI--DNVDYFTKITIRPLQRSDTA 583
P +K +G + D+R+T D YFT +T SD
Sbjct: 122 CVLPNAYPKPLITWKK--RLSGADPNADVTDFDRRITAGPDGNLYFTIVT--KEDVSDIY 177
Query: 584 QYTVTATNSQGKDQV----FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSL 639
+Y TA N+ ++V + VT S +G D+ +
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMM-------AKAGDVT 230
Query: 640 ----------MPI---SLESQYLMND--KRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
M + + + R+T N ++ + D YT
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 685 NSQGKDQVF-IEVVVTDKPSAPEGP 708
N GK Q +++ V P + P
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKP 315
Score = 62.6 bits (152), Expect = 1e-10
Identities = 60/367 (16%), Positives = 94/367 (25%), Gaps = 67/367 (18%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
L Q +D G Y AE G S + + P + + + L
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 243 DWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE--------VEGLIPNHKY 294
D +P+ P K + + +T V + Y
Sbjct: 121 DCVLPN---AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV------------- 341
K+ A N E + I+ + G G P + D +
Sbjct: 178 KYVCTAKNAAVDEEVVLVEYEIKGVTK-DNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY 236
Query: 342 ------ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLI----- 390
+ G + G ++ +++ GK L
Sbjct: 237 GSNPMGYPNYFK----NGKDVNGNPEDRITRHNRTS------------GKRLLFKTTLPE 280
Query: 391 -EGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN 449
EG Y N G P + +P + I V+ G +
Sbjct: 281 DEGV-YTCE--VDNGVG-----KPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCK 332
Query: 450 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509
V G P P W N +S R + + L + K GD G Y N G
Sbjct: 333 VTGLPAPNVVWSHNAK-PLSGGRATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKY 387
Query: 510 GTAKVTV 516
V V
Sbjct: 388 FETLVQV 394
Score = 46.4 bits (110), Expect = 2e-05
Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 41/188 (21%)
Query: 551 IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 604
W + + K + + + Q SD Y A G I
Sbjct: 39 YSWKK-DGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 97
Query: 605 TDKPSAPEGPIQ------WLLTLT----------DVTWEISNYLQELHSSLMPISLESQY 648
T ++P + L +TW+ +
Sbjct: 98 TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS---------GADPNADV 148
Query: 649 LMNDKRVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-----IEVVVTDK 701
D+R+T D YFT +T SD +Y TA N+ ++V I+ V D
Sbjct: 149 TDFDRRITAGPDGNLYFTIVT--KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDN 206
Query: 702 PSAPEGPI 709
P+
Sbjct: 207 SGYKGEPV 214
Score = 36.0 bits (83), Expect = 0.037
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 28/151 (18%)
Query: 169 PCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPG 227
+ +L + D G YT +N GK +++ V+ P
Sbjct: 254 NGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ 313
Query: 228 GPLKVSNVHA-EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT----- 281
P KV V + VT+ KV G P W+ + P++
Sbjct: 314 KPEKVIVVKQGQDVTIPCKV----TGLPAPNV----------VWSHNAK---PLSGGRAT 356
Query: 282 ----GLEVEGLIPNHKYKFRVRAVNKQGKSE 308
GL ++G+ K + RA N+ G
Sbjct: 357 VTDSGLVIKGVKNGDKGYYGCRATNEHGDKY 387
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 69.5 bits (170), Expect = 8e-15
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
V+ + A + W D + + V+ G +
Sbjct: 4 GSHLVATS-ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTA 58
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
T + + L+P KY V +++ G+ + +T+
Sbjct: 59 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Score = 61.4 bits (149), Expect = 6e-12
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG-----VWIPVGKTREPEMDVT 115
V+ I + W D + G+ VE E G + +P T +++
Sbjct: 12 ESVTEITASSFVVSWVSASD----TVSGFRVEYELSEEGDEPQYLDLPSTAT---SVNIP 64
Query: 116 GLTPGHEYKFRVKALNKEGESEPLET 141
L PG +Y V ++++GE + +
Sbjct: 65 DLLPGRKYIVNVYQISEDGEQSLILS 90
Score = 52.9 bits (127), Expect = 6e-09
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD 380
P + + + ++W + G+ +E + +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
+ DL+ G +Y V +++ G T+
Sbjct: 58 ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQ 93
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 73.0 bits (178), Expect = 1e-14
Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 15/206 (7%)
Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--- 275
P GG K +N+ L W P+ G + Y V +W E
Sbjct: 3 PCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRN 61
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
L E H+Y RVRA+ S+ + P + +
Sbjct: 62 INRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEK 121
Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGK-----VLDLI 390
+ + P+ I KY+ + + L
Sbjct: 122 SISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLE 181
Query: 391 EGNQYEFRVLAVNKG--GPGEPSDPT 414
Y V + G +PS+
Sbjct: 182 PNTLYCVHVESFVPGPPRRAQPSEKQ 207
Score = 49.5 bits (117), Expect = 8e-07
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVG---KTREPEMDVTGLT--PGHEYKFR 126
L+W P+ G + Y V+ + W+ D++ T H+Y R
Sbjct: 25 VLQWTPPEGLQGVKVT-YTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYAR 83
Query: 127 VKALNKEGESEPLETFSSIIARDP 150
V+A+ S+ E+ +
Sbjct: 84 VRAIWGTKCSKWAESGRFYPFLET 107
Score = 41.0 bits (95), Expect = 7e-04
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEGDTPK 383
KP + V L WTPPE V Y ++ W C
Sbjct: 11 KPANITFLSINMKNV-LQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCD 68
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 427
+QY RV A+ + ++ + ++ P
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPP 112
Score = 31.4 bits (70), Expect = 0.77
Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 21/167 (12%)
Query: 521 LKWNPPEDDGGAPIEY---YMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIR-- 575
L+W PPE G + Y Y + + K + I ++ + DY + R
Sbjct: 26 LQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVR 85
Query: 576 --------PLQRSDTAQYTVTATNSQGKDQV-----FIEVVVTDKPSAPEGPIQWLLTLT 622
S + + + I VV+T P +++
Sbjct: 86 AIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQ 145
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
+ + + L++ + + + + + ++ T +
Sbjct: 146 QIYSNLKYNVSVLNTK---SNRTWSQCVTNHTLVLTWLEPNTLYCVH 189
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 69.7 bits (171), Expect = 1e-14
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 406 GPGEPSDP---TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC 462
GP + S + P R ++V +G+ E V+GEP P W
Sbjct: 1 GPMKASSGDQGSPPCFLR-----------FPRPVRVVSGAEAELKCVVLGEPPPVVVWEK 49
Query: 463 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ + +R D L + + D+G+Y +N+ G A VTVL
Sbjct: 50 GGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Score = 42.4 bits (100), Expect = 4e-05
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ W + +R++ + + +D Y A N+ G+ V V
Sbjct: 45 VVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
Query: 606 DKP 608
+ P
Sbjct: 105 EPP 107
Score = 40.8 bits (96), Expect = 1e-04
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
L +R++ + + +D Y A N+ G+ V V + P
Sbjct: 54 LAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 39.7 bits (93), Expect = 4e-04
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
L + A DAG Y A N G+ V VL+ P
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 69.2 bits (170), Expect = 1e-14
Identities = 21/86 (24%), Positives = 32/86 (37%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
+ +V G N F +NV +P +W N + + + N L++ D
Sbjct: 15 MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
DSG Y N G A + V G
Sbjct: 75 DSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 43.1 bits (102), Expect = 2e-05
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+KW ++ N + I D+ Y TN +G+ + + VT
Sbjct: 40 VKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Query: 606 DK 607
Sbjct: 100 GG 101
Score = 42.3 bits (100), Expect = 4e-05
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
L ++ N + I D+ Y TN +G+ + + VT
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 34.6 bits (80), Expect = 0.017
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
L + D+G Y N G+ S + V
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 69.0 bits (169), Expect = 1e-14
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+LD P+ L+V+NV +T+ W P I Y +
Sbjct: 1 MLDAPTD----LQVTNVTDTSITVSWTPPSA----TITGYRITYTPSNGPGEPKELTVPP 52
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
T + + GL P +Y V A+ +S PL T +
Sbjct: 53 SSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89
Score = 62.1 bits (151), Expect = 4e-12
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTRE 109
LD L+V+N+ T+ W P + GY + +P T
Sbjct: 2 LDAPTDLQVTNVTDTSITVSWTPPSA----TITGYRITYTPSNGPGEPKELTVPPSST-- 55
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ +TGLTPG EY V AL ES PL
Sbjct: 56 -SVTITGLTPGVEYVVSVYALKDNQESPPLVG 86
Score = 59.4 bits (144), Expect = 3e-11
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P ++ + + ++WTPP + I GY I P K + +
Sbjct: 5 PTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTIT 60
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
L G +Y V A+ P T
Sbjct: 61 GLTPGVEYVVSVYALKDNQESPPLVGTQ 88
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 72.3 bits (177), Expect = 1e-14
Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 27/199 (13%)
Query: 432 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFD 488
+++ F + ++ N+ I ++K+ D + ++ +
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67
Query: 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK 548
+ D G YT +++ T+ T + E I +E + +
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127
Query: 549 VL-------------------IKWIRTNDKRVT----IDNVDYFTKITIRPLQRSDTAQY 585
V I W + +++ ++ D D + I + D Y
Sbjct: 128 VTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIY 186
Query: 586 TVTATNSQGKDQVFIEVVV 604
V + +GKD+ +++V
Sbjct: 187 EVILKDDRGKDKSRLKLVD 205
Score = 39.5 bits (92), Expect = 0.002
Identities = 8/55 (14%), Positives = 19/55 (34%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
++ ID ++ + LQ D YT + + + + +V +
Sbjct: 51 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105
Score = 38.4 bits (89), Expect = 0.004
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
K D L + + DAG Y V ++ GKD ++++
Sbjct: 162 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 31.8 bits (72), Expect = 0.56
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
++ + Q D G YT ++ + V ++
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 102
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 75.3 bits (185), Expect = 1e-14
Identities = 46/310 (14%), Positives = 83/310 (26%), Gaps = 53/310 (17%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
SP ++ L + V+ G+ N G P P W+ + + I++D+ +
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD- 172
Query: 483 KLKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
L + D Y+ + + L E
Sbjct: 173 -LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS 231
Query: 542 METDTGKVL-------------IKWIRTNDKRVTIDNV---DYFTKITIRPLQRSDTAQY 585
G L I W + + D ++ + I + D+ +Y
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYK-KGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 586 TVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE 645
A+N G + I V V P WL ++ L
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAP-------YWLDEPKNLILAPG----------EDGRLV 333
Query: 646 SQY----------LMNDKRVTIDNVDYFTKI-----TIRPLQRSDTAQYTVTATNSQGKD 690
+ ++N + + + ++ R Q S A Y +N G
Sbjct: 334 CRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393
Query: 691 QVFIEVVVTD 700
V V D
Sbjct: 394 LANAFVSVLD 403
Score = 72.6 bits (178), Expect = 9e-14
Identities = 49/346 (14%), Positives = 86/346 (24%), Gaps = 77/346 (22%)
Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI 467
P DP+ P I + D V N + G P P+ W N I
Sbjct: 4 PMDPSIQ---NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60
Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWN 524
R + + + R G Y +N +GT ++ V
Sbjct: 61 AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK------ 114
Query: 525 PPEDDGGAPIEYYMVEKMET---------DTGKVLIKWIRTNDKRVTIDNVDYFTKIT-- 573
++ +V++ +I W+ + +
Sbjct: 115 -SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS-SSMEPITQDKRVSQGHNGD 172
Query: 574 --IRPLQRSDT-AQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWL--------- 618
+ D Y+ A + V E ++
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 619 -------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
L L D+ W S ++++ +K + I NV
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAW--------YKKGGDLPSDKAKFENFNKALRITNV-- 282
Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
D+ +Y A+N G + I V V P + P
Sbjct: 283 ---------SEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP 319
Score = 52.6 bits (126), Expect = 2e-07
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
K +PY D+ ++ + G + G P PT +W+ N + S T
Sbjct: 310 KAAPYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ D++ +Y N G A V+VL
Sbjct: 369 -IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 41.8 bits (98), Expect = 5e-04
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 30/145 (20%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS----------PP 226
K + ++N L + D+G Y A N G + V V P P
Sbjct: 267 KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAP 326
Query: 227 GGPLKVSNVHAEGV---TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGL 283
G ++ A G T+ W V G+P++ AG+T +
Sbjct: 327 GEDGRL-VCRANGNPKPTVQWMVN----GEPLQ------SAPPNPNREVAGDT------I 369
Query: 284 EVEGLIPNHKYKFRVRAVNKQGKSE 308
+ + ++ N+ G
Sbjct: 370 IFRDTQISSRAVYQCNTSNEHGYLL 394
Score = 34.8 bits (80), Expect = 0.080
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
+ R Q + Y N +G V VLD
Sbjct: 366 GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 29.8 bits (67), Expect = 3.1
Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 192 AQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVPDD 249
G Y A N G S + + V P P L V +TL P
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP- 142
Query: 250 DGGQPIEKYV 259
G P
Sbjct: 143 --GLPSPVIF 150
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 72.2 bits (176), Expect = 2e-14
Identities = 27/208 (12%), Positives = 59/208 (28%), Gaps = 13/208 (6%)
Query: 225 PPGGPLKVS---NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
PP P +S ++ + W+ + P + A ++ +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPE-THLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 282 G------LEVEGLIPNHKYKFRVRAVNKQG--KSEPLTTTASIEAK-NPFNQPGKPGTPE 332
+ + L+ V+A N G +S L K P P+
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPD 122
Query: 333 IKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEG 392
+ + L+W P + + + + + W + ++ L +
Sbjct: 123 VVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQA 182
Query: 393 NQYEFRVLAVNKGGPGEPSDPTAPHIAR 420
Y ++ + PG S + R
Sbjct: 183 PVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 39.8 bits (92), Expect = 0.001
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 8/88 (9%)
Query: 62 EVSNIHKDGCTLKWNKPKDDGGEPLEGYL--VEKYDPETGVWIPVGKTREPEMDVTGLTP 119
+V + L W K E L + + + + + ++ GL
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQ 181
Query: 120 GHEYKFRVKALNKEGE------SEPLET 141
Y +++ + S L+
Sbjct: 182 APVYTLQMRCIRSSLPGFWSPWSPGLQL 209
Score = 29.0 bits (64), Expect = 4.7
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 10/111 (9%)
Query: 328 PGTPE----IKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTP 382
P +P + T+ + W P E + + + + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 383 KG----KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN 429
+ +L+ V A N G E S K+ P +
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSE-SPKLCLDPMDVVKLEPPML 114
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 73.8 bits (180), Expect = 2e-14
Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 14/225 (6%)
Query: 202 VTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE----- 256
+ AE N EV+ + + G P + + + D
Sbjct: 78 IRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSF 137
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
Y + ++G E + ++ L P Y +V+A + +
Sbjct: 138 TYSLVIWKNSSGVEE---RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 194
Query: 317 EAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI---VGYIIEKKEKYSPIWEK 373
N+ P E+ + ++V L W N + ++ + W++
Sbjct: 195 IKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253
Query: 374 CAQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDPTAP 416
E V ++ + Y RV A + S+
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF 298
Score = 64.6 bits (156), Expect = 2e-11
Identities = 30/220 (13%), Positives = 54/220 (24%), Gaps = 30/220 (13%)
Query: 221 DKPSPPGGPLKVSNVHAEGV----TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE- 275
D P V + + L W D+ G + D W
Sbjct: 2 DPLKSP------QKVEVDIIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGC 53
Query: 276 --TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEI 333
L + K R+RA + S + + K P
Sbjct: 54 QNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEA-- 111
Query: 334 KDFDTDFVELAWTPPEQNGGS-----PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
+ + + +P ++ Y + + S + E + E + K+
Sbjct: 112 ---EDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE---RIENIYSRHKIYK 165
Query: 389 LIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARAKKVSP 426
L Y +V A G S ++ P
Sbjct: 166 LSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205
Score = 63.4 bits (153), Expect = 6e-11
Identities = 34/276 (12%), Positives = 69/276 (25%), Gaps = 41/276 (14%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
L+WN+ + G + + WI + + + + L E K R
Sbjct: 20 ILRWNRSDESVGNV--TFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 77
Query: 127 VKALNKEGESEPLETFSSIIARDPYSKYTSV------SSLDSHKRSNQPCGSGMVRKVQH 180
++A E S E S R V ++ H
Sbjct: 78 IRAEK-ENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 136
Query: 181 LDYN---------TKLGVRMAQRADAGF-------YTVTAE------NINGKDSVEVEVI 218
Y+ + + + Y + + G S +
Sbjct: 137 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 196
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGE 275
+ P +V + L W + ++ ++ +W +
Sbjct: 197 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD 256
Query: 276 TEGPVT--GLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
E T + + + Y RV+A + S
Sbjct: 257 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
Score = 48.8 bits (115), Expect = 3e-06
Identities = 43/298 (14%), Positives = 87/298 (29%), Gaps = 45/298 (15%)
Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEGDTPK 383
P E+ D +F+ L W +++ G+ V + + ++ W K C
Sbjct: 6 SPQKVEVDIIDDNFI-LRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCN 62
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN-RDQLSDIKVRA-- 440
L L + + R+ A + + +A+ P ++ + I +
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISP 122
Query: 441 -----------GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLK 485
G +F + + + +E + N R KI T K+K
Sbjct: 123 GTKDSVMWALDGLSFTYSLVIWKNSSGVEERIEN-----IYSRHKIYKLSPETTYCLKVK 177
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKG-------TAKVTVLGCSLKWNPPEDDGGAPIEYYM 538
G+Y+ + V LKW+ + + ++
Sbjct: 178 AALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV-QWL 236
Query: 539 VEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT--VTATNSQG 594
++ + G L KW + D F + Y V A++
Sbjct: 237 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNV------FQKGIYLLRVQASDGNN 288
Score = 47.2 bits (111), Expect = 1e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 65 NIHKDGCTLKWNKPKDDGGEPLE---GYLVEKYDPETGVWIPV---GKTREPEMDVT-GL 117
++ LKW+ + ++ +L W + + + +
Sbjct: 212 SVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNV 271
Query: 118 TPGHEYKFRVKALNKEGESEPLETF 142
Y RV+A + S E
Sbjct: 272 FQKGIYLLRVQASDGNNTSFWSEEI 296
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 71.7 bits (175), Expect = 2e-14
Identities = 32/210 (15%), Positives = 49/210 (23%), Gaps = 23/210 (10%)
Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE--- 275
LK V + L W+ P Y V +W +
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNILQWQ-PGRALTGNSSVYFVQYKIYGQRQWKNKEDCWG 60
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKD 335
T+ L E Y RVRA + SE T P P +
Sbjct: 61 TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQV 118
Query: 336 FDTDFVELAW--TPPEQNGGSPI-------VGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
+ V L P + + Y + +K EG ++
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQK--VYEGAHRAVEI 176
Query: 387 LDLIEGNQYEFRVLAVNK--GGPGEPSDPT 414
L + Y + S+
Sbjct: 177 EALTPHSSYCVVAEIYQPMLDRRSQRSEER 206
Score = 44.8 bits (105), Expect = 3e-05
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
L+W + G Y V+ W T+E D+T Y R
Sbjct: 24 ILQWQPGRALTGNSS-VYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGR 82
Query: 127 VKALNKEGESEPLETFSSIIARD 149
V+A + SE T +
Sbjct: 83 VRAASAGSYSEWSMTPRFTPWWE 105
Score = 40.5 bits (94), Expect = 9e-04
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 323 NQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK---CAQTEG 379
++ KP + + + + L W P Y ++ K W+ C T+
Sbjct: 6 HESLKPQRVQFQSRNFHNI-LQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63
Query: 380 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
+ Y RV A + G E S K+ P
Sbjct: 64 LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110
Score = 35.1 bits (80), Expect = 0.050
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 72 TLKWNKPKDDGGEPLE-----GYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
+ + + +E Y V + V + +++ LTP Y
Sbjct: 129 PNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVV 188
Query: 127 VKA----LNKEGE-SEP 138
+ L++ + SE
Sbjct: 189 AEIYQPMLDRRSQRSEE 205
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 73.1 bits (179), Expect = 3e-14
Identities = 37/307 (12%), Positives = 81/307 (26%), Gaps = 54/307 (17%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
P I ++ V+ G+ G EW + + +D S+
Sbjct: 3 SIPVIEPSV-PELVVKPGATVTLRCVGNGSV----EWDGPPSPHWT-----LYSDGSSSI 52
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
L ++ ++G Y + V P E + E +
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD------PARPWNVLAQEVVVFEDQD 106
Query: 544 TD-----TG---KVLIKWIRTNDKRVTIDN---VDYFTKITIRPLQRSDTAQYTVTATNS 592
T + + +R + + + TI + + Y +A
Sbjct: 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMG 166
Query: 593 -QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLM--------PIS 643
+ + I + V P P +T + ++ + ++
Sbjct: 167 GRKVMSISIRLKVQKVIPGP--PA--------LTLVPAELVRIRGEAAQIVCSASSVDVN 216
Query: 644 LESQYLMNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
+ N+ ++ I F + + Y+ A+N QGK +
Sbjct: 217 FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF 276
Query: 696 VVVTDKP 702
V +
Sbjct: 277 FRVVESA 283
Score = 57.7 bits (139), Expect = 3e-09
Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 10/160 (6%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP-- 608
++W T+ + + ++ +T Y T I + V D
Sbjct: 32 VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
Query: 609 SAPEGPIQWLLTLTDVTWE--ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
+ D +++ + E SL + + + LM + F
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSL--VRVRGRPLMRHTNYSFSPWHGF--- 146
Query: 667 TIRPLQRSDTAQYTVTATNS-QGKDQVFIEVVVTDKPSAP 705
TI + + Y +A + + I + V P
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP 186
Score = 53.8 bits (129), Expect = 6e-08
Identities = 21/203 (10%), Positives = 50/203 (24%), Gaps = 22/203 (10%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
K ++ V + + + + + +
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 482 TKLKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
+ +K S Y A+ + ++ V + PP P E +
Sbjct: 146 --FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ--KVIPGPPALTLV-PAELVRIR 200
Query: 541 KME-------TDTGKVLIKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQY 585
+ +++ N+ ++ I F + + Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Query: 586 TVTATNSQGKDQVFIEVVVTDKP 608
+ A+N QGK + V +
Sbjct: 261 SCVASNVQGKHSTSMFFRVVESA 283
Score = 38.8 bits (90), Expect = 0.004
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
L + AG Y+ A N+ GK S + V++
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283
Score = 38.4 bits (89), Expect = 0.006
Identities = 9/50 (18%), Positives = 15/50 (30%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP 225
+ ++ L A + G Y T S + + V D P
Sbjct: 42 WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP 91
Score = 29.5 bits (66), Expect = 3.1
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIVLDKPSPP 226
+ A+ + Y +A S+ + + V P
Sbjct: 138 YSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGP 186
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 74.7 bits (182), Expect = 3e-14
Identities = 53/397 (13%), Positives = 103/397 (25%), Gaps = 56/397 (14%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TREPEMDVT--GLTPGHEYKFR 126
L+WN+ + G + + WI + + + + L E K R
Sbjct: 24 ILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 81
Query: 127 VKALNKEGESEPLETFSSIIARDPY---------SKYTSVSSLDSHKRSNQPCGSGMVRK 177
++A KE S E S R ++ ++ S + +
Sbjct: 82 IRA-EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLS 140
Query: 178 VQHLDYNTKLGVRMAQRADAGFYTVTAE-------------------NINGKDSVEVEVI 218
+ K + +R + + G S +
Sbjct: 141 FTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIK 200
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGE 275
+ P +V + L W + ++ ++ +W +
Sbjct: 201 TTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPD 260
Query: 276 TEGPVTGLEV--EGLIPNHKYKFRVRAVNKQGKSEPLTT-TASIEAKNPFNQPGKPGTPE 332
E T V + + Y RV+A + S E + P
Sbjct: 261 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSL 320
Query: 333 IKDFDTDFVELAWTPPEQNGGSPI-----VGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
+D + P+Q+G +P+ + Y I E S K V
Sbjct: 321 -----SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK---IIEKKTDVTVP 372
Query: 388 DLIEGNQYEFRVLA-VNKGGPGEPSDPTAPHIARAKK 423
+L Y + A + S + + K
Sbjct: 373 NLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKP 409
Score = 61.9 bits (149), Expect = 3e-10
Identities = 57/414 (13%), Positives = 98/414 (23%), Gaps = 63/414 (15%)
Query: 234 NVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---TEGPVTGLEVE 286
V + L W D+ G + D W
Sbjct: 13 KVEVDIIDDNFILRWNRSDESVGNVT--FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSL 70
Query: 287 GLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWT 346
L + K R+RA + S + + K P E K
Sbjct: 71 KLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKD 130
Query: 347 PPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 406
Y + + S + E + E + K+ L Y +V A
Sbjct: 131 SVMWALDGLSFTYSLVIWKNSSGVEE---RIENIYSRHKIYKLSPETTYCLKVKAALLTS 187
Query: 407 PGE-PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 465
P + P ++S +++ + +
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247
Query: 466 TIISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWG-------------TDKG 510
++K + D ++ K + GIY L V+ S G T+
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307
Query: 511 TA------KVTVLGCSL--KWNPPEDDGGAPIE-----YYMVEKMETDTGKVLIKWIRTN 557
+ L S P+ G P+ Y + E + + I
Sbjct: 308 AFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAE--RKIIEK 365
Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
VT+ N+ T Y V A + +K S
Sbjct: 366 KTDVTVPNLKPLT-------------VYCVKA-------RAHTMDEKLNKSSVF 399
Score = 39.2 bits (90), Expect = 0.004
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 7/75 (9%)
Query: 71 CTLKWNKPKDDGGEPLE---GYLVEKYDPETGVWIPV---GKTREPEMDVT-GLTPGHEY 123
LKW+ + ++ +L W + + + + Y
Sbjct: 222 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 281
Query: 124 KFRVKALNKEGESEP 138
RV+A + S
Sbjct: 282 LLRVQASDGNNTSFW 296
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 67.7 bits (166), Expect = 3e-14
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
Q+ G + ++ + T+ W + + ++++I +D L V D
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66
Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+ D G Y V N +G D A++ V G
Sbjct: 67 KLDDGTYRCKVVNDYGEDSSYAELFVKG 94
Score = 38.8 bits (91), Expect = 6e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W N ++ I D + ++ + + D Y N G+D + E+ V
Sbjct: 34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 38.1 bits (89), Expect = 0.001
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
L N ++ I D + ++ + + D Y N G+D + E+ V
Sbjct: 43 LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 33.1 bits (76), Expect = 0.055
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
L V+ + D G Y N G+DS E+ V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 73.2 bits (179), Expect = 4e-14
Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 21/193 (10%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
+ Q+ + V G + V G + W+ ++ + K +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVT 220
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
+ T +N G + + +V V P +E + + G+
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSF------PASVQLHTAVEMHHWCIPFSVDGQP 274
Query: 550 L--IKWIR-----TNDKRVTIDNVDYFTK-------ITIRPLQRSDTAQYTVTATNSQGK 595
++W+ + + ++ + + + YT+ A N G+
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ 334
Query: 596 DQVFIEVVVTDKP 608
I D P
Sbjct: 335 ASASIMAAFMDNP 347
Score = 59.0 bits (142), Expect = 2e-09
Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 24/167 (14%)
Query: 551 IKWIRTNDK-RVTIDNVDYFTKIT---IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
WI T + T+ + + T A N G+ +V ++V V+
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF 249
Query: 607 KPSAPEGPIQWLLTLT-----------DVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
S + + W + ++ S
Sbjct: 250 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG---------SVLNETSFIFTEFLEP 300
Query: 656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ + + + YT+ A N G+ I D P
Sbjct: 301 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 45.1 bits (106), Expect = 5e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
L + + G YT+ A N G+ S + +D P
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 39.7 bits (92), Expect = 0.003
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLK 231
S V K L + + T AEN G+ V V+V V S P
Sbjct: 200 SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV----SFPASVQL 255
Query: 232 VSNVHAEGVTLDWKV 246
+ V + + V
Sbjct: 256 HTAVEMHHWCIPFSV 270
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 67.7 bits (165), Expect = 6e-14
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE--- 277
P L V++V + L+W+ P + ++ V P + E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMV 65
Query: 278 -GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
G + L Y + + K++ + TA +
Sbjct: 66 PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPS 110
Score = 57.7 bits (139), Expect = 2e-10
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 14/93 (15%)
Query: 59 GPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPE------- 111
L V+++ L W P + +L+ P P +
Sbjct: 13 SQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 112 ---MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ L G Y + L +++ ++
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG 101
Score = 44.6 bits (105), Expect = 7e-06
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
+ + D T + L W P S ++ + + P Q E P
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 385 K----VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ + DL G Y + + + TA
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 70.7 bits (172), Expect = 7e-14
Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 32/213 (15%)
Query: 123 YKFRVKALNKEGESEPLETFSSIIARDPYS-KYTSVSSLDSHKRSNQPCGSGMVR----- 176
V E + + + D + +Y S D + + G VR
Sbjct: 28 ENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSS 87
Query: 177 -----------------KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+ + + L V + D ++
Sbjct: 88 LTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSP 147
Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
+P K S ++ + VT+ W P+ G +E Y++ K E
Sbjct: 148 EIVVNPVR-DFKASEINKKNVTVTWTEPETTEG--LEGYILYK------DGKKVAEIGKD 198
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTT 312
T + L + Y F++ A G+ +
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
Score = 69.6 bits (169), Expect = 2e-13
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVT 115
+P + S I+K T+ W +P+ G LEGY++ K G + E
Sbjct: 152 NPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYK----DGKKVAEIGKDETSYTFK 205
Query: 116 GLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
L Y F++ A GE E+ + AR
Sbjct: 206 KLNRHTIYNFKIAAKYSNGEVSSKESLTLRTAR 238
Score = 63.8 bits (154), Expect = 2e-11
Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 21/213 (9%)
Query: 206 NINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE 265
I+ + E V + +GV ++ K +D + + + +
Sbjct: 35 GIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLP 94
Query: 266 ATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSE-----PLTTTASIEAKN 320
A L E +V T IE +
Sbjct: 95 AKEVLA--------KVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTS 146
Query: 321 PFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD 380
P + + + V + WT PE G + GYI+ K +K A+ D
Sbjct: 147 PEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILYKD------GKKVAEIGKD 198
Query: 381 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
L Y F++ A G +
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231
Score = 41.8 bits (97), Expect = 4e-04
Identities = 38/244 (15%), Positives = 74/244 (30%), Gaps = 45/244 (18%)
Query: 371 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN-KGGPGEPSDPTAPHIARAKKVSPYIN 429
++ A+ G + ++ G E V D T + A + I+
Sbjct: 6 LKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAIS 65
Query: 430 RDQ--LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 487
D ++ K+ G ++ GEP+P KE L +K + + + L V
Sbjct: 66 DDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVL-------AKVVLRAEAKTEGSNLSVT 118
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAK-----------------VTVLGCSLKWNPPEDDG 530
+S GD + + T + ++ W PE
Sbjct: 119 NSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTE 178
Query: 531 GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
G +E Y++ K ++ ++ T ++ T + + A
Sbjct: 179 G--LEGYILYKDGKKVAEI-----GKDETSYTFKKLNRHTIYN-----------FKIAAK 220
Query: 591 NSQG 594
S G
Sbjct: 221 YSNG 224
Score = 28.4 bits (62), Expect = 7.0
Identities = 18/182 (9%), Positives = 44/182 (24%), Gaps = 13/182 (7%)
Query: 513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK------RVTIDNV 566
+ + ++ D G + +E + + K + +
Sbjct: 50 TLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAK 109
Query: 567 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTW 626
+ +++ D ++ + + + +VT
Sbjct: 110 TEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTV 169
Query: 627 EISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNS 686
+ LE L D + + T T + L R + + A S
Sbjct: 170 TWT-------EPETTEGLEGYILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYS 222
Query: 687 QG 688
G
Sbjct: 223 NG 224
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 67.1 bits (164), Expect = 9e-14
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P + + LAW P G ++ Y ++ EK + + +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
++ L G Y +V A ++ G G
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 60.6 bits (147), Expect = 2e-11
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
P ++V+ ++L W VP G + Y V ++ + +
Sbjct: 6 SGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTASIEA 318
E+ GL Y +VRA ++ G + + +++
Sbjct: 64 NRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDS 104
Score = 54.0 bits (130), Expect = 3e-09
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 60 PLEVSNIHKDGCT-----LKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPVGKTREPEM 112
P VS+I + L W P+ G + Y V+ + E + KT E
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
++ GL G Y +V+A ++ G
Sbjct: 67 ELRGLKRGASYLVQVRARSEAGYGPF 92
Score = 30.9 bits (70), Expect = 0.36
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVL-IKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
SL W P G + Y V+ E +++++T++ R + + ++
Sbjct: 25 SLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQ--- 80
Query: 579 RSDTAQYTVTATNSQG 594
V A + G
Sbjct: 81 --------VRARSEAG 88
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 66.5 bits (163), Expect = 1e-13
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKR 491
L D VR G + I V GEP P WL N + + RF + +L++ ++R
Sbjct: 12 LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
GD+G YT N +G + A++ V G
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 43.8 bits (104), Expect = 1e-05
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W +R + +R + ++ I +R D YT A N G Q + V
Sbjct: 37 VSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Query: 605 TDK 607
+
Sbjct: 97 RGE 99
Score = 39.6 bits (93), Expect = 3e-04
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
+ +R + ++ I +R D YT A N G Q + V +
Sbjct: 49 DQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
L + A+R DAGFYT A N G E + V +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 66.3 bits (162), Expect = 1e-13
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
+L P L VS V + + L W PD + +++ + G
Sbjct: 1 MLPAPKN----LVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPG 52
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
++ GL P +Y + V +S PL+ +
Sbjct: 53 SERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFT 89
Score = 59.0 bits (143), Expect = 5e-11
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYD---PETGVWIPVGKTREPE 111
L L VS + +D L W P + ++++ + + + V + E
Sbjct: 2 LPAPKNLVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPGS-ERS 56
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLET 141
D+TGL PG EY + + S PL
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGHRSNPLSA 86
Score = 49.4 bits (118), Expect = 1e-07
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P + + D + L+WT P+ + ++I+ +E G +
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLT 60
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
L G +Y + V G P
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNPLSAEF 88
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 65.8 bits (161), Expect = 3e-13
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 212 SVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRW 270
S +++VI P P K + L W P D I Y + D G
Sbjct: 6 SGDIQVITQTGVPGQPLN-FKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEE 61
Query: 271 TPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
T P T ++GL PN Y FR+ A + QG
Sbjct: 62 QRI--TIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGAS 98
Score = 65.1 bits (159), Expect = 5e-13
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
I+ PG+P + + + L+WTPP ++ I Y + K+ ++
Sbjct: 7 GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPP-RSD--TIANYELVYKDGEHGEEQR 63
Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
T ++ L + Y FR+ A + G G +
Sbjct: 64 --ITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Score = 56.6 bits (137), Expect = 4e-10
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
P P + + L W P+ D + Y + D E G + +
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPGTSYRL 74
Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
GL P Y FR+ A + +G
Sbjct: 75 QGLKPNSLYYFRLAARSPQGLGAS 98
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 71.0 bits (173), Expect = 3e-13
Identities = 39/318 (12%), Positives = 84/318 (26%), Gaps = 71/318 (22%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 478
+ + G E + W ++ I ++ + D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG-------- 530
+ L + + K DS Y V++ K ++ V G + + G
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLTLTLE 119
Query: 531 --GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 588
++ K + +++ L+ D+ +T T
Sbjct: 120 SPPGS--------------SPSVQCRSPRGKNIQGGKT-----LSVSQLELQDSGTWTCT 160
Query: 589 ATNSQGKDQVFIEVVVTDKPSAPEGPIQ---------WLLTLTDVTWEISNYL------Q 633
+Q K + I++VV A + + L T S L
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220
Query: 634 ELHSSLMPISLESQYL------MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 687
S + L+++ + + K + + Q + + T+
Sbjct: 221 SSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT 280
Query: 688 GKDQVFIEVVVTDKPSAP 705
GK + +VV
Sbjct: 281 GKLHQEVNLVVMRATQLQ 298
Score = 63.3 bits (153), Expect = 9e-11
Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 48/238 (20%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
SD + G + + P+ + R K + K+ L V + D
Sbjct: 104 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 153
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDGGAPI 534
SG +T V + + + V L + + G +
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 535 EYYM--------VEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
+ + +V +K + + K + + Q + + T
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPE-------GP----IQWLLTLTDVTWEISNYLQ 633
+ GK + +VV + GP + L L + ++S +
Sbjct: 274 LALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Score = 47.1 bits (111), Expect = 1e-05
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 2/126 (1%)
Query: 148 RDPYSKYTSVSSLDSHKRSNQPCGSGM-VRKVQHLDYNTKLGVRMAQRADAGFYTVTAEN 206
R SK L + + S + ++ + L + L + Q A +G T+ E
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 207 INGKDSVEVEVIVLDKPSPPGG-PLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDE 265
GK EV ++V+ +V + + L K+ + + + V ++
Sbjct: 279 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP 338
Query: 266 ATGRWT 271
G W
Sbjct: 339 EAGMWQ 344
Score = 43.6 bits (102), Expect = 1e-04
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 41/145 (28%)
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP--EGPIQWLLTLT-------- 622
I+ L+ D+ Y + + + Q+ + +T +G LTLT
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQS---LTLTLESPPGSS 125
Query: 623 -DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 681
V + + K +++ + + D+ +T
Sbjct: 126 PSVQCRSPR---------------GKNIQGGKTLSVSQL-----------ELQDSGTWTC 159
Query: 682 TATNSQGKDQVFIEVVVTDKPSAPE 706
T +Q K + I++VV A
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASS 184
Score = 35.5 bits (81), Expect = 0.046
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV-S 233
R+ N L ++ + D+ Y E+ EV+++V + L
Sbjct: 57 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANSDTHLLQGQ 112
Query: 234 NV----HAEGV---TLDWKVPD 248
++ + ++ + P
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPR 134
Score = 35.5 bits (81), Expect = 0.051
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLD 243
L V + D+G +T T K +++++VL EG ++
Sbjct: 141 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVE 195
Query: 244 WKVP 247
+ P
Sbjct: 196 FSFP 199
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 65.5 bits (160), Expect = 3e-13
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 337 DTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE 396
+ W PP G I YI+E S +W + ++ +L+ Y
Sbjct: 22 AEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS---QRAASNFTEIKNLLVNTLYT 77
Query: 397 FRVLAVNKGGPGEPSDPT 414
RV AV G G SD
Sbjct: 78 VRVAAVTSRGIGNWSDSK 95
Score = 60.5 bits (147), Expect = 1e-11
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 221 DKPSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
P P L + + W P G I +Y+V+ + W
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSGSKMWA---SQRAA 61
Query: 280 VTGLEVEGLIPNHKYKFRVRAVNKQGK---SEPLTTT 313
E++ L+ N Y RV AV +G S+ + T
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSIT 98
Score = 54.4 bits (131), Expect = 2e-09
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
W P G + Y+VE + +W + ++ L Y RV A+
Sbjct: 27 VGHWAPPIHTHGL-IREYIVEYSRSGSKMWASQ-RAASNFTEIKNLLVNTLYTVRVAAVT 84
Query: 132 KEGESEP 138
G
Sbjct: 85 SRGIGNW 91
Score = 32.4 bits (74), Expect = 0.13
Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
W PP G I Y+VE + + R I N+ T T+R
Sbjct: 27 VGHWAPPIHTHG-LIREYIVEYSRSGSKMWAS--QRAASNFTEIKNLLVNTLYTVR---- 79
Query: 580 SDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAP 611
V A S+G D + T K S P
Sbjct: 80 -------VAAVTSRGIGNWSDSK---SITTIKGSGP 105
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 69.6 bits (170), Expect = 4e-13
Identities = 43/309 (13%), Positives = 76/309 (24%), Gaps = 60/309 (19%)
Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 484
+P I ++ V G G EW + D + + L
Sbjct: 4 APVIEPSG-PELVVEPGETVTLRCVSNGSV----EWDGPISPYWTLD-----PESPGSTL 53
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMET 544
++ ++G Y T + V P E +VE E
Sbjct: 54 TTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD------PAHSWNLLAQEVTVVEGQEA 107
Query: 545 D-----TG---KVLIKWIRTNDKRVTIDNVDYF----TKITIRPLQRSDTAQYTVTATNS 592
T K + +R R + YF IR + D+ Y +
Sbjct: 108 VLPCLITDPALKDSVSLMR-EGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN 166
Query: 593 -QGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTW----------EISNYLQELHSSLMP 641
+ I + V P Q L + + +N
Sbjct: 167 GRESTSTGIWLKVNRVHPE---PPQIKLEPSKLVRIRGEAAQIVCSATNA---------E 214
Query: 642 ISLESQYLMNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYTVTATNSQGKDQVF 693
+ D ++ I F ++ + D Y+ A+N G
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTAT 274
Query: 694 IEVVVTDKP 702
+ V +
Sbjct: 275 MNFQVVESH 283
Score = 56.9 bits (137), Expect = 6e-09
Identities = 21/202 (10%), Positives = 54/202 (26%), Gaps = 20/202 (9%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 481
K + ++ V G + + + + + + +
Sbjct: 86 KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
+ +K DS Y + G + + + + + PP+ P + +
Sbjct: 146 --FIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIKLE-PSKLVRIRG 201
Query: 542 ME-------TDTGKVLIKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSDTAQYT 586
T+ ++ D ++ I F ++ + D Y+
Sbjct: 202 EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261
Query: 587 VTATNSQGKDQVFIEVVVTDKP 608
A+N G + V +
Sbjct: 262 CVASNDVGTRTATMNFQVVESH 283
Score = 53.4 bits (128), Expect = 8e-08
Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 10/160 (6%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS- 609
++W T+D + +T R +T Y T I + V D
Sbjct: 32 VEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91
Query: 610 -APEGPIQWLLTLTDVTWE--ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
++ + I++ L S+ + + ++ F
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDP--ALKDSVSLMREGGRQVLRKTVYFFSPWRGF--- 146
Query: 667 TIRPLQRSDTAQYTVTATNS-QGKDQVFIEVVVTDKPSAP 705
IR + D+ Y + + I + V P
Sbjct: 147 IIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
Score = 52.3 bits (125), Expect = 2e-07
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 5/120 (4%)
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
+ G S + R P I + S + G + + +
Sbjct: 163 TMVNGR-ESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGFNVI 220
Query: 461 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
L + I F+ K L + D+GIY+ N GT T V+
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
Score = 38.4 bits (89), Expect = 0.005
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+ + L + DAG Y+ A N G + + V++
Sbjct: 237 QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 37.6 bits (87), Expect = 0.010
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP 225
+ + L R A + G Y T S + + V D
Sbjct: 41 YWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS 91
Score = 30.7 bits (69), Expect = 1.6
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIVLDKPSPP 226
V +R A+ D+ Y S + + V P
Sbjct: 136 TVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 64.4 bits (157), Expect = 5e-13
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 412 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD 471
+ AP+ +K+ V A + +F G P+PT WL N +
Sbjct: 1 NKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53
Query: 472 RFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
R ++ L + D G YT V+N +G+ T + V+
Sbjct: 54 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 35.9 bits (83), Expect = 0.007
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
+ + + + L + +D G YT EN G + + V+
Sbjct: 52 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 35.5 bits (82), Expect = 0.008
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
++W + + + + + + SD YT N G + V
Sbjct: 40 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 32.4 bits (74), Expect = 0.094
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ + + + + SD YT N G + V
Sbjct: 51 QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 64.7 bits (158), Expect = 5e-13
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKR 491
++ + G D V G P P W N T+ S D K++ ++ L +
Sbjct: 12 PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
D+G Y KN G T ++ VL
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 38.5 bits (90), Expect = 7e-04
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W ++++D I + + ++ SD Y A N G+ +++ V
Sbjct: 37 VSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Query: 605 TDK 607
K
Sbjct: 97 LAK 99
Score = 36.1 bits (84), Expect = 0.005
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
L + + +DAG Y A+N G+ + V++ VL K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
Score = 35.8 bits (83), Expect = 0.007
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
++ SD Y A N G+ +++ V K
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 64.8 bits (158), Expect = 6e-13
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 221 DKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
S P L +++ + + + W P + Y + + + G
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTPPLG----RVLHYWLTYAPASGLGPEKSVSVPG 58
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
+ + + L KY+ V A+ G+SE ++ T
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 52.4 bits (126), Expect = 1e-08
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD- 113
P L +++ D + W P + Y + Y P +G+ +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPLG----RVLHYWLT-YAPASGLGPEKSVSVPGARSH 62
Query: 114 --VTGLTPGHEYKFRVKALNKEGESEPLET 141
+ L +Y+ V A+ G SE +
Sbjct: 63 VTLPDLQAATKYRVLVSAIYAAGRSEAVSA 92
Score = 52.1 bits (125), Expect = 1e-08
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P + D ++++WTPP ++ Y + EK G
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ DL +Y V A+ G E T
Sbjct: 64 TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94
Score = 33.2 bits (76), Expect = 0.064
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W PP + +Y + +K V++ + +T+ LQ
Sbjct: 25 QVSWTPPLG----RVLHYWLTYAPASGL--------GPEKSVSVPGAR--SHVTLPDLQA 70
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
+ + V+A + G+ + T PS P
Sbjct: 71 ATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 68.4 bits (167), Expect = 9e-13
Identities = 57/316 (18%), Positives = 100/316 (31%), Gaps = 78/316 (24%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWL-CNDITIISKD-RFKIV-NDDKSTKLKVF 487
S ++ G + F V G+ W N + R +V NDD S+ L ++
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 488 DSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT 546
++ D+GIY V GT T V + AP E
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKI-------FQKLMFKNAP------TPQEFKE 114
Query: 547 GKVL-------------IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
G+ I W D R + + +Y IR ++++D Y
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL---QIRGIKKTDEGTYR 171
Query: 587 VTATNSQGKDQVF--IEVVVTDKPSAPEGPIQWLLTLTD-----------------VTWE 627
+ F I+V+V P+ T ++W
Sbjct: 172 CEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW- 230
Query: 628 ISNYLQELHSSLMPISLESQYLMNDKRVTIDN--VDYFTKITIRPLQRSDTAQYTVTATN 685
+ + + + N++ + D +++TIR + ++D A+Y A N
Sbjct: 231 ---------------TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275
Query: 686 SQGKDQVFIEVVVTDK 701
G+ I + V K
Sbjct: 276 KAGEQDASIHLKVFAK 291
Score = 65.7 bits (160), Expect = 7e-12
Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 33/206 (16%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
++ + + + G + +V+ PT W +I K + + +
Sbjct: 98 FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L++ K+ D G Y + + + V+ PP +
Sbjct: 157 -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV----PPT-----VQARQSIVNA 206
Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKI--------TIRPLQRSD 581
+ G+ + + W + + + + + D I TIR + ++D
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDDEKHIFSDDSSELTIRNVDKND 265
Query: 582 TAQYTVTATNSQGKDQVFIEVVVTDK 607
A+Y A N G+ I + V K
Sbjct: 266 EAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 46.0 bits (109), Expect = 2e-05
Identities = 29/179 (16%), Positives = 52/179 (29%), Gaps = 43/179 (24%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQ-VFIE 601
I W N +R+++ D + TI D Y T G +
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Query: 602 VVVTDKPSAPEGP-IQWLL-----TLT---------DVTWEISNYLQELHSSLMPISLES 646
V + K P Q + + W+ + L+
Sbjct: 95 VKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG---------RDVILK- 144
Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVTDKPS 703
D R + + +Y IR ++++D Y + F I+V+V P+
Sbjct: 145 ----KDVRFIVLSNNYL---QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT 196
Score = 36.0 bits (83), Expect = 0.037
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
D +++L +R + D Y AEN G+ + + V K
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 35.6 bits (82), Expect = 0.043
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 651 NDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
N +R+++ D + TI D Y T G + V + K P
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Score = 33.7 bits (77), Expect = 0.18
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPS 224
+ V + D ++ L + A DAG Y +G V V + K
Sbjct: 52 ISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Score = 32.2 bits (73), Expect = 0.46
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGK--DSVEVEVIVLDKPSPPGGPLKVSNVHAEG-- 239
N L +R ++ D G Y + + +++VIV P+ V+ G
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213
Query: 240 VTLD 243
VTL
Sbjct: 214 VTLV 217
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 64.0 bits (156), Expect = 1e-12
Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 5/94 (5%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
+ P ++V +V + W P P++ + + + +
Sbjct: 2 RLDAPSQ-IEVKDVTDTTALITWMPPSQ----PVDGFELTYGIKDVPGDRTTIDLTEDEN 56
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ L P+ +Y+ + + S P T +
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 90
Score = 57.4 bits (139), Expect = 2e-10
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 55 LDPEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPVGKTRE 109
+ + P +EV ++ + W P P++G+ + K P I + + E
Sbjct: 1 MRLDAPSQIEVKDVTDTTALITWMPPSQ----PVDGFELTYGIKDVPGDRTTIDLTED-E 55
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ + L P EY+ + + + S P +
Sbjct: 56 NQYSIGNLKPDTEYEVSLISRRGDMSSNPAKE 87
Score = 53.2 bits (128), Expect = 5e-09
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL 387
P E+KD + W PP P+ G+ + K P D + +
Sbjct: 6 PSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIG 61
Query: 388 DLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+L +YE +++ P+ T
Sbjct: 62 NLKPDTEYEVSLISRRGDMSSNPAKETF 89
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 64.0 bits (156), Expect = 1e-12
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P + L+W PEQ G I+ Y I EK + T
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQTNTA 65
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
++ L G Y +V A G G+ S
Sbjct: 66 RIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
Score = 55.5 bits (134), Expect = 8e-10
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
PS + + +TL W P+ G I Y + ++ + +
Sbjct: 6 SGPSTVPI-MHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQT 62
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
++GL P Y +VRA G S +
Sbjct: 63 NTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQ 98
Score = 53.6 bits (129), Expect = 4e-09
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 56 DPEGPLEVSNIHKDGCT-----LKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTRE 109
GP V +H+ T L W +P+ G + Y + Y+ E + + +++
Sbjct: 4 GSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQT 62
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGE---SEPLE 140
+ GL PG Y +V+A G S +
Sbjct: 63 NTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 96
Score = 35.5 bits (82), Expect = 0.010
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+L W PE G I Y + E + + R+ ID + ++
Sbjct: 25 TLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQ---- 79
Query: 580 SDTAQYTVTATNSQG 594
V A G
Sbjct: 80 -------VRARTVAG 87
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 68.9 bits (168), Expect = 1e-12
Identities = 37/298 (12%), Positives = 81/298 (27%), Gaps = 50/298 (16%)
Query: 442 SNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 500
+ + P W ND + + + L + + + DSG Y
Sbjct: 41 PQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCT 99
Query: 501 VKNSWGTDKGTAKVTVL---GCSLKWNPPEDD----GGAPIEYYMVEKMETDTGKVLIKW 553
+N+ DK + ++ V L + + + + D V I+W
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159
Query: 554 IRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTD 606
+ + + DN + T + + + D Y T + Q + + +
Sbjct: 160 YK-DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 607 KPSAPEGPIQWLLTLTDVT--------------------------WEISNYLQELHSSLM 640
K E + L ++ W ++ E
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKI-TIRPLQRSDT-AQYTVTATNSQGKDQVFIEV 696
++ + + +N +Y P+ R D + N+ + V
Sbjct: 279 RVTEG-----PRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 55.1 bits (132), Expect = 3e-08
Identities = 25/175 (14%), Positives = 54/175 (30%), Gaps = 22/175 (12%)
Query: 551 IKWIRTNDKRVTIDNVDYFT-----KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ W + + R + + + P + D+ Y T N+ D++ IE+ V
Sbjct: 57 LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF 116
Query: 606 DKPSAPEGPI---QWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
+ A I Q L T + + + Q+ + + DN +
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV---KIQWYKDSLLLDKDNEKF 173
Query: 663 F-----TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTDKPSAPE 706
T + + + D Y T + Q + + + + + P
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPV 228
Score = 37.4 bits (86), Expect = 0.014
Identities = 27/169 (15%), Positives = 43/169 (25%), Gaps = 28/169 (16%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD------SVEVEVIVLDKPSPPG-- 227
K + T L V DAG+Y + S+E+ + + + P
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230
Query: 228 GPLKVSNVHA-EGVTLDWKVPDDDG------------GQPIEKYVVDKMDEATGRWTPAG 274
PLK + +T+ KV G IE R +
Sbjct: 231 SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE 290
Query: 275 ETEGPVTG-LEVEGLIPNH-KYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
E + L + + F+ N T K
Sbjct: 291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS-----FQTLRTTVKEH 334
Score = 37.0 bits (85), Expect = 0.017
Identities = 10/77 (12%), Positives = 27/77 (35%)
Query: 165 RSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
+++ + + + L + A + D+G Y T N + D + +E+ V +
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 225 PPGGPLKVSNVHAEGVT 241
+ + +
Sbjct: 121 AFLPFISYPQILTLSTS 137
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 64.1 bits (156), Expect = 1e-12
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYV 259
+ + + D E P L+V + + W P + Y
Sbjct: 7 HHSSDYKDDD-DKGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAPAV----TVRYYR 60
Query: 260 VDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ + G + + GL P Y V AV + SI +
Sbjct: 61 ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 54.9 bits (132), Expect = 2e-09
Identities = 16/129 (12%), Positives = 25/129 (19%), Gaps = 11/129 (8%)
Query: 292 HKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQN 351
H + + P E+ + ++W P
Sbjct: 3 HHHHHHSSDYKDDDDKGENLYFQG-------SVSDVPTKLEVVAATPTSLLISWDAPA-- 53
Query: 352 GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
+ Y I E + G + L G Y V AV
Sbjct: 54 --VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 412 DPTAPHIAR 420
R
Sbjct: 112 SKPISINYR 120
Score = 51.8 bits (124), Expect = 2e-08
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW------IPVGKTR 108
+ P LEV + W+ P + Y + Y G +P K+
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAPAV----TVRYYRIT-YGETGGNSPVQEFTVPGSKST 83
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
++GL PG +Y V A+ SI R
Sbjct: 84 ---ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 63.5 bits (155), Expect = 1e-12
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 421 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 480
+ P+ + D+ V+ G D V G P P W + + K++ +
Sbjct: 5 SSGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63
Query: 481 ST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
L + D+GIYT N G + + ++ V
Sbjct: 64 GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA 102
Score = 45.1 bits (107), Expect = 4e-06
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W +R + + + + I P+ D YT ATN G++ +E+VV
Sbjct: 41 LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Query: 605 TDKPSAP 611
K S P
Sbjct: 101 AAKESGP 107
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG 227
DAG YT A N G++S +E++V K S P
Sbjct: 73 VTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
Score = 42.0 bits (99), Expect = 6e-05
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
I P+ D YT ATN G++ +E+VV K S P
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 63.6 bits (155), Expect = 1e-12
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
+PP L S+V + + W+ P+ V + G + E G T
Sbjct: 8 LAPPRH-LGFSDVSHDAARVFWEGAPR----PVRLVRVTY-VSSEGGHSGQTEAPGNATS 61
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTA 314
+ L + Y RV + G S LT
Sbjct: 62 AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 58.2 bits (141), Expect = 9e-11
Identities = 21/93 (22%), Positives = 27/93 (29%), Gaps = 13/93 (13%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTR 108
GL P L S++ D + W P+ V Y G P T
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAPR----PVRLVRVT-YVSSEGGHSGQTEAPGNAT- 60
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
+ L+ Y RV L G S L
Sbjct: 61 --SAMLGPLSSSTTYTVRVTCLYPGGGSSTLTG 91
Score = 49.0 bits (117), Expect = 2e-07
Identities = 12/91 (13%), Positives = 19/91 (20%), Gaps = 5/91 (5%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P D D + W P+ + + G+
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGG-HSGQTEAPGNATSA 62
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ L Y RV + GG
Sbjct: 63 MLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93
Score = 31.6 bits (72), Expect = 0.19
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 17/102 (16%)
Query: 514 VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKIT 573
V+ + W P+ V + ++ G + T
Sbjct: 19 VSHDAARVFWEGAPR----PVRLVRVTYVSSEGGHS---------GQTEAPGNA--TSAM 63
Query: 574 IRPLQRSDTA-QYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ PL S T VT G V T K +P
Sbjct: 64 LGPLS-SSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSG 104
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 64.0 bits (156), Expect = 2e-12
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
PG G + ++++W P + G + GY I +E T +
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEY 76
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+V L Y V A+ G G+ S T
Sbjct: 77 RVTGLTALTTYTIEVAAMTSKGQGQVSAST 106
Score = 57.4 bits (139), Expect = 2e-10
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
D P P G L S + + + W+ P + G + Y + +
Sbjct: 16 DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVTHYLPNVT 73
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTA 314
V GL Y V A+ +G S ++
Sbjct: 74 LEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
Score = 49.7 bits (119), Expect = 1e-07
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLV--EKYDPETGVWIPVGKTREPEM 112
P L S I + W +P + G L GY + E+Y+ E
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEY 76
Query: 113 DVTGLTPGHEYKFRVKALNKEGESEP 138
VTGLT Y V A+ +G+ +
Sbjct: 77 RVTGLTALTTYTIEVAAMTSKGQGQV 102
Score = 30.1 bits (68), Expect = 1.00
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W P + G + Y + E + + N + + L
Sbjct: 35 KVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT----------LEYRVTGLTA 83
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
T V A S+G+ QV + + P +
Sbjct: 84 LTTYTIEVAAMTSKGQGQVSASTISSGVPPSG 115
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 62.7 bits (153), Expect = 2e-12
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+V+P I L + G + E G P P W ++ T++ + + +++
Sbjct: 8 RVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN- 65
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
L + ++ D G+YT + G K A + G
Sbjct: 66 -LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ D N L +R ++ D G YT A ++ G VE I+
Sbjct: 55 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 36.9 bits (86), Expect = 0.004
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W + D + + + + +TIR +++ D YT A + G +V ++
Sbjct: 42 IMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
Query: 606 DKPSAPE 612
Sbjct: 100 GAQEKTN 106
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
L+ D + + + + +TIR +++ D YT A + G +V ++
Sbjct: 51 LVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 68.5 bits (166), Expect = 2e-12
Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 62/322 (19%)
Query: 49 VEKDRGLDPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVEKY--------DPETG 99
V + + P P ++ + +D L W+ ++ D
Sbjct: 101 VTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWED 160
Query: 100 VWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSS 159
I + T + + L P Y RV+ G S+ +
Sbjct: 161 AAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQ 220
Query: 160 LDSH------------------------------KRSNQPCGSGMVRKVQHLDYNTKLG- 188
+ K S + ++R+ + +
Sbjct: 221 PQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLG 280
Query: 189 ---------VRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG 239
+ + A G Y V+ + + ++ V + + +PP L+V+ +
Sbjct: 281 SLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNI--QMAPP--SLQVT-KDGDS 335
Query: 240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR 299
+L W+ + + + ET + + L P+ +Y RVR
Sbjct: 336 YSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVR 395
Query: 300 AVNKQGK--------SEPLTTT 313
+ SE +
Sbjct: 396 VRTSRTGYNGIWSEWSEARSWD 417
Score = 54.2 bits (129), Expect = 8e-08
Identities = 31/210 (14%), Positives = 62/210 (29%), Gaps = 13/210 (6%)
Query: 211 DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQP------IEKYVVDKMD 264
+ V + +P P L++S + L W V +E VV K
Sbjct: 97 TRLTVTLTQHVQPPEPRD-LQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRL 154
Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS---EPLTTTASIEAKNP 321
+ + + L E L+P+ Y RVR G P + + +
Sbjct: 155 QDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQ 214
Query: 322 FNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
+P E + +W ++ S V + + K + E +
Sbjct: 215 PGDEAQPQNLECFFDGAAVLSCSWEVRKEVASS--VSFGLFYKPSPDAGSAVLLREEECS 272
Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
P + ++ ++ + G+
Sbjct: 273 PVLREGLGSLHTRHHCQIPVPDPATHGQYI 302
Score = 49.2 bits (116), Expect = 3e-06
Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 41/327 (12%)
Query: 286 EGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAW 345
+IP + PL T ++ QP +P +I F+ L W
Sbjct: 71 RCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHV-QPPEPRDLQISTDQDHFL-LTW 128
Query: 346 TPP-EQNGGSPIVGYIIEKKEKYSPIWEKCAQ-----TEGDTPKGKVLDLIEGNQYEFRV 399
+ + +E + Y + + + L+ + Y RV
Sbjct: 129 SVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARV 188
Query: 400 LAVNKGGPGEPSDPTAP-----------HIARAKKVSPYINRDQLSDIKVRAGSNFEFDI 448
G P+ A+ + + + + + +
Sbjct: 189 RTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSV 248
Query: 449 N------VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 502
+ + + + + ++ ++ ++ V D G Y ++V+
Sbjct: 249 SFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPA--THGQYIVSVQ 306
Query: 503 NSWGTDKGTA-----------KVTVLG--CSLKWNPPEDDGGAPIEYYMVE-KMETDTGK 548
+ +VT G SL+W + + ++ + +T T K
Sbjct: 307 PRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWK 366
Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIR 575
N + + ++ T+ R
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWAR 393
Score = 48.8 bits (115), Expect = 4e-06
Identities = 20/191 (10%), Positives = 53/191 (27%), Gaps = 7/191 (3%)
Query: 237 AEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKF 296
A ++ W+V + + + E L + ++
Sbjct: 231 AAVLSCSWEVRKEVASSVS--FGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHC 288
Query: 297 RVRAVNKQGKSEPLTTTASIEAKNPFNQPG--KPGTPEIK-DFDTDFVELAWTPPEQNGG 353
++ + + + + A+ + P ++ D D L W +
Sbjct: 289 QIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYE 348
Query: 354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA--VNKGGPGEPS 411
+ I+ ++ + + +T + + L +Y RV G G S
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWS 408
Query: 412 DPTAPHIARAK 422
+ + +
Sbjct: 409 EWSEARSWDTE 419
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 65.2 bits (159), Expect = 2e-12
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 24/190 (12%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVF 487
R+ +S + + G + E V P P WL ++ +T IS +RF ++ ++ L++
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQIL 62
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE-DDGGAPIEYYMVEKMETD- 545
+ + D GIY + + + V+ PP E
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERGEEMTF 118
Query: 546 ----TG--KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 594
+G + I W R +++ + + T++T+R + SD Y ATN G
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAG 176
Query: 595 KDQVFIEVVV 604
+D+ + V
Sbjct: 177 EDEKQAFLQV 186
Score = 60.6 bits (147), Expect = 1e-10
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 424 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
V P I+ Q + G F G P P W N I +++ + +
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE- 153
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
L V + D G Y N G D+ A + V
Sbjct: 154 -LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 50.5 bits (121), Expect = 3e-07
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 41/171 (23%)
Query: 551 IKWIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVV 603
+ W+ +++ VT + + F + I + +SD Y + F I V+
Sbjct: 34 VSWLY-HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92
Query: 604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE----------------SQ 647
V P+ I + T E ++ +
Sbjct: 93 VNVPPA-----ISMPQKSFNATAERG----------EEMTFSCRASGSPEPAISWFRNGK 137
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ +++ + + T++T+R + SD Y ATN G+D+ + V
Sbjct: 138 LIEENEKYILKGSN--TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 40.1 bits (94), Expect = 8e-04
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
K NT+L VR +D G Y A N G+D + + V
Sbjct: 143 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 30.9 bits (70), Expect = 0.95
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGK--DSVEVEVIVLDKPSPPGGPLKVSNVHA 237
+ N L + ++D G Y D ++ VIV P+ +
Sbjct: 52 AMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE 111
Query: 238 EG--VTLD 243
G +T
Sbjct: 112 RGEEMTFS 119
Score = 30.1 bits (68), Expect = 1.8
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVF--IEVVVTDKP--SAPEGPIQI 711
+ I + +SD Y + F I V+V P S P+
Sbjct: 59 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 62.9 bits (153), Expect = 2e-12
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
S P L+V + + + W ++ Y + + G +
Sbjct: 8 SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ GL P Y V A + + SI +
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 55.1 bits (133), Expect = 1e-09
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P E+ D ++++W + + Y I E + G
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ L G Y V A + PG +
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPI 97
Score = 51.7 bits (124), Expect = 2e-08
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREP---E 111
P LEV + + W+ ++ Y + Y G T
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRIT-YGETGGDSPVQEFTVPGYYST 65
Query: 112 MDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
++GL PG +Y V A + + SI R
Sbjct: 66 ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 31.3 bits (71), Expect = 0.24
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK-RVTIDNVDYFTKITIRPLQ 578
+ W+ ++YY + ET + ++ TI + TI
Sbjct: 25 KISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTIT--- 80
Query: 579 RSDTAQYTVTATNSQGK 595
V A ++
Sbjct: 81 --------VYAYDTFFP 89
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 61.9 bits (151), Expect = 4e-12
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L D V G + E + P WL + I ++ +V + L + +
Sbjct: 14 PLEDQWVAPGEDVELRCELSRAGTPVH-WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D+G YT V+ K TA + V
Sbjct: 73 KDAGEYTCEVEA----SKSTASLHV 93
Score = 36.1 bits (84), Expect = 0.005
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ W++ ++ + + IR D +YT S+ + V
Sbjct: 39 VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVE 94
Query: 606 DKPSAPE 612
+K S P
Sbjct: 95 EKASGPS 101
Score = 35.4 bits (82), Expect = 0.008
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
+ ++ + + IR D +YT S+ + V +K S P
Sbjct: 48 IRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKASGPS 101
Score = 34.2 bits (79), Expect = 0.028
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
L +R A DAG YT E + V +K S P
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKS----TASLHVEEKASGP 100
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 65.3 bits (159), Expect = 4e-12
Identities = 27/226 (11%), Positives = 61/226 (26%), Gaps = 34/226 (15%)
Query: 405 GGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND 464
G ++ + R I V AG + G P +W +
Sbjct: 2 GSSHHHHHHSSGLVPRG----SKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN 56
Query: 465 ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLG--CSL 521
I + + +++L D+G Y V N++ + +++ V S
Sbjct: 57 KEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107
Query: 522 KWNPPEDDGGAPIEYYMVEKMETDTGKVL-------------IKWIRTNDKRVTIDNVDY 568
+ + + G L +W + N+ +T +
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETKKL 166
Query: 569 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ + + Y N + ++ D+ + P
Sbjct: 167 YM---VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209
Score = 44.9 bits (106), Expect = 3e-05
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 10/120 (8%)
Query: 409 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII 468
+ + + + I + + K+ GS +G PIP +W N++ +
Sbjct: 102 DIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160
Query: 469 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED 528
+ + V G Y V N + ++ P++
Sbjct: 161 HETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDN 211
Score = 44.1 bits (104), Expect = 6e-05
Identities = 17/170 (10%), Positives = 50/170 (29%), Gaps = 22/170 (12%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS 609
+W + +K + N +++ + D Y N+ + + ++ V D P
Sbjct: 50 YQWFK-MNKEIPNGNT---SELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105
Query: 610 APEGPIQWLLTLTDVTWEISNYLQELHSSL-MPISLESQY----------LMNDKRVTID 658
+ + + +++ +I + L+ N+ +T +
Sbjct: 106 SFQRSVD---GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 162
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ + + Y N + ++ D+ + P
Sbjct: 163 TKKLYM---VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHP 209
Score = 36.0 bits (83), Expect = 0.025
Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 24/148 (16%)
Query: 192 AQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD 250
DAGFY N + S ++ V D P + + + +
Sbjct: 72 VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV-------- 123
Query: 251 GGQPIEKYVVDKMD-----EATG------RWTPAGETEGPVTG--LEVEGLIPNHKYKFR 297
+P + ++ A G +W T V + H+ +
Sbjct: 124 --EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYW 181
Query: 298 VRAVNKQGKSEPLTTTASIEAKNPFNQP 325
N + + I+ N P
Sbjct: 182 CHVYNDRDSQDSKKVEIIIDELNNLGHP 209
Score = 35.6 bits (82), Expect = 0.036
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIVLDKPSPP 226
V G Y N +DS +VE+I+ + +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
Score = 30.2 bits (68), Expect = 1.9
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPSAPEGPIQ 710
+ D Y N+ + + ++ V D P + + +
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 62.4 bits (152), Expect = 4e-12
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P + + V L W PEQ G I+ Y I+ EK + + + T +
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYSTLKAVTTRA 68
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
V L G +Y F+V A G G S
Sbjct: 69 TVSGLKPGTRYVFQVRARTSAGCGRFSQAM 98
Score = 56.2 bits (136), Expect = 6e-10
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPV 280
PS ++ V+L W+ P+ G I +Y + K E +
Sbjct: 9 AAPSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEI-KYYEKDKEMQSYSTLKAVT 65
Query: 281 TGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
T V GL P +Y F+VRA G S+ +
Sbjct: 66 TRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVE 101
Score = 50.0 bits (120), Expect = 9e-08
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIP-VGKTREPEMDVTGLTPGHEYKFRVKAL 130
+L W +P+ G + Y ++ Y+ + + K V+GL PG Y F+V+A
Sbjct: 28 SLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRAR 86
Query: 131 NKEGESEPLETFS 143
G +
Sbjct: 87 TSAGCGRFSQAME 99
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
SL W PE G I Y ++ E D ++ R T+ + T+ +
Sbjct: 28 SLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQ---- 82
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVV--TDKPSAP 611
V A S G F + + T KPS P
Sbjct: 83 -------VRARTSAG-CGRFSQAMEVETGKPSGP 108
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 65.2 bits (159), Expect = 4e-12
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 34/207 (16%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK-LKVFDS 489
+ + VR G F G+P P+ W N + ++ R+ ++ L++
Sbjct: 12 KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 490 KRG-DSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTG 547
+ G D Y +N G A +T+ + G P+ + + T
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTIYE------GDKTPAGFPV---ITQGPGTRVI 122
Query: 548 KV----------------LIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVT 588
+V I WI+ N +V + N Y K + I + D +Y
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Query: 589 ATNSQGKDQVF-IEVVVTDKPSAPEGP 614
A NS G + + V + +
Sbjct: 182 AENSMGTEHSKATNLYVKVRRVGTKHH 208
Score = 50.9 bits (122), Expect = 3e-07
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 485
P I + G IG P P W+ N + + + D L+
Sbjct: 111 PVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQ 166
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTA-KVTVL 517
+ +S+ D G Y +NS GT+ A + V
Sbjct: 167 IENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
Score = 46.7 bits (111), Expect = 6e-06
Identities = 26/191 (13%), Positives = 44/191 (23%), Gaps = 53/191 (27%)
Query: 551 IKW------IRTNDKRVTI---DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFI 600
I W + R T+ +I D A Y A N G
Sbjct: 38 IVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAG-RDDAPYECVAENGVGDAVSADA 96
Query: 601 EVVVTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSS 638
+ + + P G + W + ++ S
Sbjct: 97 TLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ--TKVDMS 154
Query: 639 LMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVV 697
SL+ +L I + D +Y A NS G + +
Sbjct: 155 NPRYSLKDGFLQ-----------------IENSREEDQGKYECVAENSMGTEHSKATNLY 197
Query: 698 VTDKPSAPEGP 708
V + +
Sbjct: 198 VKVRRVGTKHH 208
Score = 37.5 bits (87), Expect = 0.007
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVH 236
++ + L + ++ D G Y AEN G + S + V + + H
Sbjct: 157 RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHH---HHHH 212
Score = 30.5 bits (69), Expect = 1.5
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 196 DAGFYTVTAENINGKD-SVEVEVIVLDKPSPPGGP 229
D Y AEN G S + + + + P G
Sbjct: 76 DDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF 110
Score = 28.6 bits (64), Expect = 6.2
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 650 MNDKRVTI---DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPSAP 705
R T+ +I D A Y A N G + + + P
Sbjct: 49 GTQSRYTVLEQPGGISILRIEPVRAG-RDDAPYECVAENGVGDAVSADATLTIYEGDKTP 107
Query: 706 EGPIQI 711
G I
Sbjct: 108 AGFPVI 113
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 63.7 bits (155), Expect = 4e-12
Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
+N V PY + + D++V GS FD V G P P W
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMW 75
Query: 461 LCNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGC 519
+D + F+I D++ L + + D YT NS G TA++ V
Sbjct: 76 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV--- 132
Query: 520 SLKWNPPEDDGGAPIEYYMVEKME 543
+G E E+ E
Sbjct: 133 ----ETMGKEGEGEGEGEEDEEEE 152
Score = 40.6 bits (95), Expect = 4e-04
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W ++ + + + +TI + D A+YT A NS G+ E++V
Sbjct: 73 VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Query: 605 TDKPSAPEGPIQ 616
EG +
Sbjct: 133 ETMGKEGEGEGE 144
Score = 39.8 bits (93), Expect = 7e-04
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
TI + D A+YT A NS G+ E++V EG +
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEG 145
Score = 37.9 bits (88), Expect = 0.004
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
L + D YT A N G+ + E++V G
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGE 142
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 61.5 bits (150), Expect = 5e-12
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSK 490
++ V GS+ F + V+G+P P EW N + I DR +D +L + D
Sbjct: 11 RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70
Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
DS + N G A + V
Sbjct: 71 GEDSASIMVKAINIAGETSSHAFLLV 96
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+W I +D+ D ++ IR + D+A V A N G+ ++V
Sbjct: 37 CEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Query: 605 TDK 607
K
Sbjct: 97 QAK 99
Score = 34.2 bits (79), Expect = 0.022
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
IR + D+A V A N G+ ++V K
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 33.4 bits (77), Expect = 0.047
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
L +R D+ V A NI G+ S ++V K
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 61.6 bits (150), Expect = 5e-12
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L+D V G + W N + + DR K+V + KL + ++
Sbjct: 13 PLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALT 70
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVL 517
D G Y A AKV V+
Sbjct: 71 EDEGDYVFAPDA--YNVTLPAKVHVI 94
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 7/70 (10%)
Query: 546 TGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
+ + KW + R+ + K+ I D Y +
Sbjct: 32 SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPA 89
Query: 601 EVVVTDKPSA 610
+V V PS+
Sbjct: 90 KVHVISGPSS 99
Score = 34.2 bits (79), Expect = 0.020
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
+ R+ + K+ I D Y + +V V PS+
Sbjct: 46 VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPSS 99
Score = 33.5 bits (77), Expect = 0.046
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
KL + A D G Y + ++ +V V+ PS
Sbjct: 62 KLVIANALTEDEGDYVFAPD--AYNVTLPAKVHVISGPS 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 62.0 bits (151), Expect = 6e-12
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 417 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKI 475
H + K +P + KV G + + + + P P W N+ + + DR +
Sbjct: 7 HHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65
Query: 476 V-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
++ L + D + D+G YT++ N G ++ V
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 43.9 bits (104), Expect = 1e-05
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 551 IKW------IRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
+ W ++ N R+++ + + I+ + + D YTV+A N G +
Sbjct: 47 LFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 604 VTDKPS 609
VT +P+
Sbjct: 107 VTARPN 112
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 650 MNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
N R+++ + + I+ + + D YTV+A N G + VT +P+
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
L ++ + DAG+YTV+A N G + + V +P+
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 66.4 bits (161), Expect = 6e-12
Identities = 40/305 (13%), Positives = 97/305 (31%), Gaps = 41/305 (13%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTK---EWLCNDITIISKDRFKIVNDD 479
++ ++ Q + AG F V G EP+P+ W +D ++
Sbjct: 1 MAFTVSI-QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------EN 49
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLK---WNPPEDD---GGAP 533
+ L V D+ ++G Y + V+++ ++V ++ + P+
Sbjct: 50 NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
+E + K + + + D +D ITI+ YTV
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGE-DVIDTTQDITIQEFTADKNGVYTVKVWGES 168
Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLT-----DVTWEISNYLQELHSSLMPISLESQY 648
+ + + T+ + + +S + S + ++++ +
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNW 228
Query: 649 LMNDKRVTI---------DNVDYFT-----KITIRPLQRSDTAQYTVTATNSQGKDQVFI 694
+ + + ++ F+ + DTA++ A Q + +
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288
Query: 695 EVVVT 699
EV +
Sbjct: 289 EVAAS 293
Score = 53.3 bits (127), Expect = 1e-07
Identities = 28/174 (16%), Positives = 51/174 (29%), Gaps = 12/174 (6%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP---GGPLKVSNVHAEGV 240
L V A +AG Y VT ++ + SVE EV ++++ P V
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 241 TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
L V G P E W+ + + ++ + + V+
Sbjct: 111 ELHATVKFSGGKTP------ADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKV 164
Query: 301 VNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS 354
+ S +AS + + + + L + E G
Sbjct: 165 WGESEDS---AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
Score = 52.1 bits (124), Expect = 2e-07
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 5/140 (3%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE--GPIQWLLTLTDVTWEIS 629
+T+ + Y VT ++ V EV + ++ Q + E+
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 630 NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
++ + E Y + ID ITI+ YTV
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDTT---QDITIQEFTADKNGVYTVKVWGESED 170
Query: 690 DQVFIEVVVTDKPSAPEGPI 709
+ + +
Sbjct: 171 SAASASTKIMLATMNVDQDV 190
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 66.9 bits (163), Expect = 7e-12
Identities = 30/299 (10%), Positives = 82/299 (27%), Gaps = 52/299 (17%)
Query: 432 QLSDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITII-----SKDRFKIVNDDKSTK 483
++ V G++ + + + + W ++ ++ + S +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV---LPSGE 165
Query: 484 LKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
L + + D Y K+ G +++ L P + + +
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLT---GETRLSATKGRLVITEPISSSAPRTPALVQKPL 222
Query: 543 ETDTGKVL-------------IKWIRTNDKRVTIDNVDYFTKI-------TIRPLQRSDT 582
E + +W + + V ++ I+ D+
Sbjct: 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 282
Query: 583 AQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSL 639
+Y NS G + V + VT + T + + +
Sbjct: 283 GKYLCVVNNSVGGESVETVLTVTAPL-------SAKIDPPTQTVDFGRPAVFTCQYTGNP 335
Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ ++ + K + + + I +++ D Y N + + E+ +
Sbjct: 336 IK---TVSWMKDGKAIGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 60.3 bits (146), Expect = 9e-10
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 30/224 (13%)
Query: 396 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIG 452
++ ++ T + + +S P +++ G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238
Query: 453 EPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 510
P P+ W K + + S L + D+ DSG Y V NS G +
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298
Query: 511 TAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV----------LIKWIRTNDKR 560
+TV P A I+ + W++ + K
Sbjct: 299 ETVLTVTA------PLS----AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKA 347
Query: 561 VTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ + + I +++ D Y N + + E+ +
Sbjct: 348 IGHSE----SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 58.0 bits (140), Expect = 5e-09
Identities = 55/378 (14%), Positives = 99/378 (26%), Gaps = 57/378 (15%)
Query: 159 SLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEV 217
R G + + DY Q A Y A N G S +V V
Sbjct: 47 GDVPGLRQISSDGKLVFPPFRAEDYR--------QEVHAQVYACLARNQFGSIISRDVHV 98
Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
+ K + + +P VV + + P E +
Sbjct: 99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIP---SFVADFVEVVSWHTDEEENYFPGAEYD 155
Query: 278 GPVT-----GLEVEGLIPNHKY-KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTP 331
G L + + P Y ++ R ++ L+ T P TP
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTP 215
Query: 332 EIKDFDTDFVE--------LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
+ + + A G P + K + + + +
Sbjct: 216 ALVQKPLELMVAHTISLLCPA-------QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268
Query: 384 GKVLDLIEGNQYE----FRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKV 438
L +I+ E + + N G + V
Sbjct: 269 SGTL-IIKDAVVEDSGKYLCVVNNSVG-------GESVETVLTVTAPLSA-KIDPPTQTV 319
Query: 439 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 498
G F G PI T W+ + I + L++ K+ D G+Y
Sbjct: 320 DFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQ 369
Query: 499 LAVKNSWGTDKGTAKVTV 516
V+N + + +A++ +
Sbjct: 370 CFVRNDRESAEASAELKL 387
Score = 57.6 bits (139), Expect = 6e-09
Identities = 42/335 (12%), Positives = 92/335 (27%), Gaps = 70/335 (20%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKS 481
+ P ++ + I + E + G P+P W+ +D T + + ++ D
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 482 ---TKLKVFDSKR-GDSGIYTLAVKNSWGTDK-GTAKVTV----------------LGCS 520
+ D ++ + +Y +N +G+ V G S
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 521 --LKWNPPEDDGGAPIEYY-MVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
+K P + + D + + ++ IR +
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTD------EEENYFPGAEYDGKYLVLPS---GELHIREV 171
Query: 578 QRSDT-AQYTVTATNSQGKDQV---FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ 633
D Y + + +V +P + P L +
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE-------L 224
Query: 634 ELHSSLM--------------------PISLESQYLMNDKRVTIDNVDYFTKITIRPLQR 673
+ ++ + + ++ND+ + + I+
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-----LIIKDAVV 279
Query: 674 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
D+ +Y NS G + V + VT SA P
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP 314
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 61.9 bits (150), Expect = 1e-11
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 16/136 (11%)
Query: 208 NGKDSVEVEV-IVLDKPSPPGGPLKVSNVHAEGVTLDWKVP--------DDDGGQPIEKY 258
+ S + E S P S++ A V L W P D+ + Y
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGY 60
Query: 259 VVDKMDEAT-GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
V G++ G T + + L P Y +V+A K P + +
Sbjct: 61 EVLISSTGKDGKYKS--VYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEI 115
Query: 318 AKNPFNQPGKPGTPEI 333
+P P P I
Sbjct: 116 FTTLSCEPDIPNPPRI 131
Score = 60.4 bits (146), Expect = 4e-11
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 312 TTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGS--------PIVGYIIEK 363
++ E K P D V L W+PP + GY +
Sbjct: 5 SSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64
Query: 364 KEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
K G+ + DL Y +V A G PS+
Sbjct: 65 SSTGKDGKYKSVYV-GEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Score = 57.7 bits (139), Expect = 3e-10
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGG--------EPLEGYLVEKYDP-ETGVWIPVG 105
L S+I L W+ P L GY V + G + V
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77
Query: 106 KTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
E + + L P +Y +V+A + P E
Sbjct: 78 VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI 115
Score = 30.0 bits (67), Expect = 1.3
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L W+PP + V ++ G ++ D + V T IT+ L+
Sbjct: 35 VLTWSPPSSLINGETDESSVPEL---YGYEVLISSTGKDGKYKSVYVGEETNITLNDLKP 91
Query: 580 SDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ V A + K + T P+ P
Sbjct: 92 AMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 63.3 bits (154), Expect = 1e-11
Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 39/198 (19%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIV---NDDKSTKLKVF 487
S ++ G + F V G+ W + +S ++ +I NDD S+ L ++
Sbjct: 8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 488 DSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPED----DG----------GA 532
++ D+GIY V GT + T V + + N P +G +
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI-----TIRPLQRSDTAQYTV 587
I W + V + F + IR ++++D Y
Sbjct: 128 L--------------PPTIIWKH-KGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Query: 588 TATNSQGKDQVFIEVVVT 605
+ F ++ V
Sbjct: 173 EGRILARGEINFKDIQVI 190
Score = 51.4 bits (123), Expect = 1e-07
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 480
++ + + + G + +V+ PT W + + RF ++++
Sbjct: 98 FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-- 154
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
L++ K+ D G Y + + + V+
Sbjct: 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 48.7 bits (116), Expect = 1e-06
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 23/164 (14%)
Query: 551 IKWIRTN-------DKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQ-VFIE 601
I W N +R+++ D + +TI D Y T G +
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Query: 602 VVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTIDNV 660
V + K P + + ++ SSL P + + V +
Sbjct: 95 VKIFQKLMFKNAPTP-----QEFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVILKKD 146
Query: 661 DYFTKI-----TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
F + IR ++++D Y + F ++ V
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 36.3 bits (84), Expect = 0.014
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPS 224
+ V + D ++ L + A DAG Y +G V V + K
Sbjct: 52 ISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM 102
Score = 34.0 bits (78), Expect = 0.078
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 651 NDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
N +R+++ D + +TI D Y T G + V + K P
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Score = 33.6 bits (77), Expect = 0.14
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
N L +R ++ D G Y + + ++ V+
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 60.4 bits (147), Expect = 1e-11
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
+V+P + L D V G +F +V G P+P WL N I R
Sbjct: 9 EVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTCEAGVAE- 65
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
L + D+ D G YT +N+ G +A VTV
Sbjct: 66 -LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 34.6 bits (80), Expect = 0.016
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI---TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
I W+ N + + + I+ D YT A N+ G+ V V
Sbjct: 43 ITWLL-NGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 33.4 bits (77), Expect = 0.046
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
L ++ A D G YT AEN G+ S V V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 33.1 bits (76), Expect = 0.066
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
I+ D YT A N+ G+ V V
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 60.5 bits (147), Expect = 2e-11
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 338 TDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGNQY 395
V ++W PP + G I YI+ + + GD +++DL Y
Sbjct: 24 PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMY 82
Query: 396 EFRVLAVNKGGPGEPSDP 413
FR+ A N G G SDP
Sbjct: 83 YFRIQARNSKGVGPLSDP 100
Score = 52.0 bits (125), Expect = 2e-08
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 223 PSPPGGP-LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---DKMDEATGRWTPAGETEG 278
S P + V + W+ P + G I Y++ + W G
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISG 66
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
++ L + Y FR++A N +G
Sbjct: 67 DRLTHQIMDLNLDTMYYFRIQARNSKGVGPL 97
Score = 43.9 bits (104), Expect = 1e-05
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFRV 127
+ W P + G + Y++ + WI + L Y FR+
Sbjct: 28 IVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRI 86
Query: 128 KALNKEGESEP 138
+A N +G
Sbjct: 87 QARNSKGVGPL 97
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 2e-11
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 217 VIVLDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE 275
LD+ P P + + + W P + + Y++ + T
Sbjct: 9 ENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAET--VR 65
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ +E L + Y ++A N G+ PL +A+
Sbjct: 66 VDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105
Score = 58.6 bits (142), Expect = 1e-10
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P +P + ++ T+ + ++WTPP + GYII SP E + +
Sbjct: 18 PDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVG-SPYAET-VRVDSKQRYY 73
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ L + Y + A N G G P +A
Sbjct: 74 SIERLESSSHYVISLKAFNNAGEGVPLYESA 104
Score = 53.6 bits (129), Expect = 5e-09
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
+ W P + + GY++ +++ + L Y +KA N
Sbjct: 34 IMSWTPPLNPNI-VVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFN 92
Query: 132 KEGESEPLET 141
GE PL
Sbjct: 93 NAGEGVPLYE 102
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W PP + + Y +I + + T+ +I L+
Sbjct: 34 IMSWTPPLNPNI-VVRGY------------IIGYGVGSPYAETVRVDSKQRYYSIERLES 80
Query: 580 SDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAPE 612
S ++ A N+ G+ ++ S P
Sbjct: 81 SSHYVISLKAFNNAGEGVPLYESATTRSITSGPS 114
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 59.8 bits (145), Expect = 2e-11
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VN 477
+P I + + ++ V G P P +W N + +
Sbjct: 2 HFAPTITFLE----SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+ L++ + ++G YTL KN +G D+ +G
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 48.2 bits (115), Expect = 3e-07
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
H +Y+ L + + G YT+ A+N GKD ++ + P
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 46.7 bits (111), Expect = 1e-06
Identities = 13/62 (20%), Positives = 23/62 (37%)
Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
G +L + K ++ +Y + + + YT+ A N GKD+ I
Sbjct: 39 GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Query: 607 KP 608
P
Sbjct: 99 WP 100
Score = 44.7 bits (106), Expect = 6e-06
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
++ K ++ +Y + + + YT+ A N GKD+ I
Sbjct: 40 AILNESKYICT--KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
Query: 700 DKP 702
P
Sbjct: 98 GWP 100
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 62.1 bits (151), Expect = 3e-11
Identities = 42/208 (20%), Positives = 63/208 (30%), Gaps = 40/208 (19%)
Query: 419 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVN 477
A +P I L + F V P P W N I I D R+ I
Sbjct: 1 AEKLPKAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 478 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLGCSLKWNPPEDDGGAPIEY 536
+ L + + D GIY N G + + V P+ I
Sbjct: 60 NG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM------KPK------ITR 105
Query: 537 YMVEKMETDTGKVL------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQR 579
+ + K + + WI+ + R+ + + I +Q+
Sbjct: 106 PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQK 162
Query: 580 SDTAQYTVTATNSQGKDQ---VFIEVVV 604
D QY A NS G V +EV V
Sbjct: 163 EDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 49.0 bits (117), Expect = 1e-06
Identities = 36/172 (20%), Positives = 53/172 (30%), Gaps = 44/172 (25%)
Query: 551 IKWIRTNDKRVTIDNVDYF-----TKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVV 604
I W R N + + + Y +TI ++ SD Y TA N G + + V
Sbjct: 39 ISWTR-NKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQV 97
Query: 605 TDKPSAPEGPIQWLLTLTD---------------VTWEISNYLQELHSSLMPISLESQYL 649
KP PI + V+W L
Sbjct: 98 KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW----------------IKGDSAL 141
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ---VFIEVVV 698
+ R+ + + I +Q+ D QY A NS G V +EV V
Sbjct: 142 RENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 34.3 bits (79), Expect = 0.069
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD-QVFIEVVVTDKPS 703
+ D R +I +TI ++ SD Y TA N G + + V KP
Sbjct: 50 LFDTRYSIRENG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK 102
Score = 33.9 bits (78), Expect = 0.084
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKD---SVEVEVIVL 220
+ L + Q+ DAG Y A+N G V++EV V
Sbjct: 152 SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 32.4 bits (74), Expect = 0.33
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPS 224
+ + L + + +D G Y TA N G + V KP
Sbjct: 53 TRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPK 102
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 59.6 bits (145), Expect = 3e-11
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L D++V G + P K W + + D++ + + +L V + +
Sbjct: 14 ALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
DSG Y+ + G +A +TV
Sbjct: 73 QDSGRYSCSF----GDQTTSATLTV 93
Score = 34.6 bits (80), Expect = 0.017
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+KW + ++ ++ +R L+ D+ +Y+ + G + VT
Sbjct: 39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATLTVT 94
Query: 606 DKPSAP 611
PS P
Sbjct: 95 ALPSGP 100
Score = 34.6 bits (80), Expect = 0.021
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 609 SAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPIS--LESQYLMNDKRVTIDNVDYF 663
S GP+++ L D+ L S P+ + L + ++
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAM 62
Query: 664 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
++ +R L+ D+ +Y+ + G + VT PS P
Sbjct: 63 LELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
Score = 31.5 bits (72), Expect = 0.20
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+L VR + D+G Y+ + G + + V PS P
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 62.2 bits (151), Expect = 3e-11
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 44/207 (21%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDK 480
+ P I I + N+ W N + + + + +
Sbjct: 1 QNEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NAS 54
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
+ + ++ + DSG Y V + K A + V P+ I +
Sbjct: 55 NMEYRINKPRAEDSGEYH-CVYHFVSAPKANATIEVKA------APD------ITGHKRS 101
Query: 541 KMETDTGKVL------------IKWIR----------TNDKRVTIDNVDYFTKITIRPLQ 578
+ + + + W + + R I N + +T++ I LQ
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161
Query: 579 -RSDTAQYTVTATNSQGKDQVFIEVVV 604
D +Y ATNS G V + V
Sbjct: 162 ITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 44.1 bits (104), Expect = 4e-05
Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 36/168 (21%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
W + N +T + I + D+ +Y + + + V P
Sbjct: 37 SYWTK-NGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPD 94
Query: 610 ---------APEGPIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMN 651
EG + + W + + +
Sbjct: 95 ITGHKRSENKNEGQD---AMMYCKSVGYPHPEWMWRKKEN-----------GVFEEISNS 140
Query: 652 DKRVTIDNVDYFTKITIRPLQ-RSDTAQYTVTATNSQGKDQVFIEVVV 698
R I N + +T++ I LQ D +Y ATNS G V + V
Sbjct: 141 SGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 29.8 bits (67), Expect = 2.2
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
+ N + + + D+G Y + + V P
Sbjct: 50 RKNASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPD 94
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 177 KVQHLDYNTKLGVRMAQ-RADAGFYTVTAENINGKDSVEVEVIV 219
+ + + T+L + Q D G Y A N G SV + V
Sbjct: 145 FIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 651 NDKRVTIDNVDYFTKI-TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
N +T + I + D+ +Y + + + V P
Sbjct: 42 NGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPD 94
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.1 bits (146), Expect = 3e-11
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSK 490
L D+ V+ GS+ F + W + + + + +I L +
Sbjct: 19 DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78
Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
DSG G + +A + V
Sbjct: 79 LKDSGTIYFEA----GDQRASAALRV 100
Score = 30.4 bits (69), Expect = 0.72
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W + N+ + +T+R L D+ A G + + V
Sbjct: 45 VHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRV 100
Query: 605 TDKPS 609
T+KPS
Sbjct: 101 TEKPS 105
Score = 28.1 bits (63), Expect = 4.6
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 649 LMNDKRVTIDNVD-YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
L ++ ID + +T+R L D+ A G + + VT+KPS
Sbjct: 54 LHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPS 105
Score = 27.4 bits (61), Expect = 8.0
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
L +R D+G A G + V +KPS
Sbjct: 71 VLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPS 105
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 59.3 bits (144), Expect = 4e-11
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 432 QLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 490
+L ++V G + F+ + W T+ S RF+ + L V ++
Sbjct: 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73
Query: 491 RGDSGIYTLAVKNSWGTDKGTAKVTV 516
D+G +V+ A + V
Sbjct: 74 PSDAGEVVFSVRG----LTSKASLIV 95
Score = 33.5 bits (77), Expect = 0.038
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
L VR A +DAG + + K S+ V ++ P G
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTSKASLIVR----ERSGPSSG 104
Score = 33.5 bits (77), Expect = 0.043
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 9/68 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
W + R + +R SD + + K + V
Sbjct: 41 AMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASLI----VR 96
Query: 606 DKPSAPEG 613
++ G
Sbjct: 97 ERSGPSSG 104
Score = 33.1 bits (76), Expect = 0.066
Identities = 7/59 (11%), Positives = 16/59 (27%), Gaps = 4/59 (6%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
+ + R + +R SD + + K + V ++ G
Sbjct: 50 VGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGLTSKASLI----VRERSGPSSG 104
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 59.3 bits (144), Expect = 4e-11
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
++D+ V+A F V E + K W N + + R I + + KL + D +
Sbjct: 14 DIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVEVRPSKRITISHVGRFHKLVIDDVRP 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVL 517
D G YT + +AK+ L
Sbjct: 73 EDEGDYTFVPDGYALS--LSAKLNFL 96
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
KL + + D G YT + S ++ + + P G
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPSSG 106
Score = 36.2 bits (84), Expect = 0.005
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 548 KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 602
KV KW + KR+TI +V F K+ I ++ D YT +
Sbjct: 36 KVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNF 95
Query: 603 --VVTDKPSA 610
+ PS+
Sbjct: 96 LEIKVSGPSS 105
Score = 34.7 bits (80), Expect = 0.016
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV--VVTDKPSA 704
+ KR+TI +V F K+ I ++ D YT + + PS+
Sbjct: 48 VRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGPSS 105
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 59.3 bits (144), Expect = 4e-11
Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
G AP +L K+ G F V G P P W + I
Sbjct: 1 GSSGSSGAPFFEM-----------KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49
Query: 468 I-SKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
D + I D T L S D G YT+ N G T ++ V
Sbjct: 50 SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 44.7 bits (106), Expect = 7e-06
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 551 IKW------IRTNDKRVTI-DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
I W I TI ++D + D YT+ A N QG+ ++
Sbjct: 40 IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 604 VTDKPSAP 611
V S P
Sbjct: 100 VQAVNSGP 107
Score = 42.0 bits (99), Expect = 6e-05
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
+D ++D + D YT+ A N QG+ ++V S P
Sbjct: 53 SDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 40.4 bits (95), Expect = 2e-04
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG 227
L + D G YT+ A N G+ S ++V S P
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGPS 108
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 59.0 bits (143), Expect = 5e-11
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
P L+ V L W P Y++ G+ G +T
Sbjct: 7 GLEAPRD-LEAKEVTPRTALLTWTEPPV----RPAGYLL-SFHTPGGQTQEI-LLPGGIT 59
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS-IEAKNPFNQPG 326
++ GL P+ Y R++A+ Q P++T+ + + G
Sbjct: 60 SHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRISGPSSG 105
Score = 56.7 bits (137), Expect = 4e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 54 GLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
GL+ LE + L W +P GYL+ + P +
Sbjct: 7 GLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQEILLPGGITSHQ 62
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLET 141
+ GL P Y R++A+ + P+ T
Sbjct: 63 LLGLFPSTSYNARLQAMWGQSLLPPVST 90
Score = 47.1 bits (112), Expect = 8e-07
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 6/87 (6%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P E K+ L WT P GY++ E G
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQE--ILLPGGITSH 61
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS 411
++L L Y R+ A+ P
Sbjct: 62 QLLGLFPSTSYNARLQAMWGQSLLPPV 88
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 59.0 bits (143), Expect = 7e-11
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 13/121 (10%)
Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
G P I + + V F G P+PT W + + +
Sbjct: 1 GSSGSSGPPVIRQ-----------GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 49
Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
++D ++ L++ +K GD+G YT G +A + V + PP
Sbjct: 50 STQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPR 107
Query: 528 D 528
Sbjct: 108 P 108
Score = 41.3 bits (97), Expect = 1e-04
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
N L +R A+ D G YT A +G+ + + V + P P
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106
Score = 38.6 bits (90), Expect = 0.001
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 551 IKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
I W + + V+ + + IR + DT +YT A+ G+ + V +
Sbjct: 40 ILWRK-DGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Query: 607 KPSAPEGP 614
+ P
Sbjct: 99 FGVPVQPP 106
Score = 37.4 bits (87), Expect = 0.002
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
IR + DT +YT A+ G+ + V + + P
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP 106
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 58.5 bits (142), Expect = 7e-11
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
G A +L++++V F P T W + +
Sbjct: 1 GSSGSSGANCFTE-----------ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL 48
Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ + + + + +L + ++ DS YT + G + A++ V
Sbjct: 49 RASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ W + + ++TI L+++D+ YT G+ Q +++V
Sbjct: 39 VTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQ 94
Query: 606 DKPSAP 611
+ S P
Sbjct: 95 GRRSGP 100
Score = 31.5 bits (72), Expect = 0.24
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
L + ++TI L+++D+ YT G+ Q +++V + S P
Sbjct: 48 LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGP 100
Score = 29.6 bits (67), Expect = 1.0
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+L + ++AD+ YT G+ +++V + S P
Sbjct: 64 RLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGP 100
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 62.8 bits (152), Expect = 8e-11
Identities = 40/292 (13%), Positives = 87/292 (29%), Gaps = 56/292 (19%)
Query: 452 GEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509
E T W +D + ++ +I + L +K DSG Y V+NS +
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKVEDSGHYYCVVRNSSYCLR 89
Query: 510 GTAKVTVLGCSLKWNPPEDD--------GG------APIEYYMVEKMETDTGKVLIKWIR 555
+ G +E++ E E ++W
Sbjct: 90 IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPK----LQW-Y 144
Query: 556 TNDKRVTIDNVDYF---TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTD 606
+ K + +DN+ + ++ + + YT A+ + Q + + +
Sbjct: 145 KDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204
Query: 607 KPSAPE--GPIQWLLTLT-----------------DVTWEISNYLQELHSSLMPISLESQ 647
KP+ P P + + W+ + + + +
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG--SVIDEDDPVLGEDYY 262
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV 698
+ N T + I ++ +T A N+ G D +I+++
Sbjct: 263 SVENP--ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 48.2 bits (114), Expect = 5e-06
Identities = 23/176 (13%), Positives = 56/176 (31%), Gaps = 23/176 (13%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKIT-------IRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
I W + +D + + + + ++I P + D+ Y NS ++ I
Sbjct: 38 ITWYK-DDSKTPV-STEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
Query: 604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPIS----LESQYLMNDKRVTIDN 659
+ Q + + L + + Q+ + K + +DN
Sbjct: 96 FVENEPNLCYNAQ-AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN 154
Query: 660 VDYF---TKITIRPLQRSDTAQYTVTATNSQGKDQ------VFIEVVVTDKPSAPE 706
+ + ++ + + YT A+ + Q + + +KP+ P
Sbjct: 155 IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210
Score = 47.8 bits (113), Expect = 6e-06
Identities = 27/215 (12%), Positives = 54/215 (25%), Gaps = 45/215 (20%)
Query: 428 INRDQLSDIKVRAGSNFEF------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
N + K+ + +P +W + ++ + D+
Sbjct: 105 YNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR- 163
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
L V + G YT ++ + + I E
Sbjct: 164 --LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI---EFITLEENKPTRPVIVSPANET 218
Query: 542 METDTGKVL-------------IKWIRTNDKRVTIDN------------------VDYFT 570
ME D G + W N + D+ T
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPANKRRSTLIT 277
Query: 571 KITIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV 604
+ I ++ +T A N+ G D +I+++
Sbjct: 278 VLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 41.6 bits (97), Expect = 5e-04
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 418 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 477
+ K P I ++V GS + NV G+ W N I D +
Sbjct: 201 LEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 478 ------------DDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 516
T L + + + +T KN+ G D ++
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 36.6 bits (84), Expect = 0.025
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
+ P + D+ Y NS ++ I + Q
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA 109
Score = 35.5 bits (81), Expect = 0.049
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV 232
A+ D+G Y N + +++ ++ +
Sbjct: 69 AKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA 109
Score = 30.1 bits (67), Expect = 2.5
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENING------KDSVEVEVIVLDKPSPP 226
+L V G YT A +E + +KP+ P
Sbjct: 161 KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 63.8 bits (154), Expect = 8e-11
Identities = 41/225 (18%), Positives = 65/225 (28%), Gaps = 19/225 (8%)
Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS--NVHAEGVTLDWKVPDDDG--GQPIE 256
+ NI +V V+ PP P K+S + + W G G
Sbjct: 262 ENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNT 321
Query: 257 KYVVDKMDEATGRWT-PAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK--SEPLTTT 313
+Y + + L V+ + F + N G+ S +
Sbjct: 322 EYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINV 381
Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
A + P + ++KD ++ V +W P N + IE + S +
Sbjct: 382 TERVAPHD------PTSLKVKDINSTVVTFSWYLPG-NFTKINLLCQIEICKANSKKEVR 434
Query: 374 CAQ---TEGDTPKGKVLDLIEGNQYEFRVLAV--NKGGPGEPSDP 413
A E T V L Y FRV SD
Sbjct: 435 NATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDE 479
Score = 52.3 bits (124), Expect = 3e-07
Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 12/124 (9%)
Query: 200 YTVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE- 256
+T+T N G+ V + V + P P LKV ++++ VT W +P + +
Sbjct: 362 FTLTGRNPLGQAQSAVVINVTERVAPHDPTS-LKVKDINSTVVTFSWYLPGNFTKINLLC 420
Query: 257 --KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA-VNKQGK----SEP 309
+ + T G E + V+ L P Y FRVR K S+
Sbjct: 421 QIEICKANSKKEVRNATIRG-AEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDE 479
Query: 310 LTTT 313
Sbjct: 480 KRHL 483
Score = 44.9 bits (105), Expect = 7e-05
Identities = 52/414 (12%), Positives = 103/414 (24%), Gaps = 52/414 (12%)
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
+ + + + W P + I+ + E
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETT--------N 54
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSD-------PTAPHIARAKKVSPYINRDQLSDI 436
K+ L G+ +E + +N + P P I +S L
Sbjct: 55 VKIPALSPGD-HEVTINYLNGFQSKFTLNEKDVSLIPETPEI---LDLSADFFTSSLLLK 110
Query: 437 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSG 495
GS N E I ++ R + V +T L D+ + +
Sbjct: 111 WNDRGSALPHPSNATWE-----------IKVLQNPRTEPVALVLLNTMLSGKDTVQHWNW 159
Query: 496 IYTLAVKNSWGTDKGTAKVTVLGCS-----LKWNPPEDDGGAPIEYYMV--EKMETDTGK 548
L ++ + + + S W+P ++ V + G
Sbjct: 160 TSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGS 219
Query: 549 -VLIKWI-RTNDKRVTIDNVDYF------TKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
+ I + T I N + I L + D
Sbjct: 220 NMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGT 279
Query: 601 EVVVTDKPSAPEGPIQWLLTLTDVT--WEISNYLQELHSSLMPISLESQYLMNDKRVTI- 657
V P P+ L ++ W + +L
Sbjct: 280 VVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRI 339
Query: 658 -DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPEGP 708
+ ++ ++ + +T+T N G+ Q + + VT+ P P
Sbjct: 340 EGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSL 393
Score = 42.6 bits (99), Expect = 4e-04
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVW-----IPVGKTREPEMDVT 115
L+V +I+ T W P + L +E + I + + V
Sbjct: 393 LKVKDINSTVVTFSWYLPGNFTKINL-LCQIEICKANSKKEVRNATIRGAEDSTYHVAVD 451
Query: 116 GLTPGHEYKFRVKA 129
L P Y FRV+
Sbjct: 452 KLNPYTAYTFRVRC 465
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 58.7 bits (142), Expect = 9e-11
Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 443 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLKVFDSKRGDSGIYT 498
+ V G P PT WL N + + + L ++G YT
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 499 LAVKNSWGTDKGTAKVTVLG 518
L KN GT T L
Sbjct: 82 LIAKNPLGTANQTINGHFLK 101
Score = 53.3 bits (128), Expect = 9e-09
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSP-----PGGPLKVS 233
L + G YT+ A+N G + + L +P P P P+ V+
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118
Score = 47.9 bits (114), Expect = 5e-07
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 551 IKWIR-----TNDKRVTI----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
+ W+ K + + + + + YT+ A N G I
Sbjct: 37 LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96
Query: 602 VVVTDKPS-----APEGPI 615
+P +P PI
Sbjct: 97 GHFLKEPFPVDEVSPTPPI 115
Score = 47.9 bits (114), Expect = 6e-07
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 9/72 (12%)
Query: 649 LMNDKRVTI----DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS- 703
L K + + + + + YT+ A N G I +P
Sbjct: 46 LRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFP 105
Query: 704 ----APEGPIQI 711
+P PI +
Sbjct: 106 VDEVSPTPPITV 117
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 61.0 bits (148), Expect = 1e-10
Identities = 36/212 (16%), Positives = 69/212 (32%), Gaps = 29/212 (13%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKS 481
P I + +D+ V+ + V G+P PT EW + + + + R + +
Sbjct: 10 PRI-IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKW-NPPED-----DGGAPI 534
+ K D G Y KN G A + + + P+D A +
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 535 EYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK-----------ITIRPLQRSDTA 583
E + + + WI+ + + F + I ++ D
Sbjct: 129 ECGPPK----GIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 584 QYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 614
Y A N G + + +++V K +A
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 8/101 (7%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDK-- 480
+ + D +V G + G P PT W+ + + + +
Sbjct: 107 LRDDFRV-EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 481 ---STKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVL 517
L + + + D G Y +N GT + AK+ V
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
Score = 43.7 bits (103), Expect = 8e-05
Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 33/179 (18%)
Query: 552 KWIRTNDK---RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---QVFIEVVV- 604
+ + TN+K RV + F T++ + D +Y A N G+ +++ V
Sbjct: 48 EPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Query: 605 ----TDKPSAPEGPIQWLLTLT----------DVTWEISNYLQELHSSLMPISLESQYLM 650
+P L + W + +
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG-------VPLDDLKAMSFGA 160
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 708
+ + +D + I ++ D Y A N G + + +++V K +A
Sbjct: 161 SSRVRIVDG----GNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 37.9 bits (88), Expect = 0.006
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPSPP 226
L + + D G Y A+N+ G S ++IV K +
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 57.9 bits (140), Expect = 1e-10
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
S P L+V + + W P + Y + + +
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
+ GL P Y V A + +
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMYS 92
Score = 54.0 bits (130), Expect = 3e-09
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P E+ + ++W P + + Y I E + +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRITYGETGGNSPVQEFTVPYSSSTA 62
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI 418
+ L G Y V A + G + I
Sbjct: 63 TISGLSPGVDYTITVYAWGEDSAGYMFMYSPISI 96
Score = 50.2 bits (120), Expect = 6e-08
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 14/93 (15%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
P LEV + W+ P + Y + Y G +P +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSS--SVYYYRIT-YGETGGNSPVQEFTVPYSSS- 60
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
++GL+PG +Y V A ++
Sbjct: 61 --TATISGLSPGVDYTITVYAWGEDSAGYMFMY 91
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 58.2 bits (141), Expect = 1e-10
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
P P L+ N+ L WK P + P++ Y + ET G
Sbjct: 7 GPDGPTQ-LRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQ--AETPGSAV 59
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN 323
+ L+ + Y VR + + P + T + + P +
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRD 101
Score = 53.2 bits (128), Expect = 6e-09
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDV 114
P+GP L N+ + L W P++ P++ Y ++ P + +
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQAETPGSAVDYPL 63
Query: 115 TGLTPGHEYKFRVKALNKEGESEPLET 141
L Y V+ L + P
Sbjct: 64 HDLVLHTNYTATVRGLRGPNLTSPASI 90
Score = 48.2 bits (115), Expect = 5e-07
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P + F L W PP+ +P+ Y I+ +P + A+T G
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQ--AETPGSAVDY 61
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 426
+ DL+ Y V + P+ AP AK+V+P
Sbjct: 62 PLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTP 109
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 58.2 bits (141), Expect = 1e-10
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 220 LDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
LD+ P P + + + W P++ + Y + + T + +
Sbjct: 22 LDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTI--KVDY 78
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+E L P+ Y ++A N G+ PL +A
Sbjct: 79 KQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115
Score = 55.9 bits (135), Expect = 1e-09
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 4/109 (3%)
Query: 307 SEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEK 366
++ L+ + P P + ++ T + ++WTPPE + GY I
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHVRPLVTS-IVVSWTPPENQNI-VVRGYAIGYGIG 67
Query: 367 YSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 415
+ + + + +L + Y + A N G G P +A
Sbjct: 68 SP--HAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESA 114
Score = 54.8 bits (132), Expect = 3e-09
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
+ W P++ + GY + ++ + L P Y +KA N
Sbjct: 44 VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFN 102
Query: 132 KEGESEPLET 141
GE PL
Sbjct: 103 NVGEGIPLYE 112
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ W PPE+ + Y + + + + TI+N+D + I
Sbjct: 44 VVSWTPPENQNI-VVRGYAIG-YGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVIT---- 97
Query: 580 SDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAP 611
+ A N+ G+ ++ V S P
Sbjct: 98 -------LKAFNNVGEGIPLYESAVTRPHTSGP 123
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 60.6 bits (147), Expect = 2e-10
Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 44/223 (19%)
Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----KDRFK 474
R + P I + SD+ V G + G P PT EW + + +
Sbjct: 4 RQEDFPPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 475 IVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGG 531
++ ++ R D G+Y +N G A + V +
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL-----RDD---- 113
Query: 532 APIEYYMVEKMETDTGKVL-------------IKW------IRTNDKRVTIDNVDYFTKI 572
+ M + I W + D+R+TI K+
Sbjct: 114 --FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG----GKL 167
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGP 614
I ++SD +Y TN G+ + E+ V ++PS +
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
Score = 41.3 bits (97), Expect = 4e-04
Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 52/190 (27%)
Query: 551 IKWIRTNDKRVTIDNVD-------------YFTKITIRPLQRSDTAQYTVTATNSQGK-- 595
I+W + +RV D D +F +I R D Y A N G+
Sbjct: 41 IEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
Query: 596 DQVFIEVVVTDKPSAPEGPIQWLLTLTD----------------VTWEISNYLQELHSSL 639
V + + P ++ + + ++W+
Sbjct: 100 SHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDG--------- 150
Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 698
P+ D+R+TI K+ I ++SD +Y TN G+ + E+ V
Sbjct: 151 SPLDD------KDERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Query: 699 TDKPSAPEGP 708
++PS +
Sbjct: 201 LERPSFVKAA 210
Score = 36.7 bits (85), Expect = 0.013
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPS 224
L + +++DAG Y N+ G+ S E+ VL++PS
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 60.1 bits (145), Expect = 2e-10
Identities = 30/196 (15%), Positives = 52/196 (26%), Gaps = 28/196 (14%)
Query: 234 NVHAEGV----TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLI 289
NV V L W+ P GQ + + + T T + L
Sbjct: 7 NVRMNSVNFKNILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQTTL---TECDFSSLS 61
Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPE 349
+ RVRA S+ + T S PG D + + + P+
Sbjct: 62 KYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVL-----ADCLHMRFLAPK 116
Query: 350 QNGGS---------PIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
Y ++ ++ + + + +L Y +V
Sbjct: 117 IENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ---ITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 401 AVNK--GGPGEPSDPT 414
GE S+P
Sbjct: 174 GFLPDRNKAGEWSEPV 189
Score = 44.0 bits (103), Expect = 5e-05
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
L+W P G+ + + Y +T E D + L+ ++ RV+A
Sbjct: 18 ILQWESPAFAKGQL--TFTAQ-YLSYRIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEF 74
Query: 132 KEGESEPLET 141
+ S+ ++
Sbjct: 75 ADEHSDWVQI 84
Score = 41.3 bits (96), Expect = 4e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 327 KPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKV 386
P + + + L W P G + + + Y +KC QT +
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQ--LTFTAQYLS-YRIFQDKCMQT--TLTECDF 57
Query: 387 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD 435
L + + RV A + T + P + + L+D
Sbjct: 58 SSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106
Score = 30.1 bits (67), Expect = 1.6
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 17/120 (14%)
Query: 521 LKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIR----- 575
L+W P G + + + + K ++T ++ + T+R
Sbjct: 19 LQWESPAFAKG--QLTFTAQYLSYRIFQD--KCMQTTLTECDFSSLSKYGDHTLRVRAEF 74
Query: 576 PLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK--------PSAPEGPIQWLLTLTDVTWE 627
+ SD Q T + + ++V V P W + +W
Sbjct: 75 ADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKNVYNSWT 134
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.2 bits (136), Expect = 4e-10
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L ++V G F+I + EP +W + + +I+ D K L + + +
Sbjct: 11 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL 69
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
G +G + N K A + V
Sbjct: 70 GMTGEVSFQAAN----TKSAANLKV 90
Score = 31.1 bits (71), Expect = 0.21
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 548 KVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
V +W I + + Q T + + A N++ + ++
Sbjct: 33 DVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANLKVK 91
Score = 30.0 bits (68), Expect = 0.72
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
L I + + Q T + + A N++ + ++
Sbjct: 45 LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANLKVK 91
Score = 26.9 bits (60), Expect = 7.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVE 216
L + Q G + A N +++V+
Sbjct: 61 ILILHNCQLGMTGEVSFQAANTKSAANLKVK 91
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 56.2 bits (136), Expect = 5e-10
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 5/97 (5%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
S P L+V + + W + Y + + G +
Sbjct: 5 SSVPTK-LEVVAATPTSLLISWDASSS----SVSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAK 319
+ GL P Y V A + +SI +
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 46.2 bits (110), Expect = 1e-06
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
P LEV + W+ + Y + Y G +P +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASSS----SVSYYRIT-YGETGGNSPVQEFTVPGSSS- 58
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIAR 148
++GL+PG +Y V A + + SSI R
Sbjct: 59 --TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 45.5 bits (108), Expect = 2e-06
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 4/75 (5%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
+ ++W S + Y I E + G + + L G Y V
Sbjct: 21 LLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVY 76
Query: 401 AVNKGGPGEPSDPTA 415
A S +
Sbjct: 77 AYYSYYDLYYSYSPS 91
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 60.7 bits (146), Expect = 5e-10
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 15/199 (7%)
Query: 222 KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT 281
+ PP L VS + V W P+ Y D+ + P
Sbjct: 2 ETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRS---- 57
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFV 341
L + + + + + I + + + + ++
Sbjct: 58 --IEVPLNERICLQVGSQCSTNESEKPSILVEKCI-SPPEGDPESAVTELQCIWHNLSYM 114
Query: 342 ELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGD-TPKGKVLDLIEGN-----QY 395
+ +W P SP Y + + +C + G DL + Q+
Sbjct: 115 KCSWLPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQH 172
Query: 396 EFRVLAVNKGGPGEPSDPT 414
+++ + G +PS
Sbjct: 173 SVQIMVKDNAGKIKPSFNI 191
Score = 53.0 bits (126), Expect = 1e-07
Identities = 42/296 (14%), Positives = 75/296 (25%), Gaps = 67/296 (22%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
P L VS + WN P+ Y D + P +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSI----EVP 61
Query: 117 LTPGHEYKFRVKALNKEGE--SEPLETFSSIIARDP------------------------ 150
L + + E E S +E S DP
Sbjct: 62 LNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG 121
Query: 151 --------YSKYTSVSSLD------SHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRAD 196
Y+ Y SL+ + R Q G + V+
Sbjct: 122 RNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQ------ 175
Query: 197 AGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS-NVHAEGVTLDWKVPDDDGGQPI 255
+ ++ GK ++ L P P + + H + + + W+ P + + +
Sbjct: 176 -----IMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCL 230
Query: 256 E-----------KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
+ V + EA + V G++P+ R+R
Sbjct: 231 FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 40.3 bits (93), Expect = 0.002
Identities = 31/224 (13%), Positives = 59/224 (26%), Gaps = 32/224 (14%)
Query: 199 FYTVTAENINGKDSVEVEVIVLDKPSPPGGP---LKVSNVHAEGVTLDWKVPDDDGGQPI 255
+ + N + K S+ VE + P L+ + + W + P
Sbjct: 70 VGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN--TSPD 127
Query: 256 EKYVVDKMDEATGRWTP------AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
Y + + + G+ G L ++ ++ + GK +P
Sbjct: 128 TNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKP 187
Query: 310 LTTTASIEAKNPFNQPGKPGTPEIK--DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKY 367
P KP P IK F D + + W P+ + Y +E
Sbjct: 188 SFNIV------PLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLF-YEVEVNNSQ 240
Query: 368 SPIWEKCAQTEGDTPKG------------KVLDLIEGNQYEFRV 399
+ E V ++ R+
Sbjct: 241 TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 34.9 bits (79), Expect = 0.077
Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 24/207 (11%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
WNPPE +Y + K I +R ++ + +
Sbjct: 20 VIWTWNPPEGASSNCSLWYFSHFGDKQD-----KKIAPETRRSIEVPLNERICLQVG--- 71
Query: 579 RSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ----WLLTLTDVT--WEISNYL 632
+ +TN K + +E ++ PE + L+ + W
Sbjct: 72 -------SQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT 124
Query: 633 QE---LHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
SLE + + +T + + ++ GK
Sbjct: 125 SPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGK 184
Query: 690 DQVFIEVVVTDKPSAPEGPIQIWMSLV 716
+ +V P+ P +S
Sbjct: 185 IKPSFNIVPLTSRVKPDPPHIKNLSFH 211
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 5e-10
Identities = 71/486 (14%), Positives = 135/486 (27%), Gaps = 145/486 (29%)
Query: 242 LDWKVPDDDGGQPIEKYVVDKM------DEATGR--WTPAGETEGPVTGLEVEGLIPNHK 293
D K D + K +D + T R WT + E V E L N
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-- 90
Query: 294 YKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGG 353
YKF + + + + + T IE ++ N
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRL---------------------------YNDN 123
Query: 354 SPIVGYIIEKKEKYSPIWEKCAQT---------EGDTPKGK-VL------DLIEGNQYEF 397
Y + + + Y + + +G GK + + +F
Sbjct: 124 QVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 398 RVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT 457
++ +N P ++ P N SD SN + I+ I
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDH----SSNIKLRIHSI------ 230
Query: 458 KEWLCNDITIISKDRFK---IVNDDKSTK--LKVFDSK-------RGDSGI--------- 496
+ L ++ ++ +V + F+ R +
Sbjct: 231 QAELRR---LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATT 286
Query: 497 -YTLAVKNSWGTDKGTAK---VTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIK 552
+ +S K + L C + P E P ++ + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRD 339
Query: 553 WIRTND--KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+ T D K V D + + ++ L+ ++ + F + V
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-------------FDRLSVF----- 381
Query: 611 PEG---PIQWLLTLTDVTW------EISNYLQELHS-SL-------MPISLESQYLMNDK 653
P P L + W ++ + +LH SL IS+ S YL +
Sbjct: 382 PPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--EL 435
Query: 654 RVTIDN 659
+V ++N
Sbjct: 436 KVKLEN 441
Score = 56.4 bits (135), Expect = 3e-08
Identities = 94/655 (14%), Positives = 178/655 (27%), Gaps = 190/655 (29%)
Query: 90 LVEKYDPETGV----WIPVGKTRE--PEMDVTGLTPGHEYKFRVKALNKEGESEPLETFS 143
++ D +G W + K E + L YKF + + E + T
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRM 111
Query: 144 SIIARD-------PYSKYTSVSSLDSHKRSNQPCGSGMVRK-VQHLDYNTKLGVR-MAQR 194
I RD ++KY +VS L + + +R+ + L + + +
Sbjct: 112 YIEQRDRLYNDNQVFAKY-NVSRLQPYLK---------LRQALLELRPAKNVLIDGV--- 158
Query: 195 ADAGFYTVTAENINGKDSVEVEVIVLDKP---SPPGGP--LKVSNVHAEGVTLDWKVPDD 249
G GK V ++V L L + N ++ L
Sbjct: 159 --LGS---------GKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVL------- 199
Query: 250 DGGQPIEK--YVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFR---------- 297
+ ++K Y +D + + + E+ L+ + Y+
Sbjct: 200 ---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQN 255
Query: 298 ---VRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE------LA-WT- 346
A N K L TT + + F + L +
Sbjct: 256 AKAWNAFNLSCKI--LLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 347 ------PPEQNGGSPIVGYII-EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
P E +P II E W+ D K+ +IE
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIE-------- 360
Query: 400 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 459
++N + P R + V F + IPT
Sbjct: 361 SSLN-------------------VLEPAEYRKMFDRLSV-----FPPSAH-----IPTIL 391
Query: 460 ----WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA--- 512
W +I D +VN L K I ++ ++ + A
Sbjct: 392 LSLIWF----DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 513 ----KVTVLGCSLKWN--PPEDDG------GAPIEYYMVEKMETDTGKVLIKWIRTNDKR 560
+ + PP D G +++ + +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEHPERMTLFRMVF------ 497
Query: 561 VTIDNVDY-FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLL 619
+D+ F + IR TA + + + F + + D E + +
Sbjct: 498 -----LDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVN 546
Query: 620 TLTDVTWEIS-NYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQR 673
+ D +I N + ++ L+ I+ LM + + + + +QR
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIA-----LMAED-------EAIFEEAHKQVQR 589
Score = 42.1 bits (98), Expect = 7e-04
Identities = 60/402 (14%), Positives = 125/402 (31%), Gaps = 113/402 (28%)
Query: 333 IKDFDT----DFVELAWTPPEQNGGSPIVGYIIEKKEK----YSPIWEKCAQTEGDTPKG 384
+ +FD D + + E + +II K+ W ++ E + +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEE-------IDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQK 81
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-------VSPY-INRDQLSDI 436
V +++ N Y+F + + K +PS T +I + + + Y ++R Q
Sbjct: 82 FVEEVLRIN-YKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL- 138
Query: 437 KVRAG-SNFEFDINVI-------GEPIPTKEWL----CNDITIISKDRFKIVNDDKSTKL 484
K+R NV+ G K W+ C + + +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLSYKV--QCKM----------- 180
Query: 485 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWN-PPEDDGGAPIEYYMVEKME 543
D I+ L +KN + + L + N D + I+ +
Sbjct: 181 --------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--I 230
Query: 544 TDTGKVLIKWIRTNDKRVTIDNV------DYF-----TKITIRPLQRSDTAQYTVTA--- 589
+ L+K + + + NV + F +T R Q +D T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 590 --------TNSQGKDQVFIEVVVTDKPSAPE-----GP-----IQWLLTLTDVTWEISNY 631
T + K + ++ + P P I + TW+ N+
Sbjct: 291 LDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD--NW 347
Query: 632 LQ---ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP 670
+ ++++ SL ++ F ++++ P
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK-------MFDRLSVFP 382
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 55.9 bits (135), Expect = 6e-10
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ + P W + + + + D + +L + ++K
Sbjct: 16 DKVSLTFTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
DSG + VTV
Sbjct: 75 QDSGEFECRT----EGVSAFFGVTV 95
Score = 35.1 bits (81), Expect = 0.011
Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 9/76 (11%)
Query: 543 ETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
E W + + + + ++ + + D+ ++
Sbjct: 33 ELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG----VS 88
Query: 598 VFIEVVVTDKPSAPEG 613
F V V D G
Sbjct: 89 AFFGVTVQDPSGPSSG 104
Score = 33.9 bits (78), Expect = 0.034
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
V+ +L + A+ D+G + E S V V D P G
Sbjct: 57 VVKMDGRKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSSG 104
Score = 33.5 bits (77), Expect = 0.041
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
+ + + + ++ + + D+ ++ F V V D G
Sbjct: 50 VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSSG 104
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 55.9 bits (135), Expect = 6e-10
Identities = 12/86 (13%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
+++ AG++ V + W + + S + ++ + +L V + +
Sbjct: 18 HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQA 76
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
++G Y+ G + + ++ V G
Sbjct: 77 EAGEYSCEA----GGQQLSFRLQVAG 98
Score = 32.8 bits (75), Expect = 0.082
Identities = 8/65 (12%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+ W + ++ +V ++ V ++ ++ +++ +Y+ A G Q+ + V
Sbjct: 42 VTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVA 97
Query: 606 DKPSA 610
+
Sbjct: 98 GQCFG 102
Score = 32.0 bits (73), Expect = 0.17
Identities = 8/56 (14%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
L + +V ++ V ++ ++ +++ +Y+ A G Q+ + V +
Sbjct: 51 LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCFG 102
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 58.4 bits (141), Expect = 7e-10
Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 28/201 (13%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKS 481
+ P+ ++ +++V+ G + + WL N+ + + +
Sbjct: 7 LDPFP-PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEK 541
L + + + D G Y+ V + T +K L + +
Sbjct: 66 GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL---IPIPERTTKPYPADIVVQFKD 122
Query: 542 METDTGKVL-------------IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTA 583
+ G+ + I+W + + ++ + I +Q D
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEG 178
Query: 584 QYTVTATNSQGKDQVFIEVVV 604
Y A N +GKD+ + V
Sbjct: 179 IYECEAENIRGKDKHQARIYV 199
Score = 52.2 bits (125), Expect = 8e-08
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
Q D+ G N + +G P+P W + S LK+F+ +
Sbjct: 119 QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG----AVLKIFNIQL 174
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
D GIY +N G DK A++ V
Sbjct: 175 EDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 44.5 bits (105), Expect = 3e-05
Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 50/178 (28%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKIT-----IRPLQRSDTAQYTVTATNSQGKDQV---FIEV 602
+W+ + F T I ++ SD Y+ ++ V FI +
Sbjct: 42 YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL 101
Query: 603 VVTDKPSAPEGPIQWLLTLTD----------------------VTWEISNYLQELHSSLM 640
+ + + P ++ D + W
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVL---------E 152
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
P+ ++ + + I N+ Q D Y A N +GKD+ + V
Sbjct: 153 PMPSTAEISTSGAVLKIFNI-----------QLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 37.2 bits (86), Expect = 0.009
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
M + L + Q D G Y AENI GKD + + V
Sbjct: 151 LEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 31.0 bits (70), Expect = 0.88
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 164 KRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVL--- 220
+ P M ++ N L + + +D G Y+ + + SV + I L
Sbjct: 45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPI 104
Query: 221 ----DKPSPPGGPLKVSNVHA 237
KP P ++ +V+A
Sbjct: 105 PERTTKPYPADIVVQFKDVYA 125
Score = 27.9 bits (62), Expect = 8.4
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 668 IRPLQRSDTAQYTVTATNSQGKDQVFIE-VVVTDKPSAPEGP 708
I ++ SD Y+ ++ VF + + + P P
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP 111
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 57.9 bits (140), Expect = 8e-10
Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 28/178 (15%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKR 491
+ V G + + +V G P +W+ + + + D+ I ++ L + +R
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69
Query: 492 GDSGIYTLAVKNSWGTDK-GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK-- 548
D+G Y V++ T+ +TV G P+D + +
Sbjct: 70 SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD----------LAVPPNAPFQLS 119
Query: 549 ---------VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
V I W R ++ + + + ++ A N +G
Sbjct: 120 CEAVGPPEPVTIVWWR-GTTKIGGPAPSP---SVLNVTGVTQSTMFSCEAHNLKGLAS 173
Score = 44.4 bits (105), Expect = 3e-05
Identities = 16/152 (10%), Positives = 50/152 (32%), Gaps = 23/152 (15%)
Query: 551 IKWIR-------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEV 602
I+W++ + + + + ++++ ++RSD +Y + + + +
Sbjct: 34 IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93
Query: 603 VVTDKPSAPEGPIQWLLTLTDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDN 659
V EG + + D+ + Q E P+++ + ++
Sbjct: 94 TV-------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI--VWWRGTTKIGGPA 144
Query: 660 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691
+ + + ++ A N +G
Sbjct: 145 PSP---SVLNVTGVTQSTMFSCEAHNLKGLAS 173
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 481
+ P+ + D+ V + F+ +G P P W I V
Sbjct: 96 EGVPFF-TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV----- 149
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV 516
+ + S +++ N G TA V +
Sbjct: 150 ----LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Score = 32.8 bits (75), Expect = 0.18
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 171 GSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD-SVEVEVIVLDKPS 224
+ V + L ++ +R+DAG Y E+ + S V + V P
Sbjct: 46 LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPF 100
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 58.2 bits (140), Expect = 9e-10
Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 10/198 (5%)
Query: 225 PPGGPLKVS--NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVT- 281
PPG P + + E T W+ D G + E P T GP +
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 282 GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK-PGTPEIKDFDTDF 340
+ Y V A N+ G S + + P + + + +
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPY 122
Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
+ + W+PP + G + Y I K + + WE G + K+L L G +Y
Sbjct: 123 LWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE--IHFAGQQTEFKILSLHPGQKYLV 180
Query: 398 RVLAVNKGGP-GEPSDPT 414
+V G S T
Sbjct: 181 QVRCKPDHGYWSAWSPAT 198
Score = 47.4 bits (112), Expect = 4e-06
Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 15/126 (11%)
Query: 201 TVTAENINGK---DSVEVEVIVLDKPSPPGGP---LKVSNVHAEGVTLDWKVP---DDDG 251
V A N G D + V+V + +P PP +K + + W P D
Sbjct: 78 MVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKT 137
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK----S 307
G Y + E W G T ++ L P KY +VR G S
Sbjct: 138 GWFTLLYEIRLKPEKAAEWEI--HFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWS 195
Query: 308 EPLTTT 313
Sbjct: 196 PATFIQ 201
Score = 40.1 bits (93), Expect = 0.001
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 61 LEVSNIHKDGCTLKWNKP----KDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTG 116
++ K +KW+ P G L Y + + W ++ E +
Sbjct: 113 VKQPEDRKPYLWIKWSPPTLIDLKTGWFTLL-YEIRLKPEKAAEWEIHFAGQQTEFKILS 171
Query: 117 LTPGHEYKFRVKALNKEGE----SEPLE 140
L PG +Y +V+ G S
Sbjct: 172 LHPGQKYLVQVRCKPDHGYWSAWSPATF 199
Score = 35.8 bits (82), Expect = 0.030
Identities = 34/173 (19%), Positives = 53/173 (30%), Gaps = 24/173 (13%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
C W P DGG P Y + E +T D N +F K +
Sbjct: 22 CW--WRPG-TDGGLPTNYSLTYHREGET-----LMHECPDYITGGPNSCHFGK---QYTS 70
Query: 579 RSDTAQYTVTATNSQGK---DQVFIEVVVTDKPSAPEGPIQWLLTLTD------VTWEIS 629
T V ATN G D+++++V +P P + D + W
Sbjct: 71 MWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPP 130
Query: 630 NYLQELHSSLMPISLESQY-LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTV 681
+ +L + + E + I T+ I L +Y V
Sbjct: 131 TLI-DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPG--QKYLV 180
Score = 35.1 bits (80), Expect = 0.049
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 5/101 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
PGKP + + + + W P G Y + + + +C P
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLP--TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 385 ---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 422
Y V A N+ G + +
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQ 102
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 58.2 bits (140), Expect = 9e-10
Identities = 28/194 (14%), Positives = 46/194 (23%), Gaps = 22/194 (11%)
Query: 233 SNVHAE----GVTLDWKVPDDDGGQ---PIEKYVVDKMDEATGRWTPAGETEGPVTGLE- 284
+ L W G +E + + W P+ G E
Sbjct: 11 QQLSVLSTNMKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSL-TEGPEC 69
Query: 285 --VEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
+ + Y RVRA S K+PFN+ T + D
Sbjct: 70 DVTDDITATVPYNLRVRATLGSQTSAWSIL------KHPFNRQSTILTRPGMEITKDGFH 123
Query: 343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 402
L + P +++ + E + + G Y +
Sbjct: 124 LVIELEDL---GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTF 180
Query: 403 NK--GGPGEPSDPT 414
K G S
Sbjct: 181 VKAIGRYSAFSQTE 194
Score = 42.4 bits (99), Expect = 2e-04
Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 11/123 (8%)
Query: 202 VTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
V A + ++ + + P + +G L ++ D P +++V
Sbjct: 85 VRATLGSQTSAWSILKHPFNRQSTILTRP--GMEITKDGFHLVIELED---LGPQFEFLV 139
Query: 261 DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAV----NKQGK-SEPLTTTAS 315
G + +E + P Y + + + S+
Sbjct: 140 AYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQ 199
Query: 316 IEA 318
EA
Sbjct: 200 GEA 202
Score = 40.4 bits (94), Expect = 0.001
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE-----KYDPETGVWIPVGK---TREPEMDVT-GLTPGHE 122
L W+ G Y VE + + +WIP T PE DVT +T
Sbjct: 23 LLMWSPVIAPGETV--YYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVP 80
Query: 123 YKFRVKALNKEGESEPLETFS 143
Y RV+A S
Sbjct: 81 YNLRVRATLGSQTSAWSILKH 101
Score = 33.1 bits (75), Expect = 0.19
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIW--------EKCAQTEGDTPKGKVLDLIEGNQ 394
L W+P G V Y +E + +Y ++ C+ TE D+
Sbjct: 24 LMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTE-GPECDVTDDITATVP 80
Query: 395 YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 426
Y RV A S P ++ ++
Sbjct: 81 YNLRVRATLGSQTSAWSILKHPFNRQSTILTR 112
Score = 30.4 bits (68), Expect = 1.4
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 63 VSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHE 122
I KDG L +D G + + +P + + ++ + + + PG
Sbjct: 114 GMEITKDGFHLVIE-LEDLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAA 172
Query: 123 YKFRVKAL----NKEGE-SEP 138
Y + + + S+
Sbjct: 173 YCVKAQTFVKAIGRYSAFSQT 193
Score = 28.1 bits (62), Expect = 7.8
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 513 KVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFT 570
++T G L D G E+ + + +K +R+ V ++ ++
Sbjct: 116 EITKDGFHLVIELE--DLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGA 171
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 55.1 bits (133), Expect = 1e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 13/111 (11%)
Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 467
G P I ++ + G+P+P WL T
Sbjct: 1 GSSGSSGPPII-----------LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 49
Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
+D + + + L++ + + D+G YT +S G +A + V
Sbjct: 50 PGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 38.5 bits (90), Expect = 6e-04
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 551 IKWIR------TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
I W++ D R TI I+ L+ SDT YT AT+S G+ + V
Sbjct: 40 ISWLKEGFTFPGRDPRATIQEQGTLQ---IKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
Query: 605 TD 606
T+
Sbjct: 97 TE 98
Score = 36.6 bits (85), Expect = 0.003
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
L ++ + +D G YT A + +G+ S + V +
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
I+ L+ SDT YT AT+S G+ + VT+
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 60.8 bits (146), Expect = 1e-09
Identities = 50/485 (10%), Positives = 116/485 (23%), Gaps = 60/485 (12%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKV 246
+ + + D+G Y + S +V + V P + VT++
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPF 136
Query: 247 PDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG----------------LEVEGLIP 290
K + ++ + P + + L
Sbjct: 137 KT--ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 291 NHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQ 350
+ ++ +A + ++ ++ + G+ V +
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCR 254
Query: 351 NGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGG 406
++ K +P +E G +I G + E + A + G
Sbjct: 255 QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQ 314
Query: 407 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 466
E S + + +K AGS+ + + ++ C
Sbjct: 315 LQEGS---PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG 371
Query: 467 IISKDRFKIVNDDKSTKLK------VFDSKRG-------------DSGIYTLAVKNSWGT 507
+ +V+ + K + + + D+G Y
Sbjct: 372 AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
Query: 508 DKGTAKVTVLGCSLKW---NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIR--------- 555
+ G N G + K KW
Sbjct: 432 RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQ 491
Query: 556 --TNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKPSAP 611
K + + +T+ + R+D Y + + V V ++ +A
Sbjct: 492 DEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG 551
Query: 612 EGPIQ 616
+
Sbjct: 552 SRDVS 556
Score = 58.1 bits (139), Expect = 6e-09
Identities = 30/318 (9%), Positives = 80/318 (25%), Gaps = 43/318 (13%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIVNDDK--STKLKVFDSKRG 492
+ + +F + R + DK S + + ++
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKE 300
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD------------------GGAP- 533
D+G Y + +G+ + +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360
Query: 534 --IEYYMVEKMETDTGKVLIKWIRTNDK-----RVTI--DNVDYFTKITIRPLQRSDTAQ 584
I+Y+ + + + L+ K R+++ + + + + L D
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420
Query: 585 YTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMP--- 641
Y ++ +P+ + + + + S
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCH-FPCKFSSYEKYWCK 479
Query: 642 ------ISLESQYLMNDKRVTIDNVDYFT-KITIRPLQRSDTAQYTVTATNSQGKDQVF- 693
+L SQ K + + +T+ + R+D Y +
Sbjct: 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAA 539
Query: 694 IEVVVTDKPSAPEGPIQI 711
+ V V ++ +A + +
Sbjct: 540 VYVAVEERKAAGSRDVSL 557
Score = 53.5 bits (127), Expect = 2e-07
Identities = 33/264 (12%), Positives = 81/264 (30%), Gaps = 35/264 (13%)
Query: 463 NDITIISKDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGC- 519
++ R + N ++ + + + DSG Y + + + V
Sbjct: 54 GYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGP 113
Query: 520 ---------------SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDK---RV 561
++ N P A + +++ V+ N R+
Sbjct: 114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRI 173
Query: 562 TI---DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE-GPIQW 617
+ + I L+ SD QY A + ++ ++ V ++
Sbjct: 174 RLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRG 233
Query: 618 LLTLT-DVTWEISNYLQELHS-------SLMPISLESQYLMNDKRVTI--DNVDYFTKIT 667
+T + E++N + L ++ +L + + R+ + + D +
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVV 293
Query: 668 IRPLQRSDTAQYTVTATNSQGKDQ 691
I L++ D +Y A + +
Sbjct: 294 ITGLRKEDAGRYLCGAHSDGQLQE 317
Score = 41.9 bits (97), Expect = 7e-04
Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 18/164 (10%)
Query: 560 RVTI--DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI-Q 616
R + + + I L + D+ +Y + + + V+ P
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVY 122
Query: 617 WLLTLTDVTWE---ISNYLQE---------LHSSLMPISLESQYLMNDKRVTI---DNVD 661
+ VT + Q+ L+ L+ S R+ +
Sbjct: 123 TVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ 182
Query: 662 YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
+ I L+ SD QY A + ++ ++ V
Sbjct: 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL 226
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 150 PYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRM--AQRADAGFYTVTAENI 207
Y KY + + V + + + + + RAD G+Y +
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531
Query: 208 NGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV 260
+ + V V V + G VS A+ + + D G + IE +
Sbjct: 532 HFYGETAAVYVAV--EERKAAGSRDVSLAKADAAPDEKVL--DSGFREIENKAI 581
Score = 31.1 bits (69), Expect = 1.5
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 162 SHKRSNQPCGSGMVRKVQHLDYNTKLGVRM--AQRADAGFYTVTAENINGKDSVEVEVIV 219
P +G +R V + + +DAG Y A + + + ++ V
Sbjct: 160 DSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV 219
Query: 220 LDKPSPP 226
L
Sbjct: 220 LKPEPEL 226
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 54.8 bits (132), Expect = 2e-09
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDT 381
P + + L W N +PI G+ I + S K EGD
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ L Y+ ++ N+GG E S+
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101
Score = 46.7 bits (111), Expect = 1e-06
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 225 PPGGP--LKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVV---DKMDEATGRWTPAGETEG 278
P GP V+ + L W +P + PI + + + + EG
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-MVEG 66
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ L P Y +++ N+ G+SE
Sbjct: 67 DRYWHSISHLQPETSYDIKMQCFNEGGESEF 97
Score = 42.1 bits (99), Expect = 6e-05
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 72 TLKWNK-PKDDGGEPLEGYLV---EKYDPETGVWIPVG-KTREPEMDVTGLTPGHEYKFR 126
LKW P + P+ G+ + + + ++ L P Y +
Sbjct: 26 MLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIK 85
Query: 127 VKALNKEGESEPLETFSSII 146
++ N+ GESE FS+++
Sbjct: 86 MQCFNEGGESE----FSNVM 101
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 56.9 bits (137), Expect = 2e-09
Identities = 31/195 (15%), Positives = 51/195 (26%), Gaps = 23/195 (11%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--------LK 485
++++ + + G P EW + + +
Sbjct: 12 PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71
Query: 486 VFDSKRGDSGIYTLAVKNSWGTDKGTA--KVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
R D+G YT V G G K+ VL K ++ E
Sbjct: 72 FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE 131
Query: 544 TD-TGKVLIKWIR-------TNDKRVTIDNVDYFT-----KITIRPLQRSDTAQYTVTAT 590
D + W + N Y ++ PL SDT +Y+ A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Query: 591 NSQGKDQVFIEVVVT 605
N G V +
Sbjct: 192 NGYGTPMTSNAVRME 206
Score = 55.4 bits (133), Expect = 9e-09
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 558 DKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ--VFIEVVVTDKPSAPEGPI 615
+ RVT T IT + + R DT YT + G V ++++V PS P I
Sbjct: 60 EDRVTFLP----TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI 115
Query: 616 QWLLTL-TDVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKI 666
T+ S Y +MP + +S ++ ++ ++
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT--GEL 173
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
PL SDT +Y+ A N G V +
Sbjct: 174 VFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 45.7 bits (108), Expect = 1e-05
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI------- 475
V P G+ G P W + I + + +
Sbjct: 106 VPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164
Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
V + + +L D+G Y+ +N +GT + V +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 34.9 bits (80), Expect = 0.053
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLDKPSPPGGPLKVS 233
+ + T + + R D G YT G V+V++IVL PS P + S
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSS 118
Query: 234 NVHAEGVTL 242
L
Sbjct: 119 ATIGNRAVL 127
Score = 32.6 bits (74), Expect = 0.26
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLD 221
+L +D G Y+ A N G S V + ++
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 54.3 bits (131), Expect = 2e-09
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L + G+ + + EW T+ R+ + D +L++ D
Sbjct: 14 DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLG 518
D+G Y+ G ++ +A +TV
Sbjct: 72 ADAGEYSCMC----GQERTSATLTVRA 94
Score = 31.6 bits (72), Expect = 0.25
Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 546 TGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
+ ++W + + R ++ ++ I L +D +Y+ + + +
Sbjct: 33 SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATLTV 92
Query: 601 EVVVTD--KPSAPE 612
+ + S P
Sbjct: 93 RALPARFTEGSGPS 106
Score = 30.4 bits (69), Expect = 0.52
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD--KPSAPE 706
L + R ++ ++ I L +D +Y+ + + + + + S P
Sbjct: 47 LRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGSGPS 106
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+L + ADAG Y+ G++ + V P
Sbjct: 63 ELQIHDLSVADAGEYSCMC----GQERTSATLTVRALP 96
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 54.3 bits (131), Expect = 3e-09
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
L + + G+ + W T+ DR + D +L++
Sbjct: 25 GLRNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVA 82
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D+G Y G ++ +A +TV
Sbjct: 83 EDAGEYLCMC----GKERTSAMLTV 103
Score = 38.1 bits (89), Expect = 0.001
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 546 TGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
+ ++W + + R ++ ++ IR L D +Y GK++
Sbjct: 44 SKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSA 99
Query: 601 EVVVTDKPSAPE 612
+ V PS P
Sbjct: 100 MLTVRAMPSGPS 111
Score = 35.4 bits (82), Expect = 0.011
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
L + R ++ ++ IR L D +Y GK++ + V PS P
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111
Score = 33.5 bits (77), Expect = 0.055
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+L +R DAG Y GK+ + V PS P
Sbjct: 74 ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP 110
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 53.9 bits (130), Expect = 3e-09
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDS 489
QL D G E + V E +W N I K R++I + K L + +
Sbjct: 13 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 71
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ D+ Y++ + +AK++V
Sbjct: 72 TKADAAEYSVMT----TGGQSSAKLSV 94
Score = 31.9 bits (73), Expect = 0.18
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 551 IKW-------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVV 603
+KW I R I + I ++D A+Y+V T Q ++ ++
Sbjct: 38 VKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD-- 95
Query: 604 VTDKPSA 610
+ PS+
Sbjct: 96 LKSGPSS 102
Score = 31.1 bits (71), Expect = 0.26
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
R I + I ++D A+Y+V T Q ++ ++ + PS+
Sbjct: 51 PKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVD--LKSGPSS 102
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGG 228
L + A +ADA Y+V ++ V K P G
Sbjct: 65 ILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKSGPSSG 103
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 56.7 bits (136), Expect = 3e-09
Identities = 30/208 (14%), Positives = 50/208 (24%), Gaps = 28/208 (13%)
Query: 223 PSPPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA----G 274
PSPP +V E L W Y V + W
Sbjct: 6 PSPP-------SVWFEAEFFHHILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQ 56
Query: 275 ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK 334
+T L ++ Y+ RVRAV+ S+ T
Sbjct: 57 TLSYDLT-AVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEV--TLTVGSVNLEI 113
Query: 335 DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK------CAQTEGDTPKGKVLD 388
++ P+ I +Y K + + +L
Sbjct: 114 HNGFILGKIQLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLT 173
Query: 389 LIEGNQYEFRVLAV--NKGGPGEPSDPT 414
E ++ +V ++ G S
Sbjct: 174 SGEVGEFCVQVKPSVASRSNKGMWSKEE 201
Score = 42.0 bits (98), Expect = 2e-04
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK-TREPEMDVTGLT----PGHEYKFR 126
L W Y V W + + ++ D+T +T + Y+ R
Sbjct: 21 ILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRAR 78
Query: 127 VKALNKEGESEPLETFSSIIARDPY 151
V+A++ S+ T + +
Sbjct: 79 VRAVDGSRHSQWTVTNTRFSVDEVT 103
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ ++V AGS F+ + + W I + +++ + + L V +
Sbjct: 14 KPRSVEVAAGSPAVFEAETERAGVKVR-WQRGGSDISASNKYGLATEGTRHTLTVREVGP 72
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D G Y + G+ K + V
Sbjct: 73 ADQGSYAVIA----GSSKVKFDLKV 93
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 543 ETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
ET+ V ++W R + + + +T+R + +D Y V A G +
Sbjct: 31 ETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSK 86
Query: 598 VFIEVVVT 605
V ++ V
Sbjct: 87 VKFDLKVI 94
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
+ + + +T+R + +D Y V A G +V ++ V
Sbjct: 48 ISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 53.9 bits (130), Expect = 4e-09
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 341 VELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
+ + W PE+ G I GY + + + D+ + +L+ Y +V
Sbjct: 35 ILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKV 93
Query: 400 LAVNKGGPGEPSDP 413
LA G G S
Sbjct: 94 LAFTSIGDGPLSSD 107
Score = 45.1 bits (107), Expect = 6e-06
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 209 GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVV---DKMD 264
S V PS ++ + + + + WK P++ GQ I+ Y V
Sbjct: 3 SGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQ-IQGYRVYYTMDPT 61
Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
+ W + L+P Y +V A G S +
Sbjct: 62 QHVNNWMK--HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI 111
Score = 42.4 bits (100), Expect = 5e-05
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 72 TLKWNKPKDDGGEPLEGYLV---EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK 128
++W +P++ G+ ++GY V W+ + L P Y +V
Sbjct: 36 LVQWKEPEEPNGQ-IQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVL 94
Query: 129 ALNKEGE---SEPLE 140
A G+ S ++
Sbjct: 95 AFTSIGDGPLSSDIQ 109
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 53.3 bits (128), Expect = 5e-09
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 413 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 472
PT P P+ ++ + V G + + + + WL + + ++ +R
Sbjct: 1 PTLPEQ-----AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54
Query: 473 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+I + +++V DS DSG+Y + G+D V V
Sbjct: 55 TRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 37.5 bits (87), Expect = 0.002
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W+R R I ++ +R +D+ Y ++ G D + V V+
Sbjct: 40 INWLRDGVQLVESNRTRITG----EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 37.5 bits (87), Expect = 0.002
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
L+ R I ++ +R +D+ Y ++ G D + V V+
Sbjct: 49 LVESNRTRITG----EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 34.4 bits (79), Expect = 0.019
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
++ VR + AD+G Y + +G D+ V V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 52.8 bits (127), Expect = 8e-09
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
+V G F + + +P +W N I ++ + L + + + D
Sbjct: 16 PAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTD 74
Query: 494 SGIYTLAVKNSWGTDKGTAKVTV 516
Y + G +K + ++ V
Sbjct: 75 DSEYYVTA----GDEKCSTELFV 93
Score = 37.0 bits (86), Expect = 0.003
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+KW + + ++ + I Q +D ++Y VTA G ++ E+ V
Sbjct: 39 VKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVR 94
Query: 606 DKPSA 610
PS+
Sbjct: 95 SGPSS 99
Score = 35.4 bits (82), Expect = 0.010
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
+ + ++ + I Q +D ++Y VTA G ++ E+ V PS+
Sbjct: 48 IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPSS 99
Score = 30.0 bits (68), Expect = 0.64
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
L + Q D Y VTA G + E+ V PS
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 52.8 bits (127), Expect = 8e-09
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
+ + P W + ++ + +D +L + +
Sbjct: 20 KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLE 78
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTV 516
DSG Y + + + VTV
Sbjct: 79 DSGEYLCEI----DDESASFTVTV 98
Score = 34.0 bits (78), Expect = 0.038
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
++W + + + D ++ + +Q D+ +Y + V VT
Sbjct: 44 VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVT 99
Query: 606 DKP 608
+ P
Sbjct: 100 EPP 102
Score = 32.8 bits (75), Expect = 0.096
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 647 QYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ ++ + + D ++ + +Q D+ +Y + V VT+ P
Sbjct: 51 EEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP 102
Score = 29.7 bits (67), Expect = 1.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 186 KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+L + Q D+G Y +S V V + P
Sbjct: 69 RLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPP 102
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 53.1 bits (128), Expect = 9e-09
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 298 VRAVNKQGKSEPLTTTASIEAKNPFNQP-GKPGTPEIKDFDTDFVELAWTPP---EQNGG 353
+ N+ G T I + P P ++ ++ ++++W PP QNG
Sbjct: 4 GSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59
Query: 354 SPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
I GY I ++ + E + L +G+QY F+V A+ G G PS+
Sbjct: 60 -FITGYKIRHRKTTR--RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Query: 414 T 414
Sbjct: 117 Y 117
Score = 42.7 bits (101), Expect = 4e-05
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 13/122 (10%)
Query: 201 TVTAENINGK--DSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDG--GQP 254
+ ++ N G + ++ V+ L D PS PP + + V++ + + W P G
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQN-VSLEVVNSRSIKVSWLPPPSGTQNGF- 60
Query: 255 IEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLT 311
I Y + T R E GL +Y F+V A+ G S T
Sbjct: 61 ITGYKI--RHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT 118
Query: 312 TT 313
Sbjct: 119 AE 120
Score = 31.9 bits (73), Expect = 0.23
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 72 TLKWNKPKDDG--GEPLEGYLVE-KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK 128
+ W P G + GY + + G + + TGL G +Y F+V
Sbjct: 46 KVSWLPPPSGTQNGF-ITGYKIRHRKTTRRGEMETL-EPNNLWYLFTGLEKGSQYSFQVS 103
Query: 129 ALNKEGESEP 138
A+ G P
Sbjct: 104 AMTVNGTGPP 113
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 56.8 bits (136), Expect = 1e-08
Identities = 46/337 (13%), Positives = 88/337 (26%), Gaps = 74/337 (21%)
Query: 431 DQLSDIKVRAGSNF-----------EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
D + I+V +F+ + T W ++ +
Sbjct: 12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71
Query: 480 -----KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED------ 528
+ L + D+G YT ++N+ K + V+ +N P
Sbjct: 72 NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131
Query: 529 ---DGGAPIEYYMVEKMETDTGKVLIKWIR-----TNDKRVTIDNVDYFTKITIRPLQRS 580
G I V+ + K I W N V + ++ S
Sbjct: 132 YIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALIS 187
Query: 581 DTAQYTVTAT----NSQGKDQVFIEVVVTDKPSAPEGPIQWL--------------LTLT 622
+ YT T + V V P P+ L +
Sbjct: 188 NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIP 247
Query: 623 -------------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
+V W I I+++ + ++ ++I+
Sbjct: 248 CTVYFSFLMDSRNEVWWTIDG------KKPDDITIDVTINESISHSRTEDETRTQILSIK 301
Query: 670 PLQRSDTA-QYTVTATNSQGKDQVFIEVVVTDKPSAP 705
+ D Y A +++G+ +V K AP
Sbjct: 302 KVTSEDLKRSYVCHARSAKGEVAKAAKVKQ--KVPAP 336
Score = 50.6 bits (120), Expect = 8e-07
Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 23/209 (11%)
Query: 516 VLGCSLKWNPPEDDG---GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKI 572
+ C L + + + + + D R + R++ + +
Sbjct: 26 RIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK----DVL 81
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI-----QWLLTLTDVTWE 627
RP +DT YT N+ +V + V K S P+ + +
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141
Query: 628 ISNYLQELHSSLMPI---SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 684
N SS+ P + + N V + ++ S+ YT T
Sbjct: 142 CPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG----MNLSFLIALISNNGNYTCVVT 197
Query: 685 ----NSQGKDQVFIEVVVTDKPSAPEGPI 709
+ V V P P+
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPV 226
Score = 40.2 bits (93), Expect = 0.002
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
+ + + + R++ + + RP +DT YT N+ +V + V
Sbjct: 60 DLEEPINFRLPENRISKEK----DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ 115
Query: 701 KPSAPEGPIQIWMSLV 716
K S P+++ + +
Sbjct: 116 KDSCFNSPMKLPVHKL 131
Score = 37.5 bits (86), Expect = 0.013
Identities = 13/50 (26%), Positives = 17/50 (34%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV 232
L R D G YT N V + V+ K S P+K+
Sbjct: 77 EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126
Score = 31.4 bits (70), Expect = 0.97
Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 27/166 (16%)
Query: 180 HLDYNTKLGVRMAQRADAGFYT----VTAENINGKDSVEVEVIVLDKPS--------PPG 227
+ L +A ++ G YT + + V V+ P P
Sbjct: 172 VIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPN 231
Query: 228 GPLKVSNVHAEGVTLDWKVPDDDGGQPI--------EKYVVDKMDEAT---GRWTPAGET 276
+ E + + V K D + T E
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291
Query: 277 EGPVTGLEVEGLIPNH-KYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
E L ++ + K + A + +G+ A ++ K P
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEV---AKAAKVKQKVP 334
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 52.9 bits (127), Expect = 1e-08
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEK-CAQTEGDTPKGKVLDLIEGNQYE 396
V++ W P +Q+G +VGY I + + I ++ + + + ++ +
Sbjct: 36 VDIRWMKPPTKQQDG--ELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCT 93
Query: 397 FRVLAVNKGGPGEPSDPT 414
R+ AV +GG G SDP
Sbjct: 94 VRIAAVTRGGVGPFSDPV 111
Score = 39.0 bits (91), Expect = 9e-04
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 7/112 (6%)
Query: 209 GKDSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWK-VPDDDGGQPIEKYVVD-KMD 264
S + PS P N ++ V + W P + Y +
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
A E + + + N R+ AV + G S+P+
Sbjct: 63 SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIF 114
Score = 36.3 bits (84), Expect = 0.007
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 72 TLKWNKP-KDDGGEPLEGYLV---EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
++W KP L GY + + + + ++ R+
Sbjct: 37 DIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRI 96
Query: 128 KALNKEGE---SEPLETF 142
A+ + G S+P++ F
Sbjct: 97 AAVTRGGVGPFSDPVKIF 114
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 52.6 bits (126), Expect = 1e-08
Identities = 18/108 (16%), Positives = 27/108 (25%), Gaps = 14/108 (12%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P L+V + + W + Y + + GPV
Sbjct: 4 SDVPRD-LEVVAATPTSLLISWDSGRG----SYQYYRITYGETGGNSPVQEFTVPGPVHT 58
Query: 283 LEVEGLIPNHKYKFRVRAVNKQG---------KSEPLTTTASIEAKNP 321
+ GL P Y V AV P++ E P
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/90 (16%), Positives = 21/90 (23%), Gaps = 4/90 (4%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P E+ + ++W Y I E + G
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTA 59
Query: 385 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
+ L G Y V AV P T
Sbjct: 60 TISGLKPGVDYTITVYAVTDHKPHADGPHT 89
Score = 43.0 bits (101), Expect = 3e-05
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 57 PEGP--LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETG------VWIPVGKTR 108
+ P LEV + W+ + + Y + Y G +P
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGRG----SYQYYRIT-YGETGGNSPVQEFTVPGPVHT 58
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
++GL PG +Y V A+
Sbjct: 59 ---ATISGLKPGVDYTITVYAVTDHKPHAD 85
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 56.4 bits (135), Expect = 1e-08
Identities = 44/317 (13%), Positives = 83/317 (26%), Gaps = 53/317 (16%)
Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----ISKDRFKIVN 477
K ++P + G F I + + + + D + I K R +
Sbjct: 25 KWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR 84
Query: 478 DDKSTKLKVFDSKRGDSG-IYTLAVKNSWG-TDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
K+ L + + DS Y V G +G + + P + G +
Sbjct: 85 RVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR-KPPSCIPETYELGTHDK 143
Query: 536 YYMVEKMETDTGK--VLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTAT 590
Y + K I W + N++ + ID Y + I + D+ +Y
Sbjct: 144 YGIDLYCGILYAKHYNNITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVH 202
Query: 591 NSQGKDQVFIEVVVTDKPSAPEGPIQWL---------------LTLT------------- 622
+ + I V + +T
Sbjct: 203 YDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV 262
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDT-AQYTV 681
+ WE + + L S + + + +NV YT
Sbjct: 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV-----------TEEYIGNTYTC 311
Query: 682 TATNSQGKDQVFIEVVV 698
N + VV+
Sbjct: 312 RGHNYYFDKTLTTTVVL 328
Score = 49.1 bits (116), Expect = 3e-06
Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 11/183 (6%)
Query: 533 PIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDT-AQYTVTATN 591
P + + ++ W + R ++ + I +D+ +Y T T
Sbjct: 52 PPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTT 111
Query: 592 SQGK-DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLM 650
G Q + + PS + + + ++ +
Sbjct: 112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYC----GILYAKHYNNI--TWYK 165
Query: 651 NDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG 707
N++ + ID Y + I + D+ +Y + + I V +
Sbjct: 166 NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS 225
Query: 708 PIQ 710
Sbjct: 226 QDH 228
Score = 28.6 bits (63), Expect = 6.4
Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 9/78 (11%)
Query: 178 VQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD------SVEVEVIVLDKPSPPGGPLK 231
++ L + + D+G Y + + S + V+ +
Sbjct: 175 TKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLIL 234
Query: 232 VSNVHA---EGVTLDWKV 246
++ E +
Sbjct: 235 DPKINVTIGEPANITCTA 252
Score = 28.3 bits (62), Expect = 9.8
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)
Query: 196 DAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDD 250
Y T NG V + PS ++ G+ L +
Sbjct: 101 SHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAK 156
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 52.0 bits (125), Expect = 1e-08
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVF 487
L D +V G E + V E W+ N + + +D R++ D K L
Sbjct: 14 PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72
Query: 488 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
D + D G Y + + A++ V
Sbjct: 73 DVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 29.2 bits (66), Expect = 1.5
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 551 IKW------IRTNDK---RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
+ W + D R + + + D +Y V Q + ++ +E
Sbjct: 39 VMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIVE 98
Score = 28.5 bits (64), Expect = 2.4
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
R + + + D +Y V Q + ++ +E
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIVE 98
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 54.6 bits (131), Expect = 1e-08
Identities = 29/201 (14%), Positives = 49/201 (24%), Gaps = 28/201 (13%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---- 489
SD++V + + G P EW + + + F S
Sbjct: 9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68
Query: 490 ----KRGDSGIYTLAVKNSWGTD--KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
R D+G YT V G + + + +TVL I V
Sbjct: 69 FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVLTCS 127
Query: 544 TDTG--KVLIKWIRTNDKRVTIDNVDYFTKI--------------TIRPLQRSDTAQYTV 587
G W + + + + P+ D+ +Y
Sbjct: 128 EHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYC 186
Query: 588 TATNSQGKDQVFIEVVVTDKP 608
A N G +
Sbjct: 187 QAQNGYGTAMRSEAAHMDAVE 207
Score = 54.2 bits (130), Expect = 2e-08
Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 27/177 (15%)
Query: 551 IKWIRTNDKRVTIDNVDYFTK-------------ITIRPLQRSDTAQYTVTATNSQGKDQ 597
++W + + IT + R D +YT + G++
Sbjct: 33 VEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNY 92
Query: 598 --VFIEVVVTDKPSAPEGPIQWLLTL-TDVTWE---------ISNYLQELHSSLMPISLE 645
V I + V PS P + +T+ + S++ +
Sbjct: 93 GEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152
Query: 646 SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ TID + P+ D+ +Y A N G +
Sbjct: 153 KTRAFMNSSFTIDPKS--GDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 42.3 bits (99), Expect = 2e-04
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 10/102 (9%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI------- 475
V P V G+ + G P W + I++++ D K
Sbjct: 103 VPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161
Query: 476 -VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
D KS L DSG Y +N +GT + +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 33.0 bits (75), Expect = 0.20
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 192 AQRADAGFYTVTAENINGKDSVE--VEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
R D G YT G++ E + + VL PS P + S L
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVL 124
Score = 31.1 bits (70), Expect = 0.93
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLD 221
+ L D+G Y A+N G S + ++
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 52.2 bits (125), Expect = 2e-08
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 219 VLDKPSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQP---IEKYVVDKMDEATGRWTPA 273
V D +P P ++ + + V + W Q + Y V +
Sbjct: 12 VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWR-TSFSASAKY 70
Query: 274 GETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
+ GL PN Y+F V + S
Sbjct: 71 KSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTW 106
Score = 51.8 bits (124), Expect = 3e-08
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 4/106 (3%)
Query: 311 TTTASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSP---IVGYIIEKKEKY 367
++ + P + D V ++W + Y + + +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 368 SPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
S K + + L YEF V+ S
Sbjct: 65 SA-SAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMT 109
Score = 45.2 bits (107), Expect = 6e-06
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 72 TLKWNKP---KDDGGEPLEGYLVE-KYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
+ W K+ + Y V + T TGL P Y+F V
Sbjct: 36 RVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSV 95
Query: 128 KALNKEGESEP 138
S
Sbjct: 96 MVTKNRRSSTW 106
Score = 30.6 bits (69), Expect = 0.61
Identities = 10/97 (10%), Positives = 21/97 (21%), Gaps = 14/97 (14%)
Query: 521 LKWNPPEDDGG---APIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
+ W + + Y V + + K T T + T
Sbjct: 37 VSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFS-- 94
Query: 578 QRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
V T ++ + T ++
Sbjct: 95 ---------VMVTKNRRSSTWSMTAHATTYEASGPSS 122
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 54.4 bits (130), Expect = 2e-08
Identities = 37/216 (17%), Positives = 61/216 (28%), Gaps = 17/216 (7%)
Query: 217 VIVLDKPSPPGGPLKVSNVHAEGVTLD--WKVPDDDG----GQPIEKYVVDKMDEATGRW 270
V K + G P E T W G G Y E T W
Sbjct: 21 VNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEW 80
Query: 271 T--PAGETEGPVT-GLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
P + G + Y ++ + + + ++ P
Sbjct: 81 KECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWT 140
Query: 328 PGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
+ D +++ W P + G ++ Y ++ KE W+ T
Sbjct: 141 LLNVSLTGIHAD-IQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMM--DPILTTSV 197
Query: 385 KVLDLIEGNQYEFRVLA--VNKGGPGEPSDPTAPHI 418
V L +YE RV + N G GE S+ +
Sbjct: 198 PVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTL 233
Score = 41.7 bits (97), Expect = 4e-04
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 200 YTVTAENINGK-DSVEVEVIVLDKPSPPGGP-LKVSNVHAEG----VTLDWKVP---DDD 250
Y + + G D V + +P PP + NV G + + W+ P D
Sbjct: 107 YCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQ 166
Query: 251 GGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA-VNKQGK--- 306
G + +Y + + +W T + V L + +Y+ RVR+ G
Sbjct: 167 KGWMVLEYELQYKEVNETKWKM--MDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGE 224
Query: 307 -SEPLTTT 313
SE L T
Sbjct: 225 FSEVLYVT 232
Score = 35.2 bits (80), Expect = 0.047
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 72 TLKWNKPK----DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
++W P+ G LE Y ++ + W + + V L EY+ RV
Sbjct: 154 QVRWEAPRNADIQKGWMVLE-YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRV 212
Query: 128 KA 129
++
Sbjct: 213 RS 214
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 51.2 bits (123), Expect = 3e-08
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
++ V G + + + + WL + + + +R +I + +++V DS
Sbjct: 9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVEVQDSVP 63
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
DSG+Y + G+D V V
Sbjct: 64 ADSGLYACVTSSPSGSDTTYFSVNV 88
Score = 42.4 bits (100), Expect = 3e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
++ V+ + AD+G Y + +G D+ V V D
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSG 95
Score = 41.6 bits (98), Expect = 6e-05
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 551 IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W+R R I ++ ++ +D+ Y ++ G D + V V+
Sbjct: 34 INWLRDGVQLAESNRTRITG----EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
Query: 606 DKPSAPEGP 614
D P GP
Sbjct: 90 DAL--PSGP 96
Score = 41.2 bits (97), Expect = 8e-05
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
L R I ++ ++ +D+ Y ++ G D + V V+D P GP
Sbjct: 43 LAESNRTRITG----EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL--PSGP 96
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 53.9 bits (129), Expect = 3e-08
Identities = 37/209 (17%), Positives = 59/209 (28%), Gaps = 34/209 (16%)
Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKW---------IRTNDKRVTIDNV 566
L C PED G IE+ + +V+I + RV +
Sbjct: 19 YLPCKFT-LSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSN 77
Query: 567 DYF---TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTL-T 622
D I + LQ SD Y + G + V KPS + +
Sbjct: 78 DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGN 137
Query: 623 DVTWE--------ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRS 674
D + + + S + M +++ N
Sbjct: 138 DFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA-----------SSE 186
Query: 675 DTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
+ Y+ T N G DQ + + V PS
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214
Score = 47.0 bits (111), Expect = 6e-06
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 5/127 (3%)
Query: 586 TVTATNSQGKDQVFIEVVVTDKPSAPEGP-IQWLLTLTDVTWEISNYLQELHSSLMPISL 644
+ +G+ ++ T P I+WL++ +D + + +
Sbjct: 9 RIEKA--KGET-AYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD-NY 64
Query: 645 ESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
+ D I + LQ SD Y + G + V KPS
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124
Query: 705 PEGPIQI 711
+
Sbjct: 125 TRCFVDG 131
Score = 45.1 bits (106), Expect = 2e-05
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 12/149 (8%)
Query: 470 KDRFKIVNDDKS---TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG---CSLKW 523
K R ++D + V + + D G Y VK + G +TVL + +
Sbjct: 69 KGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF 128
Query: 524 NPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRS 580
++ G + + + + + + +W + +D + I+++
Sbjct: 129 VDGSEEIGNDFK--LKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE 186
Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
+ Y+ T N G DQ + + V PS
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214
Score = 42.4 bits (99), Expect = 2e-04
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTL 242
+ + V Q +D G Y + G + + + VL KPS + S L
Sbjct: 83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKL 141
Score = 38.5 bits (89), Expect = 0.004
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 434 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
D G++F+ G EW + + + V ++
Sbjct: 129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV--ISVKNASSE 186
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLG 518
SG Y+ V+N G+D+ ++ V+
Sbjct: 187 YSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 32.0 bits (72), Expect = 0.53
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
+ + V+ A +G Y+ T +N G D + + V+ PS
Sbjct: 170 LAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP-PS 214
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 51.2 bits (123), Expect = 3e-08
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 341 VELAWTPP---EQNGGSPIVGYII---EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQ 394
+ L WT N PI G+ I +++ EG + L
Sbjct: 21 IMLKWTYIPSSNNNT--PIQGFYIYYRPTDSDNDSDYKR-DVVEGSKQWHMIGHLQPETS 77
Query: 395 YEFRVLAVNKGGPGEPSDP 413
Y+ ++ N+GG E S+
Sbjct: 78 YDIKMQCFNEGGESEFSNV 96
Score = 39.7 bits (93), Expect = 3e-04
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 225 PPGGPLKVSNVHAEGVT-----LDWK-VPDDDGGQPIEKYVV---DKMDEATGRWTPAGE 275
P GP + E V+ L W +P + PI+ + + + +
Sbjct: 4 PITGP---HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD-V 59
Query: 276 TEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
EG + L P Y +++ N+ G S +
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICE 100
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 73 LKWNK-PKDDGGEPLEGYLV----EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRV 127
LKW P + P++G+ + D ++ V + + + L P Y ++
Sbjct: 23 LKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKM 82
Query: 128 KALNKEGESEP 138
+ N+ GESE
Sbjct: 83 QCFNEGGESEF 93
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 50.8 bits (122), Expect = 3e-08
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 422 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDK 480
+K S + +V G + + + +WL N I +S ++ +
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
L + D Y V G +K + ++ V
Sbjct: 71 KRTLTISQCSLADDAAYQCVV----GGEKCSTELFV 102
Score = 35.8 bits (83), Expect = 0.008
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 551 IKW------IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 601
+KW I+ + + +++ +TI +D A Y + ++F++
Sbjct: 47 VKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
Score = 32.0 bits (73), Expect = 0.17
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE 695
M+ + +++ +TI +D A Y + ++F++
Sbjct: 58 MSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 50.9 bits (122), Expect = 4e-08
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
S G LK+ + L W Y + +++ E
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPR----- 63
Query: 283 LEVEGLIPNHKYKFRVRAVNKQG 305
+ + L P+ Y RVR + G
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLG 86
Score = 48.6 bits (116), Expect = 2e-07
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
+ + ++ + +EL W + Y + + ++ P+
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ-----DEEWHQMVLEPR 63
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 416
+ L Y RV + GPG S T+P
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 100
Score = 43.6 bits (103), Expect = 1e-05
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALN 131
L W + Y + + + EP + +T L P Y RV+ L
Sbjct: 27 ELTWAGSRPRNPGGNLSYELHVLNQDEEWH---QMVLEPRVLLTKLQPDTTYIVRVRTLT 83
Query: 132 KEGESEP 138
G
Sbjct: 84 PLGPGPF 90
Score = 26.7 bits (59), Expect = 9.8
Identities = 14/96 (14%), Positives = 20/96 (20%), Gaps = 22/96 (22%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L W Y + + D + RV + + T +R
Sbjct: 27 ELTWAGSRPRNPGGNLSYELHVLNQDEE----WHQMVLEPRVLLTKLQPDTTYIVR---- 78
Query: 580 SDTAQYTVTATNSQGK----DQVFIEVVVTDKPSAP 611
V G T PS P
Sbjct: 79 -------VRTLTPLGPGPFSPDHEFR---TSPPSGP 104
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 53.6 bits (128), Expect = 4e-08
Identities = 22/184 (11%), Positives = 52/184 (28%), Gaps = 15/184 (8%)
Query: 225 PPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
GP L E + W+ G P + ++++ + +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 283 LEVEGLIPNH------KYKFRVRAVNKQGKSEP-LTTTASIEAKNPFNQPGKPGTPEIKD 335
+ +P + RV A + + + + P +
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLAD----- 134
Query: 336 FDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
++ V L W PP + + + Y ++ + + + + +L +Y
Sbjct: 135 -ESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRY 193
Query: 396 EFRV 399
F V
Sbjct: 194 TFAV 197
Score = 49.3 bits (117), Expect = 1e-06
Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 2/103 (1%)
Query: 200 YTVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEK 257
+ +G + + + P G + + V L W P + +
Sbjct: 97 LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156
Query: 258 YVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
Y VD E T + L +Y F VRA
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199
Score = 35.8 bits (82), Expect = 0.029
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 23/119 (19%)
Query: 519 CSLKWNPPEDDGGAPIEY---YMVEKMETDTGKVLIKWIRTNDKR----VTIDNVDYFTK 571
C W G P +Y Y +E ++ R + + F
Sbjct: 39 CF--WEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVP 96
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTD---VTWE 627
+ +R VTA + + I + AP G + L + + W
Sbjct: 97 LELR-----------VTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWL 144
Score = 35.1 bits (80), Expect = 0.048
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 2/76 (2%)
Query: 56 DPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVG-KTREPEMD 113
P G + L+W P + Y V+ G V E
Sbjct: 124 APVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECV 183
Query: 114 VTGLTPGHEYKFRVKA 129
++ L Y F V+A
Sbjct: 184 LSNLRGRTRYTFAVRA 199
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 50.7 bits (121), Expect = 7e-08
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP--SPPGGPLKVSN 234
+ L + + G YT+ A N G+ S + +D P P P+ +N
Sbjct: 55 AANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTN 114
Query: 235 VHAEGVT 241
+
Sbjct: 115 STSGDPV 121
Score = 49.6 bits (118), Expect = 2e-07
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 446 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYT 498
+V G+P P+ WL N + + + L++ ++G YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 499 LAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
L N +G + + ++NP +
Sbjct: 80 LLAANPFGQASASIMAAFMDNPFEFNPED 108
Score = 44.2 bits (104), Expect = 1e-05
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 640 MPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
++ S + + + + YT+ A N G+ I
Sbjct: 39 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
Query: 700 DKP--SAPEGPIQI 711
D P PE PI
Sbjct: 99 DNPFEFNPEDPIPD 112
Score = 43.4 bits (102), Expect = 3e-05
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 554 IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP--SAP 611
I T + + + + YT+ A N G+ I D P P
Sbjct: 47 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
Query: 612 EGPI 615
E PI
Sbjct: 107 EDPI 110
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 52.5 bits (125), Expect = 8e-08
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 201 TVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEK 257
V + ++ + P L+V +V + W++ E+
Sbjct: 81 RVLCREGVRWRVMAIQDFKPFENLRLMAPIS-LQVVHVETHRCNISWEISQA--SHYFER 137
Query: 258 Y----VVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS 307
+ T P + + +E L P+ +Y+F+VR QG+
Sbjct: 138 HLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF 191
Score = 40.2 bits (93), Expect = 0.001
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLV--EKYDPETGVW----IPVGKTREPEMDV 114
L+V ++ C + W E +L + W + K ++ + +
Sbjct: 112 LQVVHVETHRCNISWEIS--QASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICL 169
Query: 115 TGLTPGHEYKFRVKALNKEGES 136
LTP +Y+F+V+ +GE
Sbjct: 170 ETLTPDTQYEFQVRVKPLQGEF 191
Score = 34.4 bits (78), Expect = 0.079
Identities = 21/154 (13%), Positives = 39/154 (25%), Gaps = 12/154 (7%)
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFN--QPGKPGTPEIKDF 336
+ + + L RV PF + P + ++
Sbjct: 63 ILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDF-----KPFENLRLMAPISLQVVHV 117
Query: 337 DTDFVELAW-TPPEQNGGSPIVGYIIEKKEKYSPIWE--KCAQTEGDTPKGKVLDLIEGN 393
+T ++W + + + WE + + L
Sbjct: 118 ETHRCNISWEISQASHYFERHLEFEARTLSP-GHTWEEAPLLTLKQKQEWICLETLTPDT 176
Query: 394 QYEFRVLAVNKGGP-GEPSDPTAPHIARAKKVSP 426
QYEF+V G S + P R K +
Sbjct: 177 QYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAAL 210
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 51.8 bits (124), Expect = 8e-08
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 58/197 (29%)
Query: 441 GSNFEFDINVI--GEPIPTKEWLCND----ITIISKDRFKIVNDDK-----STKLKVFDS 489
G + DI + I +W I K++ D + LK+
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTV-------------------LGCSLKWNPPEDDG 530
K D IY +++ ++ G + + L C +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTD---- 129
Query: 531 GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
+ + + K + + ++ S +A++ TA
Sbjct: 130 ------------------PELNLYQ-DGKHLKLSQ-----RVITHKWTTSLSAKFKCTAG 165
Query: 591 NSQGKDQVFIEVVVTDK 607
N K+ V +K
Sbjct: 166 NKVSKESSVEPVSCPEK 182
Score = 51.4 bits (123), Expect = 1e-07
Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 24/163 (14%)
Query: 545 DTGKVLIKWIRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTATNSQGKD--QVF 599
+ K I R + + K + I+ L+ D Y V+ +++GK+ +
Sbjct: 38 TSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKI 97
Query: 600 IEVVVTDKPSAPEGPIQWLLTLTDVTWEISN-YLQELHSSLMPISLESQYLMNDKRVTID 658
++ + ++ S P+ ++W N L + L + K + +
Sbjct: 98 FDLKIQERVSKPK-----------ISWTCINTTLTCEVMNGTDPEL--NLYQDGKHLKLS 144
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 701
++ S +A++ TA N K+ V +K
Sbjct: 145 Q-----RVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 39.5 bits (92), Expect = 0.001
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD--SVEVEVIVLDKPSPPGGPLKVS 233
+ L N L ++ + D Y V+ + GK+ ++ + ++ S P
Sbjct: 57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCI 116
Query: 234 NVH 236
N
Sbjct: 117 NTT 119
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 53.7 bits (128), Expect = 1e-07
Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 19/240 (7%)
Query: 200 YTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG-VTLDWKVPD--DDGGQPIE 256
YT G S I K +PP ++ + G + L W+ P D +
Sbjct: 12 YTFLISTTFGCTSSSDTEI---KVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHFKECTV 67
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASI 316
+Y + + + W + + L + + + ++ +
Sbjct: 68 EYELKYRNIGSETWKT--IITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAE 125
Query: 317 EAKNPFNQPGKPGTPEI---KDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
Q + ++ ++ +W P Y + + +
Sbjct: 126 TTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLD--TNYNLFYWYEGLDHALQ 183
Query: 374 CAQTEGDTPKG-----KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 428
C + L+ + + V ++ P S T K + P
Sbjct: 184 CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243
Score = 49.8 bits (118), Expect = 2e-06
Identities = 25/221 (11%), Positives = 53/221 (23%), Gaps = 22/221 (9%)
Query: 219 VLDKPSPPGGPLKVSNVHA-----EGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPA 273
V ++ + + WK P Y + E
Sbjct: 127 TYWISPQGIPETXVQDMDCVYYNWQYLLCSWK-PGIGVLLDT-NYNLFYWYEGLDHALQC 184
Query: 274 GE---TEGPVTG--LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
+ +G G + V ++ T ++ P
Sbjct: 185 VDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY- 243
Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD 388
+ ++L W+ P + Y IE +E + + + +
Sbjct: 244 --LTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT----ATVENETYTLKT 297
Query: 389 LIEGNQYEFRV---LAVNKGGPGEPSDPTAPHIARAKKVSP 426
E Q F V + + G S+ + + +S
Sbjct: 298 TNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSK 338
Score = 38.2 bits (88), Expect = 0.008
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
L + LKW+ P Y +E + +T + +
Sbjct: 244 LTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLV--TATVENETYTLKTTNET 301
Query: 121 HEYKFRVKA 129
+ F V++
Sbjct: 302 RQLCFVVRS 310
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 51.5 bits (123), Expect = 1e-07
Identities = 26/202 (12%), Positives = 56/202 (27%), Gaps = 50/202 (24%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 478
+ + G E + W ++ I ++ + D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG-------- 530
+ L + + K DS Y V++ K ++ V G + + G
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLTLTLE 120
Query: 531 --GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 588
++ K + +++ L+ D+ +T T
Sbjct: 121 SPPGS--------------SPSVQCRSPRGKNIQGGKT-----LSVSQLELQDSGTWTCT 161
Query: 589 ATNSQGKDQVFIEVVVTDKPSA 610
+Q K + I++VV A
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQKA 183
Score = 48.8 bits (116), Expect = 9e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
SD + G + + P+ + R K + K+ L V + D
Sbjct: 105 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 154
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLG 518
SG +T V + + + VL
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVLA 179
Score = 41.5 bits (97), Expect = 3e-04
Identities = 24/160 (15%), Positives = 51/160 (31%), Gaps = 41/160 (25%)
Query: 555 RTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV-FIEVVVTDKPSAPEG 613
R + +R D ++ + I+ L+ D+ Y + + + Q+ + +G
Sbjct: 55 RADSRRSLWDQGNF--PLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQG 112
Query: 614 PIQWLLTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFT 664
LTLT V + + K +++ +
Sbjct: 113 QS---LTLTLESPPGSSPSVQCRSPR---------------GKNIQGGKTLSVSQL---- 150
Query: 665 KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 704
+ D+ +T T +Q K + I++VV A
Sbjct: 151 -------ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
Score = 33.8 bits (77), Expect = 0.11
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
L V + D+G +T T K +++++VL
Sbjct: 142 GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 29.6 bits (66), Expect = 2.4
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKV-S 233
R+ N L ++ + D+ Y E+ EV+++V + L
Sbjct: 58 SRRSLWDQGNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANSDTHLLQGQ 113
Query: 234 NV----HAEGV---TLDWKVPD 248
++ + ++ + P
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPR 135
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 50.0 bits (120), Expect = 1e-07
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
+ + W PP QNG I GY I ++ G + L G +Y F
Sbjct: 35 IMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNF 92
Query: 398 RVLAVNKGGPGEPSDPT 414
RV A+ G G +D
Sbjct: 93 RVAALTINGTGPATDWL 109
Score = 38.9 bits (91), Expect = 9e-04
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 9/130 (6%)
Query: 209 GKDSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDG--GQPIEKYVVDKMD 264
S +V V L D PS P L + +++ + + W+ P GQ I Y +
Sbjct: 3 SGSSGDVAVRTLSDVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKIRYRK 60
Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTTASIEAKNP 321
+ G +EGL +Y FRV A+ G ++ L+ +
Sbjct: 61 ASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDE 120
Query: 322 FNQPGKPGTP 331
P G
Sbjct: 121 TRVPEVSGPS 130
Score = 34.6 bits (80), Expect = 0.028
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 72 TLKWNKPKDDG--GEPLEGYLV---EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
+ W P G+ + GY + + V + + GL G EY FR
Sbjct: 36 MIHWQPPAPATQNGQ-ITGYKIRYRKASRKSDVTETLV-SGTQLSQLIEGLDRGTEYNFR 93
Query: 127 VKALNKEGE---SEPL--ETFSSIIARDPYSKYTSVSS 159
V AL G ++ L ETF S + + + SS
Sbjct: 94 VAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSS 131
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 52.8 bits (126), Expect = 1e-07
Identities = 32/295 (10%), Positives = 70/295 (23%), Gaps = 46/295 (15%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
++ + S F + W ++ K + S+ L + + D
Sbjct: 8 PELVLNVSSTFVLTCSGSAPV----VWE-RMSQEPPQEMAKAQDGTFSSVLTLTNLTGLD 62
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM------ETDTG 547
+G Y +S G + K + + + ++ E
Sbjct: 63 TGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDP 122
Query: 548 KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
++++ V Y + + Y T + V +
Sbjct: 123 QLVVTLHEKKGDVAL--PVPYDHQRGF--SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178
Query: 608 PSAPEGPIQWL---------LTLT---------DVTWEISNYLQELHSSLMPISLESQYL 649
S+ + + +TL + W + L
Sbjct: 179 VSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPY 238
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV--FIEVVVTDKP 702
+ I + + D+ YT T S Q I + V +
Sbjct: 239 HIRSILHIPSA-----------ELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Score = 45.8 bits (108), Expect = 2e-05
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 11/122 (9%)
Query: 401 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 460
+ SD + + ++ +N VR G N VIG + EW
Sbjct: 160 TTIGDREVD-SDAYYVYRLQVSSINVSVNA---VQTVVRQGENITLMCIVIGNEVVNFEW 215
Query: 461 LCND------ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 514
+ ++ + +S L + ++ DSG YT V S + +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSI-LHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Query: 515 TV 516
+
Sbjct: 275 NI 276
Score = 37.8 bits (87), Expect = 0.008
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 16/168 (9%)
Query: 551 IKWIRTND----KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ---VFIEVV 603
+ W R + + + + + +T+ L DT +Y T +S+G + + +
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIF 87
Query: 604 VTDKPSAPEGPIQWLLTLTDVTWEISNYLQ-ELHSSLMPISLESQYLMNDKRVTIDNVDY 662
V D P+ P +T + + + ++L + V D+
Sbjct: 88 VPD-PTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRG 146
Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQ 710
F+ I + Y T + V + S+ +
Sbjct: 147 FSGI-------FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 187
Score = 36.2 bits (83), Expect = 0.030
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 175 VRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD---SVEVEVIVLDKPSPP 226
+ K Q +++ L + D G Y T + G + + + V D
Sbjct: 41 MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF 95
Score = 34.3 bits (78), Expect = 0.12
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENING--KDSVEVEVIVLDKP 223
+ L + A+ D+G YT +D + + V++
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282
Score = 29.7 bits (66), Expect = 3.0
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 17/109 (15%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIVLDKPSPPGGPLKVSN 234
+ Y+ + G + + Y + DS V L S V
Sbjct: 134 DVALPVPYDHQRG--FSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQT 191
Query: 235 VHAEG--------------VTLDWKVPDDDGGQPIEKYVVDKMDEATGR 269
V +G V +W P + G+ +E +D
Sbjct: 192 VVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 52.8 bits (126), Expect = 1e-07
Identities = 43/321 (13%), Positives = 80/321 (24%), Gaps = 67/321 (20%)
Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS 469
P +P+ P I S++ V AG +
Sbjct: 7 PGEPSPPSI-----------HPAQSELIVEAGDTLSLTCIDPDF-----------VRWTF 44
Query: 470 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDD 529
K F + ++K + ++ +G YT + N + + V V + +
Sbjct: 45 KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFLVGLPL 101
Query: 530 GGAPIEYYMVEKMETDTGKVLIKWIRTN------DKRVTIDNVDYFTKITIRPLQRSDTA 583
G +V TD I + D + T ++
Sbjct: 102 FGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA--YHRL 159
Query: 584 QYTVTATNSQGKDQ-VFIEVVVTDKPSAPEGPIQWL------------LTLT-------- 622
A + V + A P+ + T+
Sbjct: 160 CVRCAAQRDGTWLHSDKFTLKVREAIKAI--PVVSVPETSHLLKKGDTFTVVCTIKDVST 217
Query: 623 --DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 680
+ W N +Q N N + +TI + D+ +
Sbjct: 218 SVNSMWLKMN---------PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFM 268
Query: 681 VTATNSQGKDQVFIEVVVTDK 701
A N+ G V + V +K
Sbjct: 269 CYANNTFGSANVTTTLKVVEK 289
Score = 38.2 bits (88), Expect = 0.007
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 172 SGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDK 222
+ R + + L + A+ D+G + A N G +V + V++K
Sbjct: 239 NSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 48.4 bits (116), Expect = 2e-07
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
P+ P L + +TL W D+ G + Y V T G T
Sbjct: 4 PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTALAT--TVTG------TT 52
Query: 283 LEVEGLIPNHKYKFRVRAVNKQG----KSEPLTTT 313
+ GL + Y F V+A + G S ++
Sbjct: 53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVK 87
Score = 41.9 bits (99), Expect = 3e-05
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
L + TL W D+ G + GY V ++GL
Sbjct: 10 LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTTATISGLAAD 61
Query: 121 HEYKFRVKALNKEG-ESEP 138
Y F VKA + G S
Sbjct: 62 TSYTFTVKAKDAAGNVSAA 80
Score = 33.0 bits (76), Expect = 0.048
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKG 384
P P T + L+WT N G + GY + G T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTT--A 53
Query: 385 KVLDLIEGNQYEFRVLAVNK-GGPGEPSDP 413
+ L Y F V A + G S+
Sbjct: 54 TISGLAADTSYTFTVKAKDAAGNVSAASNA 83
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 48.7 bits (116), Expect = 2e-07
Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 4/77 (5%)
Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
+ + W + + Y + K K T V L YEF
Sbjct: 25 IRITWADNSLPKHQKITDSRYYTVRWKTNIPA-NTKYKNANATTLSYLVTGLKPNTLYEF 83
Query: 398 RVLAVNKGGPGEPSDPT 414
V+ S
Sbjct: 84 SVMVTKGRRSSTWSMTA 100
Score = 47.1 bits (112), Expect = 1e-06
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 18/99 (18%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE---KYVVDKMDEATGRWTPAGETE 277
P P ++ S + + + + W Q I Y V RW
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTV--------RWKTNIPAN 57
Query: 278 G-----PVTGLE--VEGLIPNHKYKFRVRAVNKQGKSEP 309
T L V GL PN Y+F V + S
Sbjct: 58 TKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 96
Score = 42.1 bits (99), Expect = 5e-05
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 57 PEGP---LEVSNIHKDGCTLKWNKP---KDDGGEPLEGYLVE--KYDPETGVWIPVGKTR 108
P P ++ S + D + W K Y V P + T
Sbjct: 8 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANAT- 66
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
VTGL P Y+F V S
Sbjct: 67 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTW 96
Score = 27.1 bits (60), Expect = 8.3
Identities = 8/77 (10%), Positives = 13/77 (16%), Gaps = 14/77 (18%)
Query: 521 LKWNPP---EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPL 577
+ W + YY V K + + T
Sbjct: 27 ITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFS-- 84
Query: 578 QRSDTAQYTVTATNSQG 594
V T +
Sbjct: 85 ---------VMVTKGRR 92
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 52.1 bits (124), Expect = 3e-07
Identities = 33/260 (12%), Positives = 71/260 (27%), Gaps = 41/260 (15%)
Query: 470 KDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTVLGCSLKWNPPE 527
++R + + + +++ + D G+Y G + +TV+ P
Sbjct: 79 RERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-----KPTN 133
Query: 528 DDGGAPIEYYMVEKMETDTGKV-----------LIKWIR-------TNDKRVTIDNVDYF 569
G + + ++ W + R V
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Query: 570 TKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPI--QWLLTLTDVTWE 627
++ + P + + + + + + V +P W L DV
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253
Query: 628 ---ISNYLQELHSSLMPISLESQYLMNDKRVTID-NVDYFTKITIRPLQRSDTAQYTVTA 683
+N P + E + + + T P+ S Y A
Sbjct: 254 CKADAN----------PPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 684 TNSQGKDQVFIEVVVTDKPS 703
TN G +EV +T+ +
Sbjct: 304 TNPIGTRSGQVEVNITEAAA 323
Score = 48.6 bits (115), Expect = 3e-06
Identities = 28/183 (15%), Positives = 42/183 (22%), Gaps = 46/183 (25%)
Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLAVKNSWGTDK 509
G+P W + N + + ++ S+ V K
Sbjct: 162 GKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFK 221
Query: 510 GTAKVTV-----------------------LGCSLKWNPPEDDGGAPIEYYMVEKMETDT 546
+ + V L C NPP EY
Sbjct: 222 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPP------ATEY---------- 265
Query: 547 GKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
W N T P+ S Y ATN G +EV +T+
Sbjct: 266 -----HWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320
Query: 607 KPS 609
+
Sbjct: 321 AAA 323
Score = 34.7 bits (79), Expect = 0.10
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPS 224
T + AG Y A N G S +VEV + + +
Sbjct: 283 RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAA 323
Score = 32.0 bits (72), Expect = 0.66
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 6/96 (6%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 481
+ P + + + + P T+ W + ++ V
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----VEAQNR 283
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
T +G Y N GT G +V +
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 48.5 bits (116), Expect = 3e-07
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 341 VELAWTPP---EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
ELAW PP E+NG I+ Y + ++ S Q + + L Y+
Sbjct: 25 TELAWDPPVLAERNG--RIISYTVVFRDINSQQEL---QNITTDTRFTLTGLKPDTTYDI 79
Query: 398 RVLAVNKGGPGEPSDPT 414
+V A G G S
Sbjct: 80 KVRAWTSKGSGPLSPSI 96
Score = 38.4 bits (90), Expect = 8e-04
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 27/104 (25%)
Query: 225 PPGGPLKVSNVHAEGVT-----LDWKVPDDDG--GQPIEKYVVDKMDEATGRWTPAGETE 277
P G P N+H G+T L W P G+ I Y V + +
Sbjct: 8 PSGFP---QNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTV--------VFRDINSQQ 55
Query: 278 -----GPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
T + GL P+ Y +VRA +G S + +
Sbjct: 56 ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSR 99
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 72 TLKWNKP-KDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
L W+ P + + Y V + T + +TGL P Y +V+A
Sbjct: 26 ELAWDPPVLAERNGRIISYTV-VFRDINSQQELQNITTDTRFTLTGLKPDTTYDIKVRAW 84
Query: 131 NKEGESEP 138
+G
Sbjct: 85 TSKGSGPL 92
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 52.4 bits (126), Expect = 3e-07
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-LCND--ITIISKDRFKIVNDDKST 482
I + + V G +F G+P P W ++ S R + D
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---G 441
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
L+V ++ D+G Y N+ G D A + V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 39.7 bits (93), Expect = 0.003
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+ + L VR AQ D G Y A N G DS+ + V
Sbjct: 436 TVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 37.8 bits (88), Expect = 0.011
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 551 IKWIRTNDKRVTIDNVDYFT-----KITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
I W+ V+ + T + +R Q D Y A N+ G D + + V
Sbjct: 417 ILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 33.9 bits (78), Expect = 0.18
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 699
+ +R Q D Y A N+ G D + + V
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 48.5 bits (116), Expect = 3e-07
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 341 VELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
+ + W + Y I Q ++ +L+ QY V
Sbjct: 35 ISVHWEHV-LEK--IVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEV 91
Query: 400 LAVNKGGPGEPSDPT 414
A N G G PSD
Sbjct: 92 GACNSAGCGPPSDMI 106
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 72 TLKWNKPKDDGGEPLEGYLV---EKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVK 128
++ W + +E Y + +D E ++E + L P +Y V
Sbjct: 36 SVHWEHVL---EKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVG 92
Query: 129 ALNKEGE---SEPLE 140
A N G S+ +E
Sbjct: 93 ACNSAGCGPPSDMIE 107
Score = 36.6 bits (85), Expect = 0.006
Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 6/109 (5%)
Query: 209 GKDSVEVEVIVL-DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
S + D PS + V + + +++ W+ +
Sbjct: 3 SGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL--EKIVESYQIRYWAAHDK 60
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
+ +E L+P+ +Y V A N G S+ +
Sbjct: 61 EEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAF 109
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 48.2 bits (115), Expect = 3e-07
Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 219 VLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEG 278
++ P+ P G V + L W Y V + ++ G +T T
Sbjct: 1 MVSAPAFPTGLSAVLDSSGNTANLTWNAAPGANS-----YNVKRSTKSGGPYTTIA-TNI 54
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP----LTTTASIE 317
T G+ KY + V AV+ ++ + +E
Sbjct: 55 TSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQYPKLE 97
Score = 41.2 bits (97), Expect = 9e-05
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 72 TLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTR-EPEMDVTGLTPGHEYKFRVKAL 130
L WN Y V++ G + + TG+ G +Y + V A+
Sbjct: 23 NLTWNAAPG-----ANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAV 77
Query: 131 NKEGESEP 138
+ E+
Sbjct: 78 SNGVETLN 85
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 400
L W Y +++ K + A T + G +Y + V
Sbjct: 22 ANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNITSTN-YTDTGVATGTKYYYVVS 75
Query: 401 AVNKGGPGEPSDPTA 415
AV+ G S
Sbjct: 76 AVSNGVETLNSAEAI 90
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 50.4 bits (120), Expect = 4e-07
Identities = 17/143 (11%), Positives = 35/143 (24%), Gaps = 28/143 (19%)
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL------LTLT---- 622
+ S Y + + + V + + LT+T
Sbjct: 70 VVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVN 129
Query: 623 -----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
V W LMP +E + V + + L +
Sbjct: 130 AFPHPHVQW------------LMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 678 QYTVTATNSQGKDQ-VFIEVVVT 699
T N + + V++ ++
Sbjct: 178 PVTCVGKNDKEEAHGVYVSGYLS 200
Score = 44.3 bits (104), Expect = 4e-05
Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 51/199 (25%)
Query: 430 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 489
+ + +V G D+ I P F I + L V +
Sbjct: 30 KLGPGEEQVLIGR-MHHDVIFIEWPFRG--------------FFDIHRSANTFFLVVTAA 74
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKV 549
G Y +K ++V+ P E+ + V
Sbjct: 75 NISHDGNYLCRMKLGETEVTKQEHLSVV-------KP------LTLSVHSERSQFPDFSV 121
Query: 550 L-------------IKWIRTN---------DKRVTIDNVDYFTKITIRPLQRSDTAQYTV 587
L ++W+ + V + + L + T
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 588 TATNSQGKDQ-VFIEVVVT 605
N + + V++ ++
Sbjct: 182 VGKNDKEEAHGVYVSGYLS 200
Score = 42.7 bits (100), Expect = 1e-04
Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 4/98 (4%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND----ITIISKDRFKIVNDD 479
V P + S V P P +WL + + D
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
+ + T KN G L
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYL 199
Score = 34.2 bits (78), Expect = 0.083
Identities = 3/42 (7%), Positives = 8/42 (19%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ S Y + + + V +
Sbjct: 70 VVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS 111
Score = 34.2 bits (78), Expect = 0.086
Identities = 13/137 (9%), Positives = 34/137 (24%), Gaps = 23/137 (16%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVS---------NVHAEGV-- 240
A + G Y + + + + + V+ + +
Sbjct: 74 ANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPH 133
Query: 241 -TLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVR 299
+ W +P+ P A G E +G ++ L
Sbjct: 134 PHVQWLMPEGVEPAPT---------AANGGVMK--EKDGSLSVAVDLSLPKPWHLPVTCV 182
Query: 300 AVNKQGKSEPLTTTASI 316
N + ++ + + +
Sbjct: 183 GKNDKEEAHGVYVSGYL 199
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 50.9 bits (121), Expect = 5e-07
Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 38/261 (14%)
Query: 463 NDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTV 516
+ R + V + L++F + D G YT L V G+ + V
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Query: 517 LGCSLKWNPPEDDGGAPIEYYMVEKM-----ETDTGK--VLIKWIR--------TNDKRV 561
L P++ E + + G+ I W +
Sbjct: 115 LA------KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF 168
Query: 562 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD----QVFIEVVVTDKPSAPEGPIQW 617
V + + P + D T + + V + V + S W
Sbjct: 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW 228
Query: 618 LLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
L + T + P + + V ++ IRP+ +
Sbjct: 229 YLGQNEATLT-------CDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINT 281
Query: 678 QYTVTATNSQGKDQVFIEVVV 698
TN+ G Q + V V
Sbjct: 282 TLICNVTNALGARQAELTVQV 302
Score = 43.5 bits (102), Expect = 2e-04
Identities = 23/161 (14%), Positives = 42/161 (26%), Gaps = 10/161 (6%)
Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKST---KLKVFDSKRGDSGIYTLAVKNSWGT- 507
G P W + + + + T + S + D T V++
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 508 -DKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGK---VLIKWIRTNDKRVTI 563
T +TV D+ + + W +
Sbjct: 204 PQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR-SNPEPTGYNWST-TMGPLPP 261
Query: 564 DNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
V ++ IRP+ + TN+ G Q + V V
Sbjct: 262 FAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 39.7 bits (92), Expect = 0.003
Identities = 28/207 (13%), Positives = 54/207 (26%), Gaps = 36/207 (17%)
Query: 516 VLGCSLKWNPPEDDGGAPIEYY------MVEKMETDTGKVLIKWIRTNDKRVTIDNVDYF 569
L C L+ E + + + + G + R +
Sbjct: 19 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRN 78
Query: 570 TKITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLL------TLT 622
+ + L+ D YT + T QG V I + V KP + L
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138
Query: 623 ----------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQ 672
+TW + ++ VT+ ++ + P
Sbjct: 139 CVSTGGRPPAQITWHSDL--GGMPNT------SQVPGFLSGTVTVTSL-----WILVPSS 185
Query: 673 RSDTAQYTVTATNSQGKDQVFIEVVVT 699
+ D T + + + V +T
Sbjct: 186 QVDGKNVTCKVEHESFEKPQLLTVNLT 212
Score = 31.6 bits (71), Expect = 0.74
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+L +R + N G E+ V V
Sbjct: 267 GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 47.8 bits (114), Expect = 8e-07
Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 341 VELAWTPP---EQNGGSPIVGYII-------EKKEKYSPIWEKCAQTEGDTPKGKVLDLI 390
E+ W P G + GY I K I +K +G G + L
Sbjct: 31 AEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88
Query: 391 EGNQYEFRVLAVNKGGPGEPSDPT 414
+ Y V VN G G S
Sbjct: 89 PFSHYTLNVRVVNGKGEGPASPDR 112
Score = 33.9 bits (78), Expect = 0.041
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 221 DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDGGQ-PIEKYVV-----DKMDEATGRWTPA 273
D P PG ++V+ V++ + W + ++ Y + + R
Sbjct: 12 DLPMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 274 G--ETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
+G T + GL P Y VR VN +G S
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFN 115
Score = 30.5 bits (69), Expect = 0.76
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 109 EPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ + GL P Y V+ +N +GE
Sbjct: 79 KTHGMLPGLEPFSHYTLNVRVVNGKGEGPA 108
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 47.7 bits (113), Expect = 8e-07
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCN---------DITIISKDRFKIVNDD 479
+ V+ G + F V E + PT +W + K+ F+ +
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+ ++++ +K +G Y V D + + V
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 109
Score = 40.7 bits (95), Expect = 2e-04
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
+ W ++ + + L+ + + + Y ++ I + + Y
Sbjct: 41 TIKWFKGKWMDLASKAGKHLQLKETFERHSRV-------YTFEMQIIKAKDNFAGNYRCE 93
Query: 683 ATNSQGKDQVFIEVVVTDKPSAP 705
T D ++ V +
Sbjct: 94 VTYKDKFDSCSFDLEVHESTGTT 116
Score = 38.8 bits (90), Expect = 0.001
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPG 227
Y ++ + A+ AG Y + DS ++ V +
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117
Score = 36.9 bits (85), Expect = 0.004
Identities = 8/75 (10%), Positives = 18/75 (24%), Gaps = 14/75 (18%)
Query: 551 IKWIRTNDKRVTIDNVDYFT--------------KITIRPLQRSDTAQYTVTATNSQGKD 596
IKW + + + ++ I + + Y T D
Sbjct: 42 IKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101
Query: 597 QVFIEVVVTDKPSAP 611
++ V +
Sbjct: 102 SCSFDLEVHESTGTT 116
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 47.5 bits (113), Expect = 8e-07
Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 325 PGKPGTPEIKDFDTDFVELAWTP-PEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPK 383
P +P + + V L W S + GY + Y + Q
Sbjct: 18 PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV----FYRTSSQNNVQVLNTNKT 73
Query: 384 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 413
L L Y V A GG G S+
Sbjct: 74 SAELVLPIKEDYIIEVKATTDGGDGTSSEQ 103
Score = 36.7 bits (85), Expect = 0.004
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 72 TLKWNKPKDDGGE-PLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKAL 130
L W + K E + GY V Y + + V T + ++ L +Y VKA
Sbjct: 35 LLNWEQVKAMENESEVTGYKV-FYRTSSQNNVQVLNTNKTSAELV-LPIKEDYIIEVKAT 92
Query: 131 NKEGE---SEPLETF 142
G+ SE +
Sbjct: 93 TDGGDGTSSEQIRIP 107
Score = 31.7 bits (72), Expect = 0.24
Identities = 22/114 (19%), Positives = 31/114 (27%), Gaps = 18/114 (15%)
Query: 209 GKDSVEVEVIVLDKPSPPGGPLKVS-NVHAEGVTLDWK-VPDDDGGQPIEKYVVDKMDEA 266
S V V P P P V N V L+W+ V + + Y V
Sbjct: 3 SGSSGTVNVTTKKTP-PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKV------ 55
Query: 267 TGRWTPAGETEGPVTGLE----VEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
+ + + V L Y V+A G SE +
Sbjct: 56 --FYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIP 107
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 46.6 bits (111), Expect = 2e-06
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 326 GKPGTPEIKDFDTDFVELAWTPP---EQNGGSPIVGYII----EKKEKYSPIWEKCAQTE 378
G P ++ + +++ W P QNG I GY I +
Sbjct: 17 GPPMDVTLQPVTSQSIQVTWKAPKKELQNG--VIRGYQIGYRENSPGSNGQYSIVEMKAT 74
Query: 379 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
GD+ + +L + QY V A N+ G G S
Sbjct: 75 GDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Score = 35.4 bits (82), Expect = 0.015
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 212 SVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVTLDWKVPDDDG--GQPIE---KYVVDKMD 264
S + P PP + + V ++ + + WK P + G Y +
Sbjct: 3 SGSSGISTEEAAPDGPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 265 EATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
+ G ++ L +Y V+A N+ G S + T
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINAT 113
Score = 31.6 bits (72), Expect = 0.33
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 72 TLKWNKPKDDG--GEPLEGYLV---EKYDPETGVWIPVGKT---REPEMDVTGLTPGHEY 123
+ W PK + G + GY + E G + V + L +Y
Sbjct: 33 QVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQY 91
Query: 124 KFRVKALNKEGESEP 138
V+A N+ G
Sbjct: 92 GVVVQAFNRAGTGPS 106
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 48.1 bits (114), Expect = 2e-06
Identities = 26/171 (15%), Positives = 47/171 (27%), Gaps = 40/171 (23%)
Query: 549 VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---QVFIEVVVT 605
+W++ + D + K + +Y+ Q+ V
Sbjct: 30 TGHRWLK-GGVVLKEDALPG-QKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVK 87
Query: 606 DKPS---APEG--------------PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQY 648
S EG W W + S + S+
Sbjct: 88 AVKSSEHINEGETAMLVCKSESVPPVTDW-------AW-----YKITDSEDKALMNGSE- 134
Query: 649 LMNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNSQGKDQVFIEVVV 698
R + + +++ I L +D QY T+S+G DQ I + V
Sbjct: 135 ----SRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 47.7 bits (113), Expect = 2e-06
Identities = 28/192 (14%), Positives = 54/192 (28%), Gaps = 31/192 (16%)
Query: 431 DQLSDIKVRAGSNFEFDINVIGEPIPTKE--WLCNDITIISKDRFKIVNDDKSTKLKVFD 488
+ GS ++ WL + + + K +
Sbjct: 3 GTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE-------DALPGQKTEFKV 55
Query: 489 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPED---------------DGGAP 533
G Y+ GTA + + G + P
Sbjct: 56 DSDDQWGEYSCVFLPE---PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPP 112
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR-SDTAQYTVTATNS 592
+ + K+ K L+ ++ R + + +++ I L +D QY T+S
Sbjct: 113 VTDWAWYKITDSEDKALMN---GSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169
Query: 593 QGKDQVFIEVVV 604
+G DQ I + V
Sbjct: 170 KGSDQAIITLRV 181
Score = 28.8 bits (64), Expect = 4.0
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 195 ADAGFYTVTAENINGKDSVEVEVIV 219
AD G Y + G D + + V
Sbjct: 157 ADPGQYRCNGTSSKGSDQAIITLRV 181
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 45.9 bits (109), Expect = 2e-06
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ V G V +P P W+ + + + S L + +
Sbjct: 16 EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGP 66
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTV 516
D G Y+ +S + + V++
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSI 91
Score = 35.5 bits (82), Expect = 0.007
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQV--FIEVVVTD 606
I W++ + + + + + D Y+ AT+S Q + + + +
Sbjct: 42 IHWMK-DGVPLPLPPSPVLI---LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 32.8 bits (75), Expect = 0.076
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENING--KDSVEVEVIVLD 221
L + L + D G Y+ A + + ++S V + +++
Sbjct: 52 PLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
Score = 31.6 bits (72), Expect = 0.18
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQV--FIEVVVTD 700
+ + D Y+ AT+S Q + + + +
Sbjct: 60 ILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 13/98 (13%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-------------FKIVND 478
+ G + E +G P+P +W +
Sbjct: 27 APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ 86
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
++ + + D+G Y N + T V
Sbjct: 87 HAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 35.4 bits (81), Expect = 0.019
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
++ W Q + + ++ T T I+I L DT Y
Sbjct: 52 EIQWWFEG--QGPNDICSQLWDGARLDRVHIHATYHQHAAST-ISIDTLVEEDTGTYECR 108
Query: 683 ATNSQGKDQVFIEVVVT 699
A+N ++ + V
Sbjct: 109 ASNDPDRNHLTRAPRVK 125
Score = 33.8 bits (77), Expect = 0.059
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVT 605
+I L DT Y A+N ++ + V
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 31.5 bits (71), Expect = 0.36
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
H + + + D G Y A N ++ + V
Sbjct: 85 HQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 48.3 bits (114), Expect = 3e-06
Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 18/236 (7%)
Query: 201 TVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH-----AEGVTLDWKVPDDDGGQPI 255
T+ N N + + + + S L + V E + W+ + +
Sbjct: 9 TILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNL 68
Query: 256 EKYVVDKM--DEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
+ K ++ + + +E +G +++ + F V+ + + P
Sbjct: 69 TLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPRE---PRRQA 125
Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEK 373
+ P P + +EL W + + ++++ + + W +
Sbjct: 126 TQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTE 182
Query: 374 CAQTEGDTPKGKVLDLIEGNQYEFRV---LAVNKGGPGEPSDPTAPHIARAKKVSP 426
Q+ K + + +Y FRV G S+ + P +
Sbjct: 183 --QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKE 236
Score = 44.0 bits (103), Expect = 8e-05
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 200 YTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
+ V ++ +++ L P P L + + + L+W +
Sbjct: 111 FVVQLQDPREPRRQATQMLKLQNLVIPWAPEN-LTLHKLSESQLELNWNNRFLNHCL--- 166
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
+++V + WT + + +Y FRVR+
Sbjct: 167 EHLVQYRTDWDHSWTEQSVDYR--HKFSLPSVDGQKRYTFRVRS 208
Score = 43.3 bits (101), Expect = 1e-04
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
L + + + L WN + LE +LV+ W + + +
Sbjct: 143 LTLHKLSESQLELNWNNRFLN--HCLE-HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQ 199
Query: 121 HEYKFRVKA 129
Y FRV++
Sbjct: 200 KRYTFRVRS 208
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 47.7 bits (113), Expect = 3e-06
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 11/134 (8%)
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
L ++ ++ Y + A + + + +P PG + +D +
Sbjct: 63 LLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLL 115
Query: 343 LAWTPP--EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVL--DLIEGNQYEFR 398
L W+ P N + Y + + P + P ++ L G Y R
Sbjct: 116 LTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR 175
Query: 399 VLAVNKGGPGEPSD 412
V A + S+
Sbjct: 176 VRAWAQAYNTTWSE 189
Score = 43.1 bits (101), Expect = 1e-04
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 201 TVTAENINGKD-SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE--K 257
+ A S + V KP PG L V ++ + L W P
Sbjct: 77 DLWAGQQLLWKGSFKPSEHV--KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLT 133
Query: 258 YVVD--KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEP 309
Y V+ ++ P + L Y+ RVRA + +
Sbjct: 134 YAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTW 187
Score = 32.7 bits (74), Expect = 0.24
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEG------YLVEKYDPETGVWIPVGKTREPEMDV 114
L V D L W+ P E + ++ +
Sbjct: 104 LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAA 163
Query: 115 TGLTPGHEYKFRVKALNKEGESEP 138
+ L G Y+ RV+A + +
Sbjct: 164 STLKSGISYRARVRAWAQAYNTTW 187
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 46.2 bits (110), Expect = 3e-06
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 341 VELAWTPP---EQNGGSPIVGYII--EKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
V ++W PP +NG I Y + E + + ++ L + +Y
Sbjct: 35 VRVSWVPPPADSRNG--VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEY 92
Query: 396 EFRVLAVNKGGPGEPSDPT 414
V A GPG S P
Sbjct: 93 RVWVRAHTDVGPGPESSPV 111
Score = 36.6 bits (85), Expect = 0.007
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 21/119 (17%)
Query: 209 GKDSVEVEVIVL-DKPS-PPGGPLKVSNVHAEGVT-----LDWKVPDDDG--GQPIEKYV 259
S +E PS PP V + + W P D G I +Y
Sbjct: 3 SGSSGTIEARTAQSTPSAPP------QKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYS 55
Query: 260 VD--KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQG---KSEPLTTT 313
V +D + ++ GL +Y+ VRA G +S P+
Sbjct: 56 VAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR 114
Score = 32.7 bits (75), Expect = 0.14
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 72 TLKWNKPKDDG--GEPLE---GYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFR 126
+ W P D G + Y + + D+ GL EY+
Sbjct: 36 RVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVW 95
Query: 127 VKALNKEGESEP 138
V+A G
Sbjct: 96 VRAHTDVGPGPE 107
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 47.6 bits (113), Expect = 3e-06
Identities = 24/196 (12%), Positives = 53/196 (27%), Gaps = 35/196 (17%)
Query: 432 QLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI---------VNDDKS 481
+I G + P WL + + D + +
Sbjct: 8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVV 67
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLGCSLKWNPPEDDGGAPIEYYMVE 540
++L++ + D+G Y V T V + G PED
Sbjct: 68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED----------RT 117
Query: 541 KMETDTGK-----------VLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTA 589
V + W++ + + + + ++ + T+ ++ A
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAP-GHGPQRSLHVPGLNKTSSFSCEA 175
Query: 590 TNSQGKDQ-VFIEVVV 604
N++G + V
Sbjct: 176 HNAKGVTTSRTATITV 191
Score = 39.9 bits (93), Expect = 0.001
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 481
+ PY + D V A + F G P P WL + + + +
Sbjct: 104 EGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-------HG 155
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVL 517
+ + + ++ N+ G T TA +TVL
Sbjct: 156 PQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 36.4 bits (84), Expect = 0.015
Identities = 22/150 (14%), Positives = 46/150 (30%), Gaps = 15/150 (10%)
Query: 554 IRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPE 612
+ D+ +++ I LQ SDT QY V + P
Sbjct: 52 TQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPY--- 108
Query: 613 GPIQWLLTLTDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIR 669
+L D T + + P+ L +L + + + + ++
Sbjct: 109 ----FLEEPEDRTVAANTPFNLSCQAQGPPEPVDL--LWLQDAVPLATAP-GHGPQRSLH 161
Query: 670 PLQRSDTAQYTVTATNSQGKDQ-VFIEVVV 698
+ T+ ++ A N++G + V
Sbjct: 162 VPGLNKTSSFSCEAHNAKGVTTSRTATITV 191
Score = 32.2 bits (73), Expect = 0.39
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPS 224
++L + Q +D G Y + S V + P
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPY 108
Score = 27.9 bits (62), Expect = 8.3
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVT 699
++ +Q + D+ +++ I LQ SDT QY V +
Sbjct: 45 ELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE 104
Query: 700 DKPS 703
P
Sbjct: 105 GLPY 108
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 45.4 bits (107), Expect = 4e-06
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 12/97 (12%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDIT---------IISKDRFKIVNDD 479
+ D +V G + F V G + P +W + D + +
Sbjct: 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
+L + D++ +G Y V D +TV
Sbjct: 70 YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 35.4 bits (81), Expect = 0.010
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 7/78 (8%)
Query: 623 DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVT 682
V W ++ + L Y K Y ++ I Q + T Y
Sbjct: 38 VVKWFKGKWVDLSSKVGQHLQLHDSYDRASK-------VYLFELHITDAQPAFTGSYRCE 90
Query: 683 ATNSQGKDQVFIEVVVTD 700
+ D + V +
Sbjct: 91 VSTKDKFDCSNFNLTVHE 108
Score = 33.8 bits (77), Expect = 0.043
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLD 221
Y +L + AQ A G Y + D + V +
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 33.4 bits (76), Expect = 0.048
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 567 DYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
Y ++ I Q + T Y + D + V +
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 45.1 bits (106), Expect = 4e-06
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 223 PSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTG 282
+ N+ A +TL WKV D++ Y + E E
Sbjct: 8 AIQVFD-VTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSNLNVSEPR----- 60
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTAS 315
+ GL + Y V V + P
Sbjct: 61 AVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVH 93
Score = 35.0 bits (80), Expect = 0.015
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
+ NI TL W K D+ Y + + V + R + GL
Sbjct: 14 VTAVNISATSLTLIW-KVSDNESSSNYTYKIHVAGETDSSNLNVSEPR---AVIPGLRSS 69
Query: 121 HEYKFRVKALNKEGESEP 138
Y V + + E P
Sbjct: 70 TFYNITVCPVLGDIEGTP 87
Score = 28.5 bits (63), Expect = 2.4
Identities = 11/74 (14%), Positives = 16/74 (21%), Gaps = 12/74 (16%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEG---DTPKGKVLDLIEGNQYEF 397
+ L W + S Y + P+ + L Y
Sbjct: 24 LTLIWKVSDNESSSNYT---------YKIHVAGETDSSNLNVSEPRAVIPGLRSSTFYNI 74
Query: 398 RVLAVNKGGPGEPS 411
V V G P
Sbjct: 75 TVCPVLGDIEGTPG 88
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 48.0 bits (114), Expect = 4e-06
Identities = 39/282 (13%), Positives = 69/282 (24%), Gaps = 64/282 (22%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
+ V V+ P + +W N + ++ +
Sbjct: 9 PWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP----------SYRITSASVN 58
Query: 493 DSGIYTLAVKNSWGTDKGTAKVT-------------------VLGCSLKWNPPEDDGGAP 533
DSG Y S +D ++ L C + +
Sbjct: 59 DSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYN---- 114
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQ 593
+ + R N K + + + +TI S Y +
Sbjct: 115 -----------------VLYYR-NGKAFKFFHWN--SNLTILKTNISHNGTYHCSGMGKH 154
Query: 594 GKDQVFIEVVVTDKPSAPEGPIQWLLTLTD---VTWEISNYLQ-ELHSSLMPISLESQYL 649
I V V + AP L + VT L E L L+ +
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT------LSCETKLLLQRPGLQLYFS 208
Query: 650 MNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691
T+ + ++ I +R D+ Y A G
Sbjct: 209 FYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVL 250
Score = 41.8 bits (98), Expect = 4e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
+ + +N+ L + + G Y + + S + V V + P V++
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181
Query: 236 HAEG--VTL 242
EG VTL
Sbjct: 182 LLEGNLVTL 190
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 16/156 (10%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+W N I +D+ +Y S D + +E+
Sbjct: 34 TQWFL-NGTATQTST----PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHR--GWLL 86
Query: 611 PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP 670
+ + + H+ + Y N K + + + +TI
Sbjct: 87 LQVSSRVFTEGEPLALR-------CHAWKDKLVYNVLYYRNGKAFKFFHWN--SNLTILK 137
Query: 671 LQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
S Y + I V V + AP
Sbjct: 138 TNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Score = 38.0 bits (88), Expect = 0.007
Identities = 22/198 (11%), Positives = 49/198 (24%), Gaps = 25/198 (12%)
Query: 408 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDIT 466
SDP I R + Q+S G + + + +
Sbjct: 70 SGRSDPIQLEIHRGWLLL------QVSSRVFTEGEPLALRCHAWKDKLVYNVLYY----- 118
Query: 467 IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
++ ++ L + + +G Y + VTV + P
Sbjct: 119 ---RNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE---LFPAP 172
Query: 527 EDDGGAPIEYYMVEKME------TDTGKVLIKWIRTNDK-RVTIDNVDYFTKITIRPLQR 579
+ + + ++ + T+ + ++ I +R
Sbjct: 173 VLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARR 232
Query: 580 SDTAQYTVTATNSQGKDQ 597
D+ Y A G
Sbjct: 233 EDSGLYWCEAATEDGNVL 250
Score = 34.9 bits (80), Expect = 0.065
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENING---KDSVEVEVIVL 220
+ ++ + +++ + A+R D+G Y A +G K S E+E+ VL
Sbjct: 214 KTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 47.6 bits (112), Expect = 6e-06
Identities = 17/158 (10%), Positives = 45/158 (28%), Gaps = 25/158 (15%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEG------------------ 613
+ ++ +Q++D YT + V + P P
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQST 145
Query: 614 ------PIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKIT 667
+ W+ + T E + + + ++ + + + I
Sbjct: 146 EEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS-IK 204
Query: 668 IRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
++ ++ SD YT + + + + I + V
Sbjct: 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Score = 46.4 bits (109), Expect = 1e-05
Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 60/234 (25%)
Query: 434 SDIKVRAGSNFEFDINV---IGEPIPTKEWLCNDITIIS------------------KDR 472
++V G + V + + +WL + + ++R
Sbjct: 13 PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNR 72
Query: 473 FKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-------------- 516
+V D L + D ++ D GIYT ++ + V +
Sbjct: 73 SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRV 132
Query: 517 -----LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK 571
+ CS++ + + + + T + + +N + ++ F
Sbjct: 133 GDTTQMRCSIQSTEEKR----VTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRN 188
Query: 572 --------------ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 611
I ++ ++ SD YT + + + + I + V
Sbjct: 189 RVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Score = 33.7 bits (76), Expect = 0.16
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 192 AQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ +D G YT + + + + V+
Sbjct: 208 VKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242
Score = 32.5 bits (73), Expect = 0.37
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
+ ++ +Q++D YT + V + P P
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPR 126
Score = 31.4 bits (70), Expect = 0.98
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
L ++ Q+AD G YT N ++ V + P P
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 7e-06
Identities = 94/591 (15%), Positives = 161/591 (27%), Gaps = 253/591 (42%)
Query: 2 SKLNRLINTKPAK----------PEGPL-EVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE 50
S L R + A+ + E+ ++++ L G L++
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-------------HVLVGDLIK 189
Query: 51 KDRG-LDP--EGPLEVSNIHKDGCTL-KW-NKPKDDGGEPLEGYLVEKYDPETGVWIPV- 104
L L+ + G + +W P + P + YL+ IP+
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN---TPDKDYLLS---------IPIS 237
Query: 105 ----GKT---------REPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPY 151
G + + G TPG E + +K G S+ L T + IA
Sbjct: 238 CPLIGVIQLAHYVVTAK-----LLGFTPG-ELRSYLKGAT--GHSQGLVT-AVAIA---- 284
Query: 152 SKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKD 211
S +S S VRK + +GVR A ++ + +D
Sbjct: 285 ----ETDSWESFFVS--------VRKA--ITVLFFIGVR-CYEA-YPNTSLPPSIL--ED 326
Query: 212 SVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWT 271
S+E + EG
Sbjct: 327 SLE---------------------NNEG-------------------------------V 334
Query: 272 PAGETEGP---VTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKP 328
P+ P ++ L E + V N P I N
Sbjct: 335 PS-----PMLSISNLTQEQVQD------YVNKTNSHL---PAGKQVEISLVN-------- 372
Query: 329 GTPEIKDFDTDFVELAWTPPEQNGGSPI--VGYIIE-KKEKYSPIWEKCAQTEGDTPKGK 385
+ V ++ G P G + +K K A + D +
Sbjct: 373 -GA------KNLV-VS--------GPPQSLYGLNLTLRKAK--------APSGLDQSR-- 406
Query: 386 VLDLIEGNQ----YEFRVLAVNKGGPGEPSDPTAP-HIARAKKVSPY-------INRD-- 431
I ++ + R L V +P H S IN+D
Sbjct: 407 ----IPFSERKLKFSNRFLPV-----------ASPFH-------SHLLVPASDLINKDLV 444
Query: 432 ------QLSDIKV-----RAGSNF-EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 479
DI++ GS+ ++ + + I + ++
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER-------IVDCIIRLPVK-WETTTQF 496
Query: 480 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG 530
K+T + F G SG+ L +N GT G ++ +L NP +D G
Sbjct: 497 KATHILDFGPG-GASGLGVLTHRNKDGT--GVR--VIVAGTLDINPDDDYG 542
Score = 45.4 bits (107), Expect = 7e-05
Identities = 95/575 (16%), Positives = 171/575 (29%), Gaps = 202/575 (35%)
Query: 263 MDEATGRWTPAGETEGPVT---G-LEVEGLIPNHKYKFRVRAVNKQ-GKSEPLTTTASIE 317
MD + R P+T G LE L+P + F + +Q K P T
Sbjct: 1 MDAYSTR---------PLTLSHGSLEHVLLVPTASF-FIASQLQEQFNKILPEPTEGFAA 50
Query: 318 AKNP---------F-------NQPGKPGTPE------IKDFDTDFVE-------LAWTPP 348
P F +P K G + + +F+ ++E A
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 349 EQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLD--LIEG-NQYEFRVLAVNKG 405
E + +I K + A+ P K + L + +++A+ G
Sbjct: 111 ENDTTLVKTKELI--KNYIT------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-G 161
Query: 406 GPGEPSDP---------TAPHIARAKKVSPYINR-----DQLSDIKVRAGSNFEFDINVI 451
G G D T + V I +L + A F +N++
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVL-----VGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 452 G-----EPIPTKEWL------CNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDS----G 495
P K++L C I +I + + T ++ +G + G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 496 IYT---LAVKNSWGT-DKGTAK-VTVL---GC---------SLKWNPP-------EDDGG 531
+ T +A +SW + K +TVL G SL PP E++ G
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSILEDSLENNEG 333
Query: 532 APIEYYM--VEKMETDTGKVLIKWIR-TN-----DKRVTIDNVDYFTKITI----RPLQR 579
P M + + + + ++ TN K+V I V+ + + + L
Sbjct: 334 VP--SPMLSISNLTQEQ---VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 580 SDTAQYTVTATNSQGKDQ--------------VFIEVVVTDKPSAPEGPIQWLLTLTDVT 625
+ A + G DQ F+ V ++P
Sbjct: 389 LNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFLPV------ASP-------------- 426
Query: 626 WEISNYLQELHSSLMPISLESQYLMND---KRVTIDNVDYFTKITIRPLQRSDTAQY-TV 681
HS L+ + + + D V+ + D +I + Y T
Sbjct: 427 ---------FHSHLLVPASDL--INKDLVKNNVSFNAKDI--QIPV----------YDTF 463
Query: 682 TATNSQGKDQVFIEVVVTDKPSAPEGPIQIWMSLV 716
++ + E +V P++ W +
Sbjct: 464 DGSDLRVLSGSISERIV---DCIIRLPVK-WETTT 494
Score = 30.0 bits (67), Expect = 4.0
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 45/120 (37%)
Query: 230 LKVSNVHAEGVTLDWKVPDDDGGQ---------PIE----------KYVVDKMDEATGRW 270
++V V G+T+ VP D+ G+ P +YVV+++ + TG
Sbjct: 1783 VEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 271 -------TP------AGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIE 317
AG+ L+ + N +++ + L + S+E
Sbjct: 1841 VEIVNYNVENQQYVAAGDLR----ALDTVTNVLNF---IKLQKI----DIIELQKSLSLE 1889
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 46.7 bits (110), Expect = 8e-06
Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 32/172 (18%)
Query: 552 KWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS-- 609
K + R++ D+ FT I S A + Q + +VV
Sbjct: 49 KRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
Query: 610 ----APEGPIQWL----LTLT-----------DVTWEISNYLQELHSSLMPISLESQYLM 650
+P I+ L L D WE Y H ++ + +
Sbjct: 106 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE---YPSSKHQHKKLVNRDLKTQS 162
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ + +TI + RSD YT A++ + V V + P
Sbjct: 163 GSEMKKFLST-----LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 44.8 bits (105), Expect = 3e-05
Identities = 26/208 (12%), Positives = 51/208 (24%), Gaps = 28/208 (13%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 483
++ ++ + I + D +I D K
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSK-KG 65
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME 543
+ +G+ K + + + + V+ D +P + E
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVG----YRIYDVVLSPSHGIELSVGE 121
Query: 544 TDT----------GKVLIKWIRTNDKRVTIDNVDYFTKI-------------TIRPLQRS 580
+ W + K V+ K TI + RS
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181
Query: 581 DTAQYTVTATNSQGKDQVFIEVVVTDKP 608
D YT A++ + V V + P
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 40.2 bits (93), Expect = 0.001
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 187 LGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
L + R+D G YT A + V V + P
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEG 212
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 44.1 bits (104), Expect = 1e-05
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSPI----WEKCAQTEGDTPKGKVLDLIEGNQYE 396
V++ WT Q I GY + ++ W+ +++L +G YE
Sbjct: 32 VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 397 FRVLAVNKGGPGEPSDP 413
+V G S+
Sbjct: 90 IKVRPYFNEFQGMDSES 106
Score = 41.0 bits (96), Expect = 2e-04
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 240 VTLDWKVPDDDGGQPIEKYVV----DKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYK 295
V + W V Q I+ Y V +AT W + L Y+
Sbjct: 32 VQVTWTVDRQP--QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89
Query: 296 FRVRAVNKQGK---SEPLTTT 313
+VR + + SE T
Sbjct: 90 IKVRPYFNEFQGMDSESKTVR 110
Score = 39.1 bits (91), Expect = 7e-04
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE----KYDPETGVWIP--VGKTREPEMDVTGLTPGHEYKF 125
+ W + ++GY V T W E + L G Y+
Sbjct: 33 QVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90
Query: 126 RVKALNKEGESEP 138
+V+ E +
Sbjct: 91 KVRPYFNEFQGMD 103
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 44.1 bits (104), Expect = 1e-05
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 423 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCND--ITIISKDRFKI---- 475
P I+ G + + P P + W + + + R+ +
Sbjct: 12 NGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 476 VNDDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVLG 518
+ + L + + R D IY NS+G+D ++ G
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
Score = 37.2 bits (86), Expect = 0.004
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 551 IKWIR-------TNDKRVTIDNVD----YFTKITIRPLQRSDTA-QYTVTATNSQGKDQV 598
I W R T++ + + +TI + R+D Y TA NS G D
Sbjct: 46 IAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE 105
Query: 599 FIEVVV--TDKPSAPEG 613
I + ++ G
Sbjct: 106 IIRLKEQGSEMSGPSSG 122
Score = 36.0 bits (83), Expect = 0.009
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 667 TIRPLQRSDTA-QYTVTATNSQGKDQVFIEVVV--TDKPSAPEG 707
TI + R+D Y TA NS G D I + ++ G
Sbjct: 79 TISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
Score = 34.5 bits (79), Expect = 0.027
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 187 LGVRMAQRAD-AGFYTVTAENINGKDSVEVEVIVL--DKPSPPGG 228
L + RAD Y TA N G D+ + + + P G
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 46.1 bits (108), Expect = 1e-05
Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 30/168 (17%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE---VVVTDKPSAPEGPIQ 616
R ++ N+ T + + + D +Y + + ++ VV+ P +
Sbjct: 81 RASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVH 139
Query: 617 WL------------LTLT---------DVTWEISNYLQELHSSLMPISLESQYLMNDKRV 655
+T+T +VTW E + + L ++
Sbjct: 140 VSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWF 199
Query: 656 TID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ + + + IR + +D + QG+ +
Sbjct: 200 SSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 41.1 bits (95), Expect = 6e-04
Identities = 12/114 (10%), Positives = 26/114 (22%), Gaps = 21/114 (18%)
Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------- 467
S ++ ++V G++ W
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 468 ----ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
S + + + L + +K D+G + G T+L
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248
Score = 36.8 bits (84), Expect = 0.015
Identities = 32/239 (13%), Positives = 55/239 (23%), Gaps = 69/239 (28%)
Query: 434 SDIKVRAGSNFEFD---INVIGEPIPTKEWLCNDITIIS--------------------- 469
++++V AG E P WL S
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 470 ---------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS-----WGTDKGTAKVT 515
R + N T L++ D G Y V +G D + +
Sbjct: 70 SYKESFGDFLGRASVANLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 516 VLGCSLK----WNPPED---------------DGGAPIEYY------MVEKMETDTGKVL 550
V G + + E A E ET T + L
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 551 IKWIRTNDKRVTID-----NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ + + + + IR + +D + QG+ +
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 36.8 bits (84), Expect = 0.018
Identities = 10/72 (13%), Positives = 20/72 (27%)
Query: 150 PYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENING 209
+ + L + + S + L +R A+ DAG G
Sbjct: 178 ENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237
Query: 210 KDSVEVEVIVLD 221
+ + +L
Sbjct: 238 ELDADRSSTILK 249
Score = 34.9 bits (79), Expect = 0.073
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 604 VTDKPSAPEGPIQWL-----LTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTID 658
I WL T V N+ E + S + + R ++
Sbjct: 26 YQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA 85
Query: 659 NVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIE---VVVTDKPSAPEGPIQIWMS 714
N+ T + + + D +Y + + ++ VV+ P + + +
Sbjct: 86 NLAAPT-LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTA 143
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 16/186 (8%)
Query: 240 VTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLE-----VEGLIPNHKY 294
V L W P Q + +V + RW E G L ++ +K+
Sbjct: 21 VYLTWL-PGLGNPQDVTYFVAYQSSPTRRRWREVEECAG-TKELLCSMMCLKKQDLYNKF 78
Query: 295 KFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK---DFDTDFVELAWTPPEQN 351
K RVR V+ KS + + E + + +P P + + + P
Sbjct: 79 KGRVRTVSPSSKSPWVES----EYLDYLFE-VEPAPPVLVLTQTEEILSANATYQLPPCM 133
Query: 352 GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 411
+ Y + ++ + T P L + + + S
Sbjct: 134 PPLDL-KYEVAFWKEGAGNKTLFPVTPHGQPVQITLQPAASEHHCLSARTIYTFSVPKYS 192
Query: 412 DPTAPH 417
+ P
Sbjct: 193 KFSKPT 198
Score = 32.7 bits (74), Expect = 0.25
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE-KYDPETGVWIPVGK---TREPEMDVTGL---TPGHEYK 124
L W P + + Y V + P W V + T+E + L +++K
Sbjct: 22 YLTWL-PGLGNPQDVT-YFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFK 79
Query: 125 FRVKALNKEGESEPLET 141
RV+ ++ +S +E+
Sbjct: 80 GRVRTVSPSSKSPWVES 96
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 42.9 bits (101), Expect = 2e-05
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ W R ++ ++ +D+ +TIR +Q SD Y T +N DQ + V
Sbjct: 43 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 42.1 bits (99), Expect = 4e-05
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 410 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII 468
+ P+ P + ++ VR G++ F P T W +
Sbjct: 3 LAAPSKP---------IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53
Query: 469 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
R N L + + + D+G Y N + D+GTA + V
Sbjct: 54 P-SRAMDFNGI----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 38.2 bits (89), Expect = 8e-04
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
+ +D+N L +R Q +DAG Y T N+ D + V
Sbjct: 56 RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 35.9 bits (83), Expect = 0.005
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
TIR +Q SD Y T +N DQ + V
Sbjct: 65 TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 45.5 bits (107), Expect = 2e-05
Identities = 25/210 (11%), Positives = 51/210 (24%), Gaps = 29/210 (13%)
Query: 225 PPGGPLKVSNVHAE----GVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGE---TE 277
P + +V + L W + Y ++ W
Sbjct: 1 PEDPSDLLQHVKFQSSNFENILTWDSGPEGTPDT--VYSIEYKTYGERDWVAKKGCQRIT 58
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK-DF 336
L VE Y RV AV+ G+S T + + P++
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSA----TKMTDRFSSLQH-TTLKPPDVTCIS 113
Query: 337 DTDFVELAWTPPE----QNGGSPIVGYIIEKKEKY------SPIWEKCAQTEGDTPKGKV 386
+++ P G + I Y + ++ G + +
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMH--LGGKQREYEF 171
Query: 387 LDLIEGNQYEFRVLAVNKGGP--GEPSDPT 414
L ++ ++ + P
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYMCR 201
Score = 38.5 bits (89), Expect = 0.003
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 57 PEGPLEV-SNIH----KDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGK---TR 108
PE P ++ ++ L W+ +G Y +E W+
Sbjct: 1 PEDPSDLLQHVKFQSSNFENILTWD-SGPEGTPDT-VYSIEYKTYGERDWVAKKGCQRIT 58
Query: 109 EPEMDVTGLT--PGHEYKFRVKALNKEGESEPLET 141
++T T Y RV A++ G S T
Sbjct: 59 RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMT 93
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 44.7 bits (105), Expect = 3e-05
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 17/140 (12%)
Query: 285 VEGLIPNHKYKFRVRAVNKQGK--SEPLTTTASIEAKNPFNQPGKPGTPEI----KDFDT 338
+ + Y +R + G S P + KP P +
Sbjct: 73 FQPIFLLSGYTMWIRINHSLGSLDSPPTCVL--------PDSVVKPLPPSSVKAEITINI 124
Query: 339 DFVELAWTPPEQNGGSPIVGYIIE-KKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEF 397
++++W P + + I W+ + + + Y
Sbjct: 125 GLLKISWEKPVFPEN--NLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAV 182
Query: 398 RVLAVNKGGPGEPSDPTAPH 417
+V G G S+ + P
Sbjct: 183 QVRCKRLDGLGYWSNWSNPA 202
Score = 43.5 bits (102), Expect = 8e-05
Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 200 YTVTAENINGK-DSVEVEVIVLD--KPSPPGGPLKVSNVHAEG-VTLDWKVPDDDGGQPI 255
+ + G DS V+ KP PP +K G + + W+ P
Sbjct: 84 MWIRINHSLGSLDSPPTCVLPDSVVKPLPPSS-VKAEITINIGLLKISWEKPVFPEN--N 140
Query: 256 EKYVVD-KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGK------SE 308
++ + + +W + + + Y +VR G S
Sbjct: 141 LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSN 200
Query: 309 PLTTT 313
P T
Sbjct: 201 PAYTV 205
Score = 30.0 bits (67), Expect = 2.1
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 5/97 (5%)
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
C W+ A + + + ++ + D F + +P+
Sbjct: 20 CR--WSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIF 77
Query: 579 RSDTAQYTVTATNSQGK---DQVFIEVVVTDKPSAPE 612
+ +S G + KP P
Sbjct: 78 LLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPS 114
Score = 29.7 bits (66), Expect = 2.8
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 61 LEVSNIHKDGC-TLKWNKPKDDGGEPLEGYLVE-KYDPETGVW--IPVGKTREPEMDVTG 116
++ G + W KP + + + W V + + +
Sbjct: 116 VKAEITINIGLLKISWEKPVFPENNLQ--FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPV 173
Query: 117 LTPGHEYKFRVKALNKEGES 136
Y +V+ +G
Sbjct: 174 PDLCAVYAVQVRCKRLDGLG 193
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 45.6 bits (107), Expect = 3e-05
Identities = 42/294 (14%), Positives = 72/294 (24%), Gaps = 61/294 (20%)
Query: 55 LDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLE-GYLVEKYDPETGVWIPVGKTREPEMD 113
L P + L+W D + Y V+ P+ + +
Sbjct: 12 LLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK---A 68
Query: 114 VTGLTPGHEYKFRVKALNKEGE--SEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCG 171
VT L G R N S P + +++ + N
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRL 128
Query: 172 SG---------MVRKVQHLDYNTKLGVRMAQRA--------------------------- 195
MV D L R
Sbjct: 129 RSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSK 188
Query: 196 DAGFYTVTAENINGKDSVE-----VEVIVLDKPSPPGGPLKVSNVHAE----GVTLDWKV 246
+ V + ++ + +D+ +PP NV AE +++ W+
Sbjct: 189 GRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPP------LNVTAEIEGTRMSIQWEK 242
Query: 247 PDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
P Y V + G + E +T + + KY +VRA
Sbjct: 243 PVSAFPIHCFDYEVKIHNTRNGYL----QIEKLMTNAFISIIDDLSKYDVQVRA 292
Score = 38.3 bits (88), Expect = 0.007
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 292 HKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIK--DFDTDFVELAWTPPE 349
V +K P ++ A + + P + + + + W P
Sbjct: 191 DWLAVLVNGSSKHSAIRPFDQLFALHAID------QINPPLNVTAEIEGTRMSIQWEKPV 244
Query: 350 QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 399
Y ++ + Q E + + + ++Y+ +V
Sbjct: 245 SAFPIHCFDYEVKIHNTRNGYL----QIEKLMTNAFISIIDDLSKYDVQV 290
Score = 37.2 bits (85), Expect = 0.014
Identities = 16/92 (17%), Positives = 22/92 (23%), Gaps = 7/92 (7%)
Query: 324 QPGKPGTPEIKDFDTDFVELAWTPPEQNGGSPI-VGYIIEKKEKYSPIWEKCAQTEGDTP 382
P IK V L W P + + Y ++ +E T
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-----TRITE 65
Query: 383 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 414
V L G R + N S
Sbjct: 66 SKAVTILHMGFSASVRTILQN-DHSLLASSWA 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 44.8 bits (106), Expect = 6e-05
Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ S + G + + + ++ ++S+ V+ L +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310
Query: 492 GDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP----EDDGGAPIEY 536
D G+YT + + ++ V +L + D + ++
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHPQF 359
Score = 39.8 bits (93), Expect = 0.003
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
N L + Q D G YT A +++ VE+ V +
Sbjct: 299 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
Score = 38.7 bits (90), Expect = 0.005
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 553 WIRTNDKRVTIDNVDYFTK-----ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK 607
W+ ++++V + + + +Q D YT A + + +E+ V +
Sbjct: 279 WVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNF 338
Query: 608 PSAPEGP 614
Sbjct: 339 TLHGHHD 345
Score = 36.7 bits (85), Expect = 0.019
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 651 NDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
++ V++ N + + +Q D YT A + + +E+ V +
Sbjct: 292 SNGSVSVRN----GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 43.6 bits (102), Expect = 8e-05
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 24/146 (16%)
Query: 199 FYTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDD----G 251
++V + +G+ S E +L KP+PP + V+ ++ W+ +D
Sbjct: 74 IFSVQITDQSGQYSQECGSFLLAESIKPAPPFD-VTVTFSGQYQIS--WRSDYEDPAFYM 130
Query: 252 GQPIEKYVVDKMDEATGRWTPAGETEGPVTG----LEVEGLIPNHKYKFRVRAVNKQGK- 306
+ +Y + + V L + Y+ +VRA G
Sbjct: 131 LKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSS 190
Query: 307 --------SEPLT-TTASIEAKNPFN 323
S+P+ T S E K +
Sbjct: 191 YQGTWSEWSDPVIFQTQSEELKEHHH 216
Score = 28.6 bits (63), Expect = 5.4
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 10/91 (10%)
Query: 57 PEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVE---KYDPETGVWIPVGKTREPEMD 113
P P +V+ + W +D + ++ +Y W + + +D
Sbjct: 101 PAPPFDVTVTFSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVD 160
Query: 114 VT-------GLTPGHEYKFRVKALNKEGESE 137
Y+ +V+A G S
Sbjct: 161 SRSVSLLPLEFRKDSSYELQVRAGPMPGSSY 191
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 44.5 bits (104), Expect = 8e-05
Identities = 52/424 (12%), Positives = 100/424 (23%), Gaps = 50/424 (11%)
Query: 196 DAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVTLDWKVPDDDGGQP 254
+ + +G+ + + + V P S + +TL +V GG P
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVE---GGAP 115
Query: 255 IEKYVVD-KMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTT 313
V E + PA VT V +H F R
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVT-TTVLVRRDHHGANFSCRTELDLRPQGLELFE 174
Query: 314 ASIEAKNPFNQPGKPGTPEIKDFDTDFVELAWTPP-EQNGGSPIVGYIIEKKEKYSPIWE 372
+ P++ V+ T +G P+ + +
Sbjct: 175 NTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP 234
Query: 373 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ 432
+ + ++ R+ G I S
Sbjct: 235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI-----YSFPAPNVI 289
Query: 433 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
L+ +V G+ T + +L + +
Sbjct: 290 LTKPEVSEGTEVTVKCEAHPRAKVTLNGV------------PAQPLGPRAQLLLKATPED 337
Query: 493 DSGIYT----LAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT-- 546
+ ++ L V T ++ VL P D + + T
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPM 391
Query: 547 ----G--KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFI 600
G +K ++ + I + R Y A ++QG+ +
Sbjct: 392 CQAWGNPLPELKCLKDGTFPLPIGE--------SVTVTRDLEGTYLCRARSTQGEVTREV 443
Query: 601 EVVV 604
V V
Sbjct: 444 TVNV 447
Score = 41.8 bits (97), Expect = 7e-04
Identities = 34/320 (10%), Positives = 80/320 (25%), Gaps = 39/320 (12%)
Query: 392 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 451
G + R + E + T+ V P +S + + ++
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 452 GE---PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 508
G D + + +D + D G L G
Sbjct: 214 GLFPVSEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270
Query: 509 KGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKME---TDTGKVLIKWIRTNDKRVTIDN 565
TV ++ P + E ++ + + + +
Sbjct: 271 SQETLQTV---TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR- 326
Query: 566 VDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF----IEVVVTDKPSAPEGPIQWLLTL 621
++ ++ + ++ +AT + E+ V P +
Sbjct: 327 ----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCP 377
Query: 622 TDVTWEISNYLQ---ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQ 678
+ TW ++ + + +P + + D + R
Sbjct: 378 GNWTWPENSQQTPMCQAWGNPLP-----EL-----KCLKDGTFPLPIGESVTVTRDLEGT 427
Query: 679 YTVTATNSQGKDQVFIEVVV 698
Y A ++QG+ + V V
Sbjct: 428 YLCRARSTQGEVTREVTVNV 447
Score = 38.3 bits (88), Expect = 0.009
Identities = 14/97 (14%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 423 KVSPYINRDQLS-DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 481
P ++ + S G P+P + L + + V
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV----- 420
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
R G Y +++ G V VL
Sbjct: 421 --------TRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 34.1 bits (77), Expect = 0.15
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 189 VRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
R G Y A + G+ + EV V VL
Sbjct: 417 SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 448
Score = 33.3 bits (75), Expect = 0.26
Identities = 33/292 (11%), Positives = 71/292 (24%), Gaps = 37/292 (12%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
S + + G + + + + I + K + + + S +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPML-------LGIETPLPKKELLLPGNNRKVYELSNVQE 59
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDT------- 546
G +TV + PE AP+ + + T
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTV------YWTPERVELAPLPSWQPV-GKNLTLRCQVEG 112
Query: 547 ----GKVLIKWIRTND--KRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKD---- 596
+ + +R KR T+ + A ++
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Query: 597 ----QVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELH-SSLMPISLESQYLMN 651
++ P+ P + + D + L L S + L
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 652 DKRVTIDNVDYFTKITIRPL-QRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
+ VT N + K ++ + T + T + V + P
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284
Score = 31.4 bits (70), Expect = 1.0
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVE--VEVIVLDKPSPPGGPLKVSNVH 236
D + D G +T I G S E V + P+P K
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 297
Query: 237 AEGVTL 242
VT+
Sbjct: 298 GTEVTV 303
Score = 29.5 bits (65), Expect = 4.7
Identities = 27/313 (8%), Positives = 65/313 (20%), Gaps = 65/313 (20%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIG---EPIPTKEWLCNDITIISKDRFKIVNDDKST 482
P G N V G T L + + + V +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEV 142
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKM 542
V + ++ + + V ++
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV 202
Query: 543 ETD------------TGKVLIKWIRTN---DKRVTIDNVDYFTKITIRPL-QRSDTAQYT 586
+T + + + + VT N + K ++ + T + T
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 587 VTATNSQGKDQVFIEVVVTDKPSAPEGPIQWL------LTLT-------DVTWEISNYLQ 633
+ V + P+ + +T+ VT
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322
Query: 634 ELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF 693
+ ++ ++ + ++ +AT +
Sbjct: 323 LGPRA--------------------------QLLLKATPEDNGRSFSCSATLEVAGQLIH 356
Query: 694 ----IEVVVTDKP 702
E+ V P
Sbjct: 357 KNQTRELRVLYGP 369
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 41.7 bits (98), Expect = 9e-05
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 420 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-----RFK 474
R + P I SD+ V G + G P PT EW + +
Sbjct: 4 RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 475 IVNDDKSTKLKVFDSK--RGDSGIYTLAVKNSWGTDKG-TAKVTVLG 518
++ L++ + R D G+Y +N G A + V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 28.2 bits (63), Expect = 3.6
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 641 PISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
+ + + + + +F +I R D Y A N G
Sbjct: 49 RVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 27.9 bits (62), Expect = 5.4
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Query: 551 IKWIRTNDKRVTIDNVD-------------YFTKITIRPLQRSDTAQYTVTATNSQG 594
I+W + +RV D D +F +I R D Y A N G
Sbjct: 41 IEWYK-GGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 43.2 bits (101), Expect = 1e-04
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 4/106 (3%)
Query: 199 FYTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPI 255
G+ S+ + I L KP P V A + +
Sbjct: 86 IGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVK 145
Query: 256 E-KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
+ V E L L P Y+ +VR+
Sbjct: 146 VLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKVRS 191
Score = 35.9 bits (82), Expect = 0.025
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 327 KPGTPEI----KDFDTDFVELAWTPPE-QNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
KP P + + + Q ++ + + +++
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171
Query: 382 PKGKVLDLIEGNQYEFRVLA-VNKGGPGEPSDPTAPHIAR 420
L YE +V + + G S+ + + R
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFR 211
Score = 28.2 bits (62), Expect = 7.7
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 57 PEGPLEVSNIHKDG---CTLKWNKP--KDDGGEPLEGYLVE-KYDPETGVWIPV-GKTRE 109
PE P ++S ++++G + +N + + L + V + + + W V + +
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLM-HDVAYRQEKDENKWTHVNLSSTK 171
Query: 110 PEMDVTGLTPGHEYKFRVKALNKEGES 136
+ L P Y+ +V+++
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFK 198
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 42.8 bits (100), Expect = 1e-04
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 200 YTVTAENINGKDSVEVEVIVLD---KPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIE 256
+ V ++ +++ L P P L + + + L+W +
Sbjct: 73 FVVQLQDPREPRRQATQMLKLQNLVIPWAPEN-LTLHKLSESQLELNWNNRFLN---HCL 128
Query: 257 KYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRA 300
+++V + WT + + +Y FRVR+
Sbjct: 129 EHLVQYRTDWDHSWTEQSVDYR--HKFSLPSVDGQKRYTFRVRS 170
Score = 41.3 bits (96), Expect = 4e-04
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 61 LEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPG 120
L + + + L WN + LE +LV+ W + + +
Sbjct: 105 LTLHKLSESQLELNWNNRFLN--HCLE-HLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQ 161
Query: 121 HEYKFRVKA 129
Y FRV++
Sbjct: 162 KRYTFRVRS 170
Score = 38.6 bits (89), Expect = 0.003
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 13/133 (9%)
Query: 283 LEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDFDTDFVE 342
L+ + + + +++ + + P P + +E
Sbjct: 62 LQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVI-----PWAPENLTLHKLSESQLE 116
Query: 343 LAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV--- 399
L W + + ++++ + + W + Q+ K + + +Y FRV
Sbjct: 117 LNWNNRF---LNHCLEHLVQYRTDWDHSWTE--QSVDYRHKFSLPSVDGQKRYTFRVRSR 171
Query: 400 LAVNKGGPGEPSD 412
G S+
Sbjct: 172 FNPLCGSAQHWSE 184
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 40.8 bits (95), Expect = 2e-04
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)
Query: 426 PYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTK 483
P I Q GS+ F + T W ++ + + +
Sbjct: 11 PQITV-QPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 484 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 516
L++ + + G Y + N +G+ A +T+
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 40.0 bits (94), Expect = 2e-04
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
+ + K+ GS +G PIP +W N++ + + V
Sbjct: 9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMVPYVDL 59
Query: 492 GDSGIYTLAVKNSWGT-DKGTAKVTV 516
G Y V N + D ++ +
Sbjct: 60 EHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 32.7 bits (75), Expect = 0.059
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 182 DYNTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIV 219
+ V G Y N DS +VE+I+
Sbjct: 47 ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 31.9 bits (73), Expect = 0.11
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 609
+W + N+ +T + + + + Y N + ++ D+ +
Sbjct: 35 YQWFK-NELPLTHETKKLYM---VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 30.0 bits (68), Expect = 0.63
Identities = 3/37 (8%), Positives = 10/37 (27%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
+ + Y N + ++ D+ +
Sbjct: 53 MVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 43.2 bits (102), Expect = 2e-04
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDS 489
+D+ V G E + + W+ + T+++ R +++D T L +
Sbjct: 349 ADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD--GT-LNFTNV 404
Query: 490 KRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWN 524
D+G+YT V NS G +A + V G +
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
Score = 42.4 bits (100), Expect = 4e-04
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
+ L D G YT N G + + V
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 37.8 bits (88), Expect = 0.013
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ WI N +T + + DT YT +NS G + V
Sbjct: 372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Query: 605 TDKPSAP 611
T
Sbjct: 432 TGTHHHH 438
Score = 33.6 bits (77), Expect = 0.26
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP 705
+ + DT YT +NS G + VT
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 41.6 bits (97), Expect = 3e-04
Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 491
Q+++ V+ + +WL N ++ +R + ++ L++ KR
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKR 172
Query: 492 GDSGIYTLAVKNSWGTDK-GTAKVTVL 517
D+G Y + N + + K+ ++
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 40.8 bits (95), Expect = 6e-04
Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 22/184 (11%)
Query: 432 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------- 483
+ +V +N ++ + + W + T I K+ + V +
Sbjct: 5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64
Query: 484 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIE 535
L D G+YTL + + + + + E
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124
Query: 536 YYMVE-KMETDTGKVLIKWIRTNDKRVTIDNVDYFTK----ITIRPLQRSDTAQYTVTAT 590
V ++ I+W+ N + + + ++ + I P++R D +Y +
Sbjct: 125 LDSVTLTCLSNDIGANIQWLF-NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183
Query: 591 NSQG 594
N
Sbjct: 184 NPVS 187
Score = 39.6 bits (92), Expect = 0.001
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%)
Query: 573 TIRPLQRSDTAQYTVTATNSQGK-DQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNY 631
+ + D YT+ T+ + Q + V + P + T T V S
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV----TNTTVKELDSVT 129
Query: 632 LQELHSSLMPI---SLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQG 688
L L + + SQ L +R+T+ + + + I P++R D +Y +N
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVS 187
Score = 35.8 bits (82), Expect = 0.027
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPPGGPLKVSNVHA-EGVT 241
N L +M D G YT+ + N + V V + P + + V + VT
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 242 LDWKVPD 248
L D
Sbjct: 130 LTCLSND 136
Score = 28.1 bits (62), Expect = 7.9
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIVLDKPSPP 226
++ N+ L + +R DAG Y N ++ + S +++ ++ P
Sbjct: 155 RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 40.1 bits (93), Expect = 4e-04
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 179 QHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKP 223
+ + + L + R+D G YT A + V V +KP
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 39.7 bits (92), Expect = 5e-04
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLC----------NDITIISKDRFKIVNDDKSTK 483
I++ G + E ++ + K + +
Sbjct: 16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75
Query: 484 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
L + R D G+YT A + T K + V V
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
Score = 39.0 bits (90), Expect = 7e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 608
TI + RSD YT A++ + V V +KP
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 39.0 bits (90), Expect = 7e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 702
TI + RSD YT A++ + V V +KP
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 40.7 bits (95), Expect = 4e-04
Identities = 23/186 (12%), Positives = 41/186 (22%), Gaps = 58/186 (31%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKS 481
I N F + P+ W + K+R + S
Sbjct: 3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 482 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV---------------TVLGCSLKWNPP 526
L +++ D Y + N T K V L C +
Sbjct: 62 --LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTD 119
Query: 527 EDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYT 586
V +K + + ++ T+ + A +
Sbjct: 120 ----------------------VELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFK 151
Query: 587 VTATNS 592
A N
Sbjct: 152 CKAVNR 157
Score = 38.0 bits (88), Expect = 0.003
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 21/127 (16%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLL 619
RV +D V +TI L SD +Y + + N + F+ V+ + S P
Sbjct: 52 RVYLDTVSG--SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL--EMVSKPM------- 100
Query: 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQY 679
+ WE SN L ++ + L K + + T+ + A +
Sbjct: 101 ----IYWECSNA--TLTCEVLEGTDVELKLYQGKEH----LRSLRQKTMSYQWTNLRAPF 150
Query: 680 TVTATNS 686
A N
Sbjct: 151 KCKAVNR 157
Score = 34.1 bits (78), Expect = 0.069
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 177 KVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVH 236
+V + L + +D Y + + NI + VL+ S P + SN
Sbjct: 52 RVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLY--VLEMVSKPMIYWECSNAT 109
Score = 32.2 bits (73), Expect = 0.29
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
RV +D V +TI L SD +Y + + N + F+ V+ + S P
Sbjct: 52 RVYLDTVSG--SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL--EMVSKPM 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 41.7 bits (98), Expect = 7e-04
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
+ L +D G YT N+ G + + V +
Sbjct: 406 DGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV--STAGTHHH 449
Score = 40.9 bits (96), Expect = 0.001
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 425 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDK 480
+P+I D D+ + G E P+ + +WL + T++S R ++ND
Sbjct: 352 APFI-MDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLND-- 406
Query: 481 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNP 525
L D+G+YT V N G +A + V +
Sbjct: 407 -GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450
Score = 38.6 bits (90), Expect = 0.006
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKI------TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+KW+ N ++ + + + SDT YT TN G + V
Sbjct: 382 VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
Query: 605 TDKPS 609
+ +
Sbjct: 442 STAGT 446
Score = 34.7 bits (80), Expect = 0.10
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPS 703
+ + SDT YT TN G + V+ +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 220 LDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVD-KMDEATGRWTPAGETEG 278
L P + + + W P I KY++ + + GRW A G
Sbjct: 3 LGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TIPG 58
Query: 279 PVTGLEVEGLIPNHKYKFRVRAVNKQGKSE 308
+ ++GL P Y+ ++ ++ + G E
Sbjct: 59 HLNSYTIKGLKPGVVYEGQLISIQQYGHQE 88
Score = 38.2 bits (88), Expect = 0.001
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 324 QPGKPGTPEIKDFDT--DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDT 381
P I + + + + W P+ S I YI+ + K S K A G
Sbjct: 4 GSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHL 60
Query: 382 PKGKVLDLIEGNQYEFRVLAVNKGGPGE 409
+ L G YE +++++ + G E
Sbjct: 61 NSYTIKGLKPGVVYEGQLISIQQYGHQE 88
Score = 35.6 bits (81), Expect = 0.009
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 58 EGPLEV----SNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMD 113
GP+EV + + ++WN P+ + Y++ ++ P+ V T ++
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYIL-RWRPKNSVGRWKEATIPGHLN 61
Query: 114 ---VTGLTPGHEYKFRVKALNKEGESE 137
+ GL PG Y+ ++ ++ + G E
Sbjct: 62 SYTIKGLKPGVVYEGQLISIQQYGHQE 88
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/204 (10%), Positives = 51/204 (25%), Gaps = 40/204 (19%)
Query: 436 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------KDRFKIVNDDKST---KLKV 486
V GS+ + + E + + + +R ++ + +
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 487 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNP-----PEDDG--------GAP 533
+ DSG Y V D V V ++ + P G P
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP 131
Query: 534 IEYYMVEKMETDTGKVLIKWIRTNDK---RVTIDNVDYFTKITIRPLQRSDTAQYTVTAT 590
+ W + + ++ L+ + ++
Sbjct: 132 --------------LAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Query: 591 NSQGKDQVFIEVVVTDKPSAPEGP 614
N+ K+ + + P+ P
Sbjct: 178 NAHMKELTSAIIDPLSRME-PKVP 200
Score = 35.4 bits (81), Expect = 0.039
Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 33/151 (21%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE-----GPIQWLLTLT---- 622
I +Q D+ QY D ++ V V + P + LT
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQAR 128
Query: 623 -----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
+V+W+ + +P + S + + + + ++P +
Sbjct: 129 GYPLAEVSWQNVS---------VPAN-TSHIRTPEGLYQV-----TSVLRLKP---QPSR 170
Query: 678 QYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
++ N+ K+ + + P+ P
Sbjct: 171 NFSCMFWNAHMKELTSAIIDPLSRME-PKVP 200
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 39.5 bits (91), Expect = 0.002
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 511
P W ND I + K + D+ S+ SG Y + S D
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
Score = 36.0 bits (82), Expect = 0.022
Identities = 19/176 (10%), Positives = 34/176 (19%), Gaps = 37/176 (21%)
Query: 452 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-- 509
W + I K K + + + G+Y +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDK-------KKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 510 ----GTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVL--------------- 550
G+A + K + +DD E
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138
Query: 551 ----IKWIR-----TNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 597
I W D+ D + + Y S+ +D
Sbjct: 139 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 31.8 bits (71), Expect = 0.61
Identities = 15/167 (8%), Positives = 34/167 (20%), Gaps = 30/167 (17%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK------------DQV 598
I W + + K + D + + Y + ++ K D
Sbjct: 32 ITWFK-DGKMIGFLTEDKKK-WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAK 89
Query: 599 FIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLE------------- 645
D + Y + + + L
Sbjct: 90 KDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT--TVILTCPQYPGSEILWQH 147
Query: 646 -SQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQ 691
+ + D+ D + + Y S+ +D
Sbjct: 148 NDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 38.7 bits (90), Expect = 0.002
Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 17/153 (11%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
KW N N + + I + D+ +Y + V + V
Sbjct: 37 TKWFH-NGSLSEETN----SSLNIVNAKFEDSGEYKCQHQQVNESEPV--YLEVFSDWLL 89
Query: 611 PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP 670
+ + ++ + H + Y + + + + I+I
Sbjct: 90 LQASAEVVMEGQPLFLR-------CHGWRNWDVYKVIYYKDGEALKYWYEN--HNISITN 140
Query: 671 LQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKP 702
D+ Y T Q + + + V P
Sbjct: 141 ATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 33.3 bits (76), Expect = 0.16
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIVLDKP 223
+++ N + + A D+G Y T + +S + + V+ P
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 31.8 bits (72), Expect = 0.48
Identities = 23/158 (14%), Positives = 48/158 (30%), Gaps = 20/158 (12%)
Query: 454 PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513
+ + +W N + L + ++K DSG Y + ++
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESE--PVY 80
Query: 514 VTVLGCSLKWNPPEDDG--GAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK 571
+ V L + G P+ D KV+ + + + + + +
Sbjct: 81 LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVI--YYK-DGEALKYWYEN--HN 135
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKP 608
I+I D+ Y T Q + + + V P
Sbjct: 136 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.5 bits (86), Expect = 0.002
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 24/123 (19%)
Query: 406 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTKEWL- 461
G +PT + + + V G + V G+ + PT +W
Sbjct: 4 GSSGAEEPTGVFLKKPD------------SVSVETGKDAVVVAKVNGKELPDKPTIKWFK 51
Query: 462 --CNDITIISKDRFKIVND-DKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 513
++ S RF + ++ L + GD G Y L VK D
Sbjct: 52 GKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFN 111
Query: 514 VTV 516
+ V
Sbjct: 112 IDV 114
Score = 29.8 bits (66), Expect = 1.2
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIV 219
Y +L + D G+Y + + + DS + V
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 27.5 bits (60), Expect = 6.4
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 17/111 (15%)
Query: 588 TATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQ 647
+ + GKD V + V + P+ P + W +L+ S S +
Sbjct: 21 SVSVETGKDAVVVAKV--NGKELPDKP--------TIKWFKGKWLELGSKSGARFSFKES 70
Query: 648 YLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ T+ ++ I + D Y + D + V
Sbjct: 71 HNSASNVYTV-------ELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 38.4 bits (89), Expect = 0.003
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 23/173 (13%)
Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK---I 572
LG + N P I+ E+ G L+ + K +
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWER-----GSTLVAEFKRKMKPFLKSGAFEILANGDL 63
Query: 573 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYL 632
I+ L R D+ Y VT ++ G + + + + I W ++ T
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW--ECSNATLTCE--- 118
Query: 633 QELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATN 685
+ L + + + + T+ + A + A N
Sbjct: 119 ---VLEGTDVEL--KLYQGKEHLRSLR-----QKTMSYQWTNLRAPFKCKAVN 161
Score = 35.3 bits (81), Expect = 0.034
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 12/133 (9%)
Query: 459 EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
E+ + F+I+ + LK+ + R DSG Y + V ++ GT + +
Sbjct: 41 EFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 97
Query: 519 CSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQ 578
+ P + + + V +K + + + + T+
Sbjct: 98 LEMVSKPMIYWECSNAT---LTCEVLEGTDVELKLYQ-GKEHLRSLR-----QKTMSYQW 148
Query: 579 RSDTAQYTVTATN 591
+ A + A N
Sbjct: 149 TNLRAPFKCKAVN 161
Score = 34.6 bits (79), Expect = 0.061
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQI 711
I+ L R D+ Y VT ++ G + + + + I
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW 108
Score = 33.8 bits (77), Expect = 0.11
Identities = 10/55 (18%), Positives = 19/55 (34%)
Query: 180 HLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSN 234
+ N L ++ R D+G Y VT + NG + + + +
Sbjct: 56 EILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWEC 110
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 37.6 bits (87), Expect = 0.005
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 20/127 (15%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLL 619
RV +D + + I + + D Y + + + V + S P
Sbjct: 61 RVDLDKTNGA--LRIYNVSKEDRGDYYMRMLHETEDQWKI-TMEVYEMVSKP-------- 109
Query: 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQY 679
+ WE SN L ++ + L K + + T+ + A +
Sbjct: 110 ---MIYWECSN--ATLTCEVLEGTDVELKLYQGKEH----LRSLRQKTMSYQWTNLRAPF 160
Query: 680 TVTATNS 686
A N
Sbjct: 161 KCKAVNR 167
Score = 35.2 bits (81), Expect = 0.028
Identities = 22/191 (11%), Positives = 47/191 (24%), Gaps = 64/191 (33%)
Query: 435 DIKVRAGSNFEFDINV-IGEPIPTKEWLCN-DITIIS--------------KDRFKIVND 478
++ GSN I WL + I+ KDR +
Sbjct: 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67
Query: 479 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG-----------------CSL 521
+ + L++++ + D G Y + + + + V C +
Sbjct: 68 NGA--LRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVSKPMIYWECSNATLTCEV 124
Query: 522 KWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQRSD 581
V +K + + + + T+ +
Sbjct: 125 LEGTD----------------------VELKLYQ-GKEHLRSLR-----QKTMSYQWTNL 156
Query: 582 TAQYTVTATNS 592
A + A N
Sbjct: 157 RAPFKCKAVNR 167
Score = 34.1 bits (78), Expect = 0.074
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 621 LTDVTWE--ISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQ 678
+TW + + E + ES + RV +D + + I + + D
Sbjct: 29 YQRLTWLHTTNQKILEYFPNGKKTVFESVF---KDRVDLDKTNGA--LRIYNVSKEDRGD 83
Query: 679 YTVTATNSQGKDQVFIEVVVTDKPSAPE 706
Y + + + V + S P
Sbjct: 84 YYMRMLHETEDQWKI-TMEVYEMVSKPM 110
Score = 29.5 bits (66), Expect = 2.8
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 180 HLDYNT-KLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
LD L + + D G Y + + ++ + V + S P
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVSKP 109
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 38.6 bits (88), Expect = 0.006
Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 17/241 (7%)
Query: 76 NKPKDDGGEPLEGYLVEKYDPETGVW--IPVGKTREPEMDVTGLTPGHEYKFRVKALNKE 133
GGE L L+ + E G+W + +EP+ Y R
Sbjct: 65 QYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLT 124
Query: 134 GESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQ 193
S L + + + + V+ A+
Sbjct: 125 TISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVE---CQEDSACPAAE 181
Query: 194 RADAGFYTVTAENINGKDSVEVEVIVLD--KPSPPGGPLKVSNVHAEG-VTLDWKVP--- 247
+ V A + + + D KP PP L++ + V + W+ P
Sbjct: 182 ESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKN-LQLKPLKNSRQVEVSWEYPDTW 240
Query: 248 DDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKS 307
+ V ++ T+ + I VRA ++ S
Sbjct: 241 STPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATV-----ICRKNASISVRAQDRYYSS 295
Query: 308 E 308
Sbjct: 296 S 296
Score = 37.8 bits (86), Expect = 0.009
Identities = 33/254 (12%), Positives = 71/254 (27%), Gaps = 33/254 (12%)
Query: 186 KLGVRMAQRADAGFYTVTAEN---------INGKDSVEVEVIVLDKPSPPGGPLKV---S 233
L +++ + DAG YT ++ K+ +L P + +
Sbjct: 52 TLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEA 111
Query: 234 NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPN-- 291
++ T W K D A + V G E
Sbjct: 112 KNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVEC 171
Query: 292 ------------HKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF-DT 338
+ V AV+K + ++ + +P P ++K ++
Sbjct: 172 QEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDII----KPDPPKNLQLKPLKNS 227
Query: 339 DFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 398
VE++W P +P + + + ++ + + +I
Sbjct: 228 RQVEVSWEYP-DTWSTPHSYFSLTFCVQVQGKSKRE-KKDRVFTDKTSATVICRKNASIS 285
Query: 399 VLAVNKGGPGEPSD 412
V A ++ S+
Sbjct: 286 VRAQDRYYSSSWSE 299
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.4 bits (84), Expect = 0.006
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 620 TLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQY 679
+T V WE + L + ++ + + + RV +T++ L +DT +Y
Sbjct: 33 QVTQVNWEQQDQLLAICNADLGWHISPSF---KDRVAPGPG---LGLTLQSLTVNDTGEY 86
Query: 680 TVT-ATNSQGKDQVFIEVVVTDKPSAPEGP 708
T G I + V + A G
Sbjct: 87 FCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
Score = 30.7 bits (69), Expect = 0.61
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 572 ITIRPLQRSDTAQYTVT-ATNSQGKDQVFIEVVVTDKPSAPEGP 614
+T++ L +DT +Y T G I + V + A G
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 37.8 bits (87), Expect = 0.006
Identities = 21/179 (11%), Positives = 49/179 (27%), Gaps = 21/179 (11%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 493
S + G + + G P W + ++ K+ N+ ++ L + G+
Sbjct: 9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGN 65
Query: 494 SGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDGGAPIEYYMVEKMETD------TG 547
Y + +V + S +P G + ++
Sbjct: 66 EHSYLCTATCESRKLEKGIQVEIY--SFPKDPEIHLSGPLEAGKPIT-VKCSVADVYPFD 122
Query: 548 KVLIKW------IRTNDKRVTIDNVDYFTK---ITIRPLQRSDTAQYTVTATNSQGKDQ 597
++ I +++ + D TK +T P+ A +
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 32.1 bits (72), Expect = 0.41
Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 18/154 (11%)
Query: 551 IKWIRTNDKRV--TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKP 608
W D + + N + +T+ P+ + Y TAT K + I+V + P
Sbjct: 33 FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFP 92
Query: 609 SAPEGPIQWLLTL-TDVTWEISNYLQELHSSLMPISLESQYLMNDKRVT-------IDNV 660
PE + L +T + + LE L D + D
Sbjct: 93 KDPEIHLSGPLEAGKPITVKC-----SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRK 147
Query: 661 DYFTK---ITIRPLQRSDTAQYTVTATNSQGKDQ 691
TK +T P+ A +
Sbjct: 148 SLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 28.2 bits (62), Expect = 6.8
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNV 235
KV + + L + + Y TA + K ++V + P P L
Sbjct: 45 GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLE 104
Query: 236 HAEGVTLDWKVPDDDGGQPIEKYVV 260
+ +T+ V P ++ +
Sbjct: 105 AGKPITVKCSVA---DVYPFDRLEI 126
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 36.4 bits (83), Expect = 0.006
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 223 PSPPGGP--LKVSNVHAEGVTLDWKVPDDDGGQPIE--KYVVDKMDEATGRWTPAGETE- 277
S PG P +++S + +G+ L W+ P G +E Y+ + + +
Sbjct: 5 SSGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 278 --GPVTGLEVEGLIPNHKYK---------FRVRAVNKQG 305
G T V + + FR+ A N++G
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKG 102
Score = 33.3 bits (75), Expect = 0.074
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 325 PGKPGTP-EIK-DFDTDFVELAWTPPEQNGGSPIVGYIIEKKEKYSPIWEKCAQTE---- 378
PG P ++ + D + L+W PP G I+ Y + + + + +Q
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRI 63
Query: 379 -----------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 408
+D FR+ A N+ G G
Sbjct: 64 YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 38.1 bits (88), Expect = 0.007
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 14/96 (14%)
Query: 424 VSPYI-NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 482
P + RD + S G P+P + L + + V
Sbjct: 182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVT----- 236
Query: 483 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLG 518
R G Y +++ G V VL
Sbjct: 237 --------RDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 36.6 bits (84), Expect = 0.022
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 189 VRMAQRADAGFYTVTAENINGKDSVEVEVIVL 220
R G Y A + G+ + EV V VL
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 34.6 bits (79), Expect = 0.078
Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 26/149 (17%)
Query: 468 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG----TDKGTAKVTVLGCSLKW 523
++ + +L + + + ++ + T ++ VL
Sbjct: 128 VTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY----- 182
Query: 524 NPPEDDGGAPIEYYMVEKMETDT------GKVL--IKWIRTNDKRVTIDNVDYFTKITIR 575
P D + + T G L +K ++ + I
Sbjct: 183 -GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG--------ESV 233
Query: 576 PLQRSDTAQYTVTATNSQGKDQVFIEVVV 604
+ R Y A ++QG+ + V V
Sbjct: 234 TVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 32.3 bits (73), Expect = 0.41
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 667 TIRPLQRSDTAQYTVTATNSQGKDQVFIEVVV 698
+ R Y A ++QG+ + V V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 35.9 bits (83), Expect = 0.017
Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 25/152 (16%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDK-PS 609
I+W N + +D+ +YT + D V + V+
Sbjct: 37 IQWFH-NGNLIPTHT----QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQ 91
Query: 610 APEGPIQW--LLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKIT 667
P Q + L HS ++ + N K ++D +
Sbjct: 92 TPHLEFQEGETIMLR------------CHSWKDKPLVKVTFFQNGKSQKFSHLD--PTFS 137
Query: 668 IRPLQRSDTAQYTVTATNSQGK---DQVFIEV 696
I S + Y T V I V
Sbjct: 138 IPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 29.0 bits (65), Expect = 3.7
Identities = 32/175 (18%), Positives = 48/175 (27%), Gaps = 23/175 (13%)
Query: 434 SDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 492
I V + P +W N I + + F +
Sbjct: 12 PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNN 61
Query: 493 DSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPEDDG--GAPIEYYMVEKMETDTGKVL 550
DSG YT + +D +TVL L P + G I + KV
Sbjct: 62 DSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKV- 118
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK---DQVFIEV 602
+ + N K ++D +I S + Y T V I V
Sbjct: 119 -TFFQ-NGKSQKFSHLD--PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 29.0 bits (65), Expect = 3.9
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENING-KDSVEVEVIV 219
+ + + + A + +G Y T S V + V
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 34.5 bits (79), Expect = 0.030
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 431 DQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS--------------KDRFKI 475
L + V +GSN +I+ + E W I K R ++
Sbjct: 9 GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68
Query: 476 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVL 517
D +S L + ++ D+ Y + V G + K+ VL
Sbjct: 69 --DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
Score = 32.2 bits (73), Expect = 0.19
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKPSAP 611
RV +D + I +Q+ D + Y + G +Q + I++ V D P
Sbjct: 65 RVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 32.2 bits (73), Expect = 0.19
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVF-IEVVVTDKPSAP 705
RV +D + I +Q+ D + Y + G +Q + I++ V D P
Sbjct: 65 RVRLDPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 29.9 bits (67), Expect = 0.97
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 180 HLDYNT-KLGVRMAQRADAGFYTVTAENINGK-DSVEVEVIVLDKPSPP 226
LD + L + Q+ D Y + G ++++ VLD P
Sbjct: 67 RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 35.7 bits (82), Expect = 0.031
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 424 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--- 480
+PY +Q + S E G P W +D ++S + +
Sbjct: 114 NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKL 173
Query: 481 ---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPPE 527
++ L++ + I+ + + TA++ + L P E
Sbjct: 174 FNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNE 220
Score = 34.2 bits (78), Expect = 0.093
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 36/164 (21%)
Query: 470 KDRFKIVNDDKST---KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
+ R +++ D S L++ D K D+G+Y + G D V V K N
Sbjct: 65 RQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQR 123
Query: 527 EDDGGAPIEYYMVEKMETDTGKVL-----------IKWIRTNDKRVT-------IDNVD- 567
+ L + W ++ + ++ +
Sbjct: 124 IL-----------VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK 172
Query: 568 -YFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+ T+R + + + T ++ E+V+ + P A
Sbjct: 173 LFNVTSTLR-INTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
Score = 31.5 bits (71), Expect = 0.80
Identities = 16/147 (10%), Positives = 43/147 (29%), Gaps = 27/147 (18%)
Query: 572 ITIRPLQRSDTAQYTVTATNS-QGKDQVFIEVVVTDKPSAPE----GPIQWLLTLT---- 622
+ I ++ D Y + ++ ++V P+ LT
Sbjct: 82 LQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAE 141
Query: 623 -----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
+V W ++ + ++++ + T+R + +
Sbjct: 142 GYPKAEVIW------TSSDHQVLSGKTTTTNSKREEKL------FNVTSTLR-INTTTNE 188
Query: 678 QYTVTATNSQGKDQVFIEVVVTDKPSA 704
+ T ++ E+V+ + P A
Sbjct: 189 IFYCTFRRLDPEENHTAELVIPELPLA 215
Score = 28.8 bits (64), Expect = 4.6
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 193 QRADAGFYTVTAENINGKDSVEVEVIVLDKP--SPP 226
+ T ++ +++ E+++ + P PP
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPP 218
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 35.6 bits (81), Expect = 0.035
Identities = 28/194 (14%), Positives = 54/194 (27%), Gaps = 29/194 (14%)
Query: 520 SLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
L+W + G P G L + R +D ++ + Q
Sbjct: 32 MLEWFLTDRSGARPRLASA-----EMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQV 86
Query: 580 SDTAQYT-VTATNSQGKDQVFIEVVVTDKPSAPE-----GPIQWL-----LTLT------ 622
D Y V + G + + V KP A E G + + T
Sbjct: 87 GDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNG 146
Query: 623 ----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQ 678
+TW + E+ + P + + + + + +R + A
Sbjct: 147 NPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTST---LYLRLRKDDRDAS 203
Query: 679 YTVTATNSQGKDQV 692
+ A S + +
Sbjct: 204 FHCAAHYSLPEGRH 217
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 33.4 bits (76), Expect = 0.047
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 222 KPSPPGGPLKVSNVHAEG--VTLDWKVPD--DDGGQPIEKYVVDKMDEATGRWTPAGETE 277
KP PP + V + + + W+ P D K+ + +W +
Sbjct: 7 KPDPPEN-VVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSN 65
Query: 278 GPVTGLEVEGLIPNHKYKFRVRAVNKQGK-----SEPLTTTASIE 317
G T + +Y +V A + + S T E
Sbjct: 66 G--TAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE 108
Score = 32.3 bits (73), Expect = 0.13
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 61 LEVSNIHKDGCTLKWNKP---KDDGGEPLEGYLVEKYDPE-TGVWIPVGKTREPEMDVTG 116
+ + W P D PL+ + + +Y P W V + +T
Sbjct: 16 ARPVPSNPRRLEVTWQTPSTWPDPESFPLK-FFL-RYRPLILDQWQHVELSNGTAHTITD 73
Query: 117 LTPGHEYKFRVKA 129
G EY +V A
Sbjct: 74 AYAGKEYIIQVAA 86
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 34.0 bits (77), Expect = 0.051
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 341 VELAWTPPEQN-----GGSPIVGYIIEKKEKYSPIWEKCAQTEGDTPKGKVLDLIEGNQY 395
+ ++W PP G+ + GY + K + + E T T +++ L
Sbjct: 35 IRVSWRPPVLTPTGLSNGANVTGYGVYAKGQ--RVAEVIFPTADSTAV-ELVRLRSLEAK 91
Query: 396 EFRVLAVNKGGPGEPSDPT 414
V ++ G S
Sbjct: 92 GVTVRTLSAQGESVDSAVA 110
Score = 27.4 bits (60), Expect = 9.7
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 57 PEGPLEV--SNIHKDG-CTLKWNKPKDD-----GGEPLEGYLVEKYDPETGVWIPVGKTR 108
P P +V + W P G + GY V Y V + T
Sbjct: 18 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV--YAKGQRVAEVIFPTA 75
Query: 109 EP-EMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ +++ L V+ L+ +GES
Sbjct: 76 DSTAVELVRLRSLEAKGVTVRTLSAQGESVD 106
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.5 bits (79), Expect = 0.055
Identities = 22/149 (14%), Positives = 40/149 (26%), Gaps = 19/149 (12%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+W N+ ++ + I +D+ +Y S D V +E V
Sbjct: 40 TQWFH-NESLISSQA----SSYFIDAATVNDSGEYRCQTNLSTLSDPVQLE--VHIGWLL 92
Query: 611 PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRP 670
+ P + HS + YL N K + + + I
Sbjct: 93 LQAPRWVFKEEDPIHL-------RCHSWKNTALHKVTYLQNGKDRKYFHHN--SDFHIPK 143
Query: 671 LQRSDTAQYTVTATNSQG---KDQVFIEV 696
D+ Y + V I +
Sbjct: 144 ATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 27.5 bits (61), Expect = 9.9
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 183 YNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEG--V 240
+ + A D+G Y S V++ V P V E +
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTN--LSTLSDPVQLEVHIGWLLLQAP---RWVFKEEDPI 106
Query: 241 TL 242
L
Sbjct: 107 HL 108
Score = 27.5 bits (61), Expect = 9.9
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIV 219
+ ++ +N+ + A D+G Y S V + +
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.4 bits (76), Expect = 0.077
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 544 TDTGKVLIKWIRTNDKRVTIDNVDYFT--------------KITIRPLQRSDTAQYT-VT 588
+ ++W+ + + ++ IT+ + D Y +
Sbjct: 26 SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLH 85
Query: 589 ATNSQGKDQVFIEVVVTDKPSAPEGPIQW 617
++S +V + V+ T K P W
Sbjct: 86 YSDSVSTKEVKVIVLATMKGEFCRYPSHW 114
Score = 30.3 bits (68), Expect = 0.77
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 642 ISLESQYLMNDKRVTIDNVDYFT-KITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVT 699
I L ++ + + + + IT+ + D Y + ++S +V + V+ T
Sbjct: 43 IFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLAT 102
Query: 700 DKPSAPEGP 708
K P
Sbjct: 103 MKGEFCRYP 111
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 34.3 bits (78), Expect = 0.095
Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 28/143 (19%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAP----EGPIQWLLTLT----- 622
+ I + SD+ +Y + ++ +E+ V S +G + L
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Query: 623 -----DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTA 677
+ W +N + + + P+ + L + ++ S
Sbjct: 145 WYPQPQIQW-SNNKGENIPTVEAPVVADGVGL-------------YAVAASVIMRGSSGE 190
Query: 678 QYTVTATNSQGKDQVFIEVVVTD 700
+ T +S + + + D
Sbjct: 191 GVSCTIRSSLLGLEKTASISIAD 213
Score = 30.4 bits (68), Expect = 1.4
Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 582 TAQYTVTATNSQ-----GKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNYLQELH 636
Q++V + G+D + + SA ++W+ + + +E+
Sbjct: 2 DLQFSVLGPSGPILAMVGED-ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVE 60
Query: 637 SSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEV 696
+ + +T + I + SD+ +Y + ++ +E+
Sbjct: 61 DRQSA-PYRGRTSILRDGITAGKAA----LRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115
Query: 697 VVTDKPSAPEGPIQIW 712
V S ++ +
Sbjct: 116 KVAALGSDLHVDVKGY 131
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 35.0 bits (80), Expect = 0.11
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139
+ + + + + D +G W G Y++ + + +
Sbjct: 324 SADKKVIASHPMTR-DSASGAW---------SWQGGSDLKGAFYRYAMTVYHPQSRKVE- 372
Query: 140 ETFSSIIARDPYSKYTSVSSLDSH 163
DPY+ S +S S
Sbjct: 373 ----QYEVTDPYAHSLSTNSEYSQ 392
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 33.7 bits (77), Expect = 0.13
Identities = 16/165 (9%), Positives = 35/165 (21%), Gaps = 33/165 (20%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+W N+ ++ + I D+ +Y S D V +E V
Sbjct: 40 TQWFH-NESLISSQA----SSYFIDAATVDDSGEYRCQTQLSTLSDPVQLE--VHIGWLL 92
Query: 611 PEGPIQWL-----LTLT---DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDY 662
+ P + L + + +
Sbjct: 93 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDF------------- 139
Query: 663 FTKITIRPLQRSDTAQYTVTATNSQGKDQ-VFIEVVVTDKPSAPE 706
I D+ Y +++ +T +
Sbjct: 140 ----YIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
Score = 31.4 bits (71), Expect = 0.63
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAEN-INGKDSVEVEVIVLDKPSPP 226
+ ++ +N+ + A D+G Y S V++ + +
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVS 179
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 34.8 bits (80), Expect = 0.13
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 33/139 (23%)
Query: 177 KVQHLDYNTKLGVRMAQRADA---GFYTVTAENINGKDSVEVEVI---VLDKPSPPGGPL 230
K + V + + V + +GK + VLD GPL
Sbjct: 70 KFPFISSYRAFRVPSSVDVASLVKCQLVVASFGADGKHVDVTGLQLPGVLDDMFAYTGPL 129
Query: 231 KVS------NV-----HAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP 279
++ A+GV++ D G +E ++ E+ G W+
Sbjct: 130 GAVFSEDSVSLHLWAPTAQGVSV--CFFDGPAGPALE---TVQLKESNGVWS-------- 176
Query: 280 VTGLEVEGLIPNHKYKFRV 298
+ N Y + V
Sbjct: 177 ---VTGPREWENRYYLYEV 192
Score = 32.1 bits (73), Expect = 0.90
Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 17/83 (20%)
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPL 139
G LE + GVW + Y + V +
Sbjct: 157 GPAGPALE---TVQLKESNGVW---------SVTGPREWENRYYLYEVD--VYHPTKAQV 202
Query: 140 ETFSSIIARDPYSKYTSVSSLDS 162
+A DPY++ S + +
Sbjct: 203 LK---CLAGDPYARSLSANGART 222
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 33.7 bits (76), Expect = 0.14
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 11/136 (8%)
Query: 470 KDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAVKNSWGT--DKGTAKVTVLGCSLKWNP 525
+ RF+++ D + L + D++ D+G Y V+ K+ + +L P
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 526 PEDDGGAPIEYYMVEKMETDTG------KVLIKWIRTNDKRVTIDNVDYFTKITIRPLQR 579
+ G + W N +++T+ P
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTG-NALSPLDPETTRSSELTLTPRPE 186
Query: 580 SDTAQYTVTATNSQGK 595
T +
Sbjct: 187 DHGTNLTCQMKRQGAQ 202
Score = 30.2 bits (67), Expect = 2.0
Identities = 11/120 (9%), Positives = 28/120 (23%), Gaps = 3/120 (2%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVTWEISNY 631
++I + DT Y + + + + + +A + L +
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD-IHFLEPLESGRPTR 142
Query: 632 LQELHSSLMPISLESQY--LMNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
L + N +++T+ P T +
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQ 202
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 33.8 bits (78), Expect = 0.23
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
Query: 86 LEGYLVEKYDPETGVWIPVGKTREPEMDV--TGLTPGHEYKFRVKALNKEGESEPLET 141
LEGY D E W + +R V + L G Y+F VKA N +G+ P+ T
Sbjct: 730 LEGY-----DKE---WYYLTDSRT----VSYSNLPQGT-YQFLVKAANSDGKWNPIPT 774
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 33.5 bits (77), Expect = 0.27
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 15/58 (25%)
Query: 86 LEGYLVEKYDPETGVWIPVGKTREPEMDV--TGLTPGHEYKFRVKALNKEGESEPLET 141
L+G + W + + V + PG Y+F VKA + T
Sbjct: 724 LKGL-----ENS---WYTINEQNS----VTFRNIPPGK-YEFLVKARLHNQDWSEDTT 768
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 32.4 bits (73), Expect = 0.38
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 72 TLKWNKPKDDGGEPLEGYLVE--KYDPETGVWIPV-GKTREPEMDVTGLT--PGHEYKFR 126
+ W + P+ + VE Y + WI +++ P + R
Sbjct: 28 IVYWE-YQIMPQVPV--FTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVR 84
Query: 127 VKALNKEGESEPLET 141
VKA + ES ++
Sbjct: 85 VKARVGQKESAYAKS 99
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 31.1 bits (71), Expect = 0.44
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 470 KDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTV 516
+ RF + + K+ L + + DS Y A TDK GT +VTV
Sbjct: 62 QGRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGT-RVTV 114
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 32.3 bits (74), Expect = 0.57
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 86 LEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLET 141
LEG D E W + + + + L+ G+ Y+ + L ++G+
Sbjct: 695 LEGM-----DKE---WNFLK-SNINRITYSNLSYGN-YQLIISKLERDGQPSNRPH 740
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.1 bits (67), Expect = 0.62
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 453 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 509
P W ND I + K + D+ S+ SG Y + S D
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 30.3 bits (69), Expect = 0.74
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 470 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTVL 517
R K D + + L + D++ DSG Y A + S G+ + GT ++TV+
Sbjct: 56 NGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEASSGSWQLIFGSGT-QLTVM 110
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 31.2 bits (70), Expect = 0.81
Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 36/193 (18%)
Query: 516 VLGCSLKWNPPEDDGGAPIEYYMVEKMET------DTGKVLIKWIRTNDKRVTIDNVDYF 569
L C L+ E + + + + + G + R +
Sbjct: 18 TLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRD 77
Query: 570 TKITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVTDKPSAPEGPIQ------WLLTLT 622
+ + L+ D YT + T QG V I + V KP + +
Sbjct: 78 ASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 137
Query: 623 ----------DVTWEISNYLQELHSSLMPISLESQYLMNDKRVTIDNVDYFTKITIRPLQ 672
+TW L + + VT+ ++ + P
Sbjct: 138 CVSTGGRPPAQITWHSD--LGGMPQT------SQVPGFLSGTVTVTSL-----WILVPSS 184
Query: 673 RSDTAQYTVTATN 685
+ D Q T +
Sbjct: 185 QVDGKQVTCKVEH 197
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 31.3 bits (70), Expect = 0.81
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 290 PNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQP---GKPGTPEIKDFDTD------F 340
Y RV + + + +P P G P I+ F+
Sbjct: 67 VKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNLGQPTIQSFEQVGTKVNVT 126
Query: 341 VELAWTPPEQNGGSPIVGYIIEKKEKYSP-IWEKCAQTEGDTPKGK 385
VE T +N + + K Y+ W+ +Q +G+ GK
Sbjct: 127 VEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGK 172
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 31.8 bits (72), Expect = 0.94
Identities = 20/152 (13%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 208 NGKDSVEVEVIVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEAT 267
G ++++ I L + G V + + + G Y D + AT
Sbjct: 10 YGSNNLQFSKIELAMETTSGYNDMVKYHELAKIKVKFNQWSGTSGDTYNVYF-DGVKVAT 68
Query: 268 GRWTPAGETEGPVTGLEVEGLIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGK 327
G T + T Y+ + A + G S+ +I + +
Sbjct: 69 GAITGSQTTASF-------EYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLKPL 121
Query: 328 PGTPEIKDFDTDFVELAWTPPEQNGGSPIVGY 359
V+ + + Y
Sbjct: 122 TMN----------VDPNNKSYNTDPSIVMGTY 143
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 31.1 bits (71), Expect = 1.1
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
GG +L VE Y+ T W V
Sbjct: 213 GGFDGTAHLSSVEAYNIRTDSWTTVT 238
Score = 29.9 bits (68), Expect = 2.4
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
G L +E YDP W V
Sbjct: 260 AGYDGNSLLSSIECYDPIIDSWEVVT 285
Score = 28.8 bits (65), Expect = 5.4
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 81 DGGEPLEGYLVEKYDPETGVWIPV 104
DG L VEKYDP TG W V
Sbjct: 169 DGLNILN--SVEKYDPHTGHWTNV 190
Score = 28.4 bits (64), Expect = 8.8
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 91 VEKYDPETGVWIPV 104
+E+YDP W +
Sbjct: 130 MERYDPNIDQWSML 143
Score = 28.4 bits (64), Expect = 8.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 91 VEKYDPETGVWIPVGKTREP 110
VEKYDP+T W +
Sbjct: 33 VEKYDPKTQEWSFLPSITRK 52
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 22/85 (25%)
Query: 79 KDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ G + ++K D G W ++ V+G Y ++V
Sbjct: 345 NSEKGSITKQLEMQKSD--NGTW---------KLQVSGNLENWYYLYQVTVNGT------ 387
Query: 139 LETFSSIIARDPYSKYTSVSSLDSH 163
+ A DPY++ SV++
Sbjct: 388 -----TQTAVDPYARAISVNATRGM 407
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 31.3 bits (70), Expect = 1.2
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 221 DKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGP- 279
+KP+ P ++ + G+ L W+ + + Y V K + G + G
Sbjct: 533 EKPAAPNVNVRQYDPDPSGIQLVWEKQSN-----VHHYRVYKETKHGKELI--GTSAGDR 585
Query: 280 --VTGLEVEGLIPNHKYKFRVRAVNKQGK-SEPLTTT 313
+ GL E + + + A+++ S+
Sbjct: 586 IYLEGLVEES--KQNDVRLHIEALSETFVPSDARMID 620
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.4 bits (66), Expect = 1.3
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 459 EWLCNDITIISKDRFK--IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
E+ N I + FK + ++ + L + + ++ D G Y + V ++ + V
Sbjct: 48 EYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRV-LRETENELKITLEV 106
Query: 517 L 517
Sbjct: 107 F 107
Score = 27.9 bits (62), Expect = 5.0
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 606
RV ++ + + I +++ D Y + + + V D
Sbjct: 65 RVYLEENNGA--LHISNVRKEDKGTYYMRVLRETENELKIT-LEVFD 108
Score = 27.9 bits (62), Expect = 5.0
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTD 700
RV ++ + + I +++ D Y + + + V D
Sbjct: 65 RVYLEENNGA--LHISNVRKEDKGTYYMRVLRETENELKIT-LEVFD 108
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 31.1 bits (70), Expect = 1.3
Identities = 28/132 (21%), Positives = 39/132 (29%), Gaps = 24/132 (18%)
Query: 30 TLKWNKPKDDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGY 89
L W P+D + Y I G L +D P + Y
Sbjct: 54 VLVWKAPEDTRK--IVDY-----------------QIFSAGKLLGKASDNNDNFSPAKPY 94
Query: 90 LVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARD 149
+ Y + + K V GL P Y+F VKA +G S I
Sbjct: 95 IDHFYVNDKDNF--QHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSV---ASKPITAK 149
Query: 150 PYSKYTSVSSLD 161
+K V+ D
Sbjct: 150 TSAKPQIVNVRD 161
Score = 29.2 bits (65), Expect = 6.1
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 234 NVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEGLIPNHK 293
+ + G L ++D P + Y+ + + + + V GL P
Sbjct: 70 QIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNF----QHKIVMQNFTVIGLKPETS 125
Query: 294 YKFRVRAVNKQGKSEPLTTTASIEAKNPFNQPGKPGTPEIKDF---------DTDFVELA 344
Y+F V+A G + KP ++DF +T ++ A
Sbjct: 126 YQFTVKAQYADGSLSVASKPI------TAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQA 179
Query: 345 W 345
Sbjct: 180 I 180
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 30.8 bits (70), Expect = 1.4
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
GG+ G L VE YD + W V
Sbjct: 207 GGQNGLGGLDNVEYYDIKLNEWKMVS 232
Score = 30.8 bits (70), Expect = 1.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVGKTREPEMDVTGLT 118
G G L + +Y+ ET W+ K R + +
Sbjct: 254 AGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLIC 292
Score = 30.4 bits (69), Expect = 2.1
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPV 104
+ G L L E YD T W
Sbjct: 111 EVGNSALY--LFECYDTRTESWHTK 133
Score = 30.0 bits (68), Expect = 2.7
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 82 GGEPLEGYLVEKYDPETGVWIPVGKTREP 110
GG + ++P+ W + E
Sbjct: 19 GGSQPQS--CRYFNPKDYSWTDIRCPFEK 45
Score = 29.2 bits (66), Expect = 5.0
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 81 DGGEPLEGYL--VEKYDPETGVWIPV 104
G L E YDP T W +
Sbjct: 159 LGNNVSGRVLNSCEVYDPATETWTEL 184
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/26 (38%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
GG VE YDP T W V
Sbjct: 211 GGHDGPLVRKSVEVYDPTTNAWRQVA 236
Score = 29.5 bits (67), Expect = 4.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
GG+ L VE Y+P T W V
Sbjct: 258 GGDDGSCNLASVEYYNPTTDKWTVVS 283
Score = 28.8 bits (65), Expect = 5.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPV 104
GG L VE Y+ ++ W V
Sbjct: 115 GGFDGSTGLSSVEAYNIKSNEWFHV 139
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 30.8 bits (70), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPV 104
GG +G VE +D +T W +
Sbjct: 213 GGVTEDGLSASVEAFDLKTNKWEVM 237
Score = 28.5 bits (64), Expect = 7.7
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 79 KDDGGEPLEGYLVEKYDPETGVWIPV 104
K D + V Y+P+ G W +
Sbjct: 167 KTDDKKCTN--RVFIYNPKKGDWKDL 190
Score = 28.5 bits (64), Expect = 8.6
Identities = 6/14 (42%), Positives = 6/14 (42%)
Query: 91 VEKYDPETGVWIPV 104
V YDP W V
Sbjct: 129 VLCYDPVAAKWSEV 142
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 470 KDRFKIVNDDKSTK--LKVFDSKRGDSGIYTLAV----KNSWGTDKGTAKVTV 516
+ R +++ + L + D K DSG Y N W KGT VTV
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGT-TVTV 116
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVG 105
GG + L VE+YD ET W V
Sbjct: 222 GGYDGQDQLNSVERYDVETETWTFVA 247
Score = 30.0 bits (68), Expect = 2.7
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPVGKTREP 110
GG +L VE YDP+T W V +
Sbjct: 269 GGYDGHTFLDSVECYDPDTDTWSEVTRMTSG 299
Score = 28.8 bits (65), Expect = 5.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 82 GGEPLEGYL--VEKYDPETGVWIPV 104
GG + VE+Y+PE W V
Sbjct: 128 GGSHGCIHHNSVERYEPERDEWHLV 152
Score = 28.5 bits (64), Expect = 7.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 91 VEKYDPETGVWIPVGKTREP 110
+E Y+P G W+ + + P
Sbjct: 41 LEAYNPSNGTWLRLADLQVP 60
Score = 28.1 bits (63), Expect = 9.8
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 81 DGGEPLEGYLVEKYDPETGVWIPV 104
DG L E Y PE W +
Sbjct: 178 DGTNRLN--SAECYYPERNEWRMI 199
>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB:
2e8z_A* 2e9b_A*
Length = 718
Score = 30.8 bits (70), Expect = 2.1
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 25/84 (29%)
Query: 79 KDDGGEPLEGYLVEKYDPETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEP 138
+ G + + E GV+ + VTG G+EY F + SE
Sbjct: 134 PNKSGRTFQ--MTRL---EKGVY---------AVTVTGDLHGYEYLFCI-----CNNSEW 174
Query: 139 LETFSSIIARDPYSKYTSVSSLDS 162
+ET D Y+K +V+
Sbjct: 175 METV------DQYAKAVTVNGEKG 192
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 30.0 bits (68), Expect = 2.3
Identities = 4/14 (28%), Positives = 4/14 (28%)
Query: 91 VEKYDPETGVWIPV 104
E Y W P
Sbjct: 214 AEVYSITDNKWAPF 227
Score = 28.1 bits (63), Expect = 9.9
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 80 DDGGEPLEGYLVEKYDPETGVWIPV 104
DG L+ V YD + W
Sbjct: 110 KDGERCLD--SVMCYDRLSFKWGES 132
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 29.6 bits (66), Expect = 2.3
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 176 RKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPP 226
K + + L + + D G Y + +L +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI 111
Score = 28.0 bits (62), Expect = 7.2
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 612
+ + L+ DT Y + + + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ 112
Score = 28.0 bits (62), Expect = 7.2
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPE 706
+ + L+ DT Y + + + + +
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ 112
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 28.5 bits (63), Expect = 2.9
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 55 LDPEGPLEVS-NIHKDGCTLKWNKPKDDGGEPLEGYLVE-----KYDPE--TGVWIPVGK 106
+P P V+ + C ++W +P+ + + K + I V
Sbjct: 18 FNP--PSNVTVRCNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSG 75
Query: 107 TREPEMDVTGLTPGHEYKFRVKA 129
E + P ++ +++A
Sbjct: 76 DLENRYNFPSSEPRAKHSVKIRA 98
>4f0q_A Restriction endonuclease; cytosine methylation-dependent
endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB:
4f0p_A
Length = 456
Score = 29.5 bits (65), Expect = 3.7
Identities = 34/259 (13%), Positives = 82/259 (31%), Gaps = 11/259 (4%)
Query: 38 DDGGEPLEGYLVEKDRGLDPEGPLEVSNIHKDGCTLKWNKPKDDGGEPLEGYLVEKYDPE 97
GG L ++E G++ + + + + P G E +++D +
Sbjct: 53 SPGGLGLPKVMLEA--GINAPAEVVGPDRSRRALIAIRSSPWKAGHE--TNPWHDEFDLD 108
Query: 98 TGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSV 157
G G + + + G T G+ L+ E + + + +
Sbjct: 109 HGHVRYFGDHKPSTVGLPGETKGNRLLLEAARLHAGTTREERLLAPPLFLFRAVTVHRAG 168
Query: 158 SSLDSHKRSNQPCGSGMVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEV 217
++ K + CG+ ++ +++H+ R ++ ++G + V+
Sbjct: 169 RAV--VKGHVEFCGAAIIERLEHVVQRDPETGRSFPN-----LSLDLAVVSGGEIDGVDF 221
Query: 218 IVLDKPSPPGGPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETE 277
+D + HA + W I + V+ +++ PA +
Sbjct: 222 RWIDDRRNAALAAGETLRHAPESWIRWVRQGRLAIPGIRRRVLASAVQSSKEQQPASGSA 281
Query: 278 GPVTGLEVEGLIPNHKYKF 296
T + K+ F
Sbjct: 282 EAATLQTLYKFYDGRKHAF 300
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 560 RVTI--DNVDYFTKITIRPLQRSDTAQYT-VTATNSQGKDQVF--IEVVVTDKPSA 610
R+ + + ++ + LQ D+ Y V + +F I +VVT S
Sbjct: 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSG 119
Score = 28.3 bits (63), Expect = 3.8
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 654 RVTI--DNVDYFTKITIRPLQRSDTAQYT-VTATNSQGKDQVF--IEVVVTDKPSA 704
R+ + + ++ + LQ D+ Y V + +F I +VVT S
Sbjct: 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGFSG 119
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.9 bits (66), Expect = 4.4
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 5/124 (4%)
Query: 114 VTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYTSVSSLDSHKRSNQPCGSG 173
+TGL P +Y V N+ + + + YT+ S ++ ++
Sbjct: 1072 LTGLKPNTKYAVYVGVDNRSNAKASITVNTG---EKEVTTYTNKSLALNYVKAYAHNTRR 1128
Query: 174 MVRKVQHLDYNTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVI--VLDKPSPPGGPLK 231
V Y + +D T+T G ++ + I + S G
Sbjct: 1129 NNATVDDTSYFQNMYAFFTTGSDVSNVTLTLSREAGDEATYFDEIRTFENNSSMYGDKHD 1188
Query: 232 VSNV 235
Sbjct: 1189 TGKG 1192
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 29.3 bits (65), Expect = 4.4
Identities = 12/118 (10%), Positives = 37/118 (31%), Gaps = 12/118 (10%)
Query: 517 LGCSLKWNPPEDDGGAPIEYYMVEKMETDTGKVLIKWIRTNDKRVTIDNVDYFTK----- 571
+ C++ ++ P + I ++ K + + D + +
Sbjct: 23 IFCNIFYSQPLNITSMGITWFWKSL---TFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKS 79
Query: 572 ----ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGPIQWLLTLTDVT 625
+ + +Q + +Y + K Q +++ V P++ Q + +
Sbjct: 80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDK 137
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 27.9 bits (62), Expect = 4.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 572 ITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVTDKP 608
+ + L+ D YT + T QG V I + V KP
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 27.9 bits (62), Expect = 4.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 666 ITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVTDKP 702
+ + L+ D YT + T QG V I + V KP
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 28.7 bits (63), Expect = 4.5
Identities = 13/154 (8%), Positives = 39/154 (25%), Gaps = 19/154 (12%)
Query: 551 IKWIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSA 610
+KW + N + + + + + D+ Y S ++++ V A
Sbjct: 29 LKWEK-NGQELPQKHDKHLVLQDFSEV--EDSGYYVCYTPASNKNTYLYLKARVGSADDA 85
Query: 611 PEGPIQWLLTLTDVTWEISNYLQELHSSLMPISLES---------------QYLMNDKRV 655
+ + D + + + + + ++L + +
Sbjct: 86 KKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSII 145
Query: 656 TIDNVDYFTKITIRPLQRSDTAQYTVTATNSQGK 689
+ N T + + Y
Sbjct: 146 SPLNATKNT-WNLGNNAKDPRGTYQCQGAKETSN 178
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.0 bits (63), Expect = 4.6
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 469 SKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTV 516
+ + S L + ++ DS +Y A++ +G GT ++V
Sbjct: 59 TVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGT-LLSV 114
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 28.9 bits (64), Expect = 4.9
Identities = 22/132 (16%), Positives = 44/132 (33%), Gaps = 7/132 (5%)
Query: 469 SKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
R+ S + S+ DS +Y A+ + TDK G L+ P
Sbjct: 62 ISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFG---TGTRLQVFPN 118
Query: 527 EDDGGAPIEYYMVEKMETDTGKVLIK-WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQY 585
+ P Y + + +D L + + + D+ Y T + ++ D
Sbjct: 119 IQN-PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSN 177
Query: 586 TVTATNSQGKDQ 597
+ A +++
Sbjct: 178 SAVAWSNKSDFA 189
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 29.1 bits (65), Expect = 5.3
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 470 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTVLGCSLK 522
+ T+L++ + T+ +G+ K+TVL
Sbjct: 62 PGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGS-KLTVLEDLKN 120
Query: 523 WNPP 526
PP
Sbjct: 121 VFPP 124
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 27.7 bits (62), Expect = 5.4
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 467 IISKD-RFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------------KG 510
ISK R+ + KS L++ D D G Y + + G G
Sbjct: 48 SISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDG 107
Query: 511 TAKVTV 516
T VTV
Sbjct: 108 T-AVTV 112
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 28.2 bits (62), Expect = 5.6
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 556 TNDKRVTIDNVDYFT-KITIRPLQRSDTAQYT-VTATNSQGKDQVFIEVVVTDKPSAP 611
D R+ + I+I + +D +YT T + + V+ P P
Sbjct: 88 LRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLG--IPQKP 143
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 28.4 bits (63), Expect = 5.6
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 560 RVTIDNVDYFTKITIRPLQRSDTAQYT-----VTATNSQGKDQVFIEVVVTDKPSAPEGP 614
R D + + I I L+ SD Y + + + + V P
Sbjct: 56 RTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSIS 114
Query: 615 I 615
Sbjct: 115 D 115
Score = 28.4 bits (63), Expect = 5.6
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 654 RVTIDNVDYFTKITIRPLQRSDTAQYT-----VTATNSQGKDQVFIEVVVTDKPSAPEGP 708
R D + + I I L+ SD Y + + + + V P
Sbjct: 56 RTIFDITNNLS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSIS 114
Query: 709 I 709
Sbjct: 115 D 115
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.8 bits (62), Expect = 5.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 470 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 516
K+R I D++ + + D + D+GIY + G D KVTV
Sbjct: 60 KNRVSI-RDNQRDFIFTVTMEDLRMSDAGIYWCGIT-KGGLDPMF-KVTV 106
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.8 bits (61), Expect = 6.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 586 TVTATNSQGKDQVFIEVVVTDKPSA 610
+V A N+ G D+ + V V+ S
Sbjct: 99 SVRAENTAGHDEAVLFVQVSGPSSG 123
Score = 27.8 bits (61), Expect = 6.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 680 TVTATNSQGKDQVFIEVVVTDKPSA 704
+V A N+ G D+ + V V+ S
Sbjct: 99 SVRAENTAGHDEAVLFVQVSGPSSG 123
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics,
center for structural genomics of infectious diseases,
unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella
enterica subsp}
Length = 618
Score = 28.8 bits (65), Expect = 6.6
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 23/59 (38%)
Query: 97 ETGVWIPVGKTREPEMDVTGLTPGHEYKFRVKALNKEGESEPLETFSSIIARDPYSKYT 155
G + +DV G+TPG EY F + +G P DP S+
Sbjct: 71 GDGWF---------TLDVAGVTPGTEYNFVL----SDGMVVP----------DPASRAQ 106
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.7 bits (62), Expect = 7.4
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 469 SKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTV 516
+ + S L + ++ DS +Y A++ +G GT ++V
Sbjct: 59 TVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGT-LLSV 114
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 27.2 bits (60), Expect = 7.6
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 463 NDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNS-WGTD-KGTAKVTV 516
++T R+++ D L + + D G Y ++ D K K+ +
Sbjct: 51 RNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 27.5 bits (61), Expect = 8.3
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 470 KDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 517
K R ++D + + V + + D G Y VK + G + VL
Sbjct: 74 KGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 26.8 bits (59), Expect = 8.6
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 228 GPLKVSNVHAEGVTLDWKVPDDDGGQPIEKYVVDKMDEATGRWTPAGETEGPVTGLEVEG 287
GP K + + TLD DD I Y+ +K G + G
Sbjct: 12 GPDKELTLPVDSTTLDGSKSSDDQK--IISYLWEKTQGPDGVQLENANSSVATVTGLQVG 69
Query: 288 LIPNHKYKFRVRAVNKQGKSEPLTTTASIEAKNP 321
Y F + +++ + ++ ++
Sbjct: 70 -----TYVFTLTVKDERNLQSQSSVNVIVKEESG 98
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 28.5 bits (62), Expect = 9.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 184 NTKLGVRMAQRADAGFYTVTAENINGKDSVEVEVIVLDKPSPPGGP 229
N L + + D+G YT++ +I V+++ +P+P P
Sbjct: 104 NRSLVIHGVRETDSGLYTLSVGDIKDPARQVASVVLVVQPAPVPTP 149
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.1 bits (62), Expect = 9.5
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 6/132 (4%)
Query: 469 SKDRFK--IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLGCSLKWNPP 526
S R+ + D K + L + S+ DS Y V + T ++ + P
Sbjct: 60 SNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGST---LGRLYFGRGTQLTVWP 116
Query: 527 EDDGGAPIEYYMVEKMETDTGKVLIK-WIRTNDKRVTIDNVDYFTKITIRPLQRSDTAQY 585
+ P Y + + +D L + + + D+ Y T + ++ D
Sbjct: 117 DIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSN 176
Query: 586 TVTATNSQGKDQ 597
+ A +++
Sbjct: 177 SAVAWSNKSDFA 188
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 27.2 bits (60), Expect = 9.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 572 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 614
+ I+ ++ SD YT + +++ +E+ V D P P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED-PFYWINP 128
Score = 27.2 bits (60), Expect = 9.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 666 ITIRPLQRSDTAQYTVTATNSQGKDQVFIEVVVTDKPSAPEGP 708
+ I+ ++ SD YT + +++ +E+ V D P P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED-PFYWINP 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.134 0.400
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,156,852
Number of extensions: 702408
Number of successful extensions: 3856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2863
Number of HSP's successfully gapped: 1566
Length of query: 716
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 616
Effective length of database: 3,909,693
Effective search space: 2408370888
Effective search space used: 2408370888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (27.7 bits)