BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7042
(2245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 244 bits (622), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 157/231 (67%), Gaps = 5/231 (2%)
Query: 670 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAI 729
P+PP+FP +E+I +++ L W+ P DGGS +TNY +EKRE SW +R+T I
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 730 TGLSPGHQYEFRVYAENVYGRSDPST-TSDLITTKDTFKKQIKKRQYDFDETGKKIRGKA 788
GL G QYEFR+ AEN +G+S P T+ ++ D K+ +R YD DE GK +RGK
Sbjct: 70 EGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKR---RRGYDVDEQGKIVRGKG 126
Query: 789 DEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIF 848
S+YD YVFDI+ +Y PQPV+IK V DHYDI EE+GTGAFGVVHR ER TGN F
Sbjct: 127 TVS-SNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNF 185
Query: 849 AAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
AAKF+ H +KE +RKEI M+ L HP L+NLHDAFEDD+EMV+I+E +
Sbjct: 186 AAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 1228 VDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS 1287
V +P PP+ P+ + +I E+ LSWKPP DGGS +TNY +EK E+ G WS + R
Sbjct: 7 VPEPEPPRFPI-IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK-SRY 64
Query: 1288 PAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1318
+ GL +QY FR+ AEN++G S+P E
Sbjct: 65 TYTTIEGLRAGKQYEFRIIAENKHGQSKPCE 95
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 902 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 961
P PP + +++ L W PP +GGS +TNY +EK++ W+ + T +
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYT-YTT 68
Query: 962 VRNLAIGSTYEFRVMAENQYGLSKPALTIDPI 993
+ L G YEFR++AEN++G SKP P+
Sbjct: 69 IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV 100
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 377 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 436
+P PP P++ + + V LSW P DGGS + Y I+K E +W + CA S+
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW-----SPCAKSR 63
Query: 437 ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 472
I L G+QYEFR+ A+N+ G S P + V I
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 1984 KPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQ 2043
+P PP P++ + + V LSW P DGGS + Y I+K E +W + CA S+
Sbjct: 9 EPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW-----SPCAKSR 63
Query: 2044 ---INIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 2079
I L G+QYEFR+ A+N+ G S P + V I
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 345
+ I L W PP DGG VT+Y +E+R+ W + + + T I +GL G+
Sbjct: 18 IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI-EGLRAGK 76
Query: 346 EYLFHVMAVNENGMGPPLEGINPI 369
+Y F ++A N++G P E P+
Sbjct: 77 QYEFRIIAENKHGQSKPCEPTAPV 100
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 1952
+ I L W PP DGG VT+Y +E+R+ W + + + T I +GL G+
Sbjct: 18 IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI-EGLRAGK 76
Query: 1953 EYLFHVMAVNENGMGPPLEGINPI 1976
+Y F ++A N++G P E P+
Sbjct: 77 QYEFRIIAENKHGQSKPCEPTAPV 100
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 540
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 541 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM 571
N V G D EY RA N G TK E++ +
Sbjct: 543 NRVKGDDKGEYTVRAKNSYG---TKEEIVFL 570
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 2147
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 542
Query: 2148 NSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178
N V G D EY RA N G TK E++ +
Sbjct: 543 NRVKGDDKGEYTVRAKNSYG---TKEEIVFL 570
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVK 81
Y IE+RE G W C + + L G YEFRIIA N G+S+P T PV
Sbjct: 44 YTIEKREAMGGSWSPCAKSRYTYTT--IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVL 101
Query: 82 I 82
I
Sbjct: 102 I 102
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+P FIV V G+ C + P W ++ RE+ +Y G + L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 150 FNEVTDVDNGDYTCEAYNSVG 170
N V D G+YT A NS G
Sbjct: 542 INRVKGDDKGEYTVRAKNSYG 562
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+P FIV V G+ C + P W ++ RE+ +Y G + L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 1757 FNEVTDVDNGDYTCEAYNSVG 1777
N V D G+YT A NS G
Sbjct: 542 INRVKGDDKGEYTVRAKNSYG 562
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 1633 EREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKI 1689
+RE G W C + + L G YEFRIIA N G+S+P T PV I
Sbjct: 48 KREAMGGSWSPCAKSRYTYTT--IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLI 102
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 79/203 (38%), Gaps = 22/203 (10%)
Query: 1332 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTG---------ELPTTIW 1382
P+PP P I + L W P DGGS + Y + + G T
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 1383 SKIRPTSSTVYCKDTTMNSSNSEPGKQSGPVIV--EEQPNKPVMDLSGVRDITVKAG--- 1437
+R + S+P + + PV++ +E+ + D+ I G
Sbjct: 70 EGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVS 129
Query: 1438 ---EDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQY 1494
+++ + +PQP +D ++D D +H++L + +V + ++R+ G +
Sbjct: 130 SNYDNYVFDIWKQYYPQPVE--IKHDHVLDHYD--IHEELGTGAFGVVHRVTERATGNNF 185
Query: 1495 RLQ-LKNPAGFDTATLHSRLRTL 1516
+ + P D T+ ++T+
Sbjct: 186 AAKFVMTPHESDKETVRKEIQTM 208
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 34/115 (29%)
Query: 1002 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSL 1061
P P P + ++++ L W P DGGS + Y +EKR W P
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW-------SPCAKS 62
Query: 1062 KYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQ 1116
+Y EG G +YEFR+ A N GQ
Sbjct: 63 RYTYTTIEGLRAGK---------------------------QYEFRIIAENKHGQ 90
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 151/308 (49%), Gaps = 10/308 (3%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 534
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD--KGE 592
+ LII SV DA Y RA N+GG S A L + K ++P +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 593 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 651
V +KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 652 ENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH 711
+N G+D V++ ++D PDPP+ V D+ DS+ L W P DGGS ITNYIVEK
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCAT 240
Query: 712 PMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIK 771
W+RVG R T + L Y+FRV AEN +G S PS S+ T K+ K
Sbjct: 241 TAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE-----PTITKEDK 295
Query: 772 KRQYDFDE 779
R ++DE
Sbjct: 296 TRAMNYDE 303
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 123/255 (48%), Gaps = 6/255 (2%)
Query: 1064 VLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSS 1123
V W +GK I ++ G + E + + S+ ++ ++V A N G ++S
Sbjct: 36 VKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 1124 DIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 1183
++ A PK + + L GE +I +PFSG+P P W D + +G
Sbjct: 95 EV-EVPAKIHLPKTLEGMGA--VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
Query: 1184 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDI 1243
+ + + T + D+G Y + N G D + ++ V D P PP+G + VSD+
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDV 210
Query: 1244 TPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRF 1303
+ +S +L+W P DGGS ITNY+VEK + W ++ R Y V L Y+F
Sbjct: 211 SRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQ-ARETRYTVINLFGKTSYQF 269
Query: 1304 RVRAENQYGVSEPLE 1318
RV AEN++G+S+P E
Sbjct: 270 RVIAENKFGLSKPSE 284
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 24/301 (7%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGG 144
G P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 145 VFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPN------ALYIPEG 198
+L VTD D Y A N G ++ +++ P +I +P A++ G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRG 119
Query: 199 DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDYXXX 257
+ +KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY--- 176
Query: 258 XXXXXXXXXXXFXXXXXXXXXXXXXXXD------VSEITKHTCTLHWNPPKYDGGLKVTH 311
F D VS++++ + L W P DGG K+T+
Sbjct: 177 ----VVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITN 232
Query: 312 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 371
Y+VE+ + W+ + +T + V L Y F V+A N+ G+ P E P
Sbjct: 233 YIVEKCATTAERWLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291
Query: 372 K 372
K
Sbjct: 292 K 292
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 130/301 (43%), Gaps = 24/301 (7%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGG 1751
G P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 1752 VFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPN------ALYIPEG 1805
+L VTD D Y A N G ++ +++ P +I +P A++ G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRG 119
Query: 1806 DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDYXXX 1864
+ +KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY--- 176
Query: 1865 XXXXXXXXXXXFXXXXXXXXXXXXXXXD------VSEITKHTCTLHWNPPKYDGGLKVTH 1918
F D VS++++ + L W P DGG K+T+
Sbjct: 177 ----VVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITN 232
Query: 1919 YVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKA 1978
Y+VE+ + W+ + +T + V L Y F V+A N+ G+ P E P
Sbjct: 233 YIVEKCATTAERWLRVG-QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTIT 291
Query: 1979 K 1979
K
Sbjct: 292 K 292
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 890 DEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWT 949
D+ + +V D P PP + + + DS+ L WT P +GGS+ITNY+VEK + W
Sbjct: 187 DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWL 246
Query: 950 KVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH 997
+V T + V NL ++Y+FRV+AEN++GLSKP+ +P K
Sbjct: 247 RVGQARETRYT-VINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 128/355 (36%), Gaps = 100/355 (28%)
Query: 1336 GQPQ-IVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSKIRPTSSTVYC 1394
G P+ IV W ++ D G K ++ G I + + +TVY
Sbjct: 30 GHPKPIVKWYRQGKEIIAD-----------GLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 1395 KDTTMNSSNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1454
T N S G S V V + + P L G+ + GE SI +PF P P
Sbjct: 79 VRAT-NQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 1455 FWFANDSIIDDSDTRVHKQ--LTMNSASLVVKNS-QRSDGGQYRLQLKNPAGFDTATLHS 1511
W +ID++ H Q +T + SLV N +R D G Y + KN G D T+
Sbjct: 137 TWQKGQDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 1512 RLRTLPDSVNPRCHLPSSTSKERPKFPTHPNHQPWLKWARASLTSKGVDSTEDSISLVWS 1571
+ +PD PR K D + DS++L W+
Sbjct: 194 DVADVPDP--PRG-------------------------------VKVSDVSRDSVNLTWT 220
Query: 1572 KPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQF 1631
+P DGGS I YIVEK + ++W++ A
Sbjct: 221 EPASDGGSKITNYIVEKCATTAERWLRVGQAR---------------------------- 252
Query: 1632 LEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTP 1686
E ++V+NL Y+FR+IA N G S+PS + P
Sbjct: 253 -------------------ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 435
D P PP V+ V D VNL+W +P DGGS+I Y ++K ++ W RV A +
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA--RET 254
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 467
+ + NL Y+FRV A+N+ GLS PS S
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 2042
D P PP V+ V D VNL+W +P DGGS+I Y ++K ++ W RV A +
Sbjct: 197 DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA--RET 254
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 2074
+ + NL Y+FRV A+N+ GLS PS S
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 2141
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 2186
+ LII SV DA Y RA N+GG S A L + K ++P
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 25/244 (10%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 60
Query: 1194 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV-----VDKPSPPQGPLDVSDITPE 1246
Y TD + Y ++ N GS S + + V + P +G V + E
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 1247 SCSLSWKPPLDDGGSPITNYVV-EKYESATGFWSKLSSFVRSPAYDVF--GLETNRQYRF 1303
S+ K P P+ + + G + + + RS VF G+E +
Sbjct: 121 VVSI--KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSFTSLVFPNGVERKDAGFY 176
Query: 1304 RVRAENQYGVSEP-LELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSK 1362
V A+N++G+ + +ELD + VPDPP ++ D ++ L W P +DGGSK
Sbjct: 177 VVCAKNRFGIDQKTVELDVA-------DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 1363 IQGY 1366
I Y
Sbjct: 230 ITNY 233
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 973 FRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSP 1032
+ V A+N++G+ + + +D DVP P K D + DS++L W++P DGGS
Sbjct: 176 YVVCAKNRFGIDQKTVELDVA------DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 1033 IQRYIVEKRLISDDKWIKASMAH 1055
I YIVEK + ++W++ A
Sbjct: 230 ITNYIVEKCATTAERWLRVGQAR 252
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 17/244 (6%)
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 495
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 496 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 554
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 555 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 614
A N+ G+ EL + P PPR + + + KIT Y
Sbjct: 180 AKNRFGIDQKTVELDVADVPD---PPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVE 236
Query: 615 EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQ 674
+ + + R T+ + + +RV+AEN G+ +P P
Sbjct: 237 KCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGL----------SKPSEPS 286
Query: 675 FPTV 678
PT+
Sbjct: 287 EPTI 290
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 2102
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 2103 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 2161
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 2162 AVNKGGVKSTKAELIIMTAPKFNVPPR 2188
A N+ G+ EL + P PPR
Sbjct: 180 AKNRFGIDQKTVELDVADVPD---PPR 203
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTP 79
YI+E+ WL+ E ++V+NL Y+FR+IA N G S+PS + P
Sbjct: 233 YIVEKCATTAERWLRVG--QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 96/129 (74%), Gaps = 1/129 (0%)
Query: 771 KKRQYDFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGT 830
++R YD DE GK +RGK S+YD YVFDI+ +Y PQPV+IK V DHYDI EE+GT
Sbjct: 3 RRRGYDVDEQGKIVRGKGTVS-SNYDNYVFDIWKQYYPQPVEIKHDHVLDHYDIHEELGT 61
Query: 831 GAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDD 890
GAFGVVHR ER TGN FAAKF+ H +KE +RKEI M+ L HP L+NLHDAFEDD+
Sbjct: 62 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDN 121
Query: 891 EMVLIFEVL 899
EMV+I+E +
Sbjct: 122 EMVMIYEFM 130
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 540
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 541 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 582
N V G D EY RA N G TK E++ + + + P +F
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF 475
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 2147
P IV + +A F C + P ++W K RE+ S ++ G+ Y L I
Sbjct: 377 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 436
Query: 2148 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 2189
N V G D EY RA N G TK E++ + + + P +F
Sbjct: 437 NRVKGDDKGEYTVRAKNSYG---TKEEIVFLNVTRHSEPLKF 475
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+P FIV V G+ C + P W ++ RE+ +Y G + L
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 150 FNEVTDVDNGDYTCEAYNSVG 170
N V D G+YT A NS G
Sbjct: 436 INRVKGDDKGEYTVRAKNSYG 456
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+P FIV V G+ C + P W ++ RE+ +Y G + L
Sbjct: 376 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 1757 FNEVTDVDNGDYTCEAYNSVG 1777
N V D G+YT A NS G
Sbjct: 436 INRVKGDDKGEYTVRAKNSYG 456
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 606 PKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQ 665
P +TW++D+ ++ + + LTI D Y V A+N G IV +
Sbjct: 406 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 465
Query: 666 ISDRPDPPQFPTVE 679
++ +P +F +E
Sbjct: 466 VTRHSEPLKFEPLE 479
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 164 bits (415), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 95/120 (79%), Gaps = 1/120 (0%)
Query: 781 GKKIRGKAD-EKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRC 839
G K+RGK D K++DYD++ DI+ KYVPQPV++K SVYD+YDILEE+G+GAFGVVHRC
Sbjct: 11 GSKVRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRC 70
Query: 840 RERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ TG +F AKFI + L+K ++ EI IMNQLHHPKLINLHDAFED EMVLI E L
Sbjct: 71 VEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 345
V E+TK + TL W+PP DGG K+ +Y+VE+R+ + + ++T CH T++ V L EG
Sbjct: 14 VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGC 73
Query: 346 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 405
Y F V+A NE G+G P E +KA ++P PPG + V + V+LSW+KP DG
Sbjct: 74 SYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 406 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 465
GSRI GY ++ GSD W A ++ I LI+G +Y FRV AQNE G+S P
Sbjct: 131 GSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQ 188
Query: 466 ASNSVQIKD 474
S V KD
Sbjct: 189 LSVPVIAKD 197
Score = 150 bits (379), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 1952
V E+TK + TL W+PP DGG K+ +Y+VE+R+ + + ++T CH T++ V L EG
Sbjct: 14 VKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGC 73
Query: 1953 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 2012
Y F V+A NE G+G P E +KA ++P PPG + V + V+LSW+KP DG
Sbjct: 74 SYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 2013 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSS 2072
GSRI GY ++ GSD W A ++ I LI+G +Y FRV AQNE G+S P
Sbjct: 131 GSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQ 188
Query: 2073 ASNSVQIKD 2081
S V KD
Sbjct: 189 LSVPVIAKD 197
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 105/218 (48%), Gaps = 37/218 (16%)
Query: 898 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTT 957
+D P PP++L E S+TL W PP +GGS+I NY+VEK++ ++ V++
Sbjct: 2 AMDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 958 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDS 1017
+V L G +Y FRV+AEN+YG+ PA T + +KA + P PG +D T +S
Sbjct: 62 TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRNS 118
Query: 1018 ISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSER 1077
+SL W KP HDGGS I YIVE + DKW + + + +
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEAT----------------- 161
Query: 1078 GSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAG 1115
+T LI+ EY FRV A N G
Sbjct: 162 -----------------ITGLIQGEEYSFRVSAQNEKG 182
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Query: 1227 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVR 1286
+D P PPQ L V ++T S +L+W PPL DGGS I NY+VEK ES +S +++
Sbjct: 2 AMDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 1287 SPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTN 1346
++ V L+ Y FRV AEN+YG+ P E S+ A P PPG+ ++D N
Sbjct: 61 KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS---ERPLPPGKITLMDVTRN 117
Query: 1347 NATLMWDRPRTDGGSKIQGYKMLLKT 1372
+ +L W++P DGGS+I GY + ++T
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQT 143
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 647 YRVVAENDLGMD---SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITN 703
+RV+AEN+ G+ ++ S+RP PP T+ D+ +S++L W P DGGS I
Sbjct: 77 FRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILG 136
Query: 704 YIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTK 763
YIVE + W + T ITGL G +Y FRV A+N G SDP S + K
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Query: 764 D 764
D
Sbjct: 197 D 197
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 668 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVG-NTRFTT 726
D P PPQ V+++ S+ L W P+ DGGS I NYIVEKRE ++ V N T+
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 727 MAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLI 760
+ L G Y FRV AEN YG P+ T++ +
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESV 97
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 435
D P PP V +V V L+WD PL DGGS+I+ Y ++K E A+ V C +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKT 62
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 474
+ L EG Y FRV A+NE G+ LP+ + SV+ +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 2042
D P PP V +V V L+WD PL DGGS+I+ Y ++K E A+ V C +
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKT 62
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 2081
+ L EG Y FRV A+NE G+ LP+ + SV+ +
Sbjct: 63 SWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 1225 VYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF 1284
V ++P PP G + + D+T S SLSW+ P DGGS I Y+VE + W+ ++
Sbjct: 97 VKASERPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT- 154
Query: 1285 VRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAK 1326
V+ + GL +Y FRV A+N+ G+S+P +L + AK
Sbjct: 155 VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPF 959
+RP PP + + +S++L W P +GGS I Y+VE + S W ++ T
Sbjct: 101 ERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEA 160
Query: 960 VRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 996
+ L G Y FRV A+N+ G+S P P+ AK
Sbjct: 161 T-ITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 47/129 (36%)
Query: 1559 VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEG 1618
+D T +S+SL W KP HDGGS I YIVE + DKW
Sbjct: 112 MDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWA--------------------- 150
Query: 1619 KSIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKS 1678
C V E + + L++G +Y FR+ A N G S
Sbjct: 151 ------------------------TCATVKVTEATIT--GLIQGEEYSFRVSAQNEKGIS 184
Query: 1679 EPSICTTPV 1687
+P + PV
Sbjct: 185 DPRQLSVPV 193
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPV 80
YI+E + G W C V E + + L++G +Y FR+ A N G S+P + PV
Sbjct: 137 YIVEMQTKGSDKWATCATVKVTEATIT--GLIQGEEYSFRVSAQNEKGISDPRQLSVPV 193
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 1562 TEDSISLVWSKPRHDGGSPIQRYIVEKR 1589
T+ S++L W P DGGS I+ YIVEKR
Sbjct: 18 TKTSVTLTWDPPLLDGGSKIKNYIVEKR 45
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 5/197 (2%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 534
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD--KGE 592
+ LII SV DA Y RA N+GG S A L + K ++P +GE
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 593 NVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVA 651
V +KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 652 ENDLGMDSAIVKIQISD 668
+N G+D V++ ++D
Sbjct: 181 KNRFGIDQKTVELDVAD 197
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGG 144
G P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 145 VFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP------NALYIPEG 198
+L VTD D Y A N G ++ +++ P +I +P A++ G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRG 119
Query: 199 DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDY 254
+ +KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGG 1751
G P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 1752 VFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP------NALYIPEG 1805
+L VTD D Y A N G ++ +++ P +I +P A++ G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRG 119
Query: 1806 DNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDY 1861
+ +KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 2141
A AP LRN N NA C +TG PKP + W + +EI + E G
Sbjct: 1 GAMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 2186
+ LII SV DA Y RA N+GG S A L + K ++P
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 20/178 (11%)
Query: 1336 GQPQ-IVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSKIRPTSSTVYC 1394
G P+ IV W ++ D G K ++ G I + + +TVY
Sbjct: 30 GHPKPIVKWYRQGKEIIAD-----------GLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 1395 KDTTMNSSNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1454
T N S G S V V + + P L G+ + GE SI +PF P P
Sbjct: 79 VRAT-NQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 1455 FWFANDSIIDDSDTRVHKQ--LTMNSASLVVKNS-QRSDGGQYRLQLKNPAGFDTATL 1509
W +ID++ H Q +T + SLV N +R D G Y + KN G D T+
Sbjct: 137 TWQKGQDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 495
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 496 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 554
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 555 AVNKGGVKSTKAEL 568
A N+ G+ EL
Sbjct: 180 AKNRFGIDQKTVEL 193
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 2102
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 2103 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 2161
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 2162 AVNKGGVKSTKAEL 2175
A N+ G+ EL
Sbjct: 180 AKNRFGIDQKTVEL 193
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 1064 VLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSS 1123
V W +GK I ++ G + E + + S+ ++ ++V A N G ++S
Sbjct: 36 VKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 1124 DIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 1183
++ A PK + + L GE +I +PFSG+P P W D + +G
Sbjct: 95 EV-EVPAKIHLPKTLEGMGA--VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 151
Query: 1184 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 1229
+ + + T + D+G Y + N G D + ++ V D
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 18/198 (9%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 4 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 60
Query: 1194 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV-----VDKPSPPQGPLDVSDITPE 1246
Y TD + Y ++ N GS S + + V + P +G V + E
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 1247 SCSLSWKPPLDDGGSPITNYVV-EKYESATGFWSKLSSFVRSPAYDVF--GLETNRQYRF 1303
S+ K P P+ + + G + + + RS VF G+E +
Sbjct: 121 VVSI--KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSFTSLVFPNGVERKDAGFY 176
Query: 1304 RVRAENQYGVSEP-LELD 1320
V A+N++G+ + +ELD
Sbjct: 177 VVCAKNRFGIDQKTVELD 194
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 91/194 (46%), Gaps = 5/194 (2%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYT 537
AP LRN N NA C +TG PKP + W + +EI + E G +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 538 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD--KGENVV 595
LII SV DA Y RA N+GG S A L + K ++P +GE V
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 596 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDA-SNVDTAPYRVVAEND 654
+KIPF+G P P ITW + ++I++ GH+ V + L + D Y V A+N
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 655 LGMDSAIVKIQISD 668
G+D V++ ++D
Sbjct: 182 FGIDQKTVELDVAD 195
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGGVFRL 148
P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG +L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP------NALYIPEGDNTK 202
VTD D Y A N G ++ +++ P +I +P A++ G+
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVS 121
Query: 203 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDY 254
+KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 174
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISSGARYRV-ETAGGVFRL 1755
P F L++L V TL C+ TG P P +W R G+E I+ G +YR+ E GG +L
Sbjct: 3 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 62
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP------NALYIPEGDNTK 1809
VTD D Y A N G ++ +++ P +I +P A++ G+
Sbjct: 63 IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKI-HLPKTLEGMGAVHALRGEVVS 121
Query: 1810 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYI-IIFIKEIRKEDAGDY 1861
+KI ++G ++ K ++ ++ ++ V + ++F + ++DAG Y
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 174
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GDTYT 2144
AP LRN N NA C +TG PKP + W + +EI + E G +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 2145 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 2186
LII SV DA Y RA N+GG S A L + K ++P
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 103
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 20/178 (11%)
Query: 1336 GQPQ-IVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSKIRPTSSTVYC 1394
G P+ IV W ++ D G K ++ G I + + +TVY
Sbjct: 28 GHPKPIVKWYRQGKEIIAD-----------GLKYRIQEFKGGYHQLIIASVTDDDATVYQ 76
Query: 1395 KDTTMNSSNSEPGKQSGPVIVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAA 1454
T N S G S V V + + P L G+ + GE SI +PF P P
Sbjct: 77 VRAT-NQGGSVSGTASLEVEVPAKIHLP-KTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 134
Query: 1455 FWFANDSIIDDSDTRVHKQ--LTMNSASLVVKNS-QRSDGGQYRLQLKNPAGFDTATL 1509
W +ID++ H Q +T + SLV N +R D G Y + KN G D T+
Sbjct: 135 TWQKGQDLIDNNG---HYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 189
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 495
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 117
Query: 496 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 554
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 118 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 177
Query: 555 AVNKGGVKSTKAEL 568
A N+ G+ EL
Sbjct: 178 AKNRFGIDQKTVEL 191
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQN 2102
Q+ I ++ + ++V A N+ G S + S++++ P P+ + + +A++
Sbjct: 61 QLIIASVTDDDATVYQVRATNQGG---SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 117
Query: 2103 HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII-NSVYGVDADEYVCR 2161
+ +G P P I+W KG I + + + +L+ N V DA YV
Sbjct: 118 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 177
Query: 2162 AVNKGGVKSTKAEL 2175
A N+ G+ EL
Sbjct: 178 AKNRFGIDQKTVEL 191
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 1064 VLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSS 1123
V W +GK I ++ G + E + + S+ ++ ++V A N G ++S
Sbjct: 34 VKWYRQGKEIIAD-GLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 92
Query: 1124 DIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 1183
++ A PK + + L GE +I +PFSG+P P W D + +G
Sbjct: 93 EV-EVPAKIHLPKTLEGMGA--VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHY 149
Query: 1184 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVD 1229
+ + + T + D+G Y + N G D + ++ V D
Sbjct: 150 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 195
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 18/198 (9%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
AP +L R++ V T+ +G PKP W G E+ DG +K+ E +
Sbjct: 2 APHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-LKYRIQEFKGG 58
Query: 1194 YRNKSAKRATDSGS--YTIQLVNTVGSDSASCKVYV-----VDKPSPPQGPLDVSDITPE 1246
Y TD + Y ++ N GS S + + V + P +G V + E
Sbjct: 59 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 118
Query: 1247 SCSLSWKPPLDDGGSPITNYVV-EKYESATGFWSKLSSFVRSPAYDVF--GLETNRQYRF 1303
S+ K P P+ + + G + + + RS VF G+E +
Sbjct: 119 VVSI--KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT--RSFTSLVFPNGVERKDAGFY 174
Query: 1304 RVRAENQYGVSEP-LELD 1320
V A+N++G+ + +ELD
Sbjct: 175 VVCAKNRFGIDQKTVELD 192
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 1/195 (0%)
Query: 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 535
M+ +AP I +++ AQ C I G P P I W + +E+ S ++ + ++G T
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 595
+TL + + D Y C A N+ G T ++L++ P+F+ ++ Y G +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 596 VKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAEND 654
+ + + G P P +TW+ +++++ + +E +E + L +++ Y+V N
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 655 LGMDSAIVKIQISDR 669
G AI+ ++I D+
Sbjct: 183 FGTVDAILDVEIQDK 197
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 4/173 (2%)
Query: 86 VGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV 145
+ GE P +KD+ LG+ L C+ G P+P +W R G+E+ +Y++ + G
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 146 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRID---RMPNALYIPEGDNTK 202
L D G YTC A N VG TSS++ + P+ + Y G +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 203 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDY 254
+ + Y G ++ +++Q+ + + Y + +K + RK AG Y
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 4/173 (2%)
Query: 1693 VGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV 1752
+ GE P +KD+ LG+ L C+ G P+P +W R G+E+ +Y++ + G
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 1753 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRID---RMPNALYIPEGDNTK 1809
L D G YTC A N VG TSS++ + P+ + Y G +
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 1810 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI-RKEDAGDY 1861
+ + Y G ++ +++Q+ + + Y + +K + RK AG Y
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%)
Query: 2083 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 2142
M+ +AP I +++ AQ C I G P P I W + +E+ S ++ + ++G T
Sbjct: 3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 2143 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 2184
+TL + + D Y C A N+ G T ++L++ P+F+
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFH 104
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1437 GEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQR-SDGGQYR 1495
G +HV ++ P PA WF ++ +S+ + + T + LV+KN QR + G+Y+
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSEN-ITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 1496 LQLKNPAGFDTATL 1509
+QL N G A L
Sbjct: 177 VQLSNVFGTVDAIL 190
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 1095 VTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLA-GEE 1153
+T + E E E + G +SS +++ P P +++ A G
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHP----GYPLKEKYYGAVGST 120
Query: 1154 FTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 1213
+ V + GRP P W + I E +E+ T K+ +R T +G Y +QL
Sbjct: 121 LRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 1214 NTVGSDSASCKVYVVDK 1230
N G+ A V + DK
Sbjct: 181 NVFGTVDAILDVEIQDK 197
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 34/181 (18%)
Query: 591 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 650
GE + G P P I WYR + + + + + R LT+ D Y +
Sbjct: 22 GEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI 81
Query: 651 AENDLGMDSAIVKIQISDRPD-PPQFPTVED---------------IGHDSLALVW--RA 692
A N++G K+ + P P +P E IG A+ W
Sbjct: 82 ATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQ 141
Query: 693 PIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLS-PGHQYEFRVYAENVYGRS 751
+ NIT +E EH +T + + + H +++V NV+G
Sbjct: 142 KLLQNSENIT---IENTEH------------YTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 752 D 752
D
Sbjct: 187 D 187
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
AP I ++ +D+T GE ++ GRP P W G E+ + K +S+ +T
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-SSDGRTH 63
Query: 1194 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 1232
+ D G YT N VG S K+ + P
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQ 102
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 148/383 (38%), Gaps = 20/383 (5%)
Query: 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 146
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIF 206
LH +V D+G Y CEA + +G S + I P+ Y EG+ +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 207 YAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYXXXXXXXXXX 264
+ P + ++ V+ + + K +I+ I D G Y
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 265 XXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW 324
+ + E+++ T + +N P GG+ + HY V+ ++++ W
Sbjct: 184 RFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 325 ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG--PPLEGINPIKAKSPYDKPSPPG 382
+ + T ++ L Y V AVN G G +E I P +PSPP
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE----IFQTLPVREPSPPS 298
Query: 383 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPN 441
I G F LS K DDGG+ I Y + + + D W V I + +
Sbjct: 299 IHGQPSSGKSF-KLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ-GNKDHIILEH 355
Query: 442 LIEGRQYEFRVYAQNEAGLSLPS 464
L YE ++ A N G S P+
Sbjct: 356 LQWTMGYEVQITAANRLGYSEPT 378
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 148/383 (38%), Gaps = 20/383 (5%)
Query: 1701 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 1753
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIF 1813
LH +V D+G Y CEA + +G S + I P+ Y EG+ +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 1814 YAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYXXXXXXXXXX 1871
+ P + ++ V+ + + K +I+ I D G Y
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 1872 XXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW 1931
+ + E+++ T + +N P GG+ + HY V+ ++++ W
Sbjct: 184 RFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 1932 ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG--PPLEGINPIKAKSPYDKPSPPG 1989
+ + T ++ L Y V AVN G G +E I P +PSPP
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE----IFQTLPVREPSPPS 298
Query: 1990 IPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID-KHEVGSDAWQRVNVAICAPSQINIPN 2048
I G F LS K DDGG+ I Y + + + D W V I + +
Sbjct: 299 IHGQPSSGKSF-KLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ-GNKDHIILEH 355
Query: 2049 LIEGRQYEFRVYAQNEAGLSLPS 2071
L YE ++ A N G S P+
Sbjct: 356 LQWTMGYEVQITAANRLGYSEPT 378
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 484 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 536
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 595
+L I V D+ Y C A ++ G L I APKF T Y+ +G +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 596 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 653
+ P I W RD V+ + +++T + R IL I S+ D Y A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 654 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 713
+G + ++D P P + ++ + + + P GG I +Y V+ +E
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 714 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 754
W V + TM + L P YE RV A N G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 14/178 (7%)
Query: 895 IFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 954
I + D P P + E + + + + P +GG I +Y V+ K+ S +W V S+
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 955 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA----LTIDPIKAKHPFDVPGAPGAPKG 1010
V + NL +TYE RV A N G + P++ P + G P + K
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGK- 307
Query: 1011 VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLI-SDDKWIKASMAHIPD-TSLKYVLW 1066
S L +K + DGG+PI YIV+ R +D+W++ + D L+++ W
Sbjct: 308 ------SFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW 358
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 1204 DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 1263
D G Y N +G+ + + D PS P G + + +++ + +S+ P GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 1264 TNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSI 1323
+Y V+ E A+ W + S + LE N Y RV A N G + +++ I
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE--I 285
Query: 1324 TAKFPFTVPDPP---GQP 1338
P P PP GQP
Sbjct: 286 FQTLPVREPSPPSIHGQP 303
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 2091 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 2143
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 2144 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 2183
+L I V D+ Y C A ++ G L I APKF
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF 103
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 856 SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL--DRPHPPENLHADEF 913
SH ++ ++ ++ N + ++ ++ + D + IF+ L P PP ++H
Sbjct: 247 SHGVQTMVVLNNLE-PNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP-SIHGQPS 304
Query: 914 AGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST-VWTKVSSYVTTPFVRVRNLAIGSTYE 972
+G S L T +D+GG+ I Y+V+ + + W + + + +L YE
Sbjct: 305 SGKSFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYE 363
Query: 973 FRVMAENQYGLSKPAL 988
++ A N+ G S+P +
Sbjct: 364 VQITAANRLGYSEPTV 379
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 42/265 (15%)
Query: 1141 LSIRDMTVLAGEEFTITVPFSGRPKPTPIW-------TVNGDEVSPDGRIKFETSENQTI 1193
+ +++ T + T+ G P P W T + S DGRI+ + +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 1194 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 1253
K K +DSG Y + + +G S + + P I+ ++ SW+
Sbjct: 65 LHIKDVK-LSDSGRYDCEAASRIGGHQKSMYLDIEYAPK---------FISNQTIYYSWE 114
Query: 1254 PPLDDGGSPIT-NYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRV-----RA 1307
G+PI + V+ A+ W + + PA + L+T R + +
Sbjct: 115 ------GNPINISCDVKSNPPASIHWRRDKLVL--PAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 1308 ENQYGVSEPLELDNSITAKFP---FTVPDPPGQP---QIVDWDTNNATLMWDRPRTDGGS 1361
+N +G N I +F + D P P +I++ A + +++P + GG
Sbjct: 167 DNDFGRYN-CTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGV 225
Query: 1362 KIQGYKMLLKTPTGELPTTIWSKIR 1386
I Y++ +K E+ + IW +R
Sbjct: 226 PIHHYQVDVK----EVASEIWKIVR 246
>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
pdb|2J90|B Chain B, Crystal Structure Of Human Zip Kinase In Complex With A
Tetracyclic Pyridone Inhibitor (pyridone 6)
Length = 304
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 64/101 (63%), Gaps = 12/101 (11%)
Query: 811 VDIKTSSVY------DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHN 858
VD+ T ++Y DHY++ EE+G+G F +V +CR++ TG +AAKFI
Sbjct: 11 VDLGTENLYFQSMVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLXSSRRG 70
Query: 859 LEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ +E I +E++I+ ++ HP +I LHD FE+ ++VLI E++
Sbjct: 71 VSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELV 111
>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With A Beta-Carboline Ligand
pdb|3BQR|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase
3 (Dapk3) In Complex With An Imidazo-Pyridazine Ligand
Length = 283
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 816 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRKEID 869
S V DHY++ EE+G+G F +V +CR++ TG +AAKFI + +E I +E++
Sbjct: 1 SMVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVN 60
Query: 870 IMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
I+ ++ HP +I LHD FE+ ++VLI E++
Sbjct: 61 ILREIRHPNIITLHDIFENKTDVVLILELV 90
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 148
E P FI PL+ + +G+ +TLQC+ GTP + W + ++ S Y+++ V L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI---GTPPRIDRMPNALYIPEGDNTKVKI 205
N+V D G+YTC+A NSVG +S+ + I PP R ++ G +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 206 FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
G +P++VS K+G +++ D + + + + + I + + G Y
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 1755
E P FI PL+ + +G+ +TLQC+ GTP + W + ++ S Y+++ V L
Sbjct: 4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI---GTPPRIDRMPNALYIPEGDNTKVKI 1812
N+V D G+YTC+A NSVG +S+ + I PP R ++ G +
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 1813 FYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
G +P++VS K+G +++ D + + + + + I + + G Y
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 21/290 (7%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 536
A + P I PL + A QC + G P+ I+W K ++ + + + + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR---DTAYFDKGEN 593
+L+IN V D EY C+A N G ++ A L+I + +PP F + G
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK---ERKLPPSFARKLKDVHETLGFP 118
Query: 594 VVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 653
V + G +++WY+D E+++ + A L I Y A N
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 654 DLGMDSAIVKIQISDRPDPPQF---PTVEDI-----GHDSLALVWRAPIWDGGSNITNYI 705
LG S+ K+ +S+ PP F P D+ G + API IT +
Sbjct: 179 PLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPI-----KIT-WA 232
Query: 706 VEKRE-HPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 754
+ RE P ++ T+ + ++ G ++ YA NV G+ S
Sbjct: 233 KDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 9/210 (4%)
Query: 46 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 104
+ +VL + +G+ ++ A N GK C+ + + E P FI L+ +V
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QEPPRFIKKLEPSRIVKQ 305
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 165 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 224
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 366 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 425
Query: 225 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+S ++K + I I + D G+Y
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 9/210 (4%)
Query: 1653 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 1711
+ +VL + +G+ ++ A N GK C+ + + E P FI L+ +V
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QEPPRFIKKLEPSRIVKQ 305
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 1772 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 1831
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 366 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 425
Query: 1832 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+S ++K + I I + D G+Y
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEY 455
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Query: 500 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 559
F+C +TG I+W K +REI P + + +T TL + V DA +Y C A N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 560 GVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIES 619
G S A+L + P+F + + + E+ + G P+ K+ WY+D I+
Sbjct: 277 GKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 334
Query: 620 GGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 387
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 15/242 (6%)
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 493
+ + + + +G ++ YA N AG S S + +++P P I L + +
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVK 304
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364
Query: 554 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 613
A N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 365 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKD 421
Query: 614 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 673
+ SG + + + + I + + D Y+ A ND+G D+ + I + PP
Sbjct: 422 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK---APP 478
Query: 674 QF 675
+F
Sbjct: 479 RF 480
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 161
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 162 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 220
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 269 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Query: 221 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 329 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 1768
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 1769 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 1827
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 269 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Query: 1828 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 329 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 49 VLNLVEGNDY-EFRIIAVNAIGKSEPSICTTPVKICEFVGGEK---PDFIVPLKDLVVPL 104
V+N V+ +D E+ A N++G ++ ++ V V E+ P F LKD+ L
Sbjct: 64 VINKVDHSDVGEYTCKAENSVG----AVASSAV----LVIKERKLPPSFARKLKDVHETL 115
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G + +C G+ + W ++G + A + V L + G Y C
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCS 175
Query: 165 AYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG 221
A N +G A +S+++ + PP D P ++ + G++ K G P++++ K+
Sbjct: 176 ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN 235
Query: 222 RVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
R ++ +K T++++ + + ++ K DAG Y
Sbjct: 236 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 1656 VLNLVEGNDY-EFRIIAVNAIGKSEPSICTTPVKICEFVGGEK---PDFIVPLKDLVVPL 1711
V+N V+ +D E+ A N++G ++ ++ V V E+ P F LKD+ L
Sbjct: 64 VINKVDHSDVGEYTCKAENSVG----AVASSAV----LVIKERKLPPSFARKLKDVHETL 115
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G + +C G+ + W ++G + A + V L + G Y C
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCS 175
Query: 1772 AYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG 1828
A N +G A +S+++ + PP D P ++ + G++ K G P++++ K+
Sbjct: 176 ASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN 235
Query: 1829 RVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
R ++ +K T++++ + + ++ K DAG Y
Sbjct: 236 REIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458
Query: 165 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRV 223
A N VG + + PPR + + + G+ +++ G +P+ V+ K+ G +
Sbjct: 459 ASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518
Query: 224 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
V+ D + ++ + +AG Y
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKY 549
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 399 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458
Query: 1772 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN-GRV 1830
A N VG + + PPR + + + G+ +++ G +P+ V+ K+ G +
Sbjct: 459 ASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518
Query: 1831 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
V+ D + ++ + +AG Y
Sbjct: 519 VRESDNIWISYSENIATLQFSRAEPANAGKY 549
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 10/193 (5%)
Query: 475 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 534
P+ K P + L+ A+ +C + G P +SW K RE+ ++ I +E
Sbjct: 385 PVFRKKPHPVETLKGADV------HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENV 594
++ I +V D EY C+A N G + + + P+F + D + GE V
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF--VKKLSDISTV-VGEEV 495
Query: 595 VVKIPFTGYPKPKITWYRDN-EVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAEN 653
++ G + W++D E++ + + SE A L A + Y +N
Sbjct: 496 QLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555
Query: 654 DLGMDSAIVKIQI 666
+ G + +
Sbjct: 556 EAGTQECFATLSV 568
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 2107 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
F+C +TG I+W K +REI P + + +T TL + V DA +Y C A N
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 2167 GVKSTKAELIIMTAPKF 2183
G S A+L + P+F
Sbjct: 277 GKDSCSAQLGVQEPPRF 293
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 2143
A + P I PL + A QC + G P+ I+W K ++ + + + + +
Sbjct: 2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 2144 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 2189
+L+IN V D EY C+A N G ++ A L+I + +PP F
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIK---ERKLPPSF 104
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 2141
P+ K P + L+ A+ +C + G P +SW K RE+ ++ I +E
Sbjct: 385 PVFRKKPHPVETLKGADV------HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 2183
++ I +V D EY C+A N G + + + P+F
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF 480
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 2100
+ + + + +G ++ YA N AG S S + +++P P I L + +
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVK 304
Query: 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364
Query: 2161 RAVNKGGVKSTKAELIIMTAPKFNVPPR 2188
A N G S+ L + P F P
Sbjct: 365 EAHNAAGSASSSTSLKVKEPPVFRKKPH 392
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 98/447 (21%), Positives = 151/447 (33%), Gaps = 65/447 (14%)
Query: 1086 LLLMFIPNRVTSLI----ENHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPKITSDL 1141
L FI N T I ++H ++ A N G S+ + PP DL
Sbjct: 148 LQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPP-----FFDL 202
Query: 1142 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 1201
+ + GE T +G W + E+ P G K EN +
Sbjct: 203 KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTK 262
Query: 1202 ATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ--GPLDVSDITPESCSLSWKPPLDDG 1259
D+G YT N G DS S ++ V + PP+ L+ S I + ++ + G
Sbjct: 263 G-DAGQYTCYASNVAGKDSCSAQLGVQE---PPRFIKKLEPSRIVKQDEHTRYECKI--G 316
Query: 1260 GSPITNYVVEKYESATGFWSKLS-SFVRSPA-YDVFGLETNRQYRFRVRAEN-------- 1309
GSP + K E+ SK SFV S A +++ L + A N
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Query: 1310 -QYGVSEPLELDNSITAKFPFTVPDPPGQ------------PQIVDWDTNNATLMWDRPR 1356
V EP + K P V G P V W + L R
Sbjct: 377 TSLKVKEP-----PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-----R 426
Query: 1357 TDGGSKIQGYKMLLKTPTGELPTTIWSKIRPTSSTVYCKDTTMNSSNSEPGKQSGPVIVE 1416
+ KI L + + + + +S DT + S I
Sbjct: 427 SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGS------------ITL 474
Query: 1417 EQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTM 1476
+ P + V LS DI+ GE+ + + WF + I + +
Sbjct: 475 KAPPRFVKKLS---DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE 531
Query: 1477 NSASLVVKNSQRSDGGQYRLQLKNPAG 1503
N A+L ++ ++ G+Y Q+KN AG
Sbjct: 532 NIATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 25 ERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICE 84
++RE+ K N L S +LN+ + E++ A N +G S+ + + +K
Sbjct: 421 DKRELRSGKKYKIMSENFL-TSIHILNVDSADIGEYQCKASNDVG-SDTCVGSITLKA-- 476
Query: 85 FVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREI-SSGARYRVETAG 143
P F+ L D+ +G+ + LQ G W ++ EI + +
Sbjct: 477 -----PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE 531
Query: 144 GVFRLHFNEVTDVDNGDYTCEAYNSVG 170
+ L F+ + G YTC+ N G
Sbjct: 532 NIATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 1653 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLG 1712
S +LN+ + E++ A N +G S+ + + +K P F+ L D+ +G
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVG-SDTCVGSITLKA-------PPRFVKKLSDISTVVG 492
Query: 1713 KLLTLQCEATGTPVPKCRWLRNGREI-SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
+ + LQ G W ++ EI + + + L F+ + G YTC+
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552
Query: 1772 AYNSVG 1777
N G
Sbjct: 553 IKNEAG 558
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 2056 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP 2115
E+ A+N G S+ + K P P L++ + F+C I G
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKLP-----PSFARKLKDVHETLGFPVAFECRINGSE 129
Query: 2116 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175
+SW K + A + TL I +Y C A N G S+ A+L
Sbjct: 130 PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
Query: 2176 IIM---TAPKFNVPPRFRDTAYFES 2197
+ P F++ P D A ES
Sbjct: 190 TLSEHEVPPFFDLKPVSVDLALGES 214
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 7/113 (6%)
Query: 1400 NSSNSEP---GKQSGPVIVEEQPNKPVMDLSGVR-DITVKAGEDFSIHVPFMAFPQPAAF 1455
N S S P S + + E P DL V D+ + F HV A P
Sbjct: 173 NCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTA---PIKI 229
Query: 1456 WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTAT 1508
+A D+ L N+A+L V + D GQY N AG D+ +
Sbjct: 230 TWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
pdb|1YRP|B Chain B, Catalytic Domain Of Human Zip Kinase Phosphorylated At
Thr265
Length = 278
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ V DHY++ EE+G+G F +V +CR++ TG +AAKFI + +E I +
Sbjct: 5 FRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIER 64
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E++I+ ++ HP +I LHD FE+ ++VLI E++
Sbjct: 65 EVNILREIRHPNIITLHDIFENKTDVVLILELV 97
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ HP +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHPNIITLHDVYENRTDVVLILELV 97
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%)
Query: 896 FEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV 955
+++DRP PP+ + ++ G+++ L WTPP+D+G + IT Y ++K D S W V +
Sbjct: 12 IQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHY 71
Query: 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 987
+ L IG+ Y FRV +EN GLS+ A
Sbjct: 72 HRTSATITELVIGNEYYFRVFSENMCGLSEDA 103
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 662 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV-G 720
+ IQI DRP PPQ +ED+ +++AL W P DG + IT Y ++K + W V
Sbjct: 10 IDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE 69
Query: 721 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 757
+ T+ IT L G++Y FRV++EN+ G S+ +T +
Sbjct: 70 HYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMT 106
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1225 VYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF 1284
+ ++D+P PPQ + + D+ E+ +L+W PP DDG + IT Y ++K + + W +
Sbjct: 12 IQIIDRPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH 70
Query: 1285 VRSPAYDVFGLETNRQYRFRVRAENQYGVSE 1315
+ + L +Y FRV +EN G+SE
Sbjct: 71 YHRTSATITELVIGNEYYFRVFSENMCGLSE 101
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 435
D+P PP I + V G+ V L+W P DDG + I GY I K + S W V + +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTV-IEHYHRT 74
Query: 436 QINIPNLIEGRQYEFRVYAQNEAGLS 461
I L+ G +Y FRV+++N GLS
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLS 100
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 2042
D+P PP I + V G+ V L+W P DDG + I GY I K + S W V + +
Sbjct: 16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTV-IEHYHRT 74
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAGLS 2068
I L+ G +Y FRV+++N GLS
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLS 100
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 345
+ ++ L W PPK DG +T Y +++ D W + H T+ + L G
Sbjct: 26 IEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGN 85
Query: 346 EYLFHVMAVNENGM 359
EY F V + N G+
Sbjct: 86 EYYFRVFSENMCGL 99
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 1952
+ ++ L W PPK DG +T Y +++ D W + H T+ + L G
Sbjct: 26 IEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGN 85
Query: 1953 EYLFHVMAVNENGM 1966
EY F V + N G+
Sbjct: 86 EYYFRVFSENMCGL 99
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 999 FDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEK 1040
D PG P K D ++++L W+ P+ DG + I Y ++K
Sbjct: 15 IDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQK 56
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 1331 VPDPPGQPQIV---DWDTNNATLMWDRPRTDGGSKIQGYKM 1368
+ D PG PQIV D N L W P+ DG + I GY +
Sbjct: 14 IIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTI 54
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 9/210 (4%)
Query: 46 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 104
+ +VL + +G+ ++ A N GK C+ + + E P FI L+ +V
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QEPPRFIKKLEPSRIVKQ 113
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 165 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 224
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 174 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 225 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+S ++K + I I + D G+Y
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 9/210 (4%)
Query: 1653 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 1711
+ +VL + +G+ ++ A N GK C+ + + E P FI L+ +V
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QEPPRFIKKLEPSRIVKQ 113
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 1772 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 1831
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 174 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 1832 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+S ++K + I I + D G+Y
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 5/179 (2%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 556
+ F+C +TG I+W K +REI P + + +T TL + V DA +Y C A
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 557 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV 616
N G S A+L + P+F + + + E+ + G P+ K+ WY+D
Sbjct: 82 NVAGKDSCSAQLGVQEPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139
Query: 617 IESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
I+ F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 161
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 162 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 220
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 221 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 1768
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 1769 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 1827
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 1828 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 12/233 (5%)
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 493
+ + + + +G ++ YA N AG S S + +++P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVK 112
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 554 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 613
A N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKD 229
Query: 614 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
+ SG + + + + I + + D Y+ A ND+G + + I +
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 571 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 630
M P F++ P D A GE+ K TG KITW +DN I GG++ + E
Sbjct: 3 MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 631 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
A LT+ + D Y A N G DS ++ + +PP+F
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---EPPRF 101
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163
+ F+C +TG I+W K +REI P + + +T TL + V DA +Y C A
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 2164 NKGGVKSTKAELIIMTAPKF 2183
N G S A+L + P+F
Sbjct: 82 NVAGKDSCSAQLGVQEPPRF 101
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Query: 165 AYNSVG 170
A N VG
Sbjct: 267 ASNDVG 272
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Query: 1772 AYNSVG 1777
A N VG
Sbjct: 267 ASNDVG 272
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 9/148 (6%)
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 2100
+ + + + +G ++ YA N AG S S + +++P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQEP-----PRFIKKLEPSRIVK 112
Query: 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 2161 RAVNKGGVKSTKAELIIMTAPKFNVPPR 2188
A N G S+ L + P F P
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPH 200
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 2141
P+ K P + L+ A+ +C + G P +SW K RE+ ++ I +E
Sbjct: 193 PVFRKKPHPVETLKGADV------HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGG 2167
++ I +V D EY C+A N G
Sbjct: 247 LTSIHILNVDSADIGEYQCKASNDVG 272
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 6/172 (3%)
Query: 1140 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 1199
DL + + GE T +G W + E+ P G K EN
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 1200 KRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDG 1259
+ D+G YT N G DS S ++ V + P + L+ S I + ++ + G
Sbjct: 69 TKG-DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIK-KLEPSRIVKQDEHTRYECKI--G 124
Query: 1260 GSPITNYVVEKYESATGFWSKLS-SFVRSPA-YDVFGLETNRQYRFRVRAEN 1309
GSP + K E+ SK SFV S A +++ L + A N
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 877
+Y+ Y I E++G G FG+VHRC E + + AKF+ V ++ L++KEI I+N H
Sbjct: 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHR 61
Query: 878 KLINLHDAFEDDDEMVLIFEVL 899
+++LH++FE +E+V+IFE +
Sbjct: 62 NILHLHESFESMEELVMIFEFI 83
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 5/179 (2%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 556
+ F+C +TG I+W K +REI P + + +T TL + V DA +Y C A
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 557 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEV 616
N G S A+L + P+F + + + E+ + G P+ K+ WY+D
Sbjct: 82 NVAGKDSCSAQLGVQAPPRF--IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE 139
Query: 617 IESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
I+ F + E A+L + + S D+ Y A N G S+ +++ +PP F
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVF 195
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 161
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 162 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 220
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 77 TCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 221 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 1768
+ LG+ T +C TGT K W ++ REI G Y++ L +VT D G Y
Sbjct: 17 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 1769 TCEAYNSVGFAHTSSRVKIGTPPR-IDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKN 1827
TC A N G S+++ + PPR I ++ + + + ++T+ + G ++V K+
Sbjct: 77 TCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 1828 GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+Q +F+ + ++ ++ + + ED+GDY
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 9/210 (4%)
Query: 46 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 104
+ +VL + +G+ ++ A N GK C+ + + P FI L+ +V
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QAPPRFIKKLEPSRIVKQ 113
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 165 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 224
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 174 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 225 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+S ++K + I I + D G+Y
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 9/210 (4%)
Query: 1653 SFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPL 1711
+ +VL + +G+ ++ A N GK C+ + + P FI L+ +V
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDS---CSAQLGV-----QAPPRFIKKLEPSRIVKQ 113
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
+ +C+ G+P K W ++ EI +++R+ V L ++ D+GDYTCE
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 1772 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 1831
A+N+ G A +S+ +K+ PP + P+ + +G + ++ G P +VS K+ R +
Sbjct: 174 AHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL 233
Query: 1832 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+S ++K + I I + D G+Y
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 12/233 (5%)
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 493
+ + + + +G ++ YA N AG S S + ++ P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQAP-----PRFIKKLEPSRIVK 112
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 554 RAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 613
A N G S+ L + P F P +T KG +V ++ G P +++W++D
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQVSWHKD 229
Query: 614 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
+ SG + + + + I + + D Y+ A ND+G + + I +
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163
+ F+C +TG I+W K +REI P + + +T TL + V DA +Y C A
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 81
Query: 2164 NKGGVKSTKAELIIMTAPKF 2183
N G S A+L + P+F
Sbjct: 82 NVAGKDSCSAQLGVQAPPRF 101
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 571 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 630
M P F++ P D A GE+ K TG KITW +DN I GG++ + E
Sbjct: 3 MAPPFFDLKPVSVDLAL---GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 631 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
A LT+ + D Y A N G DS ++ + PP+F
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ---APPRF 101
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Query: 165 AYNSVG 170
A N VG
Sbjct: 267 ASNDVG 272
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G + L+CE GTP + W ++ RE+ SG +Y++ + + +H V D G+Y C+
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266
Query: 1772 AYNSVG 1777
A N VG
Sbjct: 267 ASNDVG 272
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI- 2100
+ + + + +G ++ YA N AG S S + ++ P P I L + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQLGVQAP-----PRFIKKLEPSRIVK 112
Query: 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160
Q+ + +++C I G P+ + W K EI S++ + L + ++ D+ +Y C
Sbjct: 113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 172
Query: 2161 RAVNKGGVKSTKAELIIMTAPKFNVPPR 2188
A N G S+ L + P F P
Sbjct: 173 EAHNAAGSASSSTSLKVKEPPVFRKKPH 200
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 2141
P+ K P + L+ A+ +C + G P +SW K RE+ ++ I +E
Sbjct: 193 PVFRKKPHPVETLKGADV------HLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 246
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGG 2167
++ I +V D EY C+A N G
Sbjct: 247 LTSIHILNVDSADIGEYQCKASNDVG 272
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 66/174 (37%), Gaps = 10/174 (5%)
Query: 1140 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSA 1199
DL + + GE T +G W + E+ P G K EN
Sbjct: 9 DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKV 68
Query: 1200 KRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQ--GPLDVSDITPESCSLSWKPPLD 1257
+ D+G YT N G DS S ++ V +PP+ L+ S I + ++ +
Sbjct: 69 TKG-DAGQYTCYASNVAGKDSCSAQLGV---QAPPRFIKKLEPSRIVKQDEHTRYECKI- 123
Query: 1258 DGGSPITNYVVEKYESATGFWSKLS-SFVRSPA-YDVFGLETNRQYRFRVRAEN 1309
GGSP + K E+ SK SFV S A +++ L + A N
Sbjct: 124 -GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ H +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHHNVITLHDVYENRTDVVLILELV 97
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ H +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHHNVITLHDVYENRTDVVLILELV 97
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ H +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHHNVITLHDVYENRTDVVLILELV 97
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ H +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHHNVITLHDVYENRTDVVLILELV 97
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGVFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 3 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 63 EVSILKEIQHPNVITLHEVYENKTDVILILELV 95
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN------LEKELIRKE 867
K V D YDI EE+G+G F +V +CRE+ TG +AAKFI + + +E I +E
Sbjct: 6 KQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIERE 65
Query: 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
+ I+ Q+ H +I LHD +E+ ++VLI E++
Sbjct: 66 VSILRQVLHHNVITLHDVYENRTDVVLILELV 97
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 3 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 63 EVSILKEIQHPNVITLHEVYENKTDVILILELV 95
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGKFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 73.9 bits (180), Expect = 8e-13, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 532
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 533 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 589
G L I +V ++ Y +A N G ++ AEL++ PP F +
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 590 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 649
+G V +++ TG P P + +YRD I+S F + L I +A D+ Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 650 VAENDLGMDSAIVKIQI 666
A N +G ++ ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGVF 146
+ P F PL+ +VV G T + +G PVP+ W R+G+ IS+ ++ + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKV 203
+L VT ++G Y+ +A N G A +++ + + PP + ++ + +G ++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 204 KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
++ G V ++G +QS F+ + D + I E ED+G Y
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGVF 1753
+ P F PL+ +VV G T + +G PVP+ W R+G+ IS+ ++ + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKV 1810
+L VT ++G Y+ +A N G A +++ + + PP + ++ + +G ++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 1811 KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
++ G V ++G +QS F+ + D + I E ED+G Y
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 494
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 495 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 555 AVNKGGVKSTKAELII 570
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 2101
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 2162 AVNKGGVKSTKAELII 2177
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 150
P+F+ L+ + V G + LQ TG P P ++ R+G EI S +++ G ++ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 151 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
E D+G Y+ A NSVG A +++ + +
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 1757
P+F+ L+ + V G + LQ TG P P ++ R+G EI S +++ G ++ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 1758 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
E D+G Y+ A NSVG A +++ + +
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 2083 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 2139
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 2140 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 2189
G L I +V ++ Y +A N G ++ AEL++ PP F
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNF 106
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 573 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 630
AP F P + + +G + +G+P P+++W+RD +VI + + S+
Sbjct: 5 APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 631 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
A LTI + ++ Y + A N G ++ ++ + PP F
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 1054 AHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNR----VTSLIENHEYEFRVC 1109
AHI + V W +G+ I ST+ + + F R + ++ + + + +
Sbjct: 27 AHISGFPVPEVSWFRDGQVI-----STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81
Query: 1110 AVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 1169
A N +GQ ++S+ ++ A P L + MTV G + + V +G P P
Sbjct: 82 ATNGSGQ---ATSTAELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 1170 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKR-ATDSGSYTIQLVNTVGSDSASCKVYV 1227
+ +G E+ + F+ S+ +Y A+ DSG+Y++ N+VG +++ ++ V
Sbjct: 137 FYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFETSE 1189
AP T L + + VL G T SG P P W +G +S P +I F
Sbjct: 5 APTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 1234
+ A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 63 AKLTI---PAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
Score = 31.6 bits (70), Expect = 5.9, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 1429 VRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTR-VHKQLTMNSASLVVKNSQ 1487
++ + V G + FP P WF + +I S V + A L +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVT 71
Query: 1488 RSDGGQYRLQLKNPAGFDTAT 1508
+++ G+Y L+ N +G T+T
Sbjct: 72 KANSGRYSLKATNGSGQATST 92
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 73.9 bits (180), Expect = 9e-13, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 532
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 533 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF---RDTAYFD 589
G L I +V ++ Y +A N G ++ AEL++ PP F +
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNFVQRLQSMTVR 116
Query: 590 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 649
+G V +++ TG P P + +YRD I+S F + L I +A D+ Y V
Sbjct: 117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 650 VAENDLGMDSAIVKIQI 666
A N +G ++ ++ +
Sbjct: 177 NATNSVGRATSTAELLV 193
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGVF 146
+ P F PL+ +VV G T + +G PVP+ W R+G+ IS+ ++ + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKV 203
+L VT ++G Y+ +A N G A +++ + + PP + ++ + +G ++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 204 KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
++ G V ++G +QS F+ + D + I E ED+G Y
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 5/171 (2%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGVF 1753
+ P F PL+ +VV G T + +G PVP+ W R+G+ IS+ ++ + G
Sbjct: 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPNALYIPEGDNTKV 1810
+L VT ++G Y+ +A N G A +++ + + PP + ++ + +G ++
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRL 123
Query: 1811 KIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
++ G V ++G +QS F+ + D + I E ED+G Y
Sbjct: 124 QVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 494
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 495 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 555 AVNKGGVKSTKAELII 570
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 2101
+++ IP + + + + A N +G A+++ ++ P + L++ Q
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSG-----QATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
+ Q +TG P P + + + EI S I EGD Y+L+I Y D+ Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 2162 AVNKGGVKSTKAELII 2177
A N G ++ AEL++
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 150
P+F+ L+ + V G + LQ TG P P ++ R+G EI S +++ G ++ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 151 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
E D+G Y+ A NSVG A +++ + +
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 55.8 bits (133), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 1757
P+F+ L+ + V G + LQ TG P P ++ R+G EI S +++ G ++ L
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLI 163
Query: 1758 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
E D+G Y+ A NSVG A +++ + +
Sbjct: 164 AEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 2083 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI---FAE 2139
M +AP PL++ ++ A F+ I+G P P +SW + + I+ S + F++
Sbjct: 1 MTTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 2140 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 2189
G L I +V ++ Y +A N G ++ AEL++ PP F
Sbjct: 61 GRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAE---TAPPNF 106
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 573 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG--HFHVETSER 630
AP F P + + +G + +G+P P+++W+RD +VI + + S+
Sbjct: 5 APTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61
Query: 631 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF 675
A LTI + ++ Y + A N G ++ ++ + PP F
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF 106
Score = 41.2 bits (95), Expect = 0.007, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 1054 AHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNR----VTSLIENHEYEFRVC 1109
AHI + V W +G+ I ST+ + + F R + ++ + + + +
Sbjct: 27 AHISGFPVPEVSWFRDGQVI-----STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK 81
Query: 1110 AVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPI 1169
A N +GQ ++S+ ++ A P L + MTV G + + V +G P P
Sbjct: 82 ATNGSGQ---ATSTAELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVVK 136
Query: 1170 WTVNGDEVSPDGRIKFETSENQTIYRNKSAKR-ATDSGSYTIQLVNTVGSDSASCKVYV 1227
+ +G E+ + F+ S+ +Y A+ DSG+Y++ N+VG +++ ++ V
Sbjct: 137 FYRDGAEIQSS--LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVS----PDGRIKFETSE 1189
AP T L + + VL G T SG P P W +G +S P +I F
Sbjct: 5 APTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPP 1234
+ A +SG Y+++ N G +++ ++ V + +PP
Sbjct: 63 AKLTI---PAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
Score = 31.6 bits (70), Expect = 6.0, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 1429 VRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTR-VHKQLTMNSASLVVKNSQ 1487
++ + V G + FP P WF + +I S V + A L +
Sbjct: 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVT 71
Query: 1488 RSDGGQYRLQLKNPAGFDTAT 1508
+++ G+Y L+ N +G T+T
Sbjct: 72 KANSGRYSLKATNGSGQATST 92
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILILELV 96
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 15/282 (5%)
Query: 484 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 536
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFD-KGENVV 595
+L I V D+ Y C A ++ G L I APKF T Y+ +G +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF----ISNQTIYYSWEGNPIN 119
Query: 596 VKIPFTGYPKPKITWYRDNEVIESGGHFHVET--SERHAILTIRDASNVDTAPYRVVAEN 653
+ P I W RD V+ + +++T + R IL I S+ D Y A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 654 DLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 713
+G + ++D P P + ++ + + + P GG I +Y V+ +E
Sbjct: 180 HIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS 239
Query: 714 SSWIRVGNTRFTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 754
W V + TM + L P YE RV A N G+ D S
Sbjct: 240 EIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 10/276 (3%)
Query: 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 146
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIF 206
LH +V D+G Y CEA + +G S + I P+ Y EG+ +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 207 YAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYXXXXXXXXXX 264
+ P + ++ V+ + + K +I+ I D G Y
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 265 XXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW 324
+ + E+++ T + +N P GG+ + HY V+ ++++ W
Sbjct: 184 RFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 325 ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG 360
+ + T ++ L Y V AVN G G
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 10/276 (3%)
Query: 1701 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 1753
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIF 1813
LH +V D+G Y CEA + +G S + I P+ Y EG+ +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCD 123
Query: 1814 YAGDQPMEVSLTKNGRVVQSDD--RFKFTVLDDYIIIFIKEIRKEDAGDYXXXXXXXXXX 1871
+ P + ++ V+ + + K +I+ I D G Y
Sbjct: 124 VKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT 183
Query: 1872 XXXXFXXXXXXXXXXXXXXXDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHW 1931
+ + E+++ T + +N P GG+ + HY V+ ++++ W
Sbjct: 184 RFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW 242
Query: 1932 ICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMG 1967
+ + T ++ L Y V AVN G G
Sbjct: 243 KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1204 DSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPI 1263
D G Y N +G+ + + D PS P G + + +++ + +S+ P GG PI
Sbjct: 169 DFGRYNCTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPI 227
Query: 1264 TNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYG 1312
+Y V+ E A+ W + S + LE N Y RV A N G
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKG 276
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 895 IFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 954
I + D P P + E + + + + P +GG I +Y V+ K+ S +W V S+
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 955 VTTPFVRVRNLAIGSTYEFRVMAENQYG 982
V + NL +TYE RV A N G
Sbjct: 249 GVQTMVVLNNLEPNTTYEIRVAAVNGKG 276
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 33/121 (27%)
Query: 1000 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1059
DVP +P K ++ ++ + + ++KP GG PI Y V+ + ++ + W
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW----------- 242
Query: 1060 SLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPW 1119
K V R Q + +L PN YE RV AVN GQG +
Sbjct: 243 --KIV------------RSHGVQTMVVLNNLEPNTT--------YEIRVAAVNGKGQGDY 280
Query: 1120 S 1120
S
Sbjct: 281 S 281
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 435
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 252
Query: 436 QINIPNLIEGRQYEFRVYAQNEAG 459
+ + NL YE RV A N G
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKG 276
Score = 37.7 bits (86), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 2042
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 194 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 252
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAG 2066
+ + NL YE RV A N G
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKG 276
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 2091 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-------ARHHIFAEGDTY 2143
I+ L+N +N C G P P I+W + T + R + + +
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 2144 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 2183
+L I V D+ Y C A ++ G L I APKF
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF 103
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 42/265 (15%)
Query: 1141 LSIRDMTVLAGEEFTITVPFSGRPKPTPIW-------TVNGDEVSPDGRIKFETSENQTI 1193
+ +++ T + T+ G P P W T + S DGRI+ + +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 1194 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWK 1253
K K +DSG Y + + +G S + + P I+ ++ SW+
Sbjct: 65 LHIKDVK-LSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF---------ISNQTIYYSWE 114
Query: 1254 PPLDDGGSPIT-NYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRV-----RA 1307
G+PI + V+ A+ W + + PA + L+T R + +
Sbjct: 115 ------GNPINISCDVKSNPPASIHWRRDKLVL--PAKNTTNLKTYSTGRKMILEIAPTS 166
Query: 1308 ENQYGVSEPLELDNSITAKFP---FTVPDPPGQP---QIVDWDTNNATLMWDRPRTDGGS 1361
+N +G N I +F + D P P +I++ A + +++P + GG
Sbjct: 167 DNDFGRYN-CTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGV 225
Query: 1362 KIQGYKMLLKTPTGELPTTIWSKIR 1386
I Y++ +K E+ + IW +R
Sbjct: 226 PIHHYQVDVK----EVASEIWKIVR 246
>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine
pdb|3GUB|A Chain A, Crystal Structure Of Dapkl93g Complexed With N6-(2-
Phenylethyl)adenosine
Length = 295
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP------VSHNLEKELIRK 866
+ +V D+YD EE+G+G F VV +CRE+ TG +AAKFI + +E I +
Sbjct: 4 FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 63
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
E+ I+ ++ HP +I LH+ +E+ +++LI E++
Sbjct: 64 EVSILKEIQHPNVITLHEVYENKTDVILIGELV 96
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA 885
E +G G FG VH+C E TG AAK I +KE ++ EI +MNQL H LI L+DA
Sbjct: 95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDA 154
Query: 886 FEDDDEMVLIFEVLD 900
FE +++VL+ E +D
Sbjct: 155 FESKNDIVLVMEYVD 169
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 9/228 (3%)
Query: 429 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 488
V + + I L G +R A+N A + A + + DP + +
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI-LSDPGLHRQLYFLQRPS 229
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 548
N AI+ +A +C ++G P P+ +WL+G I ++ + G L+I++V D+
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDS 287
Query: 549 DEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 608
Y C K S AEL ++ P F P Y + ++ + +G P P +
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHP---SNLYAYESMDIEFECAVSGKPVPTV 344
Query: 609 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
W ++ +V+ +F + IL + + D Y+ VAEN+ G
Sbjct: 345 NWMKNGDVVIPSDYFQIVGGSNLRILGVVKS---DEGFYQCVAENEAG 389
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 10/165 (6%)
Query: 461 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE 520
SL S S + M A + + A +C + G P PTI W K ++
Sbjct: 102 SLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD 161
Query: 521 ITP---SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAELIIMTAPKF 576
+ P +R + G L I+ + D+ Y C A N ++ +AE+ I++ P
Sbjct: 162 LNPIPGDSRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL 218
Query: 577 NVPPRFRD---TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE 618
+ F +G++ V++ +GYP P TW R EVI+
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ 263
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 2036 VAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 2095
V + + I L G +R A+N A + A + + DP + +
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI-LSDPGLHRQLYFLQRPS 229
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 2155
N AI+ +A +C ++G P P+ +WL+G I ++ + G L+I++V D+
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDS 287
Query: 2156 DEYVCRAVNKGGVKSTKAELIIMTAPKF 2183
Y C K S AEL ++ P F
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWF 315
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
GK L+C +G P P WLR G E+ + GG L + VTD D+G YTC
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGS-NLLISNVTDDDSGTYTCV 293
Query: 165 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 224
S+ + + PP P+ LY E + + + +G V+ KNG VV
Sbjct: 294 VTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 225 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
D F+ + I+ + K D G Y
Sbjct: 354 IPSDYFQIVGGSNLRIL---GVVKSDEGFY 380
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
GK L+C +G P P WLR G E+ + GG L + VTD D+G YTC
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGGS-NLLISNVTDDDSGTYTCV 293
Query: 1772 AYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVV 1831
S+ + + PP P+ LY E + + + +G V+ KNG VV
Sbjct: 294 VTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 1832 QSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
D F+ + I+ + K D G Y
Sbjct: 354 IPSDYFQIVGGSNLRIL---GVVKSDEGFY 380
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 548
N A ++ + +F+C ++G P PT++W+K + PS I + L I V D
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRILGVVKSDE 377
Query: 549 DEYVCRAVNKGGVKSTKAELII 570
Y C A N+ G + A+LI+
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 2155
N A ++ + +F+C ++G P PT++W+K + PS I + L I V D
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRILGVVKSDE 377
Query: 2156 DEYVCRAVNKGGVKSTKAELII 2177
Y C A N+ G + A+LI+
Sbjct: 378 GFYQCVAENEAGNAQSSAQLIV 399
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE---ISSGARYRVETAGGVFRLH 149
F+ + + +G + L+CE G P+P W +N ++ I +R V +G L
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQ 180
Query: 150 FNEVTDVDNGDYTCEAYNSVGF-AHTSSRVKIGTPPRIDRM------PNALYIPEGDNTK 202
+ + D+G Y C A N + V+I + P + R P+ + EG +
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 203 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
++ +G P + + V+Q + K+++L ++ I + +D+G Y
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSK-KYSLLGGSNLL-ISNVTDDDSGTY 290
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 15/172 (8%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE---ISSGARYRVETAGGVFRLH 1756
F+ + + +G + L+CE G P+P W +N ++ I +R V +G L
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQ 180
Query: 1757 FNEVTDVDNGDYTCEAYNSVGF-AHTSSRVKIGTPPRIDRM------PNALYIPEGDNTK 1809
+ + D+G Y C A N + V+I + P + R P+ + EG +
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 1810 VKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
++ +G P + + V+Q + K+++L ++ I + +D+G Y
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSK-KYSLLGGSNLL-ISNVTDDDSGTY 290
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 167
+ +C +G PVP W++NG + +++ GG L V D G Y C A N
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI--VGGS-NLRILGVVKSDEGFYQCVAEN 386
Query: 168 SVGFAHTSSRVKIGTP 183
G A +S+++ + P
Sbjct: 387 EAGNAQSSAQLIVPKP 402
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 1715 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 1774
+ +C +G PVP W++NG + +++ GG L V D G Y C A N
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI--VGGS-NLRILGVVKSDEGFYQCVAEN 386
Query: 1775 SVGFAHTSSRVKIGTP 1790
G A +S+++ + P
Sbjct: 387 EAGNAQSSAQLIVPKP 402
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 6/99 (6%)
Query: 1422 PVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDD--SDTRVHKQLTMNSA 1479
P+ LS IT G+ + + P P W N ++ D+RV + + S
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRV---VVLPSG 177
Query: 1480 SLVVKNSQRSDGGQYRLQLKNPAGFDTATLHSRLRTLPD 1518
+L + Q D G YR +NPA T + +R L D
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGN-EAEVRILSD 215
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 2068 SLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSRE 2127
SL S S + M A + + A +C + G P PTI W K ++
Sbjct: 102 SLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD 161
Query: 2128 ITP---SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAELIIMTAPKF 2183
+ P +R + G L I+ + D+ Y C A N ++ +AE+ I++ P
Sbjct: 162 LNPIPGDSRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL 218
Query: 2184 N 2184
+
Sbjct: 219 H 219
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 11/191 (5%)
Query: 479 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYT 537
KAP I PL +A+ A F C + P+P ISW + I R+ I G T
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 538 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
++ SV D Y C A N GG + L + PK PP +G V+
Sbjct: 66 IL--SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP---INVKIIEGLKAVL 120
Query: 597 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
G PKP ++W + + + V S L I + D YR VA+N LG
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 657 MD-SAIVKIQI 666
S +VK+++
Sbjct: 178 TAYSKLVKLEV 188
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS-GARYRVETAGGVFRLH 149
P PL+ + + ++ T C P P+ W RN I RY + G + L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LT 65
Query: 150 FNEVTDVDNGDYTCEAYNSVGFA-HTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYA 208
V D D+G Y C A N VG A + +++ P+I R P + I EG +
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 209 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
G+ VS K ++ + R VL+ + I ++KEDAG Y
Sbjct: 126 GNPKPSVSWIKGDSALRENSR--IAVLESG-SLRIHNVQKEDAGQY 168
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS-GARYRVETAGGVFRLH 1756
P PL+ + + ++ T C P P+ W RN I RY + G + L
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL--LT 65
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFA-HTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYA 1815
V D D+G Y C A N VG A + +++ P+I R P + I EG +
Sbjct: 66 ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTM 125
Query: 1816 GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
G+ VS K ++ + R VL+ + I ++KEDAG Y
Sbjct: 126 GNPKPSVSWIKGDSALRENSR--IAVLESG-SLRIHNVQKEDAGQY 168
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 454 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 513
A N G ++ S + V++K P+I P N I+ A CT G PKP++S
Sbjct: 81 ANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133
Query: 514 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 565
W+KG + ++R + G +L I++V DA +Y C A N G +K
Sbjct: 134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 2061 AQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTIS 2120
A N G ++ S + V++K P+I P N I+ A CT G PKP++S
Sbjct: 81 ANNGVGGAVESCGALQVKMK-------PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVS 133
Query: 2121 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 2172
W+KG + ++R + G +L I++V DA +Y C A N G +K
Sbjct: 134 WIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 2086 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYT 2144
KAP I PL +A+ A F C + P+P ISW + I R+ I G T
Sbjct: 6 KAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLT 65
Query: 2145 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPP 2187
++ SV D Y C A N GG + L + PK PP
Sbjct: 66 IL--SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 47 FSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGK 106
++L++ + +D + A N +G + S VK+ KP P ++ + G
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-------KPKITRPPINVKIIEGL 116
Query: 107 LLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166
L C G P P W++ + +R V +G R+H V D G Y C A
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-LRIH--NVQKEDAGQYRCVAK 173
Query: 167 NSVGFAHT 174
NS+G A++
Sbjct: 174 NSLGTAYS 181
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 1654 FSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGK 1713
++L++ + +D + A N +G + S VK+ KP P ++ + G
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM-------KPKITRPPINVKIIEGL 116
Query: 1714 LLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 1773
L C G P P W++ + +R V +G R+H V D G Y C A
Sbjct: 117 KAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS-LRIH--NVQKEDAGQYRCVAK 173
Query: 1774 NSVGFAHT 1781
NS+G A++
Sbjct: 174 NSLGTAYS 181
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 1432 ITVKAGEDFSIHVPF--MAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1489
I VK E +P M P+P+ W DS + + ++R+ + S SL + N Q+
Sbjct: 108 INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE-NSRIA---VLESGSLRIHNVQKE 163
Query: 1490 DGGQYRLQLKNPAGFDTATLHSRLRTL 1516
D GQYR KN G T +S+L L
Sbjct: 164 DAGQYRCVAKNSLG----TAYSKLVKL 186
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 289 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS-TTCHDTTFIVQGLTEGQEY 347
IT+HT TL W P+Y GG K+T Y+VE+RD+ W+ + + + F V GLTE Y
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAY 81
Query: 348 LFHVMAVNENG-MGPPLE 364
F V+A N G + PP E
Sbjct: 82 EFRVIAKNAAGAISPPSE 99
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1896 ITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICIS-TTCHDTTFIVQGLTEGQEY 1954
IT+HT TL W P+Y GG K+T Y+VE+RD+ W+ + + + F V GLTE Y
Sbjct: 22 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAY 81
Query: 1955 LFHVMAVNENG-MGPPLE 1971
F V+A N G + PP E
Sbjct: 82 EFRVIAKNAAGAISPPSE 99
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 671 DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRV--GNTRFTTMA 728
DPP P +I ++ L W P + GG IT+YIVEKR+ P W++ N
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 729 ITGLSPGHQYEFRVYAENVYGR-SDPSTTSDLITTKD 764
++GL+ YEFRV A+N G S PS SD IT +D
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRD 108
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 373 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 432
SP D PPG PV + V L W KP GG +I Y ++K ++ + W + N +
Sbjct: 9 SPID---PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 433 APSQINIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 478
++ + L E YEFRV A+N AG +S PS S+++ +D + A
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 1980 SPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAIC 2039
SP D PPG PV + V L W KP GG +I Y ++K ++ + W + N +
Sbjct: 9 SPID---PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 2040 APSQINIPNLIEGRQYEFRVYAQNEAG-LSLPSSASNSVQIKDPMAA 2085
++ + L E YEFRV A+N AG +S PS S+++ +D + A
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 33/125 (26%)
Query: 1005 PGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYV 1064
PG P ++ T +++L W+KP + GG I YIVEKR + + +W+KA+ ++I +
Sbjct: 14 PGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT-- 71
Query: 1065 LWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQ-GPWSSSS 1123
V+ L E+ YEFRV A NAAG P S S
Sbjct: 72 ------------------------------VSGLTEDAAYEFRVIAKNAAGAISPPSEPS 101
Query: 1124 DIIMC 1128
D I C
Sbjct: 102 DAITC 106
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGK----SEPSICT 77
YI+E+R++ WLK N N+LE F+V L E YEFR+IA NA G SEPS
Sbjct: 45 YIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAI 104
Query: 78 T 78
T
Sbjct: 105 T 105
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 49/131 (37%)
Query: 1559 VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEG 1618
++ T +++L W+KP + GG I YIVEKR + + +W+KA+ +
Sbjct: 20 LNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS---------------- 63
Query: 1619 KSIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGK- 1677
N+LE F+V L E YEFR+IA NA G
Sbjct: 64 -----------------------------NILENEFTVSGLTEDAAYEFRVIAKNAAGAI 94
Query: 1678 ---SEPSICTT 1685
SEPS T
Sbjct: 95 SPPSEPSDAIT 105
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 1233 PPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLS-SFVRSPAYD 1291
PP P+ + +IT + +L W P GG IT+Y+VEK + G W K + S + +
Sbjct: 13 PPGKPVPL-NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 1292 VFGLETNRQYRFRVRAENQYG-VSEPLELDNSITAK 1326
V GL + Y FRV A+N G +S P E ++IT +
Sbjct: 72 VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 917 SLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVS-SYVTTPFVRVRNLAIGSTYEFRV 975
++TL W P GG +IT+Y+VEK+D + W K + S + V L + YEFRV
Sbjct: 26 TVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRV 85
Query: 976 MAENQYGLSKP 986
+A+N G P
Sbjct: 86 IAKNAAGAISP 96
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 1333 DPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSK 1384
DPPG+P ++ + TL W +P GG KI Y + + +LP W K
Sbjct: 12 DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKR----DLPNGRWLK 59
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 481 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 538
P I +P + NA A + F C +G P+P ISW + + I + ++ +G L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTEL 60
Query: 539 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI 598
+ ++ D YVCRA NK G +A L + P + ++ ++ G+ V +
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI---IQLKNETTYENGQ-VTLVC 116
Query: 599 PFTGYPKPKITWYR--DNEVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVA 651
G P P+ITW R D G G V+ + L I+D D+ Y A
Sbjct: 117 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 652 ENDLG 656
+ +G
Sbjct: 177 ASRIG 181
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 2088 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 2145
P I +P + NA A + F C +G P+P ISW + + I + ++ +G L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTEL 60
Query: 2146 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
+ ++ D YVCRA NK G +A L + P
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 91 PDFIVPLKDL--VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 148
P +P K G+ +T C A+G+P P W RNG+ I +Y ++ G L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTEL 60
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKV 203
+ + D G Y C A N G + +++ P I ++ N G T V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLV 115
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 1698 PDFIVPLKDL--VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 1755
P +P K G+ +T C A+G+P P W RNG+ I +Y ++ G L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTEL 60
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKV 1810
+ + D G Y C A N G + +++ P I ++ N G T V
Sbjct: 61 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLV 115
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 572 TAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER 630
+ P ++P + F TA ++GE + +G P+P I+W+R+ ++IE + ++ S
Sbjct: 1 SMPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT 58
Query: 631 HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVW 690
LT+R+ N D PY A N G D +Q+ +P Q + + LV
Sbjct: 59 E--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVC 116
Query: 691 RA 692
A
Sbjct: 117 DA 118
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 146
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 98 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 157
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
LH +V D+G Y CEA + +G S + I
Sbjct: 158 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 1701 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISSGARY---RVETAG--GVF 1753
I+ LK+ +TL C+A G P+P+ W R +G + G + R+E G G
Sbjct: 98 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 157
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
LH +V D+G Y CEA + +G S + I
Sbjct: 158 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1490
+ T + GE+ + P+PA WF N +I++++ + L ++ L V+N SD
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI---LKGSNTELTVRNIINSD 69
Query: 1491 GGQYRLQLKNPAGFD 1505
GG Y + N AG D
Sbjct: 70 GGPYVCRATNKAGED 84
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 1135 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIY 1194
P I+ + T GEE T + SG P+P W NG + + + + S +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 1195 RNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 1231
RN +D G Y + N G D + V +P
Sbjct: 63 RNII---NSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP 877
D+YD+ EE+G GAF VV RC + TG FAAK I ++ + +E I +L HP
Sbjct: 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 88
Query: 878 KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
++ LHD+ +++ L+F+++ E++ A EF ++
Sbjct: 89 NIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 128
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP 877
D+YD+ EE+G GAF VV RC + TG FAAK I ++ + +E I +L HP
Sbjct: 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
++ LHD+ +++ L+F+++ E++ A EF ++
Sbjct: 66 NIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 105
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP 877
D+YD+ EE+G GAF VV RC + TG FAAK I ++ + +E I +L HP
Sbjct: 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
++ LHD+ +++ L+F+++ E++ A EF ++
Sbjct: 66 NIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 105
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHP 877
D+YD+ EE+G GAF VV RC + TG FAAK I ++ + +E I +L HP
Sbjct: 5 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
++ LHD+ +++ L+F+++ E++ A EF ++
Sbjct: 65 NIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEA 104
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
Q +A+ C ++ P P +SWL + E+T + + FA L I ++ D Y C
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 74
Query: 554 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 610
R +G + +I+ P ++P + F TA ++GE + +G P+P I+W
Sbjct: 75 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 132
Query: 611 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
+R+ ++IE + ++ S LT+R+ N D PY A N G D +Q+
Sbjct: 133 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 481 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 538
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 154
Query: 539 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 571
+ ++ D YVCRA NK G +A L +
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 2088 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 2145
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 154
Query: 2146 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178
+ ++ D YVCRA NK G +A L +
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G+ +T C A+G+P P W RNG+ I +Y ++ G L + + D G Y C
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCR 170
Query: 165 AYNSVG 170
A N G
Sbjct: 171 ATNKAG 176
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G+ +T C A+G+P P W RNG+ I +Y ++ G L + + D G Y C
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCR 170
Query: 1772 AYNSVG 1777
A N G
Sbjct: 171 ATNKAG 176
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1490
+ T + GE+ + P+PA WF N +I++++ + L ++ L V+N SD
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI---LKGSNTELTVRNIINSD 163
Query: 1491 GGQYRLQLKNPAGFD 1505
GG Y + N AG D
Sbjct: 164 GGPYVCRATNKAGED 178
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 1124 DIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 1183
DII+ P P I+ + T GEE T + SG P+P W NG + + +
Sbjct: 88 DIIVIVNVP--PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 145
Query: 1184 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--SASCKVYV 1227
+ S + RN +D G Y + N G D A +V+V
Sbjct: 146 ILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 7/101 (6%)
Query: 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR---KEIDIMNQLH 875
+DH++IL IG G+FG V ++ T ++A K++ +E+ +R KE+ IM L
Sbjct: 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLE 73
Query: 876 HPKLINLHDAFEDDDEMVLIFEVL----DRPHPPENLHADE 912
HP L+NL +F+D+++M ++ ++L R H +N+H E
Sbjct: 74 HPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKE 114
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
Q +A+ C ++ P P +SWL + E+T + + FA L I ++ D Y C
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNR-FAMLANNNLQILNINKSDEGIYRC 170
Query: 554 --RAVNKGGVKSTKAELIIMTAPKFNVPPR-FRDTAYFDKGENVVVKIPFTGYPKPKITW 610
R +G + +I+ P ++P + F TA ++GE + +G P+P I+W
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA--ERGEEMTFSCRASGSPEPAISW 228
Query: 611 YRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
+R+ ++IE + ++ S LT+R+ N D PY A N G D +Q+
Sbjct: 229 FRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 481 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 538
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 250
Query: 539 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 571
+ ++ D YVCRA NK G +A L +
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 2088 PEIIVPLR--NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 2145
P I +P + NA A + F C +G P+P ISW + + I + ++ + +G L
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTEL 250
Query: 2146 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178
+ ++ D YVCRA NK G +A L +
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G+ +T C A+G+P P W RNG+ I +Y ++ G L + + D G Y C
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCR 266
Query: 165 AYNSVG 170
A N G
Sbjct: 267 ATNKAG 272
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G+ +T C A+G+P P W RNG+ I +Y ++ G L + + D G Y C
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCR 266
Query: 1772 AYNSVG 1777
A N G
Sbjct: 267 ATNKAG 272
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSD 1490
+ T + GE+ + P+PA WF N +I++++ + L ++ L V+N SD
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI---LKGSNTELTVRNIINSD 259
Query: 1491 GGQYRLQLKNPAGFD 1505
GG Y + N AG D
Sbjct: 260 GGPYVCRATNKAGED 274
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 500 FQCTITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 558
F CT G P+ +I W E I + R + EG L I + DA Y C+A +
Sbjct: 24 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 559 GGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNE 615
G ++ +A +++ K FR+ F +GE+ V + P P ++W NE
Sbjct: 83 KG-QTQEATVVLEIYQKLT----FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 616 VI 617
+
Sbjct: 138 EV 139
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 1124 DIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRI 1183
DII+ P P I+ + T GEE T + SG P+P W NG + + +
Sbjct: 184 DIIVIVNVP--PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241
Query: 1184 KFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSD--SASCKVYV 1227
+ S + RN +D G Y + N G D A +V+V
Sbjct: 242 ILKGSNTELTVRNII---NSDGGPYVCRATNKAGEDEKQAFLQVFV 284
>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native
pdb|3MFS|A Chain A, Cask-4m Cam Kinase Domain, Amppnp
pdb|3MFT|A Chain A, Cask-4m Cam Kinase Domain, Mn2+
pdb|3MFU|A Chain A, Cask-4m Cam Kinase Domain, Amppnp-Mn2+
Length = 351
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-----SHNLEKELIRKEIDIMNQL 874
D Y++ E IG GAF VV RC R+TG FA K + V S L E +++E I + L
Sbjct: 24 DVYELCEVIGKGAFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML 83
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLD 900
HP ++ L + + D + ++FE +D
Sbjct: 84 KHPHIVELLETYSSDGMLYMVFEFMD 109
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 105/275 (38%), Gaps = 35/275 (12%)
Query: 500 FQCTITGCPKPTISWLKGSREITPSARH----HIFAEGDTYT-LIINSVYGVDADEYVCR 554
+C G P P ISW ++I + R+ ++ GD + L I SV+ D Y C
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 555 AVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDN 614
A +K GV A+L + P R + GE ++V P GYP I W RDN
Sbjct: 509 AKSKVGVAEHSAKLNVYGLPYI----RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN 564
Query: 615 EVIE--------SGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD---SAIVK 663
+ G +E ER N D A Y VA+N G S V+
Sbjct: 565 RALPINRKQKVFPNGTLIIENVER----------NSDQATYTCVAKNQEGYSARGSLEVQ 614
Query: 664 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI---RVG 720
+ + R P F L L P D NI ++ ++ + I RVG
Sbjct: 615 VMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI-DWTLDGQAISEDLGITTSRVG 673
Query: 721 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 755
R + + I + H F +A N+ G +T
Sbjct: 674 R-RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTT 707
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 79/217 (36%), Gaps = 23/217 (10%)
Query: 464 SSASNSVQIKDPMAAKAPEII--VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI 521
S+ + I +P+++ P+++ + C G P P W K I
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKF---I 286
Query: 522 TPSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF 576
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 577 NVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTI 636
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 347 KIDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRI 393
Query: 637 RDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 673
D Y+ ND A ++++ R DPP
Sbjct: 394 ESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPP 430
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 86 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 134
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 329 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 388
Query: 135 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPN 191
+ R+E+ V D G Y C N A S+ +K+G PP I +
Sbjct: 389 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQ 437
Query: 192 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK----FTVLDDYI-IIFIKEI 246
+ G + +K G+ E+S +G+ + ++DR++ TV D + + I +
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497
Query: 247 RKEDAGDY 254
D G Y
Sbjct: 498 HANDGGLY 505
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 30/188 (15%)
Query: 1693 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 1741
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 329 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 388
Query: 1742 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG---TPPRIDRMPN 1798
+ R+E+ V D G Y C N A S+ +K+G PP I +
Sbjct: 389 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQ 437
Query: 1799 ALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFK----FTVLDDYI-IIFIKEI 1853
+ G + +K G+ E+S +G+ + ++DR++ TV D + + I +
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497
Query: 1854 RKEDAGDY 1861
D G Y
Sbjct: 498 HANDGGLY 505
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 498 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
A F C TG P T+SW+K + I S L I SV D Y C N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRN 410
Query: 558 KGGVKSTKAELIIMTAPKFNVPPRFRDT---AYFDKGENVVVKIPFTGYPKPKITWYRDN 614
AEL + +F+ PP R + G +V +K G P P+I+W D
Sbjct: 411 DRESAEASAELKL--GGRFD-PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG 467
Query: 615 EVIESG-----GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 669
+ I + G + + + L I D Y+ +A++ +G+ K+ +
Sbjct: 468 KKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Query: 670 P 670
P
Sbjct: 528 P 528
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE---TAGG--VFRLHFNEVTDVDNG 159
G + L+C A G P P+ W +G++I++ RY+V T G V L+ V D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 160 DYTCEAYNSVGFAHTSSRVKIGTPPRIDRM 189
Y C A + VG A S+++ + P I +M
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE---TAGG--VFRLHFNEVTDVDNG 1766
G + L+C A G P P+ W +G++I++ RY+V T G V L+ V D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 1767 DYTCEAYNSVGFAHTSSRVKIGTPPRIDRM 1796
Y C A + VG A S+++ + P I +M
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGLPYIRQM 533
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 108 LTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
+ L C A G PVP RW + R+ + RV+ G L + D+G Y C
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVEDSGKYLC 323
Query: 164 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 223
NSVG + + + P P + G Y G+ VS K+G+
Sbjct: 324 VVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 383
Query: 224 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+ + ++ I+ ++KED G Y
Sbjct: 384 IGHSES----------VLRIESVKKEDKGMY 404
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 1715 LTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
+ L C A G PVP RW + R+ + RV+ G L + D+G Y C
Sbjct: 266 MALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVEDSGKYLC 323
Query: 1771 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 1830
NSVG + + + P P + G Y G+ VS K+G+
Sbjct: 324 VVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKA 383
Query: 1831 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+ + ++ I+ ++KED G Y
Sbjct: 384 IGHSES----------VLRIESVKKEDKGMY 404
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 104 LGKLLTLQCEATGTPVP-KCRWLRNGREISSG---ARYRVETAGGVFRLHFNEVTDVDNG 159
+G+ LTL C G +P W +G+ IS RV G V + E + G
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA--G 690
Query: 160 DYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVK 204
++TC A N G ++ + + PPR P +G + KV+
Sbjct: 691 NFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVE 735
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 1711 LGKLLTLQCEATGTPVP-KCRWLRNGREISSG---ARYRVETAGGVFRLHFNEVTDVDNG 1766
+G+ LTL C G +P W +G+ IS RV G V + E + G
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA--G 690
Query: 1767 DYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVK 1811
++TC A N G ++ + + PPR P +G + KV+
Sbjct: 691 NFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVE 735
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 152
+I ++ + G+ L + C G P+ W R+ R + + +V G + + N
Sbjct: 529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL--IIENV 586
Query: 153 VTDVDNGDYTCEAYNSVGF-AHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFY---- 207
+ D YTC A N G+ A S V++ PRI +P A + +
Sbjct: 587 ERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI--IPFAFEEGPAQVGQYLTLHCSVP 644
Query: 208 AGDQPMEVSLTKNGRVVQSD 227
GD P+ + T +G+ + D
Sbjct: 645 GGDLPLNIDWTLDGQAISED 664
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 1759
+I ++ + G+ L + C G P+ W R+ R + + +V G + + N
Sbjct: 529 YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL--IIENV 586
Query: 1760 VTDVDNGDYTCEAYNSVGF-AHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFY---- 1814
+ D YTC A N G+ A S V++ PRI +P A + +
Sbjct: 587 ERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI--IPFAFEEGPAQVGQYLTLHCSVP 644
Query: 1815 AGDQPMEVSLTKNGRVVQSD 1834
GD P+ + T +G+ + D
Sbjct: 645 GGDLPLNIDWTLDGQAISED 664
Score = 37.4 bits (85), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 81/218 (37%), Gaps = 31/218 (14%)
Query: 409 IQGYWIDKHEVGSDAWQRVNVAI-CAPSQINIPN---LIE-----GRQYEFRVYAQNEAG 459
+ GY ID S W+R N A+ Q PN +IE Q + A+N+ G
Sbjct: 550 VAGYPID-----SIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG 604
Query: 460 LSLPSSASNSVQIKDPMAAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKP-TISWLKG 517
S S V + P II A C++ G P I W
Sbjct: 605 YSARGSLEVQVMV-------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 518 SREITPS---ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
+ I+ + G T I +V A + C A N G + L + P
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLT--IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Query: 575 KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 612
++ + P D A F +G + V+ G+PKP++TW +
Sbjct: 716 RWILEPT--DKA-FAQGSDAKVECKADGFPKPQVTWKK 750
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 2107 FQCTITGCPKPTISWLKGSREITPSARH----HIFAEGDTYT-LIINSVYGVDADEYVCR 2161
+C G P P ISW ++I + R+ ++ GD + L I SV+ D Y C
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 2162 AVNKGGVKSTKAELIIMTAP 2181
A +K GV A+L + P
Sbjct: 509 AKSKVGVAEHSAKLNVYGLP 528
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-------NGREISSGARYRVETAG 143
P +I+ D G ++C+A G P P+ W + +++ RVE
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG- 773
Query: 144 GVFRLHFNEVTDVDNGDYTCEAYNSVG 170
LH + + + G Y CEA N +G
Sbjct: 774 ---TLHVDNIQKTNEGYYLCEAINGIG 797
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-------NGREISSGARYRVETAG 1750
P +I+ D G ++C+A G P P+ W + +++ RVE
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG- 773
Query: 1751 GVFRLHFNEVTDVDNGDYTCEAYNSVG 1777
LH + + + G Y CEA N +G
Sbjct: 774 ---TLHVDNIQKTNEGYYLCEAINGIG 797
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPE--IIVPLRNANAIQNHNAQFQCTITGC 2114
F +A+N AG Q P+ P I+ P A A Q +A+ +C G
Sbjct: 692 FTCHARNLAGHQ---------QFTTPLNVYVPPRWILEPTDKAFA-QGSDAKVECKADGF 741
Query: 2115 PKPTISWLKGSREITPSARHHIFAEGDTY----TLIINSVYGVDADEYVCRAVNKGGVKS 2170
PKP ++W K + TP + + TL ++++ + Y+C A+N G+ S
Sbjct: 742 PKPQVTWKKAVGD-TPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN--GIGS 798
Query: 2171 TKAELIIMT 2179
+ +I+++
Sbjct: 799 GLSAVIMIS 807
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 2109 CTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV-YGVDADEYVCRAVNKGG 2167
C + G P +I W + +R + + + +F G TLII +V D Y C A N+ G
Sbjct: 548 CPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEG 604
Query: 2168 VKSTKA-ELIIMTAPKFNVPPRFRD 2191
+ + E+ +M P+ +P F +
Sbjct: 605 YSARGSLEVQVMVLPRI-IPFAFEE 628
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 150
P F LKD V G+ LQC GTPVP+ WL NG+ I R GV LH
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHI 68
Query: 151 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
+ D+G YTC A N++G S+ V +
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHF 1757
P F LKD V G+ LQC GTPVP+ WL NG+ I R GV LH
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHI 68
Query: 1758 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
+ D+G YTC A N++G S+ V +
Sbjct: 69 QDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 34.7 bits (78), Expect = 0.55, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 573 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH- 631
AP F+ +D A + G++ V++ G P P+ITW + + I+ + T E
Sbjct: 11 APSFS--SVLKDCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQ----YARSTCEAGV 63
Query: 632 AILTIRDASNVDTAPYRVVAENDLGMDS 659
A L I+DA D Y +AEN LG S
Sbjct: 64 AELHIQDALPEDHGTYTCLAENALGQVS 91
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 464 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 523
SS S+ +++ AP L++ I+ + QC++ G P P I+WL + I
Sbjct: 2 SSGSSGMEV-------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ- 53
Query: 524 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 566
AR E L I D Y C A N G S A
Sbjct: 54 YARST--CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 34.3 bits (77), Expect = 0.74, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 2071 SSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITP 2130
SS S+ +++ AP L++ I+ + QC++ G P P I+WL + I
Sbjct: 2 SSGSSGMEV-------APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ- 53
Query: 2131 SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173
AR E L I D Y C A N G S A
Sbjct: 54 YARST--CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSA 94
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
AP +S L +D V+ G++F + G P P W +NG + + T E
Sbjct: 11 APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI----QYARSTCEAGVA 64
Query: 1194 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
+ D G+YT N +G S S V V
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 475 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 532
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 8 PVFVKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 60
Query: 533 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 583
G L I + V DE Y C A N G +T A+L ++ P ++ P+ +
Sbjct: 61 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK 119
Query: 584 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 643
+KG + G P P+I+W++D ++ R L I + D
Sbjct: 120 ---VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESD 176
Query: 644 TAPYRVVAENDLG 656
Y VA N G
Sbjct: 177 QGKYECVATNSAG 189
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGV 145
KP F+ +D G + + C+ATG P P+ W++ G+++SS R+ V + AG V
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGSV 65
Query: 146 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI-------GTPPRIDRMPNALYIPEG 198
R+ V D Y C A NS+G +TS+++ + P ID P L + E
Sbjct: 66 LRIQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQ-LKVVEK 123
Query: 199 DNTKVKIFYAGDQP 212
T + AG P
Sbjct: 124 GRTATMLCAAGGNP 137
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGV 1752
KP F+ +D G + + C+ATG P P+ W++ G+++SS R+ V + AG V
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFDDGAGSV 65
Query: 1753 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI-------GTPPRIDRMPNALYIPEG 1805
R+ V D Y C A NS+G +TS+++ + P ID P L + E
Sbjct: 66 LRIQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQ-LKVVEK 123
Query: 1806 DNTKVKIFYAGDQP 1819
T + AG P
Sbjct: 124 GRTATMLCAAGGNP 137
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 2139
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 8 PVFVKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 60
Query: 2140 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIM 2178
G L I + V DE Y C A N G +T A+L ++
Sbjct: 61 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVL 100
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 413 WIDK-HEVGSDAWQRVNVAICAPSQINI-PNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 470
W+ K +V S ++ + A S + I P ++ + + A N G + +SA SV
Sbjct: 41 WMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSV 99
Query: 471 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF 530
+D + + P I + + + A C G P P ISW K + P+A +
Sbjct: 100 LEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRI 159
Query: 531 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 562
+ + L I S D +Y C A N G +
Sbjct: 160 KQLRSGALQIESSEESDQGKYECVATNSAGTR 191
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 2020 WIDK-HEVGSDAWQRVNVAICAPSQINI-PNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 2077
W+ K +V S ++ + A S + I P ++ + + A N G + +SA SV
Sbjct: 41 WMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSV 99
Query: 2078 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF 2137
+D + + P I + + + A C G P P ISW K + P+A +
Sbjct: 100 LEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRI 159
Query: 2138 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169
+ + L I S D +Y C A N G +
Sbjct: 160 KQLRSGALQIESSEESDQGKYECVATNSAGTR 191
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV G+ T+ C A G P P+ W ++ + +S R + +G L + D
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGA---LQIESSEESD 176
Query: 158 NGDYTCEAYNSVGFAHTS 175
G Y C A NS G +++
Sbjct: 177 QGKYECVATNSAGTRYSA 194
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIA 1671
+ W+ +GK + S+R + +E + G L+ V+ ++ + A
Sbjct: 39 ITWMKKGKKVSSQR---FEVIEFDDGAGSVLRIQPLR-----------VQRDEAIYECTA 84
Query: 1672 VNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRW 1731
N++G+ S + ++ + G P + + VV G+ T+ C A G P P+ W
Sbjct: 85 TNSLGEINTSAKLSVLEEDQLPSG-FPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW 143
Query: 1732 LRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782
++ + +S R + +G L + D G Y C A NS G +++
Sbjct: 144 FKDFLPVDPAASNGRIKQLRSGA---LQIESSEESDQGKYECVATNSAGTRYSA 194
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE----NQTIYRNKSAK 1200
D T L+G + +G PKP W G +VS +FE E ++ R + +
Sbjct: 16 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ---RFEVIEFDDGAGSVLRIQPLR 72
Query: 1201 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 1236
D Y N++G + S K+ V+++ P G
Sbjct: 73 VQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSG 108
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain
Of Human Kiaa1568 Protein
Length = 117
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 1217 GSDSASCKVY-VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY-ESA 1274
GS +S K Y + D P PP P V+D+T S +LSW+P G P + Y++E + +S
Sbjct: 1 GSSGSSGKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQP-GTPGTLPASAYIIEAFSQSV 58
Query: 1275 TGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSI 1323
+ W +++ V++ Y V GL N Y F VRA N G+S+P + + +
Sbjct: 59 SNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPV 107
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 666 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMS-SWIRVGNTRF 724
+SD P PP P V D+ +S+ L W+ P G + YI+E +S SW V N
Sbjct: 12 LSDLPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK 70
Query: 725 TTM-AITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDT 765
TT+ + GL P Y F V A N G SDPS SD + T+D+
Sbjct: 71 TTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 896 FEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYN-STVWTKVSSY 954
+++ D P PP + +S+TL W P G + Y++E + S W V+++
Sbjct: 10 YDLSDLPGPPSKPQVTDVTKNSVTLSWQP-GTPGTLPASAYIIEAFSQSVSNSWQTVANH 68
Query: 955 VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAK 996
V T VR L + Y F V A N GLS P+ DP++ +
Sbjct: 69 VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTFIVQGLTEG 344
V+++TK++ TL W P G L + Y++E S+ + W ++ T + V+GL
Sbjct: 24 VTDVTKNSVTLSWQP-GTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPN 82
Query: 345 QEYLFHVMAVNENGMGPPLEGINPIKAK 372
YLF V A+N G+ P +P++ +
Sbjct: 83 TIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH-WICISTTCHDTTFIVQGLTEG 1951
V+++TK++ TL W P G L + Y++E S+ + W ++ T + V+GL
Sbjct: 24 VTDVTKNSVTLSWQP-GTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPN 82
Query: 1952 QEYLFHVMAVNENGMGPPLEGINPIKAK 1979
YLF V A+N G+ P +P++ +
Sbjct: 83 TIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK-HEVGSDAWQRVNVAICAP 434
D P PP P VT V + V LSW +P G Y I+ + S++WQ V +
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT- 71
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 474
+ + L Y F V A N GLS PS S+ V+ +D
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDK-HEVGSDAWQRVNVAICAP 2041
D P PP P VT V + V LSW +P G Y I+ + S++WQ V +
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT- 71
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKD 2081
+ + L Y F V A N GLS PS S+ V+ +D
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 1000 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1039
D+PG P P+ D T++S++L W +P G P YI+E
Sbjct: 14 DLPGPPSKPQVTDVTKNSVTLSW-QPGTPGTLPASAYIIE 52
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)
Query: 450 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 509
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 510 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 568
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 569 IIM---TAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 625
+ AP+F++ P + G NV + G P P + W + E + V
Sbjct: 198 YVRVQNVAPRFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV 254
Query: 626 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 670
+ +L + D D+A Y VA + LG+ A+ +I + P
Sbjct: 255 GRN----VLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLP 293
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 539
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 540 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 591
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 592 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 651
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 652 ENDLGM 657
N G+
Sbjct: 184 TNSAGV 189
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 142
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 193
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 1749
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 1800
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 2116
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 2117 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 2175
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 2176 IIMTAPKFNVPPRF 2189
+ NV PRF
Sbjct: 198 YVRVQ---NVAPRF 208
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 89/222 (40%), Gaps = 38/222 (17%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIW----LKC-NDYNVLECSFSVLNLVEGNDYE 1666
V W +GK + S+R T +F E GA+ L+ D NV EC
Sbjct: 38 VTWNKKGKKVNSQRFETIEF--DESAGAVLRIQPLRTPRDENVYEC-------------- 81
Query: 1667 FRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPV 1726
+A N++G+ T ++ + G P+ + + VV + T+ C A+G P
Sbjct: 82 ---VAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 1727 PKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 1783
P+ W ++ + +S R + +G L + D G Y C A NS G ++S
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETDQGKYECVATNSAGVRYSSP 194
Query: 1784 -----RVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPM 1820
RV+ PR +P + I G N + G PM
Sbjct: 195 ANLYVRVQ-NVAPRFSILPMSHEIMPGGNVNITCVAVGS-PM 234
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 54 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDF-IVPLKDLVVPLGKLLTLQC 112
E + ++ +A N+ G ++P + V P F I+P+ ++P G + + C
Sbjct: 173 ETDQGKYECVATNSAGVRY----SSPANLYVRVQNVAPRFSILPMSHEIMPGGNV-NITC 227
Query: 113 EATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV-DNGDYTCEAYNSVGF 171
A G+P+P +W++ +++ E V R + E+TDV D+ +YTC A +S+G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTP------EDDMPVGR-NVLELTDVKDSANYTCVAMSSLGV 280
Query: 172 AHTSSRVKIGTPPR 185
+++ + + P+
Sbjct: 281 IEAVAQITVKSLPK 294
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 1661 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDF-IVPLKDLVVPLGKLLTLQC 1719
E + ++ +A N+ G ++P + V P F I+P+ ++P G + + C
Sbjct: 173 ETDQGKYECVATNSAGVRY----SSPANLYVRVQNVAPRFSILPMSHEIMPGGNV-NITC 227
Query: 1720 EATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV-DNGDYTCEAYNSVGF 1778
A G+P+P +W++ +++ E V R + E+TDV D+ +YTC A +S+G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTP------EDDMPVGR-NVLELTDVKDSANYTCVAMSSLGV 280
Query: 1779 AHTSSRVKIGTPPR 1792
+++ + + P+
Sbjct: 281 IEAVAQITVKSLPK 294
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 444 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 503
E Q ++ A N AG+ S A+ V++++ AP + + + N C
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMPGGNVNITCV 228
Query: 504 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 563
G P P + W++G+ ++TP + L + V D+ Y C A++ GV
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSSLGVIE 282
Query: 564 TKAELIIMTAPK 575
A++ + + PK
Sbjct: 283 AVAQITVKSLPK 294
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 2051 EGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCT 2110
E Q ++ A N AG+ S A+ V++++ AP + + + N C
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN----VAPRFSILPMSHEIMPGGNVNITCV 228
Query: 2111 ITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS 2170
G P P + W++G+ ++TP + L + V D+ Y C A++ GV
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPEDDMPV----GRNVLELTDVK--DSANYTCVAMSSLGVIE 282
Query: 2171 TKAELIIMTAPK 2182
A++ + + PK
Sbjct: 283 AVAQITVKSLPK 294
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A+G P P+ W ++ + +S R + +G L + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETD 175
Query: 158 NGDYTCEAYNSVGFAHTSS-----RVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQP 212
G Y C A NS G ++S RV+ PR +P + I G N + G P
Sbjct: 176 QGKYECVATNSAGVRYSSPANLYVRVQ-NVAPRFSILPMSHEIMPGGNVNITCVAVGS-P 233
Query: 213 M 213
M
Sbjct: 234 M 234
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 2146
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 2147 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIM 2178
I + D + Y C A N G + A+L ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX
Length = 361
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-----SHNLEKELIRKEIDIMNQL 874
D Y++ E IG G F VV RC R+TG FA K + V S L E +++E I + L
Sbjct: 26 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML 85
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLD 900
HP ++ L + + D + ++FE +D
Sbjct: 86 KHPHIVELLETYSSDGMLYMVFEFMD 111
>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0G|B Chain B, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form
pdb|3C0H|A Chain A, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0H|B Chain B, Cask Cam-Kinase Domain- Amppnp Complex, P1 Form
pdb|3C0I|A Chain A, Cask Cam-Kinase Domain- 3'-Amp Complex, P212121 Form
Length = 351
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-----SHNLEKELIRKEIDIMNQL 874
D Y++ E IG G F VV RC R+TG FA K + V S L E +++E I + L
Sbjct: 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML 83
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLD 900
HP ++ L + + D + ++FE +D
Sbjct: 84 KHPHIVELLETYSSDGMLYMVFEFMD 109
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQL 874
S+ D Y + EE+G GAF VV RC + TG +AAK I + + + +E I L
Sbjct: 1 SMTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
HP ++ LHD+ ++ L+F+++ E++ A E+ ++
Sbjct: 61 KHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEA 103
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQL 874
S+ D Y + EE+G GAF VV RC + TG +AAK I + + + +E I L
Sbjct: 1 SMTDEYQLFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
HP ++ LHD+ ++ L+F+++ E++ A E+ ++
Sbjct: 61 KHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEA 103
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 811 VDIKTSSVY--DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRK 866
VD+ T ++Y Y + EE+G GAF VV RC + G +AAK I + + + +
Sbjct: 11 VDLGTENLYFQSMYQLFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLER 70
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
E I L HP ++ LHD+ ++ LIF+++ E++ A E+ ++
Sbjct: 71 EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEA 121
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN--LEKELIRKEIDIMNQLH 875
+ + Y+ + +IG G++GVV +CR R TG I A K S + + K++ +EI ++ QL
Sbjct: 1 MMEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLK 60
Query: 876 HPKLINLHDAFEDDDEMVLIFEVLD 900
HP L+NL + F + L+FE D
Sbjct: 61 HPNLVNLLEVFRRKRRLHLVFEYCD 85
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 82/208 (39%), Gaps = 12/208 (5%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 534
AA PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 64
Query: 535 TYTLIINSV-YGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 588
L I V G D Y C A N G S A L I K F V + T
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 124
Query: 589 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 648
+ G V++ G P P I W ++ ++ + S + L I ++ D Y
Sbjct: 125 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 181
Query: 649 VVAENDLGMD-SAIVKIQISDRPDPPQF 675
VAEN +G + S + + R PP F
Sbjct: 182 CVAENSMGTEHSKATNLYVKVRRVPPTF 209
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 11/172 (6%)
Query: 12 YYCEIIVDDCYIIERREVGGAIWLKCNDYNVLE--CSFSVLNL----VEGNDYEFRIIAV 65
+YC D I R+ G + + Y VLE S+L + +D + +A
Sbjct: 28 FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 87
Query: 66 NAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWL 125
N +G + + T + + P V+ +G + + C+A G P P W+
Sbjct: 88 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 147
Query: 126 RNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176
+N ++ S RY ++ L + D G Y C A NS+G H+ +
Sbjct: 148 KNQTKVDMSNPRYSLKDG----FLQIENSREEDQGKYECVAENSMGTEHSKA 195
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRV-ETAGGVFRL 148
P+ I ++ V +G + + C A G P P W +NG+++S + +RY V E GG+ L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 149 HFNEV-TDVDNGDYTCEAYNSVGFAHTSSRVKI-----GTP---PRIDRMPNALYIPEGD 199
V D+ Y C A N VG A ++ TP P I + P I G
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 200 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+ G+ + KN V + ++++ D + + I+ R+ED G Y
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF--LQIENSREEDQGKY 180
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRV-ETAGGVFRL 1755
P+ I ++ V +G + + C A G P P W +NG+++S + +RY V E GG+ L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 1756 HFNEV-TDVDNGDYTCEAYNSVGFAHTSSRVKI-----GTP---PRIDRMPNALYIPEGD 1806
V D+ Y C A N VG A ++ TP P I + P I G
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 1807 NTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+ G+ + KN V + ++++ D + + I+ R+ED G Y
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF--LQIENSREEDQGKY 180
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNG 1766
V+ +G + + C+A G P P W++N ++ S RY ++ L + D G
Sbjct: 123 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSREEDQG 178
Query: 1767 DYTCEAYNSVGFAHTSS 1783
Y C A NS+G H+ +
Sbjct: 179 KYECVAENSMGTEHSKA 195
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 2141
AA PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 5 AAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 64
Query: 2142 TYTLIINSV-YGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK 2182
L I V G D Y C A N G S A L I K
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 107
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ-NHNAQFQCTITGCP 2115
+ A+N G ++ + A+ ++ D A P +I I+ H C G P
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFP-VITQGPGTRVIEVGHTVLMTCKAIGNP 140
Query: 2116 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175
P I W+K ++ S + +G L I + D +Y C A N G + +KA
Sbjct: 141 TPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKATN 197
Query: 2176 IIMTAPKFNVPPRF 2189
+ + + VPP F
Sbjct: 198 LYVKVRR--VPPTF 209
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 1434 VKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQ 1493
++ G + + P P +W N + +D S+ R ++ L ++NS+ D G+
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR----YSLKDGFLQIENSREEDQGK 179
Query: 1494 YRLQLKNPAGFD---TATLHSRLRTLP 1517
Y +N G + L+ ++R +P
Sbjct: 180 YECVAENSMGTEHSKATNLYVKVRRVP 206
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 22/193 (11%)
Query: 475 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 532
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 7 PVFIKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 59
Query: 533 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFR 583
G L I + V DE Y C A N G +T A+L ++ P ++ P+ +
Sbjct: 60 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK 118
Query: 584 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVD 643
+K + G P P+I+W++D ++ R L I + D
Sbjct: 119 ---VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESD 175
Query: 644 TAPYRVVAENDLG 656
Y VA N G
Sbjct: 176 QGKYECVATNSAG 188
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 142
G KP FI +D G + + C+ATG P P+ W++ G+++SS R+ V + A
Sbjct: 3 GDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFDDGA 61
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP-------PRIDRMPNALYI 195
G V R+ V D Y C A NS+G +TS+++ + P ID P L +
Sbjct: 62 GSVLRIQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQ-LKV 119
Query: 196 PEGDNTKVKIFYAGDQP-MEVS----------LTKNGRVVQ 225
E T + AG P E+S T NGR+ Q
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQ 160
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 25/161 (15%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 1749
G KP FI +D G + + C+ATG P P+ W++ G+++SS R+ V + A
Sbjct: 3 GDSKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSS-QRFEVIEFDDGA 61
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP-------PRIDRMPNALYI 1802
G V R+ V D Y C A NS+G +TS+++ + P ID P L +
Sbjct: 62 GSVLRIQPLRVQR-DEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQ-LKV 119
Query: 1803 PEGDNTKVKIFYAGDQP-MEVS----------LTKNGRVVQ 1832
E T + AG P E+S T NGR+ Q
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQ 160
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI--FAE 2139
P+ K PE + + A F C TG PKP I+W+K ++++ S R + F +
Sbjct: 7 PVFIKVPE------DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVS-SQRFEVIEFDD 59
Query: 2140 GDTYTLIINSVYGVDADE--YVCRAVNKGGVKSTKAELIIMTAPKFNVPPRF 2189
G L I + V DE Y C A N G +T A+L ++ + PP F
Sbjct: 60 GAGSVLRIQPLR-VQRDEAIYECTATNSLGEINTSAKLSVLEEEQL--PPGF 108
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 3/152 (1%)
Query: 413 WIDK-HEVGSDAWQRVNVAICAPSQINI-PNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 470
W+ K +V S ++ + A S + I P ++ + + A N G + +SA SV
Sbjct: 40 WMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSV 98
Query: 471 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF 530
++ + P I + + + A C G P P ISW K + P+ +
Sbjct: 99 LEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRI 158
Query: 531 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 562
+ + L I S D +Y C A N G +
Sbjct: 159 KQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 3/152 (1%)
Query: 2020 WIDK-HEVGSDAWQRVNVAICAPSQINI-PNLIEGRQYEFRVYAQNEAGLSLPSSASNSV 2077
W+ K +V S ++ + A S + I P ++ + + A N G + +SA SV
Sbjct: 40 WMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLG-EINTSAKLSV 98
Query: 2078 QIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF 2137
++ + P I + + + A C G P P ISW K + P+ +
Sbjct: 99 LEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRI 158
Query: 2138 AEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169
+ + L I S D +Y C A N G +
Sbjct: 159 KQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A G P P+ W ++ + +S R + +G L + D
Sbjct: 119 VVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGA---LQIESSEESD 175
Query: 158 NGDYTCEAYNSVGFAHTS 175
G Y C A NS G +++
Sbjct: 176 QGKYECVATNSAGTRYSA 193
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 21/174 (12%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIA 1671
+ W+ +GK + S+R +F + G L+ V+ ++ + A
Sbjct: 38 ITWMKKGKKVSSQRFEVIEF---DDGAGSVLRIQPLR-----------VQRDEAIYECTA 83
Query: 1672 VNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRW 1731
N++G+ S + ++ + G P + + VV + T+ C A G P P+ W
Sbjct: 84 TNSLGEINTSAKLSVLEEEQLPPG-FPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW 142
Query: 1732 LRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782
++ + +S R + +G L + D G Y C A NS G +++
Sbjct: 143 FKDFLPVDPATSNGRIKQLRSGA---LQIESSEESDQGKYECVATNSAGTRYSA 193
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE----NQTIYRNKSAK 1200
D T L+G + +G PKP W G +VS +FE E ++ R + +
Sbjct: 15 DQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQ---RFEVIEFDDGAGSVLRIQPLR 71
Query: 1201 RATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 1236
D Y N++G + S K+ V+++ P G
Sbjct: 72 VQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPG 107
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHH 876
++ D +++ E+G GA +V+RC+++ T +A K + ++K+++R EI ++ +L H
Sbjct: 50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVL--KKTVDKKIVRTEIGVLLRLSH 107
Query: 877 PKLINLHDAFEDDDEMVLIFEVL 899
P +I L + FE E+ L+ E++
Sbjct: 108 PNIIKLKEIFETPTEISLVLELV 130
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 148
KP + L+D V + +ATG P P W ++G+ I+ G +Y++ G F L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
++ D+G YTC NS G +S ++ I
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRL 1755
KP + L+D V + +ATG P P W ++G+ I+ G +Y++ G F L
Sbjct: 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFL 64
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
++ D+G YTC NS G +S ++ I
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 1143 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 1202
++D TV + V +G P+PT IWT +G ++ G K++ SE++ + + K
Sbjct: 13 LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG--KYKLSEDKGGFFLEIHKTD 70
Query: 1203 T-DSGSYTIQLVNTVGSDSASCKVYV 1227
T DSG YT + N+ GS S+SCK+ +
Sbjct: 71 TSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 475 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 534
P+++K P I+ L++ + A+F TG P+PT W K + IT ++ + +
Sbjct: 2 PISSK-PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 570
+ L I+ D+ Y C N G S+ +L I
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGD 2141
P+++K P I+ L++ + A+F TG P+PT W K + IT ++ + +
Sbjct: 2 PISSK-PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKG 60
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177
+ L I+ D+ Y C N G S+ +L I
Sbjct: 61 GFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 598 IPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 657
+ TG P+P W +D + I GG + + + L I D+ Y +N G
Sbjct: 28 VKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Query: 658 DSAIVKIQI 666
S+ K+ I
Sbjct: 88 VSSSCKLTI 96
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+PD++ + D +G L C A+G P P RWLR+G+ ++S + R+E +GG L
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--QNRIEVSGG--ELR 349
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
F+++ D+G Y C A N G + S+ + +
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+PD++ + D +G L C A+G P P RWLR+G+ ++S + R+E +GG L
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS--QNRIEVSGG--ELR 349
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
F+++ D+G Y C A N G + S+ + +
Sbjct: 350 FSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 462 LPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISW--LKGSR 519
L +A ++ Q + AK P + A+ +C G P P I W L GS+
Sbjct: 195 LSLAAEDARQYAPSIKAKFPA------DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
Query: 520 EITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKF-NV 578
+ + L I +V D Y C A N G + + +II P + +V
Sbjct: 249 TSKWLSSEPL--------LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
Query: 579 PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE-RHAILTIR 637
DT D G ++ +G P+P + W RD + + S V E R + L +
Sbjct: 301 ---ITDTEA-DIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE 356
Query: 638 DASNVDTAPYRVVAENDLGMDSAIVKIQI 666
D+ Y+ VAEN G A ++ +
Sbjct: 357 -----DSGMYQCVAENKHGTVYASAELTV 380
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDN 158
D G+++TL+C A G PVP+ +W R++ + ++ + LH V D
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKWLSSEPL--LHIQNVDFEDE 269
Query: 159 GDYTCEAYNSVGFAHTSSRVKIGTPP 184
G Y CEA N G R+ I P
Sbjct: 270 GTYECEAENIKGRDTYQGRIIIHAQP 295
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDN 1765
D G+++TL+C A G PVP+ +W R++ + ++ + LH V D
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKW----RKLDGSQTSKWLSSEPL--LHIQNVDFEDE 269
Query: 1766 GDYTCEAYNSVGFAHTSSRVKIGTPP 1791
G Y CEA N G R+ I P
Sbjct: 270 GTYECEAENIKGRDTYQGRIIIHAQP 295
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 108 LTLQCEATGTPVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVTDVDNGDYTCEA 165
+TL C A P RW NG E+ G +RYR+ V N V D G Y C A
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS---NPVKAKDAGSYQCVA 81
Query: 166 YNSVG 170
N+ G
Sbjct: 82 TNARG 86
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 1715 LTLQCEATGTPVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVTDVDNGDYTCEA 1772
+TL C A P RW NG E+ G +RYR+ V N V D G Y C A
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVIS---NPVKAKDAGSYQCVA 81
Query: 1773 YNSVG 1777
N+ G
Sbjct: 82 TNARG 86
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 2147
P+ + + + A + ++ C +G P+P + WL+ + + R + ++ ++
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 354
Query: 2148 NSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 2179
D+ Y C A NK G AEL +
Sbjct: 355 LE----DSGMYQCVAENKHGTVYASAELTVQA 382
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 811 VDIKTSSVY----DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN--LEKELI 864
VD+ T ++Y + Y+ L +G G++G+V +CR + TG I A K S + + K++
Sbjct: 12 VDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIA 71
Query: 865 RKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
+EI ++ QL H L+NL + + L+FE +D
Sbjct: 72 MREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVD 107
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
+ +A C + PTI W R++ + Y L I + D Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172
Query: 554 --RAVNKGGVKSTKAELIIMTAPKFNVPPRFRD-----TAYFDKGENVVVKIPFTGYPKP 606
R + +G + ++I+ NVPP + A + G++V + G+P+P
Sbjct: 173 EGRILARGEINFKDIQVIV------NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 607 KITWYRDNEVIESGGHFHVETSERHAI------LTIRDASNVDTAPYRVVAENDLGMDSA 660
++W +D E IE+ E E+H LTIR+ D A Y +AEN G A
Sbjct: 227 TMSWTKDGEPIEN----EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDA 282
Query: 661 IVKIQI 666
+ +++
Sbjct: 283 SIHLKV 288
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 475 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFA 531
P +A + IV NA A + C G P+PT+SW K I HIF+
Sbjct: 194 PPTVQARQSIV---NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250
Query: 532 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 572
+ D+ L I +V D EYVC A NK G + L +
Sbjct: 251 D-DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 2082 PMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFA 2138
P +A + IV NA A + C G P+PT+SW K I HIF+
Sbjct: 194 PPTVQARQSIV---NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250
Query: 2139 EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 2179
+ D+ L I +V D EYVC A NK G + L +
Sbjct: 251 D-DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVT--DVDNGD- 160
LG+ +TL C+A G P P W ++G I + + +F +E+T +VD D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDE 266
Query: 161 --YTCEAYNSVGFAHTSSRVKI 180
Y C A N G S +K+
Sbjct: 267 AEYVCIAENKAGEQDASIHLKV 288
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVT--DVDNGD- 1767
LG+ +TL C+A G P P W ++G I + + +F +E+T +VD D
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFSDDSSELTIRNVDKNDE 266
Query: 1768 --YTCEAYNSVGFAHTSSRVKI 1787
Y C A N G S +K+
Sbjct: 267 AEYVCIAENKAGEQDASIHLKV 288
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 1433 TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQL-TMNSASLVVKNSQRSDG 1491
T G+ ++ FP+P W + I++ + K + + +S+ L ++N ++D
Sbjct: 207 TANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDE 266
Query: 1492 GQYRLQLKNPAGFDTATLHSRL 1513
+Y +N AG A++H ++
Sbjct: 267 AEYVCIAENKAGEQDASIHLKV 288
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 1135 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGD----EVSPDGRIKFETSEN 1190
P + + SI + T G+ T+ G P+PT WT +G+ E D + F +
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 254
Query: 1191 QTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ RN D Y N G AS + V K
Sbjct: 255 ELTIRNVD---KNDEAEYVCIAENKAGEQDASIHLKVFAK 291
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQL 874
S+ D Y + E+IG GAF VV RC + TG+ +AAK I + + + +E I L
Sbjct: 1 SMTDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLL 60
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
H ++ LHD+ ++ L+F+++ E++ A E+ ++
Sbjct: 61 KHSNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEA 103
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 811 VDIKTSSVY-----------DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH-- 857
VD+ T ++Y D Y + EE+G GAF VV RC ++ +AAK I
Sbjct: 11 VDLGTENLYFQXMATCTRFTDDYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLS 70
Query: 858 NLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
+ + + +E I L HP ++ LHD+ ++ L+F+++ E++ A E+ ++
Sbjct: 71 ARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEA 130
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 475 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 531
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 532 EGDTYTLIINSVYG---VDADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 586
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 587 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 640
KGE +++ P G P+P + W +D ++ S R I L I +
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 641 NVDTAPYRVVAENDLG 656
+D Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGV- 145
+ P I DLVV + TL C+ G P P W ++G +S+ + +RV+ G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 146 -FRLHFNEVTDVDNGDYTCEAYNSVGFA---HTSSRVKI 180
F + D G+Y C A N VG A H S ++ +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGV- 1752
+ P I DLVV + TL C+ G P P W ++G +S+ + +RV+ G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 1753 -FRLHFNEVTDVDNGDYTCEAYNSVGFA---HTSSRVKI 1787
F + D G+Y C A N VG A H S ++ +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 54 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC- 112
E + E+ +A N +G++ + + + + DF V KD V G+ L+C
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECG 131
Query: 113 EATGTPVPKCRWLRNG------REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166
G P P W+++G + +S GA RV G L + V +D G+Y C A
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-GNLLISNVEPIDEGNYKCIAQ 190
Query: 167 NSVGFAHTS 175
N VG +S
Sbjct: 191 NLVGTRESS 199
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 1661 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC- 1719
E + E+ +A N +G++ + + + + DF V KD V G+ L+C
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECG 131
Query: 1720 EATGTPVPKCRWLRNG------REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 1773
G P P W+++G + +S GA RV G L + V +D G+Y C A
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-GNLLISNVEPIDEGNYKCIAQ 190
Query: 1774 NSVGFAHTS 1782
N VG +S
Sbjct: 191 NLVGTRESS 199
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 2082 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 2138
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 2139 EGDTYTLIINSVYG---VDADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 2193
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 2194 YFES 2197
E+
Sbjct: 122 KGET 125
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAK 1200
D+ V E T+ G+P+PT W +G+ VS + R++F+ YR K
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA-LFFYRTMQGK 76
Query: 1201 RATDSGSYTIQLVNTVG---SDSASCKVYVV 1228
+ D G Y N VG S AS ++ V+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQ--- 1487
D+ VK E +++ P+P WF + + ++ + H+ + A + Q
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 1488 RSDGGQYRLQLKNPAGFDTATLHSRLR 1514
DGG+Y KN G + H+ L+
Sbjct: 78 EQDGGEYWCVAKNRVG-QAVSRHASLQ 103
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 2056 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGC 2114
E+ A+N G ++ AS +QI A + V ++ + A +C G
Sbjct: 83 EYWCVAKNRVGQAVSRHAS--LQI----AVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 2115 PKPTISWLK--------GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
P+PT+ W+K + S+R I G+ L+I++V +D Y C A N
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN---LLISNVEPIDEGNYKCIAQNLV 193
Query: 2167 GVK-STKAELIIMT 2179
G + S+ A+LI+
Sbjct: 194 GTRESSYAKLIVQV 207
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 81/196 (41%), Gaps = 17/196 (8%)
Query: 475 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 531
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 532 EGDTYTLIINSVYG---VDADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 586
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 587 YFDKGENVVVKI-PFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI-----LTIRDAS 640
KGE +++ P G P+P + W +D ++ S R I L I +
Sbjct: 122 ---KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 641 NVDTAPYRVVAENDLG 656
+D Y+ +A+N +G
Sbjct: 179 PIDEGNYKCIAQNLVG 194
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGV- 145
+ P I DLVV + TL C+ G P P W ++G +S+ + +RV+ G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 146 -FRLHFNEVTDVDNGDYTCEAYNSVGFA---HTSSRVKI 180
F + D G+Y C A N VG A H S ++ +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR--YRVETAGGV- 1752
+ P I DLVV + TL C+ G P P W ++G +S+ + +RV+ G
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 1753 -FRLHFNEVTDVDNGDYTCEAYNSVGFA---HTSSRVKI 1787
F + D G+Y C A N VG A H S ++ +
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 54 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC- 112
E + E+ +A N +G++ + + + + DF V KD V G+ L+C
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECG 131
Query: 113 EATGTPVPKCRWLRNG------REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166
G P P W+++G + +S GA RV G L + V +D G+Y C A
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-GNLLISNVEPIDEGNYKCIAQ 190
Query: 167 NSVGFAHTS 175
N VG +S
Sbjct: 191 NLVGTRESS 199
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 1661 EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC- 1719
E + E+ +A N +G++ + + + + DF V KD V G+ L+C
Sbjct: 78 EQDGGEYWCVAKNRVGQAVSRHASLQIAVL------RDDFRVEPKDTRVAKGETALLECG 131
Query: 1720 EATGTPVPKCRWLRNG------REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 1773
G P P W+++G + +S GA RV G L + V +D G+Y C A
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG-GNLLISNVEPIDEGNYKCIAQ 190
Query: 1774 NSVGFAHTS 1782
N VG +S
Sbjct: 191 NLVGTRESS 199
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 2082 PMAAK--APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI-TPSARHHIFA 2138
P+A + +P II + +N A C + G P+PTI W K + T + H
Sbjct: 2 PLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 2139 EGDTYTLIINSVYG---VDADEYVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTA 2193
D ++ G D EY C A N+ G S A L I + F V P+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121
Query: 2194 YFES 2197
E+
Sbjct: 122 KGET 125
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD----GRIKFETSENQTIYRNKSAK 1200
D+ V E T+ G+P+PT W +G+ VS + R++F+ YR K
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA-LFFYRTMQGK 76
Query: 1201 RATDSGSYTIQLVNTVG---SDSASCKVYVV 1228
+ D G Y N VG S AS ++ V+
Sbjct: 77 KEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQ--- 1487
D+ VK E +++ P+P WF + + ++ + H+ + A + Q
Sbjct: 18 DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKK 77
Query: 1488 RSDGGQYRLQLKNPAGFDTATLHSRLR 1514
DGG+Y KN G + H+ L+
Sbjct: 78 EQDGGEYWCVAKNRVG-QAVSRHASLQ 103
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 2056 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTI-TGC 2114
E+ A+N G ++ AS +QI A + V ++ + A +C G
Sbjct: 83 EYWCVAKNRVGQAVSRHAS--LQI----AVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136
Query: 2115 PKPTISWLK--------GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
P+PT+ W+K + S+R I G+ L+I++V +D Y C A N
Sbjct: 137 PEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN---LLISNVEPIDEGNYKCIAQNLV 193
Query: 2167 GVK-STKAELIIMT 2179
G + S+ A+LI+
Sbjct: 194 GTRESSYAKLIVQV 207
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDI 870
I + + Y + EE+G GAF VV RC + G +AA I + + + +E I
Sbjct: 4 ITCTRFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARI 63
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
L HP ++ LHD+ ++ LIF+++ E++ A E+ ++
Sbjct: 64 CRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEA 110
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 11/190 (5%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 534
A PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 535 TYTLIINSV-YGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK----FNVPPRFRDTAYF 588
L I V G D Y C A N G S A L I K F V + T
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 589 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYR 648
+ G V++ G P P I W ++ ++ + S + L I ++ D Y
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY---SLKDGFLQIENSREEDQGKYE 179
Query: 649 VVAENDLGMD 658
VAEN +G +
Sbjct: 180 CVAENSMGTE 189
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRV-ETAGG 144
G P+ I ++ V +G + + C A G P P W +NG+++S + +RY V E GG
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 145 VFRLHFNEV-TDVDNGDYTCEAYNSVGFAHTSSRVKI-----GTP---PRIDRMPNALYI 195
+ L V D+ Y C A N VG A ++ TP P I + P I
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 196 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
G + G+ + KN V + ++++ D + + I+ R+ED G Y
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF--LQIENSREEDQGKY 178
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRV-ETAGG 1751
G P+ I ++ V +G + + C A G P P W +NG+++S + +RY V E GG
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 1752 VFRLHFNEV-TDVDNGDYTCEAYNSVGFAHTSSRVKI-----GTP---PRIDRMPNALYI 1802
+ L V D+ Y C A N VG A ++ TP P I + P I
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 1803 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
G + G+ + KN V + ++++ D + + I+ R+ED G Y
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF--LQIENSREEDQGKY 178
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 11/172 (6%)
Query: 12 YYCEIIVDDCYIIERREVGGAIWLKCNDYNVLE--CSFSVLNL----VEGNDYEFRIIAV 65
+YC D I R+ G + + Y VLE S+L + +D + +A
Sbjct: 26 FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85
Query: 66 NAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWL 125
N +G + + T + + P V+ +G + + C+A G P P W+
Sbjct: 86 NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145
Query: 126 RNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176
+N ++ S RY ++ L + D G Y C A NS+G H+ +
Sbjct: 146 KNQTKVDMSNPRYSLKDG----FLQIENSREEDQGKYECVAENSMGTEHSKA 193
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNG 1766
V+ +G + + C+A G P P W++N ++ S RY ++ L + D G
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSREEDQG 176
Query: 1767 DYTCEAYNSVGFAHTSS 1783
Y C A NS+G H+ +
Sbjct: 177 KYECVAENSMGTEHSKA 193
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE--GD 2141
A PEII +N A F C G P P+I W K ++++ + + E G
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 2142 TYTLIINSV-YGVDADEYVCRAVNK-GGVKSTKAELIIMTAPK 2182
L I V G D Y C A N G S A L I K
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 105
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 1434 VKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQ 1493
++ G + + P P +W N + +D S+ R ++ L ++NS+ D G+
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR----YSLKDGFLQIENSREEDQGK 177
Query: 1494 YRLQLKNPAGFDTATLHSRLRTL 1516
Y +N G T HS+ L
Sbjct: 178 YECVAENSMG----TEHSKATNL 196
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ-NHNAQFQCTITGCP 2115
+ A+N G ++ + A+ ++ D A P +I I+ H C G P
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFP-VITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 2116 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173
P I W+K ++ S + +G L I + D +Y C A N G + +KA
Sbjct: 139 TPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKYECVAENSMGTEHSKA 193
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE----LIRKEIDIMNQLH 875
D +DI+ +G G FG V+ RE++ I A K + S LEKE +R+EI+I + L
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQ-LEKEGVEHQLRREIEIQSHLR 72
Query: 876 HPKLINLHDAFEDDDEMVLIFEVLDR 901
HP ++ +++ F D + L+ E R
Sbjct: 73 HPNILRMYNYFHDRKRIYLMLEFAPR 98
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE----LIRKEIDIMNQLH 875
D ++I +G G FG V+ RE+K+ I A K + S +EKE +R+EI+I LH
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKS-QIEKEGVEHQLRREIEIQAHLH 81
Query: 876 HPKLINLHDAFEDDDEMVLIFEVLDR 901
HP ++ L++ F D + LI E R
Sbjct: 82 HPNILRLYNYFYDRRRIYLILEYAPR 107
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+P+++ + D +G L C A G P P RWLRNG ++S + RVE G R
Sbjct: 293 QPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS--QNRVEVLAGDLR-- 348
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
F++++ D+G Y C A N G + S+ + +
Sbjct: 349 FSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+P+++ + D +G L C A G P P RWLRNG ++S + RVE G R
Sbjct: 293 QPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS--QNRVEVLAGDLR-- 348
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
F++++ D+G Y C A N G + S+ + +
Sbjct: 349 FSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 492 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 551
A+ +C G P P I W K ++P AE TL I SV D Y
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP---QWTTAEP---TLQIPSVSFEDEGTY 271
Query: 552 VCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 611
C A N G + + +I+ P++ + D G N+ G P+P + W
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQPEWL---KVISDTEADIGSNLRWGCAAAGKPRPTVRWL 328
Query: 612 RDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
R+ E + S V + L S D+ Y+ VAEN G A ++ +
Sbjct: 329 RNGEPLASQNRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
+G+ +TL+C A G PVP+ +W R++ + TA L V+ D G Y C
Sbjct: 220 VGQQVTLECFAFGNPVPRIKW----RKVDGSLSPQWTTAEPT--LQIPSVSFEDEGTYEC 273
Query: 164 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 223
EA NS G R+ + P ++ + G N + AG V +NG
Sbjct: 274 EAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEP 333
Query: 224 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+ S +R + D + ++ ED+G Y
Sbjct: 334 LASQNRVEVLAGD----LRFSKLSLEDSGMY 360
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
+G+ +TL+C A G PVP+ +W R++ + TA L V+ D G Y C
Sbjct: 220 VGQQVTLECFAFGNPVPRIKW----RKVDGSLSPQWTTAEPT--LQIPSVSFEDEGTYEC 273
Query: 1771 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 1830
EA NS G R+ + P ++ + G N + AG V +NG
Sbjct: 274 EAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEP 333
Query: 1831 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+ S +R + D + ++ ED+G Y
Sbjct: 334 LASQNRVEVLAGD----LRFSKLSLEDSGMY 360
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 424 WQRVNVAIC-----APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 478
W++V+ ++ A + IP++ + + A+N G ++VQ + + A
Sbjct: 240 WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKG-------RDTVQGRIIVQA 292
Query: 479 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 538
+ PE + + + A N ++ C G P+PT+ WL+ + R + A GD L
Sbjct: 293 Q-PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GD---L 347
Query: 539 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 570
+ + D+ Y C A NK G AEL +
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 2031 WQRVNVAIC-----APSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 2085
W++V+ ++ A + IP++ + + A+N G ++VQ + + A
Sbjct: 240 WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKG-------RDTVQGRIIVQA 292
Query: 2086 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTL 2145
+ PE + + + A N ++ C G P+PT+ WL+ + R + A GD L
Sbjct: 293 Q-PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GD---L 347
Query: 2146 IINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177
+ + D+ Y C A NK G AEL +
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 92/248 (37%), Gaps = 41/248 (16%)
Query: 521 ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN-----------KGGVKSTKAELI 569
I RH F T L I D Y C A + K + AE
Sbjct: 144 IPTDGRH--FVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDT 201
Query: 570 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 629
+ AP ++ RF Y G+ V ++ G P P+I W + + G + +
Sbjct: 202 RLFAP--SIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVD------GSLSPQWTT 253
Query: 630 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQF--PTVEDIGHDSLA 687
L I S D Y AEN G D+ +I + +P+ + T DIG +
Sbjct: 254 AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSN--- 310
Query: 688 LVWRAPIWDGGSNITNYIVEKREHPMSSWIRV----GNTRFTTMAI--TGLSPGHQYEFR 741
L W ++ + P++S RV G+ RF+ +++ +G+ ++
Sbjct: 311 LRWGCAAAGKPRPTVRWL--RNGEPLASQNRVEVLAGDLRFSKLSLEDSGM-------YQ 361
Query: 742 VYAENVYG 749
AEN +G
Sbjct: 362 CVAENKHG 369
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 167
+ L C A +P RW NG E+ R + GG + N D G Y C A N
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVI-MNPTKAQDAGVYQCLASN 82
Query: 168 SVG 170
VG
Sbjct: 83 PVG 85
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 1715 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 1774
+ L C A +P RW NG E+ R + GG + N D G Y C A N
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVI-MNPTKAQDAGVYQCLASN 82
Query: 1775 SVG 1777
VG
Sbjct: 83 PVG 85
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 2099 AIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEY 2158
A+ +C G P P I W K ++P AE TL I SV D Y
Sbjct: 218 ALVGQQVTLECFAFGNPVPRIKWRKVDGSLSP---QWTTAEP---TLQIPSVSFEDEGTY 271
Query: 2159 VCRAVNKGGVKSTKAELIIMTAPKF 2183
C A N G + + +I+ P++
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQPEW 296
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 577 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 631
+PP+ D+G+ + V FTG P P++TW I S G FH+E ++
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 632 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
L I D D Y + N+ G DSA V I I
Sbjct: 65 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT-RVHKQLTMNSASLVVKNSQRS 1489
DI++ G+ ++ F P P W I + R H + T + +L++ + Q+
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 1490 DGGQYRLQLKNPAGFDTATLHSRLRTL 1516
DGG Y L L N G D+AT++ +R++
Sbjct: 76 DGGLYTLSLGNEFGSDSATVNIHIRSI 102
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 1131 PPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETS 1188
PP + SD+SI + VL T+ F+G P P W+ G ++ GR E +
Sbjct: 7 PPKIEALPSDISIDEGKVL-----TVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT 61
Query: 1189 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
++ T ++ D G YT+ L N GSDSA+ +++
Sbjct: 62 DDLTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHI 99
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 181 GTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDY 238
G PP+I+ +P+ + I EG V + G+ EV+ + GR + S ++ +F + DD
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 239 IIIFIKEIRKEDAGDY 254
+ I +++K+D G Y
Sbjct: 65 TTLIIMDVQKQDGGLY 80
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1788 GTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDY 1845
G PP+I+ +P+ + I EG V + G+ EV+ + GR + S ++ +F + DD
Sbjct: 5 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 64
Query: 1846 IIIFIKEIRKEDAGDY 1861
+ I +++K+D G Y
Sbjct: 65 TTLIIMDVQKQDGGLY 80
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS--GARYRVETAGGVFRLHFNEVTDV 156
D+ + GK+LT+ C TG P P+ W GR+I S R+ +E + L +V
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 157 DNGDYTCEAYNSVGFAHTSSRVKI 180
D G YT N G + + I
Sbjct: 76 DGGLYTLSLGNEFGSDSATVNIHI 99
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS--GARYRVETAGGVFRLHFNEVTDV 1763
D+ + GK+LT+ C TG P P+ W GR+I S R+ +E + L +V
Sbjct: 16 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 75
Query: 1764 DNGDYTCEAYNSVGFAHTSSRVKI 1787
D G YT N G + + I
Sbjct: 76 DGGLYTLSLGNEFGSDSATVNIHI 99
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 502 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 559
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 29 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 88
Query: 560 GVKSTKAELII 570
G S + I
Sbjct: 89 GSDSATVNIHI 99
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 2109 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 29 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 88
Query: 2167 GVKSTKAELII 2177
G S + I
Sbjct: 89 GSDSATVNIHI 99
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 570 IMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSE 629
I PK +P R T GE + + +PF G P+P++ W + +++ HV TS+
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 630 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDR 669
+ +R A+ D+ Y + + + D+A ++I++ ++
Sbjct: 77 FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 1135 PKITSDLSIRDMTVL-AGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTI 1193
PKI +R + GE+ + VPF G+P+P +WT G + R+ TS+ T+
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTV 80
Query: 1194 YRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ + A R +DSG Y + + D+A+ ++ VV+K
Sbjct: 81 FFVRQAAR-SDSGEYELSVQIENMKDTATIRIRVVEK 116
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 1402 SNSEPGKQSGPVIVEEQPNKPVMDL-SGVRDITV-KAGEDFSIHVPFMAFPQPAAFWFAN 1459
S+ G + PV + E P + L +R + K GE ++ VPF P+P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 1460 DSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHSRL 1513
+ +D S RVH + + V+ + RSD G+Y L ++ DTAT+ R+
Sbjct: 62 GAPLDTS--RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 577 NVPPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG--GHFHVETSERH 631
+PP+ D+G+ + V FTG P P++TW I S G FH+E ++
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 632 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
L I D D Y + N+ G DSA V I I
Sbjct: 63 TTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1431 DITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDT-RVHKQLTMNSASLVVKNSQRS 1489
DI++ G+ ++ F P P W I + R H + T + +L++ + Q+
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 73
Query: 1490 DGGQYRLQLKNPAGFDTATLHSRLRTL 1516
DGG Y L L N G D+AT++ +R++
Sbjct: 74 DGGLYTLSLGNEFGSDSATVNIHIRSI 100
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 1131 PPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETS 1188
PP + SD+SI + VL T+ F+G P P W+ G ++ GR E +
Sbjct: 5 PPKIEALPSDISIDEGKVL-----TVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT 59
Query: 1189 ENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
++ T ++ D G YT+ L N GSDSA+ +++
Sbjct: 60 DDLTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSATVNIHI 97
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 181 GTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDY 238
G PP+I+ +P+ + I EG V + G+ EV+ + GR + S ++ +F + DD
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 239 IIIFIKEIRKEDAGDY 254
+ I +++K+D G Y
Sbjct: 63 TTLIIMDVQKQDGGLY 78
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 1788 GTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTV--LDDY 1845
G PP+I+ +P+ + I EG V + G+ EV+ + GR + S ++ +F + DD
Sbjct: 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 1846 IIIFIKEIRKEDAGDY 1861
+ I +++K+D G Y
Sbjct: 63 TTLIIMDVQKQDGGLY 78
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS--GARYRVETAGGVFRLHFNEVTDV 156
D+ + GK+LT+ C TG P P+ W GR+I S R+ +E + L +V
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 73
Query: 157 DNGDYTCEAYNSVGFAHTSSRVKI 180
D G YT N G + + I
Sbjct: 74 DGGLYTLSLGNEFGSDSATVNIHI 97
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISS--GARYRVETAGGVFRLHFNEVTDV 1763
D+ + GK+LT+ C TG P P+ W GR+I S R+ +E + L +V
Sbjct: 14 DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQ 73
Query: 1764 DNGDYTCEAYNSVGFAHTSSRVKI 1787
D G YT N G + + I
Sbjct: 74 DGGLYTLSLGNEFGSDSATVNIHI 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 502 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 559
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 27 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
Query: 560 GVKSTKAELII 570
G S + I
Sbjct: 87 GSDSATVNIHI 97
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 2109 CTITGCPKPTISWLKGSREI--TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
C TG P P ++W G R+I R HI D TLII V D Y N+
Sbjct: 27 CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
Query: 2167 GVKSTKAELII 2177
G S + I
Sbjct: 87 GSDSATVNIHI 97
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 879
D ++I+ E+G GAFG V++ + ++T + AAK I E E EIDI+ HP +
Sbjct: 37 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI 96
Query: 880 INLHDAFEDDDEMVLIFE 897
+ L DAF ++ + ++ E
Sbjct: 97 VKLLDAFYYENNLWILIE 114
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 879
D ++I+ E+G GAFG V++ + ++T + AAK I E E EIDI+ HP +
Sbjct: 37 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI 96
Query: 880 INLHDAFEDDDEMVLIFE 897
+ L DAF ++ + ++ E
Sbjct: 97 VKLLDAFYYENNLWILIE 114
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS------HNLE--KELIRKEIDI 870
Y YD + IG G VV RC R TG+ FA K + V+ LE +E R+E I
Sbjct: 93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHI 152
Query: 871 MNQLH-HPKLINLHDAFEDDDEMVLIFEVLDR 901
+ Q+ HP +I L D++E M L+F+++ +
Sbjct: 153 LRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 879
D ++I+ E+G GAFG V++ + ++T + AAK I E E EIDI+ HP +
Sbjct: 37 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI 96
Query: 880 INLHDAFEDDDEMVLIFE 897
+ L DAF ++ + ++ E
Sbjct: 97 VKLLDAFYYENNLWILIE 114
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE +D+
Sbjct: 66 NIVKLLDVIHTENKLYLVFEHVDQ 89
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 70 NIVKLLDVIHTENKLYLVFEFLHQ 93
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 66 NIVKLLDVIHTENKLYLVFEFLHQ 89
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVL 899
++ L D ++++ L+FE L
Sbjct: 66 NIVKLLDVIHTENKLYLVFEFL 87
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVL 899
++ L D ++++ L+FE L
Sbjct: 66 NIVKLLDVIHTENKLYLVFEFL 87
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 10 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 69
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 70 NIVKLLDVIHTENKLYLVFEFLHQ 93
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 66 NIVKLLDVIHTENKLYLVFEFLHQ 89
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 539
P + + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 575
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 2146
P + + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 2182
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFRL 148
KP F + D+ V G C+ G P P+ W ++ + ++++ G L
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 182
+EV D+ YTC+A NS+G A ++ + + T
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFRL 1755
KP F + D+ V G C+ G P P+ W ++ + ++++ G L
Sbjct: 41 KPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 1789
+EV D+ YTC+A NS+G A ++ + + T
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 556 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 612
+N V++ A L + K +V P F T +G GYP P++ W++
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 613 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
D+ ++ HF ++ E + LTI + D A Y A N LG + ++ +
Sbjct: 78 DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 1142 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 1201
+I DM V+ G G P P +W + + V + + E S
Sbjct: 47 TILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC 106
Query: 1202 ATDSGSYTIQLVNTVGSDSASCKVYV 1227
D YT + VN++G + + ++ V
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 1414 IVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQ 1473
+ EE+P+ + D+ V G +P P WF +D+ + +S H Q
Sbjct: 33 VAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES---RHFQ 89
Query: 1474 LTMN---SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHSRLRTL 1516
+ + + SL + D +Y + N G T T + T+
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 67 NIVKLLDVIHTENKLYLVFEFLHQ 90
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 5 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 65 NIVKLLDVIHTENKLYLVFEFLHQ 88
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 878 KLINLHDAFEDDDEMVLIFEVL 899
++ L D ++++ L+FE L
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFL 85
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFLHQ 87
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
+D+LE++G G++G V++ ++TG I A K +PV +L++ I KEI IM Q P ++
Sbjct: 31 FDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQE--IIKEISIMQQCDSPHVVK 88
Query: 882 LHDAFEDDDEMVLIFE 897
+ ++ + ++ ++ E
Sbjct: 89 YYGSYFKNTDLWIVME 104
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFLHQ 87
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQ 85
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 5 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 65 NIVKLLDVIHTENKLYLVFEFLHQ 88
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 5 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVL 899
++ L D ++++ L+FE L
Sbjct: 65 NIVKLLDVIHTENKLYLVFEFL 86
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 539
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 540 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 591
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 592 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 651
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 652 ENDLGM 657
N G+
Sbjct: 184 TNSAGV 189
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 142
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 193
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 1749
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 1800
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIWLKC----NDYNVLECSFSVLNLVEGNDYEF 1667
V W +GK + S+R T +F E G + ++ D NV EC
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDE-SAGAVLRIQPLRTPRDENVYEC--------------- 81
Query: 1668 RIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVP 1727
+A N++G+ T ++ + G P+ + + VV + T+ C A+G P P
Sbjct: 82 --VAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 1728 KCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782
+ W ++ + +S R + +G L + D G Y C A NS G ++S
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETDQGKYECVATNSAGVRYSS 193
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 450 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 509
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 510 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 568
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 569 II 570
+
Sbjct: 198 YV 199
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 2116
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 2117 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 2175
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 2176 II 2177
+
Sbjct: 198 YV 199
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A+G P P+ W ++ + +S R + +G L + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETD 175
Query: 158 NGDYTCEAYNSVGFAHTS 175
G Y C A NS G ++S
Sbjct: 176 QGKYECVATNSAGVRYSS 193
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 2146
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 2147 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIM 2178
I + D + Y C A N G + A+L ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 6 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 65
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 66 NIVKLLDVIHTENKLYLVFEFLHQ 89
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 5 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 65 NIVKLLDVIHTENKLYLVFEFLHQ 88
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQ 85
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFLHQ 87
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQ 85
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIM 871
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+ ++
Sbjct: 27 TAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 86
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFEV 898
QL HP ++ L++ FED L+ EV
Sbjct: 87 KQLDHPNIMKLYEFFEDKGYFYLVGEV 113
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQ 85
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 64 NIVKLLDVIHTENKLYLVFEFLHQ 87
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHPKL 879
Y+ LE+IG G +G V + + R+T I A K + + + E +EI ++ +L H +
Sbjct: 4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63
Query: 880 INLHDAFEDDDEMVLIFEVLDR 901
+ LHD D ++ L+FE D+
Sbjct: 64 VRLHDVLHSDKKLTLVFEFCDQ 85
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHPKL 879
Y+ LE+IG G +G V + + R+T I A K + + + E +EI ++ +L H +
Sbjct: 4 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63
Query: 880 INLHDAFEDDDEMVLIFEVLDR 901
+ LHD D ++ L+FE D+
Sbjct: 64 VRLHDVLHSDKKLTLVFEFCDQ 85
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 811 VDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIR 865
+D+K+ + Y+ L+ +G G F V++ R++ T I A K I + H E +
Sbjct: 3 LDVKSRA--KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTAL 60
Query: 866 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
+EI ++ +L HP +I L DAF + L+F+ ++
Sbjct: 61 REIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME 95
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 12/186 (6%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 539
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 540 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKG 591
I + D + Y C A N G + A+L ++ P ++ P+ + ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 592 ENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVA 651
+ +G P P+ITW++D ++ R L I + D Y VA
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVA 183
Query: 652 ENDLGM 657
N G+
Sbjct: 184 TNSAGV 189
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 142
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 193
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 1749
G E P FI KD + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 1800
G V R+ T D Y C A NSVG +++ + R D++P+
Sbjct: 62 GAVLRIQPLR-TPRDENVYECVAQNSVGEITVHAKLTV---LREDQLPSGF 108
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIWLKC----NDYNVLECSFSVLNLVEGNDYEF 1667
V W +GK + S+R T +F E G + ++ D NV EC
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDE-SAGAVLRIQPLRTPRDENVYEC--------------- 81
Query: 1668 RIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVP 1727
+A N++G+ T ++ + G P+ + + VV + T+ C A+G P P
Sbjct: 82 --VAQNSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 1728 KCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782
+ W ++ + +S R + +G L + D G Y C A NS G ++S
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETDQGKYECVATNSAGVRYSS 193
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 450 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 509
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 510 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 568
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 569 II 570
+
Sbjct: 198 YV 199
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 2057 FRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK 2116
+ AQN G + A +V +D + + P I + + + A C +G P
Sbjct: 79 YECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 2117 PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 2175
P I+W K + PSA + + + L I S D +Y C A N GV+ S+ A L
Sbjct: 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANL 197
Query: 2176 II 2177
+
Sbjct: 198 YV 199
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A+G P P+ W ++ + +S R + +G L + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA---LQIESSEETD 175
Query: 158 NGDYTCEAYNSVGFAHTS 175
G Y C A NS G ++S
Sbjct: 176 QGKYECVATNSAGVRYSS 193
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 2146
P I ++ + A F C TG PKP ++W K +++ I F E L
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 2147 INSVYG-VDADEYVCRAVNKGGVKSTKAELIIM 2178
I + D + Y C A N G + A+L ++
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIM 871
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+ ++
Sbjct: 45 TAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 104
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFEV 898
QL HP ++ L++ FED L+ EV
Sbjct: 105 KQLDHPNIMKLYEFFEDKGYFYLVGEV 131
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 67 NIVKLLDVIHTENKLYLVFEFLHQ 90
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIM 871
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+ ++
Sbjct: 44 TAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 103
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFEV 898
QL HP ++ L++ FED L+ EV
Sbjct: 104 KQLDHPNIMKLYEFFEDKGYFYLVGEV 130
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%)
Query: 581 RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDAS 640
+F + GE+V + TG TW + + I+ H VE SE + LTI A
Sbjct: 12 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAAR 71
Query: 641 NVDTAPYRVVAENDLGMDSAIVKIQISDRPDPP 673
Y ++ EN LG A V + + D+PDPP
Sbjct: 72 QEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 1204
D V AGE + +G T W ++ +K E SEN + +A R
Sbjct: 16 DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAA-RQEH 74
Query: 1205 SGSYTIQLVNTVGSDSASCKVYVVDKPSPPQG 1236
G YT+ + N +GS A + VVDKP PP G
Sbjct: 75 CGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE----LIRKEIDIMNQLH 875
D +DI +G G FG V+ RE++ I A K + S LEKE +R+EI+I + L
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQ-LEKEGVEHQLRREIEIQSHLR 72
Query: 876 HPKLINLHDAFEDDDEMVLIFEVLDR 901
HP ++ +++ F D + L+ E R
Sbjct: 73 HPNILRMYNYFHDRKRIYLMLEFAPR 98
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 539
P + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 575
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLI 2146
P + + ++ A+F C + G P P + W K + S I + E +L
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 2182
I+ V G D +Y C+AVN G + AEL++ T K
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGK 137
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFRL 148
KP F + D+ V G C+ G P P+ W ++ + ++++ G L
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 182
+EV D+ YTC+A NS+G A ++ + + T
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFRL 1755
KP F + D+ V G C+ G P P+ W ++ + ++++ G L
Sbjct: 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 100
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 1789
+EV D+ YTC+A NS+G A ++ + + T
Sbjct: 101 TISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 556 VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYR 612
+N V++ A L + K +V P F T +G GYP P++ W++
Sbjct: 18 INANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK 77
Query: 613 DNEVIESGGHFHVETSER-HAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
D+ ++ HF ++ E + LTI + D A Y A N LG + ++ +
Sbjct: 78 DDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 33/86 (38%)
Query: 1142 SIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKR 1201
+I DM V+ G G P P +W + + V + + E S
Sbjct: 47 TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVC 106
Query: 1202 ATDSGSYTIQLVNTVGSDSASCKVYV 1227
D YT + VN++G + + ++ V
Sbjct: 107 GDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 1414 IVEEQPNKPVMDLSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQ 1473
+ EE+P+ + D+ V G +P P WF +D+ + +S H Q
Sbjct: 33 VAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR---HFQ 89
Query: 1474 LTMN---SASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHSRLRTL 1516
+ + + SL + D +Y + N G T T + T+
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE----LIRKEID 869
K D +DI +G G FG V+ RE++ I A K + S LEKE +R+EI+
Sbjct: 9 KRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKS-QLEKEGVEHQLRREIE 67
Query: 870 IMNQLHHPKLINLHDAFEDDDEMVLIFEVLDR 901
I + L HP ++ +++ F D + L+ E R
Sbjct: 68 IQSHLRHPNILRMYNYFHDRKRIYLMLEFAPR 99
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 810 PVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIR 865
P+ K + +DI +G G FG V+ RER++ I A K + LEK +R
Sbjct: 2 PLGSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVL-FKTQLEKAGVEHQLR 60
Query: 866 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
+E++I + L HP ++ L+ F D + LI E
Sbjct: 61 REVEIQSHLRHPNILRLYGYFHDATRVYLILE 92
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 810 PVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIR 865
P+ K + +DI +G G FG V+ RER++ I A K + LEK +R
Sbjct: 2 PLGSKRQWTLEDFDIGRPLGKGKFGNVYLARERQSKFILALKVL-FKTQLEKAGVEHQLR 60
Query: 866 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
+E++I + L HP ++ L+ F D + LI E
Sbjct: 61 REVEIQSHLRHPNILRLYGYFHDATRVYLILE 92
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 206
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERWPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 207 YAGDQP---MEVSLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 1813
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERWPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 1814 YAGDQP---MEVSLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 558 KGG 560
+ G
Sbjct: 90 EYG 92
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 2165 KGG 2167
+ G
Sbjct: 90 EYG 92
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 535
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 2142
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 2143 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIM 871
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+ ++
Sbjct: 21 TAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 80
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFEV 898
QL HP ++ L++ FED L+ EV
Sbjct: 81 KQLDHPNIMKLYEFFEDKGYFYLVGEV 107
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 92 DFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 151
D +V KD+ +G+ +TL+C A G PVP RW + + S A + T+G V ++ FN
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSGAVLKI-FN 171
Query: 152 EVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
+ D G Y CEA N G +R+ +
Sbjct: 172 -IQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 1699 DFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 1758
D +V KD+ +G+ +TL+C A G PVP RW + + S A + T+G V ++ FN
Sbjct: 115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--EISTSGAVLKI-FN 171
Query: 1759 EVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
+ D G Y CEA N G +R+ +
Sbjct: 172 -IQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 13/162 (8%)
Query: 514 WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI-IMT 572
WL + + F L I +V D Y C + KS ++ I ++
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103
Query: 573 APKFNVPP-------RFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHV 625
P+ P +F+D Y G+NV ++ G P P I W + E + S
Sbjct: 104 IPERTTKPYPADIVVQFKDV-YALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA---- 158
Query: 626 ETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQIS 667
E S A+L I + D Y AEN G D +I +
Sbjct: 159 EISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 21 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 78
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 206
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 79 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 133
Query: 207 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 134 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 193
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 21 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 78
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 1813
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 79 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 133
Query: 1814 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 134 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 193
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 29 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 558 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 615
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 89 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 148
Query: 616 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGM 657
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 149 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 203
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 29 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 88
Query: 2165 KGG 2167
+ G
Sbjct: 89 EYG 91
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 12 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 71
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 72 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 104
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 535
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 118 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 177
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 2142
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 118 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 177
Query: 2143 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 206
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 207 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 1813
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 1814 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 22/178 (12%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 558 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 615
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 616 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGM 657
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 204
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 2165 KGG 2167
+ G
Sbjct: 90 EYG 92
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 535
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDT 2142
NA+ + + +F C + +P I W+K + P ++ + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEI 178
Query: 2143 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 179 EVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 558 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 612
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 95 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 613 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 656
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 657 M 657
+
Sbjct: 209 L 209
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 27 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 84
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEG--DNTKVKI---------F 206
G+YTC N G + + ++ + ++R P+ + G N V +
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV-----VERSPHRPILQAGLPANKTVALGSNVEFMCKV 139
Query: 207 YAGDQPMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 27 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 84
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEG--DNTKVKI---------F 1813
G+YTC N G + + ++ + ++R P+ + G N V +
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV-----VERSPHRPILQAGLPANKTVALGSNVEFMCKV 139
Query: 1814 YAGDQPMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 2165 KGG 2167
+ G
Sbjct: 95 EYG 97
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 148
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 1755
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 1132 PCAPKITS--DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 1189
P AP TS + + V A + P SG P+PT W NG E PD RI
Sbjct: 10 PVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVR 69
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
T + +D G+YT + N GS + + ++ VV++
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 110
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 497 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 543
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 2104 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 2150
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 2151 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 558 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 612
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 96 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 152
Query: 613 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 656
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 153 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 209
Query: 657 M 657
+
Sbjct: 210 L 210
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 85
Query: 158 NGDYTCEAYNSVGFAHTSSRVKI-----GTPPRIDRMPNALYIPEGDNTKVKI-FYAGDQ 211
G+YTC N G + + ++ + P +P + G N + Y+ Q
Sbjct: 86 KGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQ 145
Query: 212 PMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
P L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 146 PHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 23/175 (13%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 85
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKI-----GTPPRIDRMPNALYIPEGDNTKVKI-FYAGDQ 1818
G+YTC N G + + ++ + P +P + G N + Y+ Q
Sbjct: 86 KGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQ 145
Query: 1819 PMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
P L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 146 PHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C +G P+PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 36 KFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 95
Query: 2165 KGG 2167
+ G
Sbjct: 96 EYG 98
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 148
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 187
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 188 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 1755
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 128 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 187
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 188 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 1132 PCAPKITS--DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 1189
P AP TS + + V A + P SG P+PT W NG E PD RI
Sbjct: 11 PVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVR 70
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
T + +D G+YT + N GS + + ++ VV++
Sbjct: 71 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 111
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 497 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 543
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 192
Query: 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
DA EY C A N G+ A L ++ A
Sbjct: 193 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 222
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 2104 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 2150
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 133 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 192
Query: 2151 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
DA EY C A N G+ A L ++ A
Sbjct: 193 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 222
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A K I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L D ++++ L+FE
Sbjct: 62 NIVKLLDVIHTENKLYLVFE 81
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIM 871
T+ D Y +G G+FG V C+++ TG A K I V +KE + +E+ ++
Sbjct: 21 TAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 80
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFEV 898
QL HP + L++ FED L+ EV
Sbjct: 81 KQLDHPNIXKLYEFFEDKGYFYLVGEV 107
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 28/181 (15%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C +G P PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 558 K-GGVKSTKAELIIMTAPKFNV----PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR 612
+ G + T ++ +P + P + A G NV P+P I W +
Sbjct: 95 EYGSINHTYQLDVVERSPHRPILQAGLPANKTVAL---GSNVEFMCKVYSDPQPHIQWLK 151
Query: 613 -----------DN----EVIESGGHFHVETSERHA-ILTIRDASNVDTAPYRVVAENDLG 656
DN +++++ G V T+++ +L +R+ S D Y +A N +G
Sbjct: 152 HIEVNGSKIGPDNLPYVQILKTAG---VNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIG 208
Query: 657 M 657
+
Sbjct: 209 L 209
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 27 AVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 84
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEG--DNTKVKI---------F 206
G+YTC N G + + ++ + ++R P+ + G N V +
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV-----VERSPHRPILQAGLPANKTVALGSNVEFMCKV 139
Query: 207 YAGDQPMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP K + +C ++GTP P RWL+NG+E R Y+V A + + + V D
Sbjct: 27 AVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYA--TWSIIMDSVVPSD 84
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEG--DNTKVKI---------F 1813
G+YTC N G + + ++ + ++R P+ + G N V +
Sbjct: 85 KGNYTCIVENEYGSINHTYQLDV-----VERSPHRPILQAGLPANKTVALGSNVEFMCKV 139
Query: 1814 YAGDQPMEVSLTK---NGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP L NG + D+ +L + ++ ++ + EDAG+Y
Sbjct: 140 YSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C +G P PT+ WLK +E P R + T+++I++SV D Y C N
Sbjct: 35 KFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVEN 94
Query: 2165 KGG 2167
+ G
Sbjct: 95 EYG 97
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 148
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVE---TAG------GVFRL 1755
V LG + C+ P P +WL+ NG +I V+ TAG + L
Sbjct: 127 VALGSNVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVL 186
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
H V+ D G+YTC A NS+G +H S+ + +
Sbjct: 187 HLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 1132 PCAPKITS--DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 1189
P AP TS + + V A + P SG P PT W NG E PD RI
Sbjct: 10 PVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVR 69
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
T + +D G+YT + N GS + + ++ VV++
Sbjct: 70 YATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 110
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 497 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 543
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
Score = 33.9 bits (76), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 13/90 (14%)
Query: 2104 NAQFQCTITGCPKPTISWLK----GSREITPSARHHI---------FAEGDTYTLIINSV 2150
N +F C + P+P I WLK +I P ++ + + L + +V
Sbjct: 132 NVEFMCKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNV 191
Query: 2151 YGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
DA EY C A N G+ A L ++ A
Sbjct: 192 SFEDAGEYTCLAGNSIGLSHHSAWLTVLEA 221
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A I + E +EI ++ +L+HP
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 63 NIVKLLDVIHTENKLYLVFEFLHQ 86
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP 877
+++ +E+IG G +GVV++ R + TG + A I + E +EI ++ +L+HP
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L D ++++ L+FE L +
Sbjct: 62 NIVKLLDVIHTENKLYLVFEFLHQ 85
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 498 AQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYG-VDADEYVCRA 555
A F C TG PKP ++W K +++ I F E L I + D + Y C A
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 556 VNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKI 608
N G + A+L ++ P ++ P+ + ++ + +G P P+I
Sbjct: 84 QNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK---VVERTRTATMLCAASGNPDPEI 140
Query: 609 TWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 657
TW++D ++ R L I + D Y VA N G+
Sbjct: 141 TWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGV 189
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 32/188 (17%)
Query: 1612 VLWVSEGKSIGSERGSTAQFLEREVGGAIWLKC----NDYNVLECSFSVLNLVEGNDYEF 1667
V W +GK + S+R T +F E G + ++ D N+ EC
Sbjct: 38 VTWNKKGKKVNSQRFETIEFDE-SAGAVLRIQPLRTPRDENIYEC--------------- 81
Query: 1668 RIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVP 1727
+A N G+ T ++ + G P+ + + VV + T+ C A+G P P
Sbjct: 82 --VAQNPHGEVTVHAKLTVLREDQLPPG-FPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 1728 KCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR 1784
+ W ++ + +S R + +GG L + D G Y C A NS G ++S
Sbjct: 139 EITWFKDFLPVDPSTSNGRIKQLRSGG---LQIESSEETDQGKYECVASNSAGVRYSSPA 195
Query: 1785 ---VKIGT 1789
V++GT
Sbjct: 196 NLYVRVGT 203
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A+G P P+ W ++ + +S R + +GG L + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG---LQIESSEETD 175
Query: 158 NGDYTCEAYNSVGFAHTSSR---VKIGT 182
G Y C A NS G ++S V++GT
Sbjct: 176 QGKYECVASNSAGVRYSSPANLYVRVGT 203
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 142
G P FI D + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP 190
G V R+ T D Y C A N G +++ + R D++P
Sbjct: 62 GAVLRIQPLR-TPRDENIYECVAQNPHGEVTVHAKLTV---LREDQLP 105
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETA 1749
G P FI D + G + + C+ATG P P+ W + G++++S R+ E+A
Sbjct: 3 GESPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNS-QRFETIEFDESA 61
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP 1797
G V R+ T D Y C A N G +++ + R D++P
Sbjct: 62 GAVLRIQPLR-TPRDENIYECVAQNPHGEVTVHAKLTV---LREDQLP 105
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
+ A C +G P P I+W K + PS + + + L I S D +Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 554 RAVNKGGVK-STKAELIIMTAPK 575
A N GV+ S+ A L + K
Sbjct: 182 VASNSAGVRYSSPANLYVRVGTK 204
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160
+ A C +G P P I+W K + PS + + + L I S D +Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 2161 RAVNKGGVK-STKAELIIMTAPK 2182
A N GV+ S+ A L + K
Sbjct: 182 VASNSAGVRYSSPANLYVRVGTK 204
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYG-VDADEYVCRA 2162
A F C TG PKP ++W K +++ I F E L I + D + Y C A
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVA 83
Query: 2163 VNKGGVKSTKAELIIMTAPKFNVPPRF 2189
N G + A+L ++ + PP F
Sbjct: 84 QNPHGEVTVHAKLTVLREDQL--PPGF 108
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
P AS+ Q P + P P+R + A+ +C + G P P + W KG +++
Sbjct: 2 PMKASSGDQGSPPCFLRFPR---PVR---VVSGAEAELKCVVLGEPPPVVVWEKGGQQLA 55
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
S R A+G + L++ + DA YVCRA N G A + ++ P
Sbjct: 56 ASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
P AS+ Q P + P P+R + A+ +C + G P P + W KG +++
Sbjct: 2 PMKASSGDQGSPPCFLRFPR---PVR---VVSGAEAELKCVVLGEPPPVVVWEKGGQQLA 55
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
S R A+G + L++ + DA YVCRA N G A + ++ P
Sbjct: 56 ASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 37.4 bits (85), Expect = 0.095, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 44/106 (41%)
Query: 79 PVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYR 138
P+K G P F+ + + V G L+C G P P W + G+++++ R
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS 61
Query: 139 VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
G L D G Y C A N+ G A+ ++ V + PP
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 37.4 bits (85), Expect = 0.095, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 44/106 (41%)
Query: 1686 PVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYR 1745
P+K G P F+ + + V G L+C G P P W + G+++++ R
Sbjct: 2 PMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLS 61
Query: 1746 VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
G L D G Y C A N+ G A+ ++ V + PP
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 1130 APPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ET 1187
+PPC + R + V++G E + G P P +W G +++ R+ F +
Sbjct: 12 SPPCFLRFP-----RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 1188 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKP 1231
+E+ + +A TD+G Y + N G A+ V V++ P
Sbjct: 67 AEHGLLL---TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 12/99 (12%)
Query: 811 VDIKTSSVY-------DHYDIL--EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE- 860
VD+ T ++Y +++ IL +E+G G F VV +C + TG +AAKF+ +
Sbjct: 11 VDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQD 70
Query: 861 -KELIRKEIDIMNQLHH-PKLINLHDAFEDDDEMVLIFE 897
+ I EI ++ P++INLH+ +E+ E++LI E
Sbjct: 71 CRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILE 109
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 20 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 77
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRM------PNALYIPEGDNTKVKIFYAGDQ 211
G+YTC N G + + + + R + NA + GD V Y+ Q
Sbjct: 78 KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 137
Query: 212 PMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
P + KNG D VL + +++I+ + EDAG+Y
Sbjct: 138 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 192
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 20 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 77
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRM------PNALYIPEGDNTKVKIFYAGDQ 1818
G+YTC N G + + + + R + NA + GD V Y+ Q
Sbjct: 78 KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 137
Query: 1819 PMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
P + KNG D VL + +++I+ + EDAG+Y
Sbjct: 138 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 192
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 22/178 (12%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 28 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 558 KGGVKSTKAELIIMTAPKFN--VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 615
+ G + L ++ + + A G +V +P I W + E
Sbjct: 88 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 147
Query: 616 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGM 657
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 148 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 202
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 28 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 87
Query: 2165 KGG 2167
+ G
Sbjct: 88 EYG 90
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 11 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 70
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 71 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 103
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 534
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 117 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 175
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 176 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 2141
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 117 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 175
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 176 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRM------PNALYIPEGDNTKVKIFYAGDQ 211
G+YTC N G + + + + R + NA + GD V Y+ Q
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 212 PMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
P + KNG D VL + +++I+ + EDAG+Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 79
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRM------PNALYIPEGDNTKVKIFYAGDQ 1818
G+YTC N G + + + + R + NA + GD V Y+ Q
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 1819 PMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
P + KNG D VL + +++I+ + EDAG+Y
Sbjct: 140 PHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 22/178 (12%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 558 KGGVKSTKAELIIMTAPKFN--VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 615
+ G + L ++ + + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 616 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGM 657
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 204
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 30 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 89
Query: 2165 KGG 2167
+ G
Sbjct: 90 EYG 92
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 72
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 534
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 177
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR---------EITPSARHHIFAEGD 2141
NA+ + + +F C + +P I W+K GS+ ++ +A + + +
Sbjct: 119 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT-TDKE 177
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V DA EY C A N G+ A L ++ AP
Sbjct: 178 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH--WSLIXESVVPSD 79
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 206
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 207 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 254
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P P RWL+NG+E R Y+V + L V D
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH--WSLIXESVVPSD 79
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 1813
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 80 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 134
Query: 1814 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL---------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP + KNG D VL + +++I+ + EDAG+Y
Sbjct: 135 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEY 194
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T R V A P G P PT W NG E + RI NQ
Sbjct: 13 TEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX 72
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 105
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 22/178 (12%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 30 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 558 K-GGVKSTKAELIIMTAPKFNV-PPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNE 615
+ G + T ++ +P + A G +V +P I W + E
Sbjct: 90 EYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVE 149
Query: 616 ---------------VIESGGHFHVETSERH-AILTIRDASNVDTAPYRVVAENDLGM 657
V+++ G V T+++ +L IR+ + D Y +A N +G+
Sbjct: 150 KNGSKYGPDGLPYLKVLKAAG---VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI 204
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 30 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 89
Query: 2165 KGG 2167
+ G
Sbjct: 90 EYG 92
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQLHH 876
D Y ++++G+GA+G V C+++ TG A K I V+ + E+ ++ QL H
Sbjct: 21 DRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDH 80
Query: 877 PKLINLHDAFEDDDEMVLIFEV 898
P ++ L++ FED L+ EV
Sbjct: 81 PNIMKLYEFFEDKRNYYLVMEV 102
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 86 VGGEKPDFIVP---LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA 142
V P F+ P +V G L L+C A+G P P W + G ++ S + + E
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-KAKFENF 273
Query: 143 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTK 202
R+ V++ D+G+Y C A N +G + V++ P P L + G++ +
Sbjct: 274 NKALRI--TNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGR 331
Query: 203 VKIFYAGDQPMEVSLTKNGRVVQS 226
+ G+ V NG +QS
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQS 355
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 6/144 (4%)
Query: 1693 VGGEKPDFIVP---LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA 1749
V P F+ P +V G L L+C A+G P P W + G ++ S + + E
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-KAKFENF 273
Query: 1750 GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTK 1809
R+ V++ D+G+Y C A N +G + V++ P P L + G++ +
Sbjct: 274 NKALRI--TNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGR 331
Query: 1810 VKIFYAGDQPMEVSLTKNGRVVQS 1833
+ G+ V NG +QS
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQS 355
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 9/148 (6%)
Query: 476 MAAKAPEIIVPLRNANA---IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE 532
+A + P + P A++ ++ + +C +G P P I+W K ++ PS + E
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKF--E 271
Query: 533 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGE 592
L I +V D+ EY C A NK G + + AP + P+ GE
Sbjct: 272 NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPK---NLILAPGE 328
Query: 593 NVVVKIPFTGYPKPKITWYRDNEVIESG 620
+ + G PKP + W + E ++S
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 95/237 (40%), Gaps = 29/237 (12%)
Query: 449 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAI---QNHNAQFQCTIT 505
E++ +A+N+ G +L SN ++++ +K+P + P N + + + QC
Sbjct: 91 EYQCFARNKFGTAL----SNRIRLQ---VSKSP--LWPKENLDPVVVQEGAPLTLQCNPP 141
Query: 506 -GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRA-------- 555
G P P I W+ S E P + ++G L ++V D +Y C A
Sbjct: 142 PGLPSPVIFWMSSSME--PITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTI 199
Query: 556 --VNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD 613
N +K + P F P + +G +++++ +G P P I WY+
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259
Query: 614 NEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 670
+ S + + L I + S D+ Y +A N +G + +++ P
Sbjct: 260 GGDLPSD---KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGR--EISSGARYRVETAGGVFRLHFNEVTD 155
KD +V + ++CEA G P P W RN R I+ R + G + F
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 156 VD--NGDYTCEAYNSVGFAHTSSRVKI 180
+ G+Y C A N G A S+R+++
Sbjct: 85 PEEYEGEYQCFARNKFGTA-LSNRIRL 110
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGR--EISSGARYRVETAGGVFRLHFNEVTD 1762
KD +V + ++CEA G P P W RN R I+ R + G + F
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 1763 VD--NGDYTCEAYNSVGFAHTSSRVKI 1787
+ G+Y C A N G A S+R+++
Sbjct: 85 PEEYEGEYQCFARNKFGTA-LSNRIRL 110
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 2083 MAAKAPEIIVPLRNANA---IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE 2139
+A + P + P A++ ++ + +C +G P P I+W K ++ PS + E
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDL-PSDKAKF--E 271
Query: 2140 GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
L I +V D+ EY C A NK G + + AP
Sbjct: 272 NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDAD----EYV 552
N +C G P P+ W + SR + + + TL+I+ G + EY
Sbjct: 34 NILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQ 93
Query: 553 CRAVNKGGVK-STKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKI-PFTGYPKPKITW 610
C A NK G S + L + +P + P D +G + ++ P G P P I W
Sbjct: 94 CFARNKFGTALSNRIRLQVSKSPLW--PKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFW 151
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 88 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVET-AGGVF 146
G +P F+ DL V GKL + C+ +G P P W +G+ + + +++ GV
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVG 170
L VT D G YTC A N G
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAG 90
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 1695 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVET-AGGVF 1753
G +P F+ DL V GKL + C+ +G P P W +G+ + + +++ GV
Sbjct: 7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVG 1777
L VT D G YTC A N G
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAG 90
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 498 AQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAV 556
+ C ++G P P +SW + + P + H + E ++LII V DA Y C A
Sbjct: 27 CRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT 86
Query: 557 NKGGVKSTKAELII 570
N+ G S EL++
Sbjct: 87 NRAGQNSFSLELVV 100
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAV 2163
+ C ++G P P +SW + + P + H + E ++LII V DA Y C A
Sbjct: 27 CRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT 86
Query: 2164 NKGGVKSTKAELII 2177
N+ G S EL++
Sbjct: 87 NRAGQNSFSLELVV 100
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 1204
D+TV G+ + SG P P W ++G V PD K EN + D
Sbjct: 18 DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRD 77
Query: 1205 SGSYTIQLVNTVGSDSASCKVYVVDKPSPP 1234
+G YT N G +S S ++ V K S P
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVAAKESGP 107
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 488 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 547
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 548 ADEYVCRAVNKGGVKSTKAELIIMTAP 574
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 2154
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 2155 ADEYVCRAVNKGGVKSTKAELIIMTAP 2181
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 37.4 bits (85), Expect = 0.084, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 88 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR 147
G P F+ + + V G L+C G P P W + G+++++ R G
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
L D G Y C A N+ G A+ ++ V + PP
Sbjct: 72 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 37.4 bits (85), Expect = 0.084, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 1695 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR 1754
G P F+ + + V G L+C G P P W + G+++++ R G
Sbjct: 12 GSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
L D G Y C A N+ G A+ ++ V + PP
Sbjct: 72 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 1130 APPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ET 1187
+PPC + R + V++G E + G P P +W G +++ R+ F +
Sbjct: 13 SPPCFLR-----RPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 1188 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 1232
+E+ + +A TD+G Y + N G A+ V V++ P+
Sbjct: 68 AEHGLLL---TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 488 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 547
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 548 ADEYVCRAVNKGGVKSTKAELIIMTAP 574
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 2154
R + A+ +C + G P P + W KG +++ S R A+G + L++ + D
Sbjct: 22 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTD 81
Query: 2155 ADEYVCRAVNKGGVKSTKAELIIMTAP 2181
A YVCRA N G A + ++ P
Sbjct: 82 AGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 88 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR 147
G P F+ + + V G L+C G P P W + G+++++ R G
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
L D G Y C A N+ G A+ ++ V + PP
Sbjct: 72 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 37.0 bits (84), Expect = 0.13, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%)
Query: 1695 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR 1754
G P F+ + + V G L+C G P P W + G+++++ R G
Sbjct: 12 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 71
Query: 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
L D G Y C A N+ G A+ ++ V + PP
Sbjct: 72 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 1130 APPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKF--ET 1187
+PPC + R + V++G E + G P P +W G +++ R+ F +
Sbjct: 13 SPPCFLRFP-----RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 1188 SENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPS 1232
+E+ + +A TD+G Y + N G A+ V V++ P+
Sbjct: 68 AEHGLLL---TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 17/172 (9%)
Query: 498 AQFQCTITGCPKPTISWLKGSREITPSARHHI--FAEGDTYTLIINSVYG-VDADEYVCR 554
A F C TG P+P I W K ++++ + R + F +G L I + D Y C
Sbjct: 24 ASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV 82
Query: 555 AVNKGGVKSTKAELIIMTA-------PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPK 607
A N G S L ++ P ++ P+ + ++ + +G P P+
Sbjct: 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK---VVERTRTATMLCAASGNPDPE 139
Query: 608 ITWYRDNEVIESG---GHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
ITW++D +++ G SE L I + D Y VA N G
Sbjct: 140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGVFRLHFNEVTDVDNGD 160
G + + C+ATG P PK W + G+++S+ R+ V + +G V R+ T D
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSN-QRFEVIEFDDGSGSVLRIQPLR-TPRDEAI 78
Query: 161 YTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 193
Y C A N+VG S+R+ + R D++P
Sbjct: 79 YECVASNNVGEISVSTRLTV---LREDQIPRGF 108
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGVFRLHFNEVTDVDNGD 1767
G + + C+ATG P PK W + G+++S+ R+ V + +G V R+ T D
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSN-QRFEVIEFDDGSGSVLRIQPLR-TPRDEAI 78
Query: 1768 YTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNAL 1800
Y C A N+VG S+R+ + R D++P
Sbjct: 79 YECVASNNVGEISVSTRLTV---LREDQIPRGF 108
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 157
VV + T+ C A+G P P+ W ++ + ++ R + + + L + + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 158 NGDYTCEAYNSVGFAHTS 175
G Y C A NS G +++
Sbjct: 179 QGKYECVATNSAGTRYSA 196
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREI---SSGARYRVETAGGVFRLHFNEVTDVD 1764
VV + T+ C A+G P P+ W ++ + ++ R + + + L + + D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 1765 NGDYTCEAYNSVGFAHTS 1782
G Y C A NS G +++
Sbjct: 179 QGKYECVATNSAGTRYSA 196
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 877
+ +Y + IG G++G V ++ T AAK IP + + ++EI+IM L HP
Sbjct: 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHP 66
Query: 878 KLINLHDAFEDDDEMVLIFEV 898
+I L++ FED+ ++ L+ E+
Sbjct: 67 NIIRLYETFEDNTDIYLVMEL 87
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHP 877
+ +Y + IG G++G V ++ T AAK IP + + ++EI+IM L HP
Sbjct: 24 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHP 83
Query: 878 KLINLHDAFEDDDEMVLIFEV 898
+I L++ FED+ ++ L+ E+
Sbjct: 84 NIIRLYETFEDNTDIYLVMEL 104
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 813 IKTSSVYDHYDI-LEE--IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID 869
+K S Y HYD+ L++ +G G+F + +C +K+ FA K I S +E +KEI
Sbjct: 1 MKDSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKII--SKRMEAN-TQKEIT 57
Query: 870 IMNQLH-HPKLINLHDAFEDDDEMVLIFEVLD 900
+ HP ++ LH+ F D L+ E+L+
Sbjct: 58 ALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN 89
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMN 872
++T+++ + +E +G+GAF V ++R TG +FA K I S + EI ++
Sbjct: 2 MQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLK 61
Query: 873 QLHHPKLINLHDAFEDDDEMVLIFEVL 899
++ H ++ L D +E L+ +++
Sbjct: 62 KIKHENIVTLEDIYESTTHYYLVMQLV 88
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 804 SKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE- 862
S + Q DIK ++ E +GTGAF V E+ TG +FA K IP KE
Sbjct: 11 SSWKKQAEDIKKI-----FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKES 65
Query: 863 LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
I EI ++ ++ H ++ L D +E + + L+ +++
Sbjct: 66 SIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLV 102
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI----RKEIDIMNQ 873
+ + Y LE++G G +GVV++ ++ + G I A K I + + E E I +EI ++ +
Sbjct: 19 LMEKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRL--DAEDEGIPSTAIREISLLKE 75
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDR 901
LHHP +++L D + + L+FE +++
Sbjct: 76 LHHPNIVSLIDVIHSERCLTLVFEFMEK 103
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRK------EIDIMNQLHHPK 878
++IG G FG+VH+ R K ++ A K I E E+I K E+ IM+ L+HP
Sbjct: 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84
Query: 879 LINLHDAFEDDDEMVLIF--------EVLDRPHPPE-----NLHADEFAGDSLTLYWTPP 925
++ L+ + MV+ F +LD+ HP + L D G PP
Sbjct: 85 IVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTT 957
+ N ++ D N+ V KV+ + T+
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGTS 176
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y+I+ +G G+FG V +C++R T +A K I + N + I +E++++ +L HP
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHP 81
Query: 878 KLINLHDAFEDDDEMVLIFEV 898
++ L + ED ++ E+
Sbjct: 82 NIMKLFEILEDSSSFYIVGEL 102
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 7/88 (7%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELI----RKEIDIMNQ 873
+ + Y LE++G G +GVV++ ++ + G I A K I + + E E I +EI ++ +
Sbjct: 19 LMEKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRL--DAEDEGIPSTAIREISLLKE 75
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDR 901
LHHP +++L D + + L+FE +++
Sbjct: 76 LHHPNIVSLIDVIHSERCLTLVFEFMEK 103
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y+I+ +G G+FG V +C++R T +A K I + N + I +E++++ +L HP
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHP 81
Query: 878 KLINLHDAFEDDDEMVLIFEV 898
++ L + ED ++ E+
Sbjct: 82 NIMKLFEILEDSSSFYIVGEL 102
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQLHH 876
D Y ++++G+GA+G V C+++ TG A K I V+ + E+ ++ QL H
Sbjct: 4 DRYQRVKKLGSGAYGEVLLCKDKLTGAERAIKIIKKSSVTTTSNSGALLDEVAVLKQLDH 63
Query: 877 PKLINLHDAFEDDDEMVLIFEV 898
P ++ L++ FED L+ EV
Sbjct: 64 PNIMKLYEFFEDKRNYYLVMEV 85
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
++I+ E+G GAFG V++ + ++TG + AAK I E E EI+I+ HP ++
Sbjct: 21 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80
Query: 882 LHDAFEDDDEMVLIFE 897
L A+ D ++ ++ E
Sbjct: 81 LLGAYYHDGKLWIMIE 96
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 14/199 (7%)
Query: 571 MTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE--TS 628
M APK P Y +G V + YP I+W+RD +++ S + +++ +
Sbjct: 17 MYAPKLQGPV----AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT 72
Query: 629 ERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLAL 688
+ L + S D Y A N +G +S + +D P P VE + S A
Sbjct: 73 PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEP--YSSTAQ 130
Query: 689 V-WRAPIWDGGSNITNYIVEKR----EHPMSSWIRVGNTRFT-TMAITGLSPGHQYEFRV 742
V + P GG I Y E R E S W + I GL P Y R+
Sbjct: 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL 190
Query: 743 YAENVYGRSDPSTTSDLIT 761
A N G + S S+ T
Sbjct: 191 AALNGKGLGEISAASEFKT 209
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQ 1191
APK+ +++ G + IT P T W +G + S IK + +
Sbjct: 19 APKLQGPVAVY---TWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 1192 TIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLS 1251
+ Y + D G+Y VN +G +S + D PS P +D + + +
Sbjct: 76 S-YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS--IDQVEPYSSTAQVQ 132
Query: 1252 WKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYD----VFGLETNRQYRFRVRA 1307
+ P GG PI Y E W + + + + GL+ Y R+ A
Sbjct: 133 FDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAA 192
Query: 1308 ENQYGVSE 1315
N G+ E
Sbjct: 193 LNGKGLGE 200
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
++I+ E+G GAFG V++ + ++TG + AAK I E E EI+I+ HP ++
Sbjct: 13 WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 72
Query: 882 LHDAFEDDDEMVLIFE 897
L A+ D ++ ++ E
Sbjct: 73 LLGAYYHDGKLWIMIE 88
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE------LIRKEIDIMNQ 873
+ Y LE+IG G +GVV++ + G FA K I LEKE +EI I+ +
Sbjct: 2 EKYHGLEKIGEGTYGVVYKA-QNNYGETFALKKI----RLEKEDEGIPSTTIREISILKE 56
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDR 901
L H ++ L+D +VL+FE LD+
Sbjct: 57 LKHSNIVKLYDVIHTKKRLVLVFEHLDQ 84
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE------LIRKEIDIMNQ 873
+ Y LE+IG G +GVV++ + G FA K I LEKE +EI I+ +
Sbjct: 2 EKYHGLEKIGEGTYGVVYKA-QNNYGETFALKKI----RLEKEDEGIPSTTIREISILKE 56
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDR 901
L H ++ L+D +VL+FE LD+
Sbjct: 57 LKHSNIVKLYDVIHTKKRLVLVFEHLDQ 84
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y+I+ +G G+FG V +C++R T +A K I + N + I +E++++ +L HP
Sbjct: 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHP 81
Query: 878 KLINLHDAFEDDDEMVLIFEV 898
++ L + ED ++ E+
Sbjct: 82 NIMKLFEILEDSSSFYIVGEL 102
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE------LIRKEIDIMNQ 873
+ Y LE+IG G +GVV++ + G FA K I LEKE +EI I+ +
Sbjct: 2 EKYHGLEKIGEGTYGVVYKA-QNNYGETFALKKI----RLEKEDEGIPSTTIREISILKE 56
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDR 901
L H ++ L+D +VL+FE LD+
Sbjct: 57 LKHSNIVKLYDVIHTKKRLVLVFEHLDQ 84
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA-GGVFRLH 149
P F V L D V G+ + + G P P WLRN + + R E A GG+ RL
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
D G YTC+A N G +R+++
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA-GGVFRLH 1756
P F V L D V G+ + + G P P WLRN + + R E A GG+ RL
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLR 65
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
D G YTC+A N G +R+++
Sbjct: 66 ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 1130 APPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSE 1189
APP T +S+ D +V G++ +++ G PKP W N V PD R E +E
Sbjct: 4 APP-----TFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 1190 NQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
A D+G YT + VN G+ ++ V
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 477 AAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGD 534
+KAP V L + + + + + G PKP +SWL+ + + P R AEG
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 568
L I + DA Y C+AVN+ G + +A L
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 2084 AAKAPEII-VPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGD 2141
+KAP V L + + + + + G PKP +SWL+ + + P R AEG
Sbjct: 1 GSKAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175
L I + DA Y C+AVN+ G + +A L
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Score = 32.3 bits (72), Expect = 3.4, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 579 PPRFRDTAYFDK----GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI- 633
PP F+ + D+ G++V++ I G PKP ++W R+ + + E +E
Sbjct: 5 PPTFK-VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 634 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
L I A D Y A N+ G ++++
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 1135 PKITSDLSIR---DMTVLAGEEFTITVPFSGRPKPTPIW--------------------- 1170
PKI D R + V+AG + + VP SG P PT IW
Sbjct: 14 PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 73
Query: 1171 TVNGDE--------VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSAS 1222
T + DE +GR++ ET+++++I+ + A++ D G YT+ + N VG D +
Sbjct: 74 TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVN 132
Query: 1223 CKVYVVD 1229
V V+D
Sbjct: 133 LTVKVID 139
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 1456 WFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFDTATLHSRL 1513
W + ++ +++ RV + T + + V+ +++ D G Y + +KNP G D L ++
Sbjct: 80 WVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLH 875
+ ++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L
Sbjct: 34 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLR 92
Query: 876 HPKLINLHDAFEDDDEMVLIFE 897
HP ++ L+ F D + LI E
Sbjct: 93 HPNILRLYGYFHDATRVYLILE 114
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEI 868
+K + ++I +G G FG V+ RE+++ I A K + LEK +R+E+
Sbjct: 1 MKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREV 59
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
+I + L HP ++ L+ F D + LI E
Sbjct: 60 EIQSHLRHPNILRLYGYFHDATRVYLILE 88
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 15 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L+ F D + LI E R
Sbjct: 74 NILRLYGYFHDATRVYLILEYAPR 97
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 11 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 70 NILRLYGYFHDATRVYLILE 89
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 656 GMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS 715
G A + +S PD P P + + +SL L W+AP D GS I N+++E E
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGK--- 59
Query: 716 WIRVGNTRFT--------TMAITGLSPGHQYEFRVYAENVYGRS 751
GN F IT LSP +FR+ A N YG S
Sbjct: 60 ----GNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTS 99
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 1229 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRS- 1287
D P+PP+ +++ T S +L WK P D+ GS I N+V+E ++ G ++ S
Sbjct: 19 DIPNPPR----IANRTKNSLTLQWKAPSDN-GSKIQNFVLE-WDEGKGNGEFCQCYMGSQ 72
Query: 1288 PAYDVFGLETNRQYRFRVRAENQYGVS 1314
+ + L +FR+ A N YG S
Sbjct: 73 KQFKITKLSPAMGCKFRLSARNDYGTS 99
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 895 IFEVL----DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTK 950
IF L D P+PP + + +SLTL W P DN GS+I N+V+E +
Sbjct: 10 IFTTLSCEPDIPNPPRIANRTK---NSLTLQWKAPSDN-GSKIQNFVLEWDEGKGNGEFC 65
Query: 951 VSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLS 984
+ ++ L+ +FR+ A N YG S
Sbjct: 66 QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTS 99
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1332 PDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGY 1366
PD P P+I + N+ TL W P +D GSKIQ +
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNF 51
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 36 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 94
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 95 NILRLYGYFHDATRVYLILE 114
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 15 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFEVLDR 901
++ L+ F D + LI E R
Sbjct: 74 NILRLYGYFHDATRVYLILEYAPR 97
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 15 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 74 NILRLYGYFHDATRVYLILE 93
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 12 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 70
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 71 NILRLYGYFHDATRVYLILE 90
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 14 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 72
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 73 NILRLYGYFHDATRVYLILE 92
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 15 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 74 NILRLYGYFHDATRVYLILE 93
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 12 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 70
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 71 NILRLYGYFHDATRVYLILE 90
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 11 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 70 NILRLYGYFHDATRVYLILE 89
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 11 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 69
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 70 NILRLYGYFHDATRVYLILE 89
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 9 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 67
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 68 NILRLYGYFHDATRVYLILE 87
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRK------EIDIMNQLHHPK 878
++IG G FG+VH+ R K ++ A K I E E+I K E+ IM+ L+HP
Sbjct: 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84
Query: 879 LINLHDAFEDDDEMVLIF--------EVLDRPHPPE-----NLHADEFAGDSLTLYWTPP 925
++ L+ + MV+ F +LD+ HP + L D G PP
Sbjct: 85 IVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSY 954
+ N ++ D N+ V KV+ +
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADF 173
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 539
A I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELII 570
I+SV D Y N G + + L I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 2146
A I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELII 2177
I+SV D Y N G + + L I
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVD 157
+ + V G+ C+ G PVP WLR G+ +S+ AR++V T + V D
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 81
Query: 158 NGDYTCEAYNSVG 170
G+Y+ NS G
Sbjct: 82 EGNYSVVVENSEG 94
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVD 1764
+ + V G+ C+ G PVP WLR G+ +S+ AR++V T + V D
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 81
Query: 1765 NGDYTCEAYNSVG 1777
G+Y+ NS G
Sbjct: 82 EGNYSVVVENSEG 94
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 590 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 649
+GE+ G P P +TW R +V+ + V T++ + I D Y V
Sbjct: 28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87
Query: 650 VAENDLGMDSAIVKIQI 666
V EN G A + I
Sbjct: 88 VVENSEGKQEAEFTLTI 104
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 1144 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 1203
R MTV GE + G P PT W G +S R + T++ ++ + S + A+
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ-AS 80
Query: 1204 DSGSYTIQLVNTVGSDSA 1221
D G+Y++ + N+ G A
Sbjct: 81 DEGNYSVVVENSEGKQEA 98
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 15 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 74 NILRLYGYFHDATRVYLILE 93
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRK------EIDIMNQLHHPK 878
++IG G FG+VH+ R K ++ A K I E E+I K E+ IM+ L+HP
Sbjct: 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84
Query: 879 LINLHDAFEDDDEMVLIF--------EVLDRPHPPE-----NLHADEFAGDSLTLYWTPP 925
++ L+ + MV+ F +LD+ HP + L D G PP
Sbjct: 85 IVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSY 954
+ N ++ D N+ V KV+ +
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADF 173
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 27 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 85
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 86 NILRLYGYFHDATRVYLILE 105
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDATRVYLILE 88
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + + T +FA K +P S L +KE + EI I L +P ++ H
Sbjct: 50 LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 885 AFEDDDEMVLIFEVLDR 901
FEDDD + ++ E+ R
Sbjct: 110 FFEDDDFVYVVLEICRR 126
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMN 872
T V D Y+I+E IG GA+GVV R R TG A K IP + ++ R +E+ I+
Sbjct: 50 TFDVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILK 109
Query: 873 QLHHPKLINLHD 884
H +I + D
Sbjct: 110 HFKHDNIIAIKD 121
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+ + I A K + LEK +R+E++I + L HP
Sbjct: 10 FEIGRPLGKGKFGNVYLAREKNSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 69 NILRLYGYFHDSTRVYLILE 88
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + + T +FA K +P S L +KE + EI I L +P ++ H
Sbjct: 50 LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 885 AFEDDDEMVLIFEVLDR 901
FEDDD + ++ E+ R
Sbjct: 110 FFEDDDFVYVVLEICRR 126
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + + T +FA K +P S L +KE + EI I L +P ++ H
Sbjct: 50 LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 109
Query: 885 AFEDDDEMVLIFEVLDR 901
FEDDD + ++ E+ R
Sbjct: 110 FFEDDDFVYVVLEICRR 126
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 464 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 257
Query: 523 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 577
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 258 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 317
Query: 578 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 637
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 318 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 364
Query: 638 DASNVDTAPYRVVAENDLGMDSAIVKIQI 666
D Y+ ND A ++++
Sbjct: 365 SVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEV 153
K L + + ++L C A G P P RW + R+ + RV+ G L +
Sbjct: 226 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDA 283
Query: 154 TDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPM 213
D+G Y C NSVG + + + P P + G Y G+
Sbjct: 284 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 343
Query: 214 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
VS K+G+ + + ++ I+ ++KED G Y
Sbjct: 344 TVSWMKDGKAIGHSES----------VLRIESVKKEDKGMY 374
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEV 1760
K L + + ++L C A G P P RW + R+ + RV+ G L +
Sbjct: 226 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDA 283
Query: 1761 TDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPM 1820
D+G Y C NSVG + + + P P + G Y G+
Sbjct: 284 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 343
Query: 1821 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
VS K+G+ + + ++ I+ ++KED G Y
Sbjct: 344 TVSWMKDGKAIGHSES----------VLRIESVKKEDKGMY 374
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 86 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 134
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 299 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358
Query: 135 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181
+ R+E+ V D G Y C N A S+ +K+G
Sbjct: 359 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 394
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 1693 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 1741
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 299 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358
Query: 1742 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 1788
+ R+E+ V D G Y C N A S+ +K+G
Sbjct: 359 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 394
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 2071 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 257
Query: 2130 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
+ R D + TLII D+ +Y+C N G +S + L + TAP
Sbjct: 258 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV-TAP 313
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE+++ I A K + LEK +R+E++I + L HP
Sbjct: 13 FEIGRPLGKGKFGNVYLAREKQSKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 71
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 72 NILRLYGYFHDATRVYLILE 91
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 22/209 (10%)
Query: 464 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 251
Query: 523 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFN 577
+ R D + TLII D+ +Y+C N G +S + L +
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 311
Query: 578 VPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 637
+ P T D G V +TG P ++W +D + I GH ++L I
Sbjct: 312 IDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH-------SESVLRIE 358
Query: 638 DASNVDTAPYRVVAENDLGMDSAIVKIQI 666
D Y+ ND A ++++
Sbjct: 359 SVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEV 153
K L + + ++L C A G P P RW + R+ + RV+ G L +
Sbjct: 220 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDA 277
Query: 154 TDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPM 213
D+G Y C NSVG + + + P P + G Y G+
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 214 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
VS K+G+ + + ++ I+ ++KED G Y
Sbjct: 338 TVSWMKDGKAIGHSES----------VLRIESVKKEDKGMY 368
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 16/161 (9%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEV 1760
K L + + ++L C A G P P RW + R+ + RV+ G L +
Sbjct: 220 KPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDA 277
Query: 1761 TDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPM 1820
D+G Y C NSVG + + + P P + G Y G+
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 1821 EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
VS K+G+ + + ++ I+ ++KED G Y
Sbjct: 338 TVSWMKDGKAIGHSES----------VLRIESVKKEDKGMY 368
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 86 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 134
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 293 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 135 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181
+ R+E+ V D G Y C N A S+ +K+G
Sbjct: 353 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 388
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 1693 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 1741
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 293 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 1742 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 1788
+ R+E+ V D G Y C N A S+ +K+G
Sbjct: 353 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 388
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 10/117 (8%)
Query: 2071 SSASNSVQIKDPMAAKAPEIIVPLRN-ANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
S+ + I +P+++ AP ++ + H C G P P+ W K I
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKF---IE 251
Query: 2130 PSARHHIFAEGD-----TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
+ R D + TLII D+ +Y+C N G +S + L + TAP
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV-TAP 307
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + + T +FA K +P S L +KE + EI I L +P ++ H
Sbjct: 34 LGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFHG 93
Query: 885 AFEDDDEMVLIFEVLDR 901
FEDDD + ++ E+ R
Sbjct: 94 FFEDDDFVYVVLEICRR 110
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH-----------NLEK- 861
K + + Y + ++G+GA+G V C+E+ + A K I S N+EK
Sbjct: 30 KEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKF 89
Query: 862 -ELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
E I EI ++ L HP +I L D FED L+ E
Sbjct: 90 HEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTE 126
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig
18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig
18'), Nmr, 30 Structures
Length = 93
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 1135 PKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV--NGDEVSPDGRIKFETSENQT 1192
PKI + + R + + AG + V F G P PT WTV +G ++P+ + ++S
Sbjct: 3 PKILT--ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 1193 IYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
+ SAKRA DSG+Y +++ N +G D A +V V
Sbjct: 61 FF--PSAKRA-DSGNYKLKVKNELGEDEAIFEVIV 92
Score = 44.7 bits (104), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 1426 LSGVRDITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMN----SASL 1481
L+ R I +KAG ++ V F+ P P A W + DS + +L ++ + S+
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTATW-----TVGDSGAALAPELLVDAKSSTTSI 60
Query: 1482 VVKNSQRSDGGQYRLQLKNPAGFDTA 1507
+++R+D G Y+L++KN G D A
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEA 86
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP----VSHNLEKELIRKEIDI 870
T V D Y+I+E IG GA+GVV R R TG A K IP V N ++ L +E+ I
Sbjct: 49 TFDVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTL--RELKI 106
Query: 871 MNQLHHPKLINLHD 884
+ H +I + D
Sbjct: 107 LKHFKHDNIIAIKD 120
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 539
+ I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELII 570
I+SV D Y N G + + L I
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 2146
+ I+ R+ + +A+F C G P PT++WL+ + ++ SARH + T
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELII 2177
I+SV D Y N G + + L I
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEFTLTI 98
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVD 157
+ + V G+ C+ G PVP WLR G+ +S+ AR++V T + V D
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 75
Query: 158 NGDYTCEAYNSVG 170
G+Y+ NS G
Sbjct: 76 EGNYSVVVENSEG 88
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVD 1764
+ + V G+ C+ G PVP WLR G+ +S+ AR++V T + V D
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASD 75
Query: 1765 NGDYTCEAYNSVG 1777
G+Y+ NS G
Sbjct: 76 EGNYSVVVENSEG 88
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 1144 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 1203
R MTV GE + G P PT W G +S R + T++ ++ + S + A+
Sbjct: 16 RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ-AS 74
Query: 1204 DSGSYTIQLVNTVGSDSA 1221
D G+Y++ + N+ G A
Sbjct: 75 DEGNYSVVVENSEGKQEA 92
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 590 KGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRV 649
+GE+ G P P +TW R +V+ + V T++ + I D Y V
Sbjct: 22 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 81
Query: 650 VAENDLGMDSAIVKIQI 666
V EN G A + I
Sbjct: 82 VVENSEGKQEAEFTLTI 98
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-----KELIRKEIDIMNQLHH 876
Y + IG G++GVV E +T I A K + + + E I+ E+ +M +LHH
Sbjct: 28 YHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHH 87
Query: 877 PKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDS 917
P + L++ +ED+ + L+ E+ H + L+ F DS
Sbjct: 88 PNIARLYEVYEDEQYICLVMELCHGGHLLDKLNV--FIDDS 126
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDIMNQLH 875
++ D + ++G+GAFG VH ER +G K I + + E I EI+++ L
Sbjct: 19 TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLD 78
Query: 876 HPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLT 919
HP +I + + FED M ++ E + E + + + G +L+
Sbjct: 79 HPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALS 122
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 20 DCYIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTP 79
D Y++E G W+ N V C F+V +L G FR++ VN G+SEP+ P
Sbjct: 41 DGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQP 100
Query: 80 VKICE 84
V I E
Sbjct: 101 VTIRE 105
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1641 WLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICE 1691
W+ N V C F+V +L G FR++ VN G+SEP+ PV I E
Sbjct: 55 WVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 105
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 905 PENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFVRVR 963
P++L ++ + TL W PP G I Y+VE S W + V V+
Sbjct: 12 PQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVK 71
Query: 964 NLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH 997
+L G+ FRV+ N G S+PA + P+ +
Sbjct: 72 DLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 105
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 396 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 455
L W P G I GY ++ GS+ W N + +L G + FRV
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 456 NEAGLSLPSSASNSVQIKD 474
N AG S P++ V I++
Sbjct: 87 NIAGRSEPATLLQPVTIRE 105
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 2003 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQ 2062
L W P G I GY ++ GS+ W N + +L G + FRV
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 2063 NEAGLSLPSSASNSVQIKD 2081
N AG S P++ V I++
Sbjct: 87 NIAGRSEPATLLQPVTIRE 105
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 673 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAIT-- 730
PQ TVED+ + L WR P G I Y+VE W+ T
Sbjct: 12 PQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVK 71
Query: 731 GLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDT 765
L G + FRV N+ GRS+P+T +T +++
Sbjct: 72 DLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES 106
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 1250 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSF-VRSPAYDVFGLETNRQYRFRVRAE 1308
L W+PP G I Y+VE + W + V + V L T + FRV
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 1309 NQYGVSEPLELDNSITAK 1326
N G SEP L +T +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 296 LHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAV 354
L W PP G + Y+VE W+ + F V+ L G LF V+ V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 355 NENGMGPPLEGINPIKAK 372
N G P + P+ +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 1903 LHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEGQEYLFHVMAV 1961
L W PP G + Y+VE W+ + F V+ L G LF V+ V
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 1962 NENGMGPPLEGINPIKAK 1979
N G P + P+ +
Sbjct: 87 NIAGRSEPATLLQPVTIR 104
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMNQLHHP 877
++I +G G FG V+ RE++ I A K + LEK +R+E++I + L HP
Sbjct: 7 FEIGRPLGKGKFGNVYLAREKQRKFILALKVL-FKAQLEKAGVEHQLRREVEIQSHLRHP 65
Query: 878 KLINLHDAFEDDDEMVLIFE 897
++ L+ F D + LI E
Sbjct: 66 NILRLYGYFHDATRVYLILE 85
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 898 VLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKD--YNSTVWTKVSSYV 955
V D P+PP +L + S+ L WTP DN S IT +++E +D + +W +
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSWTPGDDN-NSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPA 987
T NL+ Y FRVMA N G S P+
Sbjct: 72 GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPS 103
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 1227 VVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESAT---GFWSKLSS 1283
V D P+PP L+++D +S LSW P DD SPIT +++E YE A G W +
Sbjct: 13 VYDVPNPPFD-LELTDQLDKSVQLSWTP-GDDNNSPITKFIIE-YEDAMHKPGLWHHQTE 69
Query: 1284 FVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1318
+ L Y FRV A N G S P E
Sbjct: 70 VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSE 104
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 666 ISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKRE--HPMSSW---IRVG 720
+ D P+PP + D S+ L W P D S IT +I+E + H W V
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVS 71
Query: 721 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTK 763
T+ T A LSP Y FRV A N G+S PS S+ TK
Sbjct: 72 GTQ--TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 375 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID----KHEVGSDAWQRVNVA 430
YD P+PP +T V LSW P DD S I + I+ H+ G Q
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 431 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 481
+Q+N+ + Y FRV A N G SLPS AS K K P
Sbjct: 73 TQTTAQLNLSPYV---NYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 1982 YDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWID----KHEVGSDAWQRVNVA 2037
YD P+PP +T V LSW P DD S I + I+ H+ G Q
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 2038 ICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAP 2088
+Q+N+ + Y FRV A N G SLPS AS K K P
Sbjct: 73 TQTTAQLNLSPYV---NYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 45/123 (36%)
Query: 1559 VDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEG 1618
D + S+ L W+ P D SPI ++I+E D K LW +
Sbjct: 26 TDQLDKSVQLSWT-PGDDNNSPITKFIIEYE----------------DAMHKPGLWHHQT 68
Query: 1619 KSIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKS 1678
+ G++ +TAQ LNL +Y FR++AVN+IGKS
Sbjct: 69 EVSGTQ--TTAQ--------------------------LNLSPYVNYSFRVMAVNSIGKS 100
Query: 1679 EPS 1681
PS
Sbjct: 101 LPS 103
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 999 FDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPD 1058
+DVP P + D + S+ L W+ P D SPI ++I+E D
Sbjct: 14 YDVPNPPFDLELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYE----------------D 56
Query: 1059 TSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGP 1118
K LW + + G++ +TAQ +L Y FRV AVN+ G+
Sbjct: 57 AMHKPGLWHHQTEVSGTQ--TTAQL-------------NLSPYVNYSFRVMAVNSIGKSL 101
Query: 1119 WSSSSDIIMCCA 1130
S +S+ + A
Sbjct: 102 PSEASEQYLTKA 113
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 50 LNLVEGNDYEFRIIAVNAIGKSEPS 74
LNL +Y FR++AVN+IGKS PS
Sbjct: 79 LNLSPYVNYSFRVMAVNSIGKSLPS 103
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 87
Query: 158 NGDYTCEAYNSVG 170
G+YTC N G
Sbjct: 88 KGNYTCVVENEYG 100
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 87
Query: 1765 NGDYTCEAYNSVG 1777
G+YTC N G
Sbjct: 88 KGNYTCVVENEYG 100
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 558 KGG 560
+ G
Sbjct: 98 EYG 100
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 2165 KGG 2167
+ G
Sbjct: 98 EYG 100
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 21 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 537
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 538 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 584
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 2144
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 2145 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 2191
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 24 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 81
Query: 158 NGDYTCEAYNSVG 170
G+YTC N G
Sbjct: 82 KGNYTCVVENEYG 94
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 24 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 81
Query: 1765 NGDYTCEAYNSVG 1777
G+YTC N G
Sbjct: 82 KGNYTCVVENEYG 94
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 32 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
Query: 558 KGG 560
+ G
Sbjct: 92 EYG 94
Score = 37.4 bits (85), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 32 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
Query: 2165 KGG 2167
+ G
Sbjct: 92 EYG 94
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 15 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 74
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVV 1228
+ +D G+YT + N GS + + + VV
Sbjct: 75 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 105
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 23 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 80
Query: 158 NGDYTCEAYNSVG 170
G+YTC N G
Sbjct: 81 KGNYTCVVENEYG 93
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 23 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 80
Query: 1765 NGDYTCEAYNSVG 1777
G+YTC N G
Sbjct: 81 KGNYTCVVENEYG 93
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 31 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
Query: 558 KGG 560
+ G
Sbjct: 91 EYG 93
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 31 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
Query: 2165 KGG 2167
+ G
Sbjct: 91 EYG 93
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 14 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 73
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVV 1228
+ +D G+YT + N GS + + + VV
Sbjct: 74 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 104
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 76
Query: 158 NGDYTCEAYNSVG 170
G+YTC N G
Sbjct: 77 KGNYTCVVENEYG 89
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 76
Query: 1765 NGDYTCEAYNSVG 1777
G+YTC N G
Sbjct: 77 KGNYTCVVENEYG 89
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 27 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
Query: 558 KGG 560
+ G
Sbjct: 87 EYG 89
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 27 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
Query: 2165 KGG 2167
+ G
Sbjct: 87 EYG 89
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 10 TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 69
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVV 1228
+ +D G+YT + N GS + + + VV
Sbjct: 70 ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 796 DQYVFDIYSKYVPQPVDIKTSSVY-DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP 854
D+YV D P V +K + D ++IL+ IG GAF V + ++TG ++A K +
Sbjct: 36 DKYVADFLQWAEPIVVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMN 95
Query: 855 VSHNLEK---ELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
L++ R+E D++ + LH AF+D++ + L+ E
Sbjct: 96 KWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVME 141
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV------FRLHFN 151
K L VP + +C A G P P WL+NGRE R GG+ + L
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----GGIKLRHQQWSLVME 77
Query: 152 EVTDVDNGDYTCEAYNSVG 170
V D G+YTC N G
Sbjct: 78 SVVPSDRGNYTCVVENKFG 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV------FRLHFN 1758
K L VP + +C A G P P WL+NGRE R GG+ + L
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----GGIKLRHQQWSLVME 77
Query: 1759 EVTDVDNGDYTCEAYNSVG 1777
V D G+YTC N G
Sbjct: 78 SVVPSDRGNYTCVVENKFG 96
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 558 K-GGVKSTKAELIIMTAP 574
K G ++ T ++ +P
Sbjct: 94 KFGSIRQTYTLDVLERSP 111
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 34 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 93
Query: 2165 K-GGVKSTKAELIIMTAP 2181
K G ++ T ++ +P
Sbjct: 94 KFGSIRQTYTLDVLERSP 111
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLR----NGREIS-SGARYRV-------ETAGGVFRLHFN 151
LG + C+ P +WL+ NG ++ G Y E+ RL
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 152 EVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 183
V++ D G+Y C A N +G A + + + P
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLR----NGREIS-SGARYRV-------ETAGGVFRLHFN 1758
LG + C+ P +WL+ NG ++ G Y E+ RL
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 1759 EVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 1790
V++ D G+Y C A N +G A + + + P
Sbjct: 188 NVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHIF---------AEGD 534
N A+ + +F C + +P I WLK GS+ + P ++ E D
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKSWISESVEAD 181
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 575
+ N V D EY+CRA N GV + KA + + P+
Sbjct: 182 VRLRLAN-VSERDGGEYLCRATNFIGV-AEKAFWLSVHGPR 220
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHIF---------AEGD 2141
N A+ + +F C + +P I WLK GS+ + P ++ E D
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKSWISESVEAD 181
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 2182
+ N V D EY+CRA N GV + KA + + P+
Sbjct: 182 VRLRLAN-VSERDGGEYLCRATNFIGV-AEKAFWLSVHGPR 220
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETA---GGVF 146
P + P DL V G L+C TGT + WL NG ++ G+ YRV + G
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGS-YRVRISVLHDGT- 369
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 182
L+F VT D G YTC NS G S+ + +GT
Sbjct: 370 -LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGT 404
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETA---GGVF 1753
P + P DL V G L+C TGT + WL NG ++ G+ YRV + G
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCR-TGTSMTSVNWLTPNGTLMTHGS-YRVRISVLHDGT- 369
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 1789
L+F VT D G YTC NS G S+ + +GT
Sbjct: 370 -LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGT 404
>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By
Mutational Studies
Length = 298
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLE-----KELIR 865
T Y++Y+ E +G G VV RC + T +A K I V S + E +E
Sbjct: 12 THGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATL 71
Query: 866 KEIDIMNQLH-HPKLINLHDAFEDDDEMVLIFEVLDR 901
KE+DI+ ++ HP +I L D +E + L+F+++ +
Sbjct: 72 KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKK 108
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+P+++ + D+ V + + + +C+A G P P RWL+NG + + R ++E L+
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 350
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
V D G Y C A N G +S+ + +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+P+++ + D+ V + + + +C+A G P P RWL+NG + + R ++E L+
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 350
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
V D G Y C A N G +S+ + +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 499 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 224 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 279
Query: 558 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 617
G K +L P + + + + E+V + G PKP W ++ + +
Sbjct: 280 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 618 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 657
+ +E L I + D Y+ VAEN G+
Sbjct: 337 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 372
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 88 GEKPDFIVPLKDLVVPLG---KLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 144
G P F+ ++ PL K + L CE G P P RW NG ++ G +R G
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 145 VFRLHFNEVTDVDNGDYTCEAYNSVG 170
++ N D G Y C A NS G
Sbjct: 63 SLLIN-NPNKTQDAGTYQCIATNSFG 87
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 1695 GEKPDFIVPLKDLVVPLG---KLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 1751
G P F+ ++ PL K + L CE G P P RW NG ++ G +R G
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 62
Query: 1752 VFRLHFNEVTDVDNGDYTCEAYNSVG 1777
++ N D G Y C A NS G
Sbjct: 63 SLLIN-NPNKTQDAGTYQCIATNSFG 87
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 39/240 (16%)
Query: 530 FAEGDTYTLIINSVYGVDADEYVC---RAVNKGGVKSTKAELIIMT-------APKFNVP 579
F +T L I V D Y C V V LI+ PK V
Sbjct: 151 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV- 209
Query: 580 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRD 638
+F +T +KG V ++ G P P I W R D + I H + + IL I +
Sbjct: 210 -QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPN 264
Query: 639 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGG 698
D Y VAEN G + + K Q++ P + DI H ++ + W+
Sbjct: 265 FQQEDAGSYECVAENSRGKN--VAKGQLTFYAQPNWVQIINDI-HVAME---ESVFWECK 318
Query: 699 SNITNYIVEKREHPMSSWIRVGNTRFT---------TMAITGLSPGHQYEFRVYAENVYG 749
+N R P W++ G+ T T+ IT ++ ++ AEN +G
Sbjct: 319 AN-------GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 500 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 559
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 560 GVKSTKAELIIMT 572
GV + AEL ++
Sbjct: 371 GVIFSSAELSVIA 383
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 2107 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 2167 GVKSTKAELIIMT 2179
GV + AEL ++
Sbjct: 371 GVIFSSAELSVIA 383
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 105 GKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
G + L+C A G PVP W R +G+ I+ AR + G+ L D G Y C
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYEC 275
Query: 164 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 223
A NS G ++ P ++ N +++ ++ + G KNG
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 224 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+ + DR + + + I + DAG Y
Sbjct: 336 LLTRDRIQI----EQGTLNITIVNLSDAGMY 362
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
G + L+C A G PVP W R +G+ I+ AR + G+ L D G Y C
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYEC 275
Query: 1771 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 1830
A NS G ++ P ++ N +++ ++ + G KNG
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335
Query: 1831 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+ + DR + + + I + DAG Y
Sbjct: 336 LLTRDRIQI----EQGTLNITIVNLSDAGMY 362
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 494 QNHNAQFQCTITGCPKPTISW-LKGSR-EITPSARHHIFAEGDTYTLIINSVYGVDADEY 551
+ + C + G PKP I W L G+ +I R+ + D LI N DA Y
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DGSLLINNPNKTQDAGTY 78
Query: 552 VCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
C A N G + S +A+L F R R T +G+ +V+
Sbjct: 79 QCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVRRGQGMVL 122
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1143 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 1202
I D+ V E +GRPKPT W NGD + RI+ E N S
Sbjct: 302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLS---- 357
Query: 1203 TDSGSYTIQLVNTVGSDSASCKVYVV 1228
D+G Y N G +S ++ V+
Sbjct: 358 -DAGMYQCVAENKHGVIFSSAELSVI 382
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 2106 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 2164
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 224 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 279
Query: 2165 KGGVKSTKAELIIMTAPKF 2183
G K +L P +
Sbjct: 280 SRGKNVAKGQLTFYAQPNW 298
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 149
+P+++ + D+ V + + + +C+A G P P RWL+NG + + R ++E L+
Sbjct: 294 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 349
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
V D G Y C A N G +S+ + +
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLH 1756
+P+++ + D+ V + + + +C+A G P P RWL+NG + + R ++E L+
Sbjct: 294 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLN 349
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
V D G Y C A N G +S+ + +
Sbjct: 350 ITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 499 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 223 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 278
Query: 558 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVI 617
G K +L P + + + + E+V + G PKP W ++ + +
Sbjct: 279 SRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 618 ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGM 657
+ +E L I + D Y+ VAEN G+
Sbjct: 336 LTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGV 371
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 88 GEKPDFIVPLKDLVVPLG---KLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 144
G P F+ ++ PL K + L CE G P P RW NG ++ G +R G
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 61
Query: 145 VFRLHFNEVTDVDNGDYTCEAYNSVG 170
++ N D G Y C A NS G
Sbjct: 62 SLLIN-NPNKTQDAGTYQCIATNSFG 86
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 1695 GEKPDFIVPLKDLVVPLG---KLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 1751
G P F+ ++ PL K + L CE G P P RW NG ++ G +R G
Sbjct: 2 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG 61
Query: 1752 VFRLHFNEVTDVDNGDYTCEAYNSVG 1777
++ N D G Y C A NS G
Sbjct: 62 SLLIN-NPNKTQDAGTYQCIATNSFG 86
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 39/240 (16%)
Query: 530 FAEGDTYTLIINSVYGVDADEYVC---RAVNKGGVKSTKAELIIMT-------APKFNVP 579
F +T L I V D Y C V V LI+ PK V
Sbjct: 150 FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV- 208
Query: 580 PRFRDTAYFDKGENVVVKIPFTGYPKPKITWYR-DNEVIESGGHFHVETSERHAILTIRD 638
+F +T +KG V ++ G P P I W R D + I H + + IL I +
Sbjct: 209 -QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPN 263
Query: 639 ASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGG 698
D Y VAEN G + + K Q++ P + DI H ++ + W+
Sbjct: 264 FQQEDAGSYECVAENSRGKN--VAKGQLTFYAQPNWVQIINDI-HVAME---ESVFWECK 317
Query: 699 SNITNYIVEKREHPMSSWIRVGNTRFT---------TMAITGLSPGHQYEFRVYAENVYG 749
+N R P W++ G+ T T+ IT ++ ++ AEN +G
Sbjct: 318 AN-------GRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 500 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 559
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 314 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 560 GVKSTKAELIIMT 572
GV + AEL ++
Sbjct: 370 GVIFSSAELSVIA 382
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 2107 FQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166
++C G PKPT WLK + R I + TL I V DA Y C A NK
Sbjct: 314 WECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 2167 GVKSTKAELIIMT 2179
GV + AEL ++
Sbjct: 370 GVIFSSAELSVIA 382
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 105 GKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
G + L+C A G PVP W R +G+ I+ AR + G+ L D G Y C
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYEC 274
Query: 164 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 223
A NS G ++ P ++ N +++ ++ + G KNG
Sbjct: 275 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 334
Query: 224 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
+ + DR + + + I + DAG Y
Sbjct: 335 LLTRDRIQI----EQGTLNITIVNLSDAGMY 361
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
G + L+C A G PVP W R +G+ I+ AR + G+ L D G Y C
Sbjct: 219 GTTVKLECFALGNPVPTILWRRADGKPIARKARR--HKSNGI--LEIPNFQQEDAGSYEC 274
Query: 1771 EAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV 1830
A NS G ++ P ++ N +++ ++ + G KNG
Sbjct: 275 VAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 334
Query: 1831 VQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
+ + DR + + + I + DAG Y
Sbjct: 335 LLTRDRIQI----EQGTLNITIVNLSDAGMY 361
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 494 QNHNAQFQCTITGCPKPTISW-LKGSR-EITPSARHHIFAEGDTYTLIINSVYGVDADEY 551
+ + C + G PKP I W L G+ +I R+ + D LI N DA Y
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV---DGSLLINNPNKTQDAGTY 77
Query: 552 VCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
C A N G + S +A+L F R R T +G+ +V+
Sbjct: 78 QCIATNSFGTIVSREAKLQFAYLENFKT--RTRSTVSVRRGQGMVL 121
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 1143 IRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRA 1202
I D+ V E +GRPKPT W NGD + RI+ E N S
Sbjct: 301 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLS---- 356
Query: 1203 TDSGSYTIQLVNTVGSDSASCKVYVV 1228
D+G Y N G +S ++ V+
Sbjct: 357 -DAGMYQCVAENKHGVIFSSAELSVI 381
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 2106 QFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 2164
+ +C G P PTI W + + I AR H L I + DA Y C A N
Sbjct: 223 KLECFALGNPVPTILWRRADGKPIARKARRH----KSNGILEIPNFQQEDAGSYECVAEN 278
Query: 2165 KGGVKSTKAELIIMTAPKF 2183
G K +L P +
Sbjct: 279 SRGKNVAKGQLTFYAQPNW 297
>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase,
Kinase: An Active Protein Kinase Complexed With
Nucleotide, Substrate-Analogue And Product
Length = 298
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLE-----KELIR 865
T Y++Y+ E +G G VV RC + T +A K I V S + E +E
Sbjct: 12 THGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATL 71
Query: 866 KEIDIMNQLH-HPKLINLHDAFEDDDEMVLIFEVLDR 901
KE+DI+ ++ HP +I L D +E + L+F+++ +
Sbjct: 72 KEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKK 108
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV------FRLHFN 151
K L VP + +C A G P P WL+NGRE R GG+ + L
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----GGIKLRHQQWSLVME 185
Query: 152 EVTDVDNGDYTCEAYNSVG 170
V D G+YTC N G
Sbjct: 186 SVVPSDRGNYTCVVENKFG 204
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV------FRLHFN 1758
K L VP + +C A G P P WL+NGRE R GG+ + L
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRI-----GGIKLRHQQWSLVME 185
Query: 1759 EVTDVDNGDYTCEAYNSVG 1777
V D G+YTC N G
Sbjct: 186 SVVPSDRGNYTCVVENKFG 204
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 24/179 (13%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 558 K-GGVKSTKAELIIMTAP-----KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWY 611
K G ++ T ++ +P + +P TA G +V +P I W
Sbjct: 202 KFGSIRQTYTLDVLERSPHRPILQAGLPA--NQTAVL--GSDVEFHCKVYSDAQPHIQWL 257
Query: 612 RDNEV----IESGGHFHV---------ETSERHAILTIRDASNVDTAPYRVVAENDLGM 657
+ EV + G +V T + +L++ + + D Y +A N +G
Sbjct: 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P P+ISWLK RE R I ++L++ SV D Y C N
Sbjct: 142 RFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVEN 201
Query: 2165 K-GGVKSTKAELIIMTAP 2181
K G ++ T ++ +P
Sbjct: 202 KFGSIRQTYTLDVLERSP 219
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLR----NGREIS-SGARYR--VETAGG--------VFRL 148
LG + C+ P +WL+ NG ++ G Y ++TAG V L
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSS 176
H VT D G+YTC A NS+GF+H S+
Sbjct: 296 H--NVTFEDAGEYTCLAGNSIGFSHHSA 321
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLR----NGREIS-SGARYR--VETAGG--------VFRL 1755
LG + C+ P +WL+ NG ++ G Y ++TAG V L
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSS 1783
H VT D G+YTC A NS+GF+H S+
Sbjct: 296 H--NVTFEDAGEYTCLAGNSIGFSHHSA 321
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHIFA---------EGD 534
N A+ + +F C + +P I WLK GS+ + P ++ + +
Sbjct: 231 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKTAGANTTDKE 289
Query: 535 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
L +++V DA EY C A N G A L+++ A
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSREITPSARHHIFA---------EGD 2141
N A+ + +F C + +P I WLK GS+ + P ++ + +
Sbjct: 231 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSK-VGPDGTPYVTVLKTAGANTTDKE 289
Query: 2142 TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
L +++V DA EY C A N G A L+++ A
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 807 VPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK 866
V P+D+ D Y+++++IG+G FGV R++++ + A K+I ++ E +++
Sbjct: 6 VSGPMDLPIMHDSDRYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKID-ENVKR 64
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
EI L HP ++ + + ++ E
Sbjct: 65 EIINHRSLRHPNIVRFKEVILTPTHLAIVME 95
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 807 VPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK 866
V P+D+ D Y+++++IG+G FGV R++++ + A K+I ++ E +++
Sbjct: 6 VSGPMDLPIMHDSDRYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKID-ENVKR 64
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
EI L HP ++ + + ++ E
Sbjct: 65 EIINHRSLRHPNIVRFKEVILTPTHLAIVME 95
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 30 AVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 87
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGD 210
G+YTC N G + + + + ++R P+ + G GD
Sbjct: 88 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGD 135
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P+P RWL+NG+E R Y+V + L V D
Sbjct: 30 AVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSD 87
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGD 1817
G+YTC N G + + + + ++R P+ + G GD
Sbjct: 88 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGD 135
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 558 KGG 560
+ G
Sbjct: 98 EYG 100
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT+ WLK +E R + ++LI+ SV D Y C N
Sbjct: 38 KFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 97
Query: 2165 KGG 2167
+ G
Sbjct: 98 EYG 100
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T + R V A P G P PT W NG E + RI NQ
Sbjct: 21 TEKMEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIM 80
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 113
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 537
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 538 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 584
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 2144
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186
Query: 2145 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 2191
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 231
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR-KEIDIMNQLHHPKLI 880
Y L+++G G + V++ + + T N+ A K I + H +E+ ++ L H ++
Sbjct: 4 YIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIV 63
Query: 881 NLHDAFEDDDEMVLIFEVLDR 901
LHD + + L+FE LD+
Sbjct: 64 TLHDIIHTEKSLTLVFEYLDK 84
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 895 IFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY 954
I + D P P + E + + + + P +GG I +Y V+ K+ S +W V S+
Sbjct: 11 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 70
Query: 955 VTTPFVRVRNLAIGSTYEFRVMAENQYG 982
V + NL +TYE RV A N G
Sbjct: 71 GVQTMVVLNNLEPNTTYEIRVAAVNGKG 98
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 1217 GSDSASCKVYVV---DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYES 1273
GS +S + Y++ D PS P G + + +++ + +S+ P GG PI +Y V+ E
Sbjct: 1 GSSGSSGQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 59
Query: 1274 ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYG 1312
A+ W + S + LE N Y RV A N G
Sbjct: 60 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKG 98
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 288 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 347
E+++ T + +N P GG+ + HY V+ ++++ W + + T ++ L Y
Sbjct: 28 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTY 87
Query: 348 LFHVMAVNENGMG 360
V AVN G G
Sbjct: 88 EIRVAAVNGKGQG 100
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 1895 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEY 1954
E+++ T + +N P GG+ + HY V+ ++++ W + + T ++ L Y
Sbjct: 28 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTY 87
Query: 1955 LFHVMAVNENGMG 1967
V AVN G G
Sbjct: 88 EIRVAAVNGKGQG 100
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 33/121 (27%)
Query: 1000 DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDT 1059
DVP +P K ++ ++ + + ++KP GG PI Y V+ + ++ + W
Sbjct: 16 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW----------- 64
Query: 1060 SLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPW 1119
K V R Q + +L PN YE RV AVN GQG +
Sbjct: 65 --KIV------------RSHGVQTMVVLNNLEPNTT--------YEIRVAAVNGKGQGDY 102
Query: 1120 S 1120
S
Sbjct: 103 S 103
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 376 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 435
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 16 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 74
Query: 436 QINIPNLIEGRQYEFRVYAQNEAG 459
+ + NL YE RV A N G
Sbjct: 75 MVVLNNLEPNTTYEIRVAAVNGKG 98
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1983 DKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPS 2042
D PS P + ++ +S++KP GG I Y +D EV S+ W+ V + +
Sbjct: 16 DVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVR-SHGVQT 74
Query: 2043 QINIPNLIEGRQYEFRVYAQNEAG 2066
+ + NL YE RV A N G
Sbjct: 75 MVVLNNLEPNTTYEIRVAAVNGKG 98
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 664 IQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTR 723
+ ++D P P + ++ + + + P GG I +Y V+ +E W V +
Sbjct: 12 LALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHG 71
Query: 724 FTTMAI-TGLSPGHQYEFRVYAENVYGRSDPS 754
TM + L P YE RV A N G+ D S
Sbjct: 72 VQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 103
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P ++N
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81
Query: 882 LHDAFEDDDEMVLIFEVL 899
D++ DE+ ++ E L
Sbjct: 82 YLDSYLVGDELWVVMEYL 99
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P ++N
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81
Query: 882 LHDAFEDDDEMVLIFEVL 899
D++ DE+ ++ E L
Sbjct: 82 YLDSYLVGDELWVVMEYL 99
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P ++N
Sbjct: 22 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81
Query: 882 LHDAFEDDDEMVLIFEVL 899
D++ DE+ ++ E L
Sbjct: 82 YLDSYLVGDELWVVMEYL 99
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 810 PVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID 869
P+D+ D YD +++IG+G FGV R++ T + A K+I ++ E +++EI
Sbjct: 10 PLDMPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAID-ENVQREII 68
Query: 870 IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
L HP ++ + + +I E
Sbjct: 69 NHRSLRHPNIVRFKEVILTPTHLAIIME 96
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P ++N
Sbjct: 23 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 82
Query: 882 LHDAFEDDDEMVLIFEVL 899
D++ DE+ ++ E L
Sbjct: 83 YLDSYLVGDELWVVMEYL 100
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
Y E+IG GA G V+ + TG A + + + +KELI EI +M + +P ++N
Sbjct: 23 YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 82
Query: 882 LHDAFEDDDEMVLIFEVL 899
D++ DE+ ++ E L
Sbjct: 83 YLDSYLVGDELWVVMEYL 100
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 31/178 (17%)
Query: 101 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 157
VP + +C A G P P RWL+NG+E R Y+V + L V D
Sbjct: 29 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH--WSLIXESVVPSD 86
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 206
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 87 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 141
Query: 207 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL-------DDYIIIFIKEIRKEDAGDY 254
Y+ QP + KNG D VL + ++ + + + DAG+Y
Sbjct: 142 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 199
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 68/178 (38%), Gaps = 31/178 (17%)
Query: 1708 VVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR---YRVETAGGVFRLHFNEVTDVD 1764
VP + +C A G P P RWL+NG+E R Y+V + L V D
Sbjct: 29 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQH--WSLIXESVVPSD 86
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMP-----------NALYIPEGDNTKVKIF 1813
G+YTC N G + + + + ++R P NA + GD V
Sbjct: 87 KGNYTCVVENEYGSINHTYHLDV-----VERSPHRPILQAGLPANASTVVGGDVEFVCKV 141
Query: 1814 YAGDQPMEV---SLTKNGRVVQSDDRFKFTVL-------DDYIIIFIKEIRKEDAGDY 1861
Y+ QP + KNG D VL + ++ + + + DAG+Y
Sbjct: 142 YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 199
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%)
Query: 1138 TSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNK 1197
T R V A P G P PT W NG E + RI NQ
Sbjct: 20 TEKXEKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX 79
Query: 1198 SAKRATDSGSYTIQLVNTVGSDSASCKVYVVDK 1230
+ +D G+YT + N GS + + + VV++
Sbjct: 80 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVER 112
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 499 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 557
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 37 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 558 KGG 560
+ G
Sbjct: 97 EYG 99
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 2106 QFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVYGVDADEYVCRAVN 2164
+F+C G P PT WLK +E R + ++LI SV D Y C N
Sbjct: 37 KFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVEN 96
Query: 2165 KGG 2167
+ G
Sbjct: 97 EYG 99
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 537
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 126 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 185
Query: 538 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 584
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 186 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 230
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLK-----GSR------EITPSARHHIFAEGDTYT 2144
NA+ + + +F C + +P I W+K GS+ +H +
Sbjct: 126 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 185
Query: 2145 LIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRD 2191
L + +V DA EY+C+ N G + A L ++ PK P R ++
Sbjct: 186 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVL--PKQQAPGREKE 230
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 811 VDIKTSSVY----DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELI 864
VD+ T ++Y + Y L++IG G+FG + + G + K I +S + E+E
Sbjct: 11 VDLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREES 70
Query: 865 RKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
R+E+ ++ + HP ++ ++FE++ + ++ +
Sbjct: 71 RREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPK 878
D Y++ E+IG G++ V RC + T FA K I S E EI+I+ + HP
Sbjct: 22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE----EIEILLRYGQHPN 77
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
+I L D ++D + ++ E++
Sbjct: 78 IITLKDVYDDGKYVYVVTELM 98
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPK 878
YD+++ IG GAFG V R + + ++A K + +++ +E DIM + P
Sbjct: 77 YDVVKVIGRGAFGEVQLVRHKASQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 136
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
++ L AF+DD + ++ E +
Sbjct: 137 VVQLFCAFQDDKYLYMVMEYM 157
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDT 535
+ +AP+I +++ Q +A F+ + G P P W K +I S R + + E +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 572
L+I V G D+ + +A+N G S+ A L++
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDT 2142
+ +AP+I +++ Q +A F+ + G P P W K +I S R + + E +
Sbjct: 2 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 61
Query: 2143 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 2179
L+I V G D+ + +A+N G S+ A L++
Sbjct: 62 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR-YRVETAGGVFR 147
E P ++ V G + G P P+C W +NG +I R Y V
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 148 LHFNEVTDVDNGDYTCEAYNSVG 170
L +VT D+ +A N G
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG 86
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR-YRVETAGGVFR 1754
E P ++ V G + G P P+C W +NG +I R Y V
Sbjct: 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 1755 LHFNEVTDVDNGDYTCEAYNSVG 1777
L +VT D+ +A N G
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAG 86
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 807 VPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK 866
V P+D+ D Y+++++IG G FGV R+++ + A K+I ++ E +++
Sbjct: 6 VAGPMDLPIMHDSDRYELVKDIGAGNFGVARLMRDKQANELVAVKYIERGEKID-ENVKR 64
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
EI L HP ++ + + ++ E
Sbjct: 65 EIINHRSLRHPNIVRFKEVILTPTHLAIVME 95
>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide
Substrate Complex: Kinase Substrate Recognition
Length = 277
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLE-----KELIRKEID 869
Y++Y+ E +G G VV RC + T +A K I V S + E +E KE+D
Sbjct: 3 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 62
Query: 870 IMNQLH-HPKLINLHDAFEDDDEMVLIFEVLDR 901
I+ ++ HP +I L D +E + L+F+++ +
Sbjct: 63 ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKK 95
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPK 878
D Y++ E+IG G++ V RC + T FA K I S E EI+I+ + HP
Sbjct: 22 DGYEVKEDIGVGSYSVCKRCIHKATNXEFAVKIIDKSKRDPTE----EIEILLRYGQHPN 77
Query: 879 LINLHDAFEDDDEMVLIFEV 898
+I L D ++D + ++ E+
Sbjct: 78 IITLKDVYDDGKYVYVVTEL 97
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA-RYRVET-AGGVFRL 148
P F + LK + G +T C G P PK W ++G++IS + Y ++ G L
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 67
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
H T D+G+YT A N G + R+ +
Sbjct: 68 HTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA-RYRVET-AGGVFRL 1755
P F + LK + G +T C G P PK W ++G++IS + Y ++ G L
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 67
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
H T D+G+YT A N G + R+ +
Sbjct: 68 HTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 478 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 537
A AP + L++ + F C + G PKP I W K ++I+P + H+ T
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 538 LIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 570
+++ D Y A N G S L++
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 2085 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYT 2144
A AP + L++ + F C + G PKP I W K ++I+P + H+ T
Sbjct: 5 ATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 64
Query: 2145 LIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 2177
+++ D Y A N G S L++
Sbjct: 65 CSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1140 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKS 1198
++ ++ + G T T +G PKP W +G ++SP + + T + +
Sbjct: 11 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 70
Query: 1199 AKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
A D G+YTI N G S + ++ V
Sbjct: 71 ASTLDDDGNYTIMAANPQGRVSCTGRLMV 99
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPK 878
Y++++ IG GAFG V R + T ++A K + +++ +E DIM + P
Sbjct: 76 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 135
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
++ L AF+DD + ++ E +
Sbjct: 136 VVQLFYAFQDDRYLYMVMEYM 156
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 821 HYDILEEIGTGAFGVVHRCRERK---TGNIFAAKFIPVSHNLEKELIRKEI--DIMNQLH 875
H+++L+ +G G+FG V R+ +G+++A K + + ++ +R ++ DI+ ++
Sbjct: 29 HFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVN 88
Query: 876 HPKLINLHDAFEDDDEMVLIFEVL 899
HP ++ LH AF+ + ++ LI + L
Sbjct: 89 HPFVVKLHYAFQTEGKLYLILDFL 112
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPK 878
Y++++ IG GAFG V R + T ++A K + +++ +E DIM + P
Sbjct: 71 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 130
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
++ L AF+DD + ++ E +
Sbjct: 131 VVQLFYAFQDDRYLYMVMEYM 151
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA-RYRVET-AGGVFRL 148
P F + LK + G +T C G P PK W ++G++IS + Y ++ G L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
H T D+G+YT A N G + R+ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA-RYRVET-AGGVFRL 1755
P F + LK + G +T C G P PK W ++G++IS + Y ++ G L
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 1756 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
H T D+G+YT A N G + R+ +
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 536
++ AP + L++ + F C + G PKP I W K ++I+P + H+
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 537 TLIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 570
T +++ D Y A N G S L++
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 2084 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 2143
++ AP + L++ + F C + G PKP I W K ++I+P + H+
Sbjct: 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG 64
Query: 2144 TLIINSVYGV--DADEYVCRAVNKGGVKSTKAELII 2177
T +++ D Y A N G S L++
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1140 DLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDG-RIKFETSENQTIYRNKS 1198
++ ++ + G T T +G PKP W +G ++SP + + T + +
Sbjct: 12 EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 1199 AKRATDSGSYTIQLVNTVGSDSASCKVYV 1227
A D G+YTI N G S + ++ V
Sbjct: 72 ASTLDDDGNYTIMAANPQGRISCTGRLMV 100
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPK 878
Y++++ IG GAFG V R + T ++A K + +++ +E DIM + P
Sbjct: 76 YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 135
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
++ L AF+DD + ++ E +
Sbjct: 136 VVQLFYAFQDDRYLYMVMEYM 156
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
+Y I++ +G G+FG V TG A K I + ++ I +EI + L HP
Sbjct: 14 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 73
Query: 878 KLINLHDAFEDDDEMVLIFE 897
+I L+D + DE++++ E
Sbjct: 74 HIIKLYDVIKSKDEIIMVIE 93
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
+Y I++ +G G+FG V TG A K I + ++ I +EI + L HP
Sbjct: 5 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 64
Query: 878 KLINLHDAFEDDDEMVLIFE 897
+I L+D + DE++++ E
Sbjct: 65 HIIKLYDVIKSKDEIIMVIE 84
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
+Y I++ +G G+FG V TG A K I + ++ I +EI + L HP
Sbjct: 15 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 74
Query: 878 KLINLHDAFEDDDEMVLIFE 897
+I L+D + DE++++ E
Sbjct: 75 HIIKLYDVIKSKDEIIMVIE 94
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 827 EIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF 886
+IG G+ G+V E+ TG A K + + +EL+ E+ IM HH +++++ ++
Sbjct: 52 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSY 111
Query: 887 EDDDEMVLIFEVLD 900
DE+ ++ E L+
Sbjct: 112 LVGDELWVVMEFLE 125
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
+Y I++ +G G+FG V TG A K I + ++ I +EI + L HP
Sbjct: 9 NYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHP 68
Query: 878 KLINLHDAFEDDDEMVLIFE 897
+I L+D + DE++++ E
Sbjct: 69 HIIKLYDVIKSKDEIIMVIE 88
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 70/184 (38%), Gaps = 17/184 (9%)
Query: 498 AQFQCTITGCPKPTISWLKGSREIT-----PSARHHIFAEGDTYTLIINSVYGVDADE-- 550
A C G P PTI W KG + P + + G + L I DE
Sbjct: 27 ATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV 86
Query: 551 YVCRAVNK-GGVKSTKAEL-IIMTAPKFNVPPRFRDTAYFDKGENVVVKI-PFTGYPKPK 607
YVC A N G S A L + + F P GE V++ P G+P+P
Sbjct: 87 YVCVARNYLGEAVSHDASLEVAILRDDFRQNP---SDVMVAVGEPAVMECQPPRGHPEPT 143
Query: 608 ITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG-MDSAIVKIQI 666
I+W +D ++ + R L I D Y V N +G +S + ++ +
Sbjct: 144 ISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200
Query: 667 SDRP 670
+RP
Sbjct: 201 LERP 204
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVF--RLHFN 151
DL+V G+ TL C+A G P P W + G + + + + +G +F R+
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 152 EVTDVDNGDYTCEAYNSVGFA 172
+ D G Y C A N +G A
Sbjct: 78 RKSRPDEGVYVCVARNYLGEA 98
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVF--RLHFN 1758
DL+V G+ TL C+A G P P W + G + + + + +G +F R+
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 1759 EVTDVDNGDYTCEAYNSVGFA 1779
+ D G Y C A N +G A
Sbjct: 78 RKSRPDEGVYVCVARNYLGEA 98
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 1431 DITVKAGEDFSIHV-PFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRS 1489
D+ V GE + P P+P W + S +DD D R+ T+ L++ +++S
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERI----TIRGGKLMITYTRKS 175
Query: 1490 DGGQY 1494
D G+Y
Sbjct: 176 DAGKY 180
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 2113 GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 2172
G P+PTISW K + G L+I DA +YVC N G + ++
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESE 194
Query: 2173 -AELIIMTAPKF 2183
AEL ++ P F
Sbjct: 195 VAELTVLERPSF 206
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 807 VPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK 866
V P+D+ D Y+++++IG+G FGV R++++ + A K+I + +++
Sbjct: 6 VSGPMDLPIMHDSDRYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKIAAN-VKR 64
Query: 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
EI L HP ++ + + ++ E
Sbjct: 65 EIINHRSLRHPNIVRFKEVILTPTHLAIVME 95
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTD 155
P K +VV G+ +T+ C+ TG P P W N + + SG R V +G V + V +
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSGLVIK----GVKN 369
Query: 156 VDNGDYTCEAYNSVGFAHTSSRVKI 180
D G Y C A N G + + V++
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 1703 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTD 1762
P K +VV G+ +T+ C+ TG P P W N + + SG R V +G V + V +
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSGLVIK----GVKN 369
Query: 1763 VDNGDYTCEAYNSVGFAHTSSRVKI 1787
D G Y C A N G + + V++
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGVFRLHFNEV 153
KD++ G + + C P+ + +NG++++ R+ T+G RL F
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--RLLFKTT 277
Query: 154 TDVDNGDYTCEAYNSVGFAHTSS-RVKIGTPPRIDRMP-NALYIPEGDNTKVKIFYAGDQ 211
D G YTCE N VG S ++ + + P+ ++ P + + +G + + G
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP 337
Query: 212 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
V + N + + + TV D ++ IK ++ D G Y
Sbjct: 338 APNVVWSHNAKPLSGG---RATVTDSGLV--IKGVKNGDKGYY 375
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV----ETAGGVFRLHFNEV 1760
KD++ G + + C P+ + +NG++++ R+ T+G RL F
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--RLLFKTT 277
Query: 1761 TDVDNGDYTCEAYNSVGFAHTSS-RVKIGTPPRIDRMP-NALYIPEGDNTKVKIFYAGDQ 1818
D G YTCE N VG S ++ + + P+ ++ P + + +G + + G
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP 337
Query: 1819 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
V + N + + + TV D ++ IK ++ D G Y
Sbjct: 338 APNVVWSHNAKPLSGG---RATVTDSGLV--IKGVKNGDKGYY 375
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 538 LIINSVYGVDADEYVCRAVNK-GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
L+ + D Y C N G + +L +++APK+ P +G++V +
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE--KVIVVKQGQDVTI 329
Query: 597 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
TG P P + W + + + SGG V S L I+ N D Y A N+ G
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPL-SGGRATVTDSG----LVIKGVKNGDKGYYGCRATNEHG 384
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 472 IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA 531
+ P + PE ++ ++ Q + C +TG P P + W ++ ++ R +
Sbjct: 306 VSAPKYEQKPEKVIVVK-----QGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTD 359
Query: 532 EGDTYTLIINSVYGVDADEYVCRAVNKGGVK 562
G L+I V D Y CRA N+ G K
Sbjct: 360 SG----LVIKGVKNGDKGYYGCRATNEHGDK 386
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 2079 IKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA 2138
+ P + PE ++ ++ Q + C +TG P P + W ++ ++ R +
Sbjct: 306 VSAPKYEQKPEKVIVVK-----QGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVTD 359
Query: 2139 EGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169
G L+I V D Y CRA N+ G K
Sbjct: 360 SG----LVIKGVKNGDKGYYGCRATNEHGDK 386
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 1432 ITVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVKNSQRSDG 1491
I VK G+D +I P P W N + + T+ + LV+K + D
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG------RATVTDSGLVIKGVKNGDK 372
Query: 1492 GQYRLQLKNPAG 1503
G Y + N G
Sbjct: 373 GYYGCRATNEHG 384
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 1144 RDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEV--SPDGRIKFETSENQTIYRNKSAKR 1201
+DM AG+ I + P P + NG +V +P+ RI T N+T S KR
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI---TRHNRT-----SGKR 271
Query: 1202 A-------TDSGSYTIQLVNTVGS-DSASCKVYVVDKPSPPQGPLDV 1240
D G YT ++ N VG S K+ VV P Q P V
Sbjct: 272 LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV 318
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 879
D ++I+ E+G FG V++ + ++T + AAK I E E EIDI+ HP +
Sbjct: 12 DFWEIIGELGD--FGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI 69
Query: 880 INLHDAFEDDDEMVLIFE 897
+ L DAF ++ + ++ E
Sbjct: 70 VKLLDAFYYENNLWILIE 87
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPKL 879
+ LE++G G + V++ + TG A K + + S +EI +M +L H +
Sbjct: 6 QFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENI 65
Query: 880 INLHDAFEDDDEMVLIFEVLD 900
+ L+D ++++ L+FE +D
Sbjct: 66 VRLYDVIHTENKLTLVFEFMD 86
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 670 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVE-KREHPMSSWIRVGNT---RFT 725
P+ P PT+ S+ + W P +GG I ++ VE K+ + WI +
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 726 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTS 757
++ ITGL G Y+FRV A N+ G S+PS S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPS 108
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 1232 SPPQGP--LDVSDITPESCSLSWKPPLDDGGSPITNYVVE-KYESATGFWSKLSSFVRSP 1288
SPP+ P +S + S ++W P +GG PI ++ VE K G W +S +
Sbjct: 16 SPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS 74
Query: 1289 --AYDVFGLETNRQYRFRVRAENQYGVSEP 1316
+ ++ GLE Y+FRVRA N G SEP
Sbjct: 75 RLSVEITGLEKGISYKFRVRALNMLGESEP 104
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 46/127 (36%)
Query: 1561 STEDSISLVWSKPRHDGGSPIQRYIVE-KRLISDDKWIKASMAHIPDTSLKYVLWVSEGK 1619
++E S+ + W PR +GG PIQ + VE K+L WI A+ A IP + L
Sbjct: 29 ASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSA-IPPSRL---------- 76
Query: 1620 SIGSERGSTAQFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSE 1679
S + L +G Y+FR+ A+N +G+SE
Sbjct: 77 ---------------------------------SVEITGLEKGISYKFRVRALNMLGESE 103
Query: 1680 PSICTTP 1686
PS + P
Sbjct: 104 PSAPSRP 110
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 33/116 (28%)
Query: 1002 PGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE-KRLISDDKWIKASMAHIPDTS 1060
P AP P ++E S+ + W PR +GG PIQ + VE K+L WI A+ A IP +
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSA-IPPSR 75
Query: 1061 LKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQ 1116
L +T L + Y+FRV A+N G+
Sbjct: 76 LSV------------------------------EITGLEKGISYKFRVRALNMLGE 101
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 899 LDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV-WTKVSSYV-- 955
L P P+ + S+ + W P R NGG I ++ VE K W +S +
Sbjct: 15 LSPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPP 73
Query: 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDP 992
+ V + L G +Y+FRV A N G S+P+ P
Sbjct: 74 SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRP 110
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 CSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTP 79
S + L +G Y+FR+ A+N +G+SEPS + P
Sbjct: 76 LSVEITGLEKGISYKFRVRALNMLGESEPSAPSRP 110
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 378 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 437
P P P ++ V ++W P +GG IQ + ++ ++ + + PS++
Sbjct: 18 PEAPDRPTISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 438 N--IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 468
+ I L +G Y+FRV A N G S PS+ S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSR 109
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 1985 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 2044
P P P ++ V ++W P +GG IQ + ++ ++ + + PS++
Sbjct: 18 PEAPDRPTISTASETSVYVTWI-PRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 2045 N--IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 2075
+ I L +G Y+FRV A N G S PS+ S
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSR 109
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPKLI 880
++++E +G G +G V++ R KTG + A K + V+ + E+E I++EI+++ + HH +
Sbjct: 26 FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIA 84
Query: 881 NLHDAFED------DDEMVLIFE 897
+ AF DD++ L+ E
Sbjct: 85 TYYGAFIKKNPPGMDDQLWLVME 107
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---PVSHNLEKELIRKEIDI 870
K + + Y ++++G+GA+G V CR++ T A K I VS + +L+ +E+ +
Sbjct: 31 KKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLL-EEVAV 89
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ L HP ++ L+D FED L+ E
Sbjct: 90 LKLLDHPNIMKLYDFFEDKRNYYLVME 116
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-LIRKEIDIMN 872
+ + D YD + +GTGAF V +++T + A K I KE + EI +++
Sbjct: 12 QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLH 71
Query: 873 QLHHPKLINLHDAFEDDDEMVLIFEVL 899
++ HP ++ L D +E + LI +++
Sbjct: 72 KIKHPNIVALDDIYESGGHLYLIMQLV 98
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK------ELIRKEIDIMNQ 873
D Y++ E IG+GA VV A K I NLEK EL+ KEI M+Q
Sbjct: 10 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRI----NLEKCQTSMDELL-KEIQAMSQ 64
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVL 899
HHP +++ + +F DE+ L+ ++L
Sbjct: 65 CHHPNIVSYYTSFVVKDELWLVMKLL 90
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN FA K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVME 121
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN FA K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVME 121
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + R +G I A K I + + ++IR E+ ++++ + P
Sbjct: 16 DDFERISELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 74
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 75 YIVGFYGAFYSDGEISICMEHMD 97
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK------ELIRKEIDIMNQ 873
D Y++ E IG+GA VV A K I NLEK EL+ KEI M+Q
Sbjct: 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRI----NLEKCQTSMDELL-KEIQAMSQ 69
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVL 899
HHP +++ + +F DE+ L+ ++L
Sbjct: 70 CHHPNIVSYYTSFVVKDELWLVMKLL 95
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN FA K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHFAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEYSFKDNSNLYMVME 121
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 29 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 88
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 89 FFEDNDFVFVVLELCRR 105
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 49 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 109 FFEDNDFVFVVLELCRR 125
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-LIRKEIDIMN 872
+ + D YD + +GTGAF V +++T + A K I KE + EI +++
Sbjct: 12 QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLH 71
Query: 873 QLHHPKLINLHDAFEDDDEMVLIFEVL 899
++ HP ++ L D +E + LI +++
Sbjct: 72 KIKHPNIVALDDIYESGGHLYLIMQLV 98
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
TL I+ V D Y C A + K + + P GE V +
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 220
Query: 597 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
+ GYP P+I WY++ +ES T + +LTI + S DT Y V+ N +
Sbjct: 221 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 275
Query: 657 MD--SAIVKIQISDRPDPPQFPTVEDIGHDSL 686
+ S +V + + PPQ IG SL
Sbjct: 276 KEKQSHVVSLVVY---VPPQ------IGEKSL 298
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRI---DRMPNALYIPEGDNTKVK 204
L + VT D G YTC A + + S+ V++ P + M + + G+ ++
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 205 IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
Y G P E+ KNG ++S+ K ++ I E+ + D G+Y
Sbjct: 222 AKYLGYPPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNY 266
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRI---DRMPNALYIPEGDNTKVK 1811
L + VT D G YTC A + + S+ V++ P + M + + G+ ++
Sbjct: 162 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 221
Query: 1812 IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
Y G P E+ KNG ++S+ K ++ I E+ + D G+Y
Sbjct: 222 AKYLGYPPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNY 266
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-LIRKEIDIMN 872
+ + D YD + +GTGAF V +++T + A K I KE + EI +++
Sbjct: 12 QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLH 71
Query: 873 QLHHPKLINLHDAFEDDDEMVLIFEVL 899
++ HP ++ L D +E + LI +++
Sbjct: 72 KIKHPNIVALDDIYESGGHLYLIMQLV 98
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 25 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 84
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 85 FFEDNDFVFVVLELCRR 101
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-LIRKEIDIMN 872
+ + D YD + +GTGAF V +++T + A K I KE + EI +++
Sbjct: 12 QAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLH 71
Query: 873 QLHHPKLINLHDAFEDDDEMVLIFEVL 899
++ HP ++ L D +E + LI +++
Sbjct: 72 KIKHPNIVALDDIYESGGHLYLIMQLV 98
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 25 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 84
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 85 FFEDNDFVFVVLELCRR 101
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
L N + A F C T P T++W KG E+ S +H EG T L I+++
Sbjct: 15 LTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73
Query: 547 DADEYVCRAVNKGGVKSTKAELII 570
D+D Y C G ++A+L++
Sbjct: 74 DSDTYTCDI----GQAQSRAQLLV 93
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
L N + A F C T P T++W KG E+ S +H EG T L I+++
Sbjct: 15 LTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKA 73
Query: 2154 DADEYVCRAVNKGGVKSTKAELII 2177
D+D Y C G ++A+L++
Sbjct: 74 DSDTYTCDI----GQAQSRAQLLV 93
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 47 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 106
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 107 FFEDNDFVFVVLELCRR 123
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKL 879
D Y+++++IG+G FGV R++++ + A K+I ++ E +++EI L HP +
Sbjct: 18 DRYELVKDIGSGNFGVARLMRDKQSNELVAVKYIERGEKID-ENVKREIINHRSLRHPNI 76
Query: 880 INLHDAFEDDDEMVLIFE 897
+ + + ++ E
Sbjct: 77 VRFKEVILTPTHLAIVME 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 16/152 (10%)
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVV 596
TL I+ V D Y C A + K + + P GE V +
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRI 350
Query: 597 KIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLG 656
+ GYP P+I WY++ +ES T + +LTI + S DT Y V+ N +
Sbjct: 351 PAKYLGYPPPEIKWYKNGIPLESN-----HTIKAGHVLTIMEVSERDTGNYTVILTNPIS 405
Query: 657 MD--SAIVKIQISDRPDPPQFPTVEDIGHDSL 686
+ S +V + + PPQ IG SL
Sbjct: 406 KEKQSHVVSLVVY---VPPQ------IGEKSL 428
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR--- 147
P L++ +G+ + + C A+G P P+ W ++ + VE +G V +
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-------VEDSGIVLKDGN 719
Query: 148 --LHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176
L V D G YTC+A + +G A +
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR--- 1754
P L++ +G+ + + C A+G P P+ W ++ + VE +G V +
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-------VEDSGIVLKDGN 719
Query: 1755 --LHFNEVTDVDNGDYTCEAYNSVGFAHTSS 1783
L V D G YTC+A + +G A +
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 750
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRI---DRMPNALYIPEGDNTKVK 204
L + VT D G YTC A + + S+ V++ P + M + + G+ ++
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 205 IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
Y G P E+ KNG ++S+ K ++ I E+ + D G+Y
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNY 396
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRI---DRMPNALYIPEGDNTKVK 1811
L + VT D G YTC A + + S+ V++ P + M + + G+ ++
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 1812 IFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
Y G P E+ KNG ++S+ K ++ I E+ + D G+Y
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAG-----HVLTIMEVSERDTGNY 396
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 591 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 650
GE++ V +G P P+I W++DNE + ++ R+ LTIR D Y
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQ 738
Query: 651 AENDLG 656
A + LG
Sbjct: 739 ACSVLG 744
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 539
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 723
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
I V D Y C+A + G +A II A
Sbjct: 724 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 2146
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 723
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
I V D Y C+A + G +A II A
Sbjct: 724 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQT 1192
AP IT +L + T GE ++ SG P P +W + + + D G + + + N T
Sbjct: 666 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 723
Query: 1193 IYRNKSAKRATDSGSYTIQLVNTVG 1217
I R R D G YT Q + +G
Sbjct: 724 IRR----VRKEDEGLYTCQACSVLG 744
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G TL CE + W ++G+++SS ++ RVE G RL + + G+Y+CE
Sbjct: 26 GASATLSCEVAQAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
Query: 165 A 165
A
Sbjct: 85 A 85
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G TL CE + W ++G+++SS ++ RVE G RL + + G+Y+CE
Sbjct: 26 GASATLSCEVAQAQT-EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE 84
Query: 1772 A 1772
A
Sbjct: 85 A 85
Score = 31.2 bits (69), Expect = 7.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 488 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 547
R A +A C + + ++W K ++++ S++ + A G T L++ +
Sbjct: 19 REVQAEAGASATLSCEVAQA-QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAE 77
Query: 548 ADEYVCRA 555
A EY C A
Sbjct: 78 AGEYSCEA 85
Score = 31.2 bits (69), Expect = 7.2, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 2154
R A +A C + + ++W K ++++ S++ + A G T L++ +
Sbjct: 19 REVQAEAGASATLSCEVAQA-QTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAE 77
Query: 2155 ADEYVCRA 2162
A EY C A
Sbjct: 78 AGEYSCEA 85
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 56 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 115
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVME 142
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 811 VDIKTSSVY-------DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL 863
VD+ T ++Y D Y + E IG G++ RC + T +A K I S E
Sbjct: 11 VDLGTENLYFQSMVFSDGYVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSE- 69
Query: 864 IRKEIDIMNQL-HHPKLINLHDAFEDDDEMVLIFEVL 899
EI+I+ + HP +I L D ++D + L+ E++
Sbjct: 70 ---EIEILLRYGQHPNIITLKDVYDDGKHVYLVTELM 103
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 56 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 115
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVME 142
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL---EKELIRKEIDIMNQLHHPKLINLHD 884
+G G F + T +FA K +P S L ++E + EI I L H ++ H
Sbjct: 23 LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 82
Query: 885 AFEDDDEMVLIFEVLDR 901
FED+D + ++ E+ R
Sbjct: 83 FFEDNDFVFVVLELCRR 99
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 577 NVPPRFRD-----TAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGH-----FHVE 626
NVPP R A + ++V + G+P+P +TW +D E IE + F+ +
Sbjct: 9 NVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYD 68
Query: 627 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
SE L I+ D A Y +AEN G A + +++
Sbjct: 69 GSE----LIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 489 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVD 547
NA A + + C G P+PT++W K I ++ D LII V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 548 ADEYVCRAVNKGGVKSTKAELIIM 571
EY+C A NK G + L +
Sbjct: 82 EAEYICIAENKAGEQDATIHLKVF 105
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 2096 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVD 2154
NA A + + C G P+PT++W K I ++ D LII V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 2155 ADEYVCRAVNKGGVKSTKAELIIM 2178
EY+C A NK G + L +
Sbjct: 82 EAEYICIAENKAGEQDATIHLKVF 105
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 1429 VRDITVKAGEDFSIHVPFM----AFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVK 1484
R T+ A + S V FP+P W + I+ D + + L++K
Sbjct: 16 ARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIK 75
Query: 1485 NSQRSDGGQYRLQLKNPAGFDTATLHSRL 1513
+SD +Y +N AG AT+H ++
Sbjct: 76 KVDKSDEAEYICIAENKAGEQDATIHLKV 104
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLRNGREIS---SGARYRVETAGGVFRLHFNEVTDVDNGD 160
L + +TL C+A G P P W ++G I + +Y G L +V D +
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS--ELIIKKVDKSDEAE 84
Query: 161 YTCEAYNSVGFAHTSSRVKI 180
Y C A N G + +K+
Sbjct: 85 YICIAENKAGEQDATIHLKV 104
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLRNGREIS---SGARYRVETAGGVFRLHFNEVTDVDNGD 1767
L + +TL C+A G P P W ++G I + +Y G L +V D +
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS--ELIIKKVDKSDEAE 84
Query: 1768 YTCEAYNSVGFAHTSSRVKI 1787
Y C A N G + +K+
Sbjct: 85 YICIAENKAGEQDATIHLKV 104
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 36 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 95
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 96 LQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQLHHPK 878
+ IL +GTG+FG VH R R G +A K + V + E E +++ + HP
Sbjct: 8 FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF 67
Query: 879 LINLHDAFEDDDEMVLIFEVLD 900
+I + F+D ++ +I + ++
Sbjct: 68 IIRMWGTFQDAQQIFMIMDYIE 89
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 35 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 94
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 95 LQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 22 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 81
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 82 LQAVNFPFLVKLEFSFKDNSNLYMVME 108
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHP 877
+ Y++L IGTG++G + R + G I K + EK+++ E++++ +L HP
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65
Query: 878 KLINLHDAFED 888
++ +D D
Sbjct: 66 NIVRYYDRIID 76
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQL-HHP 877
+D+L IG G++ V R +KT I+A K + V+ + + + ++ E + Q +HP
Sbjct: 22 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 81
Query: 878 KLINLHDAFEDDDEMVLIFEVLD-----------RPHPPENLHADEFAGD-SLTLYWTPP 925
L+ LH F+ + + + E ++ R P E HA ++ + SL L +
Sbjct: 82 FLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEE--HARFYSAEISLALNYLHE 139
Query: 926 R---------DN------GGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGST 970
R DN G ++T+Y + K+ T S + TP + G
Sbjct: 140 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT--SXFCGTPNYIAPEILRGED 197
Query: 971 YEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSI 1018
Y F V + + L L + + + PFD+ G+ P +TED +
Sbjct: 198 YGFSV---DWWALG--VLMFEMMAGRSPFDIVGSSDNPD--QNTEDYL 238
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHP 877
+ Y++L IGTG++G + R + G I K + EK+++ E++++ +L HP
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65
Query: 878 KLINLHDAFED 888
++ +D D
Sbjct: 66 NIVRYYDRIID 76
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---I 870
+ ++ D +D ++ +GTG+FG V + +++GN +A K + ++ + I ++ I
Sbjct: 30 QNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRI 89
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ ++ P L+ L +F+D+ + ++ E
Sbjct: 90 LQAVNFPFLVKLEFSFKDNSNLYMVME 116
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 18 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 77
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 78 TFQDDEKL 85
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHP 877
+ Y++L IGTG++G + R + G I K + EK+++ E++++ +L HP
Sbjct: 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65
Query: 878 KLINLHDAFED 888
++ +D D
Sbjct: 66 NIVRYYDRIID 76
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 43 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 102
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 103 TFQDDEKL 110
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 29 KGSEQESVKEFLAKAKEDFLKKWESPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 86
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 87 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 142
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 15 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 74
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 75 TFQDDEKL 82
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 16 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 75
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 76 TFQDDEKL 83
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 17 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 76
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 77 TFQDDEKL 84
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 41 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 101 TFQDDEKL 108
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 38 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 98 TFQDDEKL 105
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 41 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 100
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 101 TFQDDEKL 108
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ IGTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTIGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E +
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYM 123
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 38 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 98 TFQDDEKL 105
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 42/228 (18%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQL-HHP 877
+D+L IG G++ V R +KT I+A + + V+ + + + ++ E + Q +HP
Sbjct: 54 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHP 113
Query: 878 KLINLHDAFEDDDEMVLIFEVLD-----------RPHPPENLHADEFAGD-SLTLYWTPP 925
L+ LH F+ + + + E ++ R P E HA ++ + SL L +
Sbjct: 114 FLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEE--HARFYSAEISLALNYLHE 171
Query: 926 R---------DN------GGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGST 970
R DN G ++T+Y + K+ T S++ TP + G
Sbjct: 172 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT--STFCGTPNYIAPEILRGED 229
Query: 971 YEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSI 1018
Y F V + + L L + + + PFD+ G+ P +TED +
Sbjct: 230 YGFSV---DWWALG--VLMFEMMAGRSPFDIVGSSDNPD--QNTEDYL 270
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYR-VETAGGVFRLH 149
P FI +++ + G+ + + +G P P W NGR + S ++ + + G+ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
F V D G Y C A N G A + ++ +
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYR-VETAGGVFRLH 1756
P FI +++ + G+ + + +G P P W NGR + S ++ + + G+ L
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
F V D G Y C A N G A + ++ +
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 183 PPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF 242
PPR ++P + I EG ++ +G +VS NGR VQSDD K V + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 243 IKE-IRKEDAGDY 254
I E +R DAG Y
Sbjct: 65 IFEVVRASDAGAY 77
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1790 PPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF 1849
PPR ++P + I EG ++ +G +VS NGR VQSDD K V + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 1850 IKE-IRKEDAGDY 1861
I E +R DAG Y
Sbjct: 65 IFEVVRASDAGAY 77
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLI 539
P I N + + + ++G P P +SW R + H I +E ++LI
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 572
V DA Y C A N+ G + +L ++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLI 2146
P I N + + + ++G P P +SW R + H I +E ++LI
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 2179
V DA Y C A N+ G + +L ++
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 579 PPRFR---DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSER--HA- 632
PPRF + D+G + +G P P ++WY + ++S + SE+ H+
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 633 ILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
I + AS D Y VA+N G + V++ +
Sbjct: 65 IFEVVRAS--DAGAYACVAKNRAGEATFTVQLDV 96
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 1145 DMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATD 1204
+M++ G + SG P P W +NG V D K SE RA+D
Sbjct: 14 NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASD 73
Query: 1205 SGSYTIQLVNTVGSDSASCKVYVVDK 1230
+G+Y N G + + ++ V+ K
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVLAK 99
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 38 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 98 TFQDDEKL 105
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 68 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 126
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 127 YIVGFYGAFYSDGEISICMEHMD 149
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ IGTG+FG V + +T
Sbjct: 8 KGXEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTIGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E +
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYM 123
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWESPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 37 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 97 TFQDDEKL 104
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWESPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 45 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 104
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 105 CFQDDEKL 112
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 42/228 (18%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQL-HHP 877
+D+L IG G++ V R +KT I+A K + V+ + + + ++ E + Q +HP
Sbjct: 7 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 66
Query: 878 KLINLHDAFEDDDEMVLIFEVLD-----------RPHPPENLHADEFAGD-SLTLYWTPP 925
L+ LH F+ + + + E ++ R P E HA ++ + SL L +
Sbjct: 67 FLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEE--HARFYSAEISLALNYLHE 124
Query: 926 R---------DN------GGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGST 970
R DN G ++T+Y + K+ T S + TP + G
Sbjct: 125 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT--SXFCGTPNYIAPEILRGED 182
Query: 971 YEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSI 1018
Y F V + + L L + + + PFD+ G+ P +TED +
Sbjct: 183 YGFSV---DWWALG--VLMFEMMAGRSPFDIVGSSDNPD--QNTEDYL 223
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 37 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 96
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 97 TFQDDEKL 104
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 40 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 99
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 100 TFQDDEKL 107
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F V RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 22 LGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 81
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 82 TFQDDEKL 89
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWESPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
++ I ++IG G F V+R G A K + + ++ + KEID++ QL+HP
Sbjct: 33 NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHP 92
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
+I + +F +D+E+ ++ E+ D
Sbjct: 93 NVIKYYASFIEDNELNIVLELAD 115
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + ++T
Sbjct: 9 KGXEQESVKEFLAKAKEDFLKKWESPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHKET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E++ I +E ++M +L HPKL+ L+
Sbjct: 11 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFI-EEAEVMMKLSHPKLVQLY 68
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+FE ++ + L FA ++L
Sbjct: 69 GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETL 105
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---IMNQLHH 876
D ++ ++ +GTG+FG V + ++TGN +A K + ++ + I ++ I+ ++
Sbjct: 34 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 93
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P L+ L +F+D+ + ++ E
Sbjct: 94 PFLVKLEFSFKDNSNLYMVME 114
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 345
V+E T + TL W+ + VT+Y ++ R T + + GL+
Sbjct: 16 VTETTATSVTLTWDSGNSE---PVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFS 72
Query: 346 EYLFHVMAVNENGMGPPLEGI 366
EY F V+AVN G GPP E +
Sbjct: 73 EYAFRVLAVNSIGRGPPSEAV 93
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQ 1952
V+E T + TL W+ + VT+Y ++ R T + + GL+
Sbjct: 16 VTETTATSVTLTWDSGNSE---PVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFS 72
Query: 1953 EYLFHVMAVNENGMGPPLEGI 1973
EY F V+AVN G GPP E +
Sbjct: 73 EYAFRVLAVNSIGRGPPSEAV 93
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 667 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKR----EHPMSSWIRVG 720
S P PP V + S+ L W D G++ +T Y ++ R E P V
Sbjct: 5 SSGPKPPIDLVVTETTATSVTLTW-----DSGNSEPVTYYGIQYRAAGTEGPFQEVDGVA 59
Query: 721 NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 754
TR++ I GLSP +Y FRV A N GR PS
Sbjct: 60 TTRYS---IGGLSPFSEYAFRVLAVNSIGRGPPS 90
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 902 PHPPENLHADEFAGDSLTLYWTPPRDNGGSE-ITNYVVEKKDYNSTVWTKVSSYVTTPFV 960
P PP +L E S+TL W D+G SE +T Y ++ + + + V T
Sbjct: 8 PKPPIDLVVTETTATSVTLTW----DSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRY 63
Query: 961 RVRNLAIGSTYEFRVMAENQYGLSKPALTI 990
+ L+ S Y FRV+A N G P+ +
Sbjct: 64 SIGGLSPFSEYAFRVLAVNSIGRGPPSEAV 93
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---IMNQLHH 876
D ++ ++ +GTG+FG V + ++TGN +A K + ++ + I ++ I+ ++
Sbjct: 34 DQFERIKTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 93
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P L+ L +F+D+ + ++ E
Sbjct: 94 PFLVKLEFSFKDNSNLYMVME 114
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 20/192 (10%)
Query: 285 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFIVQGL 341
D S+IT ++ T+HW P+ +T Y++ + P + + + T L
Sbjct: 9 DSSDITANSFTVHWVAPR----APITGYIIRHHAEHSVGRPRQDRVPPSRNSITL--TNL 62
Query: 342 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 401
G EY+ ++AVN PPL G + P D + V+ + +SW+ P
Sbjct: 63 NPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRD------LEVIASTPTSLL-ISWEPP 115
Query: 402 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS 461
++ Y I E G ++ + + S I N+ G Y +YA G S
Sbjct: 116 ----AVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDS 171
Query: 462 LPSSASNSVQIK 473
SS S+ K
Sbjct: 172 PASSKPVSINYK 183
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 20/192 (10%)
Query: 1892 DVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFIVQGL 1948
D S+IT ++ T+HW P+ +T Y++ + P + + + T L
Sbjct: 9 DSSDITANSFTVHWVAPR----APITGYIIRHHAEHSVGRPRQDRVPPSRNSITL--TNL 62
Query: 1949 TEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKP 2008
G EY+ ++AVN PPL G + P D + V+ + +SW+ P
Sbjct: 63 NPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRD------LEVIASTPTSLL-ISWEPP 115
Query: 2009 LDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLS 2068
++ Y I E G ++ + + S I N+ G Y +YA G S
Sbjct: 116 ----AVSVRYYRITYGETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVTGRGDS 171
Query: 2069 LPSSASNSVQIK 2080
SS S+ K
Sbjct: 172 PASSKPVSINYK 183
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 42/231 (18%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---VSHNLEKELIRKEIDIMNQL-HHP 877
+D+L IG G++ V R +KT I+A K + V+ + + + ++ E + Q +HP
Sbjct: 11 FDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHP 70
Query: 878 KLINLHDAFEDDDEMVLIFEVLD-----------RPHPPENLHADEFAGD-SLTLYWTPP 925
L+ LH F+ + + + E ++ R P E HA ++ + SL L +
Sbjct: 71 FLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEE--HARFYSAEISLALNYLHE 128
Query: 926 R---------DN------GGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGST 970
R DN G ++T+Y + K+ T S + TP + G
Sbjct: 129 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTT--SXFCGTPNYIAPEILRGED 186
Query: 971 YEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLV 1021
Y F V + + L L + + + PFD+ G+ P +TED + V
Sbjct: 187 YGFSV---DWWALG--VLMFEMMAGRSPFDIVGSSDNPD--QNTEDYLFQV 230
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E++ I +E ++M +L HPKL+ L+
Sbjct: 14 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFI-EEAEVMMKLSHPKLVQLY 71
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+FE ++ + L FA ++L
Sbjct: 72 GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETL 108
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAK--FIPVSHNLEKELIRKEIDIMNQLH 875
V Y++++++G GA+G+V + +R+TG + A K F ++ + + +EI I+ +L
Sbjct: 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS 66
Query: 876 -HPKLINLHDAF--EDDDEMVLIFEVLDRPHPPENLHA 910
H ++NL + ++D ++ L+F+ ++ +LHA
Sbjct: 67 GHENIVNLLNVLRADNDRDVYLVFDYME-----TDLHA 99
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 211
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 212 EMYNSYLVGDELWVVMEFLE 231
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 479 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT--Y 536
+AP I ++ ++ + + +C I+ P P + W + + + + + +T
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 537 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 579
TL+I V DA Y AVN+ GV + L + P +P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 2086 KAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT--Y 2143
+AP I ++ ++ + + +C I+ P P + W + + + + + +T
Sbjct: 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 2144 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVP 2186
TL+I V DA Y AVN+ GV + L + P +P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 573 APKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGG---HFHVETSE 629
AP F P+ + +G++V ++ + P PK+ W R+NE+++ + + +
Sbjct: 15 APMFIYKPQSKKVL---EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG 71
Query: 630 RHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPD 671
R +L I+D + D Y V A N+ G+ + ++ ++ RP+
Sbjct: 72 RVTLL-IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG----ARYRVETAGGVF 146
P FI + V G + L+C+ + P PK W RN + + Y+ T G
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT--GRV 73
Query: 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
L +V D G YT A N G ++R+ + P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG----ARYRVETAGGVF 1753
P FI + V G + L+C+ + P PK W RN + + Y+ T G
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT--GRV 73
Query: 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
L +V D G YT A N G ++R+ + P
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 1434 VKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVH-KQLTMNSASLVVKNSQRSDGG 1492
V G+ + A P P FW N+ ++ + R+ Q +L++K+ + D G
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 1493 QYRLQLKNPAGFDTATLHSRLRTLPDSVNP 1522
Y + N AG T + P+ P
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ IGTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTIGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E++ I +E ++M +L HPKL+ L+
Sbjct: 11 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFI-EEAEVMMKLSHPKLVQLY 68
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+FE ++ + L FA ++L
Sbjct: 69 GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETL 105
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 6/183 (3%)
Query: 1614 WVSEGKSIGSERGSTAQFLERE----VGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRI 1669
+V + K S GS ++ +R G IWL+ N+ + V+ L +G +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193
Query: 1670 IAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLV-VPLGKLLTLQCEATGTPVPK 1728
+ ++ E +K + + L D+V + GK L L C G P P+
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 1729 CRWLRNGREISSGARYRVE-TAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
WL+N + ++S ++ AG N V+ D+G Y N G + V +
Sbjct: 254 VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313
Query: 1788 GTP 1790
P
Sbjct: 314 FIP 316
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 2/156 (1%)
Query: 30 GGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGE 89
G IWL+ N+ + V+ L +G + + ++ E +K
Sbjct: 161 GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN 220
Query: 90 KPDFIVPLKDLV-VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFR 147
+ + L D+V + GK L L C G P P+ WL+N + ++S ++ AG
Sbjct: 221 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY 280
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 183
N V+ D+G Y N G + V + P
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 121 KCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS----------VG 170
K W NG I R + G L NE T D G Y E ++ G
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 171 FAHTSS-----RVKIGTPPRIDR------MPNALYIPEGDNTKVKIFYAGDQPMEVSLTK 219
A+ + R+K +R +P+ + I EG + GD P EVS K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
Query: 220 NGRVVQSDDR 229
N + + SDD
Sbjct: 259 NEKALASDDH 268
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 48/130 (36%), Gaps = 21/130 (16%)
Query: 1728 KCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS----------VG 1777
K W NG I R + G L NE T D G Y E ++ G
Sbjct: 139 KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198
Query: 1778 FAHTSS-----RVKIGTPPRIDR------MPNALYIPEGDNTKVKIFYAGDQPMEVSLTK 1826
A+ + R+K +R +P+ + I EG + GD P EVS K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
Query: 1827 NGRVVQSDDR 1836
N + + SDD
Sbjct: 259 NEKALASDDH 268
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 584 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNV 642
D +G+ + + G P P+++W ++ + + S H +++ + R A TI S
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 643 DTAPYRVVAENDLGMDSAIVKIQI 666
D+ Y +V +N G +++ + +
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTVSV 313
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 34/82 (41%)
Query: 1146 MTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRATDS 1205
+T+ G+ +T G P P W N ++ D + +T Y + DS
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 1206 GSYTIQLVNTVGSDSASCKVYV 1227
G Y + + N GS+++ V V
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSV 313
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 493 IQNHNA-QFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADE 550
IQ A C + G P P +SWLK + + ++ F G T IN V D+ +
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGK 293
Query: 551 YVCRAVNKGGVKST 564
Y NK G +++
Sbjct: 294 YGLVVKNKYGSETS 307
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 2100 IQNHNA-QFQCTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADE 2157
IQ A C + G P P +SWLK + + ++ F G T IN V D+ +
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGK 293
Query: 2158 YVCRAVNKGGVKST 2171
Y NK G +++
Sbjct: 294 YGLVVKNKYGSETS 307
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 1426 LSGVRDI-TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVK 1484
L G+ D+ T++ G+ ++ P P W N+ + D K +A +
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 1485 NSQRSDGGQYRLQLKNPAGFDTA 1507
+D G+Y L +KN G +T+
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETS 307
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 65 YIVGFYGAFYSDGEISICMEHMD 87
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E++ I +E ++M +L HPKL+ L+
Sbjct: 9 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFI-EEAEVMMKLSHPKLVQLY 66
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+FE ++ + L FA ++L
Sbjct: 67 GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETL 103
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 134
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 135 EMYNSYLVGDELWVVMEFLE 154
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 32 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 91
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 92 EMYNSYLVGDELWVVMEFLE 111
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFI---PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + V E E E I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I S +L+K + +E+ IM L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQK--LFREVRIMKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVME 93
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 65 YIVGFYGAFYSDGEISICMEHMD 87
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 827 EIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF 886
+IG G+ G+V RE+ +G A K + + +EL+ E+ IM H ++ ++ ++
Sbjct: 52 KIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSY 111
Query: 887 EDDDEMVLIFEVL 899
+E+ ++ E L
Sbjct: 112 LVGEELWVLMEFL 124
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I S +L+K + +E+ IM L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQK--LFREVRIMKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVME 93
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFI---PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + V E E E I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKEIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 30 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 89
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 90 EMYNSYLVGDELWVVMEFLE 109
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I S +L+K + +E+ IM L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQK--LFREVRIMKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVME 93
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E + I +E ++M +L HPKL+ L+
Sbjct: 31 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIKEGSMSEDDFI-EEAEVMMKLSHPKLVQLY 88
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+FE ++ + L FA ++L
Sbjct: 89 GVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETL 125
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 21 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 80
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 81 EMYNSYLVGDELWVVMEFLE 100
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 65 YIVGFYGAFYSDGEISICMEHMD 87
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 167
L C ATG+PVP W ++G +S+ + GV ++ + ++ D G YTC A
Sbjct: 26 FVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLG--DTGRYTCIAST 83
Query: 168 SVGFAHTSSRVKI 180
G A S+ +++
Sbjct: 84 PSGEATWSAYIEV 96
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 1715 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 1774
L C ATG+PVP W ++G +S+ + GV ++ + ++ D G YTC A
Sbjct: 26 FVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLG--DTGRYTCIAST 83
Query: 1775 SVGFAHTSSRVKI 1787
G A S+ +++
Sbjct: 84 PSGEATWSAYIEV 96
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I S +L+K + +E+ IM L+H
Sbjct: 8 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQK--LFREVRIMKVLNH 65
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 66 PNIVKLFEVIETEKTLYLVME 86
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 285 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 339
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 193 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 244
Query: 340 GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWD 399
LT G EY+ ++A+N P L G + P D + VV + +SWD
Sbjct: 245 NLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRD------LEVVAATPTSLL-ISWD 297
Query: 400 KPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG 459
P ++ Y I E G ++ + + S I L G Y VYA G
Sbjct: 298 AP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG 353
Query: 460 LSLPSSASNSVQIK 473
S SS S+ +
Sbjct: 354 DSPASSKPISINYR 367
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 24/194 (12%)
Query: 1892 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 1946
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 193 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 244
Query: 1947 GLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWD 2006
LT G EY+ ++A+N P L G + P D + VV + +SWD
Sbjct: 245 NLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRD------LEVVAATPTSLL-ISWD 297
Query: 2007 KPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAG 2066
P ++ Y I E G ++ + + S I L G Y VYA G
Sbjct: 298 AP----AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRG 353
Query: 2067 LSLPSSASNSVQIK 2080
S SS S+ +
Sbjct: 354 DSPASSKPISINYR 367
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 287 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 345
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 104 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 160
Query: 346 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 405
EY+ V +V E PL G + K+ D P+ GI + + + + W P
Sbjct: 161 EYVVSVSSVYEQHESTPLRG----RQKTGLDSPT--GID-FSDITANSFTVHWIAPR--- 210
Query: 406 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 456
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 211 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 260
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 1894 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 1952
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 104 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 160
Query: 1953 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 2012
EY+ V +V E PL G + K+ D P+ GI + + + + W P
Sbjct: 161 EYVVSVSSVYEQHESTPLRG----RQKTGLDSPT--GID-FSDITANSFTVHWIAPR--- 210
Query: 2013 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 2063
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 211 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 260
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMNQLHHPKL 879
Y+ L +IG G FG V + R RKTG A K + + + E I +EI I+ L H +
Sbjct: 20 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 880 INL 882
+NL
Sbjct: 80 VNL 82
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
+ D +IG G+ G+V R +G + A K + + +EL+ E+ IM H ++
Sbjct: 25 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV 84
Query: 881 NLHDAFEDDDEMVLIFEVLD 900
+++++ DE+ ++ E L+
Sbjct: 85 EMYNSYLVGDELWVVMEFLE 104
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 152
+ PL D V LGK + L+CE + +P +W +NG + R +V G + +L
Sbjct: 10 ILTPLTDQTVNLGKEICLKCEISEN-IPG-KWTKNGLPVQESDRLKVVQKGRIHKLVIAN 67
Query: 153 VTDVDNGDYTC--EAYN 167
D GDY +AYN
Sbjct: 68 ALTEDEGDYVFAPDAYN 84
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 1759
+ PL D V LGK + L+CE + +P +W +NG + R +V G + +L
Sbjct: 10 ILTPLTDQTVNLGKEICLKCEISEN-IPG-KWTKNGLPVQESDRLKVVQKGRIHKLVIAN 67
Query: 1760 VTDVDNGDYTC--EAYN 1774
D GDY +AYN
Sbjct: 68 ALTEDEGDYVFAPDAYN 84
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---PVSHNLEKELIRKEIDIMNQLHHPK 878
++IL+ IG GAFG V + + +FA K + + E R+E D++
Sbjct: 76 FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW 135
Query: 879 LINLHDAFEDDDEMVLIFE 897
+ LH AF+DD+ + L+ +
Sbjct: 136 ITTLHYAFQDDNNLYLVMD 154
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL-HHPK 878
D Y + E IG G++ RC + T +A K I S E EI+I+ + HP
Sbjct: 27 DGYVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSE----EIEILLRYGQHPN 82
Query: 879 LINLHDAFEDDDEMVLIFEVL 899
+I L D ++D + L+ E++
Sbjct: 83 IITLKDVYDDGKHVYLVTELM 103
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD-TTFIVQGLTEG 344
V +T T T+ W PP + G + YV+E WI + D T F + GL
Sbjct: 16 VDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTD 75
Query: 345 QEYLFHVMAVNENGMGPPLEGINPIKAK 372
+ V AVN G P PI K
Sbjct: 76 AKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHD-TTFIVQGLTEG 1951
V +T T T+ W PP + G + YV+E WI + D T F + GL
Sbjct: 16 VDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTD 75
Query: 1952 QEYLFHVMAVNENGMGPPLEGINPIKAK 1979
+ V AVN G P PI K
Sbjct: 76 AKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1238 LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSS-FVRSPAYDVFGLE 1296
L V +T + ++ W+PP G + + YV+E T W + + + + GL
Sbjct: 14 LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLP 73
Query: 1297 TNRQYRFRVRAENQYGVSEPLELDNSITAK 1326
T+ + RV+A N G SEP I K
Sbjct: 74 TDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 677 TVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWI-----RVGNTRFTTMAITG 731
TV+ + ++ + WR P G + + Y++E WI + T+FT ITG
Sbjct: 15 TVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFT---ITG 71
Query: 732 LSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDT 765
L + RV A N G S+P S I K++
Sbjct: 72 LPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 394 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 453
V + W P G + + GY ++ G++ W N + ++ I L + RV
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 454 AQNEAGLSLPSSASNSVQIKD 474
A N AG S P S + +K+
Sbjct: 84 AVNAAGASEPKYYSQPILVKE 104
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 2001 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 2060
V + W P G + + GY ++ G++ W N + ++ I L + RV
Sbjct: 24 VTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVK 83
Query: 2061 AQNEAGLSLPSSASNSVQIKD 2081
A N AG S P S + +K+
Sbjct: 84 AVNAAGASEPKYYSQPILVKE 104
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 20 DCYIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTP 79
D Y++E G W+ N + + F++ L R+ AVNA G SEP + P
Sbjct: 40 DGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQP 99
Query: 80 VKICE 84
+ + E
Sbjct: 100 ILVKE 104
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 65 YIVGFYGAFYSDGEISICMEHMD 87
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 6 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 64
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 65 YIVGFYGAFYSDGEISICMEHMD 87
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---------PVSHNLEKELIRKEIDI 870
D ++ + +GTG+FG V + ++TGN +A K + + H L ++ I++ ++
Sbjct: 42 DQFERIRTLGTGSFGRVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRIQQAVNF 101
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
P L+ L +F+D+ + ++ E
Sbjct: 102 ------PFLVKLEFSFKDNSNLYMVLE 122
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 9 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 67
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 68 YIVGFYGAFYSDGEISICMEHMD 90
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGXEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 28/160 (17%)
Query: 522 TPSARHHIFAEGDTY---------------TLIINSVYGVDADEYVCRAVNKGGVKSTKA 566
TPS R + F EG T TLII D+ +Y+C N G +S +
Sbjct: 244 TPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 303
Query: 567 ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE 626
L + + P T D G V +TG P ++W +D + I GH
Sbjct: 304 VLTVTAPLSAKIDP---PTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---GH---- 353
Query: 627 TSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQI 666
++L I D Y+ ND A ++++
Sbjct: 354 ---SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 16/157 (10%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEVTDVD 157
V L +L C A P P RW + R+ + RV+ G L + D
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVED 284
Query: 158 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSL 217
+G Y C NSVG + + + P P + G Y G+ VS
Sbjct: 285 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 344
Query: 218 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 254
K+G+ + + ++ I+ ++KED G Y
Sbjct: 345 MKDGKAIGHSES----------VLRIESVKKEDKGMY 371
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 16/157 (10%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLR----NGREISSGARYRVETAGGVFRLHFNEVTDVD 1764
V L +L C A P P RW + R+ + RV+ G L + D
Sbjct: 227 VELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT--LIIKDAVVED 284
Query: 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSL 1824
+G Y C NSVG + + + P P + G Y G+ VS
Sbjct: 285 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 344
Query: 1825 TKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDY 1861
K+G+ + + ++ I+ ++KED G Y
Sbjct: 345 MKDGKAIGHSES----------VLRIESVKKEDKGMY 371
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 32/180 (17%)
Query: 1630 QFLEREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKI 1689
QF++ E+ + L C + SF +EG + ++ + + + ++ +
Sbjct: 223 QFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 282
Query: 1690 -------C---EFVGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKC 1729
C VGGE + ++ PL + P G+ C+ TG P+
Sbjct: 283 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 342
Query: 1730 RWLRNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 1788
W+++G+ I S + R+E+ V D G Y C N A S+ +K+G
Sbjct: 343 SWMKDGKAIGHSESVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 391
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 22/107 (20%)
Query: 86 VGGEKPDFIV----PLKDLVVP------LGKLLTLQCEATGTPVPKCRWLRNGREIS-SG 134
VGGE + ++ PL + P G+ C+ TG P+ W+++G+ I S
Sbjct: 296 VGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 355
Query: 135 ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181
+ R+E+ V D G Y C N A S+ +K+G
Sbjct: 356 SVLRIES-----------VKKEDKGMYQCFVRNDRESAEASAELKLG 391
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 494 QNHNAQFQCTITGCPKPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADE 550
+ H QF C G P P I WL + + + R +F +G TL + D
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGT 455
Query: 551 YVCRAVNKGGVKSTKAEL 568
Y+C A N GG S A L
Sbjct: 456 YLCIAANAGGNDSMPAHL 473
Score = 40.4 bits (93), Expect = 0.011, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPS---ARHHIFAEGDTYTLIINSVYGVDADE 2157
+ H QF C G P P I WL + + + R +F +G TL + D
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGT 455
Query: 2158 YVCRAVNKGGVKSTKAEL 2175
Y+C A N GG S A L
Sbjct: 456 YLCIAANAGGNDSMPAHL 473
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 70 KSEPSICTTPVKICEFVGGEK----PDFIVP--------------LKDLVVPLGKLLTLQ 111
+ +P+ C TP EFV G++ PD ++P + + V G +
Sbjct: 352 RQQPT-CATP----EFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFV 406
Query: 112 CEATGTPVPKCRWLRNGRE-ISSGARYRVET-AGGVFRLHFNEVTDVDNGDYTCEAYNSV 169
C A G P P WL + +S+ + R+ G + + +V DNG Y C A N+
Sbjct: 407 CRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ--DNGTYLCIAANAG 464
Query: 170 G 170
G
Sbjct: 465 G 465
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 1677 KSEPSICTTPVKICEFVGGEK----PDFIVP--------------LKDLVVPLGKLLTLQ 1718
+ +P+ C TP EFV G++ PD ++P + + V G +
Sbjct: 352 RQQPT-CATP----EFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFV 406
Query: 1719 CEATGTPVPKCRWLRNGRE-ISSGARYRVET-AGGVFRLHFNEVTDVDNGDYTCEAYNSV 1776
C A G P P WL + +S+ + R+ G + + +V DNG Y C A N+
Sbjct: 407 CRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ--DNGTYLCIAANAG 464
Query: 1777 G 1777
G
Sbjct: 465 G 465
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 122
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMNQLHHPKL 879
Y+ L +IG G FG V + R RKTG A K + + + E I +EI I+ L H +
Sbjct: 20 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 880 INL 882
+NL
Sbjct: 80 VNL 82
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMNQLHHPKL 879
Y+ L +IG G FG V + R RKTG A K + + + E I +EI I+ L H +
Sbjct: 20 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 79
Query: 880 INL 882
+NL
Sbjct: 80 VNL 82
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 25 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 83
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 84 YIVGFYGAFYSDGEISICMEHMD 106
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
D ++ + E+G G GVV + + +G + A K I + + ++IR E+ ++++ + P
Sbjct: 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIR-ELQVLHECNSP 91
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
++ + AF D E+ + E +D
Sbjct: 92 YIVGFYGAFYSDGEISICMEHMD 114
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGXEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 6/174 (3%)
Query: 1623 SERGSTAQFLERE----VGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKS 1678
S GS ++ +R G IWL+ N+ + V+ L +G + + ++
Sbjct: 38 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 97
Query: 1679 EPSICTTPVKICEFVGGEKPDFIVPLKDLV-VPLGKLLTLQCEATGTPVPKCRWLRNGRE 1737
E +K + + L D+V + GK L L C G P P+ WL+N +
Sbjct: 98 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157
Query: 1738 ISSGARYRVE-TAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 1790
++ ++ AG N V+ D+G Y N G + V + P
Sbjct: 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 2/156 (1%)
Query: 30 GGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGE 89
G IWL+ N+ + V+ L +G + + ++ E +K
Sbjct: 56 GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN 115
Query: 90 KPDFIVPLKDLV-VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVE-TAGGVFR 147
+ + L D+V + GK L L C G P P+ WL+N + ++ ++ AG
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175
Query: 148 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 183
N V+ D+G Y N G + V + P
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 502 CTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 560
C + G P P +SWLK + + + ++ F G T IN V D+ +Y NK G
Sbjct: 139 CNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198
Query: 561 VKST 564
+++
Sbjct: 199 SETS 202
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 2109 CTITGCPKPTISWLKGSREITPSARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167
C + G P P +SWLK + + + ++ F G T IN V D+ +Y NK G
Sbjct: 139 CNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 198
Query: 2168 VKST 2171
+++
Sbjct: 199 SETS 202
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 584 DTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVE-TSERHAILTIRDASNV 642
D +G+ + + G P P+++W ++ + + H +++ + R A TI S
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184
Query: 643 DTAPYRVVAENDLGMDSAIVKIQI 666
D+ Y +V +N G +++ + +
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSV 208
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 1426 LSGVRDI-TVKAGEDFSIHVPFMAFPQPAAFWFANDSIIDDSDTRVHKQLTMNSASLVVK 1484
L G+ D+ T++ G+ ++ P P W N+ + +D K +A +
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTIN 179
Query: 1485 NSQRSDGGQYRLQLKNPAGFDTA 1507
+D G+Y L +KN G +T+
Sbjct: 180 GVSTADSGKYGLVVKNKYGSETS 202
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH----NLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I + +L+K + +E+ IM L+H
Sbjct: 13 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK--LFREVRIMKILNH 70
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + LI E
Sbjct: 71 PNIVKLFEVIETEKTLYLIME 91
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 87 GGEKPDFIV-PLKDLVVPLGKLLTLQCEAT--GTPVPKCRWLRNGREISSGARYRVETAG 143
G P I+ PL+D V G+ + L+CE + GTPV WL++ + I +Y V G
Sbjct: 4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPV---HWLKDRKAIRKSQKYDVVCEG 60
Query: 144 GVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 183
+ L + D G+YTCE S A K P
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 1694 GGEKPDFIV-PLKDLVVPLGKLLTLQCEAT--GTPVPKCRWLRNGREISSGARYRVETAG 1750
G P I+ PL+D V G+ + L+CE + GTPV WL++ + I +Y V G
Sbjct: 4 GSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTPV---HWLKDRKAIRKSQKYDVVCEG 60
Query: 1751 GVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 1790
+ L + D G+YTCE S A K P
Sbjct: 61 TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100
Score = 37.4 bits (85), Expect = 0.087, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 483 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 542
II PL + + + +C ++ P + WLK + I S ++ + EG L+I
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 543 VYGVDADEYVC 553
DA EY C
Sbjct: 70 ASLKDAGEYTC 80
Score = 37.4 bits (85), Expect = 0.087, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 2090 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINS 2149
II PL + + + +C ++ P + WLK + I S ++ + EG L+I
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 2150 VYGVDADEYVC 2160
DA EY C
Sbjct: 70 ASLKDAGEYTC 80
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH----NLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I + +L+K + +E+ IM L+H
Sbjct: 16 NYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK--LFREVRIMKILNH 73
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + LI E
Sbjct: 74 PNIVKLFEVIETEKTLYLIME 94
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 8 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 65
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L+ L +F+D+ + ++ E
Sbjct: 66 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVME 121
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR--KEIDIMNQLHHPKL 879
Y+ L +IG G FG V + R RKTG A K + + + E I +EI I+ L H +
Sbjct: 19 YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 78
Query: 880 INL 882
+NL
Sbjct: 79 VNL 81
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEID---IMNQLHH 876
D ++ ++ +GTG+FG V + +TGN +A K + ++ + I ++ I+ ++
Sbjct: 27 DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 86
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P L+ L +F+D+ + ++ E
Sbjct: 87 PFLVKLEFSFKDNSNLYMVME 107
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 40.0 bits (92), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE---LIRKEIDIMNQLHHPKLINLHD 884
+G G+F RE T +A K + H +++ + +E D+M++L HP + L+
Sbjct: 38 LGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYF 97
Query: 885 AFEDDDEM 892
F+DD+++
Sbjct: 98 TFQDDEKL 105
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 484 IVPLRNANAIQNHNAQFQ--CTITGCPKPTIS-WLKGSREITPSARHHIFAEGD-----T 535
+V + A+ + +F CTI S W + + + +++ + GD
Sbjct: 213 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 272
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 595
TL I+S D+ ++C A N G + L ++ N+ P T + + GENV
Sbjct: 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332
Query: 596 VKIPFTGYPKPK 607
+ + + +PKP+
Sbjct: 333 LIVEYEAFPKPE 344
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A + I S +L+K + +E+ IM L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQK--LFREVRIMKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVME 93
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 484 IVPLRNANAIQNHNAQFQ--CTITGCPKPTIS-WLKGSREITPSARHHIFAEGD-----T 535
+V + A+ + +F CTI S W + + + +++ + GD
Sbjct: 188 VVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 247
Query: 536 YTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVV 595
TL I+S D+ ++C A N G + L ++ N+ P T + + GENV
Sbjct: 248 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 307
Query: 596 VKIPFTGYPKPK 607
+ + + +PKP+
Sbjct: 308 LIVEYEAFPKPE 319
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A + I S +L+K + +E+ IM L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQK--LFREVRIMKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVME 93
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 35/129 (27%)
Query: 1000 DVPGAPGAPKGVDSTED--SISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIP 1057
+P AP P ST + +I+L W+KP DG SP+ RYI+E
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILE------------------ 56
Query: 1058 DTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQG 1117
S W S+ + S V L+ Y+FR+CAVN G+G
Sbjct: 57 -MSENNAPWTVLLASVDPKATSVT-------------VKGLVPARSYQFRLCAVNDVGKG 102
Query: 1118 PWSSSSDII 1126
+S ++ +
Sbjct: 103 QFSKDTERV 111
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1231 PSPPQGPL-DVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFV--RS 1287
P P+ P+ +S + + +L+W P D G SP+ Y++E E+ W+ L + V ++
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSEN-NAPWTVLLASVDPKA 75
Query: 1288 PAYDVFGLETNRQYRFRVRAENQYG 1312
+ V GL R Y+FR+ A N G
Sbjct: 76 TSVTVKGLVPARSYQFRLCAVNDVG 100
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEG 344
+S + + L W P +DG + Y++E + + P + +++ T+ V+GL
Sbjct: 28 LSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA 86
Query: 345 QEYLFHVMAVNENGMG 360
+ Y F + AVN+ G G
Sbjct: 87 RSYQFRLCAVNDVGKG 102
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTT-CHDTTFIVQGLTEG 1951
+S + + L W P +DG + Y++E + + P + +++ T+ V+GL
Sbjct: 28 LSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPA 86
Query: 1952 QEYLFHVMAVNENGMG 1967
+ Y F + AVN+ G G
Sbjct: 87 RSYQFRLCAVNDVGKG 102
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 378 PSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP- 434
P P PV T V +NL+W KP D G S + Y ++ E ++A V +A P
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSE--NNAPWTVLLASVDPK 74
Query: 435 -SQINIPNLIEGRQYEFRVYAQNEAG----------LSLPSSASNS 469
+ + + L+ R Y+FR+ A N+ G +SLP S +S
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS 120
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 1985 PSPPGIPVVT--QVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP- 2041
P P PV T V +NL+W KP D G S + Y ++ E ++A V +A P
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSE--NNAPWTVLLASVDPK 74
Query: 2042 -SQINIPNLIEGRQYEFRVYAQNEAG----------LSLPSSASNS 2076
+ + + L+ R Y+FR+ A N+ G +SLP S +S
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS 120
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVK 81
YI+E E + + S +V LV Y+FR+ AVN +GK + S T V
Sbjct: 53 YILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 82 ICE 84
+ E
Sbjct: 113 LPE 115
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE-----LIRKEIDIMNQLHH 876
Y I E +G G+FG V KT A KFI S L K+ + +EI + L H
Sbjct: 11 YIIRETLGEGSFGKVKLATHYKTQQKVALKFI--SRQLLKKSDMHMRVEREISYLKLLRH 68
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P +I L+D ++V++ E
Sbjct: 69 PHIIKLYDVITTPTDIVMVIE 89
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPKLINLHD 884
+G G+F V+R TG A K I + ++++ E+ I QL HP ++ L++
Sbjct: 19 LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78
Query: 885 AFEDDDEMVLIFEV 898
FED + + L+ E+
Sbjct: 79 YFEDSNYVYLVLEM 92
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 1229 DKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGF-WSKL-SSFVR 1286
DKP P P I S ++W PP D+GG+ I YVVE E + G W + S R
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 1287 SPAYDVFGLETNRQYRFRVRA---ENQYGVSEPL 1317
D L YR RV Q VSE L
Sbjct: 76 EHLCDR--LNPGCFYRLRVYCISDGGQSAVSESL 107
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 917 SLTLYWTPPRDNGGSEITNYVVEKKD-YNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRV 975
S + W PP+DNGG+ I YVVE + N W + S T + R L G Y RV
Sbjct: 34 SFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDR-LNPGCFYRLRV 92
Query: 976 MAENQYGLS 984
+ G S
Sbjct: 93 YCISDGGQS 101
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 378 PSPPGIPVVTQVGGDF----VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 433
P PGIPV V G ++WD P D+GG+ I Y ++ E GS+ + + A
Sbjct: 15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAE-GSNGNKWEMIYSGA 73
Query: 434 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 478
+ L G Y RVY ++ G S+ S S+ ++ P +
Sbjct: 74 TREHLCDRLNPGCFYRLRVYCISDGGQ---SAVSESLLVQTPAVS 115
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 1985 PSPPGIPVVTQVGGDF----VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICA 2040
P PGIPV V G ++WD P D+GG+ I Y ++ E GS+ + + A
Sbjct: 15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAE-GSNGNKWEMIYSGA 73
Query: 2041 PSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAA 2085
+ L G Y RVY ++ G S+ S S+ ++ P +
Sbjct: 74 TREHLCDRLNPGCFYRLRVYCISDGGQ---SAVSESLLVQTPAVS 115
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 668 DRPDPPQFPTVEDIGHD-SLALVWRAPIWDGGSNITNYIVEKREHPMSS-WIRVGNTRFT 725
D+P P P+V+ H S + W P +GG+ I Y+VE E + W + +
Sbjct: 16 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATR 75
Query: 726 TMAITGLSPGHQYEFRVYAENVYGRS 751
L+PG Y RVY + G+S
Sbjct: 76 EHLCDRLNPGCFYRLRVYCISDGGQS 101
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 288 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 320
+I H+ + W+PPK +GG + YVVE + S
Sbjct: 29 KIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1895 EITKHTCTLHWNPPKYDGGLKVTHYVVERRDIS 1927
+I H+ + W+PPK +GG + YVVE + S
Sbjct: 29 KIHSHSFKITWDPPKDNGGATINKYVVEMAEGS 61
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 822 YDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQL 874
+++L +G G +G V + R+ TG IFA K + V + + + E +I+ ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVL 899
HP +++L AF+ ++ LI E L
Sbjct: 79 KHPFIVDLIYAFQTGGKLYLILEYL 103
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 394 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 453
+ L W PL DGGS I Y ++ + D + V + + + +L+ G+ Y FR+
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQG--SEVECTVSSLLPGKTYSFRLR 83
Query: 454 AQNEAGL 460
A N+ G
Sbjct: 84 AANKMGF 90
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 2001 VNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVY 2060
+ L W PL DGGS I Y ++ + D + V + + + +L+ G+ Y FR+
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQG--SEVECTVSSLLPGKTYSFRLR 83
Query: 2061 AQNEAGL 2067
A N+ G
Sbjct: 84 AANKMGF 90
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 918 LTLYWTPPRDNGGSEITNYVVE----KKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEF 973
+ L W PP +GGS I+ Y VE +KD V+ T V +L G TY F
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT-----VSSLLPGKTYSF 80
Query: 974 RVMAENQYGL 983
R+ A N+ G
Sbjct: 81 RLRAANKMGF 90
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 31/77 (40%)
Query: 686 LALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAE 745
+ L W P+ DGGS I+ Y VE V ++ L PG Y FR+ A
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAA 85
Query: 746 NVYGRSDPSTTSDLITT 762
N G S D+ T
Sbjct: 86 NKMGFGPFSEKCDITTA 102
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 296 LHWNPPKYDGGLKVTHYVVERRDISM--PHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 353
L W PP DGG ++ Y VE I P + + T V L G+ Y F + A
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT---VSSLLPGKTYSFRLRA 84
Query: 354 VNENGMGP 361
N+ G GP
Sbjct: 85 ANKMGFGP 92
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 1903 LHWNPPKYDGGLKVTHYVVERRDISM--PHWICISTTCHDTTFIVQGLTEGQEYLFHVMA 1960
L W PP DGG ++ Y VE I P + + T V L G+ Y F + A
Sbjct: 28 LRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT---VSSLLPGKTYSFRLRA 84
Query: 1961 VNENGMGP 1968
N+ G GP
Sbjct: 85 ANKMGFGP 92
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 34/108 (31%)
Query: 1018 ISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSER 1077
I L W P DGGSPI Y VE I D+ + GSE
Sbjct: 26 IQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--------------------GSEV 65
Query: 1078 GSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSSDI 1125
T V+SL+ Y FR+ A N G GP+S DI
Sbjct: 66 ECT--------------VSSLLPGKTYSFRLRAANKMGFGPFSEKCDI 99
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 21/73 (28%)
Query: 1250 LSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVF----------GLETNR 1299
L W PPL DGGSPI+ Y VE +S + +V+ L +
Sbjct: 28 LRWGPPLVDGGSPISCYSVE-----------MSPIEKDEPREVYQGSEVECTVSSLLPGK 76
Query: 1300 QYRFRVRAENQYG 1312
Y FR+RA N+ G
Sbjct: 77 TYSFRLRAANKMG 89
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 822 YDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIP----VSHNLEKELIRKEIDIMNQL 874
+++L +G G +G V + R+ TG IFA K + V + + + E +I+ ++
Sbjct: 19 FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78
Query: 875 HHPKLINLHDAFEDDDEMVLIFEVL 899
HP +++L AF+ ++ LI E L
Sbjct: 79 KHPFIVDLIYAFQTGGKLYLILEYL 103
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 10 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 69
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 70 LTALKYAFQTHDRLCFVME 88
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 67 LTALKYAFQTHDRLCFVME 85
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVF--RLHFN 151
DL+V G+ TL C+A G P P W + G + + + + +G +F R+
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 152 EVTDVDNGDYTCEAYNSVGFA 172
+ D G Y C A N +G A
Sbjct: 78 RKSRPDEGVYVCVARNYLGEA 98
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVF--RLHFN 1758
DL+V G+ TL C+A G P P W + G + + + + +G +F R+
Sbjct: 18 DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 1759 EVTDVDNGDYTCEAYNSVGFA 1779
+ D G Y C A N +G A
Sbjct: 78 RKSRPDEGVYVCVARNYLGEA 98
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 67 LTALKYAFQTHDRLCFVME 85
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLTKLEFSFKDNSNLYMVME 122
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGSEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLTKLEFSFKDNSNLYMVME 122
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 785 RGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKT 844
+G E V ++ + + K P + ++ D ++ ++ +GTG+FG V + +T
Sbjct: 9 KGXEQESVKEFLAKAKEDFLKKWENPA--QNTAHLDQFERIKTLGTGSFGRVMLVKHMET 66
Query: 845 GNIFAAKFIPVSHNLEKELIRKEID---IMNQLHHPKLINLHDAFEDDDEMVLIFE 897
GN +A K + ++ + I ++ I+ ++ P L L +F+D+ + ++ E
Sbjct: 67 GNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLTKLEFSFKDNSNLYMVME 122
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 67 LTALKYAFQTHDRLCFVME 85
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 67 LTALKYAFQTHDRLCFVME 85
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---------PVSHNLEKELIRKEIDIMN 872
Y+ + EIG GA+G V++ R+ +G+ A K + P+S E L+R+ +
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR----LE 61
Query: 873 QLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
HP ++ L D + + ++ L+FE +D+
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ 95
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFR-- 147
P + P DL V G L+C A+ T + W+ NG ++ GA Y+V A V
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGA-YKVRIA--VLSDG 397
Query: 148 -LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
L+F VT D G YTC NSVG S+ + +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFR-- 1754
P + P DL V G L+C A+ T + W+ NG ++ GA Y+V A V
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGA-YKVRIA--VLSDG 397
Query: 1755 -LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
L+F VT D G YTC NSVG S+ + +
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 12 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 71
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 72 LTALKYAFQTHDRLCFVME 90
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---------PVSHNLEKELIRKEIDIMN 872
Y+ + EIG GA+G V++ R+ +G+ A K + P+S E L+R+ +
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR----LE 61
Query: 873 QLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
HP ++ L D + + ++ L+FE +D+
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ 95
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPK 878
+D L+ +G G FG V RE+ TG +A K + + K+ + E ++ HP
Sbjct: 7 FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
L L AF+ D + + E
Sbjct: 67 LTALKYAFQTHDRLCFVME 85
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 18/94 (19%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---------PVSHNLEKELIRKEIDIMN 872
Y+ + EIG GA+G V++ R+ +G+ A K + P+S E L+R+ +
Sbjct: 6 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRR----LE 61
Query: 873 QLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
HP ++ L D + + ++ L+FE +D+
Sbjct: 62 AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ 95
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 796 DQYVFDIYSKYVPQPVDIKTSSVY-DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI- 853
D+YV + P +K ++ + ++I++ IG GAFG V + + T I+A K +
Sbjct: 65 DKYVAEFLEWAKPFTQLVKEMQLHREDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILN 124
Query: 854 --PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ E R+E D++ + LH AF+D++ + L+ +
Sbjct: 125 KWEMLKRAETACFREERDVLVNGDCQWITALHYAFQDENHLYLVMD 170
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 823 DILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR---KEIDIMNQLHHPKL 879
+I E+IG G+FG VHR G+ A K + + + E + +E+ IM +L HP +
Sbjct: 40 NIKEKIGAGSFGTVHRAEWH--GSDVAVKIL-MEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 880 INLHDAFEDDDEMVLIFEVLDR 901
+ A + ++ E L R
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSR 118
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 796 DQYVFDIYSKYVPQPVDIKTSSVY-DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI- 853
D+YV + P +K ++ + ++I++ IG GAFG V + + T I+A K +
Sbjct: 49 DKYVAEFLEWAKPFTQLVKEMQLHREDFEIIKVIGRGAFGEVAVVKMKNTERIYAMKILN 108
Query: 854 --PVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ E R+E D++ + LH AF+D++ + L+ +
Sbjct: 109 KWEMLKRAETACFREERDVLVNGDCQWITALHYAFQDENHLYLVMD 154
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 823 DILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR---KEIDIMNQLHHPKL 879
+I E+IG G+FG VHR G+ A K + + + E + +E+ IM +L HP +
Sbjct: 40 NIKEKIGAGSFGTVHRAEWH--GSDVAVKIL-MEQDFHAERVNEFLREVAIMKRLRHPNI 96
Query: 880 INLHDAFEDDDEMVLIFEVLDR 901
+ A + ++ E L R
Sbjct: 97 VLFMGAVTQPPNLSIVTEYLSR 118
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 21/103 (20%)
Query: 816 SSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAK------------FIPVSHNLEKEL 863
S Y+ + EIG GA+G V++ R+ +G+ A K +P+S E L
Sbjct: 5 SMATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVAL 64
Query: 864 IRKEIDIMNQLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
+R+ + HP ++ L D + + ++ L+FE +D+
Sbjct: 65 LRR----LEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ 103
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 820 DHYDILEEIGTGAFGVVHRCRE---RKTGNIFAAKFIPVSHNLEK----ELIRKEIDIMN 872
+++++L+ +GTGA+G V R+ TG ++A K + + ++K E R E ++
Sbjct: 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE 113
Query: 873 QLHH-PKLINLHDAFEDDDEMVLIFEVLD 900
+ P L+ LH AF+ + ++ LI + ++
Sbjct: 114 HIRQSPFLVTLHYAFQTETKLHLILDYIN 142
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 99
Query: 875 HHPKLI 880
H ++
Sbjct: 100 QHDNIV 105
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 18 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 75
Query: 875 HHPKLI 880
H ++
Sbjct: 76 QHDNIV 81
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 14 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 71
Query: 875 HHPKLI 880
H ++
Sbjct: 72 QHDNIV 77
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 68
Query: 875 HHPKLI 880
H ++
Sbjct: 69 QHDNIV 74
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL----EKELIRKEIDIMNQLHHP 877
+ L+ IG G+FG V R + +A K + L EK ++ + ++ + HP
Sbjct: 40 FHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHP 99
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
L+ LH +F+ D++ + + ++
Sbjct: 100 FLVGLHFSFQTADKLYFVLDYIN 122
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 37.7 bits (86), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 16 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 73
Query: 875 HHPKLI 880
H ++
Sbjct: 74 QHDNIV 79
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 37.7 bits (86), Expect = 0.064, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 821 HYDILEEIGTGAFG---VVHRCRERKTGNIFAAKFIPVSHNLEKELIRK--EIDIMNQLH 875
+++L+ +G G+FG +V + ++A K + + ++ +R E DI+ +++
Sbjct: 26 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 85
Query: 876 HPKLINLHDAFEDDDEMVLIFEVL 899
HP ++ LH AF+ + ++ LI + L
Sbjct: 86 HPFIVKLHYAFQTEGKLYLILDFL 109
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 37.7 bits (86), Expect = 0.064, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 821 HYDILEEIGTGAFG---VVHRCRERKTGNIFAAKFIPVSHNLEKELIRK--EIDIMNQLH 875
+++L+ +G G+FG +V + ++A K + + ++ +R E DI+ +++
Sbjct: 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 84
Query: 876 HPKLINLHDAFEDDDEMVLIFEVL 899
HP ++ LH AF+ + ++ LI + L
Sbjct: 85 HPFIVKLHYAFQTEGKLYLILDFL 108
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
++EIG+G FG+VH + A K I E++ I +E ++M +L HPKL+ L+
Sbjct: 12 FVQEIGSGQFGLVHLGYWLNKDKV-AIKTIREGAMSEEDFI-EEAEVMMKLSHPKLVQLY 69
Query: 884 DAFEDDDEMVLIFEVLDRPHPPENLHADE--FAGDSL 918
+ + L+ E ++ + L FA ++L
Sbjct: 70 GVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETL 106
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 17 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 74
Query: 875 HHPKLI 880
H ++
Sbjct: 75 QHDNIV 80
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 37.7 bits (86), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 68
Query: 875 HHPKLI 880
H ++
Sbjct: 69 QHDNIV 74
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 12 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 69
Query: 875 HHPKLI 880
H ++
Sbjct: 70 QHDNIV 75
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 14 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 71
Query: 875 HHPKLI 880
H ++
Sbjct: 72 QHDNIV 77
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 15 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 72
Query: 875 HHPKLI 880
H ++
Sbjct: 73 QHDNIV 78
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH----NLEKELIRKEIDIMNQLHH 876
+Y + + IG G F V R TG A K I + +L+K + +E+ IM L+H
Sbjct: 16 NYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQK--LFREVRIMKILNH 73
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 74 PNIVKLFEVIETEKTLYLVME 94
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 9 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 66
Query: 875 HHPKLI 880
H ++
Sbjct: 67 QHDNIV 72
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 10 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 67
Query: 875 HHPKLI 880
H ++
Sbjct: 68 QHDNIV 73
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 29 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 86
Query: 875 HHPKLI 880
H ++
Sbjct: 87 QHDNIV 92
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 68
Query: 875 HHPKLI 880
H ++
Sbjct: 69 QHDNIV 74
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1238 LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLET 1297
L+VSD T + SL W+ P+ + Y + Y S +G +++ V S ++ + GL+
Sbjct: 13 LEVSDPTETTLSLRWRRPV----AKFDRYRL-TYVSPSGKKNEMEIPVDSTSFILRGLDA 67
Query: 1298 NRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRT 1357
+Y + AE S+P + S TV P D N+AT+ W PR
Sbjct: 68 GTEYTISLVAEKGRHKSKPTTIKGS-------TVVGSPKGISFSDITENSATVSWTPPR- 119
Query: 1358 DGGSKIQGYKMLLKTPTGELPTTI 1381
S++ Y++ TG P +
Sbjct: 120 ---SRVDSYRVSYVPITGGTPNVV 140
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L+++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 29 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 86
Query: 875 HHPKLI 880
H ++
Sbjct: 87 QHDNIV 92
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.7 bits (86), Expect = 0.078, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 98 KDLVVPLGKLLTLQCEATGTPVPKCRWL-RNGREISSGARYRVETAGGVFRLHFNEVTDV 156
+DL + G++ L+C P+ +WL NG +S +R+ + L+F+ V
Sbjct: 360 RDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 157 DNGDYTCEAYNSVGFAHTSSRVKIGT 182
D G YTC N G ++ S+ + + T
Sbjct: 418 DTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 37.7 bits (86), Expect = 0.078, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 1705 KDLVVPLGKLLTLQCEATGTPVPKCRWL-RNGREISSGARYRVETAGGVFRLHFNEVTDV 1763
+DL + G++ L+C P+ +WL NG +S +R+ + L+F+ V
Sbjct: 360 RDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 1764 DNGDYTCEAYNSVGFAHTSSRVKIGT 1789
D G YTC N G ++ S+ + + T
Sbjct: 418 DTGVYTCMVTNVAGNSNASAYLNVST 443
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 37.7 bits (86), Expect = 0.079, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 821 HYDILEEIGTGAFG---VVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEI--DIMNQLH 875
+++L+ +G G+FG +V + ++A K + + ++ +R ++ DI+ +++
Sbjct: 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 84
Query: 876 HPKLINLHDAFEDDDEMVLIFEVL 899
HP ++ LH AF+ + ++ LI + L
Sbjct: 85 HPFIVKLHYAFQTEGKLYLILDFL 108
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV----SHNLEKELIRKEIDIMNQLHH 876
+Y +L+ IG G F V R TG A K I S +L+K + +E+ I L+H
Sbjct: 15 NYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQK--LFREVRIXKVLNH 72
Query: 877 PKLINLHDAFEDDDEMVLIFE 897
P ++ L + E + + L+ E
Sbjct: 73 PNIVKLFEVIETEKTLYLVXE 93
>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
pdb|4EUU|B Chain B, Structure Of Bx-795 Complexed With Human Tbk1 Kinase
Domain Phosphorylated On Ser172
Length = 319
Score = 37.4 bits (85), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 813 IKTSSVYDHYDILEEI-GTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRKEIDI 870
+ + S +H +L +I G GA V R R +KTG++FA K F +S ++ +E ++
Sbjct: 1 MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEV 60
Query: 871 MNQLHHPKLINLHDAFEDDD---EMVLIFE---------VLDRPHPPENLHADEF 913
+ +L+H ++ L A E++ VLI E VL+ P L EF
Sbjct: 61 LKKLNHKNIVKLF-AIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEF 114
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 37.4 bits (85), Expect = 0.091, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWL-RNGREISSGARYRVETAGGV 145
G P + +DL + G++ L+C P+ +WL NG +S +R+ +
Sbjct: 4 GSSGPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND 61
Query: 146 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
L+F+ V D G YTC N G ++ S+ + + + P
Sbjct: 62 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
Score = 37.4 bits (85), Expect = 0.091, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 1694 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWL-RNGREISSGARYRVETAGGV 1752
G P + +DL + G++ L+C P+ +WL NG +S +R+ +
Sbjct: 4 GSSGPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND 61
Query: 1753 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
L+F+ V D G YTC N G ++ S+ + + + P
Sbjct: 62 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 285 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 337
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 111 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 169
Query: 338 VQGLTEGQEYLFHVMAVNENGMGPPLEGI 366
+Q LT Y F + A N GMGP E +
Sbjct: 170 IQELTLDTPYYFKIQARNSKGMGPMSEAV 198
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 1892 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 1944
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 111 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 169
Query: 1945 VQGLTEGQEYLFHVMAVNENGMGPPLEGI 1973
+Q LT Y F + A N GMGP E +
Sbjct: 170 IQELTLDTPYYFKIQARNSKGMGPMSEAV 198
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Query: 925 PRDNGGSEITNYVVEKKDYNSTVWTK----VSSYVTTPFVRVRNLAIGSTYEFRVMAENQ 980
P GG I Y E + VW V + L +TY R+ A N
Sbjct: 31 PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNG 90
Query: 981 YGLSKPALTIDPIKAKHPFDVPGAPG--APKGVDSTEDSISLVWSKPRHDGGSPIQRYIV 1038
GL + ++ P P AP +G D ++L+ + DGGSPI+ Y+V
Sbjct: 91 KGLGE--ISAASEFKTQPVREPSAPKLEGQRGEDGNSIKVNLI---KQDDGGSPIRHYLV 145
Query: 1039 EKRLISDD 1046
R +S +
Sbjct: 146 RYRALSSE 153
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 985
+D+GGS I +Y+V + +S ++ + V +++L + YE V+AENQ G SK
Sbjct: 133 QDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSK 192
Query: 986 PA 987
A
Sbjct: 193 AA 194
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 1257 DDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYD----VFGLETNRQYRFRVRAENQYG 1312
DDGGSPI +Y+V +Y + + W +R P+ + L+ N +Y V AENQ G
Sbjct: 134 DDGGSPIRHYLV-RYRALSSEW---KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189
Query: 1313 VSE 1315
S+
Sbjct: 190 KSK 192
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 286 VSEITKHTCTLHWNPPKYDGGLKVTHYVVE--RRDISMPHWICISTTCHDTTFIVQGLTE 343
+S +T L W+PPK G ++ Y ++ R D + P+ I D F V GL +
Sbjct: 15 ISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKD--DQHFTVTGLHK 71
Query: 344 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 380
G Y+F + A N G+G E + ++P D P
Sbjct: 72 GTTYIFRLAAKNRAGLGEEFEK----EIRTPEDLSGP 104
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 1893 VSEITKHTCTLHWNPPKYDGGLKVTHYVVE--RRDISMPHWICISTTCHDTTFIVQGLTE 1950
+S +T L W+PPK G ++ Y ++ R D + P+ I D F V GL +
Sbjct: 15 ISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKD--DQHFTVTGLHK 71
Query: 1951 GQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSP 1987
G Y+F + A N G+G E + ++P D P
Sbjct: 72 GTTYIFRLAAKNRAGLGEEFEK----EIRTPEDLSGP 104
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 497 NAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 555
+ ++ C I + T ++W G R++ S ++ I E L + + +D Y C+
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKV 77
Query: 556 VNKGGVKSTKAELII 570
VN G S+ AEL +
Sbjct: 78 VNDYGEDSSYAELFV 92
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 2104 NAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA 2162
+ ++ C I + T ++W G R++ S ++ I E L + + +D Y C+
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKV 77
Query: 2163 VNKGGVKSTKAELII 2177
VN G S+ AEL +
Sbjct: 78 VNDYGEDSSYAELFV 92
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 607 KITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKI 664
++TWY +E+ + + + AIL ++D + +D YR ND G DS+ ++
Sbjct: 33 QVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 124 WLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG 170
W R++ + +Y + GV L+ ++T +D+G Y C+ N G
Sbjct: 36 WYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG 82
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 1731 WLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG 1777
W R++ + +Y + GV L+ ++T +D+G Y C+ N G
Sbjct: 36 WYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG 82
>pdb|1X44|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Myosin-
Dinding Protein C, Slow-Type
Length = 103
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVY 544
L + A + +C ++ + W K EI P +R+ I EG + LII
Sbjct: 14 LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 545 GVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
DA EY + GG S K + + + P
Sbjct: 73 KADAAEY--SVMTTGGQSSAKLSVDLKSGP 100
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVY 2151
L + A + +C ++ + W K EI P +R+ I EG + LII
Sbjct: 14 LEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 2152 GVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
DA EY + GG S K + + + P
Sbjct: 73 KADAAEY--SVMTTGGQSSAKLSVDLKSGP 100
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 97 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVT 154
L+D G+ + L+CE + +W +NG EI G +RYR+ G L T
Sbjct: 14 LEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 155 DVDNGDYTCEAYNSVGFAHTSSRVKIG 181
D +Y+ A S +K G
Sbjct: 73 KADAAEYSVMTTGGQSSAKLSVDLKSG 99
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 1704 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVT 1761
L+D G+ + L+CE + +W +NG EI G +RYR+ G L T
Sbjct: 14 LEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 72
Query: 1762 DVDNGDYTCEAYNSVGFAHTSSRVKIG 1788
D +Y+ A S +K G
Sbjct: 73 KADAAEYSVMTTGGQSSAKLSVDLKSG 99
>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147
pdb|3NIE|B Chain B, Crystal Structure Of Pf11_0147
Length = 429
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL----IRKEI 868
IK V D+Y+I IG G++G V+ ++ A K V+ E + I +EI
Sbjct: 21 IKNVKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIK--KVNRMFEDLIDCKRILREI 78
Query: 869 DIMNQLHHPKLINLHDAF--EDD---DEMVLIFEVLD 900
I+N+L +I LHD ED DE+ ++ E+ D
Sbjct: 79 TILNRLKSDYIIRLHDLIIPEDLLKFDELYIVLEIAD 115
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
LRN A + A +C ++ + W KG + RH + +G L I +
Sbjct: 26 LRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAE 83
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
DA EY+C G + T A L + P
Sbjct: 84 DAGEYLCMC----GKERTSAMLTVRAMP 107
Score = 37.0 bits (84), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
LRN A + A +C ++ + W KG + RH + +G L I +
Sbjct: 26 LRNEEATEGATAVLRCELS--KMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAE 83
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
DA EY+C G + T A L + P
Sbjct: 84 DAGEYLCMC----GKERTSAMLTVRAMP 107
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 821 HYDILEEIGTGAFGVVHRCR----ERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQL 874
H L ++G G FG V CR + TG + A K + H+ E+ L +EI+I+ L
Sbjct: 14 HLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSL 71
Query: 875 HHPKLI 880
H ++
Sbjct: 72 QHDNIV 77
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 285 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 337
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 24 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 82
Query: 338 VQGLTEGQEYLFHVMAVNENGMGPPLEGIN 367
+Q LT Y F + A N GMGP E +
Sbjct: 83 IQELTLDTPYYFKIQARNSKGMGPMSEAVQ 112
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 1892 DVSEITKH----TCTLHWNPPKYDGGLKVTHYVVERR---DISMPHWICISTTCHDTTFI 1944
DV+ ++K T ++W PP G K+T Y++ + + W+ + T
Sbjct: 24 DVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQ 82
Query: 1945 VQGLTEGQEYLFHVMAVNENGMGPPLEGIN 1974
+Q LT Y F + A N GMGP E +
Sbjct: 83 IQELTLDTPYYFKIQARNSKGMGPMSEAVQ 112
>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv976
Length = 323
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A K I + + L + EI
Sbjct: 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 66
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 67 EILKKLNHPCIIKIKNFFDAEDYYIVL 93
>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1531
Length = 322
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A K I + + L + EI
Sbjct: 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 66
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 67 EILKKLNHPCIIKIKNFFDAEDYYIVL 93
>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In
Complex With Inhibitor Pv1533
Length = 322
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A K I + + L + EI
Sbjct: 6 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 65
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 66 EILKKLNHPCIIKIKNFFDAEDYYIVL 92
>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A
Specific Inhibitor
pdb|2W7X|A Chain A, Cellular Inhibition Of Checkpoint Kinase 2 And
Potentiation Of Cytotoxic Drugs By Novel Chk2 Inhibitor
Pv1019
pdb|2YIQ|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1322
pdb|2YIR|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1352
pdb|2YIT|A Chain A, Structural Analysis Of Checkpoint Kinase 2 In Complex With
Pv1162, A Novel Inhibitor
pdb|2YCQ|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Inhibitor Pv1115
pdb|2YCS|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With
Pv788
Length = 323
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A K I + + L + EI
Sbjct: 7 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 66
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 67 EILKKLNHPCIIKIKNFFDAEDYYIVL 93
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 102 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 161
V G+ + L C ATG P + +W + +EI + G L FN V D G Y
Sbjct: 30 VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFY 80
Query: 162 TCEAYNSVGF 171
C N+ F
Sbjct: 81 VCRVNNNFTF 90
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 1709 VPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 1768
V G+ + L C ATG P + +W + +EI + G L FN V D G Y
Sbjct: 30 VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN---------GNTSELIFNAVHVKDAGFY 80
Query: 1769 TCEAYNSVGF 1778
C N+ F
Sbjct: 81 VCRVNNNFTF 90
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 535
+ + +I V + + + C TG P W K ++EI G+T
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI---------PNGNT 64
Query: 536 YTLIINSVYGVDADEYVCRAVN 557
LI N+V+ DA YVCR N
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNN 86
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 2083 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDT 2142
+ + +I V + + + C TG P W K ++EI G+T
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI---------PNGNT 64
Query: 2143 YTLIINSVYGVDADEYVCRAVN 2164
LI N+V+ DA YVCR N
Sbjct: 65 SELIFNAVHVKDAGFYVCRVNN 86
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 49 VLNLVEGNDYEFRIIAVNAIGKSEPS------ICTTPVKICEFVGG---EKPDFIV-PLK 98
+ N V D F + VN E S +C P V G K V P
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDN 158
++P G L LQC A G+P+P +W +N ++ + +L+ D+++
Sbjct: 128 QKLMP-GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------KLYMVPYVDLEH 176
Query: 159 -GDYTCEAYN 167
G Y C YN
Sbjct: 177 QGTYWCHVYN 186
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 1656 VLNLVEGNDYEFRIIAVNAIGKSEPS------ICTTPVKICEFVGG---EKPDFIV-PLK 1705
+ N V D F + VN E S +C P V G K V P
Sbjct: 68 IFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTS 127
Query: 1706 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDN 1765
++P G L LQC A G+P+P +W +N ++ + +L+ D+++
Sbjct: 128 QKLMP-GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------KLYMVPYVDLEH 176
Query: 1766 -GDYTCEAYN 1774
G Y C YN
Sbjct: 177 QGTYWCHVYN 186
>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp
pdb|2CN8|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Debromohymenialdisine
pdb|2WTC|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTD|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTI|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2WTJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XBJ|A Chain A, Crystal Structure Of Chk2 In Complex With An Inhibitor
pdb|2XM8|A Chain A, Co-Crystal Structure Of A Small Molecule Inhibitor Bound
To The Kinase Domain Of Chk2
pdb|2XM9|A Chain A, Structure Of A Small Molecule Inhibitor With The Kinase
Domain Of Chk2
pdb|4A9R|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9S|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9T|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
pdb|4A9U|A Chain A, Crystal Structure Of Human Chk2 In Complex With
Benzimidazole Carboxamide Inhibitor
Length = 329
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A K I + + L + EI
Sbjct: 13 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEI 72
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 73 EILKKLNHPCIIKIKNFFDAEDYYIVL 99
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQL-HHPKLIN 881
LE+IG+G FG V +C +R G I+A K P++ +++++ +E+ L H ++
Sbjct: 16 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVR 75
Query: 882 LHDAFEDDDEMVL 894
A+ +DD M++
Sbjct: 76 YFSAWAEDDHMLI 88
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 482 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 541
+ I LRN A + A C ++ + W KG + RH + +G L I
Sbjct: 10 KFIEGLRNEEATEGDTATLWCELS--KAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIR 67
Query: 542 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
+ VDA EY C G + T A L + P
Sbjct: 68 GLAVVDAGEYSCVC----GQERTSATLTVRALP 96
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 2089 EIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIIN 2148
+ I LRN A + A C ++ + W KG + RH + +G L I
Sbjct: 10 KFIEGLRNEEATEGDTATLWCELS--KAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIR 67
Query: 2149 SVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
+ VDA EY C G + T A L + P
Sbjct: 68 GLAVVDAGEYSCVC----GQERTSATLTVRALP 96
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDI-MNQLHHP 877
D + + E+G GA+GVV + R +G I A K I + N E++ + ++DI M + P
Sbjct: 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 110
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
+ + A + ++ + E++D
Sbjct: 111 FTVTFYGALFREGDVWICMELMD 133
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQL-HHPKLIN 881
LE+IG+G FG V +C +R G I+A K P++ +++++ +E+ L H ++
Sbjct: 14 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVR 73
Query: 882 LHDAFEDDDEMVL 894
A+ +DD M++
Sbjct: 74 YFSAWAEDDHMLI 86
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 80 VKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC-EATGTPVPKCRWLRNG---------- 128
VK+ V KP +P + G L C E G+P + W ++G
Sbjct: 100 VKLIVLVPPSKPTVNIPSSATI---GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156
Query: 129 REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180
R S+ + T G L F+ ++ D G+Y+CEA N G TS+ V++
Sbjct: 157 RAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 1687 VKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQC-EATGTPVPKCRWLRNG---------- 1735
VK+ V KP +P + G L C E G+P + W ++G
Sbjct: 100 VKLIVLVPPSKPTVNIPSSATI---GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156
Query: 1736 REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 1787
R S+ + T G L F+ ++ D G+Y+CEA N G TS+ V++
Sbjct: 157 RAFSNSSYVLNPTTG---ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 813 IKTSSVYDHYDILEEI-GTGAFGVVHRCRERKTGNIFAAK-FIPVSHNLEKELIRKEIDI 870
+ + S +H +L +I G GA V R R +KTG++FA K F +S ++ +E ++
Sbjct: 1 MGSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEV 60
Query: 871 MNQLHHPKLINLHDAFEDDD---EMVLIFE---------VLDRPHPPENLHADEF 913
+ +L+H ++ L A E++ VLI E VL+ P L EF
Sbjct: 61 LKKLNHKNIVKLF-AIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEF 114
>pdb|1WIS|A Chain A, Solution Structure Of The Fifth Fniii Domain From Human
Kiaa1514 Protein
Length = 124
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 668 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSS---WIRVGNTR- 723
+ P PP + +IG S+ L +R P +DG ++I+ ++VE + + W+ +
Sbjct: 16 ELPGPPTNLGISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSN 74
Query: 724 ---FTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 762
+M + L+P Y FR+ N+ G S PS S I T
Sbjct: 75 EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR--- 147
P L++ +G+ + + C A+G P P+ W ++ + VE +G V +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-------VEDSGIVLKDGN 63
Query: 148 --LHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176
L V D G YTC+A + +G A +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 94
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFR--- 1754
P L++ +G+ + + C A+G P P+ W ++ + VE +G V +
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-------VEDSGIVLKDGN 63
Query: 1755 --LHFNEVTDVDNGDYTCEAYNSVGFAHTSS 1783
L V D G YTC+A + +G A +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEA 94
Score = 35.8 bits (81), Expect = 0.27, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 591 GENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVV 650
GE++ V +G P P+I W++DNE + ++ R+ LTIR D Y
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYTCQ 82
Query: 651 AENDLG 656
A + LG
Sbjct: 83 ACSVLG 88
Score = 35.8 bits (81), Expect = 0.31, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 1134 APKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPD-GRIKFETSENQT 1192
AP IT +L + T GE ++ SG P P +W + + + D G + + + N T
Sbjct: 10 APTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT 67
Query: 1193 IYRNKSAKRATDSGSYTIQLVNTVG 1217
I R R D G YT Q + +G
Sbjct: 68 IRR----VRKEDEGLYTCQACSVLG 88
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 539
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 540 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 573
I V D Y C+A + G +A II A
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLI 2146
AP I L N + + CT +G P P I W K + + + I + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLT 67
Query: 2147 INSVYGVDADEYVCRAVNKGGVKSTKAELIIMTA 2180
I V D Y C+A + G +A II A
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQL-HHPKLIN 881
LE+IG+G FG V +C +R G I+A K P++ +++++ +E+ L H ++
Sbjct: 14 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVR 73
Query: 882 LHDAFEDDDEMVL 894
A+ +DD M++
Sbjct: 74 YFSAWAEDDHMLI 86
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQL-HHPKLIN 881
LE+IG+G FG V +C +R G I+A K P++ +++++ +E+ L H ++
Sbjct: 12 LEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVR 71
Query: 882 LHDAFEDDDEMVL 894
A+ +DD M++
Sbjct: 72 YFSAWAEDDHMLI 84
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 902 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVR 961
P P N A+ + S+ L WTPPR + I NY + KD +++ T + R
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRITIEPGTSY-R 73
Query: 962 VRNLAIGSTYEFRVMAENQYGL 983
++ L S Y FR+ A + GL
Sbjct: 74 LQGLKPNSLYYFRLAARSPQGL 95
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 1217 GSDSASCKVYVVDKPSPPQGPLDVSDITPESCS---LSWKPPLDDGGSPITNYVVEKYES 1273
GS +S + V+ + P PL+ PES + LSW PP D I NY + +
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPLNF-KAEPESETSILLSWTPPRSD---TIANYELVYKDG 56
Query: 1274 ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGV 1313
G +++ +Y + GL+ N Y FR+ A + G+
Sbjct: 57 EHGEEQRIT-IEPGTSYRLQGLKPNSLYYFRLAARSPQGL 95
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 820 DHYDILEEI-GTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPK 878
D Y + E+ G GA+ V + G +A K I + + +E++ + Q K
Sbjct: 12 DMYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQGNK 71
Query: 879 -LINLHDAFEDDDEMVLIFEVL 899
++ L + FEDD L+FE L
Sbjct: 72 NILELIEFFEDDTRFYLVFEKL 93
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE---KELIRKEIDIM 871
+++ D Y + ++G G +G V++ + T A K I + H E IR E+ ++
Sbjct: 29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIR-EVSLL 87
Query: 872 NQLHHPKLINLHDAFEDDDEMVLIFE 897
+L H +I L + + LIFE
Sbjct: 88 KELQHRNIIELKSVIHHNHRLHLIFE 113
>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
pdb|3N9X|B Chain B, Crystal Structure Of Map Kinase From Plasmodium Berghei,
Pb000659.00.0
Length = 432
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN--LEKELIRKEIDI 870
IK V D+Y I IG G++G V+ ++ T A K + ++ + I +EI I
Sbjct: 19 IKNVHVPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITI 78
Query: 871 MNQLHHPKLINLHDAFEDD-----DEMVLIFEVLD 900
+N+L +I L+D D DE+ ++ E+ D
Sbjct: 79 LNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD 113
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 500 FQCTITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 558
F CT G P+ +I W E I + R + EG L I + DA Y C+A +
Sbjct: 22 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80
Query: 559 GGVKSTKAELIIMTAPKFNVPPRFRDTAY---FDKGENVVVKIPFTGYPKPKITWYRDNE 615
G ++ +A +++ K FR+ F +GE+ V + P P ++W NE
Sbjct: 81 KG-QTQEATVVLEIYQKLT----FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 135
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQLHHPKLINLH--- 883
+G GA+GVV + TG I A K I P L +EI I+ H +I +
Sbjct: 19 LGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78
Query: 884 --DAFEDDDEMVLIFEVL 899
D+FE+ +E+ +I E++
Sbjct: 79 RPDSFENFNEVYIIQELM 96
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 28 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 85
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 286 VSEITKHTCTLHWNPPKYD-GGLKVTHYVV----ERRDISMPHWICISTTCHDTTFIVQG 340
V+ +T + T+ W PP G ++T+ E +++++P T+ + G
Sbjct: 10 VTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPP--------SSTSVTITG 61
Query: 341 LTEGQEYLFHVMAVNENGMGPPL 363
LT G EY+ V A+ +N PPL
Sbjct: 62 LTPGVEYVVSVYALKDNQESPPL 84
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 1893 VSEITKHTCTLHWNPPKYD-GGLKVTHYVV----ERRDISMPHWICISTTCHDTTFIVQG 1947
V+ +T + T+ W PP G ++T+ E +++++P T+ + G
Sbjct: 10 VTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPP--------SSTSVTITG 61
Query: 1948 LTEGQEYLFHVMAVNENGMGPPL 1970
LT G EY+ V A+ +N PPL
Sbjct: 62 LTPGVEYVVSVYALKDNQESPPL 84
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQL----- 874
D+++ + +G G+FG V R ++TG+++A K L+K++I ++ D+ +
Sbjct: 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKV------LKKDVILQDDDVECTMTEKRI 76
Query: 875 -----HHPKLINLHDAFEDDDEMVLIFEVLD 900
+HP L L F+ D + + E ++
Sbjct: 77 LSLARNHPFLTQLFCCFQTPDRLFFVMEFVN 107
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 28 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 85
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFA-AKFIPVSHNL-EKELIRKEIDIMNQLHHP 877
D Y+I IGTG++G V ++ + A K + V +L + + I +EI I+N+L+H
Sbjct: 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHD 112
Query: 878 KLINLHDA-----FEDDDEMVLIFEVLD 900
++ + D E DE+ ++ E+ D
Sbjct: 113 HVVKVLDIVIPKDVEKFDELYVVLEIAD 140
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 66 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 121
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 122 SSGEKKDEVYLNL-VLD--YVPETVY 144
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQLHHPKLINLH--- 883
+G GA+GVV + TG I A K I P L +EI I+ H +I +
Sbjct: 19 LGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78
Query: 884 --DAFEDDDEMVLIFEVL 899
D+FE+ +E+ +I E++
Sbjct: 79 RPDSFENFNEVYIIQELM 96
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHF----HVET-SERHAILTIRDASNVDTAPYRVV 650
IPFT G PKP + W+ + ++ + HV +E H L + + ++++ Y ++
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 651 AENDLGMD 658
A+N+ G D
Sbjct: 81 AKNEYGKD 88
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 1444 VPFM--AFPQPAAFWFANDSIIDDSD---TRVH-KQLTMNSASLVVKNSQRSDGGQYRLQ 1497
+PF P+PA WF N +I+++S T++H T L + N + G Y L
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 1498 LKNPAGFDTATLHSRLRTLP 1517
KN G D + + P
Sbjct: 81 AKNEYGKDEKQISAHFMGWP 100
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 19 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 76
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 117
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 118 SSGEKKDEVYLNL-VLD--YVPETVY 140
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHF----HVET-SERHAILTIRDASNVDTAPYRVV 650
IPFT G PKP + W+ + ++ + HV +E H L + + ++++ Y ++
Sbjct: 21 IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80
Query: 651 AENDLGMD 658
A+N+ G D
Sbjct: 81 AKNEYGKD 88
Score = 32.0 bits (71), Expect = 4.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 1450 PQPAAFWFANDSIIDDSD---TRVH-KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1505
P+PA WF N +I+++S T++H T L + N + G Y L KN G D
Sbjct: 29 PKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD 88
Query: 1506 TATLHSRLRTLP 1517
+ + P
Sbjct: 89 EKQISAHFMGWP 100
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 56 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 111
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 112 SSGEKKDEVYLNL-VLD--YVPETVY 134
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 64 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 119
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 120 SSGEKKDEVYLNL-VLD--YVPETVY 142
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFI-PVSHNLEKELIRKEIDIMNQLHHPKLINLH--- 883
+G GA+GVV + TG I A K I P L +EI I+ H +I +
Sbjct: 19 LGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQ 78
Query: 884 --DAFEDDDEMVLIFEVL 899
D+FE+ +E+ +I E++
Sbjct: 79 RPDSFENFNEVYIIQELM 96
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 107 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 162
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 163 SSGEKKDEVYLNL-VLD--YVPETVY 185
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 12 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 69
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 13 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 70
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 13 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 70
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP-- 877
Y+I++ +G GAFG V C + K G A + + N+++ E R EI ++ L+
Sbjct: 16 YEIVDTLGEGAFGKVVECIDHKAGGRHVA--VKIVKNVDRYCEAARSEIQVLEHLNTTDP 73
Query: 878 ----KLINLHDAFEDDDEMVLIFEVL 899
+ + + + FE + ++FE+L
Sbjct: 74 NSTFRCVQMLEWFEHHGHICIVFELL 99
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 117
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 118 SSGEKKDEVYLNL-VLD--YVPETVY 140
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
Query: 925 PRDNGGSEITNYVVEKKDYNSTVWTK----VSSYVTTPFVRVRNLAIGSTYEFRVMAENQ 980
P GG I Y E + VW V + L +TY R+ A N
Sbjct: 31 PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNG 90
Query: 981 YGLSKPALTIDPIKAKHPFDVPGAPG--APKGVDSTEDSISLVWSKPRHDGGSPIQRYIV 1038
GL + ++ P P AP G D ++L+ + DGGSPI+ Y+V
Sbjct: 91 KGLGE--ISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI---KQDDGGSPIRHYLV 145
Query: 1039 EKRLISDD 1046
R +S +
Sbjct: 146 RYRALSSE 153
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 985
+D+GGS I +Y+V + +S ++ + V +++L + YE V+AENQ G SK
Sbjct: 133 QDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSK 192
Query: 986 PA 987
A
Sbjct: 193 AA 194
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 1257 DDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYD----VFGLETNRQYRFRVRAENQYG 1312
DDGGSPI +Y+V +Y + + W +R P+ + L+ N +Y V AENQ G
Sbjct: 134 DDGGSPIRHYLV-RYRALSSEW---KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 189
Query: 1313 VSE 1315
S+
Sbjct: 190 KSK 192
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHP-- 877
Y+I++ +G GAFG V C + K G A + + N+++ E R EI ++ L+
Sbjct: 16 YEIVDTLGEGAFGKVVECIDHKAGGRHVA--VKIVKNVDRYCEAARSEIQVLEHLNTTDP 73
Query: 878 ----KLINLHDAFEDDDEMVLIFEVL 899
+ + + + FE + ++FE+L
Sbjct: 74 NSTFRCVQMLEWFEHHGHICIVFELL 99
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 33 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 88
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 89 SSGEKKDEVYLNL-VLD--YVPETVY 111
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 648
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 649 VVAENDLGMDSAIVKIQISDRP 670
++A N G SA + D P
Sbjct: 326 LLAANPFGQASASIMAAFMDNP 347
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 116 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 168
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 169 VGFAHTS 175
G A S
Sbjct: 332 FGQASAS 338
Score = 35.4 bits (80), Expect = 0.32, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1723 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 1775
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 1776 VGFAHTS 1782
G A S
Sbjct: 332 FGQASAS 338
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1158 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 1209
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325
Query: 1210 IQLVNTVGSDSASCKVYVVDKP 1231
+ N G SAS +D P
Sbjct: 326 LLAANPFGQASASIMAAFMDNP 347
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAA----------KFIPVSHNLEKELIRKEIDI 870
Y+ + EIG GA+G V + R+ K G F A + +P+S E ++R
Sbjct: 12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH---- 67
Query: 871 MNQLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
+ HP ++ L D + + ++ L+FE +D+
Sbjct: 68 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ 103
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAA----------KFIPVSHNLEKELIRKEIDI 870
Y+ + EIG GA+G V + R+ K G F A + +P+S E ++R
Sbjct: 12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH---- 67
Query: 871 MNQLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
+ HP ++ L D + + ++ L+FE +D+
Sbjct: 68 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ 103
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL--IRKEIDIMNQLHHPK 878
+Y++ E IGTG F V TG + A K + + L +L I+ EI+ + L H
Sbjct: 11 YYELHETIGTGGFAKVKLACHILTGEMVAIKIMD-KNTLGSDLPRIKTEIEALKNLRHQH 69
Query: 879 LINLHDAFEDDDEMVLIFE 897
+ L+ E +++ ++ E
Sbjct: 70 ICQLYHVLETANKIFMVLE 88
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
L+E+GTG FGVV + R ++ A K I E E I +E +M L H KL+ L+
Sbjct: 8 FLKELGTGQFGVVKYGKWRGQYDV-AIKMIKEGSMSEDEFI-EEAKVMMNLSHEKLVQLY 65
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAA----------KFIPVSHNLEKELIRKEIDI 870
Y+ + EIG GA+G V + R+ K G F A + +P+S E ++R
Sbjct: 12 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH---- 67
Query: 871 MNQLHHPKLINLHDAF-----EDDDEMVLIFEVLDR 901
+ HP ++ L D + + ++ L+FE +D+
Sbjct: 68 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ 103
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 378 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 437
P P V + +G + +SW +P + +QGY ++ + R+N+ A + +
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 438 NIPNLIEGRQYEFRVYAQNEAG 459
+ +L+ Y FRV AQ++ G
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEG 97
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1985 PSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQI 2044
P P V + +G + +SW +P + +QGY ++ + R+N+ A + +
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCE--RPLQGYSVEYQLLNGGELHRLNIPNPAQTSV 75
Query: 2045 NIPNLIEGRQYEFRVYAQNEAG 2066
+ +L+ Y FRV AQ++ G
Sbjct: 76 VVEDLLPNHSYVFRVRAQSQEG 97
>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|C Chain C, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|D Chain D, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|E Chain E, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|F Chain F, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|G Chain G, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6W|H Chain H, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 443
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A + I + + L + EI
Sbjct: 146 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEI 205
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 206 EILKKLNHPCIIKIKNFFDAEDYYIVL 232
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 811 VDIKTSSVY-------DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKE 862
VD+ T ++Y + + LE+IG G+FG V + + +T + A K I + E E
Sbjct: 11 VDLGTENLYFQSMDPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIE 70
Query: 863 LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899
I++EI +++Q P + + ++ D ++ +I E L
Sbjct: 71 DIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 107
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDI-MNQLHHP 877
D + + E+G GA+GVV + R +G I A K I + N E++ + ++DI M + P
Sbjct: 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66
Query: 878 KLINLHDAFEDDDEMVLIFEVLD 900
+ + A + ++ + E++D
Sbjct: 67 FTVTFYGALFREGDVWICMELMD 89
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 95
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 96 SSGEKKDEVYLNL-VLD--YVPETVY 118
>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
pdb|3I6U|B Chain B, Structure And Activation Mechanism Of The Chk2 Dna-Damage
Checkpoint Kinase
Length = 419
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP-------VSHNLEKEL-IRKEI 868
++ D Y + + +G+GA G V ERKT A + I + + L + EI
Sbjct: 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEI 191
Query: 869 DIMNQLHHPKLINLHDAFEDDDEMVLI 895
+I+ +L+HP +I + + F+ +D +++
Sbjct: 192 EILKKLNHPCIIKIKNFFDAEDYYIVL 218
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAK--FIPVSHNLEKELIRKEIDIMNQLHHPKL 879
Y L+ +G+GA+G V + +TG A K + P L + +E+ ++ + H +
Sbjct: 27 YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV 86
Query: 880 INLHDAFEDDDEM 892
I L D F D+ +
Sbjct: 87 IGLLDVFTPDETL 99
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 296 LHWNPPK---YDGGLKVTHYVVERRDISMPHWICISTTCHDTTF--IVQGLTEGQEYLFH 350
+HW PP +G ++T Y + R S + T T +++GL G EY F
Sbjct: 37 IHWQPPAPATQNG--QITGYKIRYRKASRKSDVT-ETLVSGTQLSQLIEGLDRGTEYNFR 93
Query: 351 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 383
V A+ NG GP + ++ +S D+ P +
Sbjct: 94 VAALTINGTGPATDWLSAETFESDLDETRVPEV 126
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 1903 LHWNPPK---YDGGLKVTHYVVERRDISMPHWICISTTCHDTTF--IVQGLTEGQEYLFH 1957
+HW PP +G ++T Y + R S + T T +++GL G EY F
Sbjct: 37 IHWQPPAPATQNG--QITGYKIRYRKASRKSDVT-ETLVSGTQLSQLIEGLDRGTEYNFR 93
Query: 1958 VMAVNENGMGPPLEGINPIKAKSPYDKPSPPGI 1990
V A+ NG GP + ++ +S D+ P +
Sbjct: 94 VAALTINGTGPATDWLSAETFESDLDETRVPEV 126
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 287 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 345
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 196 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 252
Query: 346 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 405
EY+ V +V E PL G + K+ D SP GI + + + + W P
Sbjct: 253 EYVVSVSSVYEQHESTPLRG----RQKTGLD--SPTGID-FSDITANSFTVHWIAPR--- 302
Query: 406 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 456
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 303 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 352
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 1894 SEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWIC-ISTTCHDTTFIVQGLTEGQ 1952
+ I T + W PP + +T+++V + + +S + D ++ L G
Sbjct: 196 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 252
Query: 1953 EYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDG 2012
EY+ V +V E PL G + K+ D SP GI + + + + W P
Sbjct: 253 EYVVSVSSVYEQHESTPLRG----RQKTGLD--SPTGID-FSDITANSFTVHWIAPR--- 302
Query: 2013 GSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQN 2063
+ I GY I H R + + + I + NL G +Y + A N
Sbjct: 303 -ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALN 352
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 285 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 339
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 285 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 336
Query: 340 GLTEGQEYLFHVMAVNENGMGPPLEG 365
LT G EY+ ++A+N P L G
Sbjct: 337 NLTPGTEYVVSIVALNGREESPLLIG 362
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 1892 DVSEITKHTCTLHWNPPKYD-GGLKV----THYVVERRDISMPHWICISTTCHDTTFIVQ 1946
D S+IT ++ T+HW P+ G ++ H+ R+ +PH + +
Sbjct: 285 DFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPH--------SRNSITLT 336
Query: 1947 GLTEGQEYLFHVMAVNENGMGPPLEG 1972
LT G EY+ ++A+N P L G
Sbjct: 337 NLTPGTEYVVSIVALNGREESPLLIG 362
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 41 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 96
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 97 SSGEKKDEVYLNL-VLD--YVPETVY 119
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 116 GTPVPKCRWLRNGREISSGARYRVE--TAGGVFR--LHFNEVTDVDNGDYTCEAYNSVGF 171
G P P WL NG+ + VE G + L FN+ T +NG+YT A N +G
Sbjct: 31 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT 90
Query: 172 AHTS 175
A+ +
Sbjct: 91 ANQT 94
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1723 GTPVPKCRWLRNGREISSGARYRVE--TAGGVFR--LHFNEVTDVDNGDYTCEAYNSVGF 1778
G P P WL NG+ + VE G + L FN+ T +NG+YT A N +G
Sbjct: 31 GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT 90
Query: 1779 AHTS 1782
A+ +
Sbjct: 91 ANQT 94
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 40 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 95
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 96 SSGEKKDEVYLNL-VLD--YVPETVY 118
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 47 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 102
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 103 SSGEKKDEVYLNL-VLD--YVPETVY 125
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 36 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 91
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 92 SSGEKKDEVYLNL-VLD--YVPETVY 114
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHPKLIN 881
L EIG G+FG V+ R+ + + A K + S E I KE+ + +L HP I
Sbjct: 59 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQ 118
Query: 882 LHDAFEDDDEMVLIFE 897
+ + L+ E
Sbjct: 119 YRGCYLREHTAWLVME 134
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 380 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP-SQIN 438
P G+ V G V L WD P + R+ GY ++ + GS W+ ++ A+ +++
Sbjct: 11 PRGLVAVRTPRG--VLLHWDPP-ELVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELL 66
Query: 439 IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 468
+P LI+ YEFR+ A + +S PS+ +N
Sbjct: 67 VPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 1987 PPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAP-SQIN 2045
P G+ V G V L WD P + R+ GY ++ + GS W+ ++ A+ +++
Sbjct: 11 PRGLVAVRTPRG--VLLHWDPP-ELVPKRLDGYVLEGRQ-GSQGWEVLDPAVAGTETELL 66
Query: 2046 IPNLIEGRQYEFRVYAQNEAGLSLPSSASN 2075
+P LI+ YEFR+ A + +S PS+ +N
Sbjct: 67 VPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 110 LQCEATGTPVPKCRWLRNGREI-SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS 168
L+C+ATG P+P WL+ G R ++ G L + D G YTC A +S
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSS 84
Query: 169 VG 170
G
Sbjct: 85 SG 86
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 1717 LQCEATGTPVPKCRWLRNGREI-SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS 1775
L+C+ATG P+P WL+ G R ++ G L + D G YTC A +S
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYTCVATSS 84
Query: 1776 VG 1777
G
Sbjct: 85 SG 86
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 481 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 540
P I+ N + A +C TG P P ISWLK T R + TL I
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK--EGFTFPGRDPRATIQEQGTLQI 66
Query: 541 NSVYGVDADEYVCRAVNKGGVKSTKAEL 568
++ D Y C A + G S A L
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLII 2147
P I+ N + A +C TG P P ISWLK T R + TL I
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK--EGFTFPGRDPRATIQEQGTLQI 66
Query: 2148 NSVYGVDADEYVCRAVNKGGVKSTKAEL 2175
++ D Y C A + G S A L
Sbjct: 67 KNLRISDTGTYTCVATSSSGETSWSAVL 94
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 84 SSGEKKDEVYLNL-VLD--YVPETVY 106
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 84 SSGEKKDEVYLNL-VLD--YVPETVY 106
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 29 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 84
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 85 SSGEKKDEVYLNL-VLD--YVPETVY 107
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 84 SSGEKKDEVYLNL-VLD--YVPETVY 106
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 32 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 87
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 88 SSGEKKDEVYLNL-VLD--YVPETVY 110
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 97 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV 156
+ DL V + +CE + V +W +NG E+ R + G +L ++V
Sbjct: 15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPE 73
Query: 157 DNGDYT 162
D GDYT
Sbjct: 74 DEGDYT 79
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1704 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV 1763
+ DL V + +CE + V +W +NG E+ R + G +L ++V
Sbjct: 15 IADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPE 73
Query: 1764 DNGDYT 1769
D GDYT
Sbjct: 74 DEGDYT 79
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 378 PSPPGIPVVTQVGGDFVNLSWDKPLDD--GGSRIQGYWIDKHEVGSDAWQRV-NVAICAP 434
PS P V + V F+ L+W P D G + + K + A +RV N +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI---ARERVENTSHPGE 74
Query: 435 SQINIPNLIEGRQYEFRVYAQNEAG 459
Q+ I NL+ Y FRV AQN+ G
Sbjct: 75 MQVTIQNLMPATVYIFRVMAQNKHG 99
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 1985 PSPPGIPVVTQVGGDFVNLSWDKPLDD--GGSRIQGYWIDKHEVGSDAWQRV-NVAICAP 2041
PS P V + V F+ L+W P D G + + K + A +RV N +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGI---ARERVENTSHPGE 74
Query: 2042 SQINIPNLIEGRQYEFRVYAQNEAG 2066
Q+ I NL+ Y FRV AQN+ G
Sbjct: 75 MQVTIQNLMPATVYIFRVMAQNKHG 99
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 902 PHPPENLHADEFAGDSLTLYW-TPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFV 960
P P ++ A + + L W TP D G +T V K+ + + +S+ V
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 961 RVRNLAIGSTYEFRVMAENQYG 982
++NL + Y FRVMA+N++G
Sbjct: 78 TIQNLMPATVYIFRVMAQNKHG 99
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 185 RIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-- 242
++ P L + +G K+ G + ++ K+G VVQ+ D+ V + + I F
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 243 IKEIRKEDAGDY 254
+K + + DAG Y
Sbjct: 64 LKSVERSDAGRY 75
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 1792 RIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF-- 1849
++ P L + +G K+ G + ++ K+G VVQ+ D+ V + + I F
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLS 63
Query: 1850 IKEIRKEDAGDY 1861
+K + + DAG Y
Sbjct: 64 LKSVERSDAGRY 75
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVP-KCRWLRNGREISSGARYRVETAGGVFRLH 149
P F V KDL VP L CEA G P P W R +I A L+
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-------SVLN 151
Query: 150 FNEVTDVDNGDYTCEAYNSVGFAHTSSR 177
VT + ++CEA+N G A SSR
Sbjct: 152 VTGVT--QSTXFSCEAHNLKGLA--SSR 175
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 12/88 (13%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCEATGTPVP-KCRWLRNGREISSGARYRVETAGGVFRLH 1756
P F V KDL VP L CEA G P P W R +I A L+
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSP-------SVLN 151
Query: 1757 FNEVTDVDNGDYTCEAYNSVGFAHTSSR 1784
VT + ++CEA+N G A SSR
Sbjct: 152 VTGVT--QSTXFSCEAHNLKGLA--SSR 175
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 589 DKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAI--LTIRDASNVDTAP 646
+G+ V + G +P I W +D V+++ ++ SE+H I L+++ D
Sbjct: 15 SQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74
Query: 647 YRVVAEN 653
Y E+
Sbjct: 75 YWCQVED 81
>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|B Chain B, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|C Chain C, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|D Chain D, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|E Chain E, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|F Chain F, Crystal Structure Of Human Pas Kinase Bound To Adp
Length = 335
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK--------EIDIMNQ 873
Y + +G+GAFG V +++ KFI LE I EI I+++
Sbjct: 26 YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSR 85
Query: 874 LHHPKLINLHDAFEDDDEMVLIFE 897
+ H +I + D FE+ L+ E
Sbjct: 86 VEHANIIKVLDIFENQGFFQLVME 109
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 35.0 bits (79), Expect = 0.44, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 648
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 649 VVAENDLGMDSAIVKIQISDRP 670
++A N G SA + D P
Sbjct: 84 LLAANPFGQASASIMAAFMDNP 105
Score = 35.0 bits (79), Expect = 0.54, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 116 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 168
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 30 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 89
Query: 169 VGFAHTS 175
G A S
Sbjct: 90 FGQASAS 96
Score = 35.0 bits (79), Expect = 0.54, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1723 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 1775
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 30 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 89
Query: 1776 VGFAHTS 1782
G A S
Sbjct: 90 FGQASAS 96
Score = 31.6 bits (70), Expect = 4.8, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1158 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 1209
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 24 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 83
Query: 1210 IQLVNTVGSDSASCKVYVVDKP 1231
+ N G SAS +D P
Sbjct: 84 LLAANPFGQASASIMAAFMDNP 105
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHPKLIN 881
L EIG G+FG V+ R+ + + A K + S E I KE+ + +L HP I
Sbjct: 20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQ 79
Query: 882 LHDAFEDDDEMVLIFE 897
+ + L+ E
Sbjct: 80 YRGCYLREHTAWLVME 95
>pdb|1X5X|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type Iii Domain Containing Protein 3
Length = 109
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 22 YIIERREVGGAIWLKCNDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPS 74
YI+E E K Y+ + +++V NL Y+F++IA N+ GKS PS
Sbjct: 42 YILEMEEETSGYGFKPK-YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 1249 SLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAE 1308
SL W P +Y++E E +G+ K AY V L + +Y+F+V A
Sbjct: 25 SLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAY 84
Query: 1309 NQYGVSEPLEL 1319
N G S P E+
Sbjct: 85 NSEGKSNPSEV 95
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 1647 YNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPS 1681
Y+ + +++V NL Y+F++IA N+ GKS PS
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 381 PGIPVVTQVGGDFVNLSWDK----PLDDGGSRI-------QGYWIDKHEVGSDAWQRVNV 429
P PV+T+ G +++L W K P D+G S I GY G D
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL------ 64
Query: 430 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 464
+ NL +Y+F+V A N G S PS
Sbjct: 65 ------AYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 23/95 (24%)
Query: 1988 PGIPVVTQVGGDFVNLSWDK----PLDDGGSRI-------QGYWIDKHEVGSDAWQRVNV 2036
P PV+T+ G +++L W K P D+G S I GY G D
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL------ 64
Query: 2037 AICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPS 2071
+ NL +Y+F+V A N G S PS
Sbjct: 65 ------AYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 918 LTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMA 977
L+L W+ P E +Y++E ++ S K V+NL + Y+F+V+A
Sbjct: 24 LSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIA 83
Query: 978 ENQYGLSKPALTID 991
N G S P+ ++
Sbjct: 84 YNSEGKSNPSEVVE 97
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 661 IVKIQISDRPD-PPQFPTVEDIGHDSLALVWRAPIWDGGSN--ITNYIVEKREHPMSSWI 717
I + +SD P PPQ ++E + S+ + W P G N IT Y + R+ +
Sbjct: 19 ITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPP-SGTQNGFITGYKIRHRKTTRRGEM 77
Query: 718 RVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPS 754
TGL G QY F+V A V G PS
Sbjct: 78 ETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 289 ITKHTCTLHWNPP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLT 342
+ + + W PP + G K+ H RR + ++ ++ GL
Sbjct: 40 VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE------METLEPNNLWYLFTGLE 93
Query: 343 EGQEYLFHVMAVNENGMGPP 362
+G +Y F V A+ NG GPP
Sbjct: 94 KGSQYSFQVSAMTVNGTGPP 113
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 1896 ITKHTCTLHWNPP------KYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLT 1949
+ + + W PP + G K+ H RR + ++ ++ GL
Sbjct: 40 VNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE------METLEPNNLWYLFTGLE 93
Query: 1950 EGQEYLFHVMAVNENGMGPP 1969
+G +Y F V A+ NG GPP
Sbjct: 94 KGSQYSFQVSAMTVNGTGPP 113
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---------VSHNLEKELIRKEIDI 870
+ ++ L+ +G G FG V +E+ TG +A K + V+H L E +
Sbjct: 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL------TENRV 201
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ HP L L +F+ D + + E
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVME 228
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 35.0 bits (79), Expect = 0.50, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 648
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 649 VVAENDLGMDSAIVKIQISDRP 670
++A N G SA + D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 116 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 168
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 169 VGFAHTS 175
G A S
Sbjct: 86 FGQASAS 92
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1723 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 1775
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 1776 VGFAHTS 1782
G A S
Sbjct: 86 FGQASAS 92
Score = 31.6 bits (70), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1158 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 1209
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 1210 IQLVNTVGSDSASCKVYVVDKP 1231
+ N G SAS +D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---------VSHNLEKELIRKEIDI 870
+ ++ L+ +G G FG V +E+ TG +A K + V+H L E +
Sbjct: 151 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL------TENRV 204
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ HP L L +F+ D + + E
Sbjct: 205 LQNSRHPFLTALKYSFQTHDRLCFVME 231
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 35.0 bits (79), Expect = 0.53, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
LRN A++ A C ++ + W KG + R+ + EG L I +
Sbjct: 15 LRNEEAVEGATAMLWCELSKVAP--VEWRKGPENLRDGDRYILRQEGTRCELQICGLAMA 72
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
DA EY+C G + T A L I P
Sbjct: 73 DAGEYLCVC----GQERTSATLTIRALP 96
Score = 35.0 bits (79), Expect = 0.53, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
LRN A++ A C ++ + W KG + R+ + EG L I +
Sbjct: 15 LRNEEAVEGATAMLWCELSKVAP--VEWRKGPENLRDGDRYILRQEGTRCELQICGLAMA 72
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
DA EY+C G + T A L I P
Sbjct: 73 DAGEYLCVC----GQERTSATLTIRALP 96
>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
Length = 383
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---PVSHNLEKELIRKEID 869
++TSS Y + + +GTG+FG+V + ++G FA K + P N +E+D
Sbjct: 2 LETSS--KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKN-------RELD 52
Query: 870 IMNQLHHPKLINLHDAF 886
IM L H +I L D F
Sbjct: 53 IMKVLDHVNIIKLVDYF 69
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK-ELIRKEIDIMNQLHH-PKLINL 882
L E+G+G G V + R RKTG++ A K + S N E+ + I ++D++ + H P ++
Sbjct: 30 LGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQC 89
Query: 883 HDAFEDDDEMVLIFEVL 899
F + ++ + E++
Sbjct: 90 FGTFITNTDVFIAMELM 106
>pdb|2EDK|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 101
Score = 34.7 bits (78), Expect = 0.55, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 87 GGEKPDFIV-PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNG----REISSGARYRVET 141
G P IV PL+D V +G + + E + + W++NG RE S ARYR +
Sbjct: 4 GSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGA-QVMWMKNGVELTREDSFKARYRFKK 62
Query: 142 AGGVFRLHFNEVTDVDNGDY-------TCEA 165
G L F++V D G Y CEA
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNGGQCEA 93
Score = 34.7 bits (78), Expect = 0.55, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 1694 GGEKPDFIV-PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNG----REISSGARYRVET 1748
G P IV PL+D V +G + + E + + W++NG RE S ARYR +
Sbjct: 4 GSSGPVLIVTPLEDQQVFVGDRVEMAVEVSEEGA-QVMWMKNGVELTREDSFKARYRFKK 62
Query: 1749 AGGVFRLHFNEVTDVDNGDY-------TCEA 1772
G L F++V D G Y CEA
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNGGQCEA 93
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFE 887
IG G+FGVV++ + +G + A K + +K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 888 DDDE---MVLIFEVLDRPHPPENLH 909
E +V + VLD + PE ++
Sbjct: 84 SSGEKKDVVYLNLVLD--YVPETVY 106
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 88 GEKP--DFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV 145
G+KP F + + V G + E V K RW R G +IS+ +Y + T G
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGTR 62
Query: 146 FRLHFNEVTDVDNGDYTCEAYNS 168
L EV D G Y A +S
Sbjct: 63 HTLTVREVGPADQGSYAVIAGSS 85
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 1695 GEKP--DFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGV 1752
G+KP F + + V G + E V K RW R G +IS+ +Y + T G
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGTR 62
Query: 1753 FRLHFNEVTDVDNGDYTCEAYNS 1775
L EV D G Y A +S
Sbjct: 63 HTLTVREVGPADQGSYAVIAGSS 85
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEV 153
+ P ++P G L LQC A G+P+P +W +N ++ + +L+
Sbjct: 8 VEPTSQKLMP-GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------KLYMVPY 56
Query: 154 TDVDN-GDYTCEAYN 167
D+++ G Y C YN
Sbjct: 57 VDLEHQGTYWCHVYN 71
Score = 34.7 bits (78), Expect = 0.60, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 1701 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEV 1760
+ P ++P G L LQC A G+P+P +W +N ++ + +L+
Sbjct: 8 VEPTSQKLMP-GSTLVLQCVAVGSPIPHYQWFKNELPLTHETK----------KLYMVPY 56
Query: 1761 TDVDN-GDYTCEAYN 1774
D+++ G Y C YN
Sbjct: 57 VDLEHQGTYWCHVYN 71
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 23/108 (21%)
Query: 1005 PGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYV 1064
P P +++S+ L W PR+D G PI + V+ R + K + + +IP K
Sbjct: 6 PTPPNVTRLSDESVXLRWXVPRND-GLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPK-- 62
Query: 1065 LWVSE-GKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAV 1111
W SE GKS + VT L H Y FR+ AV
Sbjct: 63 -WNSELGKSFTAS------------------VTDLKPQHTYRFRILAV 91
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 672 PPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSW------IRVGNTRFT 725
PP P V + +S+ L W P DG + + + +W I G ++
Sbjct: 5 PPTPPNVTRLSDESVXLRWXVPRNDGLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPKWN 64
Query: 726 -------TMAITGLSPGHQYEFRVYAENVYGRSD 752
T ++T L P H Y FR+ A VY +D
Sbjct: 65 SELGKSFTASVTDLKPQHTYRFRILA--VYSNND 96
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 1005 PGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYV 1064
P P +++S+ L W PR+D G PI + V+ R++ K + + +IP K
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK-- 61
Query: 1065 LWVSE-GKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAV 1111
W SE GKS + VT L H Y FR+ AV
Sbjct: 62 -WNSELGKSFTAS------------------VTDLKPQHTYRFRILAV 90
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of
Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of
Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of
Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of
Ihog
Length = 214
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 1005 PGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYV 1064
P P +++S+ L W PR+D G PI + V+ R++ K + + +IP K
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRND-GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK-- 61
Query: 1065 LWVSE-GKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAV 1111
W SE GKS + VT L H Y FR+ AV
Sbjct: 62 -WNSELGKSFTAS------------------VTDLKPQHTYRFRILAV 90
>pdb|1LWR|A Chain A, Solution Structure Of The Ncam Fibronectin Type Iii Module
2
Length = 96
Score = 34.7 bits (78), Expect = 0.67, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 926 RDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSK 985
+D+GGS I +Y+V+ + S ++ + V +++L + YE V+AENQ G SK
Sbjct: 26 QDDGGSPIRHYLVKYRALASEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSK 85
Query: 986 PA 987
A
Sbjct: 86 AA 87
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 1257 DDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYD----VFGLETNRQYRFRVRAENQYG 1312
DDGGSPI +Y+V KY + W +R P+ + L+ N +Y V AENQ G
Sbjct: 27 DDGGSPIRHYLV-KYRALASEWKPE---IRLPSGSDHVMLKSLDWNAEYEVYVVAENQQG 82
Query: 1313 VSE 1315
S+
Sbjct: 83 KSK 85
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG----KAFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 84 SSGEKKDEVYLNL-VLD--YVPETVY 106
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 34.3 bits (77), Expect = 0.73, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 103 PLGKL-LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 161
P G L L + G PV RW ++G ++S R ++E AG L D G+Y
Sbjct: 10 PGGDLELVVHLSGPGGPV---RWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEY 66
Query: 162 TCEA 165
C+A
Sbjct: 67 LCDA 70
Score = 34.3 bits (77), Expect = 0.73, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 1710 PLGKL-LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDY 1768
P G L L + G PV RW ++G ++S R ++E AG L D G+Y
Sbjct: 10 PGGDLELVVHLSGPGGPV---RWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEY 66
Query: 1769 TCEA 1772
C+A
Sbjct: 67 LCDA 70
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---------VSHNLEKELIRKEIDI 870
+ ++ L+ +G G FG V +E+ TG +A K + V+H L E +
Sbjct: 8 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL------TENRV 61
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ HP L L +F+ D + + E
Sbjct: 62 LQNSRHPFLTALKYSFQTHDRLCFVME 88
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG----KAFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVLIFEVLDRPHPPENLH 909
E DE+ L VLD + PE ++
Sbjct: 84 SSGEKKDEVYLNL-VLD--YVPETVY 106
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 809 QPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE---KELIR 865
QPV T + + Y +L G G FG V C+ R TG ++A K + + + +
Sbjct: 179 QPV---TKNTFRQYRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMAL 232
Query: 866 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
E I+ +++ +++L A+E D + L+ +++
Sbjct: 233 NEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN 267
>pdb|3KJ4|L Chain L, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|B Chain B, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 219
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + ++ RN +N+ A +Q PKP I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLLNSRNR---KNYLAWYQQKPGQSPKPLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVC 553
R G +TL I+SV D Y C
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYC 94
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + ++ RN +N+ A +Q PKP I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLLNSRNR---KNYLAWYQQKPGQSPKPLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160
R G +TL I+SV D Y C
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYC 94
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---------VSHNLEKELIRKEIDI 870
+ ++ L+ +G G FG V +E+ TG +A K + V+H L E +
Sbjct: 9 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL------TENRV 62
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ HP L L +F+ D + + E
Sbjct: 63 LQNSRHPFLTALKYSFQTHDRLCFVME 89
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 34.3 bits (77), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 15/87 (17%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIP---------VSHNLEKELIRKEIDI 870
+ ++ L+ +G G FG V +E+ TG +A K + V+H L E +
Sbjct: 10 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTL------TENRV 63
Query: 871 MNQLHHPKLINLHDAFEDDDEMVLIFE 897
+ HP L L +F+ D + + E
Sbjct: 64 LQNSRHPFLTALKYSFQTHDRLCFVME 90
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 34.3 bits (77), Expect = 0.77, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLI 880
HY ++++G G F V G+ +A K I ++E ++E D+ +HP ++
Sbjct: 30 HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL 89
Query: 881 NL 882
L
Sbjct: 90 RL 91
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 34.3 bits (77), Expect = 0.79, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLRNGR-------EISSGARYRVETAGGVFRLH------F 150
+G + L CEA G+PVP+ +W G+ ++ GAR + H
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 151 NEVTDVDNGDYTCEAYNSVGFAHTSS--RVK 179
+ + + D G Y C A N H + RVK
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 34.3 bits (77), Expect = 0.79, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLRNGR-------EISSGARYRVETAGGVFRLH------F 1757
+G + L CEA G+PVP+ +W G+ ++ GAR + H
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 1758 NEVTDVDNGDYTCEAYNSVGFAHTSS--RVK 1786
+ + + D G Y C A N H + RVK
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 480 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS----REITPSARHHIFAEGDT 535
AP+I R+ N + +A C G P P W K EI+ S+ +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 536 YTL--IINSVYGVDADEYVCRAVNKGGVKSTKAELII 570
YT I+N D EY C A N G S L +
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGS----REITPSARHHIFAEGDT 2142
AP+I R+ N + +A C G P P W K EI+ S+ +
Sbjct: 92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151
Query: 2143 YTL--IINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177
YT I+N D EY C A N G S L +
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVF----RLHFNEVTDV---- 156
G+ + C++ G P P+ W R+ +G + + G F + ++ E+ V
Sbjct: 107 GQDAMMYCKSVGYPHPEWMW----RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQI 162
Query: 157 --DNGDYTCEAYNSVGFAHTSSRVKI 180
D G+Y C A NS+G A S+ +++
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRV 188
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVF----RLHFNEVTDV---- 1763
G+ + C++ G P P+ W R+ +G + + G F + ++ E+ V
Sbjct: 107 GQDAMMYCKSVGYPHPEWMW----RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQI 162
Query: 1764 --DNGDYTCEAYNSVGFAHTSSRVKI 1787
D G+Y C A NS+G A S+ +++
Sbjct: 163 TEDPGEYECNATNSIGSASVSTVLRV 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 17/175 (9%)
Query: 500 FQCTITGCPKPTIS--WLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557
QC +T + W K E+T + ++ IN D+ EY C +
Sbjct: 23 LQCNLTSSSHTLMYSYWTKNGVELTATRKN-----ASNMEYRINKPRAEDSGEYHC-VYH 76
Query: 558 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRD---- 613
A + + AP R + ++G++ ++ GYP P+ W +
Sbjct: 77 FVSAPKANATIEVKAAPDITGHKRSENK---NEGQDAMMYCKSVGYPHPEWMWRKKENGV 133
Query: 614 -NEVIESGGHFHVETSERHAILTIRDAS-NVDTAPYRVVAENDLGMDSAIVKIQI 666
E+ S G F + E + L I + D Y A N +G S +++
Sbjct: 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 34.3 bits (77), Expect = 0.83, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 105 GKLLTLQCE-ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
G TLQCE + PV W + + G +Y + G V L + + DNG Y+C
Sbjct: 22 GATATLQCELSKAAPV---EWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSC 78
Score = 34.3 bits (77), Expect = 0.83, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 1712 GKLLTLQCE-ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
G TLQCE + PV W + + G +Y + G V L + + DNG Y+C
Sbjct: 22 GATATLQCELSKAAPV---EWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSC 78
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV++ + +G + A K + K +E+ IM +L H ++ L F
Sbjct: 28 IGNGSFGVVYQAKLCDSGELVAIKKVLQG----KAFKNRELQIMRKLDHCNIVRLRYFFY 83
Query: 887 ---EDDDEMVL 894
E DE+ L
Sbjct: 84 SSGEKKDEVYL 94
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 809 QPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE---KELIR 865
QPV T + + Y +L G G FG V C+ R TG ++A K + + + +
Sbjct: 179 QPV---TKNTFRQYRVL---GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMAL 232
Query: 866 KEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
E I+ +++ +++L A+E D + L+ +++
Sbjct: 233 NEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMN 267
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPKLINLH 883
LE+IG G+FG V + + +T + A K I + E E I++EI +++Q P + +
Sbjct: 12 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 884 DAFEDDDEMVLIFEVL 899
++ D ++ +I E L
Sbjct: 72 GSYLKDTKLWIIMEYL 87
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 152
F LK G TLQCE + V W + + G RY ++ G L ++
Sbjct: 11 FTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHD 68
Query: 153 VTDVDNGDYTC 163
++ D G+Y+C
Sbjct: 69 LSVADAGEYSC 79
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 1759
F LK G TLQCE + V W + + G RY ++ G L ++
Sbjct: 11 FTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHD 68
Query: 1760 VTDVDNGDYTC 1770
++ D G+Y+C
Sbjct: 69 LSVADAGEYSC 79
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
L+ A + A QC ++ + W KG + R+ + +G L I+ +
Sbjct: 15 LKTKEASEGATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVA 72
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCMC----GQERTSATLTVRALP 96
Score = 31.2 bits (69), Expect = 6.4, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
L+ A + A QC ++ + W KG + R+ + +G L I+ +
Sbjct: 15 LKTKEASEGATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVA 72
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCMC----GQERTSATLTVRALP 96
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 152
F LKDL V G TL+C + P +W + G +Y + G + L
Sbjct: 11 FQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRN 69
Query: 153 VTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
+ D+G Y+C S G TS+ + + P
Sbjct: 70 LRPQDSGRYSC----SFGDQTTSATLTVTALP 97
Score = 34.3 bits (77), Expect = 0.88, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNE 1759
F LKDL V G TL+C + P +W + G +Y + G + L
Sbjct: 11 FQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRN 69
Query: 1760 VTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
+ D+G Y+C S G TS+ + + P
Sbjct: 70 LRPQDSGRYSC----SFGDQTTSATLTVTALP 97
Score = 33.1 bits (74), Expect = 2.0, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
Score = 33.1 bits (74), Expect = 2.0, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPKLINLH 883
LE+IG G+FG V + + +T + A K I + E E I++EI +++Q P + +
Sbjct: 27 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 86
Query: 884 DAFEDDDEMVLIFEVL 899
++ D ++ +I E L
Sbjct: 87 GSYLKDTKLWIIMEYL 102
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFH|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - Apo
pdb|3TFI|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFI|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Substrate
Dmsp
pdb|3TFJ|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
pdb|3TFJ|B Chain B, Dmsp-Dependent Demethylase From P. Ubique - With Cofactor
Thf
Length = 369
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 19/177 (10%)
Query: 662 VKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN 721
V+I D + Q T D+ + + PI D N+ N V + WI + +
Sbjct: 66 VEISGKDSAELVQLMTCRDLSKSKIGRCYYCPIIDENGNLVNDPVVLKLDENKWWISIAD 125
Query: 722 TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQ------Y 775
+ A GL+ GH+++ ++ E V + F K+I + + +
Sbjct: 126 SDVIFFA-KGLASGHKFDVKI-VEPVVDIMAIQGPKSFALMEKVFGKKITELKFFGFDYF 183
Query: 776 DFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDH-YDILEEIGTG 831
DF+ T I K Y+ YV + S +YDH +++ +E G
Sbjct: 184 DFEGTKHLIARSGWSKQGGYEVYVENTQS----------GQKLYDHLFEVGKEFNVG 230
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNLEKELIRKEIDIMNQLHHPKLINLH 883
LE+IG G+FG V + + +T + A K I + E E I++EI +++Q P + +
Sbjct: 12 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY 71
Query: 884 DAFEDDDEMVLIFEVL 899
++ D ++ +I E L
Sbjct: 72 GSYLKDTKLWIIMEYL 87
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin Binding
Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 508 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 567
PK + W K +EI PS ++ +G L IN+ D EY A G + E
Sbjct: 35 PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTE 90
Query: 568 LIIMTAP 574
L + + P
Sbjct: 91 LFVRSGP 97
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 2115 PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174
PK + W K +EI PS ++ +G L IN+ D EY A G + E
Sbjct: 35 PKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTE 90
Query: 2175 LIIMTAP 2181
L + + P
Sbjct: 91 LFVRSGP 97
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
LR+ +I+ A +C ++ + W KG + RH + +G L I +
Sbjct: 15 LRHQESIEGATATLRCELS--KAAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVA 72
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCVC----GEERTSATLTVKALP 96
Score = 33.9 bits (76), Expect = 0.99, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
LR+ +I+ A +C ++ + W KG + RH + +G L I +
Sbjct: 15 LRHQESIEGATATLRCELS--KAAPVEWRKGRESLRDGDRHSLRQDGAVCELQICGLAVA 72
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
DA EY C G + T A L + P
Sbjct: 73 DAGEYSCVC----GEERTSATLTVKALP 96
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 104 LGKLLTLQCEATGTPVPKCRWLRNGR-------EISSGARYRVETAGGVFRLH------F 150
+G + L CEA G+PVP+ +W G+ ++ GAR + H
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 151 NEVTDVDNGDYTCEAYNSVGFAHTSS--RVK 179
+ + + D G Y C A N H + RVK
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 1711 LGKLLTLQCEATGTPVPKCRWLRNGR-------EISSGARYRVETAGGVFRLH------F 1757
+G + L CEA G+PVP+ +W G+ ++ GAR + H
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 1758 NEVTDVDNGDYTCEAYNSVGFAHTSS--RVK 1786
+ + + D G Y C A N H + RVK
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 123 RWLRNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163
+WL+NG+EI SG++Y E+ G L ++ + D+ Y C
Sbjct: 48 KWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1730 RWLRNGREIS-SGARYRVETAGGVFRLHFNEVTDVDNGDYTC 1770
+WL+NG+EI SG++Y E+ G L ++ + D+ Y C
Sbjct: 48 KWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 89
>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major
pdb|3E3P|B Chain B, Glycogen Synthase Kinase From Leishmania Major
Length = 360
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 812 DIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI---PVSHNLEKELIRKEI 868
D ++ D + + G G FG V +E+ TG A K + P N E ++++
Sbjct: 15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQD-- 72
Query: 869 DIMNQLHHPKLINLHDAF----EDDDEMVLIFEVLDRPHPPENLH 909
+ LHHP ++ L F E D + + V++ + P+ LH
Sbjct: 73 --LAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVME--YVPDTLH 113
>pdb|2JJW|A Chain A, Structure Of Human Signal Regulatory Protein (Sirp) Gamma
Length = 127
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 89 EKPDFIVPLKDLVVPLGKLLTLQCEATG-TPVPKCRWLRN---GREI----SSGARYRVE 140
E+ I P K L+V +GK TL C T PV W R GRE+ G RV
Sbjct: 2 EELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRGVGPGRELIYNQKEGHFPRVT 61
Query: 141 TAGGV-------FRLHFNEVTDVDNGDYTCEAY 166
T + F + + +T D G Y C +
Sbjct: 62 TVSDLTKRNNMDFSIRISSITPADVGTYYCVKF 94
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 1696 EKPDFIVPLKDLVVPLGKLLTLQCEATG-TPVPKCRWLRN---GREI----SSGARYRVE 1747
E+ I P K L+V +GK TL C T PV W R GRE+ G RV
Sbjct: 2 EELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRGVGPGRELIYNQKEGHFPRVT 61
Query: 1748 TAGGV-------FRLHFNEVTDVDNGDYTCEAY 1773
T + F + + +T D G Y C +
Sbjct: 62 TVSDLTKRNNMDFSIRISSITPADVGTYYCVKF 94
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
++ + + + L E
Sbjct: 67 VVKFYGHRREGNIQYLFLE 85
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 1244 TPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRF 1303
+P S +++W+ P+ G I NY + E T + V S +Y + GL+ +Y F
Sbjct: 30 SPTSITVTWETPVSGNGE-IQNYKLYYMEKGTDKEQDVD--VSSHSYTINGLKKYTEYSF 86
Query: 1304 RVRAENQY--GVSEP 1316
RV A N++ GVS P
Sbjct: 87 RVVAYNKHGPGVSTP 101
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 899 LDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST-VWTKVSSYVTT 957
+ P PP ++H +G S L T +D+GG+ I Y+V+ + + W +
Sbjct: 6 MREPSPP-SIHGQPSSGKSFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 63
Query: 958 PFVRVRNLAIGSTYEFRVMAENQYGLSKPAL 988
+ + +L YE ++ A N+ G S+P +
Sbjct: 64 DHIILEHLQWTMGYEVQITAANRLGYSEPTV 94
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 1104 YEFRVCAVNAAGQGPWSSSSDIIMCC----APPCAPKIT 1138
Y+FRV +NA G+GP+S S C PCA KI+
Sbjct: 59 YKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKIS 97
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 598 IPFT--GYPKPKITWYRDNEVIESGGHFHVETSE-------RHAILTIRDASNVDTAPYR 648
IPF+ G P P + W + V+ E E RH L + ++V+ Y
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 649 VVAENDLGMDSAIVKIQISDRP 670
++A N G SA + D P
Sbjct: 80 LLAANPFGQASASIMAAFMDNP 101
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 116 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 168
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 169 VGFAHTS 175
G A S
Sbjct: 86 FGQASAS 92
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 1723 GTPVPKCRWLRNGREISSGARYRVE----TAGGVFR---LHFNEVTDVDNGDYTCEAYNS 1775
G P P RWL NG ++ + E A R L N+ T V+NG+YT A N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 1776 VGFAHTS 1782
G A S
Sbjct: 86 FGQASAS 92
Score = 31.2 bits (69), Expect = 6.2, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 1158 VPFS--GRPKPTPIWTVNGDEVSPDGRIK---FETSENQTIYRN---KSAKRATDSGSYT 1209
+PFS G+P P+ W NG ++ I E + N+T+ + ++G+YT
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 1210 IQLVNTVGSDSASCKVYVVDKPSP--PQGPLDVSDITPESCSLSWKP 1254
+ N G SAS +D P P+ P+ P++ S S P
Sbjct: 80 LLAANPFGQASASIMAAFMDNPFEFNPEDPI------PDTNSTSGDP 120
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 1212 LVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 1271
L +T+ S A V ++ SPP+ V+D T + ++SW+ + IT + V+
Sbjct: 94 LKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTET----ITGFQVDAV 148
Query: 1272 ES--ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1329
+ T + VRS Y + GL+ Y+ + N S P+ +D S
Sbjct: 149 PANGQTPIQRTIKPDVRS--YTITGLQPGTDYKIYLYTLNDNARSSPVVIDAS------- 199
Query: 1330 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSKIRP 1387
T D P + + N+ + W PR ++I GY + + P G P + + RP
Sbjct: 200 TAIDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKP-GSPPREVVPRPRP 252
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA 885
E +G G FG + R+TG + K + + KE+ +M L HP ++
Sbjct: 16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGV 75
Query: 886 FEDDDEMVLIFEVL 899
D + I E +
Sbjct: 76 LYKDKRLNFITEYI 89
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment Of
Human Fibronectin
Length = 271
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Query: 1212 LVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKY 1271
L +T+ S A V ++ SPP+ V+D T + ++SW+ + IT + V+
Sbjct: 75 LKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTET----ITGFQVDAV 129
Query: 1272 ES--ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPF 1329
+ T + VRS Y + GL+ Y+ + N S P+ +D S
Sbjct: 130 PANGQTPIQRTIKPDVRS--YTITGLQPGTDYKIYLYTLNDNARSSPVVIDAS------- 180
Query: 1330 TVPDPPGQPQIVDWDTNNATLMWDRPRTDGGSKIQGYKMLLKTPTGELPTTIWSKIRP 1387
T D P + + N+ + W PR ++I GY + + P G P + + RP
Sbjct: 181 TAIDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKP-GSPPREVVPRPRP 233
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHP 877
HY + + +G G FG V + TG+ A K + ++ IR+EI + HP
Sbjct: 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHP 76
Query: 878 KLINLHDAFEDDDEMVLIFE 897
+I L+ ++ ++ E
Sbjct: 77 HIIKLYQVISTPSDIFMVME 96
>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|B Chain B, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
pdb|3NR9|C Chain C, Structure Of Human Cdc2-Like Kinase 2 (Clk2)
Length = 368
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE--KELIRKEIDIMNQLHHP 877
+ Y+I+ +G G FG V +C + + G A + + N+E KE R EI+++ +++
Sbjct: 33 ERYEIVSTLGEGTFGRVVQCVDHRRGGARVA--LKIIKNVEKYKEAARLEINVLEKINEK 90
Query: 878 K------LINLHDAFEDDDEMVLIFEVL 899
+ + D F+ M + FE+L
Sbjct: 91 DPDNKNLCVQMFDWFDYHGHMCISFELL 118
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 97 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV 156
LKDL V G TL+C + P +W + G +Y + G L +
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 157 DNGDYTCEAYNSVGFAHTSSRVKIGTPP 184
D+G Y+C S G TS+ + + P
Sbjct: 74 DSGRYSC----SFGDQTTSATLTVTALP 97
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 1704 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV 1763
LKDL V G TL+C + P +W + G +Y + G L +
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 1764 DNGDYTCEAYNSVGFAHTSSRVKIGTPP 1791
D+G Y+C S G TS+ + + P
Sbjct: 74 DSGRYSC----SFGDQTTSATLTVTALP 97
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 487 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 546
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 547 DADEYVCRAVNKGGVKSTKAELIIMTAP 574
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGV 2153
L++ ++ A +C ++ P + W G+ + P ++ + EG L++ ++
Sbjct: 15 LKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAXLELVVRNLRPQ 73
Query: 2154 DADEYVCRAVNKGGVKSTKAELIIMTAP 2181
D+ Y C G ++T A L + P
Sbjct: 74 DSGRYSCSF----GDQTTSATLTVTALP 97
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64
Query: 879 LINLHDAFEDDDEMVLIFE 897
++ + + + L E
Sbjct: 65 VVKFYGHRREGNIQYLFLE 83
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 18 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 77
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 78 NVIGLLDVF 86
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 827 EIGTGAFGVV-----HRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLIN 881
E+G GAFG V + K + A K + ++ ++E +++ L H ++
Sbjct: 22 ELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVK 81
Query: 882 LHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGS-EITNYVVEK 940
+ D D ++++FE + H N D++ L PR G ++ +
Sbjct: 82 FYGVCGDGDPLIMVFEYMK--HGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA 139
Query: 941 KDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTID 991
S + S + + RN +G+ ++ +G+S+ + D
Sbjct: 140 SQIASGMVYLASQHFVHRDLATRNCLVGANLLVKI---GDFGMSRDVYSTD 187
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 42 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 101
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 102 NVIGLLDVF 110
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 18 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 77
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 78 NVIGLLDVF 86
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 1052 SMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLEL------LLMFIPN-----RVTSLIE 1100
S + I DTSLK V W G+ G G + E + ++PN RVT L
Sbjct: 25 SFSEILDTSLK-VSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTA 83
Query: 1101 NHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPK 1136
Y V A+ + GQG S+S+ I PP P
Sbjct: 84 LTTYTIEVAAMTSKGQGQVSAST--ISSGVPPSGPS 117
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 556
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 557 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 597
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 2164 NKGGVKSTKAELIIMTAPK 2182
+ ++ I + PK
Sbjct: 75 CESRKLEKGIQVEIYSFPK 93
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 41 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 100
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 101 NVIGLLDVF 109
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 556
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 557 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 597
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 2164 NKGGVKSTKAELIIMTAPK 2182
+ ++ I + PK
Sbjct: 75 CESRKLEKGIQVEIYSFPK 93
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 42 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 101
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 102 NVIGLLDVF 110
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 18 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 77
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 78 NVIGLLDVF 86
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIFE 897
++ + + + L E
Sbjct: 67 VVKFYGHRREGNIQYLFLE 85
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 285 DVSEITK----HTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPHWICISTTCHDTTFI 337
D++ IT+ + W PP G K+T Y++ ++I + WI + + T
Sbjct: 14 DLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQ 72
Query: 338 VQGLTEGQEYLFHVMAVNENGMGP 361
+ L Y F + A N G+GP
Sbjct: 73 IMDLNLDTMYYFRIQARNSKGVGP 96
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 1892 DVSEITK----HTCTLHWNPPKYDGGLKVTHYVV---ERRDISMPHWICISTTCHDTTFI 1944
D++ IT+ + W PP G K+T Y++ ++I + WI + + T
Sbjct: 14 DLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGDRLTHQ 72
Query: 1945 VQGLTEGQEYLFHVMAVNENGMGP 1968
+ L Y F + A N G+GP
Sbjct: 73 IMDLNLDTMYYFRIQARNSKGVGP 96
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 1233 PPQGPLDVSDIT----PESCSLSWKPPLDDGG---SPITNYVVEKYESATGFWSKLSSFV 1285
P P D++ IT P + +SW+PPL+ G + I Y ++K + + S
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGD 67
Query: 1286 RSPAYDVFGLETNRQYRFRVRAENQYGV 1313
R + + L + Y FR++A N GV
Sbjct: 68 RL-THQIMDLNLDTMYYFRIQARNSKGV 94
>pdb|3CSV|A Chain A, Crystal Structure Of A Putative Aminoglycoside
Phosphotransferase (Yp_614837.1) From Silicibacter Sp.
Tm1040 At 2.15 A Resolution
Length = 333
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 446 RQY-EF--RVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 488
R Y EF RV+A E GL+ P+ AS + +I + + A APE++ LR
Sbjct: 287 RHYIEFVPRVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLR 332
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 2053 RQY-EF--RVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLR 2095
R Y EF RV+A E GL+ P+ AS + +I + + A APE++ LR
Sbjct: 287 RHYIEFVPRVWAHFERGLAHPALASAAEEILNALPAPAPEVLERLR 332
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 497 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 556
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 557 NKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVK 597
+ ++ I + PK P + + G+ + VK
Sbjct: 75 CESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVK 112
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163
+ C+ TGC P SW +I + EG T TL +N V + Y+C A
Sbjct: 18 SVSLTCSTTGCESPFFSW---RTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT 74
Query: 2164 NKGGVKSTKAELIIMTAPK 2182
+ ++ I + PK
Sbjct: 75 CESRKLEKGIQVEIYSFPK 93
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 32 ERYQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 91
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 92 NVIGLLDVF 100
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 778 DETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVH 837
+E + +RG +K + D+ F + ++ + V++ + + + IG G FG V+
Sbjct: 151 EEICQNLRGDVFQKFIESDK--FTRFCQW--KNVELNIHLTMNDFSVHRIIGRGGFGEVY 206
Query: 838 RCRERKTGNIFAAK 851
CR+ TG ++A K
Sbjct: 207 GCRKADTGKMYAMK 220
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 824 ILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLH 883
+L+E+G+G FGVV + + ++ A K I E E +E M +L HPKL+ +
Sbjct: 12 LLKELGSGQFGVVKLGKWKGQYDV-AVKMIKEGSMSEDEFF-QEAQTMMKLSHPKLVKFY 69
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 6 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 65
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 66 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 97
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 778 DETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVH 837
+E + +RG +K + D+ F + ++ + V++ + + + IG G FG V+
Sbjct: 151 EEICQNLRGDVFQKFIESDK--FTRFCQW--KNVELNIHLTMNDFSVHRIIGRGGFGEVY 206
Query: 838 RCRERKTGNIFAAK 851
CR+ TG ++A K
Sbjct: 207 GCRKADTGKMYAMK 220
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 778 DETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVH 837
+E + +RG +K + D+ F + ++ + V++ + + + IG G FG V+
Sbjct: 151 EEICQNLRGDVFQKFIESDK--FTRFCQW--KNVELNIHLTMNDFSVHRIIGRGGFGEVY 206
Query: 838 RCRERKTGNIFAAK 851
CR+ TG ++A K
Sbjct: 207 GCRKADTGKMYAMK 220
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 778 DETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVH 837
+E + +RG +K + D+ F + ++ + V++ + + + IG G FG V+
Sbjct: 150 EEICQNLRGDVFQKFIESDK--FTRFCQW--KNVELNIHLTMNDFSVHRIIGRGGFGEVY 205
Query: 838 RCRERKTGNIFAAK 851
CR+ TG ++A K
Sbjct: 206 GCRKADTGKMYAMK 219
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 90 KPDFIVPLKDLVVPLGKLLTLQC-EATGTPVPKCRWLRNGREISSG----------ARYR 138
KP VP V +G L C E G+P + W ++G + + + +
Sbjct: 107 KPTISVPSS---VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 139 VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 175
++ G L F+ VT D+G+Y C+A N G A S
Sbjct: 164 IDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 1697 KPDFIVPLKDLVVPLGKLLTLQC-EATGTPVPKCRWLRNGREISSG----------ARYR 1745
KP VP V +G L C E G+P + W ++G + + + +
Sbjct: 107 KPTISVPSS---VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163
Query: 1746 VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782
++ G L F+ VT D+G+Y C+A N G A S
Sbjct: 164 IDPKSG--DLIFDPVTAFDSGEYYCQAQNGYGTAMRS 198
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS---HNLEKELIRKEIDIMNQLHHPK 878
+++ E +GTG FG V R + TG A K N E+ + EI IM +L+HP
Sbjct: 16 WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCL--EIQIMKKLNHPN 73
Query: 879 LINLHDA 885
+++ +
Sbjct: 74 VVSAREV 80
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 822 YDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS---HNLEKELIRKEIDIMNQLHHPK 878
+++ E +GTG FG V R + TG A K N E+ + EI IM +L+HP
Sbjct: 17 WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCL--EIQIMKKLNHPN 74
Query: 879 LINLHDA 885
+++ +
Sbjct: 75 VVSAREV 81
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 562
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 2169
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 1077 RGSTAQFLELLLMFIPN-RVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMC 1128
+G + LL +P+ +T+L +YE +VCA A G+GP+SS ++ C
Sbjct: 42 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSS---LVSC 91
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLE-KELIRKEIDIMNQLHHPK 878
+ +D+++ +G GA+G V R T A K + + ++ E I+KEI I L+H
Sbjct: 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINAMLNHEN 66
Query: 879 LINLHDAFEDDDEMVLIF------EVLDRPHP 904
++ + + + L E+ DR P
Sbjct: 67 VVKFYGHRREGNIQYLFLEYCSGGELFDRIEP 98
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 703 NYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYAENVYG 749
NY + E + W V T + +T + P Y+FRV A NV+G
Sbjct: 201 NYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHG 247
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 1094 RVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEE 1153
++T + + Y+FRV AVN G +++ S P AP ++L + + TV +
Sbjct: 226 QLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGS 285
Query: 1154 FTITV 1158
T+T+
Sbjct: 286 VTVTI 290
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 562
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 2169
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 1077 RGSTAQFLELLLMFIPN-RVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMC 1128
+G + LL +P+ +T+L +YE +VCA A G+GP+SS ++ C
Sbjct: 43 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSS---LVSC 92
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 562
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK-----GGVK 2169
R G +TL I+SV D Y C+ N GG K
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSNNLRTFGGGTK 108
>pdb|3DUR|A Chain A, Crystal Structure Of Sag173-04
pdb|3DUR|C Chain C, Crystal Structure Of Sag173-04
Length = 112
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
Score = 32.3 bits (72), Expect = 2.9, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA 885
+++G G FG V K + P S ++E L E ++M L H KL+ LH A
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFL--AEANVMKTLQHDKLVKLH-A 250
Query: 886 FEDDDEMVLIFEVLDRPHPPENLHADE 912
+ + +I E + + + L +DE
Sbjct: 251 VVTKEPIYIITEFMAKGSLLDFLKSDE 277
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA 885
+++G G FG V K + P S ++E L E ++M L H KL+ LH A
Sbjct: 188 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFL--AEANVMKTLQHDKLVKLH-A 244
Query: 886 FEDDDEMVLIFEVLDRPHPPENLHADE 912
+ + +I E + + + L +DE
Sbjct: 245 VVTKEPIYIITEFMAKGSLLDFLKSDE 271
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG+ A K + P + + +E+ ++ + H
Sbjct: 28 ERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 87
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 88 NVIGLLDVF 96
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 93 FIVPLKDLVVPLGKLLTLQCE-ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 151
FI +K+ G LQCE + PV W + + G RY + G L +
Sbjct: 11 FIEDVKNQEAREGATAVLQCELSKAAPV---EWRKGSETLRGGDRYSLRQDGTRCELQIH 67
Query: 152 EVTDVDNGDYTC 163
++ D G+Y+C
Sbjct: 68 GLSVADTGEYSC 79
Score = 32.3 bits (72), Expect = 3.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCE-ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 1758
FI +K+ G LQCE + PV W + + G RY + G L +
Sbjct: 11 FIEDVKNQEAREGATAVLQCELSKAAPV---EWRKGSETLRGGDRYSLRQDGTRCELQIH 67
Query: 1759 EVTDVDNGDYTC 1770
++ D G+Y+C
Sbjct: 68 GLSVADTGEYSC 79
Score = 31.2 bits (69), Expect = 7.4, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 484 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 543
I ++N A + A QC ++ + W KGS + R+ + +G L I+ +
Sbjct: 12 IEDVKNQEAREGATAVLQCELS--KAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGL 69
Query: 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
D EY C G + T A L + P
Sbjct: 70 SVADTGEYSCVC----GQERTSATLTVRALP 96
Score = 31.2 bits (69), Expect = 7.4, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 2091 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 2150
I ++N A + A QC ++ + W KGS + R+ + +G L I+ +
Sbjct: 12 IEDVKNQEAREGATAVLQCELS--KAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIHGL 69
Query: 2151 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
D EY C G + T A L + P
Sbjct: 70 SVADTGEYSCVC----GQERTSATLTVRALP 96
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L IG+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 27 ERYQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 86
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 87 NVIGLLDVF 95
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1077 RGSTAQFLELLLMFIPN-RVTSLIENHEYEFRVCAVNAAGQGPWSS 1121
+G + LL +P+ +T+L +YE +VCA A G+GP+SS
Sbjct: 43 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSS 88
>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine
Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex
With An Indirubin Ligand
Length = 429
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 811 VDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDI 870
V + V Y++L+ IG G+FG V + + K A K + ++ +EI I
Sbjct: 88 VQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAA-EEIRI 146
Query: 871 MNQLHHP------KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTL 920
+ L +I++ + F + + + FE+L + E + ++F G SL L
Sbjct: 147 LEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPL 201
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 11/139 (7%)
Query: 488 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 547
R + +I + +Q G P+ I + S PS R G +TL INSV D
Sbjct: 24 RASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPS-RFSGSGSGTDFTLSINSVESED 82
Query: 548 ADEYVCRAVNKGGV---KSTKAELI-IMTAPK-FNVPPRFRDTAYFDKGENVVVKIPFTG 602
+Y C+ N TK EL + AP F PP G VV +
Sbjct: 83 IADYYCQQNNNWPTTFGAGTKLELKRTVAAPSVFIFPPSDEQ---LKSGTASVVCLLNNF 139
Query: 603 YPK-PKITWYRDNEVIESG 620
YP+ K+ W DN ++SG
Sbjct: 140 YPREAKVQWKVDN-ALQSG 157
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + K+G A K + P + + +E+ ++ + H
Sbjct: 51 ERYQTLSPVGSGAYGSVCSSYDVKSGLKIAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 110
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 111 NVIGLLDVF 119
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 20 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 79
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 80 NVIGLLDVF 88
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 825 LEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHPKLINL 882
L EIG GA+G V++ + +G I A K I V +K+L+ +M P ++
Sbjct: 27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQF 86
Query: 883 HDAFEDDDEMVLIFEVL 899
+ A + + + E++
Sbjct: 87 YGALFREGDCWICMELM 103
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii Domain
Of Human Netrin Receptor Dcc
Length = 106
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 1238 LDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLET 1297
L +P S ++W+PP G P+ Y + E +TG + V +Y + GL+
Sbjct: 14 LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE--VDGLSYKLEGLKK 70
Query: 1298 NRQYRFRVRAENQYG 1312
+Y R A N+YG
Sbjct: 71 FTEYSLRFLAYNRYG 85
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 88
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 89 NVIGLLDVF 97
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1077 RGSTAQFLELLLMFIPN-RVTSLIENHEYEFRVCAVNAAGQGPWSS 1121
+G + LL +P+ +T+L +YE +VCA A G+GP+SS
Sbjct: 39 QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSS 84
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 34 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSKPFQSIIHAKRTYRELRLLKHMKHE 93
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 94 NVIGLLDVF 102
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 34 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 93
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 94 NVIGLLDVF 102
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 45 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 104
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 105 NVIGLLDVF 113
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 24 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 83
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 84 NVIGLLDVF 92
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 34 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 93
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 94 NVIGLLDVF 102
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 41 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 100
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 101 NVIGLLDVF 109
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 42 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 101
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 102 NVIGLLDVF 110
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 19 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 78
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 79 NVIGLLDVF 87
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 24 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 83
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 84 NVIGLLDVF 92
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 88
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 89 NVIGLLDVF 97
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 19 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 78
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 79 NVIGLLDVF 87
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 24 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 83
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 84 NVIGLLDVF 92
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 77
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 78 NVIGLLDVF 86
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 88
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 89 NVIGLLDVF 97
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 88
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 89 NVIGLLDVF 97
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 33 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 92
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 93 NVIGLLDVF 101
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 33 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 92
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 93 NVIGLLDVF 101
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 27 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 86
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 87 NVIGLLDVF 95
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 21 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 80
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 81 NVIGLLDVF 89
>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41
Length = 417
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 811 VDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDI 870
V + V Y++L+ IG G+FG V + + K A K + ++ +EI I
Sbjct: 88 VQVPHDHVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAA-EEIRI 146
Query: 871 MNQLHHP------KLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTL 920
+ L +I++ + F + + + FE+L + E + ++F G SL L
Sbjct: 147 LEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLSM-NLYELIKKNKFQGFSLPL 201
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 45 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 104
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 105 NVIGLLDVF 113
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 826 EEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDA 885
+++G G FG V K + P S ++E L E ++M L H KL+ LH A
Sbjct: 21 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFL--AEANVMKTLQHDKLVKLH-A 77
Query: 886 FEDDDEMVLIFEVLDRPHPPENLHADE 912
+ + +I E + + + L +DE
Sbjct: 78 VVTKEPIYIITEFMAKGSLLDFLKSDE 104
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 27 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 86
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 87 NVIGLLDVF 95
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 24 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 83
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 84 NVIGLLDVF 92
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 22 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 81
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 82 NVIGLLDVF 90
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 28 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 87
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 88 NVIGLLDVF 96
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 27 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 86
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 87 NVIGLLDVF 95
>pdb|2I9L|A Chain A, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|C Chain C, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|E Chain E, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|G Chain G, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVSMSCKSSQTLL---NSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVSMSCKSSQTLL---NSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 488 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 547
R + +I FQ I G P+ I + S PS R G +TL INSV D
Sbjct: 24 RASQSIGTSIHWFQQRINGSPRLLIEYASESISGIPS-RFSGSGSGTDFTLTINSVESED 82
Query: 548 ADEYVCRAVN 557
+Y C+ N
Sbjct: 83 IADYYCQQSN 92
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVD 2154
R + +I FQ I G P+ I + S PS R G +TL INSV D
Sbjct: 24 RASQSIGTSIHWFQQRINGSPRLLIEYASESISGIPS-RFSGSGSGTDFTLTINSVESED 82
Query: 2155 ADEYVCRAVN 2164
+Y C+ N
Sbjct: 83 IADYYCQQSN 92
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 28 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 87
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 88 NVIGLLDVF 96
>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|B Chain B, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|C Chain C, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
pdb|3ENM|D Chain D, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory
Dimer
Length = 316
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-LEKELIRKEIDI 870
D + + E+G GA+GVV + R +G I A K I + N E++ + ++DI
Sbjct: 34 DDLEPIXELGRGAYGVVEKXRHVPSGQIXAVKRIRATVNSQEQKRLLXDLDI 85
>pdb|3DUS|A Chain A, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUS|C Chain C, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 1
pdb|3DUU|A Chain A, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DUU|C Chain C, Crystal Structure Of Sag506-01, Orthorhombic, Twinned,
Crystal 2
pdb|3DV4|A Chain A, Crystal Structure Of Sag506-01, Tetragonal, Crystal 1
pdb|3DV6|A Chain A, Crystal Structure Of Sag506-01, Tetragonal, Crystal 2
Length = 112
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S + M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGERVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S + M+ K+ + + RN +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGERVTMSCKSSQSLFKSRNQ---KNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL IN V D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTINGVQAEDLAVYYCK 95
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAK--FIPVSHNLEKELIRKEIDIMN--Q 873
+ + Y I++++G G V+ + A K FIP E+ L R E ++ N Q
Sbjct: 9 INERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREK-EETLKRFEREVHNSSQ 67
Query: 874 LHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPE 906
L H ++++ D E+DD L+ E ++ P E
Sbjct: 68 LSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSE 100
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G L+L C A P + WL +G L + +T+ ++G YTC+
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFISNITEKNSGLYTCQ 444
Query: 165 AYNSVGFAHTSSRVKIGT 182
A NS H+ + VK T
Sbjct: 445 ANNSAS-GHSRTTVKTIT 461
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G L+L C A P + WL +G L + +T+ ++G YTC+
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGN-----------IQQHTQELFISNITEKNSGLYTCQ 444
Query: 1772 AYNSVGFAHTSSRVKIGT 1789
A NS H+ + VK T
Sbjct: 445 ANNSAS-GHSRTTVKTIT 461
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164
G+ L L C A P + W NG S L +T ++G YTC+
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQ 266
Query: 165 AYNS 168
A+NS
Sbjct: 267 AHNS 270
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 1712 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 1771
G+ L L C A P + W NG S L +T ++G YTC+
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQ 266
Query: 1772 AYNS 1775
A+NS
Sbjct: 267 AHNS 270
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPK 878
Y ++ E +G GAFGVV C+ + A K I E++ E+ +++++HP
Sbjct: 8 YKEIEVEEVVGRGAFGVV--CKAKWRAKDVAIKQI--ESESERKAFIVELRQLSRVNHPN 63
Query: 879 LINLHDA 885
++ L+ A
Sbjct: 64 IVKLYGA 70
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 30/88 (34%)
Query: 85 FVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 144
F P + ++ VP G+ P + +W NG E+ ++ G
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 145 VFRLHFNEVTDVDNGDYTCEAYNSVGFA 172
V L + D+G Y N G A
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGEA 90
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 30/88 (34%)
Query: 1692 FVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGG 1751
F P + ++ VP G+ P + +W NG E+ ++ G
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 1752 VFRLHFNEVTDVDNGDYTCEAYNSVGFA 1779
V L + D+G Y N G A
Sbjct: 63 VLTLEILDCHTDDSGTYRAVCTNYKGEA 90
>pdb|3BD3|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD3|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD4|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|A Chain A, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
pdb|3BD5|B Chain B, Crystal Structure Of Single Domain Vl Of An Anti-Dna
Binding Antibody 3d8 Scfv And Its Active Site Revealed
By Complex Structures Of A Small Molecule And Metals
Length = 112
Score = 31.6 bits (70), Expect = 6.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 7 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 62
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 63 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 94
Score = 31.6 bits (70), Expect = 6.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 7 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 62
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 63 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 94
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 93 FIVPLKDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 151
FI +K+ G LQCE + PV W + + G RY + G L
Sbjct: 11 FIEDVKNQEAREGATAVLQCELNSAAPV---EWRKGSETLRDGDRYSLRQDGTKCELQIR 67
Query: 152 EVTDVDNGDYTC 163
+ D G+Y+C
Sbjct: 68 GLAMADTGEYSC 79
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 1700 FIVPLKDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFN 1758
FI +K+ G LQCE + PV W + + G RY + G L
Sbjct: 11 FIEDVKNQEAREGATAVLQCELNSAAPV---EWRKGSETLRDGDRYSLRQDGTKCELQIR 67
Query: 1759 EVTDVDNGDYTC 1770
+ D G+Y+C
Sbjct: 68 GLAMADTGEYSC 79
Score = 30.8 bits (68), Expect = 9.2, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 484 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 543
I ++N A + A QC + + W KGS + R+ + +G L I +
Sbjct: 12 IEDVKNQEAREGATAVLQCELNSAAP--VEWRKGSETLRDGDRYSLRQDGTKCELQIRGL 69
Query: 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574
D EY C G + T A L + P
Sbjct: 70 AMADTGEYSCVC----GQERTSAMLTVRALP 96
Score = 30.8 bits (68), Expect = 9.2, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 2091 IVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSV 2150
I ++N A + A QC + + W KGS + R+ + +G L I +
Sbjct: 12 IEDVKNQEAREGATAVLQCELNSAAP--VEWRKGSETLRDGDRYSLRQDGTKCELQIRGL 69
Query: 2151 YGVDADEYVCRAVNKGGVKSTKAELIIMTAP 2181
D EY C G + T A L + P
Sbjct: 70 AMADTGEYSCVC----GQERTSAMLTVRALP 96
>pdb|43C9|A Chain A, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|C Chain C, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|E Chain E, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43C9|G Chain G, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody
pdb|43CA|A Chain A, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|C Chain C, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|E Chain E, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
pdb|43CA|G Chain G, Crystallographic Structure Of The Esterolytic And
Amidolytic 43c9 Antibody With Bound P-Nitrophenol
Length = 113
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + SV K M+ K+ + ++ + N +N+ A +Q PK + + +RE
Sbjct: 8 PSSLAMSVGQKVTMSCKSSQSLLNISNQ---KNYLAWYQQKPGQSPK-LLVYFASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D +Y C+
Sbjct: 64 VPDRFIGSGSGTDFTLTISSVQAEDQADYFCQ 95
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + SV K M+ K+ + ++ + N +N+ A +Q PK + + +RE
Sbjct: 8 PSSLAMSVGQKVTMSCKSSQSLLNISNQ---KNYLAWYQQKPGQSPK-LLVYFASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D +Y C+
Sbjct: 64 VPDRFIGSGSGTDFTLTISSVQAEDQADYFCQ 95
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 91 PDFIVPLKDLVVPLGKLLTLQCE---ATGTPVPKCRWLRN----------GREISSGARY 137
P I PLK + LG LT+ C+ TGTP+ W G ++ G R
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 138 RVETAGGVFR---LHFNEVTDVD-NGDYTCEAYNSVGFAHTSSRVK 179
+ L F+ VT D + D+ C +N++ F + VK
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 17/106 (16%)
Query: 1698 PDFIVPLKDLVVPLGKLLTLQCE---ATGTPVPKCRWLRN----------GREISSGARY 1744
P I PLK + LG LT+ C+ TGTP+ W G ++ G R
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 1745 RVETAGGVFR---LHFNEVTDVD-NGDYTCEAYNSVGFAHTSSRVK 1786
+ L F+ VT D + D+ C +N++ F + VK
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 31.2 bits (69), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 673 PQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGL 732
P+ V ++ DSL L W AP S + Y ++ + G+ R + +TGL
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSER--SYDLTGL 62
Query: 733 SPGHQYEFRVYAENVYGRSDP 753
PG +Y +Y RS+P
Sbjct: 63 KPGTEYTVSIYGVKGGHRSNP 83
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPK 878
Y ++ E +G GAFGVV C+ + A K I E++ E+ +++++HP
Sbjct: 7 YKEIEVEEVVGRGAFGVV--CKAKWRAKDVAIKQI--ESESERKAFIVELRQLSRVNHPN 62
Query: 879 LINLHDA 885
++ L+ A
Sbjct: 63 IVKLYGA 69
>pdb|1FN4|A Chain A, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
pdb|1FN4|C Chain C, Crystal Structure Of Fab198, An Efficient Protector Of
Acetylcholine Receptor Against Myasthenogenic Antibodies
Length = 211
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 8/132 (6%)
Query: 477 AAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTY 536
A+ + + + + I N+ A +Q + PK I + PS R G Y
Sbjct: 13 ASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPS-RFSGSGSGTDY 71
Query: 537 TLIINSVYGVDADEYVCRAVNKGGV--KSTKAELIIMTAPKFNV-PPRFRDTAYFDKGEN 593
TL I+S+ D Y C N G TK EL TAP ++ PP T G
Sbjct: 72 TLTISSLQPEDVATYFCYQYNNGYTFGAGTKLEL-KRTAPTVSIFPP---STEQLATGGA 127
Query: 594 VVVKIPFTGYPK 605
VV + YP+
Sbjct: 128 SVVCLMNNFYPR 139
>pdb|2ZUQ|B Chain B, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|E Chain E, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|B Chain B, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|E Chain E, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 239
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 28 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 83
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 84 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 115
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 28 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 83
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 84 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 115
>pdb|2GKI|A Chain A, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
pdb|2GKI|B Chain B, Heavy And Light Chain Variable Single Domains Of An
Anti-dna Binding Antibody Hydrolyze Both Double- And
Single-stranded Dnas Without Sequence Specificity
Length = 291
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 166 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 221
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 222 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 253
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 166 PSSLAVSAGEKVTMSCKSSQ---SLFNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 221
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 222 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 253
>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 240
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + SV K M+ ++ + L N +++ A FQ PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCRSSQ---SLLNTRTRKSYLAWFQQKPGQSPKMLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + SV K M+ ++ + L N +++ A FQ PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCRSSQ---SLLNTRTRKSYLAWFQQKPGQSPKMLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + SV K M+ K+ + ++ RN N+ + +Q PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCKSSQSLLYSRNQ---MNYLSWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQ 95
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + SV K M+ K+ + ++ RN N+ + +Q PK I W +RE
Sbjct: 8 PSSLAVSVGEKVTMSCKSSQSLLYSRNQ---MNYLSWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQ 95
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 814 KTSSVYDHYDIL--EEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEID 869
K V +H D++ E+IG G FG V R R + A K + +L+ + + +E
Sbjct: 106 KDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFL-QEAR 164
Query: 870 IMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
I+ Q HP ++ L + ++ E++
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQ 195
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMNQLHHP 877
+ Y L +G+GA+G V + KTG A K + P + + +E+ ++ + H
Sbjct: 28 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 87
Query: 878 KLINLHDAF 886
+I L D F
Sbjct: 88 NVIGLLDVF 96
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 30.8 bits (68), Expect = 8.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR-KEIDIMNQLHHPKLINLHDAF 886
+G G+FG VHR ++++TG A K + + E+ R +E+ L P+++ L+ A
Sbjct: 66 VGRGSFGEVHRMKDKQTGFQCAVKKVRL------EVFRVEELVACAGLSSPRIVPLYGAV 119
Query: 887 EDDDEMVLIFEVLD 900
+ + + E+L+
Sbjct: 120 REGPWVNIFMELLE 133
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAF- 886
IG G+FGVV + + ++ + K + +K +E+ IM + HP +++L F
Sbjct: 48 IGNGSFGVVFQAKLVESDEVAIKKVLQ-----DKRFKNRELQIMRIVKHPNVVDLKAFFY 102
Query: 887 ---EDDDEMVL 894
+ DE+ L
Sbjct: 103 SNGDKKDEVFL 113
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 814 KTSSVYDHYDIL--EEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEID 869
K V +H D++ E+IG G FG V R R + A K + +L+ + + +E
Sbjct: 106 KDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFL-QEAR 164
Query: 870 IMNQLHHPKLINLHDAFEDDDEMVLIFEVLD 900
I+ Q HP ++ L + ++ E++
Sbjct: 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQ 195
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 30.8 bits (68), Expect = 8.1, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 828 IGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIR-KEIDIMNQLHHPKLINLHDAF 886
+G G+FG VHR ++++TG A K + + E+ R +E+ L P+++ L+ A
Sbjct: 82 VGRGSFGEVHRMKDKQTGFQCAVKKVRL------EVFRVEELVACAGLSSPRIVPLYGAV 135
Query: 887 EDDDEMVLIFEVLD 900
+ + + E+L+
Sbjct: 136 REGPWVNIFMELLE 149
>pdb|3HZY|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 804 SKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEK 861
S++ V T +V Y L+ IG+GA G+V + G A K + P +
Sbjct: 6 SQFYSVQVADSTFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHA 65
Query: 862 ELIRKEIDIMNQLHHPKLINLHDAF------EDDDEMVLIFEVLD 900
+ +E+ ++ ++H +I+L + F E+ ++ L+ E++D
Sbjct: 66 KRAYRELVLLKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD 110
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + L N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQ---SLLNSRTRKNYLAWYQQKPGQSPKLLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGSGSGTDFTLTISSVQAEDLAVYYCK 95
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 729 ITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTK 763
+ +SP Y FRV A N G S PS SD TT+
Sbjct: 66 VVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFI--PVSHNLEKELIRKEIDIMN 872
T +V Y L+ IG+GA G+V + G A K + P + + +E+ ++
Sbjct: 19 TFTVLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLK 78
Query: 873 QLHHPKLINLHDAF------EDDDEMVLIFEVLD 900
++H +I+L + F E+ ++ L+ E++D
Sbjct: 79 CVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD 112
>pdb|1MHH|A Chain A, Antibody-Antigen Complex
pdb|1MHH|C Chain C, Antibody-Antigen Complex
Length = 220
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
>pdb|1N64|L Chain L, Crystal Structure Analysis Of The Immunodominant Antigenic
Site On Hepatitis C Virus Protein Bound To Mab 19d9d6
pdb|1NLB|L Chain L, Crystal Structure Of Anti-Hcv Monoclonal Antibody 19d9d6
pdb|1XCQ|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|E Chain E, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCQ|G Chain G, Complex Hcv Core-Fab 19d9d6-Protein L Mutant
(D55a,L57h,Y64w) In Space Group P21
pdb|1XCT|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a, L57h,
Y64w) In Space Group P21212
pdb|1XCT|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (D55a, L57h,
Y64w) In Space Group P21212
pdb|1XF5|A Chain A, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1XF5|C Chain C, Complex Hcv Core-Fab 19d9d6-Protein L Mutant (H74c,
Y64w)in Space Group P21212
pdb|1YMH|A Chain A, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl) Mutant
A66w
pdb|1YMH|C Chain C, Anti-hcv Fab 19d9d6 Complexed With Protein L (ppl) Mutant
A66w
Length = 220
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 463 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 522
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYW-ASTRESG 63
Query: 523 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 554
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 2070 PSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREIT 2129
PSS + S K M+ K+ + ++ N+ +N+ A +Q PK I W +RE
Sbjct: 8 PSSLAVSAGEKVTMSCKSSQSLL---NSRTRKNYLAWYQQKPGQSPKVLIYW-ASTRESG 63
Query: 2130 PSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161
R G +TL I+SV D Y C+
Sbjct: 64 VPDRFTGRGSGTDFTLTISSVQAEDQAVYYCK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,256,404
Number of Sequences: 62578
Number of extensions: 3268971
Number of successful extensions: 11952
Number of sequences better than 100.0: 826
Number of HSP's better than 100.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 428
Number of HSP's that attempted gapping in prelim test: 9152
Number of HSP's gapped (non-prelim): 2470
length of query: 2245
length of database: 14,973,337
effective HSP length: 114
effective length of query: 2131
effective length of database: 7,839,445
effective search space: 16705857295
effective search space used: 16705857295
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)