Query psy7042
Match_columns 2245
No_of_seqs 598 out of 6346
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 16:36:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.9E-75 6.2E-80 716.0 75.5 802 29-1133 71-919 (1051)
2 KOG3513|consensus 100.0 2.9E-73 6.2E-78 698.4 81.9 884 91-1374 40-965 (1051)
3 KOG4221|consensus 100.0 3.4E-70 7.4E-75 660.4 72.0 875 40-1317 91-1011(1381)
4 KOG4221|consensus 100.0 9E-67 1.9E-71 630.9 75.3 874 90-1372 41-963 (1381)
5 KOG4222|consensus 100.0 1.4E-51 3.1E-56 496.6 43.4 760 86-1121 27-837 (1281)
6 KOG4222|consensus 100.0 9.6E-45 2.1E-49 437.8 41.9 753 182-1318 30-837 (1281)
7 KOG4194|consensus 100.0 1.6E-27 3.4E-32 268.9 21.9 284 87-576 500-801 (873)
8 KOG4194|consensus 99.9 1.2E-26 2.6E-31 261.8 19.3 255 12-277 523-799 (873)
9 PHA02785 IL-beta-binding prote 99.9 3.2E-22 7E-27 236.0 26.5 158 100-267 36-205 (326)
10 PHA02785 IL-beta-binding prote 99.9 3.4E-21 7.3E-26 227.4 25.1 242 8-264 42-317 (326)
11 KOG3515|consensus 99.8 2.3E-19 4.9E-24 218.4 28.0 645 30-713 38-733 (741)
12 KOG3515|consensus 99.8 3.8E-18 8.3E-23 207.7 36.1 468 88-670 5-496 (741)
13 PHA02826 IL-1 receptor-like pr 99.8 6.2E-18 1.3E-22 184.8 18.6 158 97-262 29-211 (227)
14 PHA02826 IL-1 receptor-like pr 99.7 1.2E-15 2.6E-20 167.0 19.1 158 1705-1870 30-212 (227)
15 cd05762 Ig8_MLCK Eighth immuno 99.7 7.5E-16 1.6E-20 145.1 13.6 95 2088-2182 1-95 (98)
16 cd05762 Ig8_MLCK Eighth immuno 99.6 4.9E-15 1.1E-19 139.6 13.5 97 184-280 1-97 (98)
17 cd05851 Ig3_Contactin-1 Third 99.6 1.6E-14 3.5E-19 133.5 11.4 88 2087-2178 1-88 (88)
18 cd05747 Ig5_Titin_like M5, fif 99.5 6.1E-14 1.3E-18 131.9 12.4 90 2087-2176 3-92 (92)
19 cd05852 Ig5_Contactin-1 Fifth 99.5 2.9E-14 6.3E-19 125.4 9.4 73 2102-2177 1-73 (73)
20 cd05892 Ig_Myotilin_C C-termin 99.5 5.3E-14 1.2E-18 123.9 10.1 73 2105-2177 1-75 (75)
21 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1.2E-13 2.7E-18 126.5 12.6 82 2096-2177 4-86 (86)
22 cd05737 Ig_Myomesin_like_C C-t 99.5 1E-13 2.3E-18 130.1 12.3 83 2095-2177 9-92 (92)
23 PF07679 I-set: Immunoglobulin 99.5 1.6E-13 3.4E-18 129.9 13.6 90 2088-2177 1-90 (90)
24 cd05745 Ig3_Peroxidasin Third 99.5 5.2E-14 1.1E-18 125.8 9.1 74 2101-2177 1-74 (74)
25 KOG0196|consensus 99.5 3.9E-13 8.5E-18 159.7 18.4 194 900-1128 330-535 (996)
26 cd05851 Ig3_Contactin-1 Third 99.5 7.8E-14 1.7E-18 128.9 10.0 88 90-181 1-88 (88)
27 cd05893 Ig_Palladin_C C-termin 99.5 1.5E-13 3.3E-18 121.4 10.6 73 2105-2177 1-75 (75)
28 cd04975 Ig4_SCFR_like Fourth i 99.5 2E-13 4.4E-18 128.2 11.9 83 2096-2178 12-100 (101)
29 cd05747 Ig5_Titin_like M5, fif 99.5 2.7E-13 5.8E-18 127.5 12.0 91 89-179 2-92 (92)
30 cd05723 Ig4_Neogenin Fourth im 99.5 2.6E-13 5.7E-18 119.7 10.9 71 2104-2177 1-71 (71)
31 cd05870 Ig5_NCAM-2 Fifth immun 99.5 3.1E-13 6.7E-18 128.7 11.9 90 2087-2177 2-98 (98)
32 cd05866 Ig1_NCAM-2 First immun 99.5 5.5E-13 1.2E-17 122.7 12.9 87 2090-2177 3-91 (92)
33 PF07679 I-set: Immunoglobulin 99.5 4.5E-13 9.8E-18 126.8 12.2 90 91-180 1-90 (90)
34 cd04972 Ig_TrkABC_d4 Fourth do 99.5 5.7E-13 1.2E-17 124.7 12.4 85 2093-2177 6-90 (90)
35 cd05865 Ig1_NCAM-1 First immun 99.5 5.2E-13 1.1E-17 124.5 11.9 87 2091-2177 4-95 (96)
36 cd05728 Ig4_Contactin-2-like F 99.5 3.7E-13 8.1E-18 123.9 10.7 84 2090-2177 2-85 (85)
37 cd05730 Ig3_NCAM-1_like Third 99.4 5.7E-13 1.2E-17 126.7 12.0 83 2095-2179 11-94 (95)
38 cd05748 Ig_Titin_like Immunogl 99.4 6.4E-13 1.4E-17 119.2 11.5 74 2104-2177 1-74 (74)
39 cd05869 Ig5_NCAM-1 Fifth immun 99.4 8E-13 1.7E-17 125.6 12.8 91 2087-2177 2-97 (97)
40 cd04968 Ig3_Contactin_like Thi 99.4 9.3E-13 2E-17 122.9 12.3 88 2087-2178 1-88 (88)
41 cd05859 Ig4_PDGFR-alpha Fourth 99.4 6.7E-13 1.4E-17 125.2 11.4 83 2096-2178 12-100 (101)
42 cd05737 Ig_Myomesin_like_C C-t 99.4 9.1E-13 2E-17 123.8 12.1 85 96-180 7-92 (92)
43 cd05735 Ig8_DSCAM Eight immuno 99.4 1.1E-12 2.5E-17 121.0 12.4 81 2102-2182 1-86 (88)
44 cd05863 Ig2_VEGFR-3 Second imm 99.4 5.3E-13 1.2E-17 113.5 9.3 66 2105-2178 1-66 (67)
45 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.2E-12 2.6E-17 120.0 12.2 82 99-180 4-86 (86)
46 cd05744 Ig_Myotilin_C_like Imm 99.4 7.5E-13 1.6E-17 117.9 10.5 73 2105-2177 1-75 (75)
47 cd05892 Ig_Myotilin_C C-termin 99.4 7E-13 1.5E-17 116.8 9.9 73 108-180 1-75 (75)
48 cd05852 Ig5_Contactin-1 Fifth 99.4 5E-13 1.1E-17 117.6 8.8 73 105-180 1-73 (73)
49 cd04969 Ig5_Contactin_like Fif 99.4 6.6E-13 1.4E-17 118.4 9.6 73 2102-2177 1-73 (73)
50 cd05868 Ig4_NrCAM Fourth immun 99.4 1.1E-12 2.4E-17 117.4 10.7 75 2102-2178 1-76 (76)
51 cd05743 Ig_Perlecan_D2_like Im 99.4 1.3E-12 2.8E-17 118.1 11.3 76 2102-2177 1-76 (78)
52 cd05867 Ig4_L1-CAM_like Fourth 99.4 1.5E-12 3.2E-17 117.2 11.4 72 2102-2177 1-75 (76)
53 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2E-12 4.2E-17 121.1 12.6 88 93-180 3-90 (90)
54 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.3E-12 2.9E-17 124.8 11.6 90 2087-2177 2-96 (96)
55 cd05746 Ig4_Peroxidasin Fourth 99.4 7.2E-13 1.6E-17 116.3 8.3 69 2105-2176 1-69 (69)
56 cd05854 Ig6_Contactin-2 Sixth 99.4 2.1E-12 4.6E-17 118.1 11.7 79 2103-2181 1-85 (85)
57 cd05893 Ig_Palladin_C C-termin 99.4 1.5E-12 3.2E-17 115.2 9.9 73 108-180 1-75 (75)
58 cd04975 Ig4_SCFR_like Fourth i 99.4 2.2E-12 4.9E-17 121.2 11.7 84 98-181 11-100 (101)
59 cd05745 Ig3_Peroxidasin Third 99.4 1.1E-12 2.4E-17 117.2 9.2 74 104-180 1-74 (74)
60 cd05848 Ig1_Contactin-5 First 99.4 2.6E-12 5.6E-17 120.4 12.0 85 2088-2175 2-92 (94)
61 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.9E-12 6.3E-17 121.8 12.0 91 90-180 2-97 (97)
62 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.5E-12 5.4E-17 122.6 11.5 90 90-180 2-98 (98)
63 cd05728 Ig4_Contactin-2-like F 99.4 2E-12 4.4E-17 119.1 10.4 84 93-180 2-85 (85)
64 cd05891 Ig_M-protein_C C-termi 99.4 4.1E-12 8.9E-17 118.7 12.1 83 2095-2177 9-92 (92)
65 cd05866 Ig1_NCAM-2 First immun 99.4 4.3E-12 9.3E-17 116.9 11.8 86 94-180 4-91 (92)
66 cd05735 Ig8_DSCAM Eight immuno 99.4 5.1E-12 1.1E-16 116.7 12.0 83 198-280 1-88 (88)
67 cd05857 Ig2_FGFR Second immuno 99.4 4E-12 8.6E-17 118.2 11.1 81 2097-2177 4-85 (85)
68 cd05853 Ig6_Contactin-4 Sixth 99.4 2.9E-12 6.2E-17 114.7 9.2 79 2103-2181 1-85 (85)
69 cd05876 Ig3_L1-CAM Third immun 99.4 2.8E-12 6E-17 113.3 9.0 70 2105-2177 1-70 (71)
70 cd05849 Ig1_Contactin-1 First 99.4 5.4E-12 1.2E-16 117.4 11.3 85 2088-2176 2-92 (93)
71 cd05864 Ig2_VEGFR-2 Second imm 99.4 3.9E-12 8.4E-17 110.2 9.5 69 2105-2178 1-69 (70)
72 cd05740 Ig_CEACAM_D4 Fourth im 99.3 5E-12 1.1E-16 117.1 10.8 86 2088-2177 2-90 (91)
73 cd05723 Ig4_Neogenin Fourth im 99.3 4.9E-12 1.1E-16 111.7 10.2 71 107-180 1-71 (71)
74 cd05850 Ig1_Contactin-2 First 99.3 8.7E-12 1.9E-16 117.1 12.5 84 2088-2175 2-92 (94)
75 cd05865 Ig1_NCAM-1 First immun 99.3 6.1E-12 1.3E-16 117.4 11.3 86 95-180 5-95 (96)
76 cd04978 Ig4_L1-NrCAM_like Four 99.3 4E-12 8.6E-17 115.3 9.8 74 2102-2177 1-75 (76)
77 cd04968 Ig3_Contactin_like Thi 99.3 7.4E-12 1.6E-16 116.8 11.7 88 90-181 1-88 (88)
78 cd05760 Ig2_PTK7 Second immuno 99.3 5.3E-12 1.2E-16 113.5 10.1 71 2105-2177 1-74 (77)
79 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 5.8E-12 1.3E-16 109.5 10.0 69 2102-2176 1-69 (69)
80 cd05730 Ig3_NCAM-1_like Third 99.3 6.7E-12 1.4E-16 119.3 11.4 91 90-182 1-94 (95)
81 cd05855 Ig_TrkB_d5 Fifth domai 99.3 5.5E-12 1.2E-16 111.0 9.8 70 2107-2176 3-77 (79)
82 cd07693 Ig1_Robo First immunog 99.3 7.2E-12 1.6E-16 121.8 11.7 91 2087-2177 1-99 (100)
83 cd05732 Ig5_NCAM-1_like Fifth 99.3 8.1E-12 1.8E-16 119.5 11.6 90 90-180 2-96 (96)
84 cd05773 Ig8_hNephrin_like Eigh 99.3 1.1E-11 2.4E-16 119.7 12.4 81 2101-2181 22-108 (109)
85 cd04976 Ig2_VEGFR Second immun 99.3 7E-12 1.5E-16 110.3 10.0 70 2105-2178 1-70 (71)
86 cd05726 Ig4_Robo Fhird immunog 99.3 5.3E-12 1.1E-16 118.1 9.8 77 2102-2181 1-85 (90)
87 cd05748 Ig_Titin_like Immunogl 99.3 9E-12 1.9E-16 111.8 10.8 74 107-180 1-74 (74)
88 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 9.5E-12 2E-16 111.9 10.8 71 2107-2177 3-80 (81)
89 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 6.1E-12 1.3E-16 112.2 9.3 70 2105-2177 1-73 (74)
90 cd05744 Ig_Myotilin_C_like Imm 99.3 1E-11 2.2E-16 110.7 10.3 73 108-180 1-75 (75)
91 cd05891 Ig_M-protein_C C-termi 99.3 1.4E-11 3E-16 115.1 11.5 85 96-180 7-92 (92)
92 cd05859 Ig4_PDGFR-alpha Fourth 99.3 1.1E-11 2.5E-16 116.9 10.9 83 99-181 12-100 (101)
93 cd05763 Ig_1 Subgroup of the i 99.3 7.5E-12 1.6E-16 112.5 9.0 71 2105-2177 1-74 (75)
94 cd05848 Ig1_Contactin-5 First 99.3 1.5E-11 3.2E-16 115.3 11.2 86 91-178 2-92 (94)
95 cd05749 Ig2_Tyro3_like Second 99.3 9.9E-12 2.1E-16 111.2 9.5 77 2091-2175 2-80 (81)
96 cd05725 Ig3_Robo Third immunog 99.3 7.4E-12 1.6E-16 110.3 8.6 69 2105-2177 1-69 (69)
97 cd05854 Ig6_Contactin-2 Sixth 99.3 1.5E-11 3.2E-16 112.5 10.7 79 106-184 1-85 (85)
98 cd05743 Ig_Perlecan_D2_like Im 99.3 1.3E-11 2.9E-16 111.5 10.1 75 105-179 1-75 (78)
99 cd05863 Ig2_VEGFR-3 Second imm 99.3 9.1E-12 2E-16 106.0 8.3 66 201-274 1-66 (67)
100 cd05773 Ig8_hNephrin_like Eigh 99.3 3E-11 6.4E-16 116.7 12.9 96 89-184 3-108 (109)
101 cd04970 Ig6_Contactin_like Six 99.3 1.6E-11 3.5E-16 113.5 10.6 79 2103-2181 1-85 (85)
102 cd05764 Ig_2 Subgroup of the i 99.3 1.3E-11 2.9E-16 110.8 9.8 73 2102-2177 1-74 (74)
103 cd05868 Ig4_NrCAM Fourth immun 99.3 1.2E-11 2.5E-16 110.8 9.1 74 105-180 1-75 (76)
104 KOG0196|consensus 99.3 1.1E-10 2.4E-15 139.4 19.8 194 667-997 329-534 (996)
105 cd05867 Ig4_L1-CAM_like Fourth 99.3 1.9E-11 4.1E-16 110.0 10.4 72 105-180 1-75 (76)
106 cd04973 Ig1_FGFR First immunog 99.3 1.5E-11 3.1E-16 111.3 9.6 78 2095-2177 2-79 (79)
107 cd04969 Ig5_Contactin_like Fif 99.3 1.3E-11 2.7E-16 110.2 9.1 73 105-180 1-73 (73)
108 cd05850 Ig1_Contactin-2 First 99.3 2.7E-11 5.9E-16 113.7 11.6 85 91-179 2-93 (94)
109 TIGR00864 PCC polycystin catio 99.3 0.00011 2.4E-09 103.7 129.8 199 1660-1884 1922-2128(2740)
110 cd05736 Ig2_Follistatin_like S 99.3 1.8E-11 3.8E-16 110.6 9.9 75 2105-2179 1-75 (76)
111 cd05758 Ig5_KIRREL3-like Fifth 99.3 3.3E-11 7.3E-16 114.8 12.3 88 2087-2175 2-97 (98)
112 cd04977 Ig1_NCAM-1_like First 99.3 4E-11 8.6E-16 112.1 12.5 87 2090-2177 3-92 (92)
113 cd05722 Ig1_Neogenin First imm 99.3 1.9E-11 4.1E-16 116.0 10.2 85 2090-2177 2-95 (95)
114 cd07693 Ig1_Robo First immunog 99.3 2.6E-11 5.6E-16 117.9 11.5 91 90-180 1-99 (100)
115 cd05724 Ig2_Robo Second immuno 99.3 1.9E-11 4.1E-16 114.2 9.9 81 2094-2177 3-86 (86)
116 cd05740 Ig_CEACAM_D4 Fourth im 99.3 2.6E-11 5.7E-16 112.3 10.5 87 90-180 1-90 (91)
117 cd05853 Ig6_Contactin-4 Sixth 99.3 2.4E-11 5.3E-16 108.8 9.5 79 199-277 1-85 (85)
118 cd05857 Ig2_FGFR Second immuno 99.3 3.4E-11 7.4E-16 111.9 10.7 81 100-180 4-85 (85)
119 cd05849 Ig1_Contactin-1 First 99.2 3.2E-11 7E-16 112.3 10.3 86 90-179 1-92 (93)
120 cd04974 Ig3_FGFR Third immunog 99.2 1.6E-11 3.4E-16 114.5 8.0 76 2102-2177 1-89 (90)
121 cd05731 Ig3_L1-CAM_like Third 99.2 2.3E-11 5E-16 108.6 8.7 70 2105-2177 1-70 (71)
122 cd05858 Ig3_FGFR-2 Third immun 99.2 2.9E-11 6.3E-16 113.0 9.7 76 2102-2177 1-89 (90)
123 cd04973 Ig1_FGFR First immunog 99.2 3.3E-11 7.1E-16 109.0 9.2 79 97-180 1-79 (79)
124 cd05856 Ig2_FGFRL1-like Second 99.2 3.5E-11 7.7E-16 111.4 9.7 78 2098-2177 5-82 (82)
125 cd05746 Ig4_Peroxidasin Fourth 99.2 2E-11 4.3E-16 107.2 7.2 69 108-179 1-69 (69)
126 cd05855 Ig_TrkB_d5 Fifth domai 99.2 5.2E-11 1.1E-15 104.9 9.7 70 110-179 3-77 (79)
127 cd04978 Ig4_L1-NrCAM_like Four 99.2 5.5E-11 1.2E-15 107.8 9.5 76 198-274 1-76 (76)
128 cd07702 Ig2_VEGFR-1 Second imm 99.2 6.1E-11 1.3E-15 102.6 9.2 68 2105-2176 1-69 (72)
129 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.4E-10 3.1E-15 119.2 13.6 116 147-262 2-131 (139)
130 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 6.1E-11 1.3E-15 103.2 9.2 69 105-179 1-69 (69)
131 cd05749 Ig2_Tyro3_like Second 99.2 5.4E-11 1.2E-15 106.5 8.9 78 93-178 1-80 (81)
132 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1.6E-10 3.4E-15 106.5 11.8 88 2087-2175 2-97 (98)
133 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.3E-10 2.9E-15 110.7 11.8 88 90-178 2-97 (98)
134 cd04977 Ig1_NCAM-1_like First 99.2 1.5E-10 3.2E-15 108.2 11.7 86 94-180 4-92 (92)
135 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 9.1E-11 2E-15 105.5 9.8 70 110-179 3-79 (81)
136 cd05733 Ig6_L1-CAM_like Sixth 99.2 4.3E-11 9.3E-16 107.6 7.7 71 2105-2175 1-76 (77)
137 cd05864 Ig2_VEGFR-2 Second imm 99.2 5.5E-11 1.2E-15 103.0 8.1 69 201-274 1-69 (70)
138 cd05750 Ig_Pro_neuregulin Immu 99.2 6.6E-11 1.4E-15 107.0 8.8 70 2105-2174 1-74 (75)
139 cd04970 Ig6_Contactin_like Six 99.2 1.2E-10 2.7E-15 107.6 10.7 79 199-277 1-85 (85)
140 cd05876 Ig3_L1-CAM Third immun 99.2 6.9E-11 1.5E-15 104.4 8.2 71 108-181 1-71 (71)
141 cd05760 Ig2_PTK7 Second immuno 99.2 9.8E-11 2.1E-15 105.3 9.3 71 108-180 1-74 (77)
142 cd04976 Ig2_VEGFR Second immun 99.2 7.3E-11 1.6E-15 103.8 8.0 69 108-180 1-69 (71)
143 cd05765 Ig_3 Subgroup of the i 99.2 8E-11 1.7E-15 108.4 8.6 73 2102-2177 1-81 (81)
144 cd05874 Ig6_NrCAM Sixth immuno 99.2 9.7E-11 2.1E-15 104.7 8.8 69 2105-2175 1-76 (77)
145 cd05726 Ig4_Robo Fhird immunog 99.2 9.6E-11 2.1E-15 109.7 8.9 76 105-183 1-84 (90)
146 cd05722 Ig1_Neogenin First imm 99.2 1.5E-10 3.3E-15 109.7 10.4 85 93-180 2-95 (95)
147 cd05875 Ig6_hNeurofascin_like 99.2 1.5E-10 3.2E-15 103.6 9.5 69 2105-2175 1-76 (77)
148 cd05734 Ig7_DSCAM Seventh immu 99.2 1.2E-10 2.6E-15 105.9 8.7 70 2105-2177 1-79 (79)
149 cd05724 Ig2_Robo Second immuno 99.1 1.8E-10 3.9E-15 107.6 10.0 82 96-180 2-86 (86)
150 cd05763 Ig_1 Subgroup of the i 99.1 1.2E-10 2.6E-15 104.7 8.4 74 201-274 1-75 (75)
151 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 1.4E-10 3E-15 103.5 8.7 71 108-181 1-74 (74)
152 cd04967 Ig1_Contactin First Ig 99.1 2.9E-10 6.2E-15 106.7 11.2 82 2088-2171 2-87 (91)
153 cd05764 Ig_2 Subgroup of the i 99.1 1.9E-10 4.1E-15 103.3 9.5 73 105-180 1-74 (74)
154 cd05756 Ig1_IL1R_like First im 99.1 1.3E-10 2.8E-15 108.2 8.3 81 2095-2177 7-94 (94)
155 cd05725 Ig3_Robo Third immunog 99.1 1.5E-10 3.2E-15 102.1 7.9 69 108-180 1-69 (69)
156 cd04974 Ig3_FGFR Third immunog 99.1 1.2E-10 2.5E-15 108.7 7.7 77 105-181 1-90 (90)
157 cd05736 Ig2_Follistatin_like S 99.1 2.6E-10 5.7E-15 102.9 9.3 74 201-274 1-74 (76)
158 cd05858 Ig3_FGFR-2 Third immun 99.1 3E-10 6.5E-15 106.2 10.0 76 198-273 1-89 (90)
159 cd05856 Ig2_FGFRL1-like Second 99.1 2.5E-10 5.3E-15 105.8 9.2 79 100-180 4-82 (82)
160 cd05752 Ig1_FcgammaR_like Frst 99.1 1.5E-10 3.2E-15 103.1 7.2 77 2088-2177 1-78 (78)
161 cd05752 Ig1_FcgammaR_like Frst 99.1 2.4E-10 5.2E-15 101.8 7.7 77 184-273 1-78 (78)
162 cd04967 Ig1_Contactin First Ig 99.1 6.1E-10 1.3E-14 104.5 10.3 82 91-174 2-87 (91)
163 cd05895 Ig_Pro_neuregulin-1 Im 99.1 5.2E-10 1.1E-14 100.9 9.2 70 2105-2174 1-75 (76)
164 cd05731 Ig3_L1-CAM_like Third 99.1 4.4E-10 9.5E-15 100.3 8.0 71 108-181 1-71 (71)
165 cd05756 Ig1_IL1R_like First im 99.1 3.7E-10 8E-15 105.2 7.7 81 191-273 7-94 (94)
166 KOG0613|consensus 99.1 2.5E-09 5.4E-14 136.8 17.6 260 1706-1971 343-615 (1205)
167 cd05742 Ig1_VEGFR_like First i 99.0 6.2E-10 1.4E-14 102.6 8.9 76 2102-2177 1-83 (84)
168 cd05750 Ig_Pro_neuregulin Immu 99.0 4.8E-10 1E-14 101.4 7.8 70 108-177 1-74 (75)
169 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1.2E-09 2.6E-14 99.9 10.2 77 2102-2178 1-83 (84)
170 cd05733 Ig6_L1-CAM_like Sixth 99.0 7.2E-10 1.6E-14 99.7 8.0 67 201-267 1-71 (77)
171 cd05765 Ig_3 Subgroup of the i 99.0 1E-09 2.2E-14 101.1 8.8 76 198-273 1-81 (81)
172 cd05873 Ig_Sema4D_like Immunog 99.0 2.2E-09 4.7E-14 96.7 10.4 68 2094-2166 3-71 (87)
173 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.2E-09 2.6E-14 94.6 8.3 63 108-174 1-64 (72)
174 cd07701 Ig1_Necl-3 First (N-te 99.0 2.2E-09 4.8E-14 100.5 10.6 83 2094-2177 4-95 (95)
175 cd05873 Ig_Sema4D_like Immunog 99.0 1.8E-09 3.8E-14 97.2 9.3 69 96-169 2-71 (87)
176 cd05754 Ig3_Perlecan_like Thir 99.0 1.3E-09 2.7E-14 101.0 8.7 76 2094-2175 8-84 (85)
177 cd05874 Ig6_NrCAM Sixth immuno 99.0 1.5E-09 3.3E-14 97.1 8.7 67 201-267 1-71 (77)
178 cd05875 Ig6_hNeurofascin_like 99.0 1.9E-09 4.1E-14 96.5 9.2 65 201-267 1-71 (77)
179 cd05729 Ig2_FGFR_like Second i 99.0 3.2E-09 7E-14 99.2 11.3 80 2098-2177 5-85 (85)
180 cd05898 Ig5_KIRREL3 Fifth immu 99.0 4E-09 8.7E-14 97.4 11.2 88 90-178 2-97 (98)
181 cd04979 Ig_Semaphorin_C Immuno 98.9 2.8E-09 6E-14 99.7 9.0 82 2095-2179 4-88 (89)
182 cd05742 Ig1_VEGFR_like First i 98.9 2.2E-09 4.7E-14 99.1 8.2 76 105-180 1-83 (84)
183 cd05771 IgC_Tapasin_R Tapasin- 98.9 9.7E-09 2.1E-13 105.6 13.9 116 1754-1869 2-131 (139)
184 cd07701 Ig1_Necl-3 First (N-te 98.9 4.1E-09 8.9E-14 98.7 10.1 83 97-180 4-95 (95)
185 cd05895 Ig_Pro_neuregulin-1 Im 98.9 2.9E-09 6.4E-14 96.0 8.7 70 108-177 1-75 (76)
186 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 2.8E-09 6.1E-14 97.4 8.5 77 105-181 1-83 (84)
187 cd05882 Ig1_Necl-1 First (N-te 98.9 6.7E-09 1.5E-13 96.5 11.0 82 98-180 5-95 (95)
188 cd05882 Ig1_Necl-1 First (N-te 98.9 8.4E-09 1.8E-13 95.9 11.4 81 2095-2176 5-94 (95)
189 cd05734 Ig7_DSCAM Seventh immu 98.9 3.1E-09 6.8E-14 96.6 8.1 70 108-180 1-79 (79)
190 cd05757 Ig2_IL1R_like Second i 98.9 5.4E-09 1.2E-13 96.5 8.7 77 2097-2177 5-86 (92)
191 cd05754 Ig3_Perlecan_like Thir 98.9 7.3E-09 1.6E-13 95.9 9.2 79 187-271 5-84 (85)
192 cd04979 Ig_Semaphorin_C Immuno 98.9 7E-09 1.5E-13 96.9 9.1 82 96-182 2-88 (89)
193 cd05729 Ig2_FGFR_like Second i 98.9 1.4E-08 3.1E-13 94.8 11.0 81 100-180 4-85 (85)
194 TIGR00864 PCC polycystin catio 98.9 0.004 8.7E-08 88.8 124.9 225 32-274 926-1170(2740)
195 cd05753 Ig2_FcgammaR_like Seco 98.8 8.8E-09 1.9E-13 93.7 7.8 72 2098-2177 10-83 (83)
196 KOG4258|consensus 98.8 1.3E-07 2.7E-12 114.4 19.3 140 907-1047 493-655 (1025)
197 cd05871 Ig_Semaphorin_classIII 98.8 2.5E-08 5.4E-13 92.3 9.8 78 2097-2179 6-90 (91)
198 cd07690 Ig1_CD4 First immunogl 98.8 1.3E-08 2.8E-13 93.6 7.7 73 2098-2170 3-92 (94)
199 cd05727 Ig2_Contactin-2-like S 98.8 1.2E-08 2.5E-13 93.2 7.0 73 98-172 11-86 (96)
200 cd05727 Ig2_Contactin-2-like S 98.8 9.8E-09 2.1E-13 93.7 6.5 71 2096-2169 12-86 (96)
201 cd05757 Ig2_IL1R_like Second i 98.8 1.7E-08 3.8E-13 93.1 8.0 78 192-273 4-86 (92)
202 cd05845 Ig2_L1-CAM_like Second 98.8 1.1E-08 2.4E-13 93.1 6.2 73 2094-2169 10-85 (95)
203 KOG4258|consensus 98.8 1.2E-07 2.6E-12 114.6 16.6 136 959-1127 783-922 (1025)
204 cd05753 Ig2_FcgammaR_like Seco 98.8 1.9E-08 4.1E-13 91.5 7.3 73 99-179 8-82 (83)
205 cd05860 Ig4_SCFR Fourth immuno 98.7 1E-07 2.2E-12 86.6 11.5 83 2096-2178 12-100 (101)
206 KOG0613|consensus 98.7 9.4E-07 2E-11 114.0 24.4 593 586-1357 50-654 (1205)
207 PF13895 Ig_2: Immunoglobulin 98.7 4.2E-08 9.1E-13 90.5 9.4 78 2088-2177 2-80 (80)
208 cd05717 Ig1_Necl-1-3_like Firs 98.7 5.5E-08 1.2E-12 92.3 10.0 82 98-180 5-95 (95)
209 cd05845 Ig2_L1-CAM_like Second 98.7 2.6E-08 5.6E-13 90.8 6.9 77 91-170 3-83 (95)
210 cd07690 Ig1_CD4 First immunogl 98.7 3.1E-08 6.8E-13 91.1 7.5 72 100-171 2-90 (94)
211 cd05862 Ig1_VEGFR First immuno 98.7 6.6E-08 1.4E-12 88.7 9.3 78 2102-2179 1-86 (86)
212 cd05717 Ig1_Necl-1-3_like Firs 98.7 8.1E-08 1.8E-12 91.1 10.1 82 2095-2177 5-95 (95)
213 smart00410 IG_like Immunoglobu 98.7 2E-07 4.3E-12 87.8 12.4 82 2096-2177 3-85 (86)
214 smart00409 IG Immunoglobulin. 98.7 2E-07 4.3E-12 87.8 12.4 82 2096-2177 3-85 (86)
215 PF13895 Ig_2: Immunoglobulin 98.7 7.6E-08 1.6E-12 88.8 8.9 79 90-180 1-80 (80)
216 cd05897 Ig2_IL1R2_like Second 98.7 5.5E-08 1.2E-12 89.1 7.7 79 2097-2177 5-93 (95)
217 smart00408 IGc2 Immunoglobulin 98.7 7.2E-08 1.6E-12 84.1 8.1 63 2101-2167 1-63 (63)
218 PF00041 fn3: Fibronectin type 98.7 9.5E-08 2.1E-12 89.4 9.0 84 903-987 1-85 (85)
219 smart00409 IG Immunoglobulin. 98.7 3.2E-07 7E-12 86.3 12.7 83 98-180 2-85 (86)
220 smart00410 IG_like Immunoglobu 98.7 3.2E-07 7E-12 86.3 12.7 83 98-180 2-85 (86)
221 cd05871 Ig_Semaphorin_classIII 98.6 1.1E-07 2.4E-12 88.0 9.2 79 99-182 5-90 (91)
222 PHA03376 BARF1; Provisional 98.6 2.1E-07 4.5E-12 91.6 11.1 124 99-222 20-163 (221)
223 cd05881 Ig1_Necl-2 First (N-te 98.6 3.9E-07 8.5E-12 83.8 10.8 70 98-167 5-83 (95)
224 cd05862 Ig1_VEGFR First immuno 98.6 1.6E-07 3.4E-12 86.2 8.3 78 105-182 1-86 (86)
225 cd05885 Ig2_Necl-4 Second immu 98.6 2E-07 4.3E-12 81.8 8.2 71 2104-2176 1-79 (80)
226 PF00041 fn3: Fibronectin type 98.6 1.3E-07 2.9E-12 88.3 7.7 83 1234-1317 2-85 (85)
227 cd05872 Ig_Sema4B_like Immunog 98.6 2.4E-07 5.3E-12 82.7 8.4 73 98-176 4-76 (85)
228 smart00408 IGc2 Immunoglobulin 98.6 2.4E-07 5.2E-12 80.7 8.2 63 104-170 1-63 (63)
229 cd05872 Ig_Sema4B_like Immunog 98.5 3E-07 6.5E-12 82.1 8.3 77 2095-2177 4-80 (85)
230 cd05881 Ig1_Necl-2 First (N-te 98.5 8.3E-07 1.8E-11 81.6 11.2 70 2095-2164 5-83 (95)
231 KOG4802|consensus 98.5 1.6E-06 3.4E-11 95.7 15.2 190 899-1124 142-347 (516)
232 PF00047 ig: Immunoglobulin do 98.5 2.8E-07 6E-12 80.0 7.5 61 105-165 1-64 (64)
233 cd05885 Ig2_Necl-4 Second immu 98.5 3.1E-07 6.8E-12 80.6 7.1 64 200-264 1-68 (80)
234 cd05897 Ig2_IL1R2_like Second 98.5 3.4E-07 7.4E-12 84.0 7.5 81 192-273 4-93 (95)
235 PF00047 ig: Immunoglobulin do 98.5 2.6E-07 5.6E-12 80.2 6.4 61 2102-2162 1-64 (64)
236 cd05860 Ig4_SCFR Fourth immuno 98.5 1.5E-06 3.4E-11 79.1 10.8 83 99-181 12-100 (101)
237 cd05759 Ig2_KIRREL3-like Secon 98.4 1.1E-06 2.4E-11 80.5 9.1 73 2104-2176 1-81 (82)
238 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.3E-06 2.8E-11 79.8 9.0 80 99-180 9-104 (104)
239 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.1E-06 2.3E-11 80.4 8.4 79 2097-2177 10-104 (104)
240 cd05751 Ig1_LILRB1_like First 98.4 6.1E-07 1.3E-11 83.7 7.2 74 2087-2165 2-75 (91)
241 PHA03376 BARF1; Provisional 98.4 2.6E-06 5.5E-11 84.2 11.4 123 1706-1828 20-162 (221)
242 cd05751 Ig1_LILRB1_like First 98.3 1.4E-06 3.1E-11 81.3 6.9 74 90-168 2-75 (91)
243 cd04983 IgV_TCR_alpha_like Imm 98.3 2.8E-06 6.1E-11 83.5 8.7 76 94-169 2-93 (109)
244 PF13927 Ig_3: Immunoglobulin 98.2 1.4E-06 3E-11 79.1 5.6 74 2087-2164 1-75 (75)
245 cd05759 Ig2_KIRREL3-like Secon 98.2 5.7E-06 1.2E-10 75.8 9.6 73 107-179 1-81 (82)
246 cd05774 Ig_CEACAM_D1 First imm 98.2 4.4E-06 9.5E-11 79.0 8.9 78 2095-2177 6-105 (105)
247 cd04983 IgV_TCR_alpha_like Imm 98.2 4.8E-06 1E-10 81.9 8.9 75 2093-2167 4-94 (109)
248 cd05899 IgV_TCR_beta Immunoglo 98.2 5.4E-06 1.2E-10 81.2 8.1 74 95-169 3-95 (110)
249 PF13927 Ig_3: Immunoglobulin 98.2 2.9E-06 6.2E-11 77.0 5.8 74 90-167 1-75 (75)
250 cd05713 Ig_MOG_like Immunoglob 98.2 1.1E-05 2.4E-10 77.6 10.0 76 2102-2177 1-99 (100)
251 cd05774 Ig_CEACAM_D1 First imm 98.1 6.5E-06 1.4E-10 77.9 7.9 82 96-180 4-105 (105)
252 cd04980 IgV_L_kappa Immunoglob 98.1 7.9E-06 1.7E-10 79.4 8.5 76 93-168 3-93 (106)
253 cd05899 IgV_TCR_beta Immunoglo 98.1 7.7E-06 1.7E-10 80.2 8.2 73 2093-2166 4-95 (110)
254 cd05877 Ig_LP_like Immunoglobu 98.1 1.4E-05 3E-10 77.9 9.7 78 2101-2178 1-103 (106)
255 cd05883 Ig2_Necl-2 Second immu 98.1 1.8E-05 3.9E-10 69.9 9.1 75 200-274 1-80 (82)
256 cd05714 Ig_CSPGs_LP Immunoglob 98.1 2.2E-05 4.7E-10 76.4 10.5 79 2101-2179 1-104 (106)
257 cd05900 Ig_Aggrecan Immunoglob 98.1 1.8E-05 3.9E-10 76.0 9.5 78 2101-2178 1-109 (112)
258 cd05900 Ig_Aggrecan Immunoglob 98.1 1.8E-05 3.8E-10 76.0 9.1 78 104-181 1-109 (112)
259 cd00099 IgV Immunoglobulin var 98.1 1.2E-05 2.7E-10 78.5 8.3 70 2098-2167 2-91 (105)
260 cd05713 Ig_MOG_like Immunoglob 98.0 1.9E-05 4.2E-10 75.9 9.2 76 105-180 1-99 (100)
261 cd05879 Ig_P0 Immunoglobulin ( 98.0 3E-05 6.4E-10 75.2 10.2 83 97-179 5-115 (116)
262 cd05877 Ig_LP_like Immunoglobu 98.0 1.8E-05 3.8E-10 77.1 8.9 78 104-181 1-103 (106)
263 cd05714 Ig_CSPGs_LP Immunoglob 98.0 2.2E-05 4.8E-10 76.4 9.3 79 104-182 1-104 (106)
264 cd04982 IgV_TCR_gamma Immunogl 98.0 1.9E-05 4.1E-10 78.5 8.9 73 95-167 3-98 (116)
265 cd04980 IgV_L_kappa Immunoglob 98.0 1.7E-05 3.7E-10 77.1 8.3 73 2093-2165 6-93 (106)
266 cd05880 Ig_EVA1 Immunoglobulin 98.0 2.9E-05 6.2E-10 76.1 9.7 84 97-180 5-115 (115)
267 cd05879 Ig_P0 Immunoglobulin ( 98.0 4.9E-05 1.1E-09 73.7 10.8 79 2095-2173 6-110 (116)
268 cd04982 IgV_TCR_gamma Immunogl 98.0 1.9E-05 4.1E-10 78.5 8.1 70 2095-2164 6-98 (116)
269 cd00099 IgV Immunoglobulin var 98.0 2E-05 4.3E-10 77.0 8.0 70 101-170 2-91 (105)
270 cd05718 Ig1_PVR_like First imm 98.0 4E-05 8.7E-10 73.6 9.7 75 2103-2177 1-97 (98)
271 cd05741 Ig_CEACAM_D1_like Firs 98.0 2.3E-05 5E-10 74.2 7.8 72 2102-2176 1-91 (92)
272 cd05878 Ig_Aggrecan_like Immun 97.9 2.8E-05 6.1E-10 75.3 8.1 79 104-182 1-108 (110)
273 cd05711 Ig_FcalphaRI Immunoglo 97.9 2.8E-05 6.1E-10 72.8 7.6 74 2088-2163 2-75 (94)
274 cd05883 Ig2_Necl-2 Second immu 97.9 7.2E-05 1.6E-09 66.1 9.4 75 2104-2178 1-80 (82)
275 cd05711 Ig_FcalphaRI Immunoglo 97.9 3E-05 6.6E-10 72.6 7.5 74 184-259 2-75 (94)
276 cd04984 IgV_L_lambda Immunoglo 97.9 4.1E-05 8.8E-10 73.1 8.5 68 101-168 2-85 (98)
277 cd05715 Ig_P0-like Immunoglobu 97.9 4.5E-05 9.7E-10 75.4 9.0 76 96-171 4-105 (116)
278 cd05878 Ig_Aggrecan_like Immun 97.9 9.4E-05 2E-09 71.7 10.6 79 2101-2179 1-108 (110)
279 cd05775 Ig_SLAM-CD84_like_N N- 97.9 3.3E-05 7.1E-10 73.1 7.2 78 2100-2177 2-96 (97)
280 cd05880 Ig_EVA1 Immunoglobulin 97.9 7.3E-05 1.6E-09 73.3 9.6 83 2094-2176 5-114 (115)
281 cd05718 Ig1_PVR_like First imm 97.9 5.4E-05 1.2E-09 72.6 8.6 75 106-180 1-97 (98)
282 cd05775 Ig_SLAM-CD84_like_N N- 97.9 3.5E-05 7.6E-10 72.9 7.0 78 103-180 2-96 (97)
283 cd05761 Ig2_Necl-1-4_like Seco 97.8 7.2E-05 1.6E-09 68.2 8.6 66 2104-2169 1-71 (82)
284 cd04984 IgV_L_lambda Immunoglo 97.8 5.2E-05 1.1E-09 72.4 8.0 67 2098-2164 2-84 (98)
285 cd07705 Ig2_Necl-1 Second immu 97.8 9.1E-05 2E-09 67.3 9.1 64 2105-2169 2-72 (83)
286 cd05755 Ig2_ICAM-1_like Second 97.8 5.6E-05 1.2E-09 69.9 7.7 77 187-263 5-86 (100)
287 cd05741 Ig_CEACAM_D1_like Firs 97.8 6.4E-05 1.4E-09 71.1 7.3 72 105-179 1-91 (92)
288 PF07686 V-set: Immunoglobulin 97.7 0.00015 3.2E-09 72.5 9.9 87 94-180 5-114 (114)
289 cd05715 Ig_P0-like Immunoglobu 97.7 0.00013 2.9E-09 72.1 9.2 75 2094-2168 5-105 (116)
290 cd07706 IgV_TCR_delta Immunogl 97.7 0.00011 2.4E-09 72.8 8.5 75 94-168 3-94 (116)
291 KOG4802|consensus 97.7 0.00034 7.3E-09 78.0 12.6 85 900-986 251-342 (516)
292 cd05761 Ig2_Necl-1-4_like Seco 97.7 0.00018 4E-09 65.5 9.0 64 108-171 2-70 (82)
293 PHA02987 Ig domain OX-2-like p 97.7 0.00021 4.4E-09 72.5 9.1 87 99-185 24-126 (189)
294 cd00098 IgC Immunoglobulin Con 97.6 0.00012 2.7E-09 69.7 7.3 69 2100-2168 11-87 (95)
295 cd07705 Ig2_Necl-1 Second immu 97.6 0.00034 7.4E-09 63.6 9.6 64 108-171 2-71 (83)
296 cd05901 Ig_Versican Immunoglob 97.6 0.00035 7.5E-09 66.7 9.9 77 105-181 2-114 (117)
297 cd05888 Ig1_Nectin-4_like Frst 97.6 0.00037 8E-09 66.4 10.0 74 2104-2177 2-99 (100)
298 cd05902 Ig_Neurocan Immunoglob 97.6 0.00027 5.8E-09 67.7 8.8 77 105-181 2-107 (110)
299 cd05902 Ig_Neurocan Immunoglob 97.6 0.00026 5.6E-09 67.8 8.7 77 1712-1788 2-107 (110)
300 PF07686 V-set: Immunoglobulin 97.6 0.00042 9.2E-09 69.1 10.9 87 2091-2177 5-114 (114)
301 cd00063 FN3 Fibronectin type 3 97.6 0.00042 9.2E-09 65.9 10.4 85 902-987 1-86 (93)
302 cd05755 Ig2_ICAM-1_like Second 97.6 0.00023 5E-09 65.9 7.6 70 100-170 11-86 (100)
303 PHA02987 Ig domain OX-2-like p 97.6 0.00043 9.2E-09 70.3 9.9 85 192-276 24-124 (189)
304 cd05716 Ig_pIgR Immunoglobulin 97.6 0.00025 5.3E-09 67.9 8.0 70 100-169 2-87 (98)
305 cd05886 Ig1_Nectin-1_like Firs 97.5 0.00058 1.3E-08 64.1 9.9 74 2104-2177 2-98 (99)
306 cd00098 IgC Immunoglobulin Con 97.5 0.00027 5.9E-09 67.3 8.0 68 103-170 11-86 (95)
307 cd05901 Ig_Versican Immunoglob 97.5 0.00095 2.1E-08 63.7 11.2 77 2102-2178 2-114 (117)
308 cd07706 IgV_TCR_delta Immunogl 97.5 0.00035 7.5E-09 69.3 8.7 72 2093-2164 5-93 (116)
309 cd07700 IgV_CD8_beta Immunoglo 97.5 0.00033 7.2E-09 67.9 8.1 67 101-167 2-93 (107)
310 cd05887 Ig1_Nectin-3_like Firs 97.5 0.00057 1.2E-08 63.3 9.0 75 2103-2177 1-95 (96)
311 cd05846 Ig1_MRC-OX-2_like Firs 97.5 0.00036 7.8E-09 66.3 7.6 76 105-180 1-96 (97)
312 cd05846 Ig1_MRC-OX-2_like Firs 97.5 0.00037 8E-09 66.2 7.6 76 2102-2177 1-96 (97)
313 cd05884 Ig2_Necl-3 Second immu 97.4 0.00051 1.1E-08 62.2 8.0 64 2105-2168 2-71 (83)
314 cd07698 IgC_MHC_I_alpha3 Class 97.4 0.00088 1.9E-08 62.8 9.9 78 2087-2167 2-84 (93)
315 KOG1480|consensus 97.4 5.8E-05 1.3E-09 91.2 2.3 168 2-182 19-220 (909)
316 cd07700 IgV_CD8_beta Immunoglo 97.4 0.0005 1.1E-08 66.7 8.4 67 2098-2164 2-93 (107)
317 cd05886 Ig1_Nectin-1_like Firs 97.4 0.00078 1.7E-08 63.2 9.1 75 107-181 2-99 (99)
318 cd05716 Ig_pIgR Immunoglobulin 97.4 0.0006 1.3E-08 65.2 8.6 69 2098-2166 3-87 (98)
319 cd05888 Ig1_Nectin-4_like Frst 97.4 0.00082 1.8E-08 64.1 9.3 75 1439-1513 2-99 (100)
320 cd05712 Ig_Siglec_N Immunoglob 97.4 0.00057 1.2E-08 67.8 8.5 73 96-168 5-102 (119)
321 cd00063 FN3 Fibronectin type 3 97.4 0.0011 2.4E-08 63.0 10.5 85 670-755 1-87 (93)
322 cd05887 Ig1_Nectin-3_like Firs 97.4 0.00076 1.7E-08 62.5 8.4 75 106-180 1-95 (96)
323 cd05884 Ig2_Necl-3 Second immu 97.4 0.00076 1.6E-08 61.1 8.1 63 108-170 2-70 (83)
324 cd05720 Ig_CD8_alpha Immunoglo 97.4 0.00053 1.2E-08 65.9 7.4 67 101-167 2-90 (104)
325 cd05712 Ig_Siglec_N Immunoglob 97.3 0.00085 1.8E-08 66.6 8.9 73 1429-1501 6-102 (119)
326 cd05772 IgC_SIRP Signal-regula 97.3 0.0016 3.4E-08 62.7 9.5 81 180-262 2-92 (111)
327 cd07694 Ig2_CD4 Second immunog 97.2 0.0025 5.5E-08 56.1 9.4 76 192-273 8-85 (88)
328 KOG1480|consensus 97.2 0.00013 2.8E-09 88.3 2.1 181 89-274 23-219 (909)
329 cd07694 Ig2_CD4 Second immunog 97.2 0.0025 5.5E-08 56.0 9.2 74 2098-2177 10-85 (88)
330 cd05720 Ig_CD8_alpha Immunoglo 97.2 0.00082 1.8E-08 64.6 7.0 67 2098-2164 2-90 (104)
331 PF10179 DUF2369: Uncharacteri 97.2 0.11 2.4E-06 58.8 24.1 148 956-1118 126-287 (300)
332 cd04981 IgV_H Immunoglobulin ( 97.2 0.0013 2.8E-08 64.8 8.1 72 96-167 3-97 (117)
333 cd05772 IgC_SIRP Signal-regula 97.1 0.0037 8.1E-08 60.1 10.6 80 87-169 5-92 (111)
334 smart00060 FN3 Fibronectin typ 97.1 0.0026 5.6E-08 58.7 9.4 77 903-982 2-81 (83)
335 PHA03269 envelope glycoprotein 97.1 0.028 6.1E-07 65.2 18.5 198 44-259 288-511 (566)
336 PF08205 C2-set_2: CD80-like C 97.1 0.002 4.3E-08 60.3 8.2 66 105-170 14-85 (89)
337 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.003 6.4E-08 59.3 8.9 65 105-169 14-83 (93)
338 cd00096 Ig Immunoglobulin doma 97.0 0.0019 4.1E-08 57.8 7.5 63 2105-2167 1-67 (74)
339 PF08205 C2-set_2: CD80-like C 97.0 0.0039 8.5E-08 58.3 9.5 68 2102-2169 14-87 (89)
340 cd05766 IgC_MHC_II_beta Class 96.9 0.0069 1.5E-07 56.6 10.1 69 2099-2167 11-84 (94)
341 cd05770 IgC_beta2m Class I maj 96.9 0.0086 1.9E-07 55.3 10.2 67 2099-2166 12-83 (93)
342 smart00407 IGc1 Immunoglobulin 96.9 0.0061 1.3E-07 54.4 9.0 63 2104-2166 1-71 (75)
343 cd04981 IgV_H Immunoglobulin ( 96.9 0.0055 1.2E-07 60.4 9.6 72 189-260 3-97 (117)
344 cd00096 Ig Immunoglobulin doma 96.9 0.0029 6.4E-08 56.5 7.1 62 108-169 1-66 (74)
345 cd05767 IgC_MHC_II_alpha Class 96.8 0.0094 2E-07 55.3 9.7 64 2100-2166 13-84 (94)
346 PHA03270 envelope glycoprotein 96.8 0.085 1.8E-06 60.8 18.5 163 45-225 182-362 (466)
347 smart00060 FN3 Fibronectin typ 96.8 0.0079 1.7E-07 55.3 9.3 74 1237-1313 6-82 (83)
348 PHA03271 envelope glycoprotein 96.7 0.1 2.2E-06 59.5 18.7 167 43-224 205-387 (490)
349 PHA03273 envelope glycoprotein 96.7 0.072 1.6E-06 62.1 17.9 161 45-221 198-376 (486)
350 smart00406 IGv Immunoglobulin 96.7 0.0033 7.3E-08 57.7 6.2 59 107-165 1-81 (81)
351 cd05889 Ig1_DNAM-1_like First 96.7 0.0092 2E-07 55.5 8.5 73 1713-1785 1-93 (96)
352 cd07699 IgC_L Immunoglobulin C 96.6 0.0047 1E-07 58.6 6.8 80 183-262 1-89 (100)
353 KOG1026|consensus 96.6 0.0021 4.5E-08 80.9 5.4 353 489-902 201-574 (774)
354 cd07699 IgC_L Immunoglobulin C 96.6 0.0061 1.3E-07 57.8 7.4 69 2098-2166 13-89 (100)
355 cd05719 Ig2_PVR_like Second im 96.6 0.011 2.3E-07 55.2 8.6 71 199-272 16-94 (95)
356 PF10179 DUF2369: Uncharacteri 96.6 0.34 7.4E-06 55.0 21.5 107 1203-1315 136-287 (300)
357 cd07692 Ig_CD3_epsilon Immunog 96.5 0.0057 1.2E-07 50.3 5.5 52 2100-2165 5-56 (65)
358 smart00407 IGc1 Immunoglobulin 96.5 0.012 2.6E-07 52.5 8.4 63 107-169 1-71 (75)
359 smart00406 IGv Immunoglobulin 96.5 0.0069 1.5E-07 55.6 7.1 58 2104-2161 1-80 (81)
360 cd05766 IgC_MHC_II_beta Class 96.5 0.011 2.3E-07 55.3 8.2 64 196-262 12-83 (94)
361 cd05889 Ig1_DNAM-1_like First 96.5 0.016 3.4E-07 54.0 9.1 73 2103-2175 1-93 (96)
362 cd05847 IgC_CH2_IgE CH2 domain 96.5 0.014 3.1E-07 54.3 8.5 70 2101-2170 13-90 (94)
363 cd05767 IgC_MHC_II_alpha Class 96.4 0.018 3.8E-07 53.5 9.0 66 103-168 13-83 (94)
364 cd05770 IgC_beta2m Class I maj 96.4 0.02 4.4E-07 52.9 8.9 65 103-168 13-82 (93)
365 cd05719 Ig2_PVR_like Second im 96.4 0.021 4.6E-07 53.2 9.0 65 105-172 15-85 (95)
366 cd05847 IgC_CH2_IgE CH2 domain 96.4 0.016 3.5E-07 53.9 8.2 67 104-170 13-87 (94)
367 cd05721 IgV_CTLA-4 Immunoglobu 96.3 0.018 4E-07 54.2 8.3 68 97-165 5-93 (115)
368 cd05769 IgC_TCR_beta T cell re 96.3 0.014 3.1E-07 56.3 7.7 78 96-173 9-96 (115)
369 cd07691 Ig_CD3_gamma_delta Imm 96.2 0.012 2.6E-07 48.8 5.3 60 197-274 5-64 (69)
370 PHA03271 envelope glycoprotein 96.1 1.4 3.1E-05 50.7 22.8 204 435-652 207-429 (490)
371 cd05768 IgC_CH4 CH4 domain (fo 96.1 0.013 2.7E-07 55.8 6.1 69 101-169 12-91 (102)
372 cd07692 Ig_CD3_epsilon Immunog 96.0 0.0085 1.8E-07 49.4 4.0 51 196-260 5-55 (65)
373 PF07654 C1-set: Immunoglobuli 96.0 0.027 5.9E-07 51.6 7.7 65 2101-2168 7-79 (83)
374 cd07696 IgC_CH3 CH3 domain (th 96.0 0.03 6.5E-07 52.4 7.9 74 96-169 5-86 (96)
375 cd05768 IgC_CH4 CH4 domain (fo 95.9 0.02 4.3E-07 54.4 6.7 68 2099-2166 13-91 (102)
376 cd07703 Ig2_Nectin-2_like Seco 95.9 0.042 9E-07 51.0 8.5 72 2103-2175 16-91 (95)
377 cd07697 IgC_TCR_gamma T cell r 95.9 0.027 5.9E-07 52.4 7.1 67 102-168 13-84 (96)
378 cd07696 IgC_CH3 CH3 domain (th 95.8 0.044 9.5E-07 51.3 8.3 73 190-262 6-86 (96)
379 cd07703 Ig2_Nectin-2_like Seco 95.7 0.065 1.4E-06 49.8 9.1 69 106-175 16-88 (95)
380 PHA03270 envelope glycoprotein 95.7 0.24 5.2E-06 57.3 14.9 79 146-226 182-265 (466)
381 cd05769 IgC_TCR_beta T cell re 95.7 0.059 1.3E-06 52.1 8.8 79 2096-2174 12-100 (115)
382 PHA02982 hypothetical protein; 95.7 0.08 1.7E-06 54.1 9.8 119 99-223 33-173 (251)
383 COG3401 Fibronectin type 3 dom 95.6 0.34 7.4E-06 54.5 15.4 298 956-1315 29-333 (343)
384 cd07697 IgC_TCR_gamma T cell r 95.5 0.082 1.8E-06 49.3 8.7 64 2099-2165 13-84 (96)
385 cd07704 Ig2_Nectin-3-4_like Se 95.5 0.041 8.8E-07 50.8 6.6 72 191-263 9-85 (97)
386 PHA03269 envelope glycoprotein 95.5 0.71 1.5E-05 54.3 17.7 80 145-226 288-373 (566)
387 PHA02633 hypothetical protein; 95.5 0.029 6.3E-07 45.1 4.7 37 147-183 19-55 (63)
388 KOG4597|consensus 95.4 0.034 7.3E-07 64.3 7.2 122 2056-2178 166-292 (560)
389 cd07691 Ig_CD3_gamma_delta Imm 95.3 0.038 8.1E-07 45.9 5.2 61 104-182 5-65 (69)
390 cd04985 IgC_CH1 CH1 domain (fi 95.3 0.09 1.9E-06 49.1 8.4 65 2101-2166 15-87 (95)
391 PF07654 C1-set: Immunoglobuli 95.3 0.15 3.2E-06 46.8 9.8 67 104-170 7-78 (83)
392 cd05721 IgV_CTLA-4 Immunoglobu 95.2 0.12 2.7E-06 48.9 8.8 67 2096-2162 7-93 (115)
393 PHA02982 hypothetical protein; 95.1 0.12 2.7E-06 52.8 9.1 119 1705-1829 32-172 (251)
394 PHA03273 envelope glycoprotein 94.9 0.27 5.9E-06 57.6 12.4 78 146-225 198-280 (486)
395 cd07689 Ig2_VCAM-1 Second immu 94.9 0.092 2E-06 48.0 7.0 65 195-260 12-84 (99)
396 cd04985 IgC_CH1 CH1 domain (fi 94.8 0.12 2.7E-06 48.2 7.9 65 197-262 15-87 (95)
397 cd07704 Ig2_Nectin-3-4_like Se 94.7 0.18 3.8E-06 46.7 8.4 70 100-170 11-85 (97)
398 cd07689 Ig2_VCAM-1 Second immu 94.6 0.13 2.8E-06 47.0 7.0 65 102-168 12-85 (99)
399 KOG4367|consensus 94.5 0.025 5.4E-07 63.5 2.8 74 1243-1318 450-523 (699)
400 KOG4228|consensus 94.3 0.16 3.5E-06 66.5 9.7 103 646-755 1-103 (1087)
401 PHA02914 Immunoglobulin-like d 94.1 14 0.00031 42.7 30.5 121 1705-1831 272-421 (500)
402 KOG4152|consensus 93.9 0.16 3.5E-06 59.1 7.8 76 961-1040 650-726 (830)
403 COG3401 Fibronectin type 3 dom 93.7 2.4 5.3E-05 48.0 15.9 119 915-1045 83-203 (343)
404 KOG4367|consensus 93.4 0.064 1.4E-06 60.4 3.4 75 912-988 449-523 (699)
405 PF08204 V-set_CD47: CD47 immu 93.1 0.25 5.4E-06 48.1 6.4 77 197-274 26-120 (130)
406 cd04986 IgC_CH2 CH2 domain (se 93.1 0.13 2.9E-06 47.8 4.5 72 96-169 10-89 (99)
407 PF01108 Tissue_fac: Tissue fa 92.8 0.58 1.2E-05 45.3 8.8 82 900-984 20-105 (107)
408 PHA02633 hypothetical protein; 92.8 0.34 7.3E-06 39.3 5.6 39 2144-2182 19-57 (63)
409 PF08204 V-set_CD47: CD47 immu 92.7 0.18 4E-06 49.0 5.0 79 2099-2178 24-120 (130)
410 cd04986 IgC_CH2 CH2 domain (se 92.5 0.38 8.2E-06 44.9 6.6 71 2094-2167 11-90 (99)
411 KOG4152|consensus 92.3 0.4 8.6E-06 56.0 7.9 36 726-761 648-683 (830)
412 KOG3632|consensus 92.1 0.56 1.2E-05 59.6 9.3 132 900-1041 670-814 (1335)
413 KOG4597|consensus 91.7 0.3 6.6E-06 56.8 6.0 90 91-180 197-291 (560)
414 PHA02914 Immunoglobulin-like d 90.1 11 0.00025 43.4 16.0 159 97-261 271-466 (500)
415 PF07354 Sp38: Zona-pellucida- 89.8 0.46 9.9E-06 51.6 4.9 50 2114-2166 10-60 (271)
416 PF07354 Sp38: Zona-pellucida- 89.6 0.42 9.1E-06 51.9 4.5 48 118-168 11-59 (271)
417 KOG1026|consensus 88.8 0.5 1.1E-05 60.5 5.2 161 100-277 202-366 (774)
418 PF01108 Tissue_fac: Tissue fa 88.6 1.8 3.9E-05 41.9 7.9 79 1231-1312 21-103 (107)
419 PHA03042 CD47-like protein; Pr 88.3 1.5 3.2E-05 47.9 7.4 72 2100-2178 29-105 (286)
420 KOG3632|consensus 87.9 3.4 7.3E-05 53.1 11.1 89 898-989 765-861 (1335)
421 PF02124 Marek_A: Marek's dise 87.8 13 0.00029 40.0 13.8 131 121-259 8-158 (211)
422 PF11465 Receptor_2B4: Natural 87.1 2.6 5.5E-05 39.1 7.0 34 1472-1505 64-97 (108)
423 KOG0200|consensus 87.0 11 0.00025 49.9 16.4 86 814-899 290-384 (609)
424 PHA03042 CD47-like protein; Pr 86.9 2.4 5.3E-05 46.3 8.0 69 198-273 31-104 (286)
425 PHA03283 envelope glycoprotein 86.3 14 0.0003 45.0 14.3 73 147-219 135-233 (542)
426 PF03921 ICAM_N: Intercellular 84.2 30 0.00066 31.8 12.3 84 1701-1792 7-90 (91)
427 PF09294 Interfer-bind: Interf 83.9 3.6 7.8E-05 39.9 7.3 73 903-978 4-87 (106)
428 PF11465 Receptor_2B4: Natural 83.7 9.2 0.0002 35.7 8.9 66 2111-2178 36-107 (108)
429 TIGR00868 hCaCC calcium-activa 83.3 1.9E+02 0.0042 39.4 26.0 81 901-983 755-854 (863)
430 KOG4806|consensus 82.4 80 0.0017 36.2 17.0 144 958-1117 284-436 (454)
431 PF09294 Interfer-bind: Interf 82.2 2.4 5.1E-05 41.2 5.3 68 676-744 8-86 (106)
432 PF06328 Lep_receptor_Ig: Ig-l 82.1 6.1 0.00013 36.3 7.3 68 97-166 10-82 (89)
433 PF05790 C2-set: Immunoglobuli 81.6 13 0.00029 33.3 9.1 52 212-273 26-78 (80)
434 PF05790 C2-set: Immunoglobuli 80.9 25 0.00054 31.7 10.5 52 2116-2177 26-78 (80)
435 PHA02865 MHC-like TNF binding 80.5 5.6 0.00012 46.2 8.0 35 2086-2124 202-238 (338)
436 KOG0595|consensus 80.4 2.1 4.6E-05 50.0 4.7 79 818-896 8-88 (429)
437 PF06328 Lep_receptor_Ig: Ig-l 80.3 8.8 0.00019 35.3 7.7 69 189-259 9-82 (89)
438 KOG4806|consensus 79.0 30 0.00066 39.4 12.5 108 1203-1316 294-438 (454)
439 KOG0593|consensus 78.8 1 2.3E-05 49.9 1.6 78 821-898 3-82 (396)
440 PF02124 Marek_A: Marek's dise 77.3 89 0.0019 34.0 15.0 166 5-190 5-183 (211)
441 PHA03286 envelope glycoprotein 76.9 45 0.00097 39.9 13.7 73 147-219 128-225 (492)
442 PF03921 ICAM_N: Intercellular 76.9 49 0.0011 30.5 11.1 84 93-185 6-90 (91)
443 PF09067 EpoR_lig-bind: Erythr 76.9 8.1 0.00018 36.7 6.6 80 668-750 6-95 (104)
444 PHA02865 MHC-like TNF binding 73.6 7.8 0.00017 45.0 6.7 21 200-220 216-238 (338)
445 PF06832 BiPBP_C: Penicillin-B 71.7 22 0.00047 33.0 8.2 75 2085-2171 8-86 (89)
446 KOG0600|consensus 71.5 2.7 5.8E-05 50.6 2.5 78 820-897 117-198 (560)
447 PF09067 EpoR_lig-bind: Erythr 70.8 19 0.00042 34.3 7.5 81 900-983 6-95 (104)
448 PF06832 BiPBP_C: Penicillin-B 70.3 20 0.00043 33.2 7.6 75 88-174 8-86 (89)
449 PHA03282 envelope glycoprotein 69.7 92 0.002 37.5 13.9 29 37-65 116-144 (540)
450 KOG1094|consensus 69.2 2.4 5.1E-05 51.7 1.5 80 818-898 536-616 (807)
451 KOG0033|consensus 68.9 0.3 6.5E-06 51.9 -5.1 81 818-898 9-91 (355)
452 PHA03283 envelope glycoprotein 68.6 1.2E+02 0.0027 37.4 15.0 72 1755-1826 136-233 (542)
453 COG4733 Phage-related protein, 66.6 36 0.00078 44.1 10.7 127 956-1118 658-784 (952)
454 KOG0659|consensus 66.3 5.9 0.00013 43.6 3.5 79 821-899 3-83 (318)
455 PHA03281 envelope glycoprotein 65.5 78 0.0017 38.8 12.5 104 21-126 263-394 (642)
456 PF02480 Herpes_gE: Alphaherpe 65.5 11 0.00025 46.6 6.3 83 44-126 88-189 (439)
457 PHA03052 Hypothetical protein; 64.4 18 0.00039 30.4 5.0 35 98-132 5-42 (69)
458 KOG4228|consensus 62.8 41 0.00089 45.4 10.7 129 887-1026 10-139 (1087)
459 PHA03189 UL14 tegument protein 62.6 49 0.0011 37.2 9.5 80 188-268 57-163 (348)
460 PHA03282 envelope glycoprotein 62.6 1.7E+02 0.0037 35.4 14.3 26 1844-1869 331-356 (540)
461 KOG0032|consensus 62.3 9.6 0.00021 46.7 4.9 83 817-899 32-118 (382)
462 PHA03189 UL14 tegument protein 60.8 63 0.0014 36.4 9.9 80 1796-1875 58-163 (348)
463 KOG0611|consensus 59.6 5.2 0.00011 46.2 1.8 82 818-899 51-135 (668)
464 KOG4278|consensus 57.8 5.2 0.00011 48.9 1.5 86 813-899 260-345 (1157)
465 PHA03286 envelope glycoprotein 57.5 2.5E+02 0.0055 34.1 14.5 72 1755-1826 129-225 (492)
466 KOG0663|consensus 56.7 8.7 0.00019 43.8 2.8 71 820-890 76-148 (419)
467 KOG0579|consensus 54.6 2.2 4.8E-05 52.0 -2.1 84 814-897 26-109 (1187)
468 KOG0615|consensus 53.7 22 0.00047 42.1 5.4 84 818-901 170-260 (475)
469 KOG0581|consensus 51.8 14 0.00031 43.1 3.6 82 821-902 80-163 (364)
470 KOG4236|consensus 50.3 17 0.00037 43.9 4.0 76 821-896 563-642 (888)
471 cd05890 Ig2_Nectin-1_like Seco 49.8 27 0.0006 31.9 4.2 67 201-272 23-97 (98)
472 KOG0197|consensus 49.2 13 0.00027 45.7 2.8 85 813-899 199-283 (468)
473 PHA03052 Hypothetical protein; 48.0 53 0.0011 27.8 5.1 38 190-227 4-44 (69)
474 cd05107 PTKc_PDGFR_beta Cataly 47.5 35 0.00076 42.8 6.6 88 809-896 26-120 (401)
475 PF02010 REJ: REJ domain; Int 46.5 33 0.00072 43.9 6.4 79 2040-2123 258-340 (440)
476 KOG0200|consensus 46.3 1.9E+02 0.0042 38.6 13.5 113 43-169 11-140 (609)
477 KOG0582|consensus 45.9 22 0.00047 42.6 3.9 83 813-895 19-102 (516)
478 PF07495 Y_Y_Y: Y_Y_Y domain; 45.8 44 0.00095 28.7 5.1 40 1273-1315 16-55 (66)
479 KOG0597|consensus 45.5 11 0.00024 46.2 1.6 78 821-898 3-82 (808)
480 KOG0662|consensus 44.5 13 0.00028 37.8 1.6 69 821-889 3-73 (292)
481 PHA03281 envelope glycoprotein 44.3 5E+02 0.011 32.5 14.4 72 1755-1826 300-394 (642)
482 PF02010 REJ: REJ domain; Int 43.7 13 0.00029 47.6 2.1 280 434-720 37-353 (440)
483 PF02440 Adeno_E3_CR1: Adenovi 41.9 62 0.0013 27.4 4.8 52 2099-2156 2-63 (63)
484 KOG0194|consensus 41.8 32 0.0007 42.9 4.8 86 814-899 151-243 (474)
485 cd05105 PTKc_PDGFR_alpha Catal 41.0 54 0.0012 41.2 6.9 91 807-897 24-121 (400)
486 KOG1225|consensus 40.2 82 0.0018 39.8 7.8 123 902-1040 366-489 (525)
487 PLN02533 probable purple acid 38.3 1.1E+02 0.0023 38.6 8.8 68 669-742 40-120 (427)
488 PF09240 IL6Ra-bind: Interleuk 37.7 3.6E+02 0.0079 25.6 10.5 79 904-984 1-87 (99)
489 PF11141 DUF2914: Protein of u 35.9 1.9E+02 0.0041 25.0 7.0 58 2118-2177 8-65 (66)
490 PF02480 Herpes_gE: Alphaherpe 35.3 51 0.0011 41.1 5.2 20 2144-2163 270-289 (439)
491 cd05104 PTKc_Kit Catalytic dom 35.0 48 0.001 41.3 5.1 89 808-896 23-118 (375)
492 COG4733 Phage-related protein, 34.7 1.1E+03 0.023 31.8 16.0 120 632-755 660-787 (952)
493 KOG0575|consensus 34.6 60 0.0013 40.9 5.5 79 820-898 18-99 (592)
494 KOG0591|consensus 34.4 8.3 0.00018 42.8 -1.5 67 818-884 17-85 (375)
495 TIGR00868 hCaCC calcium-activa 34.3 1.4E+03 0.031 31.5 19.6 35 1336-1372 760-796 (863)
496 KOG0605|consensus 34.2 49 0.0011 40.9 4.5 80 819-898 140-222 (550)
497 KOG1948|consensus 32.5 7.8E+02 0.017 32.9 14.3 19 1093-1111 948-966 (1165)
498 PLN02533 probable purple acid 32.3 1.5E+02 0.0032 37.4 8.6 71 900-976 39-121 (427)
499 cd06611 STKc_SLK_like Catalyti 32.3 43 0.00092 39.7 3.9 73 818-890 3-75 (280)
500 KOG0580|consensus 32.3 60 0.0013 35.7 4.3 84 820-903 22-108 (281)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.9e-75 Score=716.04 Aligned_cols=802 Identities=25% Similarity=0.347 Sum_probs=628.6
Q ss_pred cCCcceEEecc---------eeeeeceEEECCCc-cCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceec-CC
Q psy7042 29 VGGAIWLKCND---------YNVLECSFSVLNLV-EGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIV-PL 97 (2245)
Q Consensus 29 ~~~~~w~~~~~---------~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~-~~ 97 (2245)
..+-+|++||. .....++|.|++.. ..|.|.|+|.|+|..|...+....... ...+.|.. ..
T Consensus 71 ~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~-------~~i~~F~~e~~ 143 (1051)
T KOG3513|consen 71 EPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQF-------GFIPKFKKEER 143 (1051)
T ss_pred CceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeecccceeeccceeecc-------cccccCccccC
Confidence 34457888775 22347899999998 999999999999999998765433221 35677764 56
Q ss_pred cceEEeCCCeEEEEEEE-eeecCCceEEEECCeec-c--CCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccce
Q psy7042 98 KDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGREI-S--SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAH 173 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~l-~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 173 (2245)
+.+.+.+|+.+.|.|.. .+.|.+++.|..+..+- . .+.|+.....|. |.|.++..+|.+.|.|.|.+......
T Consensus 144 ~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~---Lyfs~V~~~D~~~Y~C~a~~~~~~~~ 220 (1051)
T KOG3513|consen 144 SPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGN---LYFSNVETSDFGNYICSATFPSTQTI 220 (1051)
T ss_pred CcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccce---EEEeecchhhcCceEEEEEchhhccc
Confidence 67899999999999998 56788999998865432 2 223666666554 99999999999999999998443222
Q ss_pred ---eEEEEEe-------cCCCeeecC-CCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEE
Q psy7042 174 ---TSSRVKI-------GTPPRIDRM-PNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIF 242 (2245)
Q Consensus 174 ---~~~~l~V-------~~~P~~~~~-~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~ 242 (2245)
.-+.|++ ..+|+|... |.......|+.+.|.|.+.|+|.|.|.|+|.|.....+ +.... ....+|.
T Consensus 221 v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~-r~~~~--~~~~vL~ 297 (1051)
T KOG3513|consen 221 VQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPR-RATYS--NYGKVLK 297 (1051)
T ss_pred ccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCc-ceeee--ccccEEE
Confidence 1344555 346776654 55778889999999999999999999999977642222 22222 2334899
Q ss_pred EcccCccCceeEEEEEEcCCcceEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEEEEEEEecCCC
Q psy7042 243 IKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMP 322 (2245)
Q Consensus 243 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~~~~~~~~ 322 (2245)
|.+++.+|+|.|+|.|.|..|.......|+|..+|.....+-
T Consensus 298 I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~-------------------------------------- 339 (1051)
T KOG3513|consen 298 IPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQ-------------------------------------- 339 (1051)
T ss_pred ecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccc--------------------------------------
Confidence 999999999999999999999999999999998886432211
Q ss_pred ceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeEEEecCCC
Q psy7042 323 HWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPL 402 (2245)
Q Consensus 323 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~l~W~~~~ 402 (2245)
-..+..+....+.|.|. +.+...++|.+++
T Consensus 340 ---------------d~~~~~gs~v~~eC~a~-----------------------------------g~P~p~v~WlkNg 369 (1051)
T KOG3513|consen 340 ---------------DTEADTGSNVTLECKAS-----------------------------------GKPNPTVKWLKNG 369 (1051)
T ss_pred ---------------eeEecCCCCeEEEEEec-----------------------------------CCCCCceEEeeCC
Confidence 11234577778888883 3444689999864
Q ss_pred CCCCC--CccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCCcccCC
Q psy7042 403 DDGGS--RIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKA 480 (2245)
Q Consensus 403 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~~~~ 480 (2245)
..... ...++.+ ....|.|.++...|+|+|+|.|.|..|... ++..+.|. ..+
T Consensus 370 ~pl~~~~r~~~~~i------------------~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~---anA~L~V~----a~~ 424 (1051)
T KOG3513|consen 370 EPLEPAERDPRYKI------------------DDGTLIISNVQESDSGVYQCIAENKYGTIY---ANAELKVL----ASA 424 (1051)
T ss_pred eecCccCCCcceEE------------------eCCEEEEEecccccCeEEEeeeecccceEe---eeeEEEEE----ccC
Confidence 43221 1111111 236799999999999999999999999765 33344443 245
Q ss_pred Cceeccccc--cccccccceeeEEEEeccCcCeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCCceEEEEEEeC
Q psy7042 481 PEIIVPLRN--ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 558 (2245)
Q Consensus 481 p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 558 (2245)
|.|...+-. ..+..|.++.|.|...+.|.+.+.|.|+++.+..+.|+.+..+| +|.|.+++.+|+|.|+|.|.|.
T Consensus 425 P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~ 501 (1051)
T KOG3513|consen 425 PVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENK 501 (1051)
T ss_pred CCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcc
Confidence 777666644 46788999999999999999999999999988889999999999 7999999999999999999999
Q ss_pred CCCCCcceeEeEecCCCCCCCCCcccceEeeCCCeEEEEEeeeecCC--CeEEEEeCCeEee---ccCeEEEEecCCeEE
Q psy7042 559 GGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPK--PKITWYRDNEVIE---SGGHFHVETSERHAI 633 (2245)
Q Consensus 559 ~g~~~~~~~l~v~~~p~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~--~~i~W~~~~~~~~---~~~~~~~~~~~~~~~ 633 (2245)
.|.....+.|.|+.++.|..+|.. ..+..|+.++|.|++..+|. +.|.|.+||..+. .+.++......+...
T Consensus 502 ~G~a~~~~~L~Vkd~tri~~~P~~---~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~ 578 (1051)
T KOG3513|consen 502 LGKAESTGNLIVKDATRITLAPSN---TDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGR 578 (1051)
T ss_pred cCccceEEEEEEecCceEEeccch---hhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccc
Confidence 999999999999999999887753 45788999999999987764 5799999999763 445555554444478
Q ss_pred EEEcCCCCCcCEEEEEEEEeCCCCceeEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCC
Q psy7042 634 LTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPM 713 (2245)
Q Consensus 634 l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~ 713 (2245)
|+|.+++..|+|.|.|+|.....+.++.+.+.|.++|.||.++.+.+++.+++.|+|+ |+.|++++|..|.|+.+....
T Consensus 579 L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~-~g~dn~SpI~~Y~iq~rt~~~ 657 (1051)
T KOG3513|consen 579 LTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWS-PGSDNNSPIEKYTIQFRTPFP 657 (1051)
T ss_pred eEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEee-cCCCCCCCceEEeEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 556777899999999999988
Q ss_pred CCeEEEce---eee--eeEEEecCCCCCEEEEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeeccc
Q psy7042 714 SSWIRVGN---TRF--TTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKA 788 (2245)
Q Consensus 714 ~~w~~~~~---~~~--~~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 788 (2245)
..|..+.. ... .+.++.+|.|...|+|||.|+|..|.|++|..++...|.++.|
T Consensus 658 ~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P--------------------- 716 (1051)
T KOG3513|consen 658 GKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP--------------------- 716 (1051)
T ss_pred CcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC---------------------
Confidence 89987652 111 3577999999999999999999999999999999888777543
Q ss_pred ccccccCCceEEEEeeeccCccccccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheee
Q psy7042 789 DEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEI 868 (2245)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (2245)
T Consensus 717 -------------------------------------------------------------------------------- 716 (1051)
T KOG3513|consen 717 -------------------------------------------------------------------------------- 716 (1051)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCceEeecccccCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEecCC--CCCCCCccceEEEeeeecCCC
Q psy7042 869 DIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPP--RDNGGSEITNYVVEKKDYNST 946 (2245)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p--~~~~g~~i~~y~i~~~~~~~~ 946 (2245)
-..|.++.......+.+.|+|+|- ...+| +-.+|+|.|++.+..
T Consensus 717 ---------------------------------~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG-~gfgY~Vswr~~g~~ 762 (1051)
T KOG3513|consen 717 ---------------------------------SVNPSNVKGGGGSPTELVITWEPLPEEEQNG-PGFGYRVSWRPQGAD 762 (1051)
T ss_pred ---------------------------------ccCCccccccCCCCceEEEEeccCCHHHccC-CCceEEEEEEeCCCC
Confidence 135667777667788899999984 34454 889999999998888
Q ss_pred -ceEEeccee-eeceEEE--ecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCC-CCCCCeeEeecCCeEEEE
Q psy7042 947 -VWTKVSSYV-TTPFVRV--RNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG-APGAPKGVDSTEDSISLV 1021 (2245)
Q Consensus 947 -~~~~~~~~~-~~~~~~i--~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~-~p~~~~~~~~~~~~v~l~ 1021 (2245)
.|++..... ....+.+ .-..|++.|++.|.|.|+.|.|+.+. .+.+...++.|. +|..+.+...+.+.+.|+
T Consensus 763 ~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~---~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~ 839 (1051)
T KOG3513|consen 763 KEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQ---VTVGYSGEDEPPVAPTKLSAKPLSSSEVNLS 839 (1051)
T ss_pred cccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCc---eEEEEcCCCCCCCCCccceeecccCceEEEE
Confidence 898766544 2334444 44667999999999999999998874 444444566665 999999999999999999
Q ss_pred ecCCCCCCCCccceEEEEEEecCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCC
Q psy7042 1022 WSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIEN 1101 (2245)
Q Consensus 1022 W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~ 1101 (2245)
|++|...+| .+.+|.|+|...++.. ..+....+.... .. ..|.||+++
T Consensus 840 W~~~~~~nG-~l~gY~v~Y~~~~~~~-~~~~~~~i~~~~---~~---------------------------~~ltgL~~~ 887 (1051)
T KOG3513|consen 840 WKPPLWDNG-KLTGYEVKYWKINEKE-GSLSRVQIAGNR---TS---------------------------WRLTGLEPN 887 (1051)
T ss_pred ecCcCccCC-ccceeEEEEEEcCCCc-ccccceeecCCc---ce---------------------------EeeeCCCCC
Confidence 999988885 4899999998776553 112111111111 01 169999999
Q ss_pred cEEEEEEEEEecCCCCCCCCCCcceeecCCCC
Q psy7042 1102 HEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPC 1133 (2245)
Q Consensus 1102 ~~Y~~~v~A~n~~G~~~~s~~~~~~~~~~~p~ 1133 (2245)
+.|.|.|+|.|.+|.|+.+.....++..++|.
T Consensus 888 T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~pPs 919 (1051)
T KOG3513|consen 888 TKYRFYVRAYTSAGGGPASSEENVTTKKAPPS 919 (1051)
T ss_pred ceEEEEEEEecCCCCCCCccceeccccCCCCc
Confidence 99999999999999999998888877666665
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.9e-73 Score=698.40 Aligned_cols=884 Identities=25% Similarity=0.391 Sum_probs=640.4
Q ss_pred CceecCCcceEE-eCCC--eEEEEEEEeeecCCceEEEECCeeccCCC--eEEEEEcCcEEEEEEeeec-cCCCeEEEEE
Q psy7042 91 PDFIVPLKDLVV-PLGK--LLTLQCEATGTPVPKCRWLRNGREISSGA--RYRVETAGGVFRLHFNEVT-DVDNGDYTCE 164 (2245)
Q Consensus 91 P~~~~~~~~~~v-~~G~--~v~L~C~~~g~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~ 164 (2245)
|.|+..+.+..+ ..-+ .+.|.|.+.|+|.|++.|+|||..+.... ++.+. +|. |.|.+.. ..|.|.|+|.
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~--~G~--lvI~~p~~~~d~G~YqC~ 115 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVL--GGT--LVITNPDAALDQGIYQCF 115 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceeee--cCc--eEecCCcchhhcceeEEE
Confidence 888887775433 2222 49999999999999999999999887544 44444 553 7777776 8999999999
Q ss_pred EEcCccccee-EEEEEecCCCeee-cCCCceEEcCCCeEEEEEEE-ecCCCceEEEeeCceeee-cCC--ceEEEEeCCe
Q psy7042 165 AYNSVGFAHT-SSRVKIGTPPRID-RMPNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQ-SDD--RFKFTVLDDY 238 (2245)
Q Consensus 165 a~n~~g~~~~-~~~l~V~~~P~~~-~~~~~~~v~~G~~~~l~C~~-~g~p~~~i~W~~~g~~l~-~~~--~~~~~~~~~~ 238 (2245)
|+|..|.+.+ .+.|.....+.|. .....+.+.+|+.+.|.|.. .+.|.+.+.|..++.+.. ... ++.+ ...
T Consensus 116 AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~---~~~ 192 (1051)
T KOG3513|consen 116 ASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFS---QEN 192 (1051)
T ss_pred eecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEe---ccc
Confidence 9999999887 7889888877776 66788999999999999996 478889999988765432 222 3333 333
Q ss_pred EEEEEcccCccCceeEEEEEEcCCc---ceEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEEEEE
Q psy7042 239 IIIFIKEIRKEDAGDYTVNLSNSSG---SVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE 315 (2245)
Q Consensus 239 ~~L~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~ 315 (2245)
+.|.|.++..+|.+.|.|.|.+..- .....+.|.+...-. .-.. +|......+
T Consensus 193 G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~----------------~~~~-~P~i~~~~p------- 248 (1051)
T KOG3513|consen 193 GNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNV----------------MREY-APKILVPFP------- 248 (1051)
T ss_pred ceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEccccc----------------cccc-CCccccCCC-------
Confidence 4799999999999999999998432 122234444411000 0000 000000000
Q ss_pred EEecCCCceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeE
Q psy7042 316 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVN 395 (2245)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~ 395 (2245)
. -.....|+.-.+.|.| .+.+.++
T Consensus 249 -----------------~----~~~a~~G~~v~LECfA-----------------------------------~G~P~P~ 272 (1051)
T KOG3513|consen 249 -----------------E----TETALKGQSVKLECFA-----------------------------------LGNPTPQ 272 (1051)
T ss_pred -----------------C----cccccCCCeEEEEEEe-----------------------------------cCCCCCc
Confidence 0 0112347777888888 3455668
Q ss_pred EEecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCC
Q psy7042 396 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 475 (2245)
Q Consensus 396 l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~ 475 (2245)
+.|.+.+ +.++.++ .........|.|.++..+|+|.|+|.|.|..|... ....+.+.
T Consensus 273 i~W~k~~---g~~~~~r---------------~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~---~~~~v~v~-- 329 (1051)
T KOG3513|consen 273 IKWRKVD---GKPPPRR---------------ATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT---HSGHVTVY-- 329 (1051)
T ss_pred EEEEeCC---CCCCCcc---------------eeeeccccEEEecccCcCCCeEEEEEEecccccce---eeEEEEEe--
Confidence 9999852 2122211 11222346799999999999999999999999532 44455544
Q ss_pred cccCCCceeccccccccccccceeeEEEEeccCcCeEEEEeCCeecCCCcc---EEEEeeCCeEEEEEecccccCCceEE
Q psy7042 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR---HHIFAEGDTYTLIINSVYGVDADEYV 552 (2245)
Q Consensus 476 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~ 552 (2245)
.+|.++..+++..+..|+++.|.|.+.|.|.|.++|+|||.++....+ +.+. .| .|+|.+++..|+|.|+
T Consensus 330 ---a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~-~g---~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 330 ---APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID-DG---TLIISNVQESDSGVYQ 402 (1051)
T ss_pred ---cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe-CC---EEEEEecccccCeEEE
Confidence 789999999999999999999999999999999999999999987666 4443 33 8999999999999999
Q ss_pred EEEEeCCCCCCcceeEeEecC-CCCCCCCCcccceEeeCCCeEEEEEeeeecCCCeEEEEeCCeEeeccCeEEEEecCCe
Q psy7042 553 CRAVNKGGVKSTKAELIIMTA-PKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERH 631 (2245)
Q Consensus 553 C~a~n~~g~~~~~~~l~v~~~-p~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 631 (2245)
|.|+|.+|...+++.|.|... |.+...| ......+..|.++.|.|...+.|.|.++|.+.+..+..++++.+..+
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~~P~f~~~p-~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~ed--- 478 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLASAPVFPLNP-VERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILED--- 478 (1051)
T ss_pred eeeecccceEeeeeEEEEEccCCCCCCCc-cceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCC---
Confidence 999999999999999999987 6665544 33446688899999999999999999999999997788888888654
Q ss_pred EEEEEcCCCCCcCEEEEEEEEeCCCCceeEEEEEeeCCCCCCCCCee-eeecCCcEEEEeeCCCCCCCccc-ccEEEEee
Q psy7042 632 AILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTV-EDIGHDSLALVWRAPIWDGGSNI-TNYIVEKR 709 (2245)
Q Consensus 632 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~si~lsW~~p~~~~~~~~-~~y~v~~~ 709 (2245)
++|.|.+++.+|.|.|+|.|.|..|.+...+.|.|.+++..-..+.- ......++.|.|+.- .|....+ ..+....+
T Consensus 479 GtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~s-hD~~ld~~f~W~~nG~ 557 (1051)
T KOG3513|consen 479 GTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEAS-HDPSLDITFTWKKNGR 557 (1051)
T ss_pred CcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecc-cCCCcceEEEEEECCE
Confidence 58999999999999999999999999999999999988754333322 223466777777732 1111111 11111111
Q ss_pred e---CCC-CCeEEEceeeeeeEEEecC--CCCCEEEEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCce
Q psy7042 710 E---HPM-SSWIRVGNTRFTTMAITGL--SPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKK 783 (2245)
Q Consensus 710 ~---~~~-~~w~~~~~~~~~~~~i~~L--~p~t~y~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (2245)
. .+. ...........-.++|.++ +....|.+++..
T Consensus 558 ~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT--------------------------------------- 598 (1051)
T KOG3513|consen 558 PIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQT--------------------------------------- 598 (1051)
T ss_pred EhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEE---------------------------------------
Confidence 0 001 1111111111123444443 333333333322
Q ss_pred eecccccccccCCceEEEEeeeccCccccccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhh
Q psy7042 784 IRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL 863 (2245)
Q Consensus 784 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (2245)
T Consensus 599 -------------------------------------------------------------------------------- 598 (1051)
T KOG3513|consen 599 -------------------------------------------------------------------------------- 598 (1051)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hheeeeeeeccCCCceEeecccccCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeec
Q psy7042 864 IRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDY 943 (2245)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~ 943 (2245)
..+.........+.++|.||.+|.+..+++++++|+|.+..+++ ++|..|.|+++..
T Consensus 599 ----------------------~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~-SpI~~Y~iq~rt~ 655 (1051)
T KOG3513|consen 599 ----------------------ALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNN-SPIEKYTIQFRTP 655 (1051)
T ss_pred ----------------------eecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCC-CCceEEeEEecCC
Confidence 11111111223456899999999999999999999999988766 5899999999999
Q ss_pred CCCceEEecceeee----ceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCC-CCCCCeeEeecCCeE
Q psy7042 944 NSTVWTKVSSYVTT----PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPG-APGAPKGVDSTEDSI 1018 (2245)
Q Consensus 944 ~~~~~~~~~~~~~~----~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~-~p~~~~~~~~~~~~v 1018 (2245)
....|+.+...+.. .+.++.+|.|...|+|||.|.|..|.|++|.+|+ ..+|.+++|. .|.++....-..+.+
T Consensus 656 ~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~--~~rT~ea~P~~~P~nv~g~g~~~~eL 733 (1051)
T KOG3513|consen 656 FPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSE--KVRTPEAAPSVNPSNVKGGGGSPTEL 733 (1051)
T ss_pred CCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCcc--ceecCCCCCccCCccccccCCCCceE
Confidence 99999988854432 2478999999999999999999999999998776 5577899999 899999999999999
Q ss_pred EEEecC-CCCCCCCccceEEEEEEecCCc-cceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccc
Q psy7042 1019 SLVWSK-PRHDGGSPIQRYIVEKRLISDD-KWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVT 1096 (2245)
Q Consensus 1019 ~l~W~~-p~~~~~~~i~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1096 (2245)
.|+|+| +....+++-.+|+|.|+..+.. .|....+..... ..++. ..+
T Consensus 734 vItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~--~~~V~----------------------------~~~ 783 (1051)
T KOG3513|consen 734 VITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQ--PRYVV----------------------------SNE 783 (1051)
T ss_pred EEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCC--ceEEE----------------------------cCC
Confidence 999999 4433335689999999999988 898876655432 22221 466
Q ss_pred cccCCcEEEEEEEEEecCCCCCCCCCCcceeecCCCCCCccccCCCceeEEEEcCCeEEEEEEeeecCCCcceEEeCCee
Q psy7042 1097 SLIENHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDE 1176 (2245)
Q Consensus 1097 ~L~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~~~~~~~l~~~~~~~p~~~v~W~~~g~~ 1176 (2245)
...+.+.|+++|+|+|..|.|+.+....+.....
T Consensus 784 st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed---------------------------------------------- 817 (1051)
T KOG3513|consen 784 STEPFTPYEVKVQAINDQGEGPESQVTVGYSGED---------------------------------------------- 817 (1051)
T ss_pred CCCCcceeEEEEEEecCCCCCCCCceEEEEcCCC----------------------------------------------
Confidence 6778999999999999999997553211111000
Q ss_pred cCCCCcEEEEEccceEEEEecCccccccceeEEEEEEcCCcceeEEEEEEEECCCCCCCCCceeeeccCCcEEEEecCCC
Q psy7042 1177 VSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPL 1256 (2245)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~a~n~~g~~~~s~~~~v~~~p~~p~~~~~~~~~~~~s~~l~W~~p~ 1256 (2245)
.++.+| ..+.+...+.+.+.|+|++|.
T Consensus 818 ----------------------------------------------------~P~~ap-~~~~~~~~s~s~~~v~W~~~~ 844 (1051)
T KOG3513|consen 818 ----------------------------------------------------EPPVAP-TKLSAKPLSSSEVNLSWKPPL 844 (1051)
T ss_pred ----------------------------------------------------CCCCCC-ccceeecccCceEEEEecCcC
Confidence 113333 347777888899999999999
Q ss_pred CCCCcceeeeEEEEeeccccc--eEEcccceecceEEecCCCCCceEEEEEEEeccccCCCCcccCCcccccCCCCCCCC
Q psy7042 1257 DDGGSPITNYVVEKYESATGF--WSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDP 1334 (2245)
Q Consensus 1257 ~~~g~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~s~~~~~~~~~~~~~~p~~ 1334 (2245)
.++|. +++|.|.|....++. -..+....+.++..|.||++.|.|.|.|+|+|.+|.|+++.....++. .+.|..
T Consensus 845 ~~nG~-l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~---k~pPs~ 920 (1051)
T KOG3513|consen 845 WDNGK-LTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTK---KAPPSQ 920 (1051)
T ss_pred ccCCc-cceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceecccc---CCCCcc
Confidence 88866 999999999886552 223335577889999999999999999999999998887664444222 233332
Q ss_pred ----CCCCeeeeccCCcEEEEeeC--CCCCCCccceeeEEEEecCC
Q psy7042 1335 ----PGQPQIVDWDTNNATLMWDR--PRTDGGSKIQGYKMLLKTPT 1374 (2245)
Q Consensus 1335 ----p~~~~~~~~~~~s~~l~W~~--p~~~~g~~i~~y~i~~~~~~ 1374 (2245)
|..-.+.......+.|.|.. +.. +-..+.+|.|.|+...
T Consensus 921 ~~~~p~g~~~~~~~~~~~~l~w~~v~~~~-nes~v~gYkV~~~~~~ 965 (1051)
T KOG3513|consen 921 VDIAPPGNFIWKFSASILLLLWLLVSAFE-NESEVGGYKVLYREDL 965 (1051)
T ss_pred cccCCCcceEEeeeeeEEEEEEeeEEEEe-ecccCcceEEEEeecc
Confidence 44444556677788999986 323 4445789999998654
No 3
>KOG4221|consensus
Probab=100.00 E-value=3.4e-70 Score=660.41 Aligned_cols=875 Identities=20% Similarity=0.317 Sum_probs=642.4
Q ss_pred eeeeeceEEECCCcc-----CCcEEEEEEEEcC-CCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEE
Q psy7042 40 YNVLECSFSVLNLVE-----GNDYEFRIIAVNA-IGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCE 113 (2245)
Q Consensus 40 ~~~~~~~l~i~~~~~-----~d~G~Y~C~a~n~-~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~ 113 (2245)
....+++|.|.++.. -|+|.|+|.|.-. .|...+. ++.+.+ ...+.|...+.+..+..|+++.|.|.
T Consensus 91 ~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr--~a~v~~-----a~~~~f~~~~~~~t~~~g~ta~f~c~ 163 (1381)
T KOG4221|consen 91 QLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSR--TAKVAL-----AGLADFALQPESTTLLYGQTALFSCE 163 (1381)
T ss_pred hhccCCceeEeeecccccccccCceEEEEEEccccceeecc--eEEEEe-----cccCccccCccceeEecCCcEEEEEE
Confidence 445678999999988 8999999999744 3333332 222222 46788999999999999999999999
Q ss_pred EeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccce-eEEEEEecCCC------ee
Q psy7042 114 ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAH-TSSRVKIGTPP------RI 186 (2245)
Q Consensus 114 ~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~P------~~ 186 (2245)
+.+.|.|.+.|.||+.++..++|+....+|. |.|.+++..|.|.|+|.|++..-... ..++|+|...| .|
T Consensus 164 vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~---L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~f 240 (1381)
T KOG4221|consen 164 VNAEPVPTIMWLKNDQPLPLDSRVIVLPSGA---LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVF 240 (1381)
T ss_pred EcCccCceeEEecccccccCCCcEEEcCCCc---EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceee
Confidence 9999999999999999999888887777774 99999999999999999998775443 47888887544 25
Q ss_pred ecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceE
Q psy7042 187 DRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 266 (2245)
Q Consensus 187 ~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 266 (2245)
...|.+..+.+|+.+.|.|.+.|.|.|.|.|.|||..|..+. +++...+ ...|.|.+++.+|+|.|+|.|.|......
T Consensus 241 l~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC~Atn~~D~id 318 (1381)
T KOG4221|consen 241 LDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTCRATNTNDSID 318 (1381)
T ss_pred ecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEEEecCCCcccc
Confidence 677899999999999999999999999999999999998766 4444433 23689999999999999999999777777
Q ss_pred EEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEEEEEEEecCCCceEEeeeccCcceEEEcCCCCCCE
Q psy7042 267 GTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQE 346 (2245)
Q Consensus 267 ~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 346 (2245)
+.+.|+|..+|..+.
T Consensus 319 asaev~V~a~P~~~~----------------------------------------------------------------- 333 (1381)
T KOG4221|consen 319 ASAEVTVLAPPGFTK----------------------------------------------------------------- 333 (1381)
T ss_pred cceEEEEEcCCCCCC-----------------------------------------------------------------
Confidence 788888876654321
Q ss_pred EEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeEEEecCCCCCCCCCccEEEEEeeecCCCCcEE
Q psy7042 347 YLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQR 426 (2245)
Q Consensus 347 ~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (2245)
T Consensus 334 -------------------------------------------------------------------------------- 333 (1381)
T KOG4221|consen 334 -------------------------------------------------------------------------------- 333 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCCcccCCCceeccccccccccccceeeEEEEec
Q psy7042 427 VNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITG 506 (2245)
Q Consensus 427 ~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g 506 (2245)
.+.+....++.++.|.|.+.|
T Consensus 334 -----------------------------------------------------------~p~~l~A~e~~die~ec~~~g 354 (1381)
T KOG4221|consen 334 -----------------------------------------------------------APTTLVAHESMDIEFECPVSG 354 (1381)
T ss_pred -----------------------------------------------------------CCcceeeeeccceeEeCCCCC
Confidence 122333445677889999999
Q ss_pred cCcCeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCCceEEEEEEeCCCCCCcceeEeEecCCCCCCCCCcc---
Q psy7042 507 CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR--- 583 (2245)
Q Consensus 507 ~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~p~~~--- 583 (2245)
.|.+.+.|+|+|..+.+++.+++...++ |+|..+-..|.|.|+|.+.|..|.....+.|.+...|.+.....+.
T Consensus 355 ~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap 431 (1381)
T KOG4221|consen 355 KPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAP 431 (1381)
T ss_pred CCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCC
Confidence 9999999999999999988887776664 8888889999999999999999999999999877665443222211
Q ss_pred cceEeeCCCeEEEEEeee-----ecCCCeEEEEeCCeEeeccCeEEEEecCCeEEEEEcCCCCCcCEEEEEEEEeCCCCc
Q psy7042 584 DTAYFDKGENVVVKIPFT-----GYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMD 658 (2245)
Q Consensus 584 ~~~~~~~g~~~~l~C~~~-----g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~ 658 (2245)
..+.+..-....+.|.+. +.+.+.++|+............. ..+......+.++++...|.++|.|.|..|+.
T Consensus 432 ~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~--tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g 509 (1381)
T KOG4221|consen 432 RDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQN--TSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSG 509 (1381)
T ss_pred cceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhhee--ccCCceEEEeeecccceeEEEEEeccCcccCC
Confidence 223344445555666654 33445788876433222111111 11222678899999999999999999999999
Q ss_pred eeEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEceeeeeeEEEecCCCCCEE
Q psy7042 659 SAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQY 738 (2245)
Q Consensus 659 ~~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~L~p~t~y 738 (2245)
..+..|.|..+|.+|..+.+...+..++.+.|++|.+. +++|++|++.|.......|..+..+ ..+++|.+|.++|.|
T Consensus 510 ~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~-n~~I~~yk~~ys~~~~~~~~~~~~n-~~e~ti~gL~k~TeY 587 (1381)
T KOG4221|consen 510 ESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFG-NGPITGYKLFYSEDDTGKELRVENN-ATEYTINGLEKYTEY 587 (1381)
T ss_pred ccCCceEEecCCCCCccccccccCcceEEEEecCCCCC-CCCceEEEEEEEcCCCCceEEEecC-ccEEEeecCCCccce
Confidence 99999999999987777888899999999999988654 5599999999998877777766544 478999999999999
Q ss_pred EEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeecccccccccCCceEEEEeeeccCccccccccce
Q psy7042 739 EFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSV 818 (2245)
Q Consensus 739 ~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (2245)
.|+|.|.|..|.|..|....+.+.
T Consensus 588 ~~~vvA~N~~G~g~sS~~i~V~Tl-------------------------------------------------------- 611 (1381)
T KOG4221|consen 588 SIRVVAYNSAGSGVSSADITVRTL-------------------------------------------------------- 611 (1381)
T ss_pred EEEEEEecCCCCCCCCCceEEEec--------------------------------------------------------
Confidence 999999999999887775444332
Q ss_pred ecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcceEEEEEE
Q psy7042 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEV 898 (2245)
Q Consensus 819 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2245)
T Consensus 612 -------------------------------------------------------------------------------- 611 (1381)
T KOG4221|consen 612 -------------------------------------------------------------------------------- 611 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCC-CCcccEEeeeeCceEEEEecCCCC-CCCCccceEEEeeeecCCCceE-EecceeeeceEEEecCCCCceeeEEE
Q psy7042 899 LDRPH-PPENLHADEFAGDSLTLYWTPPRD-NGGSEITNYVVEKKDYNSTVWT-KVSSYVTTPFVRVRNLAIGSTYEFRV 975 (2245)
Q Consensus 899 ~~~P~-~p~~l~~~~~~~~~~~l~W~~p~~-~~g~~i~~y~i~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~y~~~v 975 (2245)
.+.|+ ||.|+++...++++++|+|.+|.. ..+..+.+|.|+|+........ ......+..++.+.+|+|++.|.|+|
T Consensus 612 sd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrI 691 (1381)
T KOG4221|consen 612 SDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRI 691 (1381)
T ss_pred cCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEE
Confidence 24555 666699999999999999998742 2234999999999965444322 22233367788999999999999999
Q ss_pred EEEeccccCCCccccCcccccCCC-----CCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEEEecCCcccee
Q psy7042 976 MAENQYGLSKPALTIDPIKAKHPF-----DVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIK 1050 (2245)
Q Consensus 976 ~a~n~~g~~~~s~~~~~~~~~t~~-----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~ 1050 (2245)
.|.|..|.|+++. ...+.|+. .+|.+|..+.+. ....++.+.|.||.+++.. +.+|+|.|+.-.+.. .
T Consensus 692 sa~t~nGtGpaS~---w~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~~~-vrgY~ig~r~g~~~p--~ 764 (1381)
T KOG4221|consen 692 SAMTVNGTGPASE---WVSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPNIV-VRGYKIGYRPGSGIP--D 764 (1381)
T ss_pred EEeccCCCCCccc---ceeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChhhh-hcceEEeeecccCCC--C
Confidence 9999999999984 44444443 344455544443 4568899999999988654 899999997322111 0
Q ss_pred ccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCCCCCCCCCCcceeecC
Q psy7042 1051 ASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMCCA 1130 (2245)
Q Consensus 1051 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~~~~ 1130 (2245)
.....++..... |.|+.|.++..|.++++|.|..|.|.+......+....
T Consensus 765 ~~tIrl~~~~s~------------------------------y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~ 814 (1381)
T KOG4221|consen 765 TGTIRLDEKVSY------------------------------YNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSAT 814 (1381)
T ss_pred CccEEecceeeE------------------------------EEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCC
Confidence 011111222211 36999999999999999999999998877654443211
Q ss_pred CCCCCccccCCCceeEEEEcCCeEEEEEEeeec-----CCCc--ceEEeCCeecCCCCcEEEEEccceEEEEecCccccc
Q psy7042 1131 PPCAPKITSDLSIRDMTVLAGEEFTITVPFSGR-----PKPT--PIWTVNGDEVSPDGRIKFETSENQTIYRNKSAKRAT 1203 (2245)
Q Consensus 1131 ~p~~p~~~~~~~~~~~~v~~~~~~~l~~~~~~~-----p~~~--v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1203 (2245)
-+..|.-..-..+..+.....+...+.|.|.+. +... ++|...+..-. ..+.+. ..+.....+..+ .
T Consensus 815 ~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~--~~~~~~-~~t~ls~~v~gl---k 888 (1381)
T KOG4221|consen 815 DPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIRNG--TLYRYD-NSTDLSYLVGGL---K 888 (1381)
T ss_pred CcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEEEEEeecccccc--eeEEEe-cccccceeccCc---C
Confidence 111110001122344566667788899999763 2222 44543333222 222221 223333444443 6
Q ss_pred cceeEEEEEEcCC-c--ceeEEEEEEEEC---CCCCCCCCceeeecc-CCcEEEEecCCCCCCCcceeeeEEEEeec---
Q psy7042 1204 DSGSYTIQLVNTV-G--SDSASCKVYVVD---KPSPPQGPLDVSDIT-PESCSLSWKPPLDDGGSPITNYVVEKYES--- 1273 (2245)
Q Consensus 1204 ~~~~Y~~~a~n~~-g--~~~~s~~~~v~~---~p~~p~~~~~~~~~~-~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~--- 1273 (2245)
+...|..-+.... | .+.++..+.+.+ .|..||.++.+.... +.++.+.|.||..++|. |..|.++|...
T Consensus 889 pnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e~nG~-I~~Yii~Ys~~~n~ 967 (1381)
T KOG4221|consen 889 PNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTEPNGE-ITEYIIYYSTDGNT 967 (1381)
T ss_pred cCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCCccccccCCCcCCCCc-eeeEEEEEecCCCC
Confidence 6666654442222 2 234444444433 466666777766554 78999999999998888 99999988765
Q ss_pred cccceEEcccceecceEEecCCCCCceEEEEEEEeccccCCCCc
Q psy7042 1274 ATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPL 1317 (2245)
Q Consensus 1274 ~~~~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~s 1317 (2245)
....|......++..+..+.+|.+++.|.|+++|.|..|.|+-+
T Consensus 968 ~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s 1011 (1381)
T KOG4221|consen 968 PEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFS 1011 (1381)
T ss_pred chhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCCccc
Confidence 34578888788888899999999999999999999999999533
No 4
>KOG4221|consensus
Probab=100.00 E-value=9e-67 Score=630.86 Aligned_cols=874 Identities=22% Similarity=0.353 Sum_probs=645.8
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeee--cCCceEEEECCeeccCC--CeEEEEEcCcEEEEEEeeecc-----CCCeE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGT--PVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVTD-----VDNGD 160 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~--p~~~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~-----~d~G~ 160 (2245)
+-.|...|++. .+|.++.|.|..... +.+.|.|.|||..+... .+.+...+|. |.|.++.. -|.|.
T Consensus 41 ~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgS---l~i~~v~~~kh~~~~eg~ 115 (1381)
T KOG4221|consen 41 PLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGS---LYISSVLASKHNKVDEGV 115 (1381)
T ss_pred cceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCc---eeEeeecccccccccCce
Confidence 44566667643 899999999998543 36789999999987743 4555555554 77888876 79999
Q ss_pred EEEEEEcC-ccc-ceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCe
Q psy7042 161 YTCEAYNS-VGF-AHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDY 238 (2245)
Q Consensus 161 Y~C~a~n~-~g~-~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~ 238 (2245)
|+|.|+-. .|. .+..+.|.+...+.+...+.+..+..|+++-|+|.+.+.|.|.++|.||..++..+.++.....+
T Consensus 116 Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG-- 193 (1381)
T KOG4221|consen 116 YQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSG-- 193 (1381)
T ss_pred EEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCC--
Confidence 99999965 454 44588899999999999999999999999999999999999999999999988877765554444
Q ss_pred EEEEEcccCccCceeEEEEEEcCCcc-eEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEEEEEEE
Q psy7042 239 IIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERR 317 (2245)
Q Consensus 239 ~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~~~ 317 (2245)
.|.|.++++.|.|.|+|.+++..-. .+..+.|+|..-|...
T Consensus 194 -~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~------------------------------------- 235 (1381)
T KOG4221|consen 194 -ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGAL------------------------------------- 235 (1381)
T ss_pred -cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccc-------------------------------------
Confidence 6999999999999999999987532 3556666664211000
Q ss_pred ecCCCceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeEEE
Q psy7042 318 DISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLS 397 (2245)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~l~ 397 (2245)
T Consensus 236 -------------------------------------------------------------------------------- 235 (1381)
T KOG4221|consen 236 -------------------------------------------------------------------------------- 235 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCCcc
Q psy7042 398 WDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMA 477 (2245)
Q Consensus 398 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~ 477 (2245)
T Consensus 236 -------------------------------------------------------------------------------- 235 (1381)
T KOG4221|consen 236 -------------------------------------------------------------------------------- 235 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeccccccccccccceeeEEEEeccCcCeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCCceEEEEEEe
Q psy7042 478 AKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 557 (2245)
Q Consensus 478 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 557 (2245)
..-.|+..+.+..+.+|+++.|.|.+.|.|.|+|.|.|+|..|.-+. +++...+ ...|.|.+++.+|+|.|+|+|+|
T Consensus 236 -~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~g-~~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 236 -NKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLVG-GSSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred -cceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEec-ccceEEeccccccCceEEEEecC
Confidence 00013344556778899999999999999999999999999988766 3333222 22799999999999999999999
Q ss_pred CCCCCCcceeEeEecCCCCCCCCCcccceEeeCCCeEEEEEeeeecCCCeEEEEeCCeEeeccCeEEEEecCCeEEEEEc
Q psy7042 558 KGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIR 637 (2245)
Q Consensus 558 ~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~ 637 (2245)
......+.++|+|..+|.+...| ......++..+.|.|.+.|.|.+.+.|+|||..+..+..+++..... |.|.
T Consensus 313 ~~D~idasaev~V~a~P~~~~~p---~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIl 386 (1381)
T KOG4221|consen 313 TNDSIDASAEVTVLAPPGFTKAP---TTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRIL 386 (1381)
T ss_pred CCcccccceEEEEEcCCCCCCCC---cceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCC---cEEE
Confidence 88888899999999999988766 34667789999999999999999999999999888777777665442 8888
Q ss_pred CCCCCcCEEEEEEEEeCCCCceeEEEEEeeCC---------CCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEe
Q psy7042 638 DASNVDTAPYRVVAENDLGMDSAIVKIQISDR---------PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEK 708 (2245)
Q Consensus 638 ~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~---------P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~ 708 (2245)
.+-..|.|.|.|.|+|+.|...+.+.+.+... |.+|..+.+.....+.++++|.+|. ..++.+..|.+.|
T Consensus 387 gi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~ 465 (1381)
T KOG4221|consen 387 GIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFY 465 (1381)
T ss_pred EEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEE
Confidence 88899999999999999999988888755433 4556677777889999999999776 7777999999999
Q ss_pred eeCCCCCe--EEEceeeeeeEEEecCCCCCEEEEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeec
Q psy7042 709 REHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRG 786 (2245)
Q Consensus 709 ~~~~~~~w--~~~~~~~~~~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 786 (2245)
.......- ....... ...++.+|+|.+.|.|||.|.|..|.+..+..+.+.+
T Consensus 466 ~~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t------------------------- 519 (1381)
T KOG4221|consen 466 KVEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTT------------------------- 519 (1381)
T ss_pred ecCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEec-------------------------
Confidence 86543221 1222333 7888999999999999999999999998887555433
Q ss_pred ccccccccCCceEEEEeeeccCccccccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhhe
Q psy7042 787 KADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK 866 (2245)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (2245)
T Consensus 520 -------------------------------------------------------------------------------- 519 (1381)
T KOG4221|consen 520 -------------------------------------------------------------------------------- 519 (1381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeccCCCceEeecccccCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCC
Q psy7042 867 EIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST 946 (2245)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~ 946 (2245)
.|++|..+.+...+...+.+.|++|...+| +|++|++.|...+.+
T Consensus 520 ----------------------------------~pEgp~~~~a~ats~~ti~v~WepP~~~n~-~I~~yk~~ys~~~~~ 564 (1381)
T KOG4221|consen 520 ----------------------------------QPEGPVQLQAYATSPTTILVTWEPPPFGNG-PITGYKLFYSEDDTG 564 (1381)
T ss_pred ----------------------------------CCCCCccccccccCcceEEEEecCCCCCCC-CceEEEEEEEcCCCC
Confidence 333333366667778899999999988776 999999999988677
Q ss_pred ceEEecceeeeceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCCC-CCCCeeEeecCCeEEEEecCC
Q psy7042 947 VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGA-PGAPKGVDSTEDSISLVWSKP 1025 (2245)
Q Consensus 947 ~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~~-p~~~~~~~~~~~~v~l~W~~p 1025 (2245)
.|..+. .+...++|.+|.++|.|.|+|.|.|..|.|..+ ..+.+.|..+.|++ |.++++...++++|.|+|.+|
T Consensus 565 ~~~~~~--~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS---~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP 639 (1381)
T KOG4221|consen 565 KELRVE--NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSS---ADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPP 639 (1381)
T ss_pred ceEEEe--cCccEEEeecCCCccceEEEEEEecCCCCCCCC---CceEEEeccCCCCCCCcceEEEecCCCeEEEEccCC
Confidence 665544 466789999999999999999999999999877 67888999999994 555999999999999999996
Q ss_pred CC--CCCCccceEEEEEEecCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcE
Q psy7042 1026 RH--DGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHE 1103 (2245)
Q Consensus 1026 ~~--~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~ 1103 (2245)
.. .++ .|.+|+|+|+....+...+..+. ++...+ |.+.+|+|++.
T Consensus 640 ~~~t~ng-~itgYkIRy~~~~~~~~~~~t~v----------------------~~n~~~----------~l~~~Lep~T~ 686 (1381)
T KOG4221|consen 640 PSETQNG-QITGYKIRYRKLSREDEVNETVV----------------------KGNTTQ----------YLFNGLEPNTQ 686 (1381)
T ss_pred Ccccccc-eEEEEEEEecccCcccccceeec----------------------ccchhh----------hHhhcCCCCce
Confidence 54 444 48999999986554332211111 111122 25889999999
Q ss_pred EEEEEEEEecCCCCCCCCCCcceeecCCCCCCccccCCCceeEEEEcCCeEEEEEEeeecCCCc-------ceEEeCCee
Q psy7042 1104 YEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPT-------PIWTVNGDE 1176 (2245)
Q Consensus 1104 Y~~~v~A~n~~G~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~~~~~~~l~~~~~~~p~~~-------v~W~~~g~~ 1176 (2245)
|.|++.|.|..|.|++|.+...-|...-+.. .....+..+.+..+ ...|.+.|...+.+. +.|. .|..
T Consensus 687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e---~vp~~ps~l~~~~g-~~si~vsW~Pp~~~~~~vrgY~ig~r-~g~~ 761 (1381)
T KOG4221|consen 687 YRVRISAMTVNGTGPASEWVSAETPESDLDE---RVPGKPSELHVHPG-SNSIVVSWTPPPHPNIVVRGYKIGYR-PGSG 761 (1381)
T ss_pred EEEEEEEeccCCCCCcccceeccCccccccc---cCCCCCceeeeccC-ceeEEEEeCCCCChhhhhcceEEeee-cccC
Confidence 9999999999999999987776665433222 22233444555444 447888998777662 3332 2333
Q ss_pred cCCCCcEEEEEccceEEEEecCccccccceeE--EEEEEcCCcceeEEEEE-EEEC--C-------CCCCCCCceeeecc
Q psy7042 1177 VSPDGRIKFETSENQTIYRNKSAKRATDSGSY--TIQLVNTVGSDSASCKV-YVVD--K-------PSPPQGPLDVSDIT 1244 (2245)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~a~n~~g~~~~s~~~-~v~~--~-------p~~p~~~~~~~~~~ 1244 (2245)
+..-..+.+ ....+.+.+.. |++...| ++.|+|..|.+...... .... . |..|+.-......+
T Consensus 762 ~p~~~tIrl--~~~~s~y~l~~---Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S 836 (1381)
T KOG4221|consen 762 IPDTGTIRL--DEKVSYYNLEQ---LEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALS 836 (1381)
T ss_pred CCCCccEEe--cceeeEEEEEe---cccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccc
Confidence 332222222 23344444433 4777777 55779999988655433 3331 1 22233336666778
Q ss_pred CCcEEEEecCCCCCCCcceeeeEEEEee--ccccceEEcccceecceEEecCCCCCceEEEEEEEeccccCCCCcccCCc
Q psy7042 1245 PESCSLSWKPPLDDGGSPITNYVVEKYE--SATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLELDNS 1322 (2245)
Q Consensus 1245 ~~s~~l~W~~p~~~~g~~i~~Y~v~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~s~~~~~ 1322 (2245)
.++|.+.|..-.+. -.+...|+|.|.. ..++.... .......++.+.+|+|++.|.|-|.+.-..+.+.. .+..
T Consensus 837 ~tsI~v~w~~~~~~-t~~~~~yTVr~~~~gi~~~~~~~-~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~st--wsms 912 (1381)
T KOG4221|consen 837 STSIRVTWADNKDQ-TTDNRIYTVRWSLTGIRNGTLYR-YDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRREST--WSMS 912 (1381)
T ss_pred cceEEEEEecCCCc-cccceEEEEEEeecccccceeEE-EecccccceeccCcCcCChhhhhhhhhhccCcCCc--ccce
Confidence 89999999863111 2347789999862 22332222 23455678999999999999999988753333221 1222
Q ss_pred ccccCCCCCC-CCCCCCeeeec-cCCcEEEEeeCCCCCCCccceeeEEEEec
Q psy7042 1323 ITAKFPFTVP-DPPGQPQIVDW-DTNNATLMWDRPRTDGGSKIQGYKMLLKT 1372 (2245)
Q Consensus 1323 ~~~~~~~~~p-~~p~~~~~~~~-~~~s~~l~W~~p~~~~g~~i~~y~i~~~~ 1372 (2245)
+...+....| .+|.++.+..- ...++.+.|.+|.+.+| .|..|.|.|..
T Consensus 913 v~~~tle~~P~sPP~d~tv~p~e~P~~v~v~WqPp~e~nG-~I~~Yii~Ys~ 963 (1381)
T KOG4221|consen 913 VENRTLELVPSSPPRDLTVQPDEKPTTVIVHWQPPTEPNG-EITEYIIYYST 963 (1381)
T ss_pred eeeeecccCCCCCChhceecccCCCCccccccCCCcCCCC-ceeeEEEEEec
Confidence 3333333444 36677776643 36889999999999998 89999999974
No 5
>KOG4222|consensus
Probab=100.00 E-value=1.4e-51 Score=496.56 Aligned_cols=760 Identities=24% Similarity=0.352 Sum_probs=547.2
Q ss_pred cCCCCCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCC---eEEEEEcCcEEEEEEeee--ccCCCeE
Q psy7042 86 VGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA---RYRVETAGGVFRLHFNEV--TDVDNGD 160 (2245)
Q Consensus 86 ~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~~--~~~d~G~ 160 (2245)
....+|.|+..|.+..+..|+.++|.|+++|.|+|+|+|+|+|.....+. .-.+..++..+.|.+..- -.+|.|.
T Consensus 27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~ 106 (1281)
T KOG4222|consen 27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGV 106 (1281)
T ss_pred cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCce
Confidence 34579999999999999999999999999999999999999997554322 222334454444443321 2349999
Q ss_pred EEEEEEcCccccee-EEEEEecCCC-eeecCCCceEEcCCCeEEEEEEE-ecCCCceEEEeeCceeeecCCc-eEEEEeC
Q psy7042 161 YTCEAYNSVGFAHT-SSRVKIGTPP-RIDRMPNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDR-FKFTVLD 236 (2245)
Q Consensus 161 Y~C~a~n~~g~~~~-~~~l~V~~~P-~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~-~~~~~~~ 236 (2245)
|+|.|+|..|.+.+ .+.|.|...+ .|...|.++.+..|+.+.|+|.- .|.|.|.+.|.|||+++..... ......+
T Consensus 107 y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisg 186 (1281)
T KOG4222|consen 107 YSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISG 186 (1281)
T ss_pred eEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecC
Confidence 99999999998877 4556665443 46777888999999999999994 6899999999999999873322 2222222
Q ss_pred CeEEEEEcccCccCceeEEEEEEcCCcc-eEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEEEEE
Q psy7042 237 DYIIIFIKEIRKEDAGDYTVNLSNSSGS-VSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVE 315 (2245)
Q Consensus 237 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~ 315 (2245)
+.|.|.+++..|+|.|.|+|.|.+|. .+..++|+|.+.|.....+.....
T Consensus 187 --G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v--------------------------- 237 (1281)
T KOG4222|consen 187 --GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAV--------------------------- 237 (1281)
T ss_pred --CcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccccccee---------------------------
Confidence 36999999999999999999999987 467899999988854332211111
Q ss_pred EEecCCCceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeE
Q psy7042 316 RRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVN 395 (2245)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~ 395 (2245)
..+.+..|.|.+ .+++..+
T Consensus 238 --------------------------~~g~~~~f~c~v-----------------------------------~GdP~P~ 256 (1281)
T KOG4222|consen 238 --------------------------LVGAAAEFDCRV-----------------------------------GGDPQPT 256 (1281)
T ss_pred --------------------------eccccccccccc-----------------------------------CCCCCCc
Confidence 122233344433 3344557
Q ss_pred EEecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCC
Q psy7042 396 LSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDP 475 (2245)
Q Consensus 396 l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~ 475 (2245)
+.|.+. ++..+..+|.+..+ ...|.|.+..+.|.|.|.|.|.|..|.-. ++...++.
T Consensus 257 Vrwkk~--~~~~P~~ry~i~~d----------------~qtl~i~r~tp~deg~y~C~a~n~vG~l~---asa~ltV~-- 313 (1281)
T KOG4222|consen 257 VRWKKD--DPSLPRSRYSILDD----------------TQTLRIDRVTPTDEGTYVCPAENLVGGLE---ASATLTVQ-- 313 (1281)
T ss_pred eeeecc--CCCCCccceeeeec----------------cccccccccCCCcccceeeeccccccccc---cccceEEe--
Confidence 788772 33444555544322 25688999999999999999999999765 44445544
Q ss_pred cccCCCceeccccccccccccceeeEEEEeccCcCeEEEEeCCeec--------CCCccEEEEeeCCeEEEEEecccccC
Q psy7042 476 MAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFAEGDTYTLIINSVYGVD 547 (2245)
Q Consensus 476 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~i--------~~~~~~~~~~~~~~~~L~i~~v~~~d 547 (2245)
.+|.|...+.+..+..|..++|.|.+.|+|.+.+.|.|.|... ..+.+..+...+ .|.|.++...|
T Consensus 314 ---apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d 387 (1281)
T KOG4222|consen 314 ---APPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSD 387 (1281)
T ss_pred ---cCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---Ccccccccccc
Confidence 6799999999999999999999999999999999999987542 223344444444 89999999999
Q ss_pred CceEEEEEEeCCCCCCcceeEeEecC------CC-CCCCCCcccceEeeCCCeEEEEEeeeecCCCeEEEEeCCeEeecc
Q psy7042 548 ADEYVCRAVNKGGVKSTKAELIIMTA------PK-FNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESG 620 (2245)
Q Consensus 548 ~G~Y~C~a~n~~g~~~~~~~l~v~~~------p~-~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~~~~ 620 (2245)
.|.|.|...+..|.....+.+.+... |. |..-+ .......+..+.|.|.+.+.|.+.+.|.+++..+...
T Consensus 388 ~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~---~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~ 464 (1281)
T KOG4222|consen 388 EGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGP---ANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP 464 (1281)
T ss_pred cceEeecccccccccccceeEEEEeeeccCCCCceeeecc---cccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence 99999999999988877666655432 11 21111 1244556999999999999999999999999877543
Q ss_pred C-eEEEEecCCeEEEEEcCCCCCcCEEEEEEEEeCCCCceeEEEEEeeC---------------CCCCCCCCeeeeecCC
Q psy7042 621 G-HFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISD---------------RPDPPQFPTVEDIGHD 684 (2245)
Q Consensus 621 ~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~---------------~P~~p~~~~~~~~~~~ 684 (2245)
. +..+ .....|+|.++...|.|.|+|.|.+..|+....+.|.|.+ .|.+|....+..+..+
T Consensus 465 d~~~s~---~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~ 541 (1281)
T KOG4222|consen 465 DSRISQ---QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRT 541 (1281)
T ss_pred Ccccce---eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCc
Confidence 3 2111 1246899999999999999999999999998888877742 3566777788899999
Q ss_pred cEEEEeeCCCCCCCcccccEEEEeee-CCCCCeEEEc-eeeeeeEEEecCCCCCEEEEEEEEEecccCCCCCCCCccEEe
Q psy7042 685 SLALVWRAPIWDGGSNITNYIVEKRE-HPMSSWIRVG-NTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITT 762 (2245)
Q Consensus 685 si~lsW~~p~~~~~~~~~~y~v~~~~-~~~~~w~~~~-~~~~~~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~~~~~~~~ 762 (2245)
++.++|.+....+..++..|++++.. .-...|.... ....+.+.|.+|+|...|.|.|+|.|..|.+.++..++.+.+
T Consensus 542 ~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrt 621 (1281)
T KOG4222|consen 542 SVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRT 621 (1281)
T ss_pred eEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCcccc
Confidence 99999997655677889999998876 4456787765 346688999999999999999999999999999998887776
Q ss_pred cCccccccccccccccCCCceeecccccccccCCceEEEEeeeccCccccccccceecccccccccccCceeEEEEeeec
Q psy7042 763 KDTFKKQIKKRQYDFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRER 842 (2245)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 842 (2245)
.++....
T Consensus 622 a~a~~~~------------------------------------------------------------------------- 628 (1281)
T KOG4222|consen 622 APADAAA------------------------------------------------------------------------- 628 (1281)
T ss_pred CCCChhh-------------------------------------------------------------------------
Confidence 6542200
Q ss_pred ccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEe
Q psy7042 843 KTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYW 922 (2245)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W 922 (2245)
+..+.+....++. ..++ .-.....+...+|.+.|
T Consensus 629 --------------a~ad~~k~~~~ls-------~~l~-------------------------~l~~~~~L~asslr~~w 662 (1281)
T KOG4222|consen 629 --------------AGADHQKVQRELS-------NELL-------------------------RLSNPNVLNASSLRLGW 662 (1281)
T ss_pred --------------hhhhHHHHHHhhc-------ccce-------------------------eeccccccchhheeeee
Confidence 0000000000000 0000 00111234678899999
Q ss_pred cCCCCCCCCccceEEEeeeecCC--CceEEecce-eeeceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCC
Q psy7042 923 TPPRDNGGSEITNYVVEKKDYNS--TVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPF 999 (2245)
Q Consensus 923 ~~p~~~~g~~i~~y~i~~~~~~~--~~~~~~~~~-~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~ 999 (2245)
..+...+-.-|.+|+|.|+.... ..|..+... .....+.+.+|.|++.|++.+.-....|..-....+....+.+.+
T Consensus 663 ~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e 742 (1281)
T KOG4222|consen 663 TKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLE 742 (1281)
T ss_pred eeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccc
Confidence 99876554579999999998655 244444433 355678999999999999999999887766555666777788888
Q ss_pred CCCC-CCCCCee---EeecCCeEEEEecCCCC-CCCCccceEEEEEEecCCccceeccccccCCcceeEEEEeecccccC
Q psy7042 1000 DVPG-APGAPKG---VDSTEDSISLVWSKPRH-DGGSPIQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIG 1074 (2245)
Q Consensus 1000 ~~p~-~p~~~~~---~~~~~~~v~l~W~~p~~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 1074 (2245)
..|+ +|.+++. -....+++.|+|.+|.. -..+.+.+|.|................. ....
T Consensus 743 ~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~--a~~~------------- 807 (1281)
T KOG4222|consen 743 EPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTN--ARTG------------- 807 (1281)
T ss_pred cCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCcccccccccccc--CCCC-------------
Confidence 8888 5666544 34556889999998543 2234578898876532211100000000 1111
Q ss_pred CccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCCCCCCCC
Q psy7042 1075 SERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSS 1121 (2245)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G~~~~s~ 1121 (2245)
..+|.+|.++..|.|+|.|.+.+|.|..+.
T Consensus 808 -----------------sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~ 837 (1281)
T KOG4222|consen 808 -----------------SVTIGNLVTGIAYSVTVAARTGAGVGVKSP 837 (1281)
T ss_pred -----------------ceEeccccccceEEEEEeeecCCccCCCCC
Confidence 116999999999999999999999998543
No 6
>KOG4222|consensus
Probab=100.00 E-value=9.6e-45 Score=437.81 Aligned_cols=753 Identities=24% Similarity=0.345 Sum_probs=513.9
Q ss_pred CCCeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCc--eEEEEe-CCeEEEEEccc--CccCceeEEE
Q psy7042 182 TPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDR--FKFTVL-DDYIIIFIKEI--RKEDAGDYTV 256 (2245)
Q Consensus 182 ~~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~--~~~~~~-~~~~~L~i~~~--~~~d~G~Y~C 256 (2245)
.+|.|...|.++.+..|+.++|.|.+.|.|+|.|+|||+|..+..... .++... +....|.+..- ...|.|.|+|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c 109 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC 109 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence 478999999999999999999999999999999999999975543322 222222 22222222211 1239999999
Q ss_pred EEEcCCcce-EEEEEEEEecCCCCCC-CCcccceeeccceEEEecCCCCCCCceeEEEEEEEEecCCCceEEeeeccCcc
Q psy7042 257 NLSNSSGSV-SGTFTINITGLPGPPI-GPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWICISTTCHDT 334 (2245)
Q Consensus 257 ~a~n~~g~~-~~~~~l~V~~~p~~~~-~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (2245)
.|.|..|.. +..+.|.|...+.-.. .+..+....+..+.+.+.||.
T Consensus 110 vasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~-------------------------------- 157 (1281)
T KOG4222|consen 110 VASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR-------------------------------- 157 (1281)
T ss_pred eecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCC--------------------------------
Confidence 999999874 5677777765443211 122233333333444433332
Q ss_pred eEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCCeeEEEecCCCCCCCCCccEEEE
Q psy7042 335 TFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGDFVNLSWDKPLDDGGSRIQGYWI 414 (2245)
Q Consensus 335 ~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~l~W~~~~~~~~~~~~~~~~ 414 (2245)
+.+...|+|.|++.... .|
T Consensus 158 -------------------------------------------------------ghpeptvSw~Kdg~pl~----~~-- 176 (1281)
T KOG4222|consen 158 -------------------------------------------------------GHPEPTVSWVKDGKPLD----HY-- 176 (1281)
T ss_pred -------------------------------------------------------CCCCCcceeecCCCccc----cc--
Confidence 22334677877533211 11
Q ss_pred EeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCCcccCCCceecccccccccc
Q psy7042 415 DKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQ 494 (2245)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~ 494 (2245)
....+.......|.|.++...|.|.|.|+|.|..|......+.+.|. .+|.|...+.+..+..
T Consensus 177 ----------~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-------e~P~f~~rp~~~~v~~ 239 (1281)
T KOG4222|consen 177 ----------DVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-------EKPWFWKRPKDLAVLV 239 (1281)
T ss_pred ----------cceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec-------cCCccccccccceeec
Confidence 11122333457799999999999999999999999887666665555 5699999999999999
Q ss_pred ccceeeEEEEeccCcCeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCCceEEEEEEeCCCCCCcceeEeEecCC
Q psy7042 495 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAP 574 (2245)
Q Consensus 495 g~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 574 (2245)
|..+.|.|.+.|.|.+.+.|.|++..+.. .++.+..+.. +|.|.++.+.|.|.|.|.|.|..|.....+.|+|+.+|
T Consensus 240 g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 240 GAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPP 316 (1281)
T ss_pred ccccccccccCCCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCc
Confidence 99999999999999999999997766654 4556655433 89999999999999999999999999999999999999
Q ss_pred CCCCCCCcccceEeeCCCeEEEEEeeeecCCCeEEEEeCCeEee--------ccCeEEEEecCCeEEEEEcCCCCCcCEE
Q psy7042 575 KFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIE--------SGGHFHVETSERHAILTIRDASNVDTAP 646 (2245)
Q Consensus 575 ~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 646 (2245)
.+...|... .+..|..++|.|.+.|.|+|.+.|.+.|.... ...+..+... .+|.|.+++..|.|.
T Consensus 317 ~f~kkp~dq---~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~---g~L~it~v~~~d~g~ 390 (1281)
T KOG4222|consen 317 SFGKKPRDQ---KVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPT---GTLTITNVRQSDEGY 390 (1281)
T ss_pred ccccccCcc---ccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCC---CCcccccccccccce
Confidence 998877643 36679999999999999999999999876331 2233333332 389999999999999
Q ss_pred EEEEEEeCCCCceeEEEEEeeCCC---CCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEce--
Q psy7042 647 YRVVAENDLGMDSAIVKIQISDRP---DPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN-- 721 (2245)
Q Consensus 647 y~C~a~n~~g~~~~~~~l~v~~~P---~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~-- 721 (2245)
|.|...+..|.......+.+.+.- .||..+...... ..+ | -++.....|...+.+.+...|.+.+-
T Consensus 391 Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~n-Qtl------~--v~s~a~l~c~atg~P~p~i~wl~dg~~v 461 (1281)
T KOG4222|consen 391 YVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPAN-QTL------P--VGSTASLPCSATGAPTPNISWLKDGCNV 461 (1281)
T ss_pred EeecccccccccccceeEEEEeeeccCCCCceeeecccc-ccc------c--cCcccccChhhhCCCCCCchhhhccccc
Confidence 999999999977544444432211 222222111110 000 1 13344556666666666666654431
Q ss_pred ---------eeeeeEEEecCCCCCEEEEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeeccccccc
Q psy7042 722 ---------TRFTTMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKADEKV 792 (2245)
Q Consensus 722 ---------~~~~~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 792 (2245)
.....+.+.+|+-.+.|.|.|.|.+..|++.++..+.+....... +
T Consensus 462 ~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~-------q------------------ 516 (1281)
T KOG4222|consen 462 MNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQ-------Q------------------ 516 (1281)
T ss_pred ccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCccc-------c------------------
Confidence 123577889999999999999999999998888755442111100 0
Q ss_pred ccCCceEEEEeeeccCccccccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeee
Q psy7042 793 SDYDQYVFDIYSKYVPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMN 872 (2245)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (2245)
..+|
T Consensus 517 -------------------------------------------~~r~--------------------------------- 520 (1281)
T KOG4222|consen 517 -------------------------------------------FCRC--------------------------------- 520 (1281)
T ss_pred -------------------------------------------cccC---------------------------------
Confidence 0000
Q ss_pred ccCCCceEeecccccCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeee-cCCCceEEe
Q psy7042 873 QLHHPKLINLHDAFEDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKD-YNSTVWTKV 951 (2245)
Q Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~-~~~~~~~~~ 951 (2245)
......|++|..-.+..+..+++.|+|.+....++.++.+|.|++.. .-...|...
T Consensus 521 -----------------------~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~t 577 (1281)
T KOG4222|consen 521 -----------------------EDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTT 577 (1281)
T ss_pred -----------------------CChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhccccccc
Confidence 00013566676677777889999999999877677799999997654 455678888
Q ss_pred cceeeeceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCCCC------------CCC---eeEeecCC
Q psy7042 952 SSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAP------------GAP---KGVDSTED 1016 (2245)
Q Consensus 952 ~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~~p------------~~~---~~~~~~~~ 1016 (2245)
......+.+.|.+|.|+..|.|.|+|.|..|-+.++..+..+..... +...+- ..+ ....++++
T Consensus 578 a~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a-~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~as 656 (1281)
T KOG4222|consen 578 AGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPA-DAAAAGADHQKVQRELSNELLRLSNPNVLNAS 656 (1281)
T ss_pred ccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCC-ChhhhhhhHHHHHHhhcccceeeccccccchh
Confidence 88888999999999999999999999999999888866654443211 111000 001 11246678
Q ss_pred eEEEEecCCCCCCCCccceEEEEEEecCC--ccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccc
Q psy7042 1017 SISLVWSKPRHDGGSPIQRYIVEKRLISD--DKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNR 1094 (2245)
Q Consensus 1017 ~v~l~W~~p~~~~~~~i~~y~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1094 (2245)
+|.+.|..+......-|.+|+|.|+..+. ..|....+.. ..... ..
T Consensus 657 slr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~--~t~~s------------------------------~v 704 (1281)
T KOG4222|consen 657 SLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTV--PTPES------------------------------VV 704 (1281)
T ss_pred heeeeeeeecccCcccccceEEEeccCccccccccccceec--cCCcc------------------------------ee
Confidence 99999998877555569999999997764 2233222211 11111 14
Q ss_pred cccccCCcEEEEEEEEEecCCC---CCCCCCCcceeecCCCCCCccccCCCceeEEEEcCCeEEEEEEeeecCCCcceEE
Q psy7042 1095 VTSLIENHEYEFRVCAVNAAGQ---GPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWT 1171 (2245)
Q Consensus 1095 i~~L~~~~~Y~~~v~A~n~~G~---~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~~~~~~~l~~~~~~~p~~~v~W~ 1171 (2245)
+.+|.+++.|+|.++-+...|. |..+....+.+..
T Consensus 705 ~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e------------------------------------------ 742 (1281)
T KOG4222|consen 705 VPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLE------------------------------------------ 742 (1281)
T ss_pred ccccCCCccceeeccCccCCCcceecCCcccccccccc------------------------------------------
Confidence 8999999999999887766443 2222222222222
Q ss_pred eCCeecCCCCcEEEEEccceEEEEecCccccccceeEEEEEEcCCcceeEEEEEEEECCCCCCCCC---ceeeeccCCcE
Q psy7042 1172 VNGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLVNTVGSDSASCKVYVVDKPSPPQGP---LDVSDITPESC 1248 (2245)
Q Consensus 1172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~a~n~~g~~~~s~~~~v~~~p~~p~~~---~~~~~~~~~s~ 1248 (2245)
.+|++|+.. +.......++.
T Consensus 743 ---------------------------------------------------------~~PSapp~~~~~~s~~~~n~Ta~ 765 (1281)
T KOG4222|consen 743 ---------------------------------------------------------EPPSAPPQGVQHVSKGSYNGTAG 765 (1281)
T ss_pred ---------------------------------------------------------cCCCCCCCCccccccccCCCcee
Confidence 234444443 23333456778
Q ss_pred EEEecCCCCC-CCcceeeeEEEEeecccc-ceEEcccceecceEEecCCCCCceEEEEEEEeccccCCCCcc
Q psy7042 1249 SLSWKPPLDD-GGSPITNYVVEKYESATG-FWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1318 (2245)
Q Consensus 1249 ~l~W~~p~~~-~g~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~s~ 1318 (2245)
.|+|.+|.+. ....+.+|.|........ .......+....+.+|.+|.+++.|.|+|.|.|.+|.|..+.
T Consensus 766 ~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~ 837 (1281)
T KOG4222|consen 766 SVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSP 837 (1281)
T ss_pred eEEecCCcccccCCcccceeEEeecCccccccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCC
Confidence 8999987543 233488998875443311 112223456677899999999999999999999999987443
No 7
>KOG4194|consensus
Probab=99.95 E-value=1.6e-27 Score=268.92 Aligned_cols=284 Identities=21% Similarity=0.408 Sum_probs=225.7
Q ss_pred CCCCCceecCCcceEEeCCCeEEEEEEEee--ecCCceEEEECCeeccCC-----CeEEEEEcC--------cEEEEEEe
Q psy7042 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATG--TPVPKCRWLRNGREISSG-----ARYRVETAG--------GVFRLHFN 151 (2245)
Q Consensus 87 ~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g--~p~~~i~W~~~g~~l~~~-----~~~~~~~~~--------~~~~L~i~ 151 (2245)
...+|.|...|.++.+..|+.++|+|.+.+ ..+..+.|.+++.....- .++--...+ -...|.+.
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 356899999999999999999999999966 345579999988743311 111111101 12369999
Q ss_pred eeccCCCeEEEEEEEcCccccee-EEEEEecCCCeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCcee-eecCCc
Q psy7042 152 EVTDVDNGDYTCEAYNSVGFAHT-SSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRV-VQSDDR 229 (2245)
Q Consensus 152 ~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~-l~~~~~ 229 (2245)
+|+..|+|.|+|+++|..|+.-+ .+.|+|...|.|...|.++.+..|+.+.|.|.++|.|.|+|.|.|+|.. .+....
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARE 659 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhh
Confidence 99999999999999999998776 8899999999999999999999999999999999999999999998866 333222
Q ss_pred eEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCcee
Q psy7042 230 FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKV 309 (2245)
Q Consensus 230 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~ 309 (2245)
.++......-.+.|.|+..+|.|.|+|.|.|.+|..+..++|+|.+.|.
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~------------------------------- 708 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPS------------------------------- 708 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCc-------------------------------
Confidence 2333322223789999999999999999999999999999999976543
Q ss_pred EEEEEEEEecCCCceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEee
Q psy7042 310 THYVVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQV 389 (2245)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~ 389 (2245)
T Consensus 709 -------------------------------------------------------------------------------- 708 (873)
T KOG4194|consen 709 -------------------------------------------------------------------------------- 708 (873)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeeEEEecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCc
Q psy7042 390 GGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNS 469 (2245)
Q Consensus 390 ~~~~~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~ 469 (2245)
T Consensus 709 -------------------------------------------------------------------------------- 708 (873)
T KOG4194|consen 709 -------------------------------------------------------------------------------- 708 (873)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCcccCCCceeccccccccccccceeeEEEEeccCc-CeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCC
Q psy7042 470 VQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK-PTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDA 548 (2245)
Q Consensus 470 v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~ 548 (2245)
+..++.+..+..|+++.|.|.+.+.|. |.+.|+|+++++.-..+......+ ..|.+.+...+|+
T Consensus 709 -------------f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~d--Qllvv~~~~~~da 773 (873)
T KOG4194|consen 709 -------------FSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGD--QLLVVKENLVEDA 773 (873)
T ss_pred -------------ccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCC--eEEEEEehhhhhc
Confidence 222344667788999999999999887 999999999998766655544333 3788899999999
Q ss_pred ceEEEEEEeCCCCCCcceeEeEecCCCC
Q psy7042 549 DEYVCRAVNKGGVKSTKAELIIMTAPKF 576 (2245)
Q Consensus 549 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 576 (2245)
|.|+|...|..|.......+.+...+..
T Consensus 774 G~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 774 GIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred ceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 9999999999988877766666655443
No 8
>KOG4194|consensus
Probab=99.94 E-value=1.2e-26 Score=261.83 Aligned_cols=255 Identities=20% Similarity=0.336 Sum_probs=208.7
Q ss_pred Eeeeccc--ceEEEEEEeecCCc-----------ceEEe-----cceeeeeceEEECCCccCCcEEEEEEEEcCCCCCCC
Q psy7042 12 YYCEIIV--DDCYIIERREVGGA-----------IWLKC-----NDYNVLECSFSVLNLVEGNDYEFRIIAVNAIGKSEP 73 (2245)
Q Consensus 12 ~~~~~~~--~~~~~~~~~~~~~~-----------~w~~~-----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 73 (2245)
|.|.+-+ ++.-.|+||...+. .|-++ |......+.|.+.||...|+|+|+|+++|..|+..+
T Consensus 523 ftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStys 602 (873)
T KOG4194|consen 523 FTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYS 602 (873)
T ss_pred EEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchh
Confidence 5677755 55566777655442 22222 222234478999999999999999999999999876
Q ss_pred CCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCee-ccC--CCeEEEEEcCcEEEEEE
Q psy7042 74 SICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGRE-ISS--GARYRVETAGGVFRLHF 150 (2245)
Q Consensus 74 ~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~-l~~--~~~~~~~~~~~~~~L~i 150 (2245)
......+ ..+|.|+..|.+.++..|+.+.|.|.++|.|.|+|.|.|+|.. .+. ..|..+.+++.. +.|
T Consensus 603 qk~KltV-------~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~--f~I 673 (873)
T KOG4194|consen 603 QKAKLTV-------NQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDV--FFI 673 (873)
T ss_pred heeEEEe-------eccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCE--EEE
Confidence 5433322 3699999999999999999999999999999999999998865 543 235666666663 789
Q ss_pred eeeccCCCeEEEEEEEcCcccceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEecCCC-ceEEEeeCceeeecCCc
Q psy7042 151 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDR 229 (2245)
Q Consensus 151 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~i~W~~~g~~l~~~~~ 229 (2245)
.+++.+|+|.|+|.|.|..|..+..++|+|...|.+..+..+..|..|+++.|.|.+.|.|+ |.+.|+|++++|....+
T Consensus 674 tnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r 753 (873)
T KOG4194|consen 674 TNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER 753 (873)
T ss_pred ecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999887 99999999999876665
Q ss_pred eEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEecCC
Q psy7042 230 FKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINITGLP 277 (2245)
Q Consensus 230 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 277 (2245)
.... ++...|++.+...+|+|.|+|+..|..|....-..+.|...+
T Consensus 754 h~f~--d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 754 HTFP--DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred ccCC--CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 4332 344578899999999999999999999988777777776543
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.90 E-value=3.2e-22 Score=236.01 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=119.0
Q ss_pred eEEeCCCeEEEEEEE-----eeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee
Q psy7042 100 LVVPLGKLLTLQCEA-----TGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT 174 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~-----~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 174 (2245)
..+.+|+.+.|.|.+ .|.|.++|.|+|+|.... +......+. .|.|.++..+|+|.|+|.|.|..|....
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~--~l~i~~~~~~DsG~Y~C~a~N~~g~~~~ 110 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS--NMLILNPTQSDSGIYICITKNETYCDMM 110 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc--eEEEcccCcccCeEEEEEEECCCcceEE
Confidence 345679999999997 688999999999985322 222222232 3779999999999999999999998888
Q ss_pred EEEEEecC--CCeeecCCCceEEcCCCeEEEEEE-----EecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccC
Q psy7042 175 SSRVKIGT--PPRIDRMPNALYIPEGDNTKVKIF-----YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIR 247 (2245)
Q Consensus 175 ~~~l~V~~--~P~~~~~~~~~~v~~G~~~~l~C~-----~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~ 247 (2245)
+++|+|.. +|.+...+.+..+.+|..+.|.|. ..+.|++.|+|++++. + ...++... ....|.|.++.
T Consensus 111 s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~ 185 (326)
T PHA02785 111 SLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIEDVR 185 (326)
T ss_pred EEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec---CCCeEEEeecC
Confidence 88888854 334444455566789999999997 3467899999998753 2 23333221 22479999999
Q ss_pred ccCceeEEEEEEcCCcceEE
Q psy7042 248 KEDAGDYTVNLSNSSGSVSG 267 (2245)
Q Consensus 248 ~~d~G~Y~C~a~n~~g~~~~ 267 (2245)
.+|.|.|+|.|.|..|....
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~~ 205 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKTY 205 (326)
T ss_pred hhhCeEEEEEEEeccCCEEE
Confidence 99999999999998876543
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=3.4e-21 Score=227.38 Aligned_cols=242 Identities=17% Similarity=0.205 Sum_probs=166.6
Q ss_pred EEEEEeeecccceEEEEEEeecCCcceEEeccee------eeeceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEE
Q psy7042 8 TIRFYYCEIIVDDCYIIERREVGGAIWLKCNDYN------VLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVK 81 (2245)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~ 81 (2245)
.-.++.|+.... ........+..|+|++... ..+..|.|.+++.+|+|.|+|+|.|..|....+ ..+.
T Consensus 42 e~~~l~C~~~~~---~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s---~~L~ 115 (326)
T PHA02785 42 EPVILPCPQINT---LSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS---LNLT 115 (326)
T ss_pred CCEEEECCCccc---cccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE---EEEE
Confidence 346788886310 0001123446677765321 123468999999999999999999988765433 2233
Q ss_pred EeeccCCCCCceecCCcceEEeCCCeEEEEEE-----EeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccC
Q psy7042 82 ICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCE-----ATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDV 156 (2245)
Q Consensus 82 v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~-----~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 156 (2245)
|.. ..+|.+...+....+.+|..+.|.|. ..+.|+++|+|++++. + .+.++.....+ .|.|.+++.+
T Consensus 116 V~~---~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~---~L~i~~v~~~ 187 (326)
T PHA02785 116 IVS---VSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPG---IITIEDVRKN 187 (326)
T ss_pred EEe---cCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCC---eEEEeecChh
Confidence 322 12344443444456789999999997 3467889999998653 3 33455443322 5999999999
Q ss_pred CCeEEEEEEEcCccccee----EEEEEecC---CCeeecCCCceEEcCCCeEEEEEEEecCCC---ceEEEeeCceeeec
Q psy7042 157 DNGDYTCEAYNSVGFAHT----SSRVKIGT---PPRIDRMPNALYIPEGDNTKVKIFYAGDQP---MEVSLTKNGRVVQS 226 (2245)
Q Consensus 157 d~G~Y~C~a~n~~g~~~~----~~~l~V~~---~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~---~~i~W~~~g~~l~~ 226 (2245)
|+|.|+|.|.|..|.... .+.|.|.. ||.+ ..|..+.+..|+.++|.|.+.|.|. +.|.|+|||..|..
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 999999999998886543 34566643 4443 4567888889999999999999886 48999999998854
Q ss_pred CC-----ceEEEEe--------CCeEEEEEcccCccCceeEEEEEEcCCcc
Q psy7042 227 DD-----RFKFTVL--------DDYIIIFIKEIRKEDAGDYTVNLSNSSGS 264 (2245)
Q Consensus 227 ~~-----~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 264 (2245)
.. ++..... .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 267 DDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred cCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 32 2221110 01357999999999999999999998843
No 11
>KOG3515|consensus
Probab=99.84 E-value=2.3e-19 Score=218.35 Aligned_cols=645 Identities=14% Similarity=0.092 Sum_probs=369.3
Q ss_pred CCcceEEecceee------eeceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEe
Q psy7042 30 GGAIWLKCNDYNV------LECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVP 103 (2245)
Q Consensus 30 ~~~~w~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~ 103 (2245)
.+..|++.+...+ ....|...+...+..++|.|+|.|+.|....- .+.+.+ ..+|.-..........
T Consensus 38 ~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~----~~~l~v---~~~pa~~~~~~e~~~~ 110 (741)
T KOG3515|consen 38 IDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRC----PMILDV---DYPPACLPELGEIFQV 110 (741)
T ss_pred cceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceec----ceeecc---ccCccccccccchhhh
Confidence 3456777665443 45788899999999999999999985443221 122222 3456555555666778
Q ss_pred CCCeEEEEEEE--eeecCCceEEEECCeeccCCC--eEEEE--Ec----CcEEEEEEeeeccCCCeEEEEEEEcCc---c
Q psy7042 104 LGKLLTLQCEA--TGTPVPKCRWLRNGREISSGA--RYRVE--TA----GGVFRLHFNEVTDVDNGDYTCEAYNSV---G 170 (2245)
Q Consensus 104 ~G~~v~L~C~~--~g~p~~~i~W~~~g~~l~~~~--~~~~~--~~----~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g 170 (2245)
.+..+.+.|.+ .+.|.+.+.|..++....... +.... .. .....|++...+.+|.|.|+|.|.|.. +
T Consensus 111 ~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l 190 (741)
T KOG3515|consen 111 DKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGL 190 (741)
T ss_pred cCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccc
Confidence 89999999976 456788999999887654321 11111 00 112358899999999999999999853 3
Q ss_pred cceeEEEEEecCCCe---eecCCCceEEcCCCeEEEEEEEe-cCCCceEEEeeCceeeecCCceEEEEeC--CeEEEEEc
Q psy7042 171 FAHTSSRVKIGTPPR---IDRMPNALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVLD--DYIIIFIK 244 (2245)
Q Consensus 171 ~~~~~~~l~V~~~P~---~~~~~~~~~v~~G~~~~l~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~~--~~~~L~i~ 244 (2245)
..-....+.|..+.. +.....-....+|+.+.|.|.+. |+|.+.++||++.+.+...........+ ....+.+.
T Consensus 191 ~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~ 270 (741)
T KOG3515|consen 191 SFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLR 270 (741)
T ss_pred cccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCccccccccc
Confidence 333344555655432 22223336788999999999864 6999999999998877654211111111 12234444
Q ss_pred ccCccCceeEEEEEEcCCcceEEEEEEEEecCCCC-CCCCcccceeeccceEEEecCCCCCCCceeEEEEEEEEecCCCc
Q psy7042 245 EIRKEDAGDYTVNLSNSSGSVSGTFTINITGLPGP-PIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPH 323 (2245)
Q Consensus 245 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~-~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~ 323 (2245)
.-..++.-...|.|.|. + .....+.|..+|.. ++.+.......+.+..+.+.....+....+.||.-.........
T Consensus 271 ~~r~~~~~~~kc~a~n~-~--~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~ 347 (741)
T KOG3515|consen 271 VGRQDLQAQLKCKASNL-L--AASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQK 347 (741)
T ss_pred ccccchhhhhhccccCc-c--ccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccC
Confidence 44445555788999982 1 11222222222221 11111111222233333332222233344555541111111100
Q ss_pred -eE--EeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEe------------
Q psy7042 324 -WI--CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQ------------ 388 (2245)
Q Consensus 324 -~~--~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~------------ 388 (2245)
.. ...................+.+.+.|.|.+.......+..........+...-. ..+.+..
T Consensus 348 ~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~--~~~~v~~~e~d~~~~~~~~ 425 (741)
T KOG3515|consen 348 ASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVR--HKTAVVAMEQDHQAAPLPV 425 (741)
T ss_pred cccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhh--cccceeeccCccccccCcc
Confidence 00 000111122445556678899999999987763322221111111111111000 0011111
Q ss_pred -ecCCeeEEEecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCC
Q psy7042 389 -VGGDFVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSAS 467 (2245)
Q Consensus 389 -~~~~~~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~ 467 (2245)
.....-.+.|... .|.+... . ..............+.++...|.|.|.|.|.|..|... +.
T Consensus 426 ~~~p~~~~~~w~~~---------~~~~~~~----~--g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~---~~ 487 (741)
T KOG3515|consen 426 RGAPAERTFYWTFR---------LYKLSQV----D--GGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQ---AY 487 (741)
T ss_pred cCCCcccchhheec---------ceecccc----c--CceEEeeccccccccceeeeccCCcceeeeccCCCcee---eE
Confidence 1222233444432 1111110 0 11111222233344666888999999999999988643 11
Q ss_pred CcEEecCCcccCCCceeccccccccccccceeeEEEEeccCc--CeEEEEeCCeecCCCc--cEEEEeeCCeEEEEEecc
Q psy7042 468 NSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK--PTISWLKGSREITPSA--RHHIFAEGDTYTLIINSV 543 (2245)
Q Consensus 468 ~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~~~~~~i~~~~--~~~~~~~~~~~~L~i~~v 543 (2245)
+. ......|.+...........|+++.+.|.....+. -.+.|.+.+.+..... ............+.+...
T Consensus 488 ~~-----~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~ 562 (741)
T KOG3515|consen 488 LL-----LGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGN 562 (741)
T ss_pred Ee-----eccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeeccc
Confidence 11 11334555555555666777888999999877653 4689999887653211 111111222336777777
Q ss_pred cccCCceEEEEEEeCCCCCCcceeEeEecCCCCCCCCCcccceEeeCCCeEEEEEeeeecCCCeEEEEeCCeEeeccCeE
Q psy7042 544 YGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYPKPKITWYRDNEVIESGGHF 623 (2245)
Q Consensus 544 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~~~~~~~ 623 (2245)
....+|.|.|.+.+..-.......|.+..++.....+....... .....++..|.+.+.|.+.+.|.|+......+.++
T Consensus 563 ~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~-~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~ 641 (741)
T KOG3515|consen 563 SSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQ-EGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHI 641 (741)
T ss_pred ccccccceEEeecCCCCccccceEEEecccccccccCCceeeec-cCcccccccceecccccceeecccCCCcccCCceE
Confidence 77788999999988333344445555655555443333322221 12238899999999999999999988775544443
Q ss_pred EEEe-----cCCeEEEEEcCCCCCcCEEEEEEEEeCCCCceeEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCC
Q psy7042 624 HVET-----SERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGG 698 (2245)
Q Consensus 624 ~~~~-----~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~ 698 (2245)
.... ........+..+...|.+ ..|.+.|..|.+.-...+.-...|..|.++.+.......+-+.|. |.++++
T Consensus 642 ~~~~~~~~~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~-p~fdgg 719 (741)
T KOG3515|consen 642 REKATQQGQTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWM-PGFDGG 719 (741)
T ss_pred EEeeeeccccccccccccCCcchhhhc-ceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeee-eccccc
Confidence 3221 112233445555555554 999999999999888777777889999999999999999999999 778877
Q ss_pred cccccEEEEeeeCCC
Q psy7042 699 SNITNYIVEKREHPM 713 (2245)
Q Consensus 699 ~~~~~y~v~~~~~~~ 713 (2245)
....|.+.|.....
T Consensus 720 -~~q~f~~~~~~~~~ 733 (741)
T KOG3515|consen 720 -LQQRFFLKYYDLGT 733 (741)
T ss_pred -cccceeeehhhcCC
Confidence 44566666655443
No 12
>KOG3515|consensus
Probab=99.84 E-value=3.8e-18 Score=207.74 Aligned_cols=468 Identities=17% Similarity=0.175 Sum_probs=286.9
Q ss_pred CCCCceecCCcceEEeCCCeEEEEEEEeeec-CCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 88 GEKPDFIVPLKDLVVPLGKLLTLQCEATGTP-VPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 88 ~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
+.+|+....+-+..+..|+.|.|+|.+.++| .+.++|++.++.+. .++....+. +|...+...+.-+.|.|+|.
T Consensus 5 p~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ 79 (741)
T KOG3515|consen 5 PNVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAF 79 (741)
T ss_pred CCCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhc
Confidence 3455555544444889999999999997765 56899999988877 566555544 48888888899999999999
Q ss_pred cCccccee-EEEEEecCCCeeecCCCceEEcCCCeEEEEEEE--ecCCCceEEEeeCceeeecCCc--eEE-----EEe-
Q psy7042 167 NSVGFAHT-SSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFY--AGDQPMEVSLTKNGRVVQSDDR--FKF-----TVL- 235 (2245)
Q Consensus 167 n~~g~~~~-~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~--~g~p~~~i~W~~~g~~l~~~~~--~~~-----~~~- 235 (2245)
|..+.-.. ...+.|.++|.-...........+..+.+.|.+ .+.|.+.+.|+.+++....... ..+ ...
T Consensus 80 ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~ 159 (741)
T KOG3515|consen 80 NSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSY 159 (741)
T ss_pred ccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCcee
Confidence 99776554 556889999876655555666778999999965 4678999999999887654331 100 000
Q ss_pred CCeEEEEEcccCccCceeEEEEEEcCC---cceEEEEEEEEecCCCCCCCCcccceeeccceEEEecCCCCCCCceeEEE
Q psy7042 236 DDYIIIFIKEIRKEDAGDYTVNLSNSS---GSVSGTFTINITGLPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHY 312 (2245)
Q Consensus 236 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~s~~~~w~pp~~~~~~~~~~~ 312 (2245)
.....|.+...+.+|.|+|+|.|.|.. +.......+.|..+......
T Consensus 160 t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~------------------------------ 209 (741)
T KOG3515|consen 160 TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGI------------------------------ 209 (741)
T ss_pred ccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccccccee------------------------------
Confidence 123458888889999999999999853 33334444444332211100
Q ss_pred EEEEEecCCCceEEeeeccCcceEEEcCCCCCCEEEEEEEEEecCCCCCCCCCCCceecCCCCCCCCCCCCcEEEeecCC
Q psy7042 313 VVERRDISMPHWICISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLEGINPIKAKSPYDKPSPPGIPVVTQVGGD 392 (2245)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~c~a~n~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~ 392 (2245)
......+.+..++.+.+.|.+. .+.+
T Consensus 210 --------------------~~~~~~qsF~~g~~inlvc~~~----------------------------------gg~P 235 (741)
T KOG3515|consen 210 --------------------TGAQEQQSFTEGQTINLVCNAQ----------------------------------GGNP 235 (741)
T ss_pred --------------------cchhhcCcccccceEEEEehhh----------------------------------cCCc
Confidence 0000115677899999999442 2234
Q ss_pred eeEEEecCCCCCCCCCccEEEEEeeecCCCCcEEEeeeecCCceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEe
Q psy7042 393 FVNLSWDKPLDDGGSRIQGYWIDKHEVGSDAWQRVNVAICAPSQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQI 472 (2245)
Q Consensus 393 ~~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~ 472 (2245)
...+.|+++...... +-.+..... .......+.+..-..+..-...|.|.|. + .++..+.+
T Consensus 236 ~~~~~w~~~s~~~~~---~sl~~~~~s----------g~~v~~~~~~~~~r~~~~~~~kc~a~n~-~-----~~~~~tav 296 (741)
T KOG3515|consen 236 SQQQTWYKDSRPQSE---SSLLSQEPS----------GDTVSSTLVLRVGRQDLQAQLKCKASNL-L-----AASQITAV 296 (741)
T ss_pred chhhhhccccccchh---hhcccCCCC----------CCcccccccccccccchhhhhhccccCc-c-----ccceeeec
Confidence 457888875332111 100111110 0001112222223333445567999981 1 12222222
Q ss_pred cCCcccCCCc-eeccccccccccccceeeEEEEe-ccCcCeEEEEeCCeecCCCccEEE--EeeC--CeEEEEEeccccc
Q psy7042 473 KDPMAAKAPE-IIVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHI--FAEG--DTYTLIINSVYGV 546 (2245)
Q Consensus 473 ~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~i~~~~~~~~--~~~~--~~~~L~i~~v~~~ 546 (2245)
. .+|. ..+......+..|+...+.|... +.|.+.+.|+|+............ ...+ ....+........
T Consensus 297 ~-----~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~ 371 (741)
T KOG3515|consen 297 Q-----VKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQ 371 (741)
T ss_pred c-----cccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchh
Confidence 2 1222 12233445588899999999865 478889999996554332211110 1111 1224566777789
Q ss_pred CCceEEEEEEeCCCCCCcce--eEeEecCCCCCCCCCcccceEeeCCCeEEEEEeeeecC-CCeEEEEeCCeEeeccCeE
Q psy7042 547 DADEYVCRAVNKGGVKSTKA--ELIIMTAPKFNVPPRFRDTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGHF 623 (2245)
Q Consensus 547 d~G~Y~C~a~n~~g~~~~~~--~l~v~~~p~~~~~p~~~~~~~~~~g~~~~l~C~~~g~p-~~~i~W~~~~~~~~~~~~~ 623 (2245)
|.|.|.|.|.|..+...++. .+.+...|.+...- . ......+.+.....-.+.+.| .+.+.|.+.+..+.....-
T Consensus 372 ~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~-~-~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~ 449 (741)
T KOG3515|consen 372 DGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRH-K-TAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGG 449 (741)
T ss_pred cCceEEccccccccccccccceeccccCCchhhhhc-c-cceeeccCccccccCcccCCCcccchhheecceecccccCc
Confidence 99999999999876655444 44444444332111 0 112223344444443444666 4689999999888655443
Q ss_pred EEEecCCeEEEEEcCCCCCcCEEEEEEEEeCCCCceeEEEEEeeCCC
Q psy7042 624 HVETSERHAILTIRDASNVDTAPYRVVAENDLGMDSAIVKIQISDRP 670 (2245)
Q Consensus 624 ~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~~~~~l~v~~~P 670 (2245)
.+..........+.++...|.|.|.|.|.|..|.+...+.+.+...|
T Consensus 450 ~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp 496 (741)
T KOG3515|consen 450 VVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP 496 (741)
T ss_pred eEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence 33333344455567799999999999999999999998888877665
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.77 E-value=6.2e-18 Score=184.83 Aligned_cols=158 Identities=20% Similarity=0.339 Sum_probs=120.9
Q ss_pred CcceEEeCCCeEEEEEEEeeec-----------CCceEEEECCeec--c-CCCeE---EE--EE-cCcEEEEEEeeeccC
Q psy7042 97 LKDLVVPLGKLLTLQCEATGTP-----------VPKCRWLRNGREI--S-SGARY---RV--ET-AGGVFRLHFNEVTDV 156 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~p-----------~~~i~W~~~g~~l--~-~~~~~---~~--~~-~~~~~~L~i~~~~~~ 156 (2245)
+..+.+.+|++|.|.|.+.+.| .++|.|+|++... . .+.+. .+ .. ......|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 3557889999999999987644 3489999988642 1 11110 00 00 111236999999999
Q ss_pred CCeEEEEEEEcCcccceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEe-----cCCCceEEEeeCceeeecCCceE
Q psy7042 157 DNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYA-----GDQPMEVSLTKNGRVVQSDDRFK 231 (2245)
Q Consensus 157 d~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~-----g~p~~~i~W~~~g~~l~~~~~~~ 231 (2245)
|+|.|+|.|.|..+....++.|.|..++ .+..+.+|+.+.|.|.+. +.|.|.|+|||||.+|..+.++.
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 9999999999999988888888885432 345678999999999986 34679999999999998776665
Q ss_pred EEEeCCeEEEEEcccCccCceeEEEEEEcCC
Q psy7042 232 FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 262 (2245)
Q Consensus 232 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 262 (2245)
+.. +..+|.|.++..+|+|.|+|.|....
T Consensus 183 ~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 183 LRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 543 33489999999999999999999864
No 14
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.68 E-value=1.2e-15 Score=167.01 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=119.7
Q ss_pred CceEEcCCCeEEEEEEecCcC-----------CCeEEEeeCCEec--c-CCce---E--EE-EecCcEEEEEEeeeccCC
Q psy7042 1705 KDLVVPLGKLLTLQCEATGTP-----------VPKCRWLRNGREI--S-SGAR---Y--RV-ETAGGVFRLHFNEVTDVD 1764 (2245)
Q Consensus 1705 ~~~~~~~G~~v~L~C~~~~~p-----------~~~v~W~~~~~~l--~-~~~~---~--~~-~~~~~~~~L~i~~v~~~d 1764 (2245)
....+.+|+++.|.|.+.+.+ .+.+.|+|++... . .+.+ . .. ........|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 457889999999999986643 3489999987542 1 1111 0 00 001112359999999999
Q ss_pred CeEEEEEEecCceeeEEEEEEEecCCCccccCCCceEEcCCCeEEEEEEEec-----cCCcEEEEEECCEEeecCCceEE
Q psy7042 1765 NGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKF 1839 (2245)
Q Consensus 1765 ~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~g~~l~~~~~~~~ 1839 (2245)
+|.|+|+|.|..+....++.|.|..++ ....+.+|+.+.|.|.+.+ .|.|.++|+|||+.|....++.+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~ 183 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQL 183 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEE
Confidence 999999999998888888888885432 3456778999999999863 46789999999999976666544
Q ss_pred EEcCCeEEEEEcccCcccceEEEEEEEcCCe
Q psy7042 1840 TVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 1870 (2245)
Q Consensus 1840 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 1870 (2245)
. .+...|.|.++..+|+|.|+|.|+...+
T Consensus 184 ~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 184 R--NNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred e--CCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 3 3445899999999999999999998653
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.67 E-value=7.5e-16 Score=145.13 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=88.8
Q ss_pred ceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
|.|...+.++.+..|+.+.|.|.+.|.|+|.|.|+|||++|..+.++++...+..+.|+|.++..+|+|.|+|.|.|.+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 67788888999999999999999999999999999999999988888888777778999999999999999999999999
Q ss_pred eeeEEEEEEEEcCCC
Q psy7042 2168 VKSTKAELIIMTAPK 2182 (2245)
Q Consensus 2168 ~~~~~~~l~V~~~p~ 2182 (2245)
...+++.|.|.++|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999998774
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.62 E-value=4.9e-15 Score=139.61 Aligned_cols=97 Identities=23% Similarity=0.426 Sum_probs=90.7
Q ss_pred CeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCc
Q psy7042 184 PRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 263 (2245)
Q Consensus 184 P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 263 (2245)
|.|...|.+..+..|+.+.|.|.+.|.|++.+.|+|||..|..+.++.+......+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 67788899999999999999999999999999999999999877788877777778999999999999999999999999
Q ss_pred ceEEEEEEEEecCCCCC
Q psy7042 264 SVSGTFTINITGLPGPP 280 (2245)
Q Consensus 264 ~~~~~~~l~V~~~p~~~ 280 (2245)
....++.|.|.+.|.+|
T Consensus 81 ~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceeEEEEEEEecCCCCC
Confidence 99999999999999876
No 17
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=1.6e-14 Score=133.50 Aligned_cols=88 Identities=26% Similarity=0.452 Sum_probs=78.0
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+....+ +..++. .|.|.++..+|+|.|+|.|.|.+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~--~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE--ISMSGA--VLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCE--EecCCC--EEEECcCChhhCEEEEEEEEcCC
Confidence 58889999999999999999999999999999999999988876543 333343 79999999999999999999999
Q ss_pred ceeeEEEEEEEE
Q psy7042 2167 GVKSTKAELIIM 2178 (2245)
Q Consensus 2167 G~~~~~~~l~V~ 2178 (2245)
|..+..+.|.|+
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd05851 77 GKDKHQARVYVQ 88 (88)
T ss_pred CceEEEEEEEEC
Confidence 999999999873
No 18
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.54 E-value=6.1e-14 Score=131.88 Aligned_cols=90 Identities=26% Similarity=0.455 Sum_probs=83.1
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|.|.|.|.+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 68888889999999999999999999999999999999999988888888877777899999999999999999999999
Q ss_pred ceeeEEEEEE
Q psy7042 2167 GVKSTKAELI 2176 (2245)
Q Consensus 2167 G~~~~~~~l~ 2176 (2245)
|..+.++.|+
T Consensus 83 G~~~~~~~l~ 92 (92)
T cd05747 83 GKQEAQFTLT 92 (92)
T ss_pred CCEeEEEEeC
Confidence 9998888763
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.53 E-value=2.9e-14 Score=125.39 Aligned_cols=73 Identities=27% Similarity=0.542 Sum_probs=68.1
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+.+.|.|.+.|.|.|+|+|+|++..+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|.+|+++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 688999999999999999999999999888888887776 7999999999999999999999999999999875
No 20
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=5.3e-14 Score=123.92 Aligned_cols=73 Identities=29% Similarity=0.542 Sum_probs=64.2
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCC-CCcEEEEEeC-cEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|.|.|.+.|.|.|.|.|+|||+.|.. +.++.+..++ ...+|.|.++..+|+|.|+|.|.|.+|.+++++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999974 4577776543 3458999999999999999999999999999999975
No 21
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.52 E-value=1.2e-13 Score=126.51 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=73.5
Q ss_pred ceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|+|.++... .++.+...+....|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 356889999999999999999999999999999764 4677777666779999999999999999999999999998888
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 865
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.52 E-value=1e-13 Score=130.11 Aligned_cols=83 Identities=24% Similarity=0.428 Sum_probs=74.5
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEe-CcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
..+++.+|+++.|.|.+.|.|.|.|.|+|+|.++....++.+..+ +....|.|.++..+|+|.|+|.|.|.+|..+..+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 456789999999999999999999999999999988888877654 5567899999999999999999999999999888
Q ss_pred EEEE
Q psy7042 2174 ELII 2177 (2245)
Q Consensus 2174 ~l~V 2177 (2245)
.|.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 8865
No 23
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.52 E-value=1.6e-13 Score=129.91 Aligned_cols=90 Identities=28% Similarity=0.564 Sum_probs=86.4
Q ss_pred ceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+..+.++.+..++..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy7042 2168 VKSTKAELII 2177 (2245)
Q Consensus 2168 ~~~~~~~l~V 2177 (2245)
..+..+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999999976
No 24
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=5.2e-14 Score=125.81 Aligned_cols=74 Identities=35% Similarity=0.671 Sum_probs=67.2
Q ss_pred cCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
+|+.+.|.|.+.|.|.|.|+|+|+|..+....++.+..++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6899999999999999999999999999877666655555 7999999999999999999999999999999875
No 25
>KOG0196|consensus
Probab=99.50 E-value=3.9e-13 Score=159.73 Aligned_cols=194 Identities=29% Similarity=0.395 Sum_probs=152.7
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCc-----------eEEecceeeeceEEEecCCCC
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV-----------WTKVSSYVTTPFVRVRNLAIG 968 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~-----------~~~~~~~~~~~~~~i~~L~p~ 968 (2245)
.+|++|.+|... ++.+++.|+|.+|.+.+|..-..|.|.++...... +..-....+++.+++.+|.|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 689999999887 89999999999999999988889999887644221 111122346788999999999
Q ss_pred ceeeEEEEEEecccc-CCCccccCcccccCCCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEEEecCCcc
Q psy7042 969 STYEFRVMAENQYGL-SKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDK 1047 (2245)
Q Consensus 969 ~~y~~~v~a~n~~g~-~~~s~~~~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~ 1047 (2245)
+.|+|.|.|.|.... ++.......+.+++....|++...++....+.+++.|+|..|+.++|. |..|.|.|.+.+.++
T Consensus 409 ~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~-ildYEvky~ek~~~e 487 (996)
T KOG0196|consen 409 TNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGV-ILDYEVKYYEKDEDE 487 (996)
T ss_pred cccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCc-ceeEEEEEeeccccc
Confidence 999999999997743 333334456778888999999999999999999999999999999886 999999998775432
Q ss_pred ceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCCCCCCCCCCccee
Q psy7042 1048 WIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIM 1127 (2245)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~ 1127 (2245)
.... +..... +..+|.+|+|++.|.|+|+|.+.+|.|++|....+.|
T Consensus 488 ~~~~-~~~t~~--------------------------------~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT 534 (996)
T KOG0196|consen 488 RSYS-TLKTKT--------------------------------TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQT 534 (996)
T ss_pred ccee-EEeccc--------------------------------ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeee
Confidence 1111 111010 0116999999999999999999999999998877766
Q ss_pred e
Q psy7042 1128 C 1128 (2245)
Q Consensus 1128 ~ 1128 (2245)
.
T Consensus 535 ~ 535 (996)
T KOG0196|consen 535 L 535 (996)
T ss_pred c
Confidence 4
No 26
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=7.8e-14 Score=128.90 Aligned_cols=88 Identities=32% Similarity=0.491 Sum_probs=78.4
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
||.|+..+++..+.+|+.++|.|.+.|+|.|.|.|+|++..+....++. ..++ .|.|.+++.+|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEEcCC
Confidence 6899999999999999999999999999999999999999887654443 3344 59999999999999999999999
Q ss_pred ccceeEEEEEec
Q psy7042 170 GFAHTSSRVKIG 181 (2245)
Q Consensus 170 g~~~~~~~l~V~ 181 (2245)
|.+..++.|.|+
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd05851 77 GKDKHQARVYVQ 88 (88)
T ss_pred CceEEEEEEEEC
Confidence 999999998874
No 27
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=1.5e-13 Score=121.45 Aligned_cols=73 Identities=27% Similarity=0.504 Sum_probs=63.6
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEEeC-cEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+|.|.+.|.|.|.|.|+|++..+... .++.+..++ ....|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998753 466665554 3347999999999999999999999999999999975
No 28
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.49 E-value=2e-13 Score=128.22 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=71.5
Q ss_pred ceeeecCccEEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEEEEEeC-----cEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2096 NANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEG-----DTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
.+.+.+|+++.|.|.+.| .|+|.|.|+|||.+|.......+...+ ....|.|.++..+|+|.|+|.|.|..|.+
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 467899999999999999 899999999999999866554433332 13579999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7042 2170 STKAELIIM 2178 (2245)
Q Consensus 2170 ~~~~~l~V~ 2178 (2245)
+..+.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
No 29
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.48 E-value=2.7e-13 Score=127.54 Aligned_cols=91 Identities=23% Similarity=0.418 Sum_probs=82.9
Q ss_pred CCCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcC
Q psy7042 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 89 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
.||.|...|++..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+...+|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 37999999999999999999999999999999999999999998888888877666678999999999999999999999
Q ss_pred cccceeEEEEE
Q psy7042 169 VGFAHTSSRVK 179 (2245)
Q Consensus 169 ~g~~~~~~~l~ 179 (2245)
.|.++.++.|+
T Consensus 82 ~G~~~~~~~l~ 92 (92)
T cd05747 82 EGKQEAQFTLT 92 (92)
T ss_pred CCCEeEEEEeC
Confidence 99988877663
No 30
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=2.6e-13 Score=119.75 Aligned_cols=71 Identities=34% Similarity=0.585 Sum_probs=64.8
Q ss_pred cEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2104 ~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
+|+|.|.+.|.|.|.|+|+|+|..+....++++..++ .|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999999888888877776 4889999999999999999999999999999875
No 31
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=3.1e-13 Score=128.75 Aligned_cols=90 Identities=27% Similarity=0.464 Sum_probs=75.2
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEee--CCEeeCC-----CCcEEEEEeCcEEEEEEcCCCCCCCeEEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK--GSREITP-----SARHHIFAEGDTYTLIINSVYGVDADEYV 2159 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 2159 (2245)
+|++.. +.+.++.+|+.++|.|.+.|.|.|.|.|+| +|..+.. ..++.+........|+|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 477764 678899999999999999999999999999 4554432 24666655555568999999999999999
Q ss_pred EEEEeCCceeeEEEEEEE
Q psy7042 2160 CRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2160 C~a~N~~G~~~~~~~l~V 2177 (2245)
|.|.|.+|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999999998875
No 32
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.47 E-value=5.5e-13 Score=122.74 Aligned_cols=87 Identities=26% Similarity=0.407 Sum_probs=75.9
Q ss_pred EEeeccceeeecCccEEEEEEEEeeCCCeEEEee-CCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2090 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2090 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
+...+.+..+.+|+++.|.|.+.|.|. .+.|++ +|..+..+.++.+..++....|+|.++..+|+|.|+|.|.|.+|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 445677888999999999999999998 999998 577888778888888887789999999999999999999999999
Q ss_pred e-eEEEEEEE
Q psy7042 2169 K-STKAELII 2177 (2245)
Q Consensus 2169 ~-~~~~~l~V 2177 (2245)
. .+++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 56677765
No 33
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.46 E-value=4.5e-13 Score=126.76 Aligned_cols=90 Identities=41% Similarity=0.729 Sum_probs=85.8
Q ss_pred CceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 91 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
|.|...+.++.+.+|++++|.|.+.|.|.+++.|+++|..+..+.++.+...++..+|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 67889999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred cceeEEEEEe
Q psy7042 171 FAHTSSRVKI 180 (2245)
Q Consensus 171 ~~~~~~~l~V 180 (2245)
..+.++.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999998876
No 34
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.46 E-value=5.7e-13 Score=124.68 Aligned_cols=85 Identities=16% Similarity=0.344 Sum_probs=72.4
Q ss_pred eccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEE
Q psy7042 2093 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 2172 (2245)
Q Consensus 2093 ~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 2172 (2245)
++.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+................|.|.++..+|.|.|+|.|.|.+|+...+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 34555688999999999999999999999999998876554433444455689999999999999999999999999999
Q ss_pred EEEEE
Q psy7042 2173 AELII 2177 (2245)
Q Consensus 2173 ~~l~V 2177 (2245)
+.|+|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 98875
No 35
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.46 E-value=5.2e-13 Score=124.54 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=71.7
Q ss_pred EeeccceeeecCccEEEEEEEEeeCC-CeEEEee-CCEeeCC-CCcEEEEEe-CcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2091 IVPLRNANAIQNHNAQFQCTITGCPK-PTISWLK-GSREITP-SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2091 ~~~~~~~~~~~g~~v~l~C~~~g~P~-p~i~W~~-~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
...|++..+.+|++++|.|.+.|.|. |.|+|++ +|+.+.. +.++.+..+ +....|.|.+++.+|+|.|+|.|.|.+
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 34556667899999999999999995 7999998 7877765 445555433 334689999999999999999999997
Q ss_pred -ceeeEEEEEEE
Q psy7042 2167 -GVKSTKAELII 2177 (2245)
Q Consensus 2167 -G~~~~~~~l~V 2177 (2245)
|..+.++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 88899898877
No 36
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.45 E-value=3.7e-13 Score=123.93 Aligned_cols=84 Identities=26% Similarity=0.491 Sum_probs=73.7
Q ss_pred EEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2090 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2090 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
|...|.+..+.+|+.++|.|.+.|.|.|.+.|+|+|..+....++.+ .++ .|.|.++..+|+|.|+|.|.|.+|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAG---DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCC---EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 34556778899999999999999999999999999999987776554 233 79999999999999999999999999
Q ss_pred eEEEEEEE
Q psy7042 2170 STKAELII 2177 (2245)
Q Consensus 2170 ~~~~~l~V 2177 (2245)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 99998875
No 37
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.45 E-value=5.7e-13 Score=126.66 Aligned_cols=83 Identities=28% Similarity=0.507 Sum_probs=71.8
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
.+..+..|+.+.|.|.+.|.|.|.|.|+|+|..+... .++.+..++ ..|.|.++..+|+|.|+|.|.|.+|..+.++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 3457889999999999999999999999999998765 445444343 3799999999999999999999999999999
Q ss_pred EEEEEc
Q psy7042 2174 ELIIMT 2179 (2245)
Q Consensus 2174 ~l~V~~ 2179 (2245)
.|.|..
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 999864
No 38
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.45 E-value=6.4e-13 Score=119.18 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=68.1
Q ss_pred cEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2104 NAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2104 ~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
.+.|.|.+.|.|.|.++|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999998888888877777789999999999999999999999999999988865
No 39
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.45 E-value=8e-13 Score=125.64 Aligned_cols=91 Identities=23% Similarity=0.400 Sum_probs=75.1
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-----CcEEEEEeCcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
.|.|...+....+..|+.++|.|.+.|.|.|.|+|++++..+... .++.+..+.....|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 477776666655666899999999999999999999998877543 234444555557899999999999999999
Q ss_pred EEeCCceeeEEEEEEE
Q psy7042 2162 AVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2162 a~N~~G~~~~~~~l~V 2177 (2245)
|.|.+|..+.++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999999875
No 40
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.44 E-value=9.3e-13 Score=122.90 Aligned_cols=88 Identities=24% Similarity=0.412 Sum_probs=74.8
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
||.+...+.+..+.+|+.++|.|.+.|.|.|.++|+|++..+.....+. ..++ .|.|.+++.+|+|.|.|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~---~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGA---VLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCC---EEEECCCCcccCEEEEEEEEECC
Confidence 4566777788889999999999999999999999999988776554332 2223 89999999999999999999999
Q ss_pred ceeeEEEEEEEE
Q psy7042 2167 GVKSTKAELIIM 2178 (2245)
Q Consensus 2167 G~~~~~~~l~V~ 2178 (2245)
|....++.|.|+
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd04968 77 GKDTHQGRIYVQ 88 (88)
T ss_pred CcEEEEEEEEEC
Confidence 999999999873
No 41
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.44 E-value=6.7e-13 Score=125.21 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=70.8
Q ss_pred ceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEe------CcEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAE------GDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
..++..|+.+.|.|.+.|+|+|.|.|+|||.+|..+.+..+... ...+.|.|.++..+|+|.|+|.|.|.+|++
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45788999999999999999999999999999987654332211 113489999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7042 2170 STKAELIIM 2178 (2245)
Q Consensus 2170 ~~~~~l~V~ 2178 (2245)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999885
No 42
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.44 E-value=9.1e-13 Score=123.75 Aligned_cols=85 Identities=26% Similarity=0.451 Sum_probs=75.5
Q ss_pred CCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEcCccccee
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT 174 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 174 (2245)
.|+.+.+.+|++++|.|.+.|.|.|+|.|+|+|..+....++.+... +...+|.|.+++.+|+|.|+|.|.|..|.++.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 34567899999999999999999999999999999988888877654 44567999999999999999999999999999
Q ss_pred EEEEEe
Q psy7042 175 SSRVKI 180 (2245)
Q Consensus 175 ~~~l~V 180 (2245)
.++|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 888875
No 43
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=1.1e-12 Score=121.01 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=69.9
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEE--eC--cEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFA--EG--DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
|+.++|.|.+.|.|+|.|.|+|++..+... .+|.+.. .+ ..+.|.|.++..+|+|.|+|.|.|.+|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 4666543 22 225799999999999999999999999999999999
Q ss_pred EEcCCC
Q psy7042 2177 IMTAPK 2182 (2245)
Q Consensus 2177 V~~~p~ 2182 (2245)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 987764
No 44
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.43 E-value=5.3e-13 Score=113.53 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=57.6
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
+.|.|.+.|+|.|.++|+|||++|.... ....|.|.++..+|+|.|+|.|.|.+|..++++.|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999999999999999999886321 22389999999999999999999999988888888764
No 45
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.43 E-value=1.2e-12 Score=120.00 Aligned_cols=82 Identities=30% Similarity=0.471 Sum_probs=74.0
Q ss_pred ceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-CeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEE
Q psy7042 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR 177 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 177 (2245)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|+|.++... .++.+...+....|.|.++..+|+|.|+|.|.|..|.++.++.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 467899999999999999999999999999999754 4788877666678999999999999999999999999999988
Q ss_pred EEe
Q psy7042 178 VKI 180 (2245)
Q Consensus 178 l~V 180 (2245)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 876
No 46
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.43 E-value=7.5e-13 Score=117.90 Aligned_cols=73 Identities=29% Similarity=0.519 Sum_probs=63.6
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCC-CCcEEEEEeC-cEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+|.|.+.|.|.|.|.|+|||..+.. ..++.+..++ +...|.|.+++.+|+|.|+|.|.|.+|++++++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999999999974 4566665543 4457999999999999999999999999999999875
No 47
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.43 E-value=7e-13 Score=116.85 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=64.5
Q ss_pred EEEEEEEeeecCCceEEEECCeeccC-CCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISS-GARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+|+|.+.|.|.|.|.|+|+|..|.. +.++.+..+ ++..+|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999999974 457777654 34457999999999999999999999999999999876
No 48
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.42 E-value=5e-13 Score=117.60 Aligned_cols=73 Identities=26% Similarity=0.553 Sum_probs=67.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+...+ +|.|.+++.+|+|.|+|.|.|..|.+++++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999999999999999998888888876544 4999999999999999999999999999999876
No 49
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=6.6e-13 Score=118.43 Aligned_cols=73 Identities=34% Similarity=0.555 Sum_probs=67.3
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+.+.|.|.+.|.|.|.++|+|++..+....++.+..++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 788999999999999999999999999888888776666 6999999999999999999999999999998875
No 50
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.42 E-value=1.1e-12 Score=117.40 Aligned_cols=75 Identities=28% Similarity=0.480 Sum_probs=63.9
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCc-EEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSAR-HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
|+.++|.|.+.|.|.|+|+|+|+|+++..... .....++. .|.|.+++.+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78899999999999999999999999864322 12233443 79999999999999999999999999999999883
No 51
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.42 E-value=1.3e-12 Score=118.08 Aligned_cols=76 Identities=33% Similarity=0.534 Sum_probs=68.9
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+++.|.|.+.|.|.|.|.|+|++..+....++.+...+....|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999999998888888877777789999999999999999999999999987766654
No 52
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.41 E-value=1.5e-12 Score=117.17 Aligned_cols=72 Identities=29% Similarity=0.590 Sum_probs=62.8
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCC---cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSA---RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+.++|.|.+.|.|.|+|+|+|+|.++.... ++. ..++ .|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-VSSG---ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-eeCC---EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999887543 222 2233 7999999999999999999999999999999987
No 53
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.41 E-value=2e-12 Score=121.05 Aligned_cols=88 Identities=28% Similarity=0.459 Sum_probs=75.2
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
+..+|.++.+.+|+.++|.|.+.|.|.|.+.|+|+|..+................|.|.+++.+|.|.|+|.|.|..|.+
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 44567777899999999999999999999999999998876555444444445679999999999999999999999999
Q ss_pred eeEEEEEe
Q psy7042 173 HTSSRVKI 180 (2245)
Q Consensus 173 ~~~~~l~V 180 (2245)
..++.|+|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 99988875
No 54
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.41 E-value=1.3e-12 Score=124.83 Aligned_cols=90 Identities=26% Similarity=0.447 Sum_probs=75.5
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-----CcEEEEEeCcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
+|.|. .+.+.++.+|+.++|.|.+.|.|.|.|.|+|++..+... .++.+........|.|.+++.+|+|.|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 46775 456788999999999999999999999999998776543 244554455567899999999999999999
Q ss_pred EEeCCceeeEEEEEEE
Q psy7042 2162 AVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2162 a~N~~G~~~~~~~l~V 2177 (2245)
|.|.+|..+.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999999888865
No 55
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.40 E-value=7.2e-13 Score=116.31 Aligned_cols=69 Identities=38% Similarity=0.560 Sum_probs=62.7
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
|.|.|.+.|.|.|.|+|+|+|..+....++.+..++ .|.|.++..+|+|.|+|.|.|.+|..+.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 579999999999999999999999888877776665 799999999999999999999999999888773
No 56
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.40 E-value=2.1e-12 Score=118.11 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=65.6
Q ss_pred ccEEEEEEEEeeCCC--eEEEeeCCEeeCCC---CcEEE-EEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2103 HNAQFQCTITGCPKP--TISWLKGSREITPS---ARHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2103 ~~v~l~C~~~g~P~p--~i~W~~~g~~l~~~---~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
++++|.|.+.|.|.| .|.|+|||..|... .++.. ........|+|.+++.+|+|.|+|.|.|.+|+.++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999998 58999999988643 24432 2223345899999999999999999999999999999999
Q ss_pred EEcCC
Q psy7042 2177 IMTAP 2181 (2245)
Q Consensus 2177 V~~~p 2181 (2245)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 57
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.40 E-value=1.5e-12 Score=115.18 Aligned_cols=73 Identities=25% Similarity=0.510 Sum_probs=64.1
Q ss_pred EEEEEEEeeecCCceEEEECCeeccC-CCeEEEEEcC-cEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISS-GARYRVETAG-GVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+|+|.+.|.|.|.|.|+|++..+.. ..++.+...+ +..+|.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999999875 3577776554 4447999999999999999999999999999999876
No 58
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.39 E-value=2.2e-12 Score=121.23 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=71.6
Q ss_pred cceEEeCCCeEEEEEEEee-ecCCceEEEECCeeccCCCeEEEEEcC-----cEEEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 98 KDLVVPLGKLLTLQCEATG-TPVPKCRWLRNGREISSGARYRVETAG-----GVFRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
..+.+.+|++++|.|.+.| .|+|.+.|+|||.+|..+.+..+...+ ....|.|..++.+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3578899999999999999 899999999999999865554433322 1357999999999999999999999999
Q ss_pred ceeEEEEEec
Q psy7042 172 AHTSSRVKIG 181 (2245)
Q Consensus 172 ~~~~~~l~V~ 181 (2245)
++.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999998885
No 59
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.39 E-value=1.1e-12 Score=117.19 Aligned_cols=74 Identities=32% Similarity=0.608 Sum_probs=66.3
Q ss_pred CCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 104 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
+|+.+.|.|.+.|.|.|.|.|+|+|..+....++.+...+ +|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6999999999999999999999999999877666554433 5999999999999999999999999999998876
No 60
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.39 E-value=2.6e-12 Score=120.41 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=67.6
Q ss_pred ceEEeeccceeee---cCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEE-EeCcEEEEEEcCCC-CCCCeEEEEEE
Q psy7042 2088 PEIIVPLRNANAI---QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIF-AEGDTYTLIINSVY-GVDADEYVCRA 2162 (2245)
Q Consensus 2088 p~~~~~~~~~~~~---~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~-~~d~G~Y~C~a 2162 (2245)
|.|...|.++.+. +|+.++|.|.+.|.|.|.|+|+|||..|.....+.+. .++ .|.|.++. .+|+|.|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g---~L~i~~~~~~~D~G~Y~C~A 78 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG---NLIISNPSEVKDSGRYQCLA 78 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC---eEEEccCCccCcCEEEEEEE
Confidence 6777777776554 4789999999999999999999999999755433333 334 69999985 69999999999
Q ss_pred EeCCceeeE-EEEE
Q psy7042 2163 VNKGGVKST-KAEL 2175 (2245)
Q Consensus 2163 ~N~~G~~~~-~~~l 2175 (2245)
.|.+|+..+ .+.|
T Consensus 79 ~N~~G~~~S~~~~l 92 (94)
T cd05848 79 TNSIGSILSREALL 92 (94)
T ss_pred EcCCCeEEeccEEE
Confidence 999999854 4544
No 61
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.38 E-value=2.9e-12 Score=121.78 Aligned_cols=91 Identities=30% Similarity=0.525 Sum_probs=77.1
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-----CeEEEEEcCcEEEEEEeeeccCCCeEEEEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
+|+|...+....+..|+.++|.|.+.|.|.|.|+|++++..+... .++.+........|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 588888877777777999999999999999999999998877532 245555555556799999999999999999
Q ss_pred EEcCcccceeEEEEEe
Q psy7042 165 AYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 165 a~n~~g~~~~~~~l~V 180 (2245)
|.|..|.++.++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999988876
No 62
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.38 E-value=2.5e-12 Score=122.56 Aligned_cols=90 Identities=33% Similarity=0.576 Sum_probs=75.5
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEE--CCeeccC-----CCeEEEEEcCcEEEEEEeeeccCCCeEEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR--NGREISS-----GARYRVETAGGVFRLHFNEVTDVDNGDYT 162 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 162 (2245)
+|+|.. +.++.+.+|+.++|.|.+.|.|.|.|.|+| ++..+.. +.|+.+....+...|+|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 577765 678999999999999999999999999999 4544432 34677765555667999999999999999
Q ss_pred EEEEcCcccceeEEEEEe
Q psy7042 163 CEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 163 C~a~n~~g~~~~~~~l~V 180 (2245)
|.|.|..|....++.|+|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999999888875
No 63
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.38 E-value=2e-12 Score=119.08 Aligned_cols=84 Identities=32% Similarity=0.632 Sum_probs=75.0
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
|...|.+..+..|+.++|.|.+.|.|.|.+.|+|+|..+....++... ++ .|.|.+++.+|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 566788899999999999999999999999999999999877776653 33 59999999999999999999999999
Q ss_pred eeEEEEEe
Q psy7042 173 HTSSRVKI 180 (2245)
Q Consensus 173 ~~~~~l~V 180 (2245)
.+++.|+|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 99988876
No 64
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.38 E-value=4.1e-12 Score=118.67 Aligned_cols=83 Identities=22% Similarity=0.423 Sum_probs=72.4
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
..+++.+|+.+.|.|.+.|.|.|.+.|+|+|..+....++.+.. ++....|.|.+++.+|+|.|+|.|.|.+|..+.++
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 45578999999999999999999999999999998877776643 34456899999999999999999999999998888
Q ss_pred EEEE
Q psy7042 2174 ELII 2177 (2245)
Q Consensus 2174 ~l~V 2177 (2245)
.|.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 8865
No 65
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.37 E-value=4.3e-12 Score=116.87 Aligned_cols=86 Identities=26% Similarity=0.454 Sum_probs=74.3
Q ss_pred ecCCcceEEeCCCeEEEEEEEeeecCCceEEEE-CCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 94 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
..+|.++.+.+|+.+.|.|.+.|.|. .+.|++ +|..+..+.++.+...+....|.|.+++.+|+|.|+|.|+|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 45677788999999999999999998 899998 5778877778888777766789999999999999999999999986
Q ss_pred -eeEEEEEe
Q psy7042 173 -HTSSRVKI 180 (2245)
Q Consensus 173 -~~~~~l~V 180 (2245)
..++.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 45667765
No 66
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.37 E-value=5.1e-12 Score=116.67 Aligned_cols=83 Identities=22% Similarity=0.424 Sum_probs=71.0
Q ss_pred CCeEEEEEEEecCCCceEEEeeCceeeecC-CceEEEEe--C--CeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 198 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVL--D--DYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 198 G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~--~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
|+.++|.|.+.|.|++.+.|+|++..+... .++.+... + ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999988654 34544431 2 236799999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy7042 273 ITGLPGPP 280 (2245)
Q Consensus 273 V~~~p~~~ 280 (2245)
|.++|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99988765
No 67
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.36 E-value=4e-12 Score=118.22 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=68.3
Q ss_pred eeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEE-EEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy7042 2097 ANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHH-IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175 (2245)
Q Consensus 2097 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 2175 (2245)
..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|.+|+...++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 357889999999999999999999999999998765431 1222334479999999999999999999999999999998
Q ss_pred EE
Q psy7042 2176 II 2177 (2245)
Q Consensus 2176 ~V 2177 (2245)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 68
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.35 E-value=2.9e-12 Score=114.68 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=64.7
Q ss_pred ccEEEEEEEEe--eCCCeEEEeeCCEeeCC---CCcEEEEEe-CcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2103 HNAQFQCTITG--CPKPTISWLKGSREITP---SARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2103 ~~v~l~C~~~g--~P~p~i~W~~~g~~l~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
+++.|.|.+.+ .+++.|.|+|||++|.. +.+|.+... .....|.|.+++.+|+|+|+|.|.|.+++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 47899999976 55888999999999963 235554321 1112799999999999999999999999999999999
Q ss_pred EEcCC
Q psy7042 2177 IMTAP 2181 (2245)
Q Consensus 2177 V~~~p 2181 (2245)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 69
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.35 E-value=2.8e-12 Score=113.26 Aligned_cols=70 Identities=24% Similarity=0.508 Sum_probs=59.4
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
+.|.|.+.|.|.|.|.|+|++..+.... ......+ ..|.|.++..+|+|.|+|.|.|.+|..+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKLNNN--KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEEcCC--CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999998876543 2222222 38999999999999999999999999999999987
No 70
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.35 E-value=5.4e-12 Score=117.45 Aligned_cols=85 Identities=25% Similarity=0.336 Sum_probs=67.2
Q ss_pred ceEEeeccceeeecC---ccEEEEEEEEeeCCCeEEEeeCCEeeCC-CCcEEEEEeCcEEEEEEcCCC-CCCCeEEEEEE
Q psy7042 2088 PEIIVPLRNANAIQN---HNAQFQCTITGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVY-GVDADEYVCRA 2162 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g---~~v~l~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a 2162 (2245)
|.|...|.+..+.++ ..+.|.|.+.|.|.|.|+|+|++..+.. ..++. ..++ .|.|.++. .+|+|.|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~~~g---~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-MVGG---NLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-EECC---EEEECcCCcCCCCEEEEEEE
Confidence 677777777655554 4799999999999999999999998864 34443 3344 79999985 68999999999
Q ss_pred EeCCceeeE-EEEEE
Q psy7042 2163 VNKGGVKST-KAELI 2176 (2245)
Q Consensus 2163 ~N~~G~~~~-~~~l~ 2176 (2245)
.|.+|...+ .+.|.
T Consensus 78 ~N~~G~~~s~~a~l~ 92 (93)
T cd05849 78 SNIYGKVRSREATLS 92 (93)
T ss_pred EeCcceEEEccEEEe
Confidence 999999844 56663
No 71
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=3.9e-12 Score=110.16 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=58.1
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
+.|.|.+.|.|.|.++|+|||++|....++ . .+ ..|.|.++..+|+|.|+|.|.|.+|..+...++.|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 468999999999999999999999765432 2 23 279999999999999999999999988777766653
No 72
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=5e-12 Score=117.10 Aligned_cols=86 Identities=24% Similarity=0.367 Sum_probs=69.9
Q ss_pred ceEEee--ccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeC
Q psy7042 2088 PEIIVP--LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 2165 (2245)
Q Consensus 2088 p~~~~~--~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 2165 (2245)
|.+... +.++.+.+|++|+|.|.+.|. .|.|.|+|+|..+... ++.+..++. .|+|.+++.+|+|.|.|.|.|.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~ 77 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNE 77 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcC
Confidence 455433 345789999999999999999 9999999999988654 455544443 7999999999999999999999
Q ss_pred Ccee-eEEEEEEE
Q psy7042 2166 GGVK-STKAELII 2177 (2245)
Q Consensus 2166 ~G~~-~~~~~l~V 2177 (2245)
+|.. +..+.|.|
T Consensus 78 ~G~~~S~~~~L~V 90 (91)
T cd05740 78 VSNMTSDPYILNV 90 (91)
T ss_pred CCCEEeeeEEEEe
Confidence 9986 44677876
No 73
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.35 E-value=4.9e-12 Score=111.68 Aligned_cols=71 Identities=28% Similarity=0.595 Sum_probs=63.8
Q ss_pred eEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 107 LLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 107 ~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
+++|.|.+.|.|.|.+.|+|+|..+....++.+...+. |.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999998777777766554 788899999999999999999999999998876
No 74
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.35 E-value=8.7e-12 Score=117.06 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=67.2
Q ss_pred ceEEeeccceeeecC---ccEEEEEEEEeeCCCeEEEeeCCEeeCCCC--cEEEEEeCcEEEEEEcCCC-CCCCeEEEEE
Q psy7042 2088 PEIIVPLRNANAIQN---HNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVY-GVDADEYVCR 2161 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g---~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~ 2161 (2245)
|.|...|+++.+.+| +.|+|.|.+.|.|.|.|+|+|||..|.... ++.+ .++ .|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~g---~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-VAG---NLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-ECC---eEEEccCCccCcCEEEEEE
Confidence 677777888766665 589999999999999999999999987433 3333 334 69998865 6999999999
Q ss_pred EEeCCceeeE-EEEE
Q psy7042 2162 AVNKGGVKST-KAEL 2175 (2245)
Q Consensus 2162 a~N~~G~~~~-~~~l 2175 (2245)
|.|.+|...+ .+.|
T Consensus 78 A~N~~G~~~s~~a~l 92 (94)
T cd05850 78 AINRCGTVVSREANL 92 (94)
T ss_pred EEcCcCcEEEEEEEE
Confidence 9999999854 5555
No 75
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.35 E-value=6.1e-12 Score=117.38 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=71.0
Q ss_pred cCCcceEEeCCCeEEEEEEEeeecC-CceEEEE-CCeeccC-CCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEcCc-
Q psy7042 95 VPLKDLVVPLGKLLTLQCEATGTPV-PKCRWLR-NGREISS-GARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYNSV- 169 (2245)
Q Consensus 95 ~~~~~~~v~~G~~v~L~C~~~g~p~-~~i~W~~-~g~~l~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~- 169 (2245)
..|....+.+|+.++|.|.+.|.|. |.|.|++ +|..+.. +.++.+... +...+|+|.+++.+|+|.|+|.|+|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 4566678899999999999999995 7999998 8877765 446655433 334679999999999999999999996
Q ss_pred ccceeEEEEEe
Q psy7042 170 GFAHTSSRVKI 180 (2245)
Q Consensus 170 g~~~~~~~l~V 180 (2245)
|.++.++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888877
No 76
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.35 E-value=4e-12 Score=115.27 Aligned_cols=74 Identities=27% Similarity=0.437 Sum_probs=63.7
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcE-EEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARH-HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+.++|.|.+.|.|.|.|.|+++|..+...... .....+ ..|.|.+++.+|+|.|+|.|.|.+|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDG--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccC--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999999999999999999988765432 122222 37999999999999999999999999999999987
No 77
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=7.4e-12 Score=116.84 Aligned_cols=88 Identities=30% Similarity=0.471 Sum_probs=75.1
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
||.+...|.+..+.+|+.++|.|.+.|.|.|.+.|+|++..+....... ..++ .|.|.+++.+|+|.|+|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MSGA--VLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--EeCC--EEEECCCCcccCEEEEEEEEECC
Confidence 4567778888999999999999999999999999999988776554433 2233 59999999999999999999999
Q ss_pred ccceeEEEEEec
Q psy7042 170 GFAHTSSRVKIG 181 (2245)
Q Consensus 170 g~~~~~~~l~V~ 181 (2245)
|..+.++.|.|.
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd04968 77 GKDTHQGRIYVQ 88 (88)
T ss_pred CcEEEEEEEEEC
Confidence 999999998874
No 78
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.34 E-value=5.3e-12 Score=113.47 Aligned_cols=71 Identities=25% Similarity=0.444 Sum_probs=58.3
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCC-cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEE--EEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK--AELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~--~~l~V 2177 (2245)
|+|.|.+.|.|.|.|+|+|+|.+|.... ++.+...+ ..|.|.++..+|+|.|.|.|.|.+|...++ +.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5899999999999999999999987654 44443333 389999999999999999999999998554 55544
No 79
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.34 E-value=5.8e-12 Score=109.54 Aligned_cols=69 Identities=23% Similarity=0.593 Sum_probs=58.1
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
|++|+|.|.+.|.|.|.|+|+|+|+++....++.. . ...|.|.++. |+|.|+|.|.|.+|..+.++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~--~--~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV--G--RNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec--C--ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 68899999999999999999999998876654322 2 2379999975 89999999999999998888773
No 80
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.34 E-value=6.7e-12 Score=119.35 Aligned_cols=91 Identities=29% Similarity=0.569 Sum_probs=76.0
Q ss_pred CCceecCC--cceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-CeEEEEEcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 90 KPDFIVPL--KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 90 ~P~~~~~~--~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
||.|...+ .+..+..|+.++|.|.+.|.|.|.|.|+|+|..+... .++.+...+. .|.|.+++.+|+|.|+|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~ 78 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGS--EMTILDVDKLDEAEYTCIAE 78 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCC--EEEECCCChhhCEEEEEEEE
Confidence 45555543 3457899999999999999999999999999998765 5565544433 59999999999999999999
Q ss_pred cCcccceeEEEEEecC
Q psy7042 167 NSVGFAHTSSRVKIGT 182 (2245)
Q Consensus 167 n~~g~~~~~~~l~V~~ 182 (2245)
|..|..+.++.|.|..
T Consensus 79 N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 79 NKAGEQEAEIHLKVFA 94 (95)
T ss_pred cCCCeEEEEEEEEEEe
Confidence 9999999999998864
No 81
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.34 E-value=5.5e-12 Score=111.03 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=58.5
Q ss_pred EEEEEEeeCCCeEEEeeCCEeeCCCCcEEE--EE---eCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2107 FQCTITGCPKPTISWLKGSREITPSARHHI--FA---EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2107 l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
|.|.+.|+|.|+|+|+|||++|..+.++.. .. ......|.|.++..+|+|.|+|.|+|.+|++++++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 689999999999999999999987765422 11 12245799999999999999999999999998888775
No 82
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.33 E-value=7.2e-12 Score=121.82 Aligned_cols=91 Identities=26% Similarity=0.457 Sum_probs=72.7
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-----CcEEEEEeCcEEEEEE--cCCCCCCCeEEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-----ARHHIFAEGDTYTLII--NSVYGVDADEYV 2159 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i--~~v~~~d~G~Y~ 2159 (2245)
||.|...+.+..+.+|+.++|.|.+.|.|.|.|.|+|+|..+... .+..+..++....+.| ..+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 588888899999999999999999999999999999999998762 2223334454333333 334689999999
Q ss_pred EEEEeCCce-eeEEEEEEE
Q psy7042 2160 CRAVNKGGV-KSTKAELII 2177 (2245)
Q Consensus 2160 C~a~N~~G~-~~~~~~l~V 2177 (2245)
|.|.|.+|. .++.+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999999 577788876
No 83
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.33 E-value=8.1e-12 Score=119.46 Aligned_cols=90 Identities=32% Similarity=0.545 Sum_probs=76.0
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-----CeEEEEEcCcEEEEEEeeeccCCCeEEEEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
+|.|. .+.+..+.+|+.++|.|.+.|.|.|.|.|+|++..+... .++.+.......+|+|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 57775 456788999999999999999999999999998776532 355555555566899999999999999999
Q ss_pred EEcCcccceeEEEEEe
Q psy7042 165 AYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 165 a~n~~g~~~~~~~l~V 180 (2245)
|.|..|.++.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999998888875
No 84
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.33 E-value=1.1e-11 Score=119.72 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=68.1
Q ss_pred cCccEEEEEEEEeeCCCeEEEeeCCEeeCC-CCcEEEE--EeCc--EEEEEEcCCC-CCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2101 QNHNAQFQCTITGCPKPTISWLKGSREITP-SARHHIF--AEGD--TYTLIINSVY-GVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~-~~~~~~~--~~~~--~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
.|..++|.|.+.|.|.|.+.|+|||..|.. +.+|.+. ..+. ...|+|.++. .+|.|.|+|.|.|.+|.++..+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 568999999999999999999999999874 3456543 2221 3579999997 69999999999999999999999
Q ss_pred EEEEcCC
Q psy7042 2175 LIIMTAP 2181 (2245)
Q Consensus 2175 l~V~~~p 2181 (2245)
|.|..+|
T Consensus 102 L~~~~~p 108 (109)
T cd05773 102 LVSTSRP 108 (109)
T ss_pred EEecCCC
Confidence 9998766
No 85
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.33 E-value=7e-12 Score=110.26 Aligned_cols=70 Identities=23% Similarity=0.427 Sum_probs=60.4
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
|.|.|.+.|.|+|.+.|+|||.+|..+.++. ..+ ..|.|.++..+|+|.|+|.|.|.+|..+.++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--KSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--cCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999998775432 222 379999999999999999999999998888888764
No 86
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.33 E-value=5.3e-12 Score=118.15 Aligned_cols=77 Identities=32% Similarity=0.538 Sum_probs=66.1
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEee--------CCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
|+.|+|.|.+.|.|.|.|.|+|+|..+ ....++.+..++ .|+|.+++.+|+|.|.|.|.|.+|....++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 789999999999999999999998653 234466665555 699999999999999999999999999999
Q ss_pred EEEEEcCC
Q psy7042 2174 ELIIMTAP 2181 (2245)
Q Consensus 2174 ~l~V~~~p 2181 (2245)
.|.|....
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99997643
No 87
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.33 E-value=9e-12 Score=111.76 Aligned_cols=74 Identities=24% Similarity=0.474 Sum_probs=68.0
Q ss_pred eEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 107 LLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 107 ~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 37899999999999999999999998888888887777778999999999999999999999999999988876
No 88
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.32 E-value=9.5e-12 Score=111.88 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=59.5
Q ss_pred EEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEe-------CcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2107 FQCTITGCPKPTISWLKGSREITPSARHHIFAE-------GDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2107 l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|.|.+.|.|.|+|+|+|||++|..+.+...... .....|.|.++..+|+|.|+|.|.|.+|.+++++.|..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 689999999999999999999987765433211 22457999999999999999999999999998887753
No 89
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.32 E-value=6.1e-12 Score=112.17 Aligned_cols=70 Identities=30% Similarity=0.580 Sum_probs=60.5
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeC--CCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCcee-eEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREIT--PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 2177 (2245)
++|.|.+.|.|.|.|+|+|++.++. ...++.+..++ .|.|.+++.+|+|.|.|.|.|.+|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g---~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc---EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 5799999999999999999999887 44566554444 69999999999999999999999996 67788877
No 90
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.31 E-value=1e-11 Score=110.67 Aligned_cols=73 Identities=23% Similarity=0.446 Sum_probs=63.5
Q ss_pred EEEEEEEeeecCCceEEEECCeeccC-CCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISS-GARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
++|.|.+.|.|.|.|.|+|+|..+.. ..++.+... .+..+|.|.+++.+|+|.|+|.|.|..|.+++++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999999999999999999984 356766544 34557999999999999999999999999999998876
No 91
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.31 E-value=1.4e-11 Score=115.15 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=74.0
Q ss_pred CCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcC-cEEEEEEeeeccCCCeEEEEEEEcCccccee
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAG-GVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT 174 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 174 (2245)
.|..+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++.+.... ...+|.|.+++.+|+|.|+|.|.|..|.++.
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 455788999999999999999999999999999999887777665433 3457999999999999999999999999999
Q ss_pred EEEEEe
Q psy7042 175 SSRVKI 180 (2245)
Q Consensus 175 ~~~l~V 180 (2245)
+++|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 888875
No 92
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.31 E-value=1.1e-11 Score=116.90 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=70.4
Q ss_pred ceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEc------CcEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETA------GGVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
...+..|+.++|.|.+.|.|+|.+.|+|||.+|..+.+...... ....+|.|..++.+|+|.|+|.|.|..|.+
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46788999999999999999999999999999986654333211 123479999999999999999999999999
Q ss_pred eeEEEEEec
Q psy7042 173 HTSSRVKIG 181 (2245)
Q Consensus 173 ~~~~~l~V~ 181 (2245)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999998885
No 93
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=7.5e-12 Score=112.49 Aligned_cols=71 Identities=34% Similarity=0.568 Sum_probs=59.2
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeC---CCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREIT---PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
++|.|.+.|.|.|.|+|+|+|.... ...++++..++. .|.|.+++.+|+|.|.|.|.|.+|..+.++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999986432 223444444443 7999999999999999999999999999999987
No 94
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.30 E-value=1.5e-11 Score=115.32 Aligned_cols=86 Identities=38% Similarity=0.679 Sum_probs=68.1
Q ss_pred CceecCCcceEEe---CCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeec-cCCCeEEEEEEE
Q psy7042 91 PDFIVPLKDLVVP---LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVT-DVDNGDYTCEAY 166 (2245)
Q Consensus 91 P~~~~~~~~~~v~---~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~ 166 (2245)
|.|+..|.++.+. +|+.++|.|.+.|.|.|+|+|+|||..+.....+.+...++ .|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 7788888887654 47999999999999999999999999997544344433344 48888874 699999999999
Q ss_pred cCccccee-EEEE
Q psy7042 167 NSVGFAHT-SSRV 178 (2245)
Q Consensus 167 n~~g~~~~-~~~l 178 (2245)
|..|...+ .+.|
T Consensus 80 N~~G~~~S~~~~l 92 (94)
T cd05848 80 NSIGSILSREALL 92 (94)
T ss_pred cCCCeEEeccEEE
Confidence 99998765 4433
No 95
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.30 E-value=9.9e-12 Score=111.21 Aligned_cols=77 Identities=19% Similarity=0.436 Sum_probs=61.9
Q ss_pred EeeccceeeecCccEEEEEEEEeeCCC-eEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2091 IVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2091 ~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
...|+++.+.+|+.+.|.|.+.|.|.| +|.|+|||.++.... +.....|+|..+. |+|.|.|.|.|.+|..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGLN--ETSKFSCEAHNAKGVT 73 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEcccc--CCeEEEEEEEeccCcE
Confidence 345677789999999999999999999 799999999886511 1122379999885 8899999999999987
Q ss_pred eE-EEEE
Q psy7042 2170 ST-KAEL 2175 (2245)
Q Consensus 2170 ~~-~~~l 2175 (2245)
.+ .+.|
T Consensus 74 ~s~~a~~ 80 (81)
T cd05749 74 TSRTGTV 80 (81)
T ss_pred EeeeEEe
Confidence 54 4554
No 96
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.30 E-value=7.4e-12 Score=110.29 Aligned_cols=69 Identities=33% Similarity=0.588 Sum_probs=60.0
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+|.|.+.|.|.|.+.|+|++..+.. .++++..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999887754 456665444 7999999999999999999999999999988865
No 97
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.30 E-value=1.5e-11 Score=112.55 Aligned_cols=79 Identities=29% Similarity=0.423 Sum_probs=65.3
Q ss_pred CeEEEEEEEeeecCC--ceEEEECCeeccCC---CeEEE-EEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 106 KLLTLQCEATGTPVP--KCRWLRNGREISSG---ARYRV-ETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 106 ~~v~L~C~~~g~p~~--~i~W~~~g~~l~~~---~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
+.++|.|.+.|.|.| .+.|+|||..+... .++.. ........|+|.+++.+|+|.|+|.|.|..|..++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999987 58999999988643 24432 2222334799999999999999999999999999999999
Q ss_pred ecCCC
Q psy7042 180 IGTPP 184 (2245)
Q Consensus 180 V~~~P 184 (2245)
|..||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99887
No 98
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.29 E-value=1.3e-11 Score=111.48 Aligned_cols=75 Identities=32% Similarity=0.574 Sum_probs=67.3
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
|++++|.|.+.|.|.|.|.|++++..+....++.+...++...|+|.+++.+|+|.|+|.|.|..|...+.+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 789999999999999999999999998877788887777777899999999999999999999999887765543
No 99
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.29 E-value=9.1e-12 Score=106.03 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=57.5
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
+.|.|.+.|.|.|.++|||||++|... .....|.|.++..+|+|.|+|.|.|..|..+++..|+|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999998632 123479999999999999999999999998888888764
No 100
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.29 E-value=3e-11 Score=116.75 Aligned_cols=96 Identities=26% Similarity=0.357 Sum_probs=77.6
Q ss_pred CCCceecCCcceE-E---eCCCeEEEEEEEeeecCCceEEEECCeeccC-CCeEEEEEc--Cc--EEEEEEeeec-cCCC
Q psy7042 89 EKPDFIVPLKDLV-V---PLGKLLTLQCEATGTPVPKCRWLRNGREISS-GARYRVETA--GG--VFRLHFNEVT-DVDN 158 (2245)
Q Consensus 89 ~~P~~~~~~~~~~-v---~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~-~~~~~~~~~--~~--~~~L~i~~~~-~~d~ 158 (2245)
.+|.|..+|.... + ..|..++|.|.+.|.|.+.+.|+|||..|.. +.++.+... +. ..+|.|.+++ .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 4788888776332 2 2568999999999999999999999999874 346654321 11 3479999997 5999
Q ss_pred eEEEEEEEcCcccceeEEEEEecCCC
Q psy7042 159 GDYTCEAYNSVGFAHTSSRVKIGTPP 184 (2245)
Q Consensus 159 G~Y~C~a~n~~g~~~~~~~l~V~~~P 184 (2245)
|.|+|.|.|..|.+..++.|.|..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999999887
No 101
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.29 E-value=1.6e-11 Score=113.50 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=64.4
Q ss_pred ccEEEEEEEEeeCCC--eEEEeeCCEeeCCCC---cEEE-EEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2103 HNAQFQCTITGCPKP--TISWLKGSREITPSA---RHHI-FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2103 ~~v~l~C~~~g~P~p--~i~W~~~g~~l~~~~---~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
++++|.|.+.|.|.| .+.|+|||..|.... ++.. ........|.|.+++.+|+|.|+|.|.|.+|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 478999999999988 579999999886432 2321 1122234799999999999999999999999999999999
Q ss_pred EEcCC
Q psy7042 2177 IMTAP 2181 (2245)
Q Consensus 2177 V~~~p 2181 (2245)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98765
No 102
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=1.3e-11 Score=110.79 Aligned_cols=73 Identities=30% Similarity=0.558 Sum_probs=63.8
Q ss_pred CccEEEEEEEEeeCCCeEEEee-CCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++.+..++ .|.|..+..+|+|.|+|.|.|.+|.++..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 67777766666655555 7999999999999999999999999988888865
No 103
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=1.2e-11 Score=110.75 Aligned_cols=74 Identities=30% Similarity=0.545 Sum_probs=62.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCCe-EEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGAR-YRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+.++|.|.+.|+|.|+|.|+|+|.++..... .....+++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 78999999999999999999999999864321 11223343 5889999999999999999999999999999987
No 104
>KOG0196|consensus
Probab=99.28 E-value=1.1e-10 Score=139.43 Aligned_cols=194 Identities=22% Similarity=0.271 Sum_probs=142.9
Q ss_pred eCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCC--CCCeEEEc----------eeeeeeEEEecCCC
Q psy7042 667 SDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHP--MSSWIRVG----------NTRFTTMAITGLSP 734 (2245)
Q Consensus 667 ~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~--~~~w~~~~----------~~~~~~~~i~~L~p 734 (2245)
..||.+|.++... ++.+++.|.|.+|...||-....|.+..+.-. ......++ +-......+.+|.|
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 4688889888765 89999999999999888888889988876532 22222222 12456889999999
Q ss_pred CCEEEEEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeecccccccccCCceEEEEeeeccCcccccc
Q psy7042 735 GHQYEFRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIK 814 (2245)
Q Consensus 735 ~t~y~~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (2245)
.+.|+|.|.|.|....-.++...
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~--------------------------------------------------------- 430 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQ--------------------------------------------------------- 430 (996)
T ss_pred ccccEEEEEEeecccccCCCCCc---------------------------------------------------------
Confidence 99999999999866432211100
Q ss_pred ccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcceEE
Q psy7042 815 TSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVL 894 (2245)
Q Consensus 815 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (2245)
...+-
T Consensus 431 ---------------------------------------------------------------------------~a~vn 435 (996)
T KOG0196|consen 431 ---------------------------------------------------------------------------FASVN 435 (996)
T ss_pred ---------------------------------------------------------------------------ceeEE
Confidence 00011
Q ss_pred EEEEecCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecceeeeceEEEecCCCCceeeEE
Q psy7042 895 IFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFR 974 (2245)
Q Consensus 895 ~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~ 974 (2245)
..+-+..|.+...++....+.+++.|+|..|..++| .|..|+|+|.+...............+..+|.+|+|++.|.|+
T Consensus 436 Itt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png-~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~Yvfq 514 (996)
T KOG0196|consen 436 ITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNG-VILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQ 514 (996)
T ss_pred eeccccCCCccceEEEeeeccCceEEecCCCCCCCC-cceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEE
Confidence 112235788888899999999999999999999988 7999999999754332222233345678999999999999999
Q ss_pred EEEEeccccCCCccccCcccccC
Q psy7042 975 VMAENQYGLSKPALTIDPIKAKH 997 (2245)
Q Consensus 975 v~a~n~~g~~~~s~~~~~~~~~t 997 (2245)
|+|....|.|+.+. .+.++|
T Consensus 515 VRarT~aG~G~~S~---~~~fqT 534 (996)
T KOG0196|consen 515 VRARTAAGYGPYSG---KHEFQT 534 (996)
T ss_pred EEEecccCCCCCCC---ceeeee
Confidence 99999999999884 444444
No 105
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.28 E-value=1.9e-11 Score=110.00 Aligned_cols=72 Identities=32% Similarity=0.592 Sum_probs=62.6
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCC---eEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGA---RYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|++++|.|.+.|.|.|+|.|+|+|..+.... ++.+ .++ .|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV--SSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe--eCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999887542 3332 233 5999999999999999999999999999998887
No 106
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.28 E-value=1.5e-11 Score=111.32 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=67.1
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
.+..+.+|+.++|.|.+.|. .|.|.|+|||.+|..+.++.+. +. .|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 44568899999999999985 6789999999999887766553 33 7999999999999999999999999888887
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
|+|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 765
No 107
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=1.3e-11 Score=110.20 Aligned_cols=73 Identities=26% Similarity=0.522 Sum_probs=66.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+.+.|.|.+.|.|.|.+.|+|++..+....++.+...+ .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999999999999999999999888788775544 4999999999999999999999999999998876
No 108
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.28 E-value=2.7e-11 Score=113.73 Aligned_cols=85 Identities=33% Similarity=0.585 Sum_probs=68.4
Q ss_pred CceecCCcceEEeCC---CeEEEEEEEeeecCCceEEEECCeeccCC--CeEEEEEcCcEEEEEEeeec-cCCCeEEEEE
Q psy7042 91 PDFIVPLKDLVVPLG---KLLTLQCEATGTPVPKCRWLRNGREISSG--ARYRVETAGGVFRLHFNEVT-DVDNGDYTCE 164 (2245)
Q Consensus 91 P~~~~~~~~~~v~~G---~~v~L~C~~~g~p~~~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~ 164 (2245)
|.|...|.++.+.+| +.++|.|.+.|+|.|.|.|+|||..+... .++.+. ++ .|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV--AG--NLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE--CC--eEEEccCCccCcCEEEEEE
Confidence 778888888887776 58999999999999999999999998743 344443 34 48887765 6999999999
Q ss_pred EEcCccccee-EEEEE
Q psy7042 165 AYNSVGFAHT-SSRVK 179 (2245)
Q Consensus 165 a~n~~g~~~~-~~~l~ 179 (2245)
|+|..|...+ .+.|.
T Consensus 78 A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 78 AINRCGTVVSREANLR 93 (94)
T ss_pred EEcCcCcEEEEEEEEe
Confidence 9999998776 55553
No 109
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.28 E-value=0.00011 Score=103.70 Aligned_cols=199 Identities=14% Similarity=0.104 Sum_probs=114.2
Q ss_pred CCCCeEEEEEEEEcCCCcCCCCCcCcceEEeeecCCCCCceeccCC-ceEEcCCCeEEEEEEecCcCCCeEEEeeCCEec
Q psy7042 1660 VEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLK-DLVVPLGKLLTLQCEATGTPVPKCRWLRNGREI 1738 (2245)
Q Consensus 1660 ~~~d~g~y~c~a~n~~g~~~~~~~~~~v~~~~~~~~~~p~~~~~~~-~~~~~~G~~v~L~C~~~~~p~~~v~W~~~~~~l 1738 (2245)
..-..|.++..|.|..+...... .+.+.+.. ..+..... ...+..|+..+|...+....+..+.|+.+-..+
T Consensus 1922 ~~~G~Y~VtV~A~N~Vs~~~a~~---~V~Vle~V----~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~ 1994 (2740)
T TIGR00864 1922 PRVDDHMVNLRAKNEVSCAQANL---HIEVLEAV----RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHL 1994 (2740)
T ss_pred CCCCcEEEEEEEEeccceeeeeE---EEEEEEec----cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeeccc
Confidence 34556788889999988754332 23333322 11111111 113678999999999854445579998775554
Q ss_pred cCCceEEEEecCcEEEEEEeeeccCCCeEEEEE--EecCceeeEEEEEEEecCCCcccc-CCCceEEcCCCeEEEEEEEe
Q psy7042 1739 SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCE--AYNSVGFAHTSSRVKIGTPPRIDR-MPNALYIPEGDNTKVKIFYA 1815 (2245)
Q Consensus 1739 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~--~~n~~g~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~ 1815 (2245)
..+..+.. .+...+... ...|.|... |.|..|.......+.|+.+..... .........+..+.|.|.+.
T Consensus 1995 ~g~~~~~~--~G~~vty~~-----~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~ 2067 (2740)
T TIGR00864 1995 HGDSLVIH--MGKDVSYTA-----EAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATS 2067 (2740)
T ss_pred CCCcceee--cCCceEEcc-----CCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEc
Confidence 44433221 222222222 368888655 567777766666777776653221 11223455688999999987
Q ss_pred ccCC-cEEEEEEC-CEEeecCCceEEEEcCCeEEEEEcccCcccceEEEEE--EEcCCeeeEEEEEEEEeCCC
Q psy7042 1816 GDQP-MEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVN--LSNSSGSVSGTFTINITGLP 1884 (2245)
Q Consensus 1816 ~~p~-~~v~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~p 1884 (2245)
..+. ..+.|..+ |......+...+.. .....|.|... |.|......+...+.|...+
T Consensus 2068 ~~~~~v~~~WDFGDGt~~~~T~~~~~sH------------tY~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~ 2128 (2740)
T TIGR00864 2068 PKPNFMACHWDFGDGSAGQDTDEPRAEH------------EYLHPGDYRVQVNASNLVSFFSAHAEINVQVLA 2128 (2740)
T ss_pred cCCCcEEEEEEecCCCCccccCCceeEE------------EecCCccEEEEEEEEcceeeeeeEEEEEEEEec
Confidence 6553 68999875 54433222111111 11234888766 57888877777766666543
No 110
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.28 E-value=1.8e-11 Score=110.55 Aligned_cols=75 Identities=29% Similarity=0.538 Sum_probs=63.2
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEEc
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMT 2179 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 2179 (2245)
+.|.|.+.|.|.|.|.|+|+++.+..+.+.++...+....|.|.++..+|+|.|+|.|.|.+|..+..+.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 479999999999999999999998766433333333334799999999999999999999999999999998863
No 111
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=3.3e-11 Score=114.79 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=72.6
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCC-eEEEeeCCEeeCCC--CcEEEEEe----CcEEEEEEcCCCCCC-CeEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY 2158 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y 2158 (2245)
||.+. .+....+.+|+.+.|.|.+.|.|.| .|.|++++..+... .+|.+... +..+.|.|.++..+| .|.|
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 45564 3556778999999999999999999 59999999988754 46776654 334589999999855 9999
Q ss_pred EEEEEeCCceeeEEEEE
Q psy7042 2159 VCRAVNKGGVKSTKAEL 2175 (2245)
Q Consensus 2159 ~C~a~N~~G~~~~~~~l 2175 (2245)
.|.|.|..|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999999888776
No 112
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=4e-11 Score=112.06 Aligned_cols=87 Identities=21% Similarity=0.347 Sum_probs=68.9
Q ss_pred EEeeccceeeecCccEEEEEEEEeeCCCeEEEee-CCEeeCCCCcEEEEEe-CcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2090 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK-GSREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2090 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
+...|.+..+.+|+.+.|.|.+.|.| +.+.|++ ++..+....++.+... +....|+|.+++.+|+|.|+|.|.|.+|
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 34456677899999999999999997 4999998 6777766555555443 4557899999999999999999999976
Q ss_pred e-eeEEEEEEE
Q psy7042 2168 V-KSTKAELII 2177 (2245)
Q Consensus 2168 ~-~~~~~~l~V 2177 (2245)
. .+.++.|.|
T Consensus 82 ~~~~~sv~l~~ 92 (92)
T cd04977 82 TESEATVNLKI 92 (92)
T ss_pred CcceeEEEEEC
Confidence 5 466666654
No 113
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.27 E-value=1.9e-11 Score=115.96 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=68.7
Q ss_pred EEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCc--EEEEEeCcEEEEEEcCC-----CCCCCeEEEEEE
Q psy7042 2090 IIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSAR--HHIFAEGDTYTLIINSV-----YGVDADEYVCRA 2162 (2245)
Q Consensus 2090 ~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~a 2162 (2245)
|...|.+..+.+|++++|.|.+.|.|.|.|.|+|||..+..... +.+..++ .|.|.++ ...|+|.|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 34456677888999999999999999999999999999875443 4555555 4667666 588999999999
Q ss_pred EeC-Ccee-eEEEEEEE
Q psy7042 2163 VNK-GGVK-STKAELII 2177 (2245)
Q Consensus 2163 ~N~-~G~~-~~~~~l~V 2177 (2245)
.|. .|.. +..+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 9998 55677764
No 114
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.27 E-value=2.6e-11 Score=117.87 Aligned_cols=91 Identities=31% Similarity=0.585 Sum_probs=72.1
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-----CeEEEEEcCcEEEEEEe--eeccCCCeEEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-----ARYRVETAGGVFRLHFN--EVTDVDNGDYT 162 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~--~~~~~d~G~Y~ 162 (2245)
||.|+..|.++.+.+|+.++|.|.+.|.|.|.|.|+|+|..+... .+..+...+....+.|. .++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 588999999999999999999999999999999999999998761 22333334443334433 33689999999
Q ss_pred EEEEcCccc-ceeEEEEEe
Q psy7042 163 CEAYNSVGF-AHTSSRVKI 180 (2245)
Q Consensus 163 C~a~n~~g~-~~~~~~l~V 180 (2245)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 555777776
No 115
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.27 E-value=1.9e-11 Score=114.21 Aligned_cols=81 Identities=27% Similarity=0.502 Sum_probs=67.9
Q ss_pred ccceeeecCccEEEEEEE-EeeCCCeEEEeeCCEeeCC-CCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceee-
Q psy7042 2094 LRNANAIQNHNAQFQCTI-TGCPKPTISWLKGSREITP-SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS- 2170 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~- 2170 (2245)
|.+..+.+|+++.|.|.+ .|.|.|.|.|+|+|..+.. ..++.+..++ .|.|.++..+|+|.|+|.|.|.+|...
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceee
Confidence 456678999999999998 7999999999999999886 4455555544 799999999999999999999999874
Q ss_pred EEEEEEE
Q psy7042 2171 TKAELII 2177 (2245)
Q Consensus 2171 ~~~~l~V 2177 (2245)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05724 80 AAARLSV 86 (86)
T ss_pred eeEEEEC
Confidence 4566654
No 116
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.26 E-value=2.6e-11 Score=112.33 Aligned_cols=87 Identities=29% Similarity=0.463 Sum_probs=71.3
Q ss_pred CCceec--CCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEc
Q psy7042 90 KPDFIV--PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 90 ~P~~~~--~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 167 (2245)
+|.|.. .+.++.+.+|++++|.|.+.|. .|.|.|+|++..+... ++.+...++ +|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N 76 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASN 76 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEc
Confidence 366654 3456789999999999999999 9999999999988654 555554444 599999999999999999999
Q ss_pred Cccccee-EEEEEe
Q psy7042 168 SVGFAHT-SSRVKI 180 (2245)
Q Consensus 168 ~~g~~~~-~~~l~V 180 (2245)
..|...+ .+.|.|
T Consensus 77 ~~G~~~S~~~~L~V 90 (91)
T cd05740 77 EVSNMTSDPYILNV 90 (91)
T ss_pred CCCCEEeeeEEEEe
Confidence 9998666 666776
No 117
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.26 E-value=2.4e-11 Score=108.78 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=64.5
Q ss_pred CeEEEEEEEecCC--CceEEEeeCceeeecC---CceEEEEe-CCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 199 DNTKVKIFYAGDQ--PMEVSLTKNGRVVQSD---DRFKFTVL-DDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 199 ~~~~l~C~~~g~p--~~~i~W~~~g~~l~~~---~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
+++.|.|.+.+.| ++.|.|+|||++|... .++.+... ...+.|.|.+++.+|+|+|+|.|.|..++.+.++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4689999998744 8899999999999632 23333211 2344799999999999999999999999999999999
Q ss_pred EecCC
Q psy7042 273 ITGLP 277 (2245)
Q Consensus 273 V~~~p 277 (2245)
|.+||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 118
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.25 E-value=3.4e-11 Score=111.93 Aligned_cols=81 Identities=28% Similarity=0.595 Sum_probs=68.2
Q ss_pred eEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEE-EEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEE
Q psy7042 100 LVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYR-VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRV 178 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 178 (2245)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+|..+....+.. +........|.|.+++.+|+|.|+|.|.|..|....+++|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 457889999999999999999999999999998665431 2222334469999999999999999999999999999988
Q ss_pred Ee
Q psy7042 179 KI 180 (2245)
Q Consensus 179 ~V 180 (2245)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 76
No 119
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=3.2e-11 Score=112.27 Aligned_cols=86 Identities=27% Similarity=0.500 Sum_probs=68.8
Q ss_pred CCceecCCcceEEeCCC---eEEEEEEEeeecCCceEEEECCeeccC-CCeEEEEEcCcEEEEEEeeec-cCCCeEEEEE
Q psy7042 90 KPDFIVPLKDLVVPLGK---LLTLQCEATGTPVPKCRWLRNGREISS-GARYRVETAGGVFRLHFNEVT-DVDNGDYTCE 164 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~---~v~L~C~~~g~p~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~ 164 (2245)
.|.|..+|.++.+.+|. .+.|.|.+.|+|.|+|.|+|++..+.. ..++.+. ++ .|.|.++. .+|+|.|+|.
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEEEE
Confidence 47788888887776654 899999999999999999999998863 4455443 34 48999885 6999999999
Q ss_pred EEcCccccee-EEEEE
Q psy7042 165 AYNSVGFAHT-SSRVK 179 (2245)
Q Consensus 165 a~n~~g~~~~-~~~l~ 179 (2245)
|+|..|...+ .++|.
T Consensus 77 A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 77 VSNIYGKVRSREATLS 92 (93)
T ss_pred EEeCcceEEEccEEEe
Confidence 9999998766 55553
No 120
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.25 E-value=1.6e-11 Score=114.53 Aligned_cols=76 Identities=26% Similarity=0.460 Sum_probs=59.7
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCC----EeeCCCC-cE-EEEE-------eCcEEEEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGS----REITPSA-RH-HIFA-------EGDTYTLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g----~~l~~~~-~~-~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
|+.|+|.|.+.|.|.|.|+|+|++ ..+.... .+ .+.. .+....|.|.++..+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999963 3332221 11 1111 122347999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy7042 2169 KSTKAELII 2177 (2245)
Q Consensus 2169 ~~~~~~l~V 2177 (2245)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999999988
No 121
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.24 E-value=2.3e-11 Score=108.57 Aligned_cols=70 Identities=29% Similarity=0.454 Sum_probs=58.9
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
++|.|.+.|.|.|.+.|+|++..+.... ..... ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFEN--FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeEec--CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999999999999999998776442 22222 2237999999999999999999999999999999887
No 122
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.24 E-value=2.9e-11 Score=112.99 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=60.8
Q ss_pred CccEEEEEEEEeeCCCeEEEeeC----CEeeCCCCc--EEEEEe-------CcEEEEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKG----SREITPSAR--HHIFAE-------GDTYTLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~----g~~l~~~~~--~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
|+.++|.|.+.|.|.|.|+|+|+ |..+..... ..+... .....|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78899999999999999999984 554543322 122111 22357999999999999999999999999
Q ss_pred eeEEEEEEE
Q psy7042 2169 KSTKAELII 2177 (2245)
Q Consensus 2169 ~~~~~~l~V 2177 (2245)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999988
No 123
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.23 E-value=3.3e-11 Score=109.01 Aligned_cols=79 Identities=23% Similarity=0.488 Sum_probs=68.3
Q ss_pred CcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 97 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
|+...+.+|+.++|.|.+.+. .+.|.|+|||.+|..+.++.+. ++ .|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 456788999999999999986 5689999999999887777664 33 599999999999999999999999988888
Q ss_pred EEEe
Q psy7042 177 RVKI 180 (2245)
Q Consensus 177 ~l~V 180 (2245)
.|+|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 7765
No 124
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.23 E-value=3.5e-11 Score=111.41 Aligned_cols=78 Identities=22% Similarity=0.535 Sum_probs=65.3
Q ss_pred eeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2098 NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
....|++++|.|.+.|.|.|.+.|+|+|..+....... .......|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45679999999999999999999999999886554322 2233458999999999999999999999999888888764
No 125
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.23 E-value=2e-11 Score=107.21 Aligned_cols=69 Identities=28% Similarity=0.682 Sum_probs=61.3
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
|+|.|.+.|.|.|.|.|+|+|..+..+.++.+...+ .|.|.+++.+|+|.|+|.|.|..|.++.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 579999999999999999999999887787765543 599999999999999999999999998887763
No 126
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.23 E-value=5.2e-11 Score=104.91 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=58.0
Q ss_pred EEEEEeeecCCceEEEECCeeccCCCeEEE--EE---cCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 110 LQCEATGTPVPKCRWLRNGREISSGARYRV--ET---AGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 110 L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
|.|.+.|+|.|+|+|+|||.+|..+.+... .. ......|.|.+++.+|+|.|+|.|+|..|+++.++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 789999999999999999999987665422 11 12234799999999999999999999999988887664
No 127
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.21 E-value=5.5e-11 Score=107.77 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=64.3
Q ss_pred CCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 198 GDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 198 G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
|+.+.|.|.+.|.|.|.|.|+++|..+...... .........|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 789999999999999999999999988755432 1122333579999999999999999999999999999999873
No 128
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.21 E-value=6.1e-11 Score=102.56 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=55.4
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
+.|.|.+.|.|+|++.|+|||.++... .++. .++. +|.|.++..+|+|.|+|.|+|.++.......++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 469999999999999999999998765 3332 2343 799999999999999999999877665554444
No 129
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.21 E-value=1.4e-10 Score=119.17 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=88.2
Q ss_pred EEEEeeeccCCCeEEEEEEEcCcccceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEecC-CC-ceEEEeeCceee
Q psy7042 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGD-QP-MEVSLTKNGRVV 224 (2245)
Q Consensus 147 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g~-p~-~~i~W~~~g~~l 224 (2245)
+|.|.+++.+|+|.|.|.+.+..|.....+.|+|..+|.+...+......+|+.++|.|.+.|. |. +.|+|+|+|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 5999999999999999999999899889999999999999888776666689999999999985 54 589999998642
Q ss_pred ec-----CCc----eEEEEeCC---eEEEEEcccCccCceeEEEEEEcCC
Q psy7042 225 QS-----DDR----FKFTVLDD---YIIIFIKEIRKEDAGDYTVNLSNSS 262 (2245)
Q Consensus 225 ~~-----~~~----~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~ 262 (2245)
.. ... .....++. .+.|.|..-..++.+.|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 110 11111111 2357776666566779999998754
No 130
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.21 E-value=6.1e-11 Score=103.18 Aligned_cols=69 Identities=29% Similarity=0.682 Sum_probs=57.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
|+.++|.|.+.|.|.|+|.|+|+|..+....++.. + ...|.|.++ +|+|.|+|.|.|..|....++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---~-~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---G-RNVLELTNI--YESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---C-ccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEEC
Confidence 78999999999999999999999999876554432 2 225889887 489999999999999988887763
No 131
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.20 E-value=5.4e-11 Score=106.48 Aligned_cols=78 Identities=26% Similarity=0.514 Sum_probs=62.7
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeecCC-ceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTPVP-KCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
|+..|+++.+.+|+.+.|.|++.|.|.| +|.|+|||.++... +. ..++ .|.|..+ .|+|.|.|.|+|..|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~--~~~s--~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA--PSPS--VLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC--CCCC--EEEEccc--cCCeEEEEEEEeccCc
Confidence 4567888999999999999999999999 79999999998641 11 1122 5888877 5789999999999997
Q ss_pred cee-EEEE
Q psy7042 172 AHT-SSRV 178 (2245)
Q Consensus 172 ~~~-~~~l 178 (2245)
..+ .++|
T Consensus 73 ~~s~~a~~ 80 (81)
T cd05749 73 TTSRTGTV 80 (81)
T ss_pred EEeeeEEe
Confidence 765 4444
No 132
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.20 E-value=1.6e-10 Score=106.53 Aligned_cols=88 Identities=25% Similarity=0.400 Sum_probs=73.9
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCe-EEEeeCCEeeCCC--CcEEEEEe----CcEEEEEEcCCCCCC-CeEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPS--ARHHIFAE----GDTYTLIINSVYGVD-ADEY 2158 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~-i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~G~Y 2158 (2245)
||.+ .....+.+.+|+.+.|.|.+.+.|+|. |.|.+++..|..+ .+|.+... +..+.|+|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4655 555667899999999999998899986 8999988887654 57877654 577899999998877 7999
Q ss_pred EEEEEeCCceeeEEEEE
Q psy7042 2159 VCRAVNKGGVKSTKAEL 2175 (2245)
Q Consensus 2159 ~C~a~N~~G~~~~~~~l 2175 (2245)
.|.|.|..|+....+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999888877
No 133
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.19 E-value=1.3e-10 Score=110.68 Aligned_cols=88 Identities=27% Similarity=0.420 Sum_probs=72.7
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCC-ceEEEECCeeccCC--CeEEEEEc----CcEEEEEEeeecc-CCCeEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVP-KCRWLRNGREISSG--ARYRVETA----GGVFRLHFNEVTD-VDNGDY 161 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~~~~-~d~G~Y 161 (2245)
||.|.. +....+.+|+.++|.|.+.|.|.| .|.|++++..+... .++.+... +...+|.|.+++. +|.|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 566654 566788999999999999999999 59999999988753 47777654 2335799999999 559999
Q ss_pred EEEEEcCcccceeEEEE
Q psy7042 162 TCEAYNSVGFAHTSSRV 178 (2245)
Q Consensus 162 ~C~a~n~~g~~~~~~~l 178 (2245)
+|.|.|..|.+...+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998888776
No 134
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.19 E-value=1.5e-10 Score=108.24 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=67.9
Q ss_pred ecCCcceEEeCCCeEEEEEEEeeecCCceEEEE-CCeeccCCCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEcCcc-
Q psy7042 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYNSVG- 170 (2245)
Q Consensus 94 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~-~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g- 170 (2245)
...|....+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++.+... +...+|+|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 34567788999999999999999975 999998 6777766555554433 3456899999999999999999999865
Q ss_pred cceeEEEEEe
Q psy7042 171 FAHTSSRVKI 180 (2245)
Q Consensus 171 ~~~~~~~l~V 180 (2245)
....++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 4555666654
No 135
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.19 E-value=9.1e-11 Score=105.54 Aligned_cols=70 Identities=29% Similarity=0.415 Sum_probs=58.4
Q ss_pred EEEEEeeecCCceEEEECCeeccCCCeEEEEEc-------CcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 110 LQCEATGTPVPKCRWLRNGREISSGARYRVETA-------GGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 110 L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
|.|.+.|.|.|.|+|+|||..|..+.+...... .....|.|.+++.+|+|.|+|.|.|..|.++.+++|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 789999999999999999999987764433211 2244699999999999999999999999998887765
No 136
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.19 E-value=4.3e-11 Score=107.60 Aligned_cols=71 Identities=28% Similarity=0.528 Sum_probs=53.5
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCC----CCCeEEEEEEEeCCceeeE-EEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYG----VDADEYVCRAVNKGGVKST-KAEL 2175 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~-~~~l 2175 (2245)
++|.|.+.|.|.|+|+|+|||..+.......+........|.|..+.. +|+|.|.|.|.|.+|++.+ .+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 479999999999999999999988654322232222223788888854 7999999999999998754 3443
No 137
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.19 E-value=5.5e-11 Score=103.01 Aligned_cols=69 Identities=30% Similarity=0.468 Sum_probs=57.8
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
+.|.|.+.|.|.|.++|||||.+|.....+ . ....|.|.++..+|+|.|+|.|.|..|......++++.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 368999999999999999999999765332 1 23479999999999999999999999988777777654
No 138
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.19 E-value=6.6e-11 Score=107.04 Aligned_cols=70 Identities=24% Similarity=0.411 Sum_probs=59.1
Q ss_pred EEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEE---EEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2105 AQFQCTITG-CPKPTISWLKGSREITPSARHH---IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2105 v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
+.|.|.+.| .|.|.+.|+|+|+++....++. +........|.|.++..+|+|.|+|.|.|.+|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 9999999999999998665432 444455678999999999999999999999999877764
No 139
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.18 E-value=1.2e-10 Score=107.60 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=64.6
Q ss_pred CeEEEEEEEecCCCc--eEEEeeCceeeecCC---ceE-EEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 199 DNTKVKIFYAGDQPM--EVSLTKNGRVVQSDD---RFK-FTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 199 ~~~~l~C~~~g~p~~--~i~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
+.+.|.|.+.|.|.| .+.|+|+|..|.... .+. .......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999977 568999999986432 221 22223446899999999999999999999999999999999
Q ss_pred EecCC
Q psy7042 273 ITGLP 277 (2245)
Q Consensus 273 V~~~p 277 (2245)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99875
No 140
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.18 E-value=6.9e-11 Score=104.35 Aligned_cols=71 Identities=31% Similarity=0.554 Sum_probs=59.6
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEec
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
+.|.|.+.|.|.|.|.|+|++..+..+. ......++ +|.|.+++.+|+|.|+|.|.|..|.++.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 4799999999999999999998876542 33333333 69999999999999999999999999999988873
No 141
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.17 E-value=9.8e-11 Score=105.27 Aligned_cols=71 Identities=31% Similarity=0.612 Sum_probs=58.1
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCC-eEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee--EEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGA-RYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT--SSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V 180 (2245)
|+|.|.+.|.|.|+|.|+|+|.++.... ++.+...++ .|.|.+++.+|+|.|+|.|.|..|...+ .++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCC--EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5899999999999999999999987653 455544333 6999999999999999999999998765 445554
No 142
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.17 E-value=7.3e-11 Score=103.79 Aligned_cols=69 Identities=26% Similarity=0.468 Sum_probs=59.0
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
++|.|.+.|.|.|.+.|+|||..+..+.++.. .+ .+|.|.+++.+|+|.|+|.|.|..|..+.+.++.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK--SG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc--CC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 47999999999999999999999987755432 23 36999999999999999999999998887777665
No 143
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=8e-11 Score=108.45 Aligned_cols=73 Identities=30% Similarity=0.561 Sum_probs=57.7
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCE---e--eCCCC---cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSR---E--ITPSA---RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~---~--l~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
|+.++|.|.+.|.|.|.|.|+|++. . +.... ++... ....|.|.++..+|+|.|.|.|.|.+|+....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT---NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc---cccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence 7899999999999999999999742 1 11111 11111 224799999999999999999999999999999
Q ss_pred EEEE
Q psy7042 2174 ELII 2177 (2245)
Q Consensus 2174 ~l~V 2177 (2245)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 9875
No 144
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.17 E-value=9.7e-11 Score=104.74 Aligned_cols=69 Identities=25% Similarity=0.476 Sum_probs=52.4
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCC--CcEEEEEeCcEEEEEEcCCCC----CCCeEEEEEEEeCCceeeEE-EEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYG----VDADEYVCRAVNKGGVKSTK-AEL 2175 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~~-~~l 2175 (2245)
+.|.|.+.|.|.|+|+|+|||.++... .++.+...++ .|.|..+.. .|+|.|+|.|.|.+|...+. +.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 479999999999999999999987433 3333333333 688877764 37899999999999998553 443
No 145
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.16 E-value=9.6e-11 Score=109.67 Aligned_cols=76 Identities=33% Similarity=0.628 Sum_probs=65.0
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeec--------cCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREI--------SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
|+.++|.|.+.|.|.|.|.|+|+|..+ ....++.+...+ .|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 789999999999999999999988653 234466664433 599999999999999999999999999999
Q ss_pred EEEecCC
Q psy7042 177 RVKIGTP 183 (2245)
Q Consensus 177 ~l~V~~~ 183 (2245)
.|.|...
T Consensus 78 ~l~V~~~ 84 (90)
T cd05726 78 YLEVTDV 84 (90)
T ss_pred EEEEeec
Confidence 9999764
No 146
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.16 E-value=1.5e-10 Score=109.75 Aligned_cols=85 Identities=29% Similarity=0.537 Sum_probs=67.9
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCC--eEEEEEcCcEEEEEEeee-----ccCCCeEEEEEE
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA--RYRVETAGGVFRLHFNEV-----TDVDNGDYTCEA 165 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~a 165 (2245)
|...|.+..+.+|++++|.|.+.|.|.|.|.|+|||..+.... ++.+...+ .|.|.++ ..+|+|.|+|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 4567788888999999999999999999999999999987543 34444443 2666666 589999999999
Q ss_pred EcC-ccccee-EEEEEe
Q psy7042 166 YNS-VGFAHT-SSRVKI 180 (2245)
Q Consensus 166 ~n~-~g~~~~-~~~l~V 180 (2245)
.|. .|...+ .+.|+|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 998744 666665
No 147
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.16 E-value=1.5e-10 Score=103.61 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=52.7
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeC--CCCcEEEEEeCcEEEEEEcCCCC----CCCeEEEEEEEeCCceeeEE-EEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREIT--PSARHHIFAEGDTYTLIINSVYG----VDADEYVCRAVNKGGVKSTK-AEL 2175 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~~-~~l 2175 (2245)
+.|.|.+.|.|.|.|+|+|+|..+. .+.++.+..++ ..|.|..+.. .|+|.|+|.|.|.+|.+.+. +.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4799999999999999999999764 34455543333 3788887742 46999999999999988544 443
No 148
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.15 E-value=1.2e-10 Score=105.92 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=55.8
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeC--------CCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCcee-eEEEEE
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREIT--------PSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK-STKAEL 2175 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l 2175 (2245)
|+|.|.+.|+|.|.|.|+|++.... ...++.+..++ .|.|.++..+|+|.|.|.|.|..|.+ +..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC---eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5899999999999999999643211 23455554444 79999999999999999999999988 666777
Q ss_pred EE
Q psy7042 2176 II 2177 (2245)
Q Consensus 2176 ~V 2177 (2245)
+|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 64
No 149
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.15 E-value=1.8e-10 Score=107.62 Aligned_cols=82 Identities=29% Similarity=0.618 Sum_probs=68.0
Q ss_pred CCcceEEeCCCeEEEEEEE-eeecCCceEEEECCeeccC-CCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccce
Q psy7042 96 PLKDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGREISS-GARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAH 173 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 173 (2245)
.|.+..+.+|+++.|.|.+ .|.|.|.+.|+|+|..+.. ..++.+.. ++ .|.|.+++.+|+|.|+|.|.|..|...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-DG--NLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-CC--EEEEeECCcccCEEEEEEEEeccCcee
Confidence 4677889999999999998 7899999999999999886 44555544 23 599999999999999999999999865
Q ss_pred e-EEEEEe
Q psy7042 174 T-SSRVKI 180 (2245)
Q Consensus 174 ~-~~~l~V 180 (2245)
+ .+.|.|
T Consensus 79 s~~~~l~V 86 (86)
T cd05724 79 SAAARLSV 86 (86)
T ss_pred eeeEEEEC
Confidence 5 555554
No 150
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=1.2e-10 Score=104.73 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=58.1
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecC-CceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSD-DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
++|.|.+.|.|.|.|+|+|+|..+... ....+........|.|.++..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 479999999999999999998643222 11122222233479999999999999999999999999999999873
No 151
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.14 E-value=1.4e-10 Score=103.46 Aligned_cols=71 Identities=27% Similarity=0.560 Sum_probs=59.1
Q ss_pred EEEEEEEeeecCCceEEEECCeecc--CCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccc-eeEEEEEec
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREIS--SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFA-HTSSRVKIG 181 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 181 (2245)
++|.|.+.|.|.|.|.|+|++..+. ...++..... + .|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS-G--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC-c--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999999887 4456665433 3 49999999999999999999999985 457777763
No 152
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.14 E-value=2.9e-10 Score=106.72 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=62.7
Q ss_pred ceEEeeccceeeec---CccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCC-CCCCeEEEEEEE
Q psy7042 2088 PEIIVPLRNANAIQ---NHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVY-GVDADEYVCRAV 2163 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~---g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~ 2163 (2245)
|.|...+.++.+.+ |..+.|.|.+.|.|.|.|+|+|++..+.......+...+. .|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 66777777655444 4679999999999999999999999885432222222222 68998887 599999999999
Q ss_pred eCCceeeE
Q psy7042 2164 NKGGVKST 2171 (2245)
Q Consensus 2164 N~~G~~~~ 2171 (2245)
|.+|++.+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99998754
No 153
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.14 E-value=1.9e-10 Score=103.32 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=62.6
Q ss_pred CCeEEEEEEEeeecCCceEEEE-CCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
|+.+.|.|.+.|.|.|.+.|++ ++..+....++.....+ +|.|..+..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 67777666666554433 5999999999999999999999999988888875
No 154
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.14 E-value=1.3e-10 Score=108.23 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=65.7
Q ss_pred cceeeecCccEEEEEEEEe-----eCCCeEEEeeCCEeeCCC--CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2095 RNANAIQNHNAQFQCTITG-----CPKPTISWLKGSREITPS--ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g-----~P~p~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
++..+.+|+.+.|.|.+.| .|.|.|.|||+|..+... ....+..++. .|.|.++..+|+|.|.|.|.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCc
Confidence 3456789999999999999 699999999999765421 1223333333 799999999999999999999999
Q ss_pred eeeEEEEEEE
Q psy7042 2168 VKSTKAELII 2177 (2245)
Q Consensus 2168 ~~~~~~~l~V 2177 (2245)
..+.++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9999998875
No 155
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.13 E-value=1.5e-10 Score=102.06 Aligned_cols=69 Identities=35% Similarity=0.636 Sum_probs=59.3
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEe
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 180 (2245)
++|.|.+.|.|+|.+.|+|++..+.. .++.+...+ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCC---EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999887754 355555333 5999999999999999999999999999888876
No 156
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.13 E-value=1.2e-10 Score=108.69 Aligned_cols=77 Identities=25% Similarity=0.397 Sum_probs=59.7
Q ss_pred CCeEEEEEEEeeecCCceEEEECC----eeccCCC--eEEEEE-------cCcEEEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNG----REISSGA--RYRVET-------AGGVFRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g----~~l~~~~--~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
|+.++|.|++.|.|.|+|+|+|++ ..+.... ...... .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999964 3332211 111111 123346999999999999999999999999
Q ss_pred ceeEEEEEec
Q psy7042 172 AHTSSRVKIG 181 (2245)
Q Consensus 172 ~~~~~~l~V~ 181 (2245)
...++.|+|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999873
No 157
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.12 E-value=2.6e-10 Score=102.93 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=64.2
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
+.|.|.+.|.|.|.+.|+|++..+......++...++...|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46999999999999999999999876654444444555579999999999999999999999999999999886
No 158
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.12 E-value=3e-10 Score=106.18 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=60.5
Q ss_pred CCeEEEEEEEecCCCceEEEeeC----ceeeecCCceEEE--E-------eCCeEEEEEcccCccCceeEEEEEEcCCcc
Q psy7042 198 GDNTKVKIFYAGDQPMEVSLTKN----GRVVQSDDRFKFT--V-------LDDYIIIFIKEIRKEDAGDYTVNLSNSSGS 264 (2245)
Q Consensus 198 G~~~~l~C~~~g~p~~~i~W~~~----g~~l~~~~~~~~~--~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 264 (2245)
|+.+.|.|.+.|.|.|.|+|+|+ |..+..+...... . ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 5555433221111 1 112357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7042 265 VSGTFTINI 273 (2245)
Q Consensus 265 ~~~~~~l~V 273 (2245)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999988
No 159
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.11 E-value=2.5e-10 Score=105.77 Aligned_cols=79 Identities=24% Similarity=0.571 Sum_probs=65.6
Q ss_pred eEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEE
Q psy7042 100 LVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVK 179 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 179 (2245)
+.+..|+.++|.|.+.|.|.|.+.|+|+|..+....... ......+|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 456779999999999999999999999999886544322 223345799999999999999999999999988888776
Q ss_pred e
Q psy7042 180 I 180 (2245)
Q Consensus 180 V 180 (2245)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 5
No 160
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.11 E-value=1.5e-10 Score=103.13 Aligned_cols=77 Identities=14% Similarity=0.292 Sum_probs=60.1
Q ss_pred ceEEeeccceeeecCccEEEEEEEEeeCCC-eEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKP-TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
|.+...|....+.+|++|+|.|.+.|.|.+ .+.|+|||..|.. ++ ..|+|.++ .+|+|.|+|+|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~--------~~--~~l~i~~~-~~dsG~Y~C~a~~~- 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET--------TT--NSYRIRAA-NNDSGEYRCQTQGS- 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec--------cC--CeEEEeec-ccCCEEeEEECCCC-
Confidence 445666777789999999999999998864 6999999987732 12 27999999 99999999999985
Q ss_pred ceeeEEEEEEE
Q psy7042 2167 GVKSTKAELII 2177 (2245)
Q Consensus 2167 G~~~~~~~l~V 2177 (2245)
..+..+.|+|
T Consensus 69 -~~S~~v~l~V 78 (78)
T cd05752 69 -SLSDPVHLEV 78 (78)
T ss_pred -cCCCCEEEeC
Confidence 3344455543
No 161
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.09 E-value=2.4e-10 Score=101.77 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=62.3
Q ss_pred CeeecCCCceEEcCCCeEEEEEEEecCCC-ceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCC
Q psy7042 184 PRIDRMPNALYIPEGDNTKVKIFYAGDQP-MEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSS 262 (2245)
Q Consensus 184 P~~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 262 (2245)
|.+...|+...+.+|+.++|+|.+.+.|. ..+.|||||..|... ...|.|.++ .+|+|.|+|+|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~- 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS- 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC-
Confidence 56677888899999999999999999885 579999999988322 236899999 99999999999875
Q ss_pred cceEEEEEEEE
Q psy7042 263 GSVSGTFTINI 273 (2245)
Q Consensus 263 g~~~~~~~l~V 273 (2245)
..+..++|+|
T Consensus 69 -~~S~~v~l~V 78 (78)
T cd05752 69 -SLSDPVHLEV 78 (78)
T ss_pred -cCCCCEEEeC
Confidence 4455555554
No 162
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.08 E-value=6.1e-10 Score=104.49 Aligned_cols=82 Identities=35% Similarity=0.605 Sum_probs=63.9
Q ss_pred CceecCCcceEEeC---CCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeec-cCCCeEEEEEEE
Q psy7042 91 PDFIVPLKDLVVPL---GKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVT-DVDNGDYTCEAY 166 (2245)
Q Consensus 91 P~~~~~~~~~~v~~---G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~ 166 (2245)
|.|...|.++.+.+ |+.++|.|.+.|+|.|.|+|+|++..+.......+...++ .|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 67778888776654 4679999999999999999999999885332222333334 48888876 499999999999
Q ss_pred cCccccee
Q psy7042 167 NSVGFAHT 174 (2245)
Q Consensus 167 n~~g~~~~ 174 (2245)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997765
No 163
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.07 E-value=5.2e-10 Score=100.89 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=57.3
Q ss_pred EEEEEEEEe-eCCCeEEEeeCCEeeCCC----CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2105 AQFQCTITG-CPKPTISWLKGSREITPS----ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2105 v~l~C~~~g-~P~p~i~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
+.|.|.+.+ .|.|.+.|+|+|+.+... .++.+...+....|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 688999999999988643 2344444455678999999999999999999999999887765
No 164
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.06 E-value=4.4e-10 Score=100.31 Aligned_cols=71 Identities=34% Similarity=0.689 Sum_probs=59.1
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEec
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
++|.|.+.|.|.|.+.|+|++..+... +......+. .|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFENFNK--TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeEecCCC--EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 579999999999999999999887643 333333233 69999999999999999999999999988888773
No 165
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.06 E-value=3.7e-10 Score=105.16 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=65.2
Q ss_pred CceEEcCCCeEEEEEEEec-----CCCceEEEeeCceeeecC--CceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCc
Q psy7042 191 NALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSD--DRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSG 263 (2245)
Q Consensus 191 ~~~~v~~G~~~~l~C~~~g-----~p~~~i~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 263 (2245)
....+.+|+.+.|.|.+.| .|.+.|.|||+|..+... ....+... ...|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCc
Confidence 4567889999999999998 688999999999765422 12222222 34799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy7042 264 SVSGTFTINI 273 (2245)
Q Consensus 264 ~~~~~~~l~V 273 (2245)
..+..+.|+|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9998888875
No 166
>KOG0613|consensus
Probab=99.05 E-value=2.5e-09 Score=136.83 Aligned_cols=260 Identities=17% Similarity=0.159 Sum_probs=151.4
Q ss_pred ceEEcCCCeEEEEEEecCcCCCe-EEEeeCCEeccCCc--eEEEEecCcEEEEEEeeeccCCCeEEEEEEecCceeeEEE
Q psy7042 1706 DLVVPLGKLLTLQCEATGTPVPK-CRWLRNGREISSGA--RYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 1782 (2245)
Q Consensus 1706 ~~~~~~G~~v~L~C~~~~~p~~~-v~W~~~~~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~ 1782 (2245)
.+.+..+..+++.|...+.+.+. ++|++++.....+. ............+.|..+...+.+.|.|.|.|..|.....
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~ 422 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTI 422 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccccc
Confidence 35566778899999998888776 99999876654433 2223334455669999999999999999999999988777
Q ss_pred EEEEecCCC-----ccccCCCceEEcCC--CeEEEEEEEeccCCc--EEEEEECCEEeecCCceEEEEcCCeEEEEEccc
Q psy7042 1783 SRVKIGTPP-----RIDRMPNALYIPEG--DNTKVKIFYAGDQPM--EVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEI 1853 (2245)
Q Consensus 1783 ~~l~V~~~p-----~~~~~~~~~~~~~g--~~~~l~C~~~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~~ 1853 (2245)
...+|...+ .............+ +.+.+.|...+.+.+ .++|++++-.. .....-...+...+|.+.-.
T Consensus 423 ~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~--s~~s~~l~r~~~tslLlk~~ 500 (1205)
T KOG0613|consen 423 AESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL--SDRSVTLTRDVLTSLLLKVA 500 (1205)
T ss_pred chhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccc--ccccccccccchhhheeecc
Confidence 766665432 22233333333444 778899988887755 44555554332 22222222334456777788
Q ss_pred CcccceEEEEEEEcCCeeeEEEEEEEEeC-CCCCCCCCceecccccceEEEEecCCCCCCCeeeeEEEEEEEcCCCCceE
Q psy7042 1854 RKEDAGDYTVNLSNSSGSVSGTFTINITG-LPGPPIGPLDVSEITKHTCTLHWNPPKYDGGLKVTHYVVERRDISMPHWI 1932 (2245)
Q Consensus 1854 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~~~~l~w~~p~~~~~~~~~~y~~~~~~~~~~~~~ 1932 (2245)
...+.|.|.-......|....+....... ...++ ..+...........+.|.+-..+.+..-..|..... ..+.|.
T Consensus 501 ~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~-~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~ 577 (1205)
T KOG0613|consen 501 SLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAP-KPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWR 577 (1205)
T ss_pred CCCccchhhhhhhccCCCCCCcccccccccccCCc-ccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCc
Confidence 88888888655544333222221111111 00111 011111112223344444322222222222222222 122233
Q ss_pred EEeeecCcceEEecCCCCCCeEEEEEEEECCCCCCCCCC
Q psy7042 1933 CISTTCHDTTFIVQGLTEGQEYLFHVMAVNENGMGPPLE 1971 (2245)
Q Consensus 1933 ~~~~~~~~~~~~i~~l~~~~~y~~~~~a~n~~g~~~~s~ 1971 (2245)
.-..... +...+.+..++..|.++..+.+..|.+.++.
T Consensus 578 ~~~~r~g-tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 578 VPESRPG-TTETIGSILPGHEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred ccccCCC-cccccccccccccceeehhhhhcccccCCCC
Confidence 2222222 7788999999999999999999999999885
No 167
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.05 E-value=6.2e-10 Score=102.64 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=60.8
Q ss_pred CccEEEEEEEEee--CCCeEEEeeCCEeeCCCCc----EE-EEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2102 NHNAQFQCTITGC--PKPTISWLKGSREITPSAR----HH-IFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2102 g~~v~l~C~~~g~--P~p~i~W~~~g~~l~~~~~----~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
|+.++|.|.+.|. |.|.|.|+++++.+..... .. .......+.|+|.+++.+|+|.|.|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 8999999998876543211 00 111223468999999999999999999999999999998
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 168
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.04 E-value=4.8e-10 Score=101.40 Aligned_cols=70 Identities=27% Similarity=0.579 Sum_probs=58.8
Q ss_pred EEEEEEEee-ecCCceEEEECCeeccCCCeE---EEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEE
Q psy7042 108 LTLQCEATG-TPVPKCRWLRNGREISSGARY---RVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR 177 (2245)
Q Consensus 108 v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 177 (2245)
++|.|.+.| .|.|.+.|+|+|..+....+. .+.......+|.|.+++.+|+|.|+|.|.|..|.+..++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999999 999999999999999865543 2444445568999999999999999999999998887764
No 169
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.04 E-value=1.2e-09 Score=99.91 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=59.4
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCCCC----cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc--eeeEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITPSA----RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG--VKSTKAEL 2175 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~~l 2175 (2245)
|++++|.|.+.|.|.|.+.|++.++...... +..+......+.|.|.+++.+|+|.|.|.|.|..+ ..+.++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432111 11112223356899999999999999999999887 66777888
Q ss_pred EEE
Q psy7042 2176 IIM 2178 (2245)
Q Consensus 2176 ~V~ 2178 (2245)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 170
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.02 E-value=7.2e-10 Score=99.68 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=52.7
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCc----cCceeEEEEEEcCCcceEE
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSG 267 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 267 (2245)
++|.|.+.|.|.|.|+|+|||..+.......+......+.|.|.++.. +|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 479999999999999999999998654333333334455788888754 7999999999999997543
No 171
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.01 E-value=1e-09 Score=101.07 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=58.1
Q ss_pred CCeEEEEEEEecCCCceEEEeeCce---e-e-ecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 198 GDNTKVKIFYAGDQPMEVSLTKNGR---V-V-QSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 198 G~~~~l~C~~~g~p~~~i~W~~~g~---~-l-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
|+.++|.|.+.|.|.|.++|||++. . + ................|.|.++..+|+|.|+|.|.|..|....++.|+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999732 1 1 111110001112335799999999999999999999999999999887
Q ss_pred E
Q psy7042 273 I 273 (2245)
Q Consensus 273 V 273 (2245)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 172
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.01 E-value=2.2e-09 Score=96.67 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=57.3
Q ss_pred ccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCC-CcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPS-ARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
|.+..+.+|+++.|.|.+.+ |.|.|.|+|||.+|..+ .++. ..++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~-~~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL-LYRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE-EECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 45678999999999999864 78999999999999876 4444 3444 59999999999999999999864
No 173
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.01 E-value=1.2e-09 Score=94.58 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=51.8
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCC-CeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSG-ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT 174 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 174 (2245)
+.|.|.+.|.|+|++.|+|||.++... .++. ..+. +|.|.+++.+|+|.|+|.|+|.......
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--VDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--eCCC--EEEECcCCHHHCEEEEEEEEccccceEe
Confidence 479999999999999999999998765 3443 2343 5999999999999999999998654444
No 174
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.00 E-value=2.2e-09 Score=100.52 Aligned_cols=83 Identities=17% Similarity=0.335 Sum_probs=64.5
Q ss_pred ccceeeecCccEEEEEEEEeeCCCeEEEeeC--------CEeeCCCCcEEEEEe-CcEEEEEEcCCCCCCCeEEEEEEEe
Q psy7042 2094 LRNANAIQNHNAQFQCTITGCPKPTISWLKG--------SREITPSARHHIFAE-GDTYTLIINSVYGVDADEYVCRAVN 2164 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~--------g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N 2164 (2245)
+.++.+.+|++|+|.|.+.|.|.|.|.|++. +.......|+.+..+ .....|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 3567899999999999999999999999863 222334456766443 3456899999999999999999998
Q ss_pred CCceeeEEEEEEE
Q psy7042 2165 KGGVKSTKAELII 2177 (2245)
Q Consensus 2165 ~~G~~~~~~~l~V 2177 (2245)
..+ .+.++.|+|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 543 367777765
No 175
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.00 E-value=1.8e-09 Score=97.24 Aligned_cols=69 Identities=19% Similarity=0.427 Sum_probs=58.0
Q ss_pred CCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCC-CeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSG-ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
.|.+..+..|+++.|.|.+.+ |.++|.|++||.+|..+ .++.+. ++ .|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 467788999999999999864 67899999999999876 455543 33 39999999999999999999875
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.00 E-value=1.3e-09 Score=100.99 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=62.6
Q ss_pred ccceeeecCccEEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEE
Q psy7042 2094 LRNANAIQNHNAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTK 2172 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 2172 (2245)
+....+.+|+.++|.|.+.+ .|.|.|.|+|++..+.... ...++ .|.|.+++.+|+|.|.|.|.|.+|..+..
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~~---~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~ 81 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---MDFNG---ILTIRNVQLSDAGTYVCTGSNMLDTDEAT 81 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---cccCC---EEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence 45567889999999999974 7999999999987654321 12223 79999999999999999999999999988
Q ss_pred EEE
Q psy7042 2173 AEL 2175 (2245)
Q Consensus 2173 ~~l 2175 (2245)
+.|
T Consensus 82 ~~l 84 (85)
T cd05754 82 ATL 84 (85)
T ss_pred EEE
Confidence 876
No 177
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.99 E-value=1.5e-09 Score=97.08 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=50.7
Q ss_pred EEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCc----cCceeEEEEEEcCCcceEE
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRK----EDAGDYTVNLSNSSGSVSG 267 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 267 (2245)
+.|.|.+.|.|.|+|+|+|+|.++.......+......+.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 479999999999999999999987543332233333344788877764 3789999999999998654
No 178
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.99 E-value=1.9e-09 Score=96.49 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=50.1
Q ss_pred EEEEEEEecCCCceEEEeeCceeeec--CCceEEEEeCCeEEEEEcccC----ccCceeEEEEEEcCCcceEE
Q psy7042 201 TKVKIFYAGDQPMEVSLTKNGRVVQS--DDRFKFTVLDDYIIIFIKEIR----KEDAGDYTVNLSNSSGSVSG 267 (2245)
Q Consensus 201 ~~l~C~~~g~p~~~i~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~~~----~~d~G~Y~C~a~n~~g~~~~ 267 (2245)
+.|.|.+.|+|.|.|+|+|+|..+.. +.++.+ ....++|.|.++. .+|+|.|+|.|.|..|...+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 46999999999999999999997643 334433 3334578888764 24799999999999997644
No 179
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.99 E-value=3.2e-09 Score=99.24 Aligned_cols=80 Identities=26% Similarity=0.504 Sum_probs=66.8
Q ss_pred eeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEE
Q psy7042 2098 NAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELI 2176 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 2176 (2245)
.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.....+.... ......|.|.++..+|+|.|.|.|.|..|..+.++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 46689999999999999999999999999887655443322 23345799999999999999999999999998888886
Q ss_pred E
Q psy7042 2177 I 2177 (2245)
Q Consensus 2177 V 2177 (2245)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 4
No 180
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.98 E-value=4e-09 Score=97.36 Aligned_cols=88 Identities=25% Similarity=0.431 Sum_probs=72.1
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCC-ceEEEECCeeccC--CCeEEEEEc----CcEEEEEEeeeccCC-CeEE
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVP-KCRWLRNGREISS--GARYRVETA----GGVFRLHFNEVTDVD-NGDY 161 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~l~~--~~~~~~~~~----~~~~~L~i~~~~~~d-~G~Y 161 (2245)
||.| ...+.+.+.+|+.++|.|.+.+.|+| .|.|.+++..|.. ..+|.+... +....|+|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 5666 66677889999999999999777776 5899988887765 358887654 466789999998766 7999
Q ss_pred EEEEEcCcccceeEEEE
Q psy7042 162 TCEAYNSVGFAHTSSRV 178 (2245)
Q Consensus 162 ~C~a~n~~g~~~~~~~l 178 (2245)
.|.|.|..|.+...+.|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999999888776
No 181
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.95 E-value=2.8e-09 Score=99.68 Aligned_cols=82 Identities=18% Similarity=0.401 Sum_probs=63.1
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCC--cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC-ceeeE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSA--RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG-GVKST 2171 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~ 2171 (2245)
..+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+.... ..++..... .|.|.+++.+|+|.|.|.|.|.. +....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 4557889999999999987 899999999998776542 112222222 49999999999999999999765 44566
Q ss_pred EEEEEEEc
Q psy7042 2172 KAELIIMT 2179 (2245)
Q Consensus 2172 ~~~l~V~~ 2179 (2245)
++.|.|.+
T Consensus 81 ~~~l~V~~ 88 (89)
T cd04979 81 TYSLNVLE 88 (89)
T ss_pred EEEEEEec
Confidence 78887753
No 182
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.95 E-value=2.2e-09 Score=99.06 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=60.3
Q ss_pred CCeEEEEEEEeee--cCCceEEEECCeeccCCCe----EE-EEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEE
Q psy7042 105 GKLLTLQCEATGT--PVPKCRWLRNGREISSGAR----YR-VETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR 177 (2245)
Q Consensus 105 G~~v~L~C~~~g~--p~~~i~W~~~g~~l~~~~~----~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 177 (2245)
|+.++|.|.+.|. |.+.|.|++++..+..... .. .........|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 8899999998876542211 11 111123457999999999999999999999999999988
Q ss_pred EEe
Q psy7042 178 VKI 180 (2245)
Q Consensus 178 l~V 180 (2245)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 183
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.95 E-value=9.7e-09 Score=105.63 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=84.8
Q ss_pred EEEEeeeccCCCeEEEEEEecCceeeEEEEEEEecCCCccccCCCceEEcCCCeEEEEEEEecc-CC-cEEEEEECCEEe
Q psy7042 1754 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGD-QP-MEVSLTKNGRVV 1831 (2245)
Q Consensus 1754 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~g~~l 1831 (2245)
+|+|.+++.+|+|.|.|.+.+..|.......|.|..+|.+...+......+|+.+.|.|.+.|. |. +.|.|+++|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 5999999999999999999998888888999999999998766665555578999999999996 54 589999998542
Q ss_pred ec----CCceE---EEEc--CC---eEEEEEcccCcccceEEEEEEEcCC
Q psy7042 1832 QS----DDRFK---FTVL--DD---YIIIFIKEIRKEDAGDYTVNLSNSS 1869 (2245)
Q Consensus 1832 ~~----~~~~~---~~~~--~~---~~~l~i~~~~~~d~G~Y~C~a~n~~ 1869 (2245)
.. ..... .... +. ...|.+..-...+...|+|.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 11 01111 1111 11 1356665555455668999997653
No 184
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.94 E-value=4.1e-09 Score=98.72 Aligned_cols=83 Identities=16% Similarity=0.328 Sum_probs=63.9
Q ss_pred CcceEEeCCCeEEEEEEEeeecCCceEEEEC--------CeeccCCCeEEEEEc-CcEEEEEEeeeccCCCeEEEEEEEc
Q psy7042 97 LKDLVVPLGKLLTLQCEATGTPVPKCRWLRN--------GREISSGARYRVETA-GGVFRLHFNEVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--------g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n 167 (2245)
+.++.+.+|++++|+|.+.+.|.+.|.|++. +.....+.|+..... .+..+|+|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 4568899999999999999999999999863 222334457765332 3556899999999999999999998
Q ss_pred CcccceeEEEEEe
Q psy7042 168 SVGFAHTSSRVKI 180 (2245)
Q Consensus 168 ~~g~~~~~~~l~V 180 (2245)
.. ....++.|+|
T Consensus 84 ~~-~~~~~~~l~v 95 (95)
T cd07701 84 MP-VKTSKAYLTV 95 (95)
T ss_pred ec-CccEEEEEEC
Confidence 53 3366777765
No 185
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.94 E-value=2.9e-09 Score=95.97 Aligned_cols=70 Identities=24% Similarity=0.585 Sum_probs=56.9
Q ss_pred EEEEEEEee-ecCCceEEEECCeeccCC----CeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEE
Q psy7042 108 LTLQCEATG-TPVPKCRWLRNGREISSG----ARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR 177 (2245)
Q Consensus 108 v~L~C~~~g-~p~~~i~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 177 (2245)
+.|+|.+.+ .|.+.+.|+|+|..+... .++.+...+....|.|.+++.+|+|.|+|.|+|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 688899999999988642 2345544455567999999999999999999999998887765
No 186
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.94 E-value=2.8e-09 Score=97.43 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=58.4
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccCCC----eEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcc--cceeEEEE
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISSGA----RYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG--FAHTSSRV 178 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 178 (2245)
|++++|+|.+.|.|.+.+.|++++....... +..+.......+|.|.+++.+|+|.|.|.|.|..+ ..+.++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 8899999999999999999998776432111 22222223356899999999999999999999876 56667777
Q ss_pred Eec
Q psy7042 179 KIG 181 (2245)
Q Consensus 179 ~V~ 181 (2245)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 187
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=6.7e-09 Score=96.53 Aligned_cols=82 Identities=18% Similarity=0.403 Sum_probs=63.5
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEECCeec--------cCCCeEEEEEcC-cEEEEEEeeeccCCCeEEEEEEEcC
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREI--------SSGARYRVETAG-GVFRLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l--------~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
.++.+.+|+++.|.|.+.+.|.|.|.|+|++..+ ..+.|+.+.... +...|.|.+++.+|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 4678999999999999999999999999977543 134466654333 356899999999999999999987
Q ss_pred cccceeEEEEEe
Q psy7042 169 VGFAHTSSRVKI 180 (2245)
Q Consensus 169 ~g~~~~~~~l~V 180 (2245)
.-..+..++|+|
T Consensus 84 ~~~~~~~~~~~v 95 (95)
T cd05882 84 MPVRTAKATVTV 95 (95)
T ss_pred eccccEEEEEEC
Confidence 334455666654
No 188
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.93 E-value=8.4e-09 Score=95.90 Aligned_cols=81 Identities=15% Similarity=0.330 Sum_probs=61.3
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEee--------CCCCcEEEEEeC-cEEEEEEcCCCCCCCeEEEEEEEeC
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFAEG-DTYTLIINSVYGVDADEYVCRAVNK 2165 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~ 2165 (2245)
.++++.+|++|.|.|.+.|.|.|.|.|+|+++.+ ....++.+.... ....|.|.+|..+|+|.|+|.|..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t- 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT- 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-
Confidence 5678999999999999999999999999977543 123455544332 356899999999999999999987
Q ss_pred CceeeEEEEEE
Q psy7042 2166 GGVKSTKAELI 2176 (2245)
Q Consensus 2166 ~G~~~~~~~l~ 2176 (2245)
.-..++.+.|+
T Consensus 84 ~~~~~~~~~~~ 94 (95)
T cd05882 84 MPVRTAKATVT 94 (95)
T ss_pred eccccEEEEEE
Confidence 22334445554
No 189
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.92 E-value=3.1e-09 Score=96.58 Aligned_cols=70 Identities=29% Similarity=0.508 Sum_probs=53.9
Q ss_pred EEEEEEEeeecCCceEEEECCeecc--------CCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee-EEEE
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREIS--------SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT-SSRV 178 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l 178 (2245)
|+|.|.+.|.|.|.|.|+|++.... ...++.+...+ +|.|.+++.+|+|.|+|.|.|..|.+.+ ++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC---eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999643211 23455554333 5999999999999999999999998744 6666
Q ss_pred Ee
Q psy7042 179 KI 180 (2245)
Q Consensus 179 ~V 180 (2245)
+|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 54
No 190
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.89 E-value=5.4e-09 Score=96.45 Aligned_cols=77 Identities=18% Similarity=0.354 Sum_probs=62.2
Q ss_pred eeeecCccEEEEEEEEe-----eCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeE
Q psy7042 2097 ANAIQNHNAQFQCTITG-----CPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKST 2171 (2245)
Q Consensus 2097 ~~~~~g~~v~l~C~~~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 2171 (2245)
+.+.+|..+.|.|...+ +|.|.|.|+||++++....+. +. .+. .|.|.++..+|+|.|+|.|.|.+|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 45788999999998753 267899999999999866533 33 332 8999999999999999999999998876
Q ss_pred EEEEEE
Q psy7042 2172 KAELII 2177 (2245)
Q Consensus 2172 ~~~l~V 2177 (2245)
.+.+++
T Consensus 81 ~~t~t~ 86 (92)
T cd05757 81 NVTRTI 86 (92)
T ss_pred EEEEEE
Confidence 666555
No 191
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.88 E-value=7.3e-09 Score=95.89 Aligned_cols=79 Identities=20% Similarity=0.204 Sum_probs=64.9
Q ss_pred ecCCCceEEcCCCeEEEEEEEec-CCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcce
Q psy7042 187 DRMPNALYIPEGDNTKVKIFYAG-DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV 265 (2245)
Q Consensus 187 ~~~~~~~~v~~G~~~~l~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 265 (2245)
...|....+.+|++++|.|.+.+ .|.+.|.|++++..+.... ......|.|.++..+|+|.|+|.|.|..|..
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc------cccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 34567888999999999999874 7889999999987653321 1123479999999999999999999999999
Q ss_pred EEEEEE
Q psy7042 266 SGTFTI 271 (2245)
Q Consensus 266 ~~~~~l 271 (2245)
..++.|
T Consensus 79 ~~~~~l 84 (85)
T cd05754 79 EATATL 84 (85)
T ss_pred eEEEEE
Confidence 888876
No 192
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.88 E-value=7e-09 Score=96.93 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=63.7
Q ss_pred CCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCC----eEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcc-
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGA----RYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG- 170 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g- 170 (2245)
+|+.+.+.+|+.+.|.|.+.+ |.+.+.|+|++..+.... ++... .+ .|.|.+++.+|+|.|+|.|.+..+
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~--~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--ED--GLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CC--CEEEccCCHHHCEEEEEEEecCccc
Confidence 456778999999999999987 888999999998877542 33332 22 389999999999999999997654
Q ss_pred cceeEEEEEecC
Q psy7042 171 FAHTSSRVKIGT 182 (2245)
Q Consensus 171 ~~~~~~~l~V~~ 182 (2245)
....+.+|.|..
T Consensus 77 ~~~~~~~l~V~~ 88 (89)
T cd04979 77 QTLATYSLNVLE 88 (89)
T ss_pred eeEeEEEEEEec
Confidence 455567777653
No 193
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.87 E-value=1.4e-08 Score=94.84 Aligned_cols=81 Identities=28% Similarity=0.567 Sum_probs=66.7
Q ss_pred eEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEE-EEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEE
Q psy7042 100 LVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRV-ETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRV 178 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 178 (2245)
+.+.+|+.+.|.|.+.+.|.+.+.|+|++..+........ ........|.|.+++.+|+|.|.|.|.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 4577899999999999999999999999998875543332 223344579999999999999999999999998888877
Q ss_pred Ee
Q psy7042 179 KI 180 (2245)
Q Consensus 179 ~V 180 (2245)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 194
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.86 E-value=0.004 Score=88.84 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=112.4
Q ss_pred cceEEecceeeeeceEEECCCccCCcEEEEE--EEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEE
Q psy7042 32 AIWLKCNDYNVLECSFSVLNLVEGNDYEFRI--IAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLT 109 (2245)
Q Consensus 32 ~~w~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~ 109 (2245)
-+|.-|+.... +..=...|+.-+.++.|+- .|.|..+... ....|++.--.+.--+...-....+..|+.+.
T Consensus 926 ~~w~~~d~~~~-~~~~~~~n~~y~~a~~~~l~~ta~n~~s~~~-----~~~~vt~~~~~~m~~l~v~~~p~v~~~~~~~~ 999 (2740)
T TIGR00864 926 FKWTIDDKPFF-TFQNTVFNVIYQHAAVFKLSLTAMNHVSNLT-----EDFNVTVDRLNPMQGLQVKGVPAVLPPGATLA 999 (2740)
T ss_pred EEEEeCCeeEE-EEecceEEEEeecccEEEEEEEEeccccceE-----EEEEEEehhcccccccEEecCccccCCCceEE
Confidence 46666654211 1111233455677777766 5777665442 22222211101111122222234567799999
Q ss_pred EEEEE--eeecCCceEEEE-CCeecc--CCCeEEEE--EcC-c-EEEEEEeee--ccCCCeEEEEE--EEcCcccceeEE
Q psy7042 110 LQCEA--TGTPVPKCRWLR-NGREIS--SGARYRVE--TAG-G-VFRLHFNEV--TDVDNGDYTCE--AYNSVGFAHTSS 176 (2245)
Q Consensus 110 L~C~~--~g~p~~~i~W~~-~g~~l~--~~~~~~~~--~~~-~-~~~L~i~~~--~~~d~G~Y~C~--a~n~~g~~~~~~ 176 (2245)
|+-.+ .+.....+.|.. ||..-. ....|.-. -.+ . ...|.=+++ .....|.|+-. |.|..|.....+
T Consensus 1000 ~~~~~~vd~~~~~~~~w~fgDG~~~~~~~~~py~~~~~~~~~~~~q~l~eqnptH~Y~~~G~YTVtLtVsN~~~~it~~i 1079 (2740)
T TIGR00864 1000 LTAGVLIDMAVEAAFLWNFGDGEQALFEFKPPYNESFPCPDPSPAQVLLEHNVMHIYAAPGEYLATVLASNAFENISQQI 1079 (2740)
T ss_pred EeeeeEeecccceEEEEEeCCCCeeEEeccCCCcccccCCCCccceeecccCcceEECCCCcEEEEEEEEcCCCccceEE
Confidence 98875 444455688866 554211 11111100 000 0 011211222 23457899865 557777777778
Q ss_pred EEEecC-CCeeecCCCceEEcCCCeEEEEEEEecCCC-ceEEEeeC-ceeeecCCceEEEEeCCeEEEEEcccCccCcee
Q psy7042 177 RVKIGT-PPRIDRMPNALYIPEGDNTKVKIFYAGDQP-MEVSLTKN-GRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGD 253 (2245)
Q Consensus 177 ~l~V~~-~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~-~~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 253 (2245)
.+.|.. .|.+.....+..+..|+++.|.=...+.|. ..+.|..+ |........- .-. -.....|.
T Consensus 1080 ~VsV~~~~p~v~~~~~p~~~~~g~tv~F~~~ss~s~~~~~y~WdFGDGs~~~t~~~~-----~~~-------HtY~~~Gt 1147 (2740)
T TIGR00864 1080 NMSVRAILPRVAIGTEDGLLLAGKPADFEAHPLPSPGGIHYEWDFGDGSALLQGRQP-----AAA-------HTFAKRGP 1147 (2740)
T ss_pred EEEEecccceeeeecCcccccCCceEEEeecccCCCCCcEEEeECCCCCcccccCCC-----cce-------EEccCCcc
Confidence 888865 345555555666788999999776555553 36888764 4432211110 000 12346777
Q ss_pred EEEE--EEcCCcceEEEEEEEEe
Q psy7042 254 YTVN--LSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 254 Y~C~--a~n~~g~~~~~~~l~V~ 274 (2245)
|+.. +.|..|.......+.+.
T Consensus 1148 YtV~LTV~n~vgs~a~~t~v~v~ 1170 (2740)
T TIGR00864 1148 FHVCLEVNNTISGAAACADMFAF 1170 (2740)
T ss_pred EEEEEEEEcCCCCceeeEEEEEe
Confidence 7754 44666654444444443
No 195
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.83 E-value=8.8e-09 Score=93.68 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=57.3
Q ss_pred eeecCccEEEEEEEE-eeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceee-EEEEE
Q psy7042 2098 NAIQNHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAEL 2175 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l 2175 (2245)
.+.+|+.|+|.|.+. +.|.+.+.|+|+|..+.... ....|.|..++.+|+|.|+|.|.|..|... ..+.|
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i 81 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEE
Confidence 588999999999985 56778899999998764221 123799999999999999999999999763 33555
Q ss_pred EE
Q psy7042 2176 II 2177 (2245)
Q Consensus 2176 ~V 2177 (2245)
+|
T Consensus 82 ~~ 83 (83)
T cd05753 82 TV 83 (83)
T ss_pred EC
Confidence 43
No 196
>KOG4258|consensus
Probab=98.83 E-value=1.3e-07 Score=114.40 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=102.9
Q ss_pred ccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeec--------------CCCceEEeccee--------eeceEEEec
Q psy7042 907 NLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDY--------------NSTVWTKVSSYV--------TTPFVRVRN 964 (2245)
Q Consensus 907 ~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~--------------~~~~~~~~~~~~--------~~~~~~i~~ 964 (2245)
++.....+.+++.|+|.+-....-....+|.+.|++. ....|....... ...-+.+.+
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~ 572 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDG 572 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhc
Confidence 3444556788999999875443334678999988752 222354443322 223578999
Q ss_pred CCCCceeeEEEEEEeccccCC-CccccCcccccCCCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEEEec
Q psy7042 965 LAIGSTYEFRVMAENQYGLSK-PALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLI 1043 (2245)
Q Consensus 965 L~p~~~y~~~v~a~n~~g~~~-~s~~~~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~~~~ 1043 (2245)
|+|.|.|.|-|++....-... ....|....++|..+.|++|...-....+++.|.|+|.||..+||. +.+|.|.|+..
T Consensus 573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~-lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGN-LTHYLVVWERQ 651 (1025)
T ss_pred CCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCc-eeEEEEEEEec
Confidence 999999999999984332222 1245678889999999999998888888888999999999999886 99999999876
Q ss_pred CCcc
Q psy7042 1044 SDDK 1047 (2245)
Q Consensus 1044 ~~~~ 1047 (2245)
.++.
T Consensus 652 ~~~~ 655 (1025)
T KOG4258|consen 652 AEDG 655 (1025)
T ss_pred cCCc
Confidence 6543
No 197
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.80 E-value=2.5e-08 Score=92.30 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=60.2
Q ss_pred eeeecCccEEEEEEEEeeCCCeEEEeeC--CEe----eCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEE-eCCcee
Q psy7042 2097 ANAIQNHNAQFQCTITGCPKPTISWLKG--SRE----ITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV-NKGGVK 2169 (2245)
Q Consensus 2097 ~~~~~g~~v~l~C~~~g~P~p~i~W~~~--g~~----l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~G~~ 2169 (2245)
+.+.+|++++|.|.. +.|.|.+.|||+ +.. +..+.++.. .++ .|.|.++..+|+|.|.|.|. |..|..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~---~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TER---GLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecC---eEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 457899999999996 589999999983 322 112334433 222 59999999999999999998 678878
Q ss_pred eEEEEEEEEc
Q psy7042 2170 STKAELIIMT 2179 (2245)
Q Consensus 2170 ~~~~~l~V~~ 2179 (2245)
...+.|.|.+
T Consensus 81 ~~~~~l~v~~ 90 (91)
T cd05871 81 LAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEec
Confidence 8889998864
No 198
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.80 E-value=1.3e-08 Score=93.62 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=57.0
Q ss_pred eeecCccEEEEEEEEeeCCCeEEEeeCCEeeCC--------------CCcEEEEE---eCcEEEEEEcCCCCCCCeEEEE
Q psy7042 2098 NAIQNHNAQFQCTITGCPKPTISWLKGSREITP--------------SARHHIFA---EGDTYTLIINSVYGVDADEYVC 2160 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~--------------~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C 2160 (2245)
.+.+|++|+|.|.+.+.|.+.|.|+++++.... ..++.+.. +.+...|+|.+++.+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 578999999999999999999999987743211 22333332 3445689999999999999999
Q ss_pred EEEeCCceee
Q psy7042 2161 RAVNKGGVKS 2170 (2245)
Q Consensus 2161 ~a~N~~G~~~ 2170 (2245)
.+.|..++.+
T Consensus 83 ~v~~~~~~~~ 92 (94)
T cd07690 83 EVEDKKEEVE 92 (94)
T ss_pred EECCccceEE
Confidence 9999987653
No 199
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.79 E-value=1.2e-08 Score=93.17 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=57.8
Q ss_pred cceEEeCCCeEEEEEEE-eeecCCceEEEECCeec--cCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 98 KDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGREI--SSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~l--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
+.+.+.+|+.+.|.|.. .|.|.+.|.|++++..+ ..+.|..+...+| .|.|.+++.+|+|.|+|.|+|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 34678999999999987 67899999999998764 3344444444344 49999999999999999999976543
No 200
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.79 E-value=9.8e-09 Score=93.68 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=57.6
Q ss_pred ceeeecCccEEEEEEE-EeeCCCeEEEeeCCEee--CCCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2096 NANAIQNHNAQFQCTI-TGCPKPTISWLKGSREI--TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l--~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
...+.+|+.+.|.|.. .|.|.|.|.|+|++.++ ....+..+.. +| .|.|.+|+.+|+|.|+|.|.|.++..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G---~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG---NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC---cEEEeecCHhhCceeEEEEEecccCC
Confidence 3468899999999987 58999999999998764 3334433444 56 69999999999999999999987654
No 201
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.78 E-value=1.7e-08 Score=93.13 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=61.4
Q ss_pred ceEEcCCCeEEEEEEEec-----CCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceE
Q psy7042 192 ALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVS 266 (2245)
Q Consensus 192 ~~~v~~G~~~~l~C~~~g-----~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 266 (2245)
...+.+|..+.|.|.+.+ +|.|.+.|||||+++...... +. ....|.|.++..+|+|.|+|.|.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee---cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 456889999999998653 267899999999998755432 22 334799999999999999999999988766
Q ss_pred EEEEEEE
Q psy7042 267 GTFTINI 273 (2245)
Q Consensus 267 ~~~~l~V 273 (2245)
..++.++
T Consensus 80 ~~~t~t~ 86 (92)
T cd05757 80 YNVTRTI 86 (92)
T ss_pred EEEEEEE
Confidence 6555544
No 202
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.77 E-value=1.1e-08 Score=93.09 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=61.1
Q ss_pred ccceeeecCccEEEEEE-EEeeCCCeEEEeeCCEe-eCCCCcEEEEEeCcEEEEEEcCCCCCCCe-EEEEEEEeCCcee
Q psy7042 2094 LRNANAIQNHNAQFQCT-ITGCPKPTISWLKGSRE-ITPSARHHIFAEGDTYTLIINSVYGVDAD-EYVCRAVNKGGVK 2169 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~-~~g~P~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~~ 2169 (2245)
.....+.+|+.+.|.|. ..|+|.|.|.|++++.. +..+.|+.+..+| .|.|.+|+.+|+| .|.|.|.|.+...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 35678999999999997 58999999999987754 4556677776777 6999999999999 7999999986443
No 203
>KOG4258|consensus
Probab=98.77 E-value=1.2e-07 Score=114.55 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=86.4
Q ss_pred eEEEecCCCCceeeEEEEEEeccccCC-CccccCcccccCCCCCC-C-CCCCCeeE-eecCCeEEEEecCCCCCCCCccc
Q psy7042 959 FVRVRNLAIGSTYEFRVMAENQYGLSK-PALTIDPIKAKHPFDVP-G-APGAPKGV-DSTEDSISLVWSKPRHDGGSPIQ 1034 (2245)
Q Consensus 959 ~~~i~~L~p~~~y~~~v~a~n~~g~~~-~s~~~~~~~~~t~~~~p-~-~p~~~~~~-~~~~~~v~l~W~~p~~~~~~~i~ 1034 (2245)
.+.|.+|..++.|.+.+.|+|..+... .|.. ..+...|....- . -|.-+... ..+...+.|+|.+|..++|. |.
T Consensus 783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNGl-i~ 860 (1025)
T KOG4258|consen 783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNGL-IL 860 (1025)
T ss_pred hhhhhccccchhhhhhHhhhcccccccccchh-hhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCcc-EE
Confidence 455889999999999999999887611 1111 122222222111 1 12212222 23778999999999999987 99
Q ss_pred eEEEEEEecCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecC
Q psy7042 1035 RYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAA 1114 (2245)
Q Consensus 1035 ~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~ 1114 (2245)
.|.|.|+..++.....|-.. ...+.+++ ..+..|.++ .|..+|+|..-+
T Consensus 861 ~Y~Vk~r~~~~et~v~cvsR-----------------------~~~~k~~g-------v~l~~l~~G-~y~~~vratSla 909 (1025)
T KOG4258|consen 861 NYEVKYRRNGDETHVECVSR-----------------------MDYAKAGG-------VYLKRLNPG-NYSVRVRATSLA 909 (1025)
T ss_pred EEEEEEeeccCcchhhhhhh-----------------------hhhhhcCc-------eEEEecCCC-cEEEEEEEEeec
Confidence 99999998776544333111 00111111 136677765 599999999999
Q ss_pred CCCCCCCCCccee
Q psy7042 1115 GQGPWSSSSDIIM 1127 (2245)
Q Consensus 1115 G~~~~s~~~~~~~ 1127 (2245)
|.|++...+....
T Consensus 910 Gng~~t~~~~~~v 922 (1025)
T KOG4258|consen 910 GNGSWTESVIFYV 922 (1025)
T ss_pred cCCCCcCCcceEE
Confidence 9999887665544
No 204
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.75 E-value=1.9e-08 Score=91.55 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=56.5
Q ss_pred ceEEeCCCeEEEEEEEe-eecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee-EE
Q psy7042 99 DLVVPLGKLLTLQCEAT-GTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT-SS 176 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~ 176 (2245)
...+.+|++++|.|.+. +.+.+++.|+|+|..+... .....|.|.+++.+|+|.|+|.|.+..|...+ ..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~ 79 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPV 79 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCceecCCCE
Confidence 34688999999999985 4566789999999876521 11235999999999999999999999885444 34
Q ss_pred EEE
Q psy7042 177 RVK 179 (2245)
Q Consensus 177 ~l~ 179 (2245)
.|+
T Consensus 80 ~i~ 82 (83)
T cd05753 80 SIT 82 (83)
T ss_pred EEE
Confidence 444
No 205
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.74 E-value=1e-07 Score=86.63 Aligned_cols=83 Identities=16% Similarity=0.252 Sum_probs=68.7
Q ss_pred ceeeecCccEEEEEEEEeeCCCe-EEEeeCCEeeCCCCcEEEEEeC-----cEEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKPT-ISWLKGSREITPSARHHIFAEG-----DTYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
.+.|.+|+.+.|.|.+.++|+|+ +.|.+++..+.......+.... -.+.|.|.+++.+|+|.|+|.|.|..+++
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 35789999999999999999998 9999999877654432222221 22589999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy7042 2170 STKAELIIM 2178 (2245)
Q Consensus 2170 ~~~~~l~V~ 2178 (2245)
+..+.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999999875
No 206
>KOG0613|consensus
Probab=98.74 E-value=9.4e-07 Score=113.97 Aligned_cols=593 Identities=18% Similarity=0.191 Sum_probs=293.4
Q ss_pred eEeeCCCeEEEEEeeeecCCCeEEEEeCCeEe------eccCeEEEEecCCeEEEEEcCCCCCcCEEEEEEEEeCCCCce
Q psy7042 586 AYFDKGENVVVKIPFTGYPKPKITWYRDNEVI------ESGGHFHVETSERHAILTIRDASNVDTAPYRVVAENDLGMDS 659 (2245)
Q Consensus 586 ~~~~~g~~~~l~C~~~g~p~~~i~W~~~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~a~n~~g~~~ 659 (2245)
....++....|.-.+.|.|.+...|-..+..+ ...............++-+..-..++.+.|...-.+..+-..
T Consensus 50 ~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~~~~ 129 (1205)
T KOG0613|consen 50 LQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMVPATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALIDVVP 129 (1205)
T ss_pred eeccCCcceeeeeeeccccccCCCCcccccchhhcccccccccccccccccccccccccccccccccccccccccCCccc
Confidence 33555666677777777777666665544422 111111111111223333334444455555555444454222
Q ss_pred eEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEceeeeeeEEEecCCCCCEEE
Q psy7042 660 AIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYE 739 (2245)
Q Consensus 660 ~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~L~p~t~y~ 739 (2245)
.........++.+|.+-....+....+...|..|..+++.....|+++.+......|..........-.+..+. |.
T Consensus 130 ~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~----~e 205 (1205)
T KOG0613|consen 130 SPEVCQQEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAH----YE 205 (1205)
T ss_pred cchhhhhcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccccCCcceeccc----cc
Confidence 22223333445555666667778889999999999999999999999999888888876654433333344443 45
Q ss_pred EEEEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeecccccccccCCceEEEEeeeccCcccccccccee
Q psy7042 740 FRVYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKADEKVSDYDQYVFDIYSKYVPQPVDIKTSSVY 819 (2245)
Q Consensus 740 ~~v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (2245)
++++++-..|...+-....+. .
T Consensus 206 ~~v~~v~s~gqp~~~~~~~~~-----------------------------g----------------------------- 227 (1205)
T KOG0613|consen 206 SRVRAVVSAGQPEPLERWEIL-----------------------------G----------------------------- 227 (1205)
T ss_pred eeEEEEEecCCCccchhhhhc-----------------------------c-----------------------------
Confidence 555555445543322110000 0
Q ss_pred cccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcceEEEEEEe
Q psy7042 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEVL 899 (2245)
Q Consensus 820 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (2245)
.+.
T Consensus 228 -----------------------------------------------------------------------------~~i 230 (1205)
T KOG0613|consen 228 -----------------------------------------------------------------------------ELI 230 (1205)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeee-cCCCceEEecc-eeeeceEEEecCCCCceeeEEEEE
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKD-YNSTVWTKVSS-YVTTPFVRVRNLAIGSTYEFRVMA 977 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~-~~~~~~~~~~~-~~~~~~~~i~~L~p~~~y~~~v~a 977 (2245)
.+++.|..-....-....+.+.|..+.-+.-..+.+|.++... .+...|..... .....+++...-..+-.+.+.+..
T Consensus 231 ~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~ 310 (1205)
T KOG0613|consen 231 APGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE 310 (1205)
T ss_pred CCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeE
Confidence 1112222111122233445566655432222244455555444 22222222222 223455666666777788888888
Q ss_pred EeccccCCCccccCcccccCCCCCC-CCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEEEecCCccceecccccc
Q psy7042 978 ENQYGLSKPALTIDPIKAKHPFDVP-GAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISDDKWIKASMAHI 1056 (2245)
Q Consensus 978 ~n~~g~~~~s~~~~~~~~~t~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~ 1056 (2245)
.-..|.+.+...+....+..+..+| ..+..+.+.....+.+.+.|.-+...-.....+|...-.......|..+.....
T Consensus 311 ~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1205)
T KOG0613|consen 311 EAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTV 390 (1205)
T ss_pred EeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccc
Confidence 8777777665444333333333333 356666666777788888887654432222344433322222222221111110
Q ss_pred CCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCCCCCCCCCCcceeecCCCCCCc
Q psy7042 1057 PDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSSSDIIMCCAPPCAPK 1136 (2245)
Q Consensus 1057 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G~~~~s~~~~~~~~~~~p~~p~ 1136 (2245)
....+.+.++.++..|.++|.|.|..|.........+......-.++.
T Consensus 391 --------------------------------ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~ 438 (1205)
T KOG0613|consen 391 --------------------------------TSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPK 438 (1205)
T ss_pred --------------------------------cCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCcc
Confidence 111236889999999999999999999866554443322111111111
Q ss_pred cccCCCceeEEEEcCCeEEEEEEeeecCCCcceEEe---CCeecCCCCcEEEEEccceEEEEecCccccccceeEEEEEE
Q psy7042 1137 ITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTV---NGDEVSPDGRIKFETSENQTIYRNKSAKRATDSGSYTIQLV 1213 (2245)
Q Consensus 1137 ~~~~~~~~~~~v~~~~~~~l~~~~~~~p~~~v~W~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~a~ 1213 (2245)
+.-+.... ......+.+.++|...+.+.+ +.|.. ++.+.. .+..-...+....+.+.- ..+.+++.|.....
T Consensus 439 ~kk~~~~t-~~L~~~~~i~~~~~~~s~~~~-~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~-~~~~~~A~~~~a~~ 513 (1205)
T KOG0613|consen 439 FKKDVSTT-DLLTVKDEITVRTPDSSTSMP-MTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKV-ASLSDGAQYTRALR 513 (1205)
T ss_pred cccccccc-ccccCCcccccccCCCCcccc-ceeEeeccCCcccc--cccccccccchhhheeec-cCCCccchhhhhhh
Confidence 11111101 111223566677777777655 55544 333322 111111112222222222 23478888866555
Q ss_pred cCCcceeEEEEEEEECCCCCCCCCceeeeccCCcEEEEecCCCCCCCcceeeeEEEEeeccccceEEcccceecceEEec
Q psy7042 1214 NTVGSDSASCKVYVVDKPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVF 1293 (2245)
Q Consensus 1214 n~~g~~~~s~~~~v~~~p~~p~~~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~ 1293 (2245)
...|....+........-+.++..+....-..+.-.|.|.+-....+.--.+|.+... ..+.|........ +...+.
T Consensus 514 ~~~~k~~~~~~~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~r~g-tt~t~~ 590 (1205)
T KOG0613|consen 514 TLQGKPVPSLDRKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPESRPG-TTETIG 590 (1205)
T ss_pred ccCCCCCCcccccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCcccccCCC-cccccc
Confidence 5444433332222211111111222223333445566676533222221223433322 2344433322222 778899
Q ss_pred CCCCCceEEEEEEEeccccCCCCcccCCcccccCCCCCCCCCCCCeeeeccCCcEEEEeeCCCC
Q psy7042 1294 GLETNRQYRFRVRAENQYGVSEPLELDNSITAKFPFTVPDPPGQPQIVDWDTNNATLMWDRPRT 1357 (2245)
Q Consensus 1294 ~L~~~t~Y~~~v~A~n~~G~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~~s~~l~W~~p~~ 1357 (2245)
+..++..|.+++.+.+..|.+.|+..+.++.-..+......+...........+..++|.....
T Consensus 591 ~~~p~~~~~~t~~~k~~~gE~~ps~~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~ 654 (1205)
T KOG0613|consen 591 SILPGHEYHVTIKAKNELGESRPSSKSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLS 654 (1205)
T ss_pred cccccccceeehhhhhcccccCCCCCCccccccccccccccccCCccccccccccchhcccchh
Confidence 9999999999999999999998875333332222222223333333344455566677766443
No 207
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.74 E-value=4.2e-08 Score=90.51 Aligned_cols=78 Identities=27% Similarity=0.549 Sum_probs=62.6
Q ss_pred ceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
|.|...+ ..+.+|+.++|.|.+.|.|.+.+.|++++..+..+. + .|.|..+..+|+|.|+|.|.|..|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~---~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------N---GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------S---EEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------e---eeeeeeeccccCEEEEEEEEeCCC
Confidence 6666555 568999999999999999999999999987776332 1 288899999999999999999665
Q ss_pred -eeeEEEEEEE
Q psy7042 2168 -VKSTKAELII 2177 (2245)
Q Consensus 2168 -~~~~~~~l~V 2177 (2245)
..+..+.|+|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 4466677765
No 208
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.73 E-value=5.5e-08 Score=92.29 Aligned_cols=82 Identities=20% Similarity=0.390 Sum_probs=61.4
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEECCeec--------cCCCeEEEEE-cCcEEEEEEeeeccCCCeEEEEEEEcC
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREI--------SSGARYRVET-AGGVFRLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
+++.+.+|++++|.|.+.+.|.+.+.|++.+..+ ....|+.+.. .+....|+|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 4578899999999999988888899998632211 1234666632 334567999999999999999999976
Q ss_pred cccceeEEEEEe
Q psy7042 169 VGFAHTSSRVKI 180 (2245)
Q Consensus 169 ~g~~~~~~~l~V 180 (2245)
.. ...++.|+|
T Consensus 85 ~~-~~~~~~~~v 95 (95)
T cd05717 85 PV-QTAKATVTV 95 (95)
T ss_pred CC-ceEEEEEEC
Confidence 53 466666665
No 209
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.72 E-value=2.6e-08 Score=90.77 Aligned_cols=77 Identities=22% Similarity=0.397 Sum_probs=62.2
Q ss_pred Cceec-CCcceEEeCCCeEEEEEE-EeeecCCceEEEECCee-ccCCCeEEEEEcCcEEEEEEeeeccCCCe-EEEEEEE
Q psy7042 91 PDFIV-PLKDLVVPLGKLLTLQCE-ATGTPVPKCRWLRNGRE-ISSGARYRVETAGGVFRLHFNEVTDVDNG-DYTCEAY 166 (2245)
Q Consensus 91 P~~~~-~~~~~~v~~G~~v~L~C~-~~g~p~~~i~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~ 166 (2245)
|.|.. ..+.+.|.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.+..+| .|.|.+++.+|+| .|.|.|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEE
Confidence 45554 356789999999999997 59999999999987654 4456677666555 3999999999999 7999999
Q ss_pred cCcc
Q psy7042 167 NSVG 170 (2245)
Q Consensus 167 n~~g 170 (2245)
|...
T Consensus 80 ~~~~ 83 (95)
T cd05845 80 FPGL 83 (95)
T ss_pred cccc
Confidence 8763
No 210
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.72 E-value=3.1e-08 Score=91.13 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=55.9
Q ss_pred eEEeCCCeEEEEEEEeeecCCceEEEECCeec-c-------------CCCeEEEEE---cCcEEEEEEeeeccCCCeEEE
Q psy7042 100 LVVPLGKLLTLQCEATGTPVPKCRWLRNGREI-S-------------SGARYRVET---AGGVFRLHFNEVTDVDNGDYT 162 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l-~-------------~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~ 162 (2245)
+.+.+|++|+|.|.+++.+.+.|.|+++++.. . ..+|+.+.. .++.+.|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45789999999999999999999999877332 1 122333333 455678999999999999999
Q ss_pred EEEEcCccc
Q psy7042 163 CEAYNSVGF 171 (2245)
Q Consensus 163 C~a~n~~g~ 171 (2245)
|.|.|..++
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999987654
No 211
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.70 E-value=6.6e-08 Score=88.69 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=58.9
Q ss_pred CccEEEEEEEEeeCCC--eEEEeeCCEeeCCC---C--c-EEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2102 NHNAQFQCTITGCPKP--TISWLKGSREITPS---A--R-HHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p--~i~W~~~g~~l~~~---~--~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
|++++|.|.+.|.|.+ .+.|...++.+... . + .........+.|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999987654 68998877643211 1 1 0001123356899999999999999999999999999999
Q ss_pred EEEEEc
Q psy7042 2174 ELIIMT 2179 (2245)
Q Consensus 2174 ~l~V~~ 2179 (2245)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 998863
No 212
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.70 E-value=8.1e-08 Score=91.13 Aligned_cols=82 Identities=13% Similarity=0.361 Sum_probs=61.3
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEee--------CCCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEEeC
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVNK 2165 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 2165 (2245)
+++.+.+|++|+|.|.+.+.|.+.+.|++.++.+ ....||.+.. .+....|+|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 4567899999999999999999999998632211 1234666642 234568999999999999999999986
Q ss_pred CceeeEEEEEEE
Q psy7042 2166 GGVKSTKAELII 2177 (2245)
Q Consensus 2166 ~G~~~~~~~l~V 2177 (2245)
.. .+.++.|+|
T Consensus 85 ~~-~~~~~~~~v 95 (95)
T cd05717 85 PV-QTAKATVTV 95 (95)
T ss_pred CC-ceEEEEEEC
Confidence 53 466666654
No 213
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.68 E-value=2e-07 Score=87.76 Aligned_cols=82 Identities=26% Similarity=0.554 Sum_probs=71.7
Q ss_pred ceeeecCccEEEEEEEEeeCCCeEEEeeC-CEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
...+.+|++++|.|.+.+.+.+.+.|+++ +..+....++.+........|.|.+++..|+|.|.|.+.|..|.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678999999999999888999999998 88887677777777765678999999999999999999999998877777
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 214
>smart00409 IG Immunoglobulin.
Probab=98.68 E-value=2e-07 Score=87.76 Aligned_cols=82 Identities=26% Similarity=0.554 Sum_probs=71.7
Q ss_pred ceeeecCccEEEEEEEEeeCCCeEEEeeC-CEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKPTISWLKG-SREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
...+.+|++++|.|.+.+.+.+.+.|+++ +..+....++.+........|.|.+++..|+|.|.|.+.|..|.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45678999999999999888999999998 88887677777777765678999999999999999999999998877777
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 766
No 215
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.67 E-value=7.6e-08 Score=88.79 Aligned_cols=79 Identities=37% Similarity=0.657 Sum_probs=61.0
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
+|.+..++ ..+.+|+.++|.|.+.+.|.+.+.|++++..+.... ++ |.|..++.+|+|.|+|.|.+..
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~---~~~~~~~~~~~g~y~C~~~~~~ 68 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NG---LFIPNVSPEDSGNYTCRASNGS 68 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SE---EEESSEEGGGTEEEEEEEEETT
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------ee---eeeeeeccccCEEEEEEEEeCC
Confidence 36666555 568999999999999999999999999998776321 11 7778999999999999999965
Q ss_pred c-cceeEEEEEe
Q psy7042 170 G-FAHTSSRVKI 180 (2245)
Q Consensus 170 g-~~~~~~~l~V 180 (2245)
+ ..+.+++|+|
T Consensus 69 ~~~~s~~~~v~V 80 (80)
T PF13895_consen 69 GSNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCeEeeeEEeeC
Confidence 4 4445666665
No 216
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.67 E-value=5.5e-08 Score=89.12 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=58.8
Q ss_pred eeeecCccEEEEEEE-Ee----eCCCeEEEeeCCEeeCCCC-cEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCcee-
Q psy7042 2097 ANAIQNHNAQFQCTI-TG----CPKPTISWLKGSREITPSA-RHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVK- 2169 (2245)
Q Consensus 2097 ~~~~~g~~v~l~C~~-~g----~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~- 2169 (2245)
+.+.+|.+..|.|.- .+ .+.|.|+||||+.+|.... ++....++. .|.|.+|..+|+|.|+|+|.|.+|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGST--YLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCC--EEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 346788999999972 33 4778999999999987554 333222333 69999999999999999999998765
Q ss_pred ---eEEEEEEE
Q psy7042 2170 ---STKAELII 2177 (2245)
Q Consensus 2170 ---~~~~~l~V 2177 (2245)
.+.+.|.|
T Consensus 83 y~vtr~~~l~v 93 (95)
T cd05897 83 YNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEEE
Confidence 33444544
No 217
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.67 E-value=7.2e-08 Score=84.07 Aligned_cols=63 Identities=33% Similarity=0.605 Sum_probs=52.1
Q ss_pred cCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2101 QNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
+|++++|.|.+.+.|.+.+.|++++..+.. ...... ....|.|.++...|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999999999999999999988872 222222 233899999999999999999999876
No 218
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.65 E-value=9.5e-08 Score=89.36 Aligned_cols=84 Identities=38% Similarity=0.615 Sum_probs=72.3
Q ss_pred CCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCc-eEEecceeeeceEEEecCCCCceeeEEEEEEecc
Q psy7042 903 HPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTV-WTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQY 981 (2245)
Q Consensus 903 ~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~ 981 (2245)
.+|.+|++...+.+++.|+|+++. .++..+.+|.|++....... +...........+.|.+|.|++.|.|+|+|.|..
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 378999999999999999999987 34459999999999877666 6666666667799999999999999999999999
Q ss_pred ccCCCc
Q psy7042 982 GLSKPA 987 (2245)
Q Consensus 982 g~~~~s 987 (2245)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 987653
No 219
>smart00409 IG Immunoglobulin.
Probab=98.65 E-value=3.2e-07 Score=86.31 Aligned_cols=83 Identities=33% Similarity=0.662 Sum_probs=71.4
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEEC-CeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRN-GREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
..+.+..|++++|.|.+.+.+.+.+.|+++ +..+....++.+...+....|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 8888767788877776667899999999999999999998888777777
Q ss_pred EEEe
Q psy7042 177 RVKI 180 (2245)
Q Consensus 177 ~l~V 180 (2245)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 220
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.65 E-value=3.2e-07 Score=86.31 Aligned_cols=83 Identities=33% Similarity=0.662 Sum_probs=71.4
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEEC-CeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRN-GREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
..+.+..|++++|.|.+.+.+.+.+.|+++ +..+....++.+...+....|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 8888767788877776667899999999999999999998888777777
Q ss_pred EEEe
Q psy7042 177 RVKI 180 (2245)
Q Consensus 177 ~l~V 180 (2245)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 221
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.65 E-value=1.1e-07 Score=87.96 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=58.6
Q ss_pred ceEEeCCCeEEEEEEEeeecCCceEEEECC--ee----ccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEE-cCccc
Q psy7042 99 DLVVPLGKLLTLQCEATGTPVPKCRWLRNG--RE----ISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY-NSVGF 171 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~~----l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~-n~~g~ 171 (2245)
.+.+.+|++++|.|.. +.|.|.|.|+|.+ .. +....++... ++ .|.|.+++.+|+|.|+|.|. |..+.
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--ER--GLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe--cC--eEEEeeCChhHCEEEEEEEEccCCeE
Confidence 3567899999999997 4788999999833 22 1123355432 22 39999999999999999998 56666
Q ss_pred ceeEEEEEecC
Q psy7042 172 AHTSSRVKIGT 182 (2245)
Q Consensus 172 ~~~~~~l~V~~ 182 (2245)
....++|+|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 66678888753
No 222
>PHA03376 BARF1; Provisional
Probab=98.65 E-value=2.1e-07 Score=91.59 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=82.9
Q ss_pred ceEEeCCCeEEEEEEEe---eecCCceEEEECC----eec-------------cCCCeEEEEEcCcEEEEEEeeeccCCC
Q psy7042 99 DLVVPLGKLLTLQCEAT---GTPVPKCRWLRNG----REI-------------SSGARYRVETAGGVFRLHFNEVTDVDN 158 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~---g~p~~~i~W~~~g----~~l-------------~~~~~~~~~~~~~~~~L~i~~~~~~d~ 158 (2245)
.+.+..|+.+.|+|... ..+..+|.|+|.+ ..+ ....++.+-.+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 35678899999999875 2244579999942 111 112345555566888999999999999
Q ss_pred eEEEEEEEcCcccceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCce
Q psy7042 159 GDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGR 222 (2245)
Q Consensus 159 G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~ 222 (2245)
|.|+|...........--.|++-.|-.+...........-+..++.|.+.|+|.|.++|.-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999976544433334444443333222211112225567899998899999999987544
No 223
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.59 E-value=3.9e-07 Score=83.75 Aligned_cols=70 Identities=20% Similarity=0.455 Sum_probs=56.8
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEECCeec--------cCCCeEEEEE-cCcEEEEEEeeeccCCCeEEEEEEEc
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREI--------SSGARYRVET-AGGVFRLHFNEVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n 167 (2245)
+++.+.+|++++|+|.+.+.....+.|++.+..+ ..++|+.... .+..++|.|++++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4578999999999999988766668887755332 2566888765 56778999999999999999999975
No 224
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.59 E-value=1.6e-07 Score=86.20 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=58.2
Q ss_pred CCeEEEEEEEeeecC--CceEEEECCeeccCC---C--e-EEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 105 GKLLTLQCEATGTPV--PKCRWLRNGREISSG---A--R-YRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~--~~i~W~~~g~~l~~~---~--~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
|++++|.|.+.+.|. ..+.|.+++..+... . + ..........+|.|.+++.+|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999987664 478998877643211 1 1 1111122345799999999999999999999999888888
Q ss_pred EEEecC
Q psy7042 177 RVKIGT 182 (2245)
Q Consensus 177 ~l~V~~ 182 (2245)
.|.|++
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 888853
No 225
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.58 E-value=2e-07 Score=81.80 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=52.9
Q ss_pred cEEEEEEEE-eeCCCeEEEeeCCEeeCCCCcEEEEEeC----cEEEEEEcCCCCCCCeEEEEEEEeCCcee---eEEEEE
Q psy7042 2104 NAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEG----DTYTLIINSVYGVDADEYVCRAVNKGGVK---STKAEL 2175 (2245)
Q Consensus 2104 ~v~l~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~---~~~~~l 2175 (2245)
.++|+|... |.|++.|+|||||++|..... . ..++ ....|.|.-....|.+.|+|+|.|.++.. +.+..|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l 78 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL 78 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence 378999985 789999999999999965321 1 1111 12369998888999999999999998764 444555
Q ss_pred E
Q psy7042 2176 I 2176 (2245)
Q Consensus 2176 ~ 2176 (2245)
.
T Consensus 79 ~ 79 (80)
T cd05885 79 D 79 (80)
T ss_pred e
Confidence 4
No 226
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.58 E-value=1.3e-07 Score=88.34 Aligned_cols=83 Identities=37% Similarity=0.656 Sum_probs=70.1
Q ss_pred CCCCceeeeccCCcEEEEecCCCCCCCcceeeeEEEEeeccccc-eEEcccceecceEEecCCCCCceEEEEEEEecccc
Q psy7042 1234 PQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGF-WSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYG 1312 (2245)
Q Consensus 1234 p~~~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G 1312 (2245)
||.++.+..++.+++.|+|++|. ..+..+.+|.|++....... +...........+.+.+|.|++.|.|+|+|.|..|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred cCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 44679999999999999999987 45666999999998876655 66666666677999999999999999999999999
Q ss_pred CCCCc
Q psy7042 1313 VSEPL 1317 (2245)
Q Consensus 1313 ~~~~s 1317 (2245)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 88753
No 227
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.56 E-value=2.4e-07 Score=82.68 Aligned_cols=73 Identities=27% Similarity=0.474 Sum_probs=60.0
Q ss_pred cceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEE
Q psy7042 98 KDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSS 176 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 176 (2245)
+.+.+..|+++.|+|...++ .+.+.|+++|..+..+.++.....| |.|..++.+|+|.|+|.+. +.|....-+
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence 45789999999999999865 5689999999999887777776666 7899999999999999998 335444433
No 228
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.55 E-value=2.4e-07 Score=80.70 Aligned_cols=63 Identities=40% Similarity=0.778 Sum_probs=51.4
Q ss_pred CCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 104 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
+|+.++|.|.+.+.|.+.+.|++++..+.. .......+ ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLSASG--STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEecCC--cEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999998889999999999998872 22222222 3699999999999999999998764
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.54 E-value=3e-07 Score=82.11 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=63.1
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
.+.++..|+++.|.|...+ +.+.+.|+++|..+..+.++....+| |.|..++.+|+|.|.|.|. ..|....-+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence 4567999999999999975 57899999999999887777777777 8899999999999999987 5566554444
Q ss_pred EEE
Q psy7042 2175 LII 2177 (2245)
Q Consensus 2175 l~V 2177 (2245)
+.+
T Consensus 78 y~l 80 (85)
T cd05872 78 YSL 80 (85)
T ss_pred EEE
Confidence 433
No 230
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.53 E-value=8.3e-07 Score=81.62 Aligned_cols=70 Identities=14% Similarity=0.338 Sum_probs=57.2
Q ss_pred cceeeecCccEEEEEEEEeeCCCeEEEeeCCEee--------CCCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEEe
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKPTISWLKGSREI--------TPSARHHIFA-EGDTYTLIINSVYGVDADEYVCRAVN 2164 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N 2164 (2245)
.++++.+|++|+|.|.+.+.....+.|++-+..+ ....||.+.. +++..+|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4678999999999999998777778888755332 3456888776 57778899999999999999999864
No 231
>KOG4802|consensus
Probab=98.53 E-value=1.6e-06 Score=95.72 Aligned_cols=190 Identities=21% Similarity=0.294 Sum_probs=130.6
Q ss_pred ecCCCCCccc-EEeeeeCceEEEEecCCCCCCCCccceEEEe------------eeecCCCceEEecceeeeceEEEecC
Q psy7042 899 LDRPHPPENL-HADEFAGDSLTLYWTPPRDNGGSEITNYVVE------------KKDYNSTVWTKVSSYVTTPFVRVRNL 965 (2245)
Q Consensus 899 ~~~P~~p~~l-~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~------------~~~~~~~~~~~~~~~~~~~~~~i~~L 965 (2245)
...+.+|.+. ........++.+.|.--.. +.-|.+. -+......|+.+........+...++
T Consensus 142 k~~~l~Pr~k~~y~r~~~g~~av~w~~~~~-----~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~ 216 (516)
T KOG4802|consen 142 KNTQLPPRPKILYFRRSRGSHAVDWKIESS-----LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDM 216 (516)
T ss_pred ccCCCCCcchhhhhhhccCceeeeeeeccc-----cceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeec
Confidence 3566667664 3445667788999986431 2222221 12234456888887777778999999
Q ss_pred CCCceeeEEEEEEeccccCCCccccCcccccCCCCCCCCCCCCeeEeecC---CeEEEEecCCCCCCCCccceEEEEEEe
Q psy7042 966 AIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTE---DSISLVWSKPRHDGGSPIQRYIVEKRL 1042 (2245)
Q Consensus 966 ~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~~p~~~~~~~~~~---~~v~l~W~~p~~~~~~~i~~y~v~~~~ 1042 (2245)
.||..|+|+|.|+|..|.-..+.++.++.....+.+|.+|.+++...+.. -...|.|.|+..+ .||..|.|.|..
T Consensus 217 rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws~ 294 (516)
T KOG4802|consen 217 RPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWSL 294 (516)
T ss_pred CcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEeeh
Confidence 99999999999999999888888888888888889999999998876443 3456888886644 689999999974
Q ss_pred cCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCCCCCCCCC
Q psy7042 1043 ISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAGQGPWSSS 1122 (2245)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G~~~~s~~ 1122 (2245)
.-....... .. +.+. .....++ .|.+|.|+..|.+.|+|....|.+.....
T Consensus 295 ~v~s~k~~m-----~t----------ks~~----~k~thq~----------si~~L~Pns~Y~VevqAi~y~g~~rLkse 345 (516)
T KOG4802|consen 295 YVNSAKASM-----IT----------KSSY----VKDTHQF----------SIKELLPNSSYYVEVQAISYLGSRRLKSE 345 (516)
T ss_pred hhhhhhhhc-----cc----------ccce----eeccchh----------hhhhcCCCCeEEEEEEEEEeccCcccccc
Confidence 321100000 00 0000 0011111 59999999999999999999998876654
Q ss_pred Cc
Q psy7042 1123 SD 1124 (2245)
Q Consensus 1123 ~~ 1124 (2245)
..
T Consensus 346 k~ 347 (516)
T KOG4802|consen 346 KW 347 (516)
T ss_pred eE
Confidence 44
No 232
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.52 E-value=2.8e-07 Score=80.02 Aligned_cols=61 Identities=33% Similarity=0.631 Sum_probs=49.3
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeeccCCCeEEEEEcCcEE--EEEEeeeccCCCeEEEEEE
Q psy7042 105 GKLLTLQCEA-TGTPVPKCRWLRNGREISSGARYRVETAGGVF--RLHFNEVTDVDNGDYTCEA 165 (2245)
Q Consensus 105 G~~v~L~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a 165 (2245)
|++++|.|.+ .+.+...+.|+|++..+...........+... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8999999999 66778899999999988765554444444321 3999999999999999987
No 233
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.49 E-value=3.1e-07 Score=80.60 Aligned_cols=64 Identities=8% Similarity=-0.012 Sum_probs=48.9
Q ss_pred eEEEEEEEe-cCCCceEEEeeCceeeecCCceEEEEe---CCeEEEEEcccCccCceeEEEEEEcCCcc
Q psy7042 200 NTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVL---DDYIIIFIKEIRKEDAGDYTVNLSNSSGS 264 (2245)
Q Consensus 200 ~~~l~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 264 (2245)
.+.|+|... |+|++.|+|||||++|..... ..... ...++|.|.....+|.+.|+|+|.|.++.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 378999975 699999999999999964321 10000 12347999999999999999999999864
No 234
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.49 E-value=3.4e-07 Score=83.97 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=58.5
Q ss_pred ceEEcCCCeEEEEEE-Ee----cCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcce-
Q psy7042 192 ALYIPEGDNTKVKIF-YA----GDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV- 265 (2245)
Q Consensus 192 ~~~v~~G~~~~l~C~-~~----g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~- 265 (2245)
...+.+|....|.|. .. ..+.++++||||+.++....... ....+...|.|.++..+|+|.|+|+|.|..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-EecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 346778999999997 23 34678999999999987544321 221223469999999999999999999987543
Q ss_pred ---EEEEEEEE
Q psy7042 266 ---SGTFTINI 273 (2245)
Q Consensus 266 ---~~~~~l~V 273 (2245)
+.+..|.|
T Consensus 83 y~vtr~~~l~v 93 (95)
T cd05897 83 YNITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEEE
Confidence 44555544
No 235
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.48 E-value=2.6e-07 Score=80.22 Aligned_cols=61 Identities=20% Similarity=0.463 Sum_probs=49.0
Q ss_pred CccEEEEEEE-EeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEE--EEEEcCCCCCCCeEEEEEE
Q psy7042 2102 NHNAQFQCTI-TGCPKPTISWLKGSREITPSARHHIFAEGDTY--TLIINSVYGVDADEYVCRA 2162 (2245)
Q Consensus 2102 g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a 2162 (2245)
|++|+|.|.+ .+.|.+.+.|+|++..+...........+... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 78888999999999877655544444444322 3999999999999999986
No 236
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.46 E-value=1.5e-06 Score=79.13 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=67.2
Q ss_pred ceEEeCCCeEEEEEEEeeecCCc-eEEEECCeeccCCCeEEEEEcC-----cEEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 99 DLVVPLGKLLTLQCEATGTPVPK-CRWLRNGREISSGARYRVETAG-----GVFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
.+.|.+|+.+.|.|.+.+.|+|+ +.|.+++..+.....-.+.... -...|.+..++.+|+|.|+|.|.|....+
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 46799999999999999999998 9999998876543321122211 13579999999999999999999999999
Q ss_pred eeEEEEEec
Q psy7042 173 HTSSRVKIG 181 (2245)
Q Consensus 173 ~~~~~l~V~ 181 (2245)
+.++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888888875
No 237
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.41 E-value=1.1e-06 Score=80.53 Aligned_cols=73 Identities=21% Similarity=0.365 Sum_probs=52.4
Q ss_pred cEEEEEEEEe-eCCCeEEEeeCCEeeCCCCcE-EEEEeCc----EEEEEEcCCCCCCCeEEEEEEEeCCcee--eEEEEE
Q psy7042 2104 NAQFQCTITG-CPKPTISWLKGSREITPSARH-HIFAEGD----TYTLIINSVYGVDADEYVCRAVNKGGVK--STKAEL 2175 (2245)
Q Consensus 2104 ~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l 2175 (2245)
.+.|.|.+.| .|.|.|+|+|+|+++...... ....++. .+.|.|......|.|.|+|.|.|..... ..++.|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 699999999999988654311 1122332 2468888777888999999999987544 445555
Q ss_pred E
Q psy7042 2176 I 2176 (2245)
Q Consensus 2176 ~ 2176 (2245)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
No 238
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.41 E-value=1.3e-06 Score=79.75 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=60.1
Q ss_pred ceEEeCCCeEEEEEEEe-----------eecCCceEEEECCeeccCCCe-----EEEEEcCcEEEEEEeeeccCCCeEEE
Q psy7042 99 DLVVPLGKLLTLQCEAT-----------GTPVPKCRWLRNGREISSGAR-----YRVETAGGVFRLHFNEVTDVDNGDYT 162 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~-----------g~p~~~i~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~ 162 (2245)
...+.+|+.+.|.|..- ..+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 35688999999999861 122347999999755554321 23444454 4999999999999999
Q ss_pred EEEEcCcccceeEEEEEe
Q psy7042 163 CEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 163 C~a~n~~g~~~~~~~l~V 180 (2245)
|++.|.......+++|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999999988888887775
No 239
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.41 E-value=1.1e-06 Score=80.36 Aligned_cols=79 Identities=14% Similarity=0.229 Sum_probs=60.6
Q ss_pred eeeecCccEEEEEEEE------e-----eCCCeEEEeeCCEeeCCCCc-----EEEEEeCcEEEEEEcCCCCCCCeEEEE
Q psy7042 2097 ANAIQNHNAQFQCTIT------G-----CPKPTISWLKGSREITPSAR-----HHIFAEGDTYTLIINSVYGVDADEYVC 2160 (2245)
Q Consensus 2097 ~~~~~g~~v~l~C~~~------g-----~P~p~i~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C 2160 (2245)
..+.+|+.|.|.|... + .+...+.|+|++..+..... -++...+. .|.|..+..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence 4578999999999961 1 23457999999765554331 24555555 79999999999999999
Q ss_pred EEEeCCceeeEEEEEEE
Q psy7042 2161 RAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2161 ~a~N~~G~~~~~~~l~V 2177 (2245)
.+.|...-...++.|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99999888877777765
No 240
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.40 E-value=6.1e-07 Score=83.74 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=58.3
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeC
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 2165 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 2165 (2245)
.|.|...+. ..+..|++|+|+|... .|...+.|+|+|..+.... ....+....|.|..|+.+|+|.|+|++.|.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 477777664 3688999999999886 7888999999997544211 122345568999999999999999999987
No 241
>PHA03376 BARF1; Provisional
Probab=98.40 E-value=2.6e-06 Score=84.17 Aligned_cols=123 Identities=13% Similarity=0.143 Sum_probs=78.7
Q ss_pred ceEEcCCCeEEEEEEec---CcCCCeEEEeeCCE----ec-------------cCCceEEEEecCcEEEEEEeeeccCCC
Q psy7042 1706 DLVVPLGKLLTLQCEAT---GTPVPKCRWLRNGR----EI-------------SSGARYRVETAGGVFRLHFNEVTDVDN 1765 (2245)
Q Consensus 1706 ~~~~~~G~~v~L~C~~~---~~p~~~v~W~~~~~----~l-------------~~~~~~~~~~~~~~~~L~i~~v~~~d~ 1765 (2245)
.+.+..|+.+.|+|... ..+...|.|+|.+. -+ ....++.+..+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 35678999999999875 23456799999532 11 111344455567899999999999999
Q ss_pred eEEEEEEecCceeeEEEEEEEecCCCccccCCCceEEcCCCeEEEEEEEeccCCcEEEEEECC
Q psy7042 1766 GDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNG 1828 (2245)
Q Consensus 1766 G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~g 1828 (2245)
|.|+|...-........-.|.+-.|-.+...........-+...+.|.+.|.|.|.++|.-+.
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 999999976543333322333222211111010001112456789999888999999998654
No 242
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.29 E-value=1.4e-06 Score=81.27 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=57.4
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcC
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
+|.+...|+ ..|.+|++|+|.|... .+...+.|+|+|...... + ....+....|.|.+++.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 577777775 4788999999999986 667789999999865421 1 112234456999999999999999999986
No 243
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.27 E-value=2.8e-06 Score=83.52 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=59.0
Q ss_pred ecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCe---ec-----------cCCCeEEEEEc--CcEEEEEEeeeccCC
Q psy7042 94 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGR---EI-----------SSGARYRVETA--GGVFRLHFNEVTDVD 157 (2245)
Q Consensus 94 ~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~i~~~~~~d 157 (2245)
..+|..+.+.+|++|+|.|.+.+.+...+.|+|... +. ...+|+.+... .+.+.|.|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 346677899999999999999877778899998431 10 12346666543 467899999999999
Q ss_pred CeEEEEEEEcCc
Q psy7042 158 NGDYTCEAYNSV 169 (2245)
Q Consensus 158 ~G~Y~C~a~n~~ 169 (2245)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999999754
No 244
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.25 E-value=1.4e-06 Score=79.15 Aligned_cols=74 Identities=30% Similarity=0.447 Sum_probs=50.6
Q ss_pred CceEEeeccceeeecCccEEEEEEEEeeC-CCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEe
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGCP-KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVN 2164 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 2164 (2245)
+|.+...+.......+. ++|.|.+.+.| .+.|+|+ +........ ..........|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~--~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSN--SRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEE--EEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeee--eeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 36666666654444444 99999999887 8889999 111111111 112223344899999999999999999998
No 245
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.24 E-value=5.7e-06 Score=75.85 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=51.3
Q ss_pred eEEEEEEEee-ecCCceEEEECCeeccCCCeEE-EEEcCc----EEEEEEeeeccCCCeEEEEEEEcCcccc--eeEEEE
Q psy7042 107 LLTLQCEATG-TPVPKCRWLRNGREISSGARYR-VETAGG----VFRLHFNEVTDVDNGDYTCEAYNSVGFA--HTSSRV 178 (2245)
Q Consensus 107 ~v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l 178 (2245)
.+.|+|.+.| .|.+.|.|+|+|+.+....... ...+++ ...|.|.....+|.|.|+|.|.|..... ..+.+|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 6889999999999886432211 122232 2368888888889999999999876433 334444
Q ss_pred E
Q psy7042 179 K 179 (2245)
Q Consensus 179 ~ 179 (2245)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
No 246
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.24 E-value=4.4e-06 Score=79.02 Aligned_cols=78 Identities=22% Similarity=0.384 Sum_probs=56.9
Q ss_pred cceeeecCccEEEEEEEEeeCCC--eEEEeeCCE-----ee----C----------CCCcEEEEEeCcEEEEEEcCCCCC
Q psy7042 2095 RNANAIQNHNAQFQCTITGCPKP--TISWLKGSR-----EI----T----------PSARHHIFAEGDTYTLIINSVYGV 2153 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~P~p--~i~W~~~g~-----~l----~----------~~~~~~~~~~~~~~~L~i~~v~~~ 2153 (2245)
.+..+.+|++|.|.|.. .|.. .|.|||+.. .+ . ..+|..+..+| +|.|.+++.+
T Consensus 6 ~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~ 80 (105)
T cd05774 6 VPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQK 80 (105)
T ss_pred cCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcc
Confidence 34468899999999975 4555 799999521 11 0 12455566666 7999999999
Q ss_pred CCeEEEEEEEeCC-ceeeEEEEEEE
Q psy7042 2154 DADEYVCRAVNKG-GVKSTKAELII 2177 (2245)
Q Consensus 2154 d~G~Y~C~a~N~~-G~~~~~~~l~V 2177 (2245)
|+|.|.|.+.|.. ...+..+.|.|
T Consensus 81 D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 81 DTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred cCEEEEEEEEeCCccEEEEEEEEEC
Confidence 9999999999977 45566666653
No 247
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.21 E-value=4.8e-06 Score=81.91 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=57.8
Q ss_pred eccceeeecCccEEEEEEEEeeCCCeEEEeeCCE---ee-----------CCCCcEEEEEe--CcEEEEEEcCCCCCCCe
Q psy7042 2093 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR---EI-----------TPSARHHIFAE--GDTYTLIINSVYGVDAD 2156 (2245)
Q Consensus 2093 ~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G 2156 (2245)
.+..+.+.+|++|+|.|.+.+.+.+.+.|||... +. ...+|+.+..+ ...+.|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 3455679999999999999987888999998431 10 12346666543 36789999999999999
Q ss_pred EEEEEEEeCCc
Q psy7042 2157 EYVCRAVNKGG 2167 (2245)
Q Consensus 2157 ~Y~C~a~N~~G 2167 (2245)
.|.|.+.+..|
T Consensus 84 ~Y~C~~~~~~~ 94 (109)
T cd04983 84 VYFCALSESGG 94 (109)
T ss_pred EEEEEEecCCC
Confidence 99999997643
No 248
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.16 E-value=5.4e-06 Score=81.24 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=56.3
Q ss_pred cCCcceEEeCCCeEEEEEEEeeecCCceEEEECC--eecc----------------CCCeEEEEEcC-cEEEEEEeeecc
Q psy7042 95 VPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNG--REIS----------------SGARYRVETAG-GVFRLHFNEVTD 155 (2245)
Q Consensus 95 ~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~~l~----------------~~~~~~~~~~~-~~~~L~i~~~~~ 155 (2245)
..|..+.+.+|++|+|.|.+.+ +...+.|+|.. ..+. ...|+.....+ ..++|+|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 4667789999999999999987 66789999943 2111 12355554433 567899999999
Q ss_pred CCCeEEEEEEEcCc
Q psy7042 156 VDNGDYTCEAYNSV 169 (2245)
Q Consensus 156 ~d~G~Y~C~a~n~~ 169 (2245)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998753
No 249
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.16 E-value=2.9e-06 Score=77.02 Aligned_cols=74 Identities=34% Similarity=0.552 Sum_probs=51.7
Q ss_pred CCceecCCcceEEeCCCeEEEEEEEeeec-CCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEc
Q psy7042 90 KPDFIVPLKDLVVPLGKLLTLQCEATGTP-VPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 90 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 167 (2245)
+|.|...+.......+. ++|+|.+.+.| .+.+.|+ +...... ............|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 47777777766665555 99999998877 8899999 1111111 11112223344799999999999999999987
No 250
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.16 E-value=1.1e-05 Score=77.60 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=53.0
Q ss_pred CccEEEEEEEEeeCC---CeEEEeeCC-----------EeeC------CCCcEEEEE---eCcEEEEEEcCCCCCCCeEE
Q psy7042 2102 NHNAQFQCTITGCPK---PTISWLKGS-----------REIT------PSARHHIFA---EGDTYTLIINSVYGVDADEY 2158 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~---p~i~W~~~g-----------~~l~------~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y 2158 (2245)
|++|+|.|...+... ..|.|+|.. .... -..|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 788999999863222 248888744 1111 012444422 23456899999999999999
Q ss_pred EEEEEeCCceeeEEEEEEE
Q psy7042 2159 VCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2159 ~C~a~N~~G~~~~~~~l~V 2177 (2245)
+|.+.|..|..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888777788876
No 251
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.15 E-value=6.5e-06 Score=77.90 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=56.1
Q ss_pred CCcceEEeCCCeEEEEEEEeeecCCceEEEECCe-----ecc--------------CCCeEEEEEcCcEEEEEEeeeccC
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGR-----EIS--------------SGARYRVETAGGVFRLHFNEVTDV 156 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~-----~l~--------------~~~~~~~~~~~~~~~L~i~~~~~~ 156 (2245)
.+....+.+|++|.|.|.....+...+.|+|... .|. ..+|..+..++ +|.|++++.+
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~ 80 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQK 80 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcc
Confidence 3334567899999999976433344899999532 110 12355555544 5999999999
Q ss_pred CCeEEEEEEEcCcc-cceeEEEEEe
Q psy7042 157 DNGDYTCEAYNSVG-FAHTSSRVKI 180 (2245)
Q Consensus 157 d~G~Y~C~a~n~~g-~~~~~~~l~V 180 (2245)
|+|.|+|.+.+... .....+.|.|
T Consensus 81 D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 81 DTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred cCEEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999998773 4444555543
No 252
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.13 E-value=7.9e-06 Score=79.42 Aligned_cols=76 Identities=21% Similarity=0.410 Sum_probs=57.2
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeec-CCceEEEECC--ee---cc---------CCCeEEEEEcCcEEEEEEeeeccCC
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTP-VPKCRWLRNG--RE---IS---------SGARYRVETAGGVFRLHFNEVTDVD 157 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g--~~---l~---------~~~~~~~~~~~~~~~L~i~~~~~~d 157 (2245)
+...|..+.+.+|++|+|.|.+.+.. ...+.|+|.. .. |. ...|+.....+..+.|+|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 34567778899999999999997655 5679999842 21 11 1235666555667789999999999
Q ss_pred CeEEEEEEEcC
Q psy7042 158 NGDYTCEAYNS 168 (2245)
Q Consensus 158 ~G~Y~C~a~n~ 168 (2245)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998754
No 253
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.12 E-value=7.7e-06 Score=80.17 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=54.8
Q ss_pred eccceeeecCccEEEEEEEEeeCCCeEEEeeCCE--eeC----------------CCCcEEEEEeC-cEEEEEEcCCCCC
Q psy7042 2093 PLRNANAIQNHNAQFQCTITGCPKPTISWLKGSR--EIT----------------PSARHHIFAEG-DTYTLIINSVYGV 2153 (2245)
Q Consensus 2093 ~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~--~l~----------------~~~~~~~~~~~-~~~~L~i~~v~~~ 2153 (2245)
.|....+.+|++|+|.|.+.+ +.+.+.|||... .+. ...++.+..+. ....|.|.+++.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 344567899999999999988 778899998431 110 12455554443 5678999999999
Q ss_pred CCeEEEEEEEeCC
Q psy7042 2154 DADEYVCRAVNKG 2166 (2245)
Q Consensus 2154 d~G~Y~C~a~N~~ 2166 (2245)
|+|.|.|.+.+..
T Consensus 83 Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 83 DSAVYLCASSLGG 95 (110)
T ss_pred hCEEEEEEeeCCC
Confidence 9999999998754
No 254
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.11 E-value=1.4e-05 Score=77.89 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=57.9
Q ss_pred cCccEEEEEEEEeeC------CCeEEEeeCCE----e---e-CC----------CCcEEEEEe-CcEEEEEEcCCCCCCC
Q psy7042 2101 QNHNAQFQCTITGCP------KPTISWLKGSR----E---I-TP----------SARHHIFAE-GDTYTLIINSVYGVDA 2155 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P------~p~i~W~~~g~----~---l-~~----------~~~~~~~~~-~~~~~L~i~~v~~~d~ 2155 (2245)
.|++|+|.|.....| ...|.|+|... . + .. ..|+.+... .+.++|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 35699998531 0 1 10 124444322 3356899999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2156 DEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2156 G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
|.|.|.+.|..|.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999999998888999885
No 255
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.10 E-value=1.8e-05 Score=69.86 Aligned_cols=75 Identities=5% Similarity=0.040 Sum_probs=52.9
Q ss_pred eEEEEEEEe-cCCCceEEEeeCceeeecCCceEEEEe---CCeEEEEEcccCccCceeEEEEEEcCCc-ceEEEEEEEEe
Q psy7042 200 NTKVKIFYA-GDQPMEVSLTKNGRVVQSDDRFKFTVL---DDYIIIFIKEIRKEDAGDYTVNLSNSSG-SVSGTFTINIT 274 (2245)
Q Consensus 200 ~~~l~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~V~ 274 (2245)
.+.|.|.+. +.|++.|+|||+|+++........... ...++|.|..-..+|...|+|+|.|..- ....+..|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 368999986 489999999999999965432111111 1335788877777777799999999762 25566667665
No 256
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.08 E-value=2.2e-05 Score=76.45 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=57.5
Q ss_pred cCccEEEEEEEEeeC------CCeEEEeeCC-----E-ee--CCCCc------E--EEE---EeCcEEEEEEcCCCCCCC
Q psy7042 2101 QNHNAQFQCTITGCP------KPTISWLKGS-----R-EI--TPSAR------H--HIF---AEGDTYTLIINSVYGVDA 2155 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P------~p~i~W~~~g-----~-~l--~~~~~------~--~~~---~~~~~~~L~i~~v~~~d~ 2155 (2245)
.|++|+|.|...+.| .+.|.|+|.. . .+ ..+.. + ++. ...+.++|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999997654 4679999962 1 11 01111 1 111 123457899999999999
Q ss_pred eEEEEEEEeCCceeeEEEEEEEEc
Q psy7042 2156 DEYVCRAVNKGGVKSTKAELIIMT 2179 (2245)
Q Consensus 2156 G~Y~C~a~N~~G~~~~~~~l~V~~ 2179 (2245)
|.|.|.+.|..+..+..+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988888889998853
No 257
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.08 E-value=1.8e-05 Score=76.00 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=56.6
Q ss_pred cCccEEEEEEEEeeC------------CCeEEEeeC--CE---eeC-----------CCCcEEEEE---eCcEEEEEEcC
Q psy7042 2101 QNHNAQFQCTITGCP------------KPTISWLKG--SR---EIT-----------PSARHHIFA---EGDTYTLIINS 2149 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P------------~p~i~W~~~--g~---~l~-----------~~~~~~~~~---~~~~~~L~i~~ 2149 (2245)
.|++|+|.|.....+ .+.|.|+|. |+ .+. -.+|+++.. ....+.|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999987432 468999983 21 110 112555543 33457899999
Q ss_pred CCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2150 VYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2150 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
++.+|+|+|.|.+.+.....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777777777775
No 258
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.06 E-value=1.8e-05 Score=76.03 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred CCCeEEEEEEEeeec------------CCceEEEEC--Cee---cc-----------CCCeEEEEE---cCcEEEEEEee
Q psy7042 104 LGKLLTLQCEATGTP------------VPKCRWLRN--GRE---IS-----------SGARYRVET---AGGVFRLHFNE 152 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p------------~~~i~W~~~--g~~---l~-----------~~~~~~~~~---~~~~~~L~i~~ 152 (2245)
.|++|+|.|...... .+.|.|+|. |.. +. -.+|+.+.. ..+...|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986432 358999983 211 10 012555543 33567899999
Q ss_pred eccCCCeEEEEEEEcCcccceeEEEEEec
Q psy7042 153 VTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 153 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
++.+|+|.|+|.+.+.....+....|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666677664
No 259
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.06 E-value=1.2e-05 Score=78.47 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=54.6
Q ss_pred eeecCccEEEEEEEEee-CCCeEEEeeCCE-----ee------------CCCCcEEEEEeC--cEEEEEEcCCCCCCCeE
Q psy7042 2098 NAIQNHNAQFQCTITGC-PKPTISWLKGSR-----EI------------TPSARHHIFAEG--DTYTLIINSVYGVDADE 2157 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~-P~p~i~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~ 2157 (2245)
.+.+|++|+|.|.+.+. +...+.|+|... .+ ....|+.+..+. +..+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57799999999999876 777899998432 11 123456665554 57899999999999999
Q ss_pred EEEEEEeCCc
Q psy7042 2158 YVCRAVNKGG 2167 (2245)
Q Consensus 2158 Y~C~a~N~~G 2167 (2245)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998776
No 260
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.05 E-value=1.9e-05 Score=75.90 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=53.4
Q ss_pred CCeEEEEEEEeeec---CCceEEEECCe--ec---------c------CCCeEEEEE---cCcEEEEEEeeeccCCCeEE
Q psy7042 105 GKLLTLQCEATGTP---VPKCRWLRNGR--EI---------S------SGARYRVET---AGGVFRLHFNEVTDVDNGDY 161 (2245)
Q Consensus 105 G~~v~L~C~~~g~p---~~~i~W~~~g~--~l---------~------~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y 161 (2245)
|++|+|.|...+.. ...|.|+|... .+ . -.+|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999986322 12588887441 11 1 012444432 23556899999999999999
Q ss_pred EEEEEcCcccceeEEEEEe
Q psy7042 162 TCEAYNSVGFAHTSSRVKI 180 (2245)
Q Consensus 162 ~C~a~n~~g~~~~~~~l~V 180 (2245)
+|.+.|..+..+..+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777776
No 261
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.04 E-value=3e-05 Score=75.18 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=56.7
Q ss_pred CcceEEeCCCeEEEEEEEeee----cCCceEEEE---------------CCeecc-CC----CeEEEEE--cCcEEEEEE
Q psy7042 97 LKDLVVPLGKLLTLQCEATGT----PVPKCRWLR---------------NGREIS-SG----ARYRVET--AGGVFRLHF 150 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~----p~~~i~W~~---------------~g~~l~-~~----~~~~~~~--~~~~~~L~i 150 (2245)
+.++.+..|+.++|.|..+.. +..+|.|.+ +|.... .. +|+.+.. ..+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 456788999999999999653 335799932 344332 11 2444432 234568999
Q ss_pred eeeccCCCeEEEEEEEcCcccce--eEEEEE
Q psy7042 151 NEVTDVDNGDYTCEAYNSVGFAH--TSSRVK 179 (2245)
Q Consensus 151 ~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~ 179 (2245)
.+++.+|+|.|+|.+.|..+... ..+.|.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 99999999999999998765333 344444
No 262
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.04 E-value=1.8e-05 Score=77.14 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=56.8
Q ss_pred CCCeEEEEEEEeeec------CCceEEEECCe----e----cc----------CCCeEEEEEc-CcEEEEEEeeeccCCC
Q psy7042 104 LGKLLTLQCEATGTP------VPKCRWLRNGR----E----IS----------SGARYRVETA-GGVFRLHFNEVTDVDN 158 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p------~~~i~W~~~g~----~----l~----------~~~~~~~~~~-~~~~~L~i~~~~~~d~ 158 (2245)
.|++|+|.|.....| ...|.|+|... . +. -..|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34699999531 0 11 0124444321 3356799999999999
Q ss_pred eEEEEEEEcCcccceeEEEEEec
Q psy7042 159 GDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 159 G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
|.|+|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988888888888875
No 263
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.03 E-value=2.2e-05 Score=76.35 Aligned_cols=79 Identities=22% Similarity=0.427 Sum_probs=56.6
Q ss_pred CCCeEEEEEEEeeec------CCceEEEECC-----e-ecc--CCC----------eEEEE-EcCcEEEEEEeeeccCCC
Q psy7042 104 LGKLLTLQCEATGTP------VPKCRWLRNG-----R-EIS--SGA----------RYRVE-TAGGVFRLHFNEVTDVDN 158 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p------~~~i~W~~~g-----~-~l~--~~~----------~~~~~-~~~~~~~L~i~~~~~~d~ 158 (2245)
.|++|+|.|.....+ ...|.|+|.. . .+. .+. |..+. ...+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4589999862 1 110 111 11111 123567899999999999
Q ss_pred eEEEEEEEcCcccceeEEEEEecC
Q psy7042 159 GDYTCEAYNSVGFAHTSSRVKIGT 182 (2245)
Q Consensus 159 G~Y~C~a~n~~g~~~~~~~l~V~~ 182 (2245)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877778888888754
No 264
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.02 E-value=1.9e-05 Score=78.46 Aligned_cols=73 Identities=16% Similarity=0.422 Sum_probs=56.8
Q ss_pred cCCcceEEeCCCeEEEEEEEee--ecCCceEEEEC--Ceecc-----------------CCCeEEEEEcC--cEEEEEEe
Q psy7042 95 VPLKDLVVPLGKLLTLQCEATG--TPVPKCRWLRN--GREIS-----------------SGARYRVETAG--GVFRLHFN 151 (2245)
Q Consensus 95 ~~~~~~~v~~G~~v~L~C~~~g--~p~~~i~W~~~--g~~l~-----------------~~~~~~~~~~~--~~~~L~i~ 151 (2245)
..|..+.+.+|++|+|.|.+.+ .+.+.+.|+|. |.... ...|+.+..+. ..+.|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 4566788999999999999977 67778999994 32110 13467766555 57889999
Q ss_pred eeccCCCeEEEEEEEc
Q psy7042 152 EVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 152 ~~~~~d~G~Y~C~a~n 167 (2245)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999874
No 265
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=1.7e-05 Score=77.11 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=54.5
Q ss_pred eccceeeecCccEEEEEEEEeeC-CCeEEEeeCC--E---eeC---------CCCcEEEEEeCcEEEEEEcCCCCCCCeE
Q psy7042 2093 PLRNANAIQNHNAQFQCTITGCP-KPTISWLKGS--R---EIT---------PSARHHIFAEGDTYTLIINSVYGVDADE 2157 (2245)
Q Consensus 2093 ~~~~~~~~~g~~v~l~C~~~g~P-~p~i~W~~~g--~---~l~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 2157 (2245)
.|....+.+|++|+|.|.+.+.. ...+.|||.. + .|. ...++.+...+....|.|.+++.+|+|.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~ 85 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV 85 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence 34456789999999999998765 6779999732 1 111 1235666556667789999999999999
Q ss_pred EEEEEEeC
Q psy7042 2158 YVCRAVNK 2165 (2245)
Q Consensus 2158 Y~C~a~N~ 2165 (2245)
|.|.+.|.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998653
No 266
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.01 E-value=2.9e-05 Score=76.11 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=55.0
Q ss_pred CcceEEeCCCeEEEEEEEeeec----CCceEEEEC----Cee--cc---------CC----CeEEEE--EcCcEEEEEEe
Q psy7042 97 LKDLVVPLGKLLTLQCEATGTP----VPKCRWLRN----GRE--IS---------SG----ARYRVE--TAGGVFRLHFN 151 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~----g~~--l~---------~~----~~~~~~--~~~~~~~L~i~ 151 (2245)
++.+.+.+|++++|.|.....+ ...|.|++. +.. +- .. +|+.+. ...+..+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 5668899999999999986433 235999751 211 10 11 122222 12345679999
Q ss_pred eeccCCCeEEEEEEEcCcccc--eeEEEEEe
Q psy7042 152 EVTDVDNGDYTCEAYNSVGFA--HTSSRVKI 180 (2245)
Q Consensus 152 ~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V 180 (2245)
+++.+|+|.|.|.+.|..+.. ...+.|+|
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999999876642 23444443
No 267
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.99 E-value=4.9e-05 Score=73.67 Aligned_cols=79 Identities=10% Similarity=0.257 Sum_probs=55.1
Q ss_pred cceeeecCccEEEEEEEEee----CCCeEEE---------------eeCCEeeC-CC----CcEEEEEe--CcEEEEEEc
Q psy7042 2095 RNANAIQNHNAQFQCTITGC----PKPTISW---------------LKGSREIT-PS----ARHHIFAE--GDTYTLIIN 2148 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g~----P~p~i~W---------------~~~g~~l~-~~----~~~~~~~~--~~~~~L~i~ 2148 (2245)
.++.+..|+.|+|.|..... +...|.| |++|+... +. +|..+..+ .+..+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 45678999999999999753 3457999 33454433 11 24444322 244689999
Q ss_pred CCCCCCCeEEEEEEEeCCceeeEEE
Q psy7042 2149 SVYGVDADEYVCRAVNKGGVKSTKA 2173 (2245)
Q Consensus 2149 ~v~~~d~G~Y~C~a~N~~G~~~~~~ 2173 (2245)
+++.+|.|.|+|.+.|.-+......
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~~~~ 110 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVGKSS 110 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCCcee
Confidence 9999999999999999776543333
No 268
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.99 E-value=1.9e-05 Score=78.48 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=54.8
Q ss_pred cceeeecCccEEEEEEEEe--eCCCeEEEeeC--CEee-----------------CCCCcEEEEEeC--cEEEEEEcCCC
Q psy7042 2095 RNANAIQNHNAQFQCTITG--CPKPTISWLKG--SREI-----------------TPSARHHIFAEG--DTYTLIINSVY 2151 (2245)
Q Consensus 2095 ~~~~~~~g~~v~l~C~~~g--~P~p~i~W~~~--g~~l-----------------~~~~~~~~~~~~--~~~~L~i~~v~ 2151 (2245)
..+.+.+|++|+|.|.+.+ .+.+.+.|||. |..+ ....|+.+..++ ....|+|.+++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 3456889999999999987 68889999984 2111 013577777666 67899999999
Q ss_pred CCCCeEEEEEEEe
Q psy7042 2152 GVDADEYVCRAVN 2164 (2245)
Q Consensus 2152 ~~d~G~Y~C~a~N 2164 (2245)
.+|+|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999998864
No 269
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.97 E-value=2e-05 Score=77.00 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=53.4
Q ss_pred EEeCCCeEEEEEEEeee-cCCceEEEECCe-----ec------------cCCCeEEEEEcC--cEEEEEEeeeccCCCeE
Q psy7042 101 VVPLGKLLTLQCEATGT-PVPKCRWLRNGR-----EI------------SSGARYRVETAG--GVFRLHFNEVTDVDNGD 160 (2245)
Q Consensus 101 ~v~~G~~v~L~C~~~g~-p~~~i~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~ 160 (2245)
.+.+|++++|.|.+.+. +...+.|+|... .+ ...+|+.+.... +.++|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999875 667899998432 11 112356655444 67889999999999999
Q ss_pred EEEEEEcCcc
Q psy7042 161 YTCEAYNSVG 170 (2245)
Q Consensus 161 Y~C~a~n~~g 170 (2245)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999997664
No 270
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.96 E-value=4e-05 Score=73.56 Aligned_cols=75 Identities=17% Similarity=0.396 Sum_probs=52.9
Q ss_pred ccEEEEEEEEeeC---CCeEEEeeCCEe----e-----------CC--CCcEEEEEeC-cEEEEEEcCCCCCCCeEEEEE
Q psy7042 2103 HNAQFQCTITGCP---KPTISWLKGSRE----I-----------TP--SARHHIFAEG-DTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2103 ~~v~l~C~~~g~P---~p~i~W~~~g~~----l-----------~~--~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
++|+|.|...+.+ ...|.|+|.... + .. ..|..+..+. +...|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997654 446999995421 0 11 1122222211 356899999999999999999
Q ss_pred EEe-CCceeeEEEEEEE
Q psy7042 2162 AVN-KGGVKSTKAELII 2177 (2245)
Q Consensus 2162 a~N-~~G~~~~~~~l~V 2177 (2245)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6788888888877
No 271
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.96 E-value=2.3e-05 Score=74.17 Aligned_cols=72 Identities=21% Similarity=0.341 Sum_probs=52.3
Q ss_pred CccEEEEEEEEeeCCCeEEEeeCCEeeCC------------------CCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKPTISWLKGSREITP------------------SARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
|++|+|.|.....+...|.|+|+...... .+|+.+..+ .+|.|.+++.+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 78999999987666667999996533211 123444444 489999999999999999999
Q ss_pred eCCcee-eEEEEEE
Q psy7042 2164 NKGGVK-STKAELI 2176 (2245)
Q Consensus 2164 N~~G~~-~~~~~l~ 2176 (2245)
+..|.. ...+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 877554 4445554
No 272
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.94 E-value=2.8e-05 Score=75.30 Aligned_cols=79 Identities=20% Similarity=0.416 Sum_probs=57.1
Q ss_pred CCCeEEEEEEEeeec----------CCceEEEEC--Ceecc--------------CCCeEEEE---EcCcEEEEEEeeec
Q psy7042 104 LGKLLTLQCEATGTP----------VPKCRWLRN--GREIS--------------SGARYRVE---TAGGVFRLHFNEVT 154 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p----------~~~i~W~~~--g~~l~--------------~~~~~~~~---~~~~~~~L~i~~~~ 154 (2245)
.|++|+|+|.....+ ...|.|+|. +.... -.+|+.+. ...+...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997544 256999984 22111 01244443 23456789999999
Q ss_pred cCCCeEEEEEEEcCcccceeEEEEEecC
Q psy7042 155 DVDNGDYTCEAYNSVGFAHTSSRVKIGT 182 (2245)
Q Consensus 155 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 182 (2245)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777777788888754
No 273
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.92 E-value=2.8e-05 Score=72.82 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=52.2
Q ss_pred ceEEeeccceeeecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEE
Q psy7042 2088 PEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2088 p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
|.|...+. ..+.+|++|+|.|...- +.-.+.|+|+|..............+..+.|.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 56666553 46889999999998764 5567999998865321100011123445689999999999999999875
No 274
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.91 E-value=7.2e-05 Score=66.10 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=50.0
Q ss_pred cEEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEEEEE-eC--cEEEEEEcCCCCCCCeEEEEEEEeCCce-eeEEEEEEEE
Q psy7042 2104 NAQFQCTITG-CPKPTISWLKGSREITPSARHHIFA-EG--DTYTLIINSVYGVDADEYVCRAVNKGGV-KSTKAELIIM 2178 (2245)
Q Consensus 2104 ~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~-~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~ 2178 (2245)
.+.|.|.+.| .|.+.|+|||++.++.......... .+ ..+.|.|.--...|...|+|+|.|.+=. .+.+..|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 3689999975 5999999999999997643211111 22 2346777544445555699999996522 4566777764
No 275
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.91 E-value=3e-05 Score=72.61 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.6
Q ss_pred CeeecCCCceEEcCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEE
Q psy7042 184 PRIDRMPNALYIPEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 259 (2245)
Q Consensus 184 P~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 259 (2245)
|.+...| ...|.+|++|+|+|.... +...+.|||+|.....-.............+.|.+++.+|+|.|.|...
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5666655 456889999999998764 5568999998876321100000112234478999999999999999976
No 276
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.90 E-value=4.1e-05 Score=73.13 Aligned_cols=68 Identities=19% Similarity=0.411 Sum_probs=52.0
Q ss_pred EEeCCCeEEEEEEEeee--cCCceEEEECC--eecc------------CCCeEEEEEcCcEEEEEEeeeccCCCeEEEEE
Q psy7042 101 VVPLGKLLTLQCEATGT--PVPKCRWLRNG--REIS------------SGARYRVETAGGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 101 ~v~~G~~v~L~C~~~g~--p~~~i~W~~~g--~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
.+.+|++|+|.|...+. ....+.|+|.. .... ..+|+.....++...|+|++++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998764 45679999832 2211 12367776666778899999999999999999
Q ss_pred EEcC
Q psy7042 165 AYNS 168 (2245)
Q Consensus 165 a~n~ 168 (2245)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 277
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.90 E-value=4.5e-05 Score=75.40 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=51.8
Q ss_pred CCcceEEeCCCeEEEEEEEeeec----CCceEEEECCe------ec---------c-CCC----eEEEEE--cCcEEEEE
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTP----VPKCRWLRNGR------EI---------S-SGA----RYRVET--AGGVFRLH 149 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~g~------~l---------~-~~~----~~~~~~--~~~~~~L~ 149 (2245)
.|..+.+.+|++++|.|...... ...|.|++... .+ . ... |+.+.. ..+.++|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35667889999999999986432 24599986221 11 0 111 223321 23457899
Q ss_pred EeeeccCCCeEEEEEEEcCccc
Q psy7042 150 FNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 150 i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
|.+++.+|+|.|.|.+.|..+.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999987654
No 278
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.88 E-value=9.4e-05 Score=71.72 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=57.3
Q ss_pred cCccEEEEEEEEeeC----------CCeEEEeeC--CEeeC--------------CCCcEEEEE---eCcEEEEEEcCCC
Q psy7042 2101 QNHNAQFQCTITGCP----------KPTISWLKG--SREIT--------------PSARHHIFA---EGDTYTLIINSVY 2151 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~P----------~p~i~W~~~--g~~l~--------------~~~~~~~~~---~~~~~~L~i~~v~ 2151 (2245)
.|++|+|.|.....+ ...|.|+|. ++.+. -.+|+.+.. +...++|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999997544 255999984 21110 012444432 2355789999999
Q ss_pred CCCCeEEEEEEEeCCceeeEEEEEEEEc
Q psy7042 2152 GVDADEYVCRAVNKGGVKSTKAELIIMT 2179 (2245)
Q Consensus 2152 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 2179 (2245)
.+|+|.|.|.+....+..+..+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999777778888888853
No 279
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.88 E-value=3.3e-05 Score=73.07 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=55.4
Q ss_pred ecCccEEEEEEEEe-eCCCeEEEeeCCEeeCC-------------CCcE--EEEEeCcEEEEEEcCCCCCCCeEEEEEEE
Q psy7042 2100 IQNHNAQFQCTITG-CPKPTISWLKGSREITP-------------SARH--HIFAEGDTYTLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2100 ~~g~~v~l~C~~~g-~P~p~i~W~~~g~~l~~-------------~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
..|++|+|.|.... .....|.|+|....+.. ..+| ++.-+++..+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998753 44556999986533220 1111 22234445689999999999999999999
Q ss_pred eCCcee-eEEEEEEE
Q psy7042 2164 NKGGVK-STKAELII 2177 (2245)
Q Consensus 2164 N~~G~~-~~~~~l~V 2177 (2245)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 988776 55577766
No 280
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.86 E-value=7.3e-05 Score=73.29 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=53.9
Q ss_pred ccceeeecCccEEEEEEEEeeC----CCeEEEeeC----CEe--e---C------CCC----cEEEEE--eCcEEEEEEc
Q psy7042 2094 LRNANAIQNHNAQFQCTITGCP----KPTISWLKG----SRE--I---T------PSA----RHHIFA--EGDTYTLIIN 2148 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g~P----~p~i~W~~~----g~~--l---~------~~~----~~~~~~--~~~~~~L~i~ 2148 (2245)
++.+.+.+|++|+|.|.....+ ...|.|++. +.+ + . ... |+.+.. ....++|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3556789999999999986443 235999741 211 1 0 111 222221 1234679999
Q ss_pred CCCCCCCeEEEEEEEeCCcee--eEEEEEE
Q psy7042 2149 SVYGVDADEYVCRAVNKGGVK--STKAELI 2176 (2245)
Q Consensus 2149 ~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~ 2176 (2245)
+++.+|+|.|.|.+.|..+.. ...+.|.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999999977653 2344443
No 281
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.86 E-value=5.4e-05 Score=72.64 Aligned_cols=75 Identities=16% Similarity=0.337 Sum_probs=52.3
Q ss_pred CeEEEEEEEeeec---CCceEEEECCee----c-----------cC--CCeEEEEEcC-cEEEEEEeeeccCCCeEEEEE
Q psy7042 106 KLLTLQCEATGTP---VPKCRWLRNGRE----I-----------SS--GARYRVETAG-GVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 106 ~~v~L~C~~~g~p---~~~i~W~~~g~~----l-----------~~--~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
++|+|.|.....+ ...|.|+|.... + .. ..|..+.... +..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997644 347999995421 0 11 1233332211 456899999999999999999
Q ss_pred EEc-CcccceeEEEEEe
Q psy7042 165 AYN-SVGFAHTSSRVKI 180 (2245)
Q Consensus 165 a~n-~~g~~~~~~~l~V 180 (2245)
+.+ ..|.....+.|+|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 874 6688888888877
No 282
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.85 E-value=3.5e-05 Score=72.86 Aligned_cols=78 Identities=22% Similarity=0.317 Sum_probs=53.8
Q ss_pred eCCCeEEEEEEEee-ecCCceEEEECCeecc--C-----------CCeE--EEEEcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 103 PLGKLLTLQCEATG-TPVPKCRWLRNGREIS--S-----------GARY--RVETAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 103 ~~G~~v~L~C~~~g-~p~~~i~W~~~g~~l~--~-----------~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
..|++|+|.|.... .....|.|+|....+. . .+++ ++...++...|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998854 4445799998643221 0 1111 23334445689999999999999999999
Q ss_pred cCcccc-eeEEEEEe
Q psy7042 167 NSVGFA-HTSSRVKI 180 (2245)
Q Consensus 167 n~~g~~-~~~~~l~V 180 (2245)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877654 34666665
No 283
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.84 E-value=7.2e-05 Score=68.15 Aligned_cols=66 Identities=24% Similarity=0.403 Sum_probs=44.3
Q ss_pred cEEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEEEEEeCc----EEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2104 NAQFQCTITG-CPKPTISWLKGSREITPSARHHIFAEGD----TYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2104 ~v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
.+.|.|.+.| +|.+.|+|+|+|+.|..........++. .+.|.+.-....|.+.|+|+|.|.+...
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 3689999975 5999999999999987443111112221 1245554444456678999999987653
No 284
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=5.2e-05 Score=72.41 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=51.9
Q ss_pred eeecCccEEEEEEEEee--CCCeEEEeeCC--Eee------------CCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2098 NAIQNHNAQFQCTITGC--PKPTISWLKGS--REI------------TPSARHHIFAEGDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~--P~p~i~W~~~g--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
.+.+|++|+|.|...+. ....+.|||.. +.+ ....++.+..++....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 47799999999998765 55679999832 111 012467777777788999999999999999998
Q ss_pred EEe
Q psy7042 2162 AVN 2164 (2245)
Q Consensus 2162 a~N 2164 (2245)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 765
No 285
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.84 E-value=9.1e-05 Score=67.28 Aligned_cols=64 Identities=22% Similarity=0.478 Sum_probs=45.7
Q ss_pred EEEEEEEEee-CCCeEEEeeCCEeeCCCCcEEEEEeCcE------EEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2105 AQFQCTITGC-PKPTISWLKGSREITPSARHHIFAEGDT------YTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2105 v~l~C~~~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~------~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
++|.|.+.|. |.+.|+|+|||+.|..... .+..+++. +.|.|.-....|...|+|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 6899999865 9999999999999876542 34333221 345554445567788999999987543
No 286
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.84 E-value=5.6e-05 Score=69.92 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=52.3
Q ss_pred ecCCCceEEcCCCeEEEEEEEec-CCCce--EEEeeCceeeecCCceEE--EEeCCeEEEEEcccCccCceeEEEEEEcC
Q psy7042 187 DRMPNALYIPEGDNTKVKIFYAG-DQPME--VSLTKNGRVVQSDDRFKF--TVLDDYIIIFIKEIRKEDAGDYTVNLSNS 261 (2245)
Q Consensus 187 ~~~~~~~~v~~G~~~~l~C~~~g-~p~~~--i~W~~~g~~l~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 261 (2245)
...+.+..+.+|+.++|.|.+.| .|.+. |.|||++..|........ .......+|.+.....+|.-.|+|+|.+.
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 34445556789999999999975 78776 799999999864321110 01123356777655555555999999987
Q ss_pred Cc
Q psy7042 262 SG 263 (2245)
Q Consensus 262 ~g 263 (2245)
.+
T Consensus 85 l~ 86 (100)
T cd05755 85 LR 86 (100)
T ss_pred cC
Confidence 54
No 287
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.76 E-value=6.4e-05 Score=71.13 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=50.5
Q ss_pred CCeEEEEEEEeeecCCceEEEECCeeccC------------------CCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 105 GKLLTLQCEATGTPVPKCRWLRNGREISS------------------GARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~~~i~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
|++|+|.|.....+...|.|+|+...... .+|+.+..+ ..|.|.+++.+|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 89999999987655668999996533210 123344333 469999999999999999999
Q ss_pred cCccc-ceeEEEEE
Q psy7042 167 NSVGF-AHTSSRVK 179 (2245)
Q Consensus 167 n~~g~-~~~~~~l~ 179 (2245)
...|. ......|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 87643 33344444
No 288
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.74 E-value=0.00015 Score=72.52 Aligned_cols=87 Identities=20% Similarity=0.371 Sum_probs=60.3
Q ss_pred ecCCcceEEeCCCeEEEEEEEe-eecCCceEEEECCe-----ecc---C-----------CCeEEEEEc--CcEEEEEEe
Q psy7042 94 IVPLKDLVVPLGKLLTLQCEAT-GTPVPKCRWLRNGR-----EIS---S-----------GARYRVETA--GGVFRLHFN 151 (2245)
Q Consensus 94 ~~~~~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~-----~l~---~-----------~~~~~~~~~--~~~~~L~i~ 151 (2245)
+.+|..+.+.+|++++|.|... ......+.|++... .+. . ..++.+..+ .+.++|.|.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 3456778999999999999998 44556799998322 111 0 124444443 346789999
Q ss_pred eeccCCCeEEEEEEEcCc-ccceeEEEEEe
Q psy7042 152 EVTDVDNGDYTCEAYNSV-GFAHTSSRVKI 180 (2245)
Q Consensus 152 ~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V 180 (2245)
+++.+|+|.|.|.+.... ........|.|
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999999762 23333445554
No 289
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.74 E-value=0.00013 Score=72.09 Aligned_cols=75 Identities=16% Similarity=0.377 Sum_probs=50.2
Q ss_pred ccceeeecCccEEEEEEEEeeC----CCeEEEeeCCE------ee---------C-CCC----cEEEEEe--CcEEEEEE
Q psy7042 2094 LRNANAIQNHNAQFQCTITGCP----KPTISWLKGSR------EI---------T-PSA----RHHIFAE--GDTYTLII 2147 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g~P----~p~i~W~~~g~------~l---------~-~~~----~~~~~~~--~~~~~L~i 2147 (2245)
|..+.+.+|+.|+|.|...... ...|.|++... .+ . ... |+.+..+ .+.++|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3455688999999999986432 24699986211 11 0 111 2222221 23468999
Q ss_pred cCCCCCCCeEEEEEEEeCCce
Q psy7042 2148 NSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2148 ~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
.+++.+|+|.|.|.+.|.-+.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987554
No 290
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.72 E-value=0.00011 Score=72.83 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=55.8
Q ss_pred ecCCcceEEeCCCeEEEEEEEeee-cCCceEEEEC--Cee---c---------cCCCeEEEEE--cCcEEEEEEeeeccC
Q psy7042 94 IVPLKDLVVPLGKLLTLQCEATGT-PVPKCRWLRN--GRE---I---------SSGARYRVET--AGGVFRLHFNEVTDV 156 (2245)
Q Consensus 94 ~~~~~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~i~~~~~~ 156 (2245)
+..|+.+.+.+|++|+|+|..... ....+.|+|. +.. + ...+|+.+.. ..+.+.|+|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 445677889999999999998653 4557999983 221 1 1135777653 345778999999999
Q ss_pred CCeEEEEEEEcC
Q psy7042 157 DNGDYTCEAYNS 168 (2245)
Q Consensus 157 d~G~Y~C~a~n~ 168 (2245)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999999853
No 291
>KOG4802|consensus
Probab=97.71 E-value=0.00034 Score=78.01 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=57.8
Q ss_pred cCCCCCcccEEeeeeCc---eEEEEecCCCCCCCCccceEEEeeeecCCC----ceEEecceeeeceEEEecCCCCceee
Q psy7042 900 DRPHPPENLHADEFAGD---SLTLYWTPPRDNGGSEITNYVVEKKDYNST----VWTKVSSYVTTPFVRVRNLAIGSTYE 972 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~---~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~----~~~~~~~~~~~~~~~i~~L~p~~~y~ 972 (2245)
..|.+|.++.+..+..+ ...|-|.|+..+ -++..|.|.|.-.-.. ...+-...-++..+.|.+|.|+..|.
T Consensus 251 kaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns~Y~ 328 (516)
T KOG4802|consen 251 KAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNSSYY 328 (516)
T ss_pred CCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCCeEE
Confidence 36777888888765433 366888887654 3999999999753211 11111112233455699999999999
Q ss_pred EEEEEEeccccCCC
Q psy7042 973 FRVMAENQYGLSKP 986 (2245)
Q Consensus 973 ~~v~a~n~~g~~~~ 986 (2245)
+.|.|...-|.+..
T Consensus 329 VevqAi~y~g~~rL 342 (516)
T KOG4802|consen 329 VEVQAISYLGSRRL 342 (516)
T ss_pred EEEEEEEeccCccc
Confidence 99999998887654
No 292
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.71 E-value=0.00018 Score=65.47 Aligned_cols=64 Identities=19% Similarity=0.399 Sum_probs=44.7
Q ss_pred EEEEEEEee-ecCCceEEEECCeeccCCCeEEEEEcCcE----EEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 108 LTLQCEATG-TPVPKCRWLRNGREISSGARYRVETAGGV----FRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 108 v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
+.|.|.+.+ .|.++|.|+|+|..+...........++. ..|.+.....+|.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999976 58899999999999874432222223332 24555555566777999999987654
No 293
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.66 E-value=0.00021 Score=72.48 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred ceEEeCCCeEEEEEEEe-eecCCceEEEECCeecc----------C--CCeEEE-EEcCcEEEEEEeeeccCCCeEEEEE
Q psy7042 99 DLVVPLGKLLTLQCEAT-GTPVPKCRWLRNGREIS----------S--GARYRV-ETAGGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~l~----------~--~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
.+.|.+|++|+|.|... +...++|.|+|....+. . .+|+.+ ...-....|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999984 55677899999643322 1 124442 3333445799999999999999999
Q ss_pred EE-cCcc-cceeEEEEEecCCCe
Q psy7042 165 AY-NSVG-FAHTSSRVKIGTPPR 185 (2245)
Q Consensus 165 a~-n~~g-~~~~~~~l~V~~~P~ 185 (2245)
.. -..| ..+..+-|+|..+-.
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~~ 126 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDSY 126 (189)
T ss_pred EEecCCCCCceeEEEEEEEchhh
Confidence 76 4455 666677788877643
No 294
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.64 E-value=0.00012 Score=69.69 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=50.3
Q ss_pred ecCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCc-EEE--EEeCcE---EEEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2100 IQNHNAQFQCTITGC-PK-PTISWLKGSREITPSAR-HHI--FAEGDT---YTLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2100 ~~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~--~~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
..|+.++|.|.+.|+ |. +.|+|++||..+..... ... ..+|.. +.|.|......|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999998 64 67999999999876553 222 223332 24666655556999999999997654
No 295
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.64 E-value=0.00034 Score=63.56 Aligned_cols=64 Identities=19% Similarity=0.443 Sum_probs=45.6
Q ss_pred EEEEEEEee-ecCCceEEEECCeeccCCCeEEEEE-cCcE----EEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 108 LTLQCEATG-TPVPKCRWLRNGREISSGARYRVET-AGGV----FRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 108 v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~-~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
++|.|.+.| .|.++|.|+|+|..+.......... +++. ..|.|.....+|...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999977 4989999999999987543322222 2222 34666566677888999999987643
No 296
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.64 E-value=0.00035 Score=66.66 Aligned_cols=77 Identities=18% Similarity=0.407 Sum_probs=55.2
Q ss_pred CCeEEEEEEEeeec-----------CCceEEEEC-----Ce-----ec--cC----------CCeEEEEEc---CcEEEE
Q psy7042 105 GKLLTLQCEATGTP-----------VPKCRWLRN-----GR-----EI--SS----------GARYRVETA---GGVFRL 148 (2245)
Q Consensus 105 G~~v~L~C~~~g~p-----------~~~i~W~~~-----g~-----~l--~~----------~~~~~~~~~---~~~~~L 148 (2245)
|++++|.|...-.| ...|.|++- |. .+ .. .+|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999997544 237999873 11 11 01 124444322 245789
Q ss_pred EEeeeccCCCeEEEEEEEcCcccceeEEEEEec
Q psy7042 149 HFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 149 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
.|.+++.+|+|.|+|.+.+........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999988777778888775
No 297
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.62 E-value=0.00037 Score=66.43 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=51.7
Q ss_pred cEEEEEEEEeeC---CCeEEEeeC--CE---eeC---C----------CCcEEEEE--eCcEEEEEEcCCCCCCCeEEEE
Q psy7042 2104 NAQFQCTITGCP---KPTISWLKG--SR---EIT---P----------SARHHIFA--EGDTYTLIINSVYGVDADEYVC 2160 (2245)
Q Consensus 2104 ~v~l~C~~~g~P---~p~i~W~~~--g~---~l~---~----------~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 2160 (2245)
+|+|.|.....+ ...|.|+|. +. .+. . .+|.++.. .....+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999986443 336999983 21 110 0 02344432 2335689999999999999999
Q ss_pred EEEe-CCceeeEEEEEEE
Q psy7042 2161 RAVN-KGGVKSTKAELII 2177 (2245)
Q Consensus 2161 ~a~N-~~G~~~~~~~l~V 2177 (2245)
.+.| ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9999 7787777788876
No 298
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.61 E-value=0.00027 Score=67.65 Aligned_cols=77 Identities=17% Similarity=0.301 Sum_probs=54.3
Q ss_pred CCeEEEEEEEeeec-------CCceEEEEC-----Ceec----cC----------CCeEEEEEc---CcEEEEEEeeecc
Q psy7042 105 GKLLTLQCEATGTP-------VPKCRWLRN-----GREI----SS----------GARYRVETA---GGVFRLHFNEVTD 155 (2245)
Q Consensus 105 G~~v~L~C~~~g~p-------~~~i~W~~~-----g~~l----~~----------~~~~~~~~~---~~~~~L~i~~~~~ 155 (2245)
|++|+|.|...-.| .+.|.|.|. ...+ .. .+|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 88999999975333 367999874 1111 01 124455432 2567899999999
Q ss_pred CCCeEEEEEEEcCcccceeEEEEEec
Q psy7042 156 VDNGDYTCEAYNSVGFAHTSSRVKIG 181 (2245)
Q Consensus 156 ~d~G~Y~C~a~n~~g~~~~~~~l~V~ 181 (2245)
+|+|.|+|.+.......+..+.|+|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866666677777775
No 299
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.60 E-value=0.00026 Score=67.76 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=54.2
Q ss_pred CCeEEEEEEecCcC-------CCeEEEeeCC-----Eec------------cC--CceEEEEe---cCcEEEEEEeeecc
Q psy7042 1712 GKLLTLQCEATGTP-------VPKCRWLRNG-----REI------------SS--GARYRVET---AGGVFRLHFNEVTD 1762 (2245)
Q Consensus 1712 G~~v~L~C~~~~~p-------~~~v~W~~~~-----~~l------------~~--~~~~~~~~---~~~~~~L~i~~v~~ 1762 (2245)
|++++|.|.+.-.| .+.|.|.|.. ... .. ..|..+.. ..+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78899999965322 4689998741 111 01 12444432 23678899999999
Q ss_pred CCCeEEEEEEecCceeeEEEEEEEec
Q psy7042 1763 VDNGDYTCEAYNSVGFAHTSSRVKIG 1788 (2245)
Q Consensus 1763 ~d~G~Y~C~~~n~~g~~~~~~~l~V~ 1788 (2245)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999877677777777774
No 300
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.60 E-value=0.00042 Score=69.14 Aligned_cols=87 Identities=16% Similarity=0.374 Sum_probs=61.4
Q ss_pred EeeccceeeecCccEEEEEEEE-eeCCCeEEEeeCCE-----eeC---C-----------CCcEEEEEeC--cEEEEEEc
Q psy7042 2091 IVPLRNANAIQNHNAQFQCTIT-GCPKPTISWLKGSR-----EIT---P-----------SARHHIFAEG--DTYTLIIN 2148 (2245)
Q Consensus 2091 ~~~~~~~~~~~g~~v~l~C~~~-g~P~p~i~W~~~g~-----~l~---~-----------~~~~~~~~~~--~~~~L~i~ 2148 (2245)
...+..+.+.+|++|.|.|... ......+.|++... .+. . ..++.+..+. ....|.|.
T Consensus 5 t~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 5 TQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 3345667899999999999998 55677899998321 111 0 1244444443 36789999
Q ss_pred CCCCCCCeEEEEEEEeC-CceeeEEEEEEE
Q psy7042 2149 SVYGVDADEYVCRAVNK-GGVKSTKAELII 2177 (2245)
Q Consensus 2149 ~v~~~d~G~Y~C~a~N~-~G~~~~~~~l~V 2177 (2245)
+++.+|+|.|.|.+... .+.......|.|
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999987 333455566654
No 301
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.60 E-value=0.00042 Score=65.94 Aligned_cols=85 Identities=42% Similarity=0.705 Sum_probs=68.2
Q ss_pred CCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecce-eeeceEEEecCCCCceeeEEEEEEec
Q psy7042 902 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY-VTTPFVRVRNLAIGSTYEFRVMAENQ 980 (2245)
Q Consensus 902 P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~~~y~~~v~a~n~ 980 (2245)
|.+|.++.+......++.|.|.++....+ .+..|.|.+.......|..+... .....+.+.+|.|++.|.++|+|.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~-~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCC-cceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 45677788887778999999999865443 67899999987665566666554 46678999999999999999999998
Q ss_pred cccCCCc
Q psy7042 981 YGLSKPA 987 (2245)
Q Consensus 981 ~g~~~~s 987 (2245)
.|.+.++
T Consensus 80 ~~~~~~s 86 (93)
T cd00063 80 GGESPPS 86 (93)
T ss_pred CccCCCc
Confidence 8877654
No 302
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.58 E-value=0.00023 Score=65.94 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=49.4
Q ss_pred eEEeCCCeEEEEEEEee-ecCCc--eEEEECCeeccCCCeEEE---EEcCcEEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 100 LVVPLGKLLTLQCEATG-TPVPK--CRWLRNGREISSGARYRV---ETAGGVFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g-~p~~~--i~W~~~g~~l~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
..+.+|+.++|+|.+.| .|.++ |.|||++..+.... +.. .......+|.+..-+.+|.-.|+|+|.+..+
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~-~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQP-FGDNTKSPVNAPATITITVDREDHGANFSCETELDLR 86 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccce-eccccCCCceeEEEEEEecchhhCCcEEEEEEEeccC
Confidence 34689999999999976 67776 79999999996432 111 1122345677766555555589999998664
No 303
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.57 E-value=0.00043 Score=70.26 Aligned_cols=85 Identities=19% Similarity=0.269 Sum_probs=63.0
Q ss_pred ceEEcCCCeEEEEEEEe-cCCCceEEEeeCceeee----------c--CCceE-EEEeCCeEEEEEcccCccCceeEEEE
Q psy7042 192 ALYIPEGDNTKVKIFYA-GDQPMEVSLTKNGRVVQ----------S--DDRFK-FTVLDDYIIIFIKEIRKEDAGDYTVN 257 (2245)
Q Consensus 192 ~~~v~~G~~~~l~C~~~-g~p~~~i~W~~~g~~l~----------~--~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~ 257 (2245)
.+.|.+|++++|.|... +...+.+.|+|....+. . .+++. +........|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 46789999999999974 66678899998633221 1 12333 33344557899999999999999998
Q ss_pred EEcC-Cc-ceEEEEEEEEecC
Q psy7042 258 LSNS-SG-SVSGTFTINITGL 276 (2245)
Q Consensus 258 a~n~-~g-~~~~~~~l~V~~~ 276 (2245)
..-- .| ..+.++.|+|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 6633 46 7888999999864
No 304
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.56 E-value=0.00025 Score=67.87 Aligned_cols=70 Identities=23% Similarity=0.367 Sum_probs=51.7
Q ss_pred eEEeCCCeEEEEEEEee-ecCCceEEEECCe-----ec--------cCCCeEEEE--EcCcEEEEEEeeeccCCCeEEEE
Q psy7042 100 LVVPLGKLLTLQCEATG-TPVPKCRWLRNGR-----EI--------SSGARYRVE--TAGGVFRLHFNEVTDVDNGDYTC 163 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~-----~l--------~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C 163 (2245)
+.+.+|++|+|.|.... .....+.|+|... .| ...+|+.+. ..++.+.|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999999864 3456799998542 11 112466664 23567899999999999999999
Q ss_pred EEEcCc
Q psy7042 164 EAYNSV 169 (2245)
Q Consensus 164 ~a~n~~ 169 (2245)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988654
No 305
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.54 E-value=0.00058 Score=64.05 Aligned_cols=74 Identities=15% Similarity=0.311 Sum_probs=50.8
Q ss_pred cEEEEEEEEee-CCC---eEEEeeCC--E--ee-----------C--CCCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2104 NAQFQCTITGC-PKP---TISWLKGS--R--EI-----------T--PSARHHIFA-EGDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2104 ~v~l~C~~~g~-P~p---~i~W~~~g--~--~l-----------~--~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
+|+|.|..... |.. .|+|.|.. . .+ . -.+|.++.. .-+.++|.|++++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999998732 211 49998841 1 11 0 012333221 12235899999999999999999
Q ss_pred EEe-CCceeeEEEEEEE
Q psy7042 2162 AVN-KGGVKSTKAELII 2177 (2245)
Q Consensus 2162 a~N-~~G~~~~~~~l~V 2177 (2245)
..| ..|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 999 7898888899987
No 306
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.53 E-value=0.00027 Score=67.31 Aligned_cols=68 Identities=31% Similarity=0.481 Sum_probs=49.8
Q ss_pred eCCCeEEEEEEEeee-cC-CceEEEECCeeccCCCe-EEE-EEcCcE----EEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 103 PLGKLLTLQCEATGT-PV-PKCRWLRNGREISSGAR-YRV-ETAGGV----FRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 103 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~-~~~-~~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
..|+.++|.|.+.|. |. ++|+|+|||..+..... ... ...++. ..|.|.....+|.|.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 469999999999997 63 68999999999876543 222 222232 2466666666799999999998654
No 307
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.53 E-value=0.00095 Score=63.74 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=55.9
Q ss_pred CccEEEEEEEEeeCC-----------CeEEEeeC-----CE-----ee--CC----------CCcEEEEEe---CcEEEE
Q psy7042 2102 NHNAQFQCTITGCPK-----------PTISWLKG-----SR-----EI--TP----------SARHHIFAE---GDTYTL 2145 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~-----------p~i~W~~~-----g~-----~l--~~----------~~~~~~~~~---~~~~~L 2145 (2245)
|.+|+|-|...-.|. +.|.|+|- |. .+ .. .+|..+..+ .+.++|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 678999999975442 36999873 11 11 01 124444322 234789
Q ss_pred EEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2146 IINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2146 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
.|.+++.+|+|.|.|...+.....+..+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999998888888999885
No 308
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.51 E-value=0.00035 Score=69.30 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=53.1
Q ss_pred eccceeeecCccEEEEEEEEee-CCCeEEEeeC--CEe---e---------CCCCcEEEEE--eCcEEEEEEcCCCCCCC
Q psy7042 2093 PLRNANAIQNHNAQFQCTITGC-PKPTISWLKG--SRE---I---------TPSARHHIFA--EGDTYTLIINSVYGVDA 2155 (2245)
Q Consensus 2093 ~~~~~~~~~g~~v~l~C~~~g~-P~p~i~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~d~ 2155 (2245)
.+..+.+.+|++|+|.|...+. ....+.|||. +.. | ...+|+.+.. ..+...|+|.+++.+|+
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds 84 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS 84 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence 3455678999999999998753 4567999982 211 1 1135677653 34567899999999999
Q ss_pred eEEEEEEEe
Q psy7042 2156 DEYVCRAVN 2164 (2245)
Q Consensus 2156 G~Y~C~a~N 2164 (2245)
|.|.|.+.+
T Consensus 85 g~Y~C~~~~ 93 (116)
T cd07706 85 AKYFCALST 93 (116)
T ss_pred EEEEEEEEC
Confidence 999999875
No 309
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.50 E-value=0.00033 Score=67.95 Aligned_cols=67 Identities=30% Similarity=0.595 Sum_probs=47.7
Q ss_pred EEeCCCeEEEEEEEeeec-CCceEEEEC--C---eec------c-----------CCCeEEE--EEcCcEEEEEEeeecc
Q psy7042 101 VVPLGKLLTLQCEATGTP-VPKCRWLRN--G---REI------S-----------SGARYRV--ETAGGVFRLHFNEVTD 155 (2245)
Q Consensus 101 ~v~~G~~v~L~C~~~g~p-~~~i~W~~~--g---~~l------~-----------~~~~~~~--~~~~~~~~L~i~~~~~ 155 (2245)
.+.+|++|+|.|.+.+.. ...+.|+|. | ..+ . ...++.+ ...+..+.|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 578999999999987543 346999983 2 110 0 0235544 2334567899999999
Q ss_pred CCCeEEEEEEEc
Q psy7042 156 VDNGDYTCEAYN 167 (2245)
Q Consensus 156 ~d~G~Y~C~a~n 167 (2245)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 310
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.49 E-value=0.00057 Score=63.31 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=51.7
Q ss_pred ccEEEEEEEEee-CCCeEEEeeCC----EeeC-----C--------CCcEEEE-EeCcEEEEEEcCCCCCCCeEEEEEEE
Q psy7042 2103 HNAQFQCTITGC-PKPTISWLKGS----REIT-----P--------SARHHIF-AEGDTYTLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2103 ~~v~l~C~~~g~-P~p~i~W~~~g----~~l~-----~--------~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
++|+|.|..... ....|+|.|.. ..+. . .+|..+. .+....+|.|.+++.+|+|.|.|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998632 23359999842 1111 0 1233332 22334589999999999999999965
Q ss_pred -eCCceeeEEEEEEE
Q psy7042 2164 -NKGGVKSTKAELII 2177 (2245)
Q Consensus 2164 -N~~G~~~~~~~l~V 2177 (2245)
.+.|+.+.+..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 58899999999987
No 311
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.46 E-value=0.00036 Score=66.29 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCeEEEEEEEeeecC-CceEEEECCe----ecc-----C--------CCeEEE-EEcCcEEEEEEeeeccCCCeEEEEEE
Q psy7042 105 GKLLTLQCEATGTPV-PKCRWLRNGR----EIS-----S--------GARYRV-ETAGGVFRLHFNEVTDVDNGDYTCEA 165 (2245)
Q Consensus 105 G~~v~L~C~~~g~p~-~~i~W~~~g~----~l~-----~--------~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a 165 (2245)
|++|+|.|....... -.|.|+|... .+. . .+|..+ ....+..+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 889999998754432 2699998432 110 0 112222 22234568999999999999999997
Q ss_pred E-cCcccceeEEEEEe
Q psy7042 166 Y-NSVGFAHTSSRVKI 180 (2245)
Q Consensus 166 ~-n~~g~~~~~~~l~V 180 (2245)
. ...|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56677777777877
No 312
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.45 E-value=0.00037 Score=66.21 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=52.4
Q ss_pred CccEEEEEEEEeeCCC-eEEEeeCCE----eeC-----C--------CCcEEE-EEeCcEEEEEEcCCCCCCCeEEEEEE
Q psy7042 2102 NHNAQFQCTITGCPKP-TISWLKGSR----EIT-----P--------SARHHI-FAEGDTYTLIINSVYGVDADEYVCRA 2162 (2245)
Q Consensus 2102 g~~v~l~C~~~g~P~p-~i~W~~~g~----~l~-----~--------~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a 2162 (2245)
|++|+|.|........ .|.|+|... .+. . .+|+.+ ..+...+.|.|.+|+.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999987543332 599998431 110 0 112222 12234568999999999999999997
Q ss_pred Ee-CCceeeEEEEEEE
Q psy7042 2163 VN-KGGVKSTKAELII 2177 (2245)
Q Consensus 2163 ~N-~~G~~~~~~~l~V 2177 (2245)
.+ ..|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 64 6788888888887
No 313
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.45 E-value=0.00051 Score=62.22 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=43.3
Q ss_pred EEEEEEEEe-eCCCeEEEeeCCEeeCCCCcEEEEE--eCc---EEEEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2105 AQFQCTITG-CPKPTISWLKGSREITPSARHHIFA--EGD---TYTLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2105 v~l~C~~~g-~P~p~i~W~~~g~~l~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
++|.|.+.| +|.+.|+|+|||+.+.......... ++. .+.|.+.--...|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999986 7888999999999986543222211 121 235666544455667799999997544
No 314
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.44 E-value=0.00088 Score=62.85 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=47.9
Q ss_pred CceEEeeccceeeecCccEEEEEEEEee-CCC-eEEEeeCCEeeCCCC---cEEEEEeCcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2087 APEIIVPLRNANAIQNHNAQFQCTITGC-PKP-TISWLKGSREITPSA---RHHIFAEGDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2087 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~-P~p-~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
+|.+........ |+.++|.|.+.|+ |+. .++|+|+|+.+..+. .+....++.......-.+...+.+.|+|+
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 455555444322 7889999999996 554 799999997443332 11112233333222333445588999999
Q ss_pred EEeCCc
Q psy7042 2162 AVNKGG 2167 (2245)
Q Consensus 2162 a~N~~G 2167 (2245)
+.+..-
T Consensus 79 V~H~~~ 84 (93)
T cd07698 79 VEHSGL 84 (93)
T ss_pred EEeCCC
Confidence 988653
No 315
>KOG1480|consensus
Probab=97.44 E-value=5.8e-05 Score=91.17 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=114.2
Q ss_pred cccceeEEEEEeeecccceEEEEEEeecCC---------------cceEEeccee------------eeeceEEECCCcc
Q psy7042 2 SVRGNTTIRFYYCEIIVDDCYIIERREVGG---------------AIWLKCNDYN------------VLECSFSVLNLVE 54 (2245)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~w~~~~~~~------------~~~~~l~i~~~~~ 54 (2245)
+++| .-++++.|+ ++.|+|.+++.+. ..|.+..+.. ..+.+..|...+.
T Consensus 19 ~a~g-~l~~~~~~p---~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v 94 (909)
T KOG1480|consen 19 SAPG-DLPHFTTEP---KSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQV 94 (909)
T ss_pred CCCC-CcceeeecC---CccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhh
Confidence 3556 555665555 4677777644432 4666665411 1224455555555
Q ss_pred CCcE-----EEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEE-eeecCCceEEEECC
Q psy7042 55 GNDY-----EFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNG 128 (2245)
Q Consensus 55 ~d~G-----~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g 128 (2245)
++.| .-+|.|..+.|...+......+. ...-.|...|....|.++..+.|.|+. .+.|+..+.|+|++
T Consensus 95 ~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~a------y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e 168 (909)
T KOG1480|consen 95 ETSGGPEDYWCQCVAWSDDGTVKSRKATVRIA------YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNE 168 (909)
T ss_pred hcccCccceeeeeeeecCCCcchhhhHHHHHH------HHHHhhccChhhheecccccccccccCcccchhhhhhccccC
Confidence 4443 44567888888655443333222 234456777778899999999999987 67899999999999
Q ss_pred eeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccccee-EEEEEecC
Q psy7042 129 REISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHT-SSRVKIGT 182 (2245)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~ 182 (2245)
..+.+........+.+ |+|..+...|.|.|+|+|.|..+.... .+.+.|..
T Consensus 169 ~~~~pd~n~~~~~d~~---li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 169 VVIDPDANVIRASDHN---LIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred CCCCccccchhhhcCC---ccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 9998866666666555 899999999999999999998876554 55555544
No 316
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.44 E-value=0.0005 Score=66.74 Aligned_cols=67 Identities=24% Similarity=0.490 Sum_probs=47.8
Q ss_pred eeecCccEEEEEEEEeeC-CCeEEEeeCCEe--------e---C-----------CCCcEEE--EEeCcEEEEEEcCCCC
Q psy7042 2098 NAIQNHNAQFQCTITGCP-KPTISWLKGSRE--------I---T-----------PSARHHI--FAEGDTYTLIINSVYG 2152 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~P-~p~i~W~~~g~~--------l---~-----------~~~~~~~--~~~~~~~~L~i~~v~~ 2152 (2245)
.+.+|++|+|.|.+.+.. ...+.|||...- | . ...++.+ ..++....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 477899999999987643 457999983210 0 0 0235554 3345567899999999
Q ss_pred CCCeEEEEEEEe
Q psy7042 2153 VDADEYVCRAVN 2164 (2245)
Q Consensus 2153 ~d~G~Y~C~a~N 2164 (2245)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 317
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.42 E-value=0.00078 Score=63.23 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=51.3
Q ss_pred eEEEEEEEeee-cCC---ceEEEEC--Ce--ecc--C-----------CCeEEEEE-cCcEEEEEEeeeccCCCeEEEEE
Q psy7042 107 LLTLQCEATGT-PVP---KCRWLRN--GR--EIS--S-----------GARYRVET-AGGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 107 ~v~L~C~~~g~-p~~---~i~W~~~--g~--~l~--~-----------~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
.|+|.|..... |.. +|.|.|. +. .+. . .+|..+.. .-+..+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999742 222 5999883 11 110 0 12333321 12335799999999999999999
Q ss_pred EEc-CcccceeEEEEEec
Q psy7042 165 AYN-SVGFAHTSSRVKIG 181 (2245)
Q Consensus 165 a~n-~~g~~~~~~~l~V~ 181 (2245)
+.+ ..|..+..+.|+|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 998 67888888888874
No 318
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.41 E-value=0.0006 Score=65.21 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=50.8
Q ss_pred eeecCccEEEEEEEEe-eCCCeEEEeeCCE-----ee--------CCCCcEEEEEe--CcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2098 NAIQNHNAQFQCTITG-CPKPTISWLKGSR-----EI--------TPSARHHIFAE--GDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g-~P~p~i~W~~~g~-----~l--------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
.+.+|++|+|.|.... .+...+.|+|... .| ...+++.+..+ +....|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5789999999999864 3566799998531 11 12345666433 4567899999999999999998
Q ss_pred EEeCC
Q psy7042 2162 AVNKG 2166 (2245)
Q Consensus 2162 a~N~~ 2166 (2245)
+.+..
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87643
No 319
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.41 E-value=0.00082 Score=64.07 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=51.3
Q ss_pred eEEEEeeeecCC---CCceeEecCCcc-----c------------cCCCCcEEEee--ecceeEEEEccCCcCCceEEEE
Q psy7042 1439 DFSIHVPFMAFP---QPAAFWFANDSI-----I------------DDSDTRVHKQL--TMNSASLVVKNSQRSDGGQYRL 1496 (2245)
Q Consensus 1439 ~~~l~c~~~~~p---~~~~~W~~~~~~-----~------------~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~c 1496 (2245)
.++|.|.+...+ ...+.|+|.... + ....+|..+.. .....+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578999997544 446899984211 1 01113444432 2356789999999999999999
Q ss_pred EEEc-CCcceeeEEEEEE
Q psy7042 1497 QLKN-PAGFDTATLHSRL 1513 (2245)
Q Consensus 1497 ~a~n-~~g~~~~~~~~~v 1513 (2245)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6777666666665
No 320
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.40 E-value=0.00057 Score=67.82 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=51.7
Q ss_pred CCcceEEeCCCeEEEEEEEeeec------CCceEEEECCe-----e-cc-----------CCCeEEEE--EcCcEEEEEE
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTP------VPKCRWLRNGR-----E-IS-----------SGARYRVE--TAGGVFRLHF 150 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p------~~~i~W~~~g~-----~-l~-----------~~~~~~~~--~~~~~~~L~i 150 (2245)
.|+.+.+.+|+.|+|.|...... ...+.|+|... . +. ..+|+.+. ...+...|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46678899999999999875221 24599998421 1 10 01355552 3455678999
Q ss_pred eeeccCCCeEEEEEEEcC
Q psy7042 151 NEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 151 ~~~~~~d~G~Y~C~a~n~ 168 (2245)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999988764
No 321
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.40 E-value=0.0011 Score=62.96 Aligned_cols=85 Identities=45% Similarity=0.693 Sum_probs=67.5
Q ss_pred CCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEcee--eeeeEEEecCCCCCEEEEEEEEEec
Q psy7042 670 PDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNT--RFTTMAITGLSPGHQYEFRVYAENV 747 (2245)
Q Consensus 670 P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~~--~~~~~~i~~L~p~t~y~~~v~a~n~ 747 (2245)
|.+|.++.+......++.|+|.+|.... ..+..|.+.+.......|...... ....+.+.+|.|++.|.|+|.|.+.
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~ 79 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG 79 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence 3466677777777899999999764433 467789999988766678777654 6678999999999999999999998
Q ss_pred ccCCCCCC
Q psy7042 748 YGRSDPST 755 (2245)
Q Consensus 748 ~G~~~~s~ 755 (2245)
.|.+.++.
T Consensus 80 ~~~~~~s~ 87 (93)
T cd00063 80 GGESPPSE 87 (93)
T ss_pred CccCCCcc
Confidence 88776655
No 322
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.38 E-value=0.00076 Score=62.50 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=52.2
Q ss_pred CeEEEEEEEeee-cCCceEEEECC----eecc-------------CCCeEEEE-EcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 106 KLLTLQCEATGT-PVPKCRWLRNG----REIS-------------SGARYRVE-TAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 106 ~~v~L~C~~~g~-p~~~i~W~~~g----~~l~-------------~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
++|+|.|..... ...+|.|.|.. ..+. -.+|..+. ...+..+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999998643 33479998832 1111 01244442 22234579999999999999999965
Q ss_pred -cCcccceeEEEEEe
Q psy7042 167 -NSVGFAHTSSRVKI 180 (2245)
Q Consensus 167 -n~~g~~~~~~~l~V 180 (2245)
...|..+.+..|+|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 67898888988887
No 323
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.37 E-value=0.00076 Score=61.11 Aligned_cols=63 Identities=22% Similarity=0.405 Sum_probs=44.4
Q ss_pred EEEEEEEee-ecCCceEEEECCeeccCCCeEEEEE-cCc----EEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 108 LTLQCEATG-TPVPKCRWLRNGREISSGARYRVET-AGG----VFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 108 v~L~C~~~g-~p~~~i~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
++|.|.+.| .|.+.|.|+|||..+.......... .++ ...|.|..-..+|...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999977 6888999999999987543222222 222 23566665556777899999998653
No 324
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.35 E-value=0.00053 Score=65.91 Aligned_cols=67 Identities=22% Similarity=0.497 Sum_probs=48.6
Q ss_pred EEeCCCeEEEEEEEeeecCCceEEEEC--C--eec---c---C------------CCeEEEEEcCcEEEEEEeeeccCCC
Q psy7042 101 VVPLGKLLTLQCEATGTPVPKCRWLRN--G--REI---S---S------------GARYRVETAGGVFRLHFNEVTDVDN 158 (2245)
Q Consensus 101 ~v~~G~~v~L~C~~~g~p~~~i~W~~~--g--~~l---~---~------------~~~~~~~~~~~~~~L~i~~~~~~d~ 158 (2245)
.+.+|++|+|.|.....-...+.|+|. | ..+ . . ..|+..........|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999986544456999983 3 111 0 0 2245555556777899999999999
Q ss_pred eEEEEEEEc
Q psy7042 159 GDYTCEAYN 167 (2245)
Q Consensus 159 G~Y~C~a~n 167 (2245)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998763
No 325
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.34 E-value=0.00085 Score=66.60 Aligned_cols=73 Identities=18% Similarity=0.369 Sum_probs=52.3
Q ss_pred ceeeEEecCCeEEEEeeeecCC------CCceeEecCCcc------c----------cCCCCcEEE--eeecceeEEEEc
Q psy7042 1429 VRDITVKAGEDFSIHVPFMAFP------QPAAFWFANDSI------I----------DDSDTRVHK--QLTMNSASLVVK 1484 (2245)
Q Consensus 1429 ~~~~~v~~g~~~~l~c~~~~~p------~~~~~W~~~~~~------~----------~~~~~~~~~--~~~~~~~~L~i~ 1484 (2245)
+..+.+.+|+.++|.|.+.... ...+.|++.... + ....+|+.+ ....+..+|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 3468999999999999987442 345899985321 1 011234444 234566899999
Q ss_pred cCCcCCceEEEEEEEcC
Q psy7042 1485 NSQRSDGGQYRLQLKNP 1501 (2245)
Q Consensus 1485 ~~~~~d~G~Y~c~a~n~ 1501 (2245)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998765
No 326
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.27 E-value=0.0016 Score=62.70 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=50.8
Q ss_pred ecCCCeeecC-CCceEEcCCCeEEEEEEEec-CC-CceEEEeeCceeeecCCceEEEEeCC------eEEEEEcccCccC
Q psy7042 180 IGTPPRIDRM-PNALYIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRFKFTVLDD------YIIIFIKEIRKED 250 (2245)
Q Consensus 180 V~~~P~~~~~-~~~~~v~~G~~~~l~C~~~g-~p-~~~i~W~~~g~~l~~~~~~~~~~~~~------~~~L~i~~~~~~d 250 (2245)
|..+|..... +.......|+.++|.|.+.| +| ...++|+|||..+..... .....++ .+.|.+.. ...|
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d 79 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDD 79 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-cccc
Confidence 4555654332 23445667889999999987 56 468999999999864322 1111111 23455554 3344
Q ss_pred ce-eEEEEEEcCC
Q psy7042 251 AG-DYTVNLSNSS 262 (2245)
Q Consensus 251 ~G-~Y~C~a~n~~ 262 (2245)
.| .|+|.+.+..
T Consensus 80 ~~~~ytC~V~H~~ 92 (111)
T cd05772 80 VHSQVTCEVQHRT 92 (111)
T ss_pred ccCceEEEEEeCC
Confidence 44 5999999875
No 327
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.24 E-value=0.0025 Score=56.06 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=52.0
Q ss_pred ceEEcCCCeEEEEEEEec--CCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEE
Q psy7042 192 ALYIPEGDNTKVKIFYAG--DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTF 269 (2245)
Q Consensus 192 ~~~v~~G~~~~l~C~~~g--~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 269 (2245)
+..+..|+.++|.|.... .|.+.|+|..-+..... ....+..+|.+..+...|+|..+|.+.-..-.....+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 346788999999999865 34559999874433211 1112345899999999999999999985544444444
Q ss_pred EEEE
Q psy7042 270 TINI 273 (2245)
Q Consensus 270 ~l~V 273 (2245)
.+.|
T Consensus 82 ~V~V 85 (88)
T cd07694 82 DIKV 85 (88)
T ss_pred eEEE
Confidence 4444
No 328
>KOG1480|consensus
Probab=97.24 E-value=0.00013 Score=88.30 Aligned_cols=181 Identities=22% Similarity=0.315 Sum_probs=114.9
Q ss_pred CCCceecCCcceEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcC---c----EEEEEEeeeccCCCe--
Q psy7042 89 EKPDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAG---G----VFRLHFNEVTDVDNG-- 159 (2245)
Q Consensus 89 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~---~----~~~L~i~~~~~~d~G-- 159 (2245)
.-|+|+..|.+..+..|..+.|.|++.. .++|...-++.-+.......+...+ + .....|.....++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~--a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~ 100 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANP--ATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGP 100 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCc--ccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCc
Confidence 4578899999988999999999999864 4444433344333333222221111 1 012333333333333
Q ss_pred -EEE--EEEEcCccccee-EEEEEecCC-CeeecCCCceEEcCCCeEEEEEEE-ecCCCceEEEeeCceeeecCCceEEE
Q psy7042 160 -DYT--CEAYNSVGFAHT-SSRVKIGTP-PRIDRMPNALYIPEGDNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFT 233 (2245)
Q Consensus 160 -~Y~--C~a~n~~g~~~~-~~~l~V~~~-P~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~ 233 (2245)
.|. |.|....|...+ .+.+.+.+. -.+...|.-..|.++..+.+.|.. .+.|...++|+|++..+.+..+....
T Consensus 101 ~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~ 180 (909)
T KOG1480|consen 101 EDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA 180 (909)
T ss_pred cceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh
Confidence 355 556666662221 122222221 234566777888999999999995 68899999999999999886655444
Q ss_pred EeCCeEEEEEcccCccCceeEEEEEEcCCcce-EEEEEEEEe
Q psy7042 234 VLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSV-SGTFTINIT 274 (2245)
Q Consensus 234 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 274 (2245)
... .|.+..++..|.|+|+|+|.|.++.. +.++.+.|.
T Consensus 181 ~d~---~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 181 SDH---NLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hcC---CccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 433 48899999999999999999998653 445555544
No 329
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.22 E-value=0.0025 Score=56.04 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=49.4
Q ss_pred eeecCccEEEEEEEEee--CCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy7042 2098 NAIQNHNAQFQCTITGC--PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~--P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 2175 (2245)
.+..|++++|+|+.... |.++|+|+-.+..... ....++ .+|.+.+|+..|+|.++|...-..-.....+.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----~~~~~~--ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----ILNQDK--KTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----eccCCc--cEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 57789999999999643 4459999975542221 112233 389999999999999999986332222333444
Q ss_pred EE
Q psy7042 2176 II 2177 (2245)
Q Consensus 2176 ~V 2177 (2245)
.|
T Consensus 84 ~V 85 (88)
T cd07694 84 KV 85 (88)
T ss_pred EE
Confidence 44
No 330
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.21 E-value=0.00082 Score=64.61 Aligned_cols=67 Identities=15% Similarity=0.344 Sum_probs=48.6
Q ss_pred eeecCccEEEEEEEEeeCCCeEEEeeCC----Ee---eC---C------------CCcEEEEEeCcEEEEEEcCCCCCCC
Q psy7042 2098 NAIQNHNAQFQCTITGCPKPTISWLKGS----RE---IT---P------------SARHHIFAEGDTYTLIINSVYGVDA 2155 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g----~~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~d~ 2155 (2245)
.+.+|++|+|.|...+.-...+.|||.. +. |. . ..++.+..+.....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 3678999999999865545569999832 11 10 0 2345555566777899999999999
Q ss_pred eEEEEEEEe
Q psy7042 2156 DEYVCRAVN 2164 (2245)
Q Consensus 2156 G~Y~C~a~N 2164 (2245)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999997653
No 331
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=97.19 E-value=0.11 Score=58.83 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=79.6
Q ss_pred eeceEEEecCCCCceeeEEEEEEeccccCCCccccC-cccccCCCCCCCCCCCCeeE--e--ecCCeEEEEecCCCCCCC
Q psy7042 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTID-PIKAKHPFDVPGAPGAPKGV--D--STEDSISLVWSKPRHDGG 1030 (2245)
Q Consensus 956 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~-~~~~~t~~~~p~~p~~~~~~--~--~~~~~v~l~W~~p~~~~~ 1030 (2245)
.-.++.+.++.|+..|.+++.+.|.... ....... ..........|.-|.++.+. . .+-++++|.|.+..+.
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~-- 202 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDR-- 202 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCC--
Confidence 3457899999999999999988774432 2221111 11112234667778888774 3 4558999999974432
Q ss_pred CccceEEEEEEecCCc--c------ceeccccccCCcce-eEEEEeecccccCCccCchhhhhhhhhcccccccccccCC
Q psy7042 1031 SPIQRYIVEKRLISDD--K------WIKASMAHIPDTSL-KYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIEN 1101 (2245)
Q Consensus 1031 ~~i~~y~v~~~~~~~~--~------~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~ 1101 (2245)
. ..|=|..+...+. . +..|. ...+.... +...=++.+..-... .....+.-+|.+|+|+
T Consensus 203 -~-~kYCvy~~~~~~~~~~~~~~~~~n~C~-~~~sr~k~e~v~Ck~~~~~n~~~~---------~~~~v~tetI~~L~PG 270 (300)
T PF10179_consen 203 -S-IKYCVYRREEHSNYQERSVSRMPNQCL-GPESRKKSEKVLCKYFHSPNSSED---------PQRAVTTETIKGLKPG 270 (300)
T ss_pred -C-ceEEEEEEEecCchhhhhhcccCccCC-CCCccccceEEEEEEEcCCccccc---------cccccceeecccCCCC
Confidence 1 3565655544433 1 12222 01111111 011101111000000 1112222379999999
Q ss_pred cEEEEEEEEEecCCCCC
Q psy7042 1102 HEYEFRVCAVNAAGQGP 1118 (2245)
Q Consensus 1102 ~~Y~~~v~A~n~~G~~~ 1118 (2245)
+.|.|.|.|.-..|.+-
T Consensus 271 ~~Yl~dV~~~~~~G~sl 287 (300)
T PF10179_consen 271 TTYLFDVYVNGPSGQSL 287 (300)
T ss_pred cEEEEEEEEecCCCcee
Confidence 99999999987666543
No 332
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.17 E-value=0.0013 Score=64.80 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=50.7
Q ss_pred CCcceEEeCCCeEEEEEEEeeec--CCceEEEE--CCee---c---c-----------CCCeEEEEEcC--cEEEEEEee
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGTP--VPKCRWLR--NGRE---I---S-----------SGARYRVETAG--GVFRLHFNE 152 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~--~g~~---l---~-----------~~~~~~~~~~~--~~~~L~i~~ 152 (2245)
.|....+.+|++|+|.|...+.- ...+.|+| .|.. | . ..+|+....+. ....|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45567889999999999876432 34599998 2221 1 0 02355555433 446799999
Q ss_pred eccCCCeEEEEEEEc
Q psy7042 153 VTDVDNGDYTCEAYN 167 (2245)
Q Consensus 153 ~~~~d~G~Y~C~a~n 167 (2245)
++.+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998864
No 333
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.14 E-value=0.0037 Score=60.13 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=49.3
Q ss_pred CCCCCceecCCcceEEeCCCeEEEEEEEeee-cC-CceEEEECCeeccCCCeEEE-EEcCcE----EEEEEeeeccCCCe
Q psy7042 87 GGEKPDFIVPLKDLVVPLGKLLTLQCEATGT-PV-PKCRWLRNGREISSGARYRV-ETAGGV----FRLHFNEVTDVDNG 159 (2245)
Q Consensus 87 ~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G 159 (2245)
.+..|.+..+. ..+..|+.++|.|.+.|. |. .+|+|+|||+.+.....-.. ..+++. ..|.+.. ...|.|
T Consensus 5 ~P~~p~i~~~~--~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~ 81 (111)
T cd05772 5 KPSVPVVSGPS--GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVH 81 (111)
T ss_pred CCCCcEeCCch--hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-cccccc
Confidence 34455444432 345578999999999884 64 68999999999864322111 122222 2355543 444544
Q ss_pred -EEEEEEEcCc
Q psy7042 160 -DYTCEAYNSV 169 (2245)
Q Consensus 160 -~Y~C~a~n~~ 169 (2245)
.|+|.+....
T Consensus 82 ~~ytC~V~H~~ 92 (111)
T cd05772 82 SQVTCEVQHRT 92 (111)
T ss_pred CceEEEEEeCC
Confidence 5999999764
No 334
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.12 E-value=0.0026 Score=58.70 Aligned_cols=77 Identities=35% Similarity=0.606 Sum_probs=55.2
Q ss_pred CCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCC---ceEEecceeeeceEEEecCCCCceeeEEEEEEe
Q psy7042 903 HPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNST---VWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAEN 979 (2245)
Q Consensus 903 ~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n 979 (2245)
.+|.++.+......++.|+|+++...++ .+|.+.+...... .|...........+.+.+|.|++.|.|+|+|.+
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence 3455577777777799999997754432 6777777653322 344444444467899999999999999999998
Q ss_pred ccc
Q psy7042 980 QYG 982 (2245)
Q Consensus 980 ~~g 982 (2245)
..|
T Consensus 79 ~~g 81 (83)
T smart00060 79 GAG 81 (83)
T ss_pred ccC
Confidence 755
No 335
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.10 E-value=0.028 Score=65.22 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=108.2
Q ss_pred eceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEEeee-cC--C
Q psy7042 44 ECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGT-PV--P 120 (2245)
Q Consensus 44 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~ 120 (2245)
...|.|.++...++|.|.=...+..-..... ...+.|.. -.+|.+...+. .+.+|+...=.|.+... |. .
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~--~~~VtV~~---yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~Sv 360 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVIN--EHHITVMS---YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSV 360 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceee--eeEEEEEE---ecCCCccccCC--ccccCCCceEEEEeeeecCCCce
Confidence 3579999999999999986654322111111 12223322 25676666544 47899999999999653 43 3
Q ss_pred ceEEEECCeeccCCC---eEEEEEcCcEEEEEEeeecc--CCCeE-----EEEEEEcCcccce-----eEEEEEecCCCe
Q psy7042 121 KCRWLRNGREISSGA---RYRVETAGGVFRLHFNEVTD--VDNGD-----YTCEAYNSVGFAH-----TSSRVKIGTPPR 185 (2245)
Q Consensus 121 ~i~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~~~~--~d~G~-----Y~C~a~n~~g~~~-----~~~~l~V~~~P~ 185 (2245)
.+.|++||.++.... .+....+|.. ++ ++-++. ..++. .+|.+.-..+..+ .++.-.|..+|.
T Consensus 361 rlrWf~ng~~V~~~~it~t~~~~~dGlF-Sr-VSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~Pt 438 (566)
T PHA03269 361 IVKWTSNFGNIGKNFITDAIKENADGLF-SS-VSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPN 438 (566)
T ss_pred EEEEEeCCcccCccccccceeecCCCce-EE-EEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCe
Confidence 599999999888522 2223333322 11 122222 22344 5999985544322 233345666665
Q ss_pred eecCCCceEEcCCCeEEEEEEEecCCC--ceEEEeeCceeeecCCceEEEEe--CCeEEEEEcc---cCccCc-eeEEEE
Q psy7042 186 IDRMPNALYIPEGDNTKVKIFYAGDQP--MEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKE---IRKEDA-GDYTVN 257 (2245)
Q Consensus 186 ~~~~~~~~~v~~G~~~~l~C~~~g~p~--~~i~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~---~~~~d~-G~Y~C~ 257 (2245)
+. +....|.- -|.+.-.|. ..+.|+.++........ .+... +.-+...|++ +..+|. -.|+|+
T Consensus 439 IS-----m~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~~~~t-~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCr 509 (566)
T PHA03269 439 VS-----IEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIEHENS-EILGVCDNNKRFVNLQSSCDTSELDGPITYSCH 509 (566)
T ss_pred EE-----EEEeCCEE---EEecccccCCCceEEEEecCCCCCCccc-eeeccCCCCCCceeecccccccccCCceeEEEE
Confidence 43 33444443 366655553 58999987666333222 22111 1222344444 333331 389998
Q ss_pred EE
Q psy7042 258 LS 259 (2245)
Q Consensus 258 a~ 259 (2245)
+.
T Consensus 510 L~ 511 (566)
T PHA03269 510 LD 511 (566)
T ss_pred Ee
Confidence 75
No 336
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.09 E-value=0.002 Score=60.28 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=44.6
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeeccCCCeEE-EEEcCc----EEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 105 GKLLTLQCEA-TGTPVPKCRWLRNGREISSGARYR-VETAGG----VFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 105 G~~v~L~C~~-~g~p~~~i~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
|+.+.|+|.+ .|.|+|.|.|+.++..+....... ....++ ...|.+..-..++...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 8899999987 568999999999998872211111 122222 23577766566677789999998654
No 337
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.05 E-value=0.003 Score=59.32 Aligned_cols=65 Identities=29% Similarity=0.504 Sum_probs=41.5
Q ss_pred CCeEEEEEEEeee-cCC-ceEEEECCeeccCCCeE-EEE-EcCcEE-EEEEeeeccCCCeEEEEEEEcCc
Q psy7042 105 GKLLTLQCEATGT-PVP-KCRWLRNGREISSGARY-RVE-TAGGVF-RLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 105 G~~v~L~C~~~g~-p~~-~i~W~~~g~~l~~~~~~-~~~-~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
|+.++|.|.+.|. |.. .|.|+|+|..+...... ... ..++.+ ......+...|.+.|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 7889999999995 543 89999999644322111 111 222332 22334455668899999998654
No 338
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.05 E-value=0.0019 Score=57.81 Aligned_cols=63 Identities=32% Similarity=0.541 Sum_probs=47.5
Q ss_pred EEEEEEEEeeCCCeEEEeeCCEeeCCCCcE----EEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2105 AQFQCTITGCPKPTISWLKGSREITPSARH----HIFAEGDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2105 v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
++|.|.+.+.|.+.+.|++++......... ..........|.|.++...|+|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 478999998888899999988766543311 111223345799999999999999999998763
No 339
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.03 E-value=0.0039 Score=58.30 Aligned_cols=68 Identities=19% Similarity=0.396 Sum_probs=43.4
Q ss_pred CccEEEEEEEE-eeCCCeEEEeeCCEeeCCCCcEEE-EEe-Cc---EEEEEEcCCCCCCCeEEEEEEEeCCcee
Q psy7042 2102 NHNAQFQCTIT-GCPKPTISWLKGSREITPSARHHI-FAE-GD---TYTLIINSVYGVDADEYVCRAVNKGGVK 2169 (2245)
Q Consensus 2102 g~~v~l~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~-~~~-~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 2169 (2245)
|+.+.|.|.+. |+|+|.|+|+.++..+........ ..+ +. .+.|.+.--...|...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999775 789999999999987721111111 111 11 2356665433445666999999986544
No 340
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.93 E-value=0.0069 Score=56.56 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=44.7
Q ss_pred eecCccEEEEEEEEee-CCC-eEEEeeCCEeeCCCCc-EEEEEe--CcEEEEEEcCCCCCCCeEEEEEEEeCCc
Q psy7042 2099 AIQNHNAQFQCTITGC-PKP-TISWLKGSREITPSAR-HHIFAE--GDTYTLIINSVYGVDADEYVCRAVNKGG 2167 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g~-P~p-~i~W~~~g~~l~~~~~-~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 2167 (2245)
+..|+.++|.|.+.|+ |.. .++|+|||+.+..+.. .....+ +.......-.+..++...|+|.+.....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3468899999999985 554 6999999998776421 122222 3333222223445567789999988654
No 341
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.90 E-value=0.0086 Score=55.31 Aligned_cols=67 Identities=24% Similarity=0.384 Sum_probs=44.0
Q ss_pred eecCccEEEEEEEEee-C-CCeEEEeeCCEeeCCCCc-EEEE--EeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2099 AIQNHNAQFQCTITGC-P-KPTISWLKGSREITPSAR-HHIF--AEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g~-P-~p~i~W~~~g~~l~~~~~-~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
+..|+..+|.|.+.|+ | ...++|+|||+.+. +.. ..+. .|+......--.+..++...|+|.+....
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 3457778999999985 4 34589999999887 331 1122 23433333333345678888999998753
No 342
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.89 E-value=0.0061 Score=54.39 Aligned_cols=63 Identities=24% Similarity=0.574 Sum_probs=42.3
Q ss_pred cEEEEEEEEee-CC-CeEEEeeCCEeeCCCCcE-EEE--EeCcE---EEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2104 NAQFQCTITGC-PK-PTISWLKGSREITPSARH-HIF--AEGDT---YTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2104 ~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~~-~~~--~~~~~---~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
.++|.|.+.|+ |+ ..|+|+|||+++..+... ... .+|.. +.|.|......+...|+|++.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999986 55 689999999975543211 111 23332 246666556677789999998754
No 343
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.89 E-value=0.0055 Score=60.37 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCCceEEcCCCeEEEEEEEecCC--CceEEEeeC---cee--e---e-----------cCCceEEEEeC--CeEEEEEcc
Q psy7042 189 MPNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKN---GRV--V---Q-----------SDDRFKFTVLD--DYIIIFIKE 245 (2245)
Q Consensus 189 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~---g~~--l---~-----------~~~~~~~~~~~--~~~~L~i~~ 245 (2245)
.|....+.+|++|+|.|...+.- ...+.|||- +.+ | . ...++.+.... ....|.|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 46678899999999999876432 456999972 222 1 0 01234444332 345799999
Q ss_pred cCccCceeEEEEEEc
Q psy7042 246 IRKEDAGDYTVNLSN 260 (2245)
Q Consensus 246 ~~~~d~G~Y~C~a~n 260 (2245)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 344
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.86 E-value=0.0029 Score=56.49 Aligned_cols=62 Identities=40% Similarity=0.666 Sum_probs=46.6
Q ss_pred EEEEEEEeeecCCceEEEECCeeccCCCe----EEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 108 LTLQCEATGTPVPKCRWLRNGREISSGAR----YRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 108 v~L~C~~~g~p~~~i~W~~~g~~l~~~~~----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
+.|.|.+.+.+...+.|++++........ ...........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47999998877889999998877654321 111122344579999999999999999998765
No 345
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.80 E-value=0.0094 Score=55.33 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=42.0
Q ss_pred ecCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCc---EEEEEeCcEE---EEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2100 IQNHNAQFQCTITGC-PK-PTISWLKGSREITPSAR---HHIFAEGDTY---TLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2100 ~~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~---~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
..|+.++|.|.+.|+ |. ..++|.|||+.+..+.. .....|+... .|.+. .++...|+|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 446778999999985 54 55999999998865421 1112233332 34443 456678999998753
No 346
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.76 E-value=0.085 Score=60.80 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred ceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEEeee-cC--Cc
Q psy7042 45 CSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGT-PV--PK 121 (2245)
Q Consensus 45 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~~ 121 (2245)
..|.|..++...+|.|+=..-+..+..... ..+.|.. ..+|.+...+. .+.+|+...=.|.+... |. ..
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~---~~VtV~~---yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~ 253 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYG---TWTRVRM---FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAA 253 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeee---eEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence 459999999999999999876655533222 2233322 35777766554 37899999999999653 43 25
Q ss_pred eEEEECCeeccCCCe--E-EEEEcCcEEEEEEeeeccCCCe------EEEEEEEcCcccc-e----eEEEEEecCCCeee
Q psy7042 122 CRWLRNGREISSGAR--Y-RVETAGGVFRLHFNEVTDVDNG------DYTCEAYNSVGFA-H----TSSRVKIGTPPRID 187 (2245)
Q Consensus 122 i~W~~~g~~l~~~~~--~-~~~~~~~~~~L~i~~~~~~d~G------~Y~C~a~n~~g~~-~----~~~~l~V~~~P~~~ 187 (2245)
+.|++||.++..... . .....++ + ..++-++..+.+ ..+|.+.-..+.. . .++.-.|..+|.+.
T Consensus 254 lrWf~ng~~V~~~~~i~~~~~~~~dG-f-s~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Is 331 (466)
T PHA03270 254 FRWFEGGDEVFAPERVRTRVDAQRDG-F-SATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIE 331 (466)
T ss_pred EEEEeCCccccCcceeeeeeEecCCC-e-eEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEE
Confidence 999999998864221 1 1122222 1 123333444433 6799998554432 1 23334456666543
Q ss_pred cCCCceEEcCCCeEEEEEEEecCC-CceEEEeeCceeee
Q psy7042 188 RMPNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVVQ 225 (2245)
Q Consensus 188 ~~~~~~~v~~G~~~~l~C~~~g~p-~~~i~W~~~g~~l~ 225 (2245)
+....|.-+ |.+.-.| ...+.|..++....
T Consensus 332 -----v~F~dG~AV---CtA~CVPegV~l~W~V~D~~~p 362 (466)
T PHA03270 332 -----MEFGGDEAV---CTAACVPEGVTLAWLLGADPAP 362 (466)
T ss_pred -----EEEeCCEEE---EeccccCCCCEEEEEecCCCCC
Confidence 333444332 5554334 45899988765553
No 347
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=96.75 E-value=0.0079 Score=55.35 Aligned_cols=74 Identities=39% Similarity=0.650 Sum_probs=52.4
Q ss_pred CceeeeccCCcEEEEecCCCCCCCcceeeeEEEEeecccc---ceEEcccceecceEEecCCCCCceEEEEEEEeccccC
Q psy7042 1237 PLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATG---FWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGV 1313 (2245)
Q Consensus 1237 ~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~ 1313 (2245)
++.+......++.++|++|...++ .+|.+.+...... .|...........+.+.+|.+++.|.|+|+|.+..|.
T Consensus 6 ~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 6 NLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred cEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 366666677799999997754322 6677776654322 2444433333678999999999999999999987553
No 348
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.75 E-value=0.1 Score=59.54 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=93.4
Q ss_pred eeceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEEeee-cC--
Q psy7042 43 LECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGT-PV-- 119 (2245)
Q Consensus 43 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~-- 119 (2245)
.+..|.|.++...|.|.|+....+..-..... .... ..+-..+|.+...+.. +.+|+...=.|.+... |+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e-~~~~----~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~S 277 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLD-KHIY----IRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGS 277 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCcccc-ceEE----EEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCc
Confidence 34679999999999997766655433222211 1111 1233467777775543 7899999999999763 43
Q ss_pred CceEEEECCeeccCCCe--EE---EEEcCc-E--EEEEEeeeccCCCeEEEEEEEcCccccee----EEEEEecCCCeee
Q psy7042 120 PKCRWLRNGREISSGAR--YR---VETAGG-V--FRLHFNEVTDVDNGDYTCEAYNSVGFAHT----SSRVKIGTPPRID 187 (2245)
Q Consensus 120 ~~i~W~~~g~~l~~~~~--~~---~~~~~~-~--~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~----~~~l~V~~~P~~~ 187 (2245)
..+.|++||.++..... .. +...++ + .+|.+.+...+..=..+|.+.-..+...+ ++.-.|..+|.+.
T Consensus 278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS 357 (490)
T PHA03271 278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS 357 (490)
T ss_pred eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence 25999999998864321 11 111111 1 12222222222222789999965552222 2223345555442
Q ss_pred cCCCceEEcCCCeEEEEEEEecCC-CceEEEeeCceee
Q psy7042 188 RMPNALYIPEGDNTKVKIFYAGDQ-PMEVSLTKNGRVV 224 (2245)
Q Consensus 188 ~~~~~~~v~~G~~~~l~C~~~g~p-~~~i~W~~~g~~l 224 (2245)
+....|.-+ |.+.-.| ...+.|..++.++
T Consensus 358 -----v~FedG~AV---CtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 358 -----LAFKDGYAI---CTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred -----EEEeCCEEE---EeccccCCCcEEEEEecCCCC
Confidence 334445433 5544333 4589998766554
No 349
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.73 E-value=0.072 Score=62.09 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=95.1
Q ss_pred ceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceecCCcceEEeCCCeEEEEEEEeee-cC--Cc
Q psy7042 45 CSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGT-PV--PK 121 (2245)
Q Consensus 45 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~-p~--~~ 121 (2245)
..|.|..++..++|.|+=...+..|..... ..+.|.. -.+|.+...+. .+.+|+...=.|.+... |. ..
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~---~~VtV~~---yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~ 269 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNS---TSVTVST---YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVK 269 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeee---eEEEEEE---ecCCcccccCC--ccccCCCceEEEEeeeecCCCceE
Confidence 569999999999999987655544432222 2222222 25777766554 47899999999999653 43 35
Q ss_pred eEEEECCeeccCCC----eEEEEEcCc---EEEEEEeeecc-CCCeEEEEEEEcCcccce-----eEEEEEecCCCeeec
Q psy7042 122 CRWLRNGREISSGA----RYRVETAGG---VFRLHFNEVTD-VDNGDYTCEAYNSVGFAH-----TSSRVKIGTPPRIDR 188 (2245)
Q Consensus 122 i~W~~~g~~l~~~~----~~~~~~~~~---~~~L~i~~~~~-~d~G~Y~C~a~n~~g~~~-----~~~~l~V~~~P~~~~ 188 (2245)
+.|++||.++.... ......+|. .++|++.+... +..=..+|.+.-..+..+ .++.-.|..+|.+.
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is- 348 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS- 348 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE-
Confidence 99999999988322 122223333 22333333211 222367999985544321 13334456666543
Q ss_pred CCCceEEcCCCeEEEEEEEecCCC--ceEEEeeCc
Q psy7042 189 MPNALYIPEGDNTKVKIFYAGDQP--MEVSLTKNG 221 (2245)
Q Consensus 189 ~~~~~~v~~G~~~~l~C~~~g~p~--~~i~W~~~g 221 (2245)
+....|.- -|.+.-.|. ..+.|+.++
T Consensus 349 ----~~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 349 ----VTVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred ----EEEeCCEE---EEecccccCCCeeEEEEccC
Confidence 33444433 366665553 689998766
No 350
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.71 E-value=0.0033 Score=57.71 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=41.8
Q ss_pred eEEEEEEEeeecCC--ceEEEECCe--e---cc-------------CCCeEEEEEc--CcEEEEEEeeeccCCCeEEEEE
Q psy7042 107 LLTLQCEATGTPVP--KCRWLRNGR--E---IS-------------SGARYRVETA--GGVFRLHFNEVTDVDNGDYTCE 164 (2245)
Q Consensus 107 ~v~L~C~~~g~p~~--~i~W~~~g~--~---l~-------------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~ 164 (2245)
+|+|.|.......+ .+.|++... . +. ..+|+.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765443 799988431 1 10 1236665544 5678899999999999999996
Q ss_pred E
Q psy7042 165 A 165 (2245)
Q Consensus 165 a 165 (2245)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 351
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.65 E-value=0.0092 Score=55.51 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=47.1
Q ss_pred CeEEEEEEecC-cCCCeEEEeeCCE----ec-----------cC--CceEEEEe-cCcEEEEEEeeeccCCCeEEEEEEe
Q psy7042 1713 KLLTLQCEATG-TPVPKCRWLRNGR----EI-----------SS--GARYRVET-AGGVFRLHFNEVTDVDNGDYTCEAY 1773 (2245)
Q Consensus 1713 ~~v~L~C~~~~-~p~~~v~W~~~~~----~l-----------~~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~ 1773 (2245)
++++|.|.... ....+|+|.|-.. .+ .. ..|..+.. .....+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999853 2355789987421 11 00 12333321 1245679999999999999999995
Q ss_pred c-CceeeEEEEEE
Q psy7042 1774 N-SVGFAHTSSRV 1785 (2245)
Q Consensus 1774 n-~~g~~~~~~~l 1785 (2245)
. ..|..++...+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 46766665544
No 352
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.65 E-value=0.0047 Score=58.60 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=48.8
Q ss_pred CCeeecC-CCceEEcCCCeEEEEEEEec-CC-CceEEEeeCceeeecCCce-E-EEE-eCC---eEEEEEcccCccCcee
Q psy7042 183 PPRIDRM-PNALYIPEGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDRF-K-FTV-LDD---YIIIFIKEIRKEDAGD 253 (2245)
Q Consensus 183 ~P~~~~~-~~~~~v~~G~~~~l~C~~~g-~p-~~~i~W~~~g~~l~~~~~~-~-~~~-~~~---~~~L~i~~~~~~d~G~ 253 (2245)
||.+... |.......++.++|.|.+.| +| ...|+|+|||..+..+... . ... ++. .+.|.+..-..++...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 3444433 33334557888999999988 56 6789999999998533110 1 111 111 1245554444445679
Q ss_pred EEEEEEcCC
Q psy7042 254 YTVNLSNSS 262 (2245)
Q Consensus 254 Y~C~a~n~~ 262 (2245)
|+|.+.+..
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999998764
No 353
>KOG1026|consensus
Probab=96.63 E-value=0.0021 Score=80.94 Aligned_cols=353 Identities=16% Similarity=0.223 Sum_probs=180.4
Q ss_pred ccccccccceeeEEEEeccCcCeEEEEeCCeecCCCccEEEEeeCCeEEEEEecccccCCceEEEEEEeCCCCCCcceeE
Q psy7042 489 NANAIQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 568 (2245)
Q Consensus 489 ~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 568 (2245)
...+..|..+++.|.+.+.|.+...|+.......+.......-. .. ...+.+ +.|.+.|..|....++.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeee
Confidence 45567889999999999999999999988765544221111111 11 111111 899999999999888888
Q ss_pred eEecCCCCCCCCCcccceEeeCCCeEEEEEee---eecCCCeEEEEeCCeEeeccCeEEEEecCCeEEEEEcCCCCCcCE
Q psy7042 569 IIMTAPKFNVPPRFRDTAYFDKGENVVVKIPF---TGYPKPKITWYRDNEVIESGGHFHVETSERHAILTIRDASNVDTA 645 (2245)
Q Consensus 569 ~v~~~p~~~~~p~~~~~~~~~~g~~~~l~C~~---~g~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 645 (2245)
.+..++....+..... + .=.|.. .+.|.+...|..++..+...+.......+...-+........+.|
T Consensus 271 ~~~~p~~~~~~~~~~~-------~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~ 341 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLS-------D--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNG 341 (774)
T ss_pred EEecccccccCCCCcc-------c--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccC
Confidence 8776644322221111 0 122333 356677889999887654333222222221122333334567889
Q ss_pred EEEEEEEeCCCCceeEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeC--CCCCeEEEceee
Q psy7042 646 PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREH--PMSSWIRVGNTR 723 (2245)
Q Consensus 646 ~y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~--~~~~w~~~~~~~ 723 (2245)
.|+|.+.|..|.........+...|........... . .-+..+..|.+..... +.......+..-
T Consensus 342 ~~~~~~e~~~g~~~~r~~g~~~~~P~~~~~~~~~~~----~---------~~~~~~ps~~~~~~~~~~~~~~~~i~g~~~ 408 (774)
T KOG1026|consen 342 NYTLFPELPGGKNYCRNPGGFMSRPWMYCFDNDKTF----E---------PSLCDIPSCDIKDKKSEDPTGISAIVGISV 408 (774)
T ss_pred cceeeecccCccccccCcCccccCCCcccccccccc----C---------cccCCCCCcccccccccCCcceEEEecchH
Confidence 999999999998877777777666641000000000 0 0000011111111110 000000111000
Q ss_pred ------eeeEEEecCCCCCEEEEE---EEEEecccCCCCCCCCccEEecCccccccccccccccCCCceeeccccccccc
Q psy7042 724 ------FTTMAITGLSPGHQYEFR---VYAENVYGRSDPSTTSDLITTKDTFKKQIKKRQYDFDETGKKIRGKADEKVSD 794 (2245)
Q Consensus 724 ------~~~~~i~~L~p~t~y~~~---v~a~n~~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 794 (2245)
...+.+..+.--..|..+ ..-.+..|.+.++..-.. +.. .+.+.......
T Consensus 409 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~---~~~-----------------~l~~~~~~~~~- 467 (774)
T KOG1026|consen 409 FAILLLLLLFFLVNCGRRNKFGMKSSSPLHRILNGTSTPSSSQTG---EMT-----------------VLIGSTQHPVI- 467 (774)
T ss_pred hHHHHHHHHHHhhhhhcccccCCCcchHHHhcccCCCCcCccccc---ccc-----------------cccccccCCCc-
Confidence 000000001100111000 000111121111111100 000 00000000000
Q ss_pred CCceEEEEeeecc-CccccccccceecccccccccccCceeEEEEeeecccC-----CeeEEEeeccCCch-hhhhhhee
Q psy7042 795 YDQYVFDIYSKYV-PQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTG-----NIFAAKFIPVSHNL-EKELIRKE 867 (2245)
Q Consensus 795 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~ 867 (2245)
.+... ..+-....+..+......+.+|.|+|++++..+..... ..+++|+++-.... ...++.+|
T Consensus 468 --------~~~~~~~~~~~~~~~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE 539 (774)
T KOG1026|consen 468 --------ENKEPQLNPDLKVLEIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE 539 (774)
T ss_pred --------cccCCCCCCccceeEechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH
Confidence 00000 00011112223444556789999999999887666554 45677777655555 78899999
Q ss_pred eeeeeccCCCceEeecccccCCcceEEEEEEecCC
Q psy7042 868 IDIMNQLHHPKLINLHDAFEDDDEMVLIFEVLDRP 902 (2245)
Q Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 902 (2245)
+.++...+|++++++.+.|....+..+.++..+-.
T Consensus 540 aeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~G 574 (774)
T KOG1026|consen 540 AELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHG 574 (774)
T ss_pred HHHHHhccCCCeEEEEEEEccCCeeEEEEEecccc
Confidence 99999999999999999999999999999886443
No 354
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.62 E-value=0.0061 Score=57.80 Aligned_cols=69 Identities=14% Similarity=0.290 Sum_probs=43.9
Q ss_pred eeecCccEEEEEEEEee-C-CCeEEEeeCCEeeCCCCcE-E-EE-EeCcEE---EEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2098 NAIQNHNAQFQCTITGC-P-KPTISWLKGSREITPSARH-H-IF-AEGDTY---TLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2098 ~~~~g~~v~l~C~~~g~-P-~p~i~W~~~g~~l~~~~~~-~-~~-~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
....++.++|.|.+.|+ | ...|+|+|||+.+..+... . .. .+|... .|.+..-.-.+...|+|++....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 34467889999999984 6 5669999999988643210 1 11 244332 34443333334678999998764
No 355
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.60 E-value=0.011 Score=55.16 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=43.7
Q ss_pred CeEEEEEEE-ecCCCceEEEeeCceeeecCCceEEEE--eC---CeEEEEEcccCccCceeEEEEEEcCCc--ceEEEEE
Q psy7042 199 DNTKVKIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTV--LD---DYIIIFIKEIRKEDAGDYTVNLSNSSG--SVSGTFT 270 (2245)
Q Consensus 199 ~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~ 270 (2245)
....+.|.+ .|+|+++|+|+++. .......... .+ ..+.|.+.....+|.-.|+|++.|..- ....++.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~ 92 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT 92 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 346789997 58999999999971 1111111111 11 124677766666666799999999863 3444444
Q ss_pred EE
Q psy7042 271 IN 272 (2245)
Q Consensus 271 l~ 272 (2245)
|.
T Consensus 93 L~ 94 (95)
T cd05719 93 LN 94 (95)
T ss_pred ee
Confidence 43
No 356
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.56 E-value=0.34 Score=55.00 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=61.2
Q ss_pred ccceeEEEEE--EcCCcceeEEEEEE-EECCCC------CCCCCceeeec----cCCcEEEEecCCCCCCCcceeeeEEE
Q psy7042 1203 TDSGSYTIQL--VNTVGSDSASCKVY-VVDKPS------PPQGPLDVSDI----TPESCSLSWKPPLDDGGSPITNYVVE 1269 (2245)
Q Consensus 1203 ~~~~~Y~~~a--~n~~g~~~~s~~~~-v~~~p~------~p~~~~~~~~~----~~~s~~l~W~~p~~~~g~~i~~Y~v~ 1269 (2245)
.++..|.+++ .| ..+......+. +.+.+. -| .+..+... +-++++|.|.+..+. . ..|.|+
T Consensus 136 ~~g~~Yliri~~~~-~~e~~~~~kV~aast~~~~~~~P~LP-~d~~Ik~f~~lrtC~SvTIAW~~s~d~--~--~kYCvy 209 (300)
T PF10179_consen 136 KPGERYLIRIQISN-SDEGPSTFKVQAASTNPSKQPYPQLP-DDTSIKEFNKLRTCNSVTIAWLGSPDR--S--IKYCVY 209 (300)
T ss_pred CCCCeEEEEEEccC-CCCCceEEEEEEecCCcccCCCCCCC-CCCceeEEcCCcccceEEEEEecCCCC--C--ceEEEE
Confidence 5666787777 44 33345555666 333322 22 33444333 338899999975432 1 479887
Q ss_pred Eeecccc--c--------------------eEEcc---c-------ceecceEEecCCCCCceEEEEEEEeccccCCC
Q psy7042 1270 KYESATG--F--------------------WSKLS---S-------FVRSPAYDVFGLETNRQYRFRVRAENQYGVSE 1315 (2245)
Q Consensus 1270 ~~~~~~~--~--------------------~~~~~---~-------~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~ 1315 (2245)
.++.... . +.... . .......+|.+|+||+.|.|.|.|.-..|.+.
T Consensus 210 ~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl 287 (300)
T PF10179_consen 210 RREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSL 287 (300)
T ss_pred EEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCcee
Confidence 6644332 0 11110 0 00112357999999999999999987666544
No 357
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.54 E-value=0.0057 Score=50.35 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=36.8
Q ss_pred ecCccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeC
Q psy7042 2100 IQNHNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNK 2165 (2245)
Q Consensus 2100 ~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 2165 (2245)
+.|.+|+|+|...+. .|.|.+|+..+.... . .+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------~--~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------E--KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC--------c--eEEeeccC-CCCceEEEEeCCC
Confidence 468999999986522 299999996665432 1 34444444 8999999999654
No 358
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.54 E-value=0.012 Score=52.47 Aligned_cols=63 Identities=30% Similarity=0.465 Sum_probs=41.2
Q ss_pred eEEEEEEEeee-cC-CceEEEECCeeccCCCeE-EEEE-cCcE----EEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 107 LLTLQCEATGT-PV-PKCRWLRNGREISSGARY-RVET-AGGV----FRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 107 ~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~~-~~~~-~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
.++|.|.+.|. |+ ..|.|+|||..+..+... .... .++. ..|.|.....++...|+|.|....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999985 55 689999999975543211 1111 2332 245555556677889999998643
No 359
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.54 E-value=0.0069 Score=55.61 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=41.6
Q ss_pred cEEEEEEEEeeCCC--eEEEeeCCE-----ee-------------CCCCcEEEEEe--CcEEEEEEcCCCCCCCeEEEEE
Q psy7042 2104 NAQFQCTITGCPKP--TISWLKGSR-----EI-------------TPSARHHIFAE--GDTYTLIINSVYGVDADEYVCR 2161 (2245)
Q Consensus 2104 ~v~l~C~~~g~P~p--~i~W~~~g~-----~l-------------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~ 2161 (2245)
+|+|.|.+.+...+ .+.|++... .+ ....|+.+..+ .+...|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998765543 799998431 01 11245666554 5667899999999999999995
No 360
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.54 E-value=0.011 Score=55.32 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=41.2
Q ss_pred cCCCeEEEEEEEec-CCC-ceEEEeeCceeeecCCc-eEEEEeC--Ce---EEEEEcccCccCceeEEEEEEcCC
Q psy7042 196 PEGDNTKVKIFYAG-DQP-MEVSLTKNGRVVQSDDR-FKFTVLD--DY---IIIFIKEIRKEDAGDYTVNLSNSS 262 (2245)
Q Consensus 196 ~~G~~~~l~C~~~g-~p~-~~i~W~~~g~~l~~~~~-~~~~~~~--~~---~~L~i~~~~~~d~G~Y~C~a~n~~ 262 (2245)
..|+.++|.|.+.| +|. ..++|+|||..+..+.. ......+ .. +.|.+ ...+...|+|.+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence 36889999999998 563 47899999998765411 1111111 11 23433 3446668999998764
No 361
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=96.51 E-value=0.016 Score=53.97 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=47.6
Q ss_pred ccEEEEEEEEe-eCCCeEEEeeCCE----eeC-----------C--CCcEEEEE-eCcEEEEEEcCCCCCCCeEEEEEEE
Q psy7042 2103 HNAQFQCTITG-CPKPTISWLKGSR----EIT-----------P--SARHHIFA-EGDTYTLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2103 ~~v~l~C~~~g-~P~p~i~W~~~g~----~l~-----------~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
+.++|.|.... .....++|.|... .+. . .+|..+.. .....+|+|.+|+.+|+|.|.|...
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899998752 2345588998421 111 0 12333321 1233589999999999999999988
Q ss_pred e-CCceeeEEEEE
Q psy7042 2164 N-KGGVKSTKAEL 2175 (2245)
Q Consensus 2164 N-~~G~~~~~~~l 2175 (2245)
+ +.|..+..+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 7 57877766665
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.47 E-value=0.014 Score=54.29 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=43.6
Q ss_pred cCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCc---EEEEEeCcEE---EEEEcCCCCCCCeEEEEEEEeCCceee
Q psy7042 2101 QNHNAQFQCTITGC-PK-PTISWLKGSREITPSAR---HHIFAEGDTY---TLIINSVYGVDADEYVCRAVNKGGVKS 2170 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~---~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 2170 (2245)
.++.++|.|.+.|+ |. ..|+|+|||..+..+.. .....++... .|.+..-.-.+...|+|.+.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 45679999999985 65 56999999998743321 1112233222 344443222356789999998765544
No 363
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.44 E-value=0.018 Score=53.54 Aligned_cols=66 Identities=24% Similarity=0.403 Sum_probs=40.6
Q ss_pred eCCCeEEEEEEEeee-cC-CceEEEECCeeccCCCeE-EEE-EcCcEEE-EEEeeeccCCCeEEEEEEEcC
Q psy7042 103 PLGKLLTLQCEATGT-PV-PKCRWLRNGREISSGARY-RVE-TAGGVFR-LHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 103 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~~-~~~-~~~~~~~-L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
..|+.++|.|.+.|. |. ..++|.|||..+..+... ... ..++.+. .....+..++...|+|.+...
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 346778999999984 53 578999999988653211 111 1222221 111233445667899999864
No 364
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.39 E-value=0.02 Score=52.91 Aligned_cols=65 Identities=28% Similarity=0.403 Sum_probs=42.4
Q ss_pred eCCCeEEEEEEEeee-c-CCceEEEECCeeccCCCeE-EEEE-cCcEE-EEEEeeeccCCCeEEEEEEEcC
Q psy7042 103 PLGKLLTLQCEATGT-P-VPKCRWLRNGREISSGARY-RVET-AGGVF-RLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 103 ~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~l~~~~~~-~~~~-~~~~~-~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
..|+..+|.|.+.|. | ...|.|+|||..+. +... .+.. .++.+ ......+...+.-.|.|.+.-.
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 457888999999984 4 45789999999987 3221 1222 22222 2222345667778899999864
No 365
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.37 E-value=0.021 Score=53.24 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=42.0
Q ss_pred CCeEEEEEEE-eeecCCceEEEECCeeccCCCeEE--EEEcCc---EEEEEEeeeccCCCeEEEEEEEcCcccc
Q psy7042 105 GKLLTLQCEA-TGTPVPKCRWLRNGREISSGARYR--VETAGG---VFRLHFNEVTDVDNGDYTCEAYNSVGFA 172 (2245)
Q Consensus 105 G~~v~L~C~~-~g~p~~~i~W~~~g~~l~~~~~~~--~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 172 (2245)
.....+.|.+ .|.|.++|.|+++. ....... ...++. ...|.+.....+|.-.|+|+|.+..-..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 3567889999 57899999999971 1111111 111221 2357776667777778999999876433
No 366
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.36 E-value=0.016 Score=53.94 Aligned_cols=67 Identities=21% Similarity=0.356 Sum_probs=42.1
Q ss_pred CCCeEEEEEEEeee-cC-CceEEEECCeeccCCCeE--EEEEcCcEE----EEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 104 LGKLLTLQCEATGT-PV-PKCRWLRNGREISSGARY--RVETAGGVF----RLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~~--~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
.++.++|.|.+.|. |. .+|.|+|||..+..+... .....++.+ .|.+..-...+...|+|.|.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 45679999999984 54 579999999987432111 112223332 344443333456789999987543
No 367
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.32 E-value=0.018 Score=54.24 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=47.6
Q ss_pred CcceEEeCCCeEEEEEEEeeecC---CceEEEE--CCeecc--------------CCCeEE--EEEcCcEEEEEEeeecc
Q psy7042 97 LKDLVVPLGKLLTLQCEATGTPV---PKCRWLR--NGREIS--------------SGARYR--VETAGGVFRLHFNEVTD 155 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g~p~---~~i~W~~--~g~~l~--------------~~~~~~--~~~~~~~~~L~i~~~~~ 155 (2245)
+....+..|+.++|.|+++|.-. -.++|.| +| .+. ..+++. ....++..+|+|.+++.
T Consensus 5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 34456777999999999977543 3588988 33 211 112333 23445678999999999
Q ss_pred CCCeEEEEEE
Q psy7042 156 VDNGDYTCEA 165 (2245)
Q Consensus 156 ~d~G~Y~C~a 165 (2245)
+|++.|.|..
T Consensus 84 ~DTa~Y~Ca~ 93 (115)
T cd05721 84 NQTDIYFCKI 93 (115)
T ss_pred HHCeEEEEEe
Confidence 9999999975
No 368
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.29 E-value=0.014 Score=56.33 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=48.0
Q ss_pred CCcceEEeCCCeEEEEEEEeee-cC-CceEEEECCeeccCCCe---EEEEEcCcEE----EEEEeeeccCC-CeEEEEEE
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGT-PV-PKCRWLRNGREISSGAR---YRVETAGGVF----RLHFNEVTDVD-NGDYTCEA 165 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~---~~~~~~~~~~----~L~i~~~~~~d-~G~Y~C~a 165 (2245)
+|....+.+++.++|.|.+.|. |. ..|.|+|||..+..+.. ......++.+ .|.|......| .-.|+|.+
T Consensus 9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V 88 (115)
T cd05769 9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIV 88 (115)
T ss_pred CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEE
Confidence 3443444567889999999884 55 47999999998875421 1222222332 35554444334 56899999
Q ss_pred EcCcccce
Q psy7042 166 YNSVGFAH 173 (2245)
Q Consensus 166 ~n~~g~~~ 173 (2245)
........
T Consensus 89 ~H~g~~~~ 96 (115)
T cd05769 89 QFYGGTDT 96 (115)
T ss_pred EEeCCccc
Confidence 86554333
No 369
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.15 E-value=0.012 Score=48.75 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=42.0
Q ss_pred CCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEEEe
Q psy7042 197 EGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTINIT 274 (2245)
Q Consensus 197 ~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 274 (2245)
..+.|.|.|.+. ..|.|++ |..+.... ..+|-+.+...+-.|.|+|.+++ .+....|.|.
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 356799999762 4699999 65554322 22688889999999999999887 2334445554
No 370
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.09 E-value=1.4 Score=50.73 Aligned_cols=204 Identities=13% Similarity=0.105 Sum_probs=104.6
Q ss_pred ceeecCCcccCceEEEEEEeecCCCCCCCCCCCCcEEecCCcccCCCceeccccccccccccceeeEEEEeccCc---Ce
Q psy7042 435 SQINIPNLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPK---PT 511 (2245)
Q Consensus 435 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---~~ 511 (2245)
-.+.|.++...+.|.|++...+.............+ ....||.+... ..-+.+|++..-.|.+..+-+ ..
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~-----v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~Svr 279 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIR-----VCQRPASVDVL--APPVLSGENYKASCIVRHFYPPGSVY 279 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEE-----EEecCCCcccc--CCccccCCCceEEEEeeeecCCCceE
Confidence 458999999999998877776654433211111111 12355655443 334688999999999987433 36
Q ss_pred EEEEeCCeecCCCccEEEE---eeC---CeE--EEEEecccccCCceEEEEEEeCCCCCCcceeEeEecCCCCCCCCCcc
Q psy7042 512 ISWLKGSREITPSARHHIF---AEG---DTY--TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPKFNVPPRFR 583 (2245)
Q Consensus 512 v~W~~~~~~i~~~~~~~~~---~~~---~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~p~~~ 583 (2245)
++|+.||.++......... .++ ... +|.+.+...+..=..+|.+.=..+...... .-...|..-..|.+
T Consensus 280 lrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~I- 356 (490)
T PHA03271 280 VSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPRI- 356 (490)
T ss_pred EEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeee--ecccCCccccCCeE-
Confidence 9999999887653322111 111 122 333333222233378998874333221111 11122222222221
Q ss_pred cceEeeCCCeEEEEEeeeecC-CCeEEEEeCCeEeeccCe---EEEEecCCeEEEEEcC-CCCCc---CEEEEEEEE
Q psy7042 584 DTAYFDKGENVVVKIPFTGYP-KPKITWYRDNEVIESGGH---FHVETSERHAILTIRD-ASNVD---TAPYRVVAE 652 (2245)
Q Consensus 584 ~~~~~~~g~~~~l~C~~~g~p-~~~i~W~~~~~~~~~~~~---~~~~~~~~~~~l~i~~-~~~~d---~g~y~C~a~ 652 (2245)
.+.+..|.- .|.+.--| ...++|...+...+.... ......+..+...|.. +..+| --.|+|.+.
T Consensus 357 -Sv~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~ 429 (490)
T PHA03271 357 -SLAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLI 429 (490)
T ss_pred -EEEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEe
Confidence 233444443 36666555 348999987765432211 1111112223333443 33333 358999986
No 371
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.08 E-value=0.013 Score=55.78 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=42.6
Q ss_pred EEeCCCeEEEEEEEeee-cC-CceEEEECCeeccCCCeEE--EEEc---CcEE----EEEEeeeccCCCeEEEEEEEcCc
Q psy7042 101 VVPLGKLLTLQCEATGT-PV-PKCRWLRNGREISSGARYR--VETA---GGVF----RLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 101 ~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~l~~~~~~~--~~~~---~~~~----~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
.+..|+.++|.|.+.|. |. ..|.|+|||..+....... ...+ ++.+ .|.|..-...+...|+|.|....
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 34457899999999985 43 3579999999876432111 1111 2332 34443333345568999998643
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.04 E-value=0.0085 Score=49.36 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=36.1
Q ss_pred cCCCeEEEEEEEecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEc
Q psy7042 196 PEGDNTKVKIFYAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSN 260 (2245)
Q Consensus 196 ~~G~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 260 (2245)
..|.+|+|+|-..+. .|.|++|+..+..... .+.+.+-. ++.|.|+|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 469999999965422 3999999966544222 34444555 899999999864
No 373
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.98 E-value=0.027 Score=51.56 Aligned_cols=65 Identities=26% Similarity=0.532 Sum_probs=44.8
Q ss_pred cCccEEEEEEEEee-CCC-eEEEeeCCEeeCCCCcEEE-E--EeCcEE---EEEEcCCCCCCCeEEEEEEEeCCce
Q psy7042 2101 QNHNAQFQCTITGC-PKP-TISWLKGSREITPSARHHI-F--AEGDTY---TLIINSVYGVDADEYVCRAVNKGGV 2168 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~-P~p-~i~W~~~g~~l~~~~~~~~-~--~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~ 2168 (2245)
.++.++|.|.+.|+ |.. .|+|+++|+.+........ . .+|... .|.+. ..+...|+|++.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 48899999999985 544 5999999998876543221 2 234332 35555 55666899999987543
No 374
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.96 E-value=0.03 Score=52.40 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCcceEEeCCCeEEEEEEEeee--cC-CceEEEECCeeccC-CCeEEEEEcCcEE----EEEEeeeccCCCeEEEEEEEc
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGT--PV-PKCRWLRNGREISS-GARYRVETAGGVF----RLHFNEVTDVDNGDYTCEAYN 167 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~--p~-~~i~W~~~g~~l~~-~~~~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~a~n 167 (2245)
+|....+..|+.++|.|.+.|. |. ..|.|.|||..... .........++.+ .|.+..-..++.-.|+|.|..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 4444456679999999999988 43 46899998753321 1111111222222 233333222234479999986
Q ss_pred Cc
Q psy7042 168 SV 169 (2245)
Q Consensus 168 ~~ 169 (2245)
..
T Consensus 85 ~~ 86 (96)
T cd07696 85 PD 86 (96)
T ss_pred CC
Confidence 54
No 375
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.91 E-value=0.02 Score=54.45 Aligned_cols=68 Identities=12% Similarity=0.303 Sum_probs=41.8
Q ss_pred eecCccEEEEEEEEeeCCC--eEEEeeCCEeeCCCCc--EEEEE----eCcEE---EEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2099 AIQNHNAQFQCTITGCPKP--TISWLKGSREITPSAR--HHIFA----EGDTY---TLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g~P~p--~i~W~~~g~~l~~~~~--~~~~~----~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
+..|+.++|.|.+.|+-++ .++|+|||+.+..... ..... +|... .|.|..-.-.+...|+|++....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 4457889999999996333 4799999998764321 11111 23322 35543222235567999998754
No 376
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.91 E-value=0.042 Score=51.05 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=42.7
Q ss_pred ccEEEEEEEE-eeCCCeEEEeeCCEeeCCCCcEEEEEeCc---EEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEE
Q psy7042 2103 HNAQFQCTIT-GCPKPTISWLKGSREITPSARHHIFAEGD---TYTLIINSVYGVDADEYVCRAVNKGGVKSTKAEL 2175 (2245)
Q Consensus 2103 ~~v~l~C~~~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 2175 (2245)
....+.|.+. |.|.+.|+|+++...... .......+|. .+.|.+.--...|.-.|+|+|.|.+-.....+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4578999876 889999999997211110 0111122333 2356664444445566999999987554444333
No 377
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.87 E-value=0.027 Score=52.37 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=39.4
Q ss_pred EeCCCeEEEEEEEeee-c-CCceEEEECCeeccCCCeE-EEEEcCcEEEE-EEeeeccCCCe-EEEEEEEcC
Q psy7042 102 VPLGKLLTLQCEATGT-P-VPKCRWLRNGREISSGARY-RVETAGGVFRL-HFNEVTDVDNG-DYTCEAYNS 168 (2245)
Q Consensus 102 v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~l~~~~~~-~~~~~~~~~~L-~i~~~~~~d~G-~Y~C~a~n~ 168 (2245)
...++.++|.|.+.|. | ..+|.|.|||..+..+... ....+++.+.+ .-..++.++.| .|+|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEEC
Confidence 3446789999999984 5 3468999999987643221 12222333211 11123343234 599999863
No 378
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.79 E-value=0.044 Score=51.31 Aligned_cols=73 Identities=5% Similarity=-0.010 Sum_probs=41.9
Q ss_pred CCceEEcCCCeEEEEEEEecC--C-CceEEEeeCceeee-cCCceEE-EEeCCe---EEEEEcccCccCceeEEEEEEcC
Q psy7042 190 PNALYIPEGDNTKVKIFYAGD--Q-PMEVSLTKNGRVVQ-SDDRFKF-TVLDDY---IIIFIKEIRKEDAGDYTVNLSNS 261 (2245)
Q Consensus 190 ~~~~~v~~G~~~~l~C~~~g~--p-~~~i~W~~~g~~l~-~~~~~~~-~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~ 261 (2245)
|....+..|+.++|.|.+.|. | ...++|.|||.... ....... ..++.. +.|.+..-..++.-.|+|.+.+.
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 444456678999999999988 4 45789999875332 1111001 111111 23444433223344899999876
Q ss_pred C
Q psy7042 262 S 262 (2245)
Q Consensus 262 ~ 262 (2245)
.
T Consensus 86 ~ 86 (96)
T cd07696 86 D 86 (96)
T ss_pred C
Confidence 4
No 379
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.75 E-value=0.065 Score=49.80 Aligned_cols=69 Identities=10% Similarity=0.196 Sum_probs=43.1
Q ss_pred CeEEEEEEEe-eecCCceEEEECCeeccCCCeEEEEEcCc---EEEEEEeeeccCCCeEEEEEEEcCcccceeE
Q psy7042 106 KLLTLQCEAT-GTPVPKCRWLRNGREISSGARYRVETAGG---VFRLHFNEVTDVDNGDYTCEAYNSVGFAHTS 175 (2245)
Q Consensus 106 ~~v~L~C~~~-g~p~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 175 (2245)
..+.+.|.+. |.|.++|.|+++..... ........++. ...|.+.....+|...|+|+|.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 4578999885 78999999999821111 00111112222 2357776667777778999999876443333
No 380
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.68 E-value=0.24 Score=57.32 Aligned_cols=79 Identities=22% Similarity=0.170 Sum_probs=62.4
Q ss_pred EEEEEeeeccCCCeEEEEEEEcCcccc--eeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEec-CC--CceEEEeeC
Q psy7042 146 FRLHFNEVTDVDNGDYTCEAYNSVGFA--HTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAG-DQ--PMEVSLTKN 220 (2245)
Q Consensus 146 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g-~p--~~~i~W~~~ 220 (2245)
..|.|..++...+|.|+=...+..+.. ...++|+...+|.+...+.. +.+|+...-.|.+.. +| ...+.||+|
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 359999999999999999977766533 34566777889988777654 468999999999876 45 347899999
Q ss_pred ceeeec
Q psy7042 221 GRVVQS 226 (2245)
Q Consensus 221 g~~l~~ 226 (2245)
|.++..
T Consensus 260 g~~V~~ 265 (466)
T PHA03270 260 GDEVFA 265 (466)
T ss_pred CccccC
Confidence 998854
No 381
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.67 E-value=0.059 Score=52.12 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=49.3
Q ss_pred ceeeecCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCcE---EEEEe-CcE---EEEEEcCCCCCC-CeEEEEEEEeC
Q psy7042 2096 NANAIQNHNAQFQCTITGC-PK-PTISWLKGSREITPSARH---HIFAE-GDT---YTLIINSVYGVD-ADEYVCRAVNK 2165 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~~---~~~~~-~~~---~~L~i~~v~~~d-~G~Y~C~a~N~ 2165 (2245)
.....+++.++|.|.+.|+ |. ..|+|+|||+.+..+... ....+ +.. +.|.|..-.-.| .-.|+|.+...
T Consensus 12 ~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~ 91 (115)
T cd05769 12 EAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFY 91 (115)
T ss_pred hHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEe
Confidence 3344467789999999985 65 379999999988754311 11111 222 235555333223 56799999987
Q ss_pred CceeeEEEE
Q psy7042 2166 GGVKSTKAE 2174 (2245)
Q Consensus 2166 ~G~~~~~~~ 2174 (2245)
.......+.
T Consensus 92 g~~~~~~~~ 100 (115)
T cd05769 92 GGTDTDKWQ 100 (115)
T ss_pred CCccceeee
Confidence 666654444
No 382
>PHA02982 hypothetical protein; Provisional
Probab=95.66 E-value=0.08 Score=54.10 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=79.0
Q ss_pred ceEEeCCCeEEEEEEEe-eecCCceEEEECCe-ecc----------C--------CCeEEEEEcCcEEEEEEeeeccCCC
Q psy7042 99 DLVVPLGKLLTLQCEAT-GTPVPKCRWLRNGR-EIS----------S--------GARYRVETAGGVFRLHFNEVTDVDN 158 (2245)
Q Consensus 99 ~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~-~l~----------~--------~~~~~~~~~~~~~~L~i~~~~~~d~ 158 (2245)
++.+..|+.|.|.|... +.-..+..|++++. .|. . ...|.++-++..++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 45677899999999963 23345689988542 222 1 2356777888888999999999999
Q ss_pred eEEEEEEEcCccccee-EEEEEecCCCeeecCCCceEEcCCCe-EEEEEEEecCCCceEEEeeCcee
Q psy7042 159 GDYTCEAYNSVGFAHT-SSRVKIGTPPRIDRMPNALYIPEGDN-TKVKIFYAGDQPMEVSLTKNGRV 223 (2245)
Q Consensus 159 G~Y~C~a~n~~g~~~~-~~~l~V~~~P~~~~~~~~~~v~~G~~-~~l~C~~~g~p~~~i~W~~~g~~ 223 (2245)
|=|+|+|....+..+. .-=|.|+..-.+ ..+.++.+ ..+.|-+.+.-.+-..|.-+|..
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDIL------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEE------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999987665444 333555332111 12334444 46789986654433488877764
No 383
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=95.61 E-value=0.34 Score=54.51 Aligned_cols=298 Identities=15% Similarity=0.149 Sum_probs=147.5
Q ss_pred eeceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCC--CCCCCCCCCCeeEeecCCeEEEEecC-CCCCCCCc
Q psy7042 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHP--FDVPGAPGAPKGVDSTEDSISLVWSK-PRHDGGSP 1032 (2245)
Q Consensus 956 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~--~~~p~~p~~~~~~~~~~~~v~l~W~~-p~~~~~~~ 1032 (2245)
..+++....|.+...|.|..-..+..-.+.. ++.+...+. ...+..+..+ .-+..+.+-|.| |..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~~~~i~~~~~~~~~~----~~~~~~~~~w~~~~d~~---- 97 (343)
T COG3401 29 YQTHYYDEGLEGEESYPYQEGTTKVDKISYD---SERILVKTSFIERVRSVFASL----ERPKSVKVFWSPHPDVS---- 97 (343)
T ss_pred hhhhhhhccccccCcceeeecccccceeeec---CcceEEEeeeccccccccchh----cCcceeeecccccCCCC----
Confidence 3445666777777777776655554422211 233333332 1222222222 234558999998 5433
Q ss_pred cceEEEEEEecCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEe
Q psy7042 1033 IQRYIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVN 1112 (2245)
Q Consensus 1033 i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n 1112 (2245)
..+|.|+....++. ..+.... +|+ ... .+.-.+|.++..|.+.+.|.+
T Consensus 98 ~~~Y~i~~~~gD~~-f~r~~~~-------------~n~--------l~~----------~~i~s~~~~~~~~~~~Iia~~ 145 (343)
T COG3401 98 VGKYIIQRQNGDGK-FLRTGLV-------------KNR--------LFV----------EFIDSDLGHNEKYMELIIAAD 145 (343)
T ss_pred CCeEEEEEecCchh-hhhhhHH-------------Hhc--------cch----------hheecccccccceeeeEEeec
Confidence 56798887643322 2111000 000 000 012558899999999999999
Q ss_pred cCCCCCCCCCCcceeecCCCCCCccccCCCceeEEEEcCCeEEEEEEeeecCCCcceEEeCCeecCCCCcEEEEEccceE
Q psy7042 1113 AAGQGPWSSSSDIIMCCAPPCAPKITSDLSIRDMTVLAGEEFTITVPFSGRPKPTPIWTVNGDEVSPDGRIKFETSENQT 1192 (2245)
Q Consensus 1113 ~~G~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~~~~~~~l~~~~~~~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~ 1192 (2245)
..+.-..+ ..... ..+-..|+ ....+.+.......+.+.|.+.+... .++-...-....++.+.......
T Consensus 146 f~~~~sfs--f~gVE-~~~~~~P~-----ei~~~~~~~d~~~~i~ls~dg~~~~~--yy~IY~~~~g~e~~~~ia~t~~n 215 (343)
T COG3401 146 FQMGKSFS--FTGVE-ATPKAEPK-----EITNVRVSFDLGNNIELSEDGSEAED--YYRIYASDSGNEEYGFIAQTTEN 215 (343)
T ss_pred ccccceee--eeeee-cccccCCc-----eeeeeeeecCCCCcceeeccCccccc--eEEEeccCCccccccceeecccc
Confidence 88764444 11111 11222221 22445555555666777787766554 22211111122222222222222
Q ss_pred EEEecCccccccceeEEEEEEcCCc-ceeEEEEEEEEC---CCCCCCCCceeeeccCCcEEEEecCCCCCCCcceeeeEE
Q psy7042 1193 IYRNKSAKRATDSGSYTIQLVNTVG-SDSASCKVYVVD---KPSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVV 1268 (2245)
Q Consensus 1193 ~~~~~~~~~~~~~~~Y~~~a~n~~g-~~~~s~~~~v~~---~p~~p~~~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v 1268 (2245)
.+.... +.+.....|.+++....| .+..+....+.. .+..|..+.... ....+.+.|+..+... ...|.+
T Consensus 216 ~y~d~~-eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~--~~s~i~V~~E~~~~~~---av~ytv 289 (343)
T COG3401 216 SYYDVK-EGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETT--EASFIGVAAEQNQLRQ---AVTYTV 289 (343)
T ss_pred chhhhh-hccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCcee--eeeeeeEEecccccce---eeEEee
Confidence 222222 224566677887766444 443343333321 222221111111 1233457776532222 345555
Q ss_pred EEeeccccceEEcccceecceEEecCCCCCceEEEEEEEeccccCCC
Q psy7042 1269 EKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSE 1315 (2245)
Q Consensus 1269 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~ 1315 (2245)
..... +... .........+.+..+..+..|.|.|.+.+.+|-+.
T Consensus 290 yr~~~--g~~~-~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 290 YRVED--GTPT-KFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred eeccC--CCcc-eeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 32222 1111 11344566778888999999999999999999765
No 384
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.48 E-value=0.082 Score=49.26 Aligned_cols=64 Identities=13% Similarity=0.296 Sum_probs=40.0
Q ss_pred eecCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCc-EEEEEeCcEE----EEEEcCCCCC-CCeEEEEEEEeC
Q psy7042 2099 AIQNHNAQFQCTITGC-PK-PTISWLKGSREITPSAR-HHIFAEGDTY----TLIINSVYGV-DADEYVCRAVNK 2165 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~~~~~~~~~~----~L~i~~v~~~-d~G~Y~C~a~N~ 2165 (2245)
...+..++|.|.|.|+ |. ..++|.|||..+..+.. .....+++.+ .|++. .+ ....|+|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt---~~~~~~~ysC~V~H~ 84 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT---KDSLGKKFRCIYKHE 84 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC---chhCCCeEEEEEEEC
Confidence 4446789999999985 54 34899999998765431 1222333332 24433 33 234499999874
No 385
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.48 E-value=0.041 Score=50.79 Aligned_cols=72 Identities=14% Similarity=0.043 Sum_probs=46.8
Q ss_pred CceEEcCCCeEEE-EEEE-ecCCCceEEEeeCceeeecCCceEEEEeC---CeEEEEEcccCccCceeEEEEEEcCCc
Q psy7042 191 NALYIPEGDNTKV-KIFY-AGDQPMEVSLTKNGRVVQSDDRFKFTVLD---DYIIIFIKEIRKEDAGDYTVNLSNSSG 263 (2245)
Q Consensus 191 ~~~~v~~G~~~~l-~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g 263 (2245)
....+.+|+.+.+ .|.+ .|.|+++|+|+.+..-... ........+ -.+.|.+...+.+|.-.++|++.+..-
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 3456788999999 9996 5799999999986322210 000000011 123577766667777799999998753
No 386
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.47 E-value=0.71 Score=54.27 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=61.4
Q ss_pred EEEEEEeeeccCCCeEEEEEEEcC---cccceeEEEEEecCCCeeecCCCceEEcCCCeEEEEEEEec-CC--CceEEEe
Q psy7042 145 VFRLHFNEVTDVDNGDYTCEAYNS---VGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNTKVKIFYAG-DQ--PMEVSLT 218 (2245)
Q Consensus 145 ~~~L~i~~~~~~d~G~Y~C~a~n~---~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g-~p--~~~i~W~ 218 (2245)
.+-|.|.+++..++|.|.=.+.+. .......++|++..+|.+...+.. +.+|+...-.|.+.. +| ...+.||
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf 365 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWT 365 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEE
Confidence 356999999999999998776532 223445677888889987776654 468999999999876 45 3478999
Q ss_pred eCceeeec
Q psy7042 219 KNGRVVQS 226 (2245)
Q Consensus 219 ~~g~~l~~ 226 (2245)
+||.++..
T Consensus 366 ~ng~~V~~ 373 (566)
T PHA03269 366 SNFGNIGK 373 (566)
T ss_pred eCCcccCc
Confidence 99998874
No 387
>PHA02633 hypothetical protein; Provisional
Probab=95.46 E-value=0.029 Score=45.14 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=33.2
Q ss_pred EEEEeeeccCCCeEEEEEEEcCcccceeEEEEEecCC
Q psy7042 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTP 183 (2245)
Q Consensus 147 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 183 (2245)
.|.|.++..+|+|.|.|+..|..-....++.|+|...
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 4999999999999999999999888888998888654
No 388
>KOG4597|consensus
Probab=95.44 E-value=0.034 Score=64.26 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=81.1
Q ss_pred EEEEEEEeccccCCCcCCCCcccccCcccCCCceEEeeccceeeecCccEEEEEEEEeeCCCeEEEee---CCEeeCCCC
Q psy7042 2056 EFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCPKPTISWLK---GSREITPSA 2132 (2245)
Q Consensus 2056 ~y~c~a~n~~g~~~~~~~s~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~---~g~~l~~~~ 2132 (2245)
.++|+-...-+...+.-...+.... +...+.|.+...+..+.+-.|+++.++|.+.|.|.+.|.|.+ |++.+.+..
T Consensus 166 iv~C~~~~t~~~~~~~~cettm~pt-pe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~ 244 (560)
T KOG4597|consen 166 IVYCIHGKTWPRVSPDPCETTMAPT-PEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRP 244 (560)
T ss_pred eEEEeccccCCCCCCCccccccCCC-CCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecC
Confidence 4566655544443333333232222 111222566666677788899999999999999999999987 444333222
Q ss_pred cEEE--EEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEE
Q psy7042 2133 RHHI--FAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2133 ~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 2178 (2245)
...+ -..-....|.|-+....|+|.|+|.|.|.+|...+.+.+.+.
T Consensus 245 nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 245 NQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 1111 011223469999999999999999999999999999988775
No 389
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.34 E-value=0.038 Score=45.94 Aligned_cols=61 Identities=16% Similarity=0.363 Sum_probs=42.6
Q ss_pred CCCeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEEEecC
Q psy7042 104 LGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGT 182 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 182 (2245)
..+.|.|+|.+. -+|.|++ |..+.... ..+|.+.....+=.|.|+|.+++ ...+..|.|.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 456899999762 3599999 66554321 22588888899999999999977 23445555543
No 390
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.28 E-value=0.09 Score=49.14 Aligned_cols=65 Identities=18% Similarity=0.397 Sum_probs=38.8
Q ss_pred cCccEEEEEEEEee-CC-CeEEEeeCCEeeCCCCc-E-EEEE-eCcEE---EEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2101 QNHNAQFQCTITGC-PK-PTISWLKGSREITPSAR-H-HIFA-EGDTY---TLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2101 ~g~~v~l~C~~~g~-P~-p~i~W~~~g~~l~~~~~-~-~~~~-~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
.++.++|.|.+.|+ |. .+|+|+|||+. ..+.. + .+.. +|... .|++..-.-...-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999985 44 45899999997 33321 0 1122 44333 24433221112556999998764
No 391
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.27 E-value=0.15 Score=46.76 Aligned_cols=67 Identities=27% Similarity=0.534 Sum_probs=44.3
Q ss_pred CCCeEEEEEEEeee-cCC-ceEEEECCeeccCCCeEEE-E-EcCcEEEE-EEeeeccCCCeEEEEEEEcCcc
Q psy7042 104 LGKLLTLQCEATGT-PVP-KCRWLRNGREISSGARYRV-E-TAGGVFRL-HFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 104 ~G~~v~L~C~~~g~-p~~-~i~W~~~g~~l~~~~~~~~-~-~~~~~~~L-~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
.++.++|.|.+.|. |.. .|.|+++|..+........ . ..++.+.+ ....+..++...|+|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEEECCC
Confidence 48999999999884 543 6999999999876543221 1 23444322 1223345666689999986543
No 392
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.18 E-value=0.12 Score=48.88 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=45.7
Q ss_pred ceeeecCccEEEEEEEEeeCCC---eEEEeeC--CE------------eeC-CCCcEEEE--EeCcEEEEEEcCCCCCCC
Q psy7042 2096 NANAIQNHNAQFQCTITGCPKP---TISWLKG--SR------------EIT-PSARHHIF--AEGDTYTLIINSVYGVDA 2155 (2245)
Q Consensus 2096 ~~~~~~g~~v~l~C~~~g~P~p---~i~W~~~--g~------------~l~-~~~~~~~~--~~~~~~~L~i~~v~~~d~ 2155 (2245)
...+..|..++|.|.+.|.-.. .+.|+|. |. ... ...++.+. ...+...|+|.+++.+|+
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 3456778899999999775444 4889883 21 010 12233333 335567899999999999
Q ss_pred eEEEEEE
Q psy7042 2156 DEYVCRA 2162 (2245)
Q Consensus 2156 G~Y~C~a 2162 (2245)
+.|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999954
No 393
>PHA02982 hypothetical protein; Provisional
Probab=95.10 E-value=0.12 Score=52.79 Aligned_cols=119 Identities=16% Similarity=0.287 Sum_probs=77.0
Q ss_pred CceEEcCCCeEEEEEEe-cCcCCCeEEEeeCCE-ecc----------C--------CceEEEEecCcEEEEEEeeeccCC
Q psy7042 1705 KDLVVPLGKLLTLQCEA-TGTPVPKCRWLRNGR-EIS----------S--------GARYRVETAGGVFRLHFNEVTDVD 1764 (2245)
Q Consensus 1705 ~~~~~~~G~~v~L~C~~-~~~p~~~v~W~~~~~-~l~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d 1764 (2245)
.++.+..|++|.|.|.. .+.......|+.+.. -|. . ...+.+..++..++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 34677889999999997 344445678987532 221 1 235677778889999999999999
Q ss_pred CeEEEEEEecCceeeEE-EEEEEecCCCccccCCCceEEcCC-CeEEEEEEEeccCCcEEEEEECCE
Q psy7042 1765 NGDYTCEAYNSVGFAHT-SSRVKIGTPPRIDRMPNALYIPEG-DNTKVKIFYAGDQPMEVSLTKNGR 1829 (2245)
Q Consensus 1765 ~G~Y~C~~~n~~g~~~~-~~~l~V~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~p~~~v~W~~~g~ 1829 (2245)
.|-|+|++....+..+. .--|.|+.-.. -....++ ....+.|-+-+.-.+...|.-+|-
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V------~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDI------LYVVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceE------EEEEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 99999999886654433 33333321111 1112233 346688987765443338887775
No 394
>PHA03273 envelope glycoprotein C; Provisional
Probab=94.92 E-value=0.27 Score=57.58 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=60.8
Q ss_pred EEEEEeeeccCCCeEEEEEEEcCcccceeEEE--EEecCCCeeecCCCceEEcCCCeEEEEEEEec-CC--CceEEEeeC
Q psy7042 146 FRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSR--VKIGTPPRIDRMPNALYIPEGDNTKVKIFYAG-DQ--PMEVSLTKN 220 (2245)
Q Consensus 146 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~--l~V~~~P~~~~~~~~~~v~~G~~~~l~C~~~g-~p--~~~i~W~~~ 220 (2245)
+.|+|..++..++|.|.=...+..|....... |....+|.+...+.. +.+|+...-.|.+.. +| ...+.||+|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 56999999999999999776666554444444 444788887777654 468999999999876 45 347899999
Q ss_pred ceeee
Q psy7042 221 GRVVQ 225 (2245)
Q Consensus 221 g~~l~ 225 (2245)
|.++.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 99986
No 395
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.92 E-value=0.092 Score=48.00 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=41.1
Q ss_pred EcCCCeEEEEEEEec-CCC--ceEEEeeCceeeecCCceEE----EEeCCeEEEEEcccCccCce-eEEEEEEc
Q psy7042 195 IPEGDNTKVKIFYAG-DQP--MEVSLTKNGRVVQSDDRFKF----TVLDDYIIIFIKEIRKEDAG-DYTVNLSN 260 (2245)
Q Consensus 195 v~~G~~~~l~C~~~g-~p~--~~i~W~~~g~~l~~~~~~~~----~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n 260 (2245)
+.+|..++++|.+.+ .|. ..+.|+|+...+.......- ........+.+... .+|.| +|+|+|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence 478999999999975 564 67999997766653321110 00112234555554 56666 99999873
No 396
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.81 E-value=0.12 Score=48.25 Aligned_cols=65 Identities=9% Similarity=0.145 Sum_probs=38.6
Q ss_pred CCCeEEEEEEEec-CC-CceEEEeeCceeeecCCc-e-EEEE-eCCe---EEEEEcccCccCceeEEEEEEcCC
Q psy7042 197 EGDNTKVKIFYAG-DQ-PMEVSLTKNGRVVQSDDR-F-KFTV-LDDY---IIIFIKEIRKEDAGDYTVNLSNSS 262 (2245)
Q Consensus 197 ~G~~~~l~C~~~g-~p-~~~i~W~~~g~~l~~~~~-~-~~~~-~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~ 262 (2245)
.++.++|.|.+.| +| ...++|+|||.. ..+.. . .+.. ++.. +.|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999998 45 557899999997 33211 0 1111 1211 234444322222557999999764
No 397
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=94.73 E-value=0.18 Score=46.74 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=45.8
Q ss_pred eEEeCCCeEEE-EEEE-eeecCCceEEEECCeeccCCCeEEEEEcCc---EEEEEEeeeccCCCeEEEEEEEcCcc
Q psy7042 100 LVVPLGKLLTL-QCEA-TGTPVPKCRWLRNGREISSGARYRVETAGG---VFRLHFNEVTDVDNGDYTCEAYNSVG 170 (2245)
Q Consensus 100 ~~v~~G~~v~L-~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g 170 (2245)
..+.+|+.+.| .|.+ .|.|+++|.|+.+..-.. ........+|. ..+|.+...+.+|.-.++|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 56788999999 9988 568999999998643221 11111111121 12466666677777789999987643
No 398
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.56 E-value=0.13 Score=47.05 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=41.8
Q ss_pred EeCCCeEEEEEEEee-ecC--CceEEEECCeeccCCCeEEEE-----EcCcEEEEEEeeeccCCCe-EEEEEEEcC
Q psy7042 102 VPLGKLLTLQCEATG-TPV--PKCRWLRNGREISSGARYRVE-----TAGGVFRLHFNEVTDVDNG-DYTCEAYNS 168 (2245)
Q Consensus 102 v~~G~~v~L~C~~~g-~p~--~~i~W~~~g~~l~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~ 168 (2245)
+.+|..++|.|.+.+ .|. ..|.|+|.+..+.... +.-. .......++|... .+|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 478999999999965 454 5699998776665332 1110 0112234666564 55666 899999843
No 399
>KOG4367|consensus
Probab=94.46 E-value=0.025 Score=63.47 Aligned_cols=74 Identities=30% Similarity=0.412 Sum_probs=62.6
Q ss_pred ccCCcEEEEecCCCCCCCcceeeeEEEEeeccccceEEcccceecceEEecCCCCCceEEEEEEEeccccCCCCcc
Q psy7042 1243 ITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEPLE 1318 (2245)
Q Consensus 1243 ~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~s~ 1318 (2245)
...++++|+|+.|.. .+.+..+|.++....++|.++++ ..+..+..++.+|..++.|.-+|.|+|..|.++.+.
T Consensus 450 t~nns~t~~wkqp~~-~~~~~dg~~leld~g~~g~frev-y~g~etmctvdglhfns~y~arvka~n~tg~s~ys~ 523 (699)
T KOG4367|consen 450 THNNSATLSWKQPPL-STVPADGYILELDDGNGGQFREV-YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 523 (699)
T ss_pred ccCCceEEEeecCCC-CCCCCcceEEEeecCCCCceeEE-EecCceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence 467899999996554 47779999999888888888776 456677899999999999999999999999998654
No 400
>KOG4228|consensus
Probab=94.27 E-value=0.16 Score=66.48 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=69.2
Q ss_pred EEEEEEEeCCCCceeEEEEEeeCCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEceeeee
Q psy7042 646 PYRVVAENDLGMDSAIVKIQISDRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGNTRFT 725 (2245)
Q Consensus 646 ~y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~~~~~ 725 (2245)
.|+|.+....|.....+.+.|..-|..+..+.+.....++..++|..... ....|.+.++..... ..-.......
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~~~~~ 75 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDVDLTT 75 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeecccee
Confidence 49999999999999999999988888888888888888999999985321 445566666654443 3222333334
Q ss_pred eEEEecCCCCCEEEEEEEEEecccCCCCCC
Q psy7042 726 TMAITGLSPGHQYEFRVYAENVYGRSDPST 755 (2245)
Q Consensus 726 ~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~ 755 (2245)
.+....+.+...+.+ .++|..|.+.++.
T Consensus 76 ~~s~~~~~~~~~~~~--~evnt~~~a~~~~ 103 (1087)
T KOG4228|consen 76 RLSYPCLSPPSFLEL--VEVNTIGRAPFQC 103 (1087)
T ss_pred ecccCCCCCcchhhh--hhccccccccccc
Confidence 455555566666555 5566666554443
No 401
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.13 E-value=14 Score=42.70 Aligned_cols=121 Identities=17% Similarity=0.281 Sum_probs=74.4
Q ss_pred CceEEcCCCeEEEEEEecC--c-CCCeEEEeeCCEeccC-----------------CceEEEEe------cCcEEEEEEe
Q psy7042 1705 KDLVVPLGKLLTLQCEATG--T-PVPKCRWLRNGREISS-----------------GARYRVET------AGGVFRLHFN 1758 (2245)
Q Consensus 1705 ~~~~~~~G~~v~L~C~~~~--~-p~~~v~W~~~~~~l~~-----------------~~~~~~~~------~~~~~~L~i~ 1758 (2245)
....+..|..|.|.|.+.. + ......|+--|-++.+ ...+.+.. +-..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 4577888999999999853 2 3346899876654431 12222221 1235679999
Q ss_pred eeccCCCeEEEEEEecCceeeEEEEEEEecCCCccccCCCceEEcC-CCeEEEEEEEecc--CCcEEEEEECCEEe
Q psy7042 1759 EVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPE-GDNTKVKIFYAGD--QPMEVSLTKNGRVV 1831 (2245)
Q Consensus 1759 ~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~--p~~~v~W~~~g~~l 1831 (2245)
++..+..|-|+|+|..+.-..+..--|.|...-.+ .+ ..+ .....+.|-+... .++++.|.-+|-..
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f-----~W-~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFF-----KW-NTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccEEEE-----EE-EeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 99999999999999876433333322333211011 01 123 3345688977664 56789999888654
No 402
>KOG4152|consensus
Probab=93.90 E-value=0.16 Score=59.05 Aligned_cols=76 Identities=30% Similarity=0.423 Sum_probs=55.5
Q ss_pred EEecCCCCceeeEEEEEEeccccCCCccccCcccccC-CCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEE
Q psy7042 961 RVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKH-PFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVE 1039 (2245)
Q Consensus 961 ~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t-~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~ 1039 (2245)
.-..|-+|+.|.|+|.|.|..|.++++..+. ++| ....|.+|+..++.. +-..+.+.|+||..++.+.|..|...
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~---~kTc~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~y 725 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILK---LKTCAPGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPY 725 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhhee---eeeccCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehh
Confidence 3457889999999999999999999985443 322 346666777666542 33568899999998876667666655
Q ss_pred E
Q psy7042 1040 K 1040 (2245)
Q Consensus 1040 ~ 1040 (2245)
.
T Consensus 726 l 726 (830)
T KOG4152|consen 726 L 726 (830)
T ss_pred h
Confidence 4
No 403
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=93.65 E-value=2.4 Score=48.04 Aligned_cols=119 Identities=11% Similarity=0.126 Sum_probs=74.1
Q ss_pred CceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecceee--eceEEEecCCCCceeeEEEEEEeccccCCCccccCc
Q psy7042 915 GDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVT--TPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDP 992 (2245)
Q Consensus 915 ~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~~--~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~ 992 (2245)
+..+.+-|.+..+. +...|.|+......- +.+.....+ ...+.-.+|.++..|.+.|.|.+..+.-..+ + .
T Consensus 83 ~~~~~~~w~~~~d~---~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs--f-~ 155 (343)
T COG3401 83 PKSVKVFWSPHPDV---SVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS--F-T 155 (343)
T ss_pred cceeeecccccCCC---CCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee--e-e
Confidence 45589999986553 567899987753322 332222211 2234456899999999999999877753333 1 1
Q ss_pred ccccCCCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEEEecCC
Q psy7042 993 IKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEKRLISD 1045 (2245)
Q Consensus 993 ~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~~~~~~ 1045 (2245)
..-.++...|..-..+++...-.+.+.|+|+-++.. .+|.|.-...++
T Consensus 156 gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~g~ 203 (343)
T COG3401 156 GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDSGN 203 (343)
T ss_pred eeecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCCcc
Confidence 222234455544455566666778999999976643 478886554443
No 404
>KOG4367|consensus
Probab=93.38 E-value=0.064 Score=60.39 Aligned_cols=75 Identities=28% Similarity=0.313 Sum_probs=63.1
Q ss_pred eeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecceeeeceEEEecCCCCceeeEEEEEEeccccCCCcc
Q psy7042 912 EFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAENQYGLSKPAL 988 (2245)
Q Consensus 912 ~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~ 988 (2245)
....++++|+|..|... +.+..+|.++....+++.+.++... ..+..++++|.-++.|.-+|.|.|..|.++.+.
T Consensus 449 ~t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~g-~etmctvdglhfns~y~arvka~n~tg~s~ys~ 523 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVG-KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 523 (699)
T ss_pred hccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEec-CceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence 35678999999965443 3589999999999888888777754 455889999999999999999999999998873
No 405
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=93.09 E-value=0.25 Score=48.09 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=46.6
Q ss_pred CCCeEEEEEEEec-----CCCceEEEeeCceeeec--CCceEEE---------E--eCCeEEEEEcccCccCceeEEEEE
Q psy7042 197 EGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQS--DDRFKFT---------V--LDDYIIIFIKEIRKEDAGDYTVNL 258 (2245)
Q Consensus 197 ~G~~~~l~C~~~g-----~p~~~i~W~~~g~~l~~--~~~~~~~---------~--~~~~~~L~i~~~~~~d~G~Y~C~a 258 (2245)
=.++|.|.|.+.. -+...|.|.++|..+-. +...... . ..+...|.+.....- .|+|+|++
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 4788999999864 23457999998887642 1111110 0 022334777765444 89999999
Q ss_pred EcCCcceEEEEEEEEe
Q psy7042 259 SNSSGSVSGTFTINIT 274 (2245)
Q Consensus 259 ~n~~g~~~~~~~l~V~ 274 (2245)
.....+....+.|...
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9988888888888764
No 406
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.06 E-value=0.13 Score=47.82 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=41.2
Q ss_pred CCcceEEeCCCeEEEEEEEeee--c-CCceEEEECCeeccCCCeEEEEEcCcE----EEEEEeeeccCCCe-EEEEEEEc
Q psy7042 96 PLKDLVVPLGKLLTLQCEATGT--P-VPKCRWLRNGREISSGARYRVETAGGV----FRLHFNEVTDVDNG-DYTCEAYN 167 (2245)
Q Consensus 96 ~~~~~~v~~G~~v~L~C~~~g~--p-~~~i~W~~~g~~l~~~~~~~~~~~~~~----~~L~i~~~~~~d~G-~Y~C~a~n 167 (2245)
+|.......+..++|.|.+.|. | ...|.|.++|.. ...........++. ..|.+.. ....+| .|+|.|..
T Consensus 10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~-~~W~~g~~ytC~V~H 87 (99)
T cd04986 10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCA-EEWNKGEPFACTVTH 87 (99)
T ss_pred CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCH-HHhcCCCeEEEEEEC
Confidence 3444445568999999999883 4 357999999875 21000011111222 1344432 223344 59999987
Q ss_pred Cc
Q psy7042 168 SV 169 (2245)
Q Consensus 168 ~~ 169 (2245)
..
T Consensus 88 ~~ 89 (99)
T cd04986 88 PE 89 (99)
T ss_pred CC
Confidence 54
No 407
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=92.85 E-value=0.58 Score=45.33 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=61.9
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEe--cceeeeceEEEecCC--CCceeeEEE
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKV--SSYVTTPFVRVRNLA--IGSTYEFRV 975 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~--~~~~~~~~~~i~~L~--p~~~y~~~v 975 (2245)
+...+|.|+++... +-...|.|+++.... .-..|.|+++......|..+ ......+...+++.. +...|.++|
T Consensus 20 ~~lp~P~nv~~~s~-nf~~iL~W~~~~~~~--~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 20 ASLPAPQNVTVDSV-NFKHILRWDPGPGSP--PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SSGSSCEEEEEEEE-TTEEEEEEEESTTSS--STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred ccCCCCCeeEEEEE-CCceEEEeCCCCCCC--CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 45668899999876 444689999954322 55789999997788899988 455666788887744 788999999
Q ss_pred EEEeccccC
Q psy7042 976 MAENQYGLS 984 (2245)
Q Consensus 976 ~a~n~~g~~ 984 (2245)
+|.-+...|
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 998766543
No 408
>PHA02633 hypothetical protein; Provisional
Probab=92.80 E-value=0.34 Score=39.35 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=33.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEEEcCCC
Q psy7042 2144 TLIINSVYGVDADEYVCRAVNKGGVKSTKAELIIMTAPK 2182 (2245)
Q Consensus 2144 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~p~ 2182 (2245)
.|-|-.+..+|+|.|.|+..|..=....++.|+|.....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence 688888999999999999999888888889999976543
No 409
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=92.72 E-value=0.18 Score=48.96 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=47.9
Q ss_pred eecCccEEEEEEEEe-----eCCCeEEEeeCCEeeCC--CCcEEEE---------Ee--CcEEEEEEcCCCCCCCeEEEE
Q psy7042 2099 AIQNHNAQFQCTITG-----CPKPTISWLKGSREITP--SARHHIF---------AE--GDTYTLIINSVYGVDADEYVC 2160 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g-----~P~p~i~W~~~g~~l~~--~~~~~~~---------~~--~~~~~L~i~~v~~~d~G~Y~C 2160 (2245)
..-.++|.|.|.+.. .+.-.|+|.++|..+.. +...... .+ .+.++|.+...+.- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 345899999999964 23344999999876531 1100000 00 12245777775544 899999
Q ss_pred EEEeCCceeeEEEEEEEE
Q psy7042 2161 RAVNKGGVKSTKAELIIM 2178 (2245)
Q Consensus 2161 ~a~N~~G~~~~~~~l~V~ 2178 (2245)
++.+...+.+..+.|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999999999999999874
No 410
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=92.47 E-value=0.38 Score=44.94 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccceeeecCccEEEEEEEEee--CC-CeEEEeeCCEeeCCCC-c-EEEEEeCcEE---EEEEcCCCCCCCeE-EEEEEEe
Q psy7042 2094 LRNANAIQNHNAQFQCTITGC--PK-PTISWLKGSREITPSA-R-HHIFAEGDTY---TLIINSVYGVDADE-YVCRAVN 2164 (2245)
Q Consensus 2094 ~~~~~~~~g~~v~l~C~~~g~--P~-p~i~W~~~g~~l~~~~-~-~~~~~~~~~~---~L~i~~v~~~d~G~-Y~C~a~N 2164 (2245)
|.......+..++|.|.+.|+ |. ..|+|.+||+. .+. . -....++... .|.+. .+.-..|. |+|.+.+
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~-~~~W~~g~~ytC~V~H 87 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGC-AEEWNKGEPFACTVTH 87 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeC-HHHhcCCCeEEEEEEC
Confidence 333345578899999999984 43 45999999875 111 0 0111234332 34443 22223444 9999988
Q ss_pred CCc
Q psy7042 2165 KGG 2167 (2245)
Q Consensus 2165 ~~G 2167 (2245)
...
T Consensus 88 ~~l 90 (99)
T cd04986 88 PEG 90 (99)
T ss_pred CCc
Confidence 654
No 411
>KOG4152|consensus
Probab=92.33 E-value=0.4 Score=56.03 Aligned_cols=36 Identities=39% Similarity=0.385 Sum_probs=28.5
Q ss_pred eEEEecCCCCCEEEEEEEEEecccCCCCCCCCccEE
Q psy7042 726 TMAITGLSPGHQYEFRVYAENVYGRSDPSTTSDLIT 761 (2245)
Q Consensus 726 ~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~~~~~~~ 761 (2245)
...-..|-+|+.|.|||.|.|..|.+..|..+.+.+
T Consensus 648 ~~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kT 683 (830)
T KOG4152|consen 648 KPVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKT 683 (830)
T ss_pred cccccccccccceeeeeeeeeccCCCchhhheeeee
Confidence 344456889999999999999999998887655443
No 412
>KOG3632|consensus
Probab=92.08 E-value=0.56 Score=59.65 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=84.1
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecceeeeceEEEecCCCCceeeEEEEEEe
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTYEFRVMAEN 979 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n 979 (2245)
..|..|.++++..++.++..++|-+-.... . -.|.....+.. ........+++.+|.|++.|..+|.|.-
T Consensus 670 ~a~vvpsqlrv~n~tqtSa~itwvp~nsn~----~-Hviyln~eE~~-----ps~a~~y~ytf~~lrpgt~y~a~vea~~ 739 (1335)
T KOG3632|consen 670 AAPVVPSQLRVWNATQTSAMITWVPFNSNF----L-HVIYLNAEEPR-----PSVAEMYNYTFMRLRPGTDYWASVEAAL 739 (1335)
T ss_pred cccccchhhhhhhhhchhhheeeeecCCCc----c-eeeecCCccCC-----CchhhhhHHHHhccCCCCccceeccccc
Confidence 466789999999999999999998743211 1 11211111100 1112344578999999999999999876
Q ss_pred c-ccc-----CCCccccCcccccCC-CCCCCCCCCCeeE-eecCCeEEEEecCCCC-----CCCCccceEEEEEE
Q psy7042 980 Q-YGL-----SKPALTIDPIKAKHP-FDVPGAPGAPKGV-DSTEDSISLVWSKPRH-----DGGSPIQRYIVEKR 1041 (2245)
Q Consensus 980 ~-~g~-----~~~s~~~~~~~~~t~-~~~p~~p~~~~~~-~~~~~~v~l~W~~p~~-----~~~~~i~~y~v~~~ 1041 (2245)
. .+. -..+.....+.+.|. ...|.+|.++++. ..++..+.++|.||.. .||..+++|.|...
T Consensus 740 p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyad 814 (1335)
T KOG3632|consen 740 PRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD 814 (1335)
T ss_pred CcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeC
Confidence 4 221 111222234444444 4555588888886 4668999999999753 45666788888654
No 413
>KOG4597|consensus
Probab=91.69 E-value=0.3 Score=56.85 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=65.6
Q ss_pred CceecCCcceEEeCCCeEEEEEEEeeecCCceEEEE---CCeecc--CCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEE
Q psy7042 91 PDFIVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLR---NGREIS--SGARYRVETAGGVFRLHFNEVTDVDNGDYTCEA 165 (2245)
Q Consensus 91 P~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~i~W~~---~g~~l~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 165 (2245)
|.+..-|....+-.|++..++|-+.|-|.+.|.|.+ |+..+. .+..+.--.-.....|.|-+....|+|.|+|.|
T Consensus 197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~ 276 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSA 276 (560)
T ss_pred cccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecc
Confidence 445556667788899999999999999999999965 443332 211111001112235999999999999999999
Q ss_pred EcCcccceeEEEEEe
Q psy7042 166 YNSVGFAHTSSRVKI 180 (2245)
Q Consensus 166 ~n~~g~~~~~~~l~V 180 (2245)
.+..|.....+.+.+
T Consensus 277 rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 277 RCGAGFLRRDVPCSS 291 (560)
T ss_pred ccccceeeccceeee
Confidence 999998888887665
No 414
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=90.13 E-value=11 Score=43.44 Aligned_cols=159 Identities=18% Similarity=0.255 Sum_probs=93.1
Q ss_pred CcceEEeCCCeEEEEEEEe--eec-CCceEEEECCeeccC-----------------CCeEEEEEc------CcEEEEEE
Q psy7042 97 LKDLVVPLGKLLTLQCEAT--GTP-VPKCRWLRNGREISS-----------------GARYRVETA------GGVFRLHF 150 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~--g~p-~~~i~W~~~g~~l~~-----------------~~~~~~~~~------~~~~~L~i 150 (2245)
..++.++.|..|.|.|..+ |+. ...+.|+-.|-++.+ ...|.+... -...+|+|
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 3456788899999999985 333 346899876655431 223444432 12358999
Q ss_pred eeeccCCCeEEEEEEEcCcccceeEEEEEecCCCeeecCCCceEEcCCCeE-EEEEEEecC--CCceEEEeeCceeeecC
Q psy7042 151 NEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRIDRMPNALYIPEGDNT-KVKIFYAGD--QPMEVSLTKNGRVVQSD 227 (2245)
Q Consensus 151 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~~-~l~C~~~g~--p~~~i~W~~~g~~l~~~ 227 (2245)
..+..+.+|=|.|+|....-......=|.|..--.+. ...+|++. ...|-+... .++.|.|.-+|......
T Consensus 351 kka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~ 424 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE 424 (500)
T ss_pred eeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccEEecCe
Confidence 9999999999999998764333333335444432221 22355554 568997654 36679999888765321
Q ss_pred Cce-------EEEEeCCeEEEEEcccCccC-ceeEEEEEEcC
Q psy7042 228 DRF-------KFTVLDDYIIIFIKEIRKED-AGDYTVNLSNS 261 (2245)
Q Consensus 228 ~~~-------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~ 261 (2245)
..- .+...-....+.|.+-...| --.-.|+.-..
T Consensus 425 ~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg 466 (500)
T PHA02914 425 IADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITG 466 (500)
T ss_pred ecCcccccccccccccceEEEEEecccCccccccceEEEecC
Confidence 110 00111112346666655555 44566765533
No 415
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=89.75 E-value=0.46 Score=51.63 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=42.2
Q ss_pred eCCCeEEEee-CCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCC
Q psy7042 2114 CPKPTISWLK-GSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKG 2166 (2245)
Q Consensus 2114 ~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 2166 (2245)
...|.+.|.- +|..|.......+...| .|.+.+....++|.|+|..+-..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 3679999997 56777777788888999 79999999999999999987543
No 416
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=89.62 E-value=0.42 Score=51.87 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=39.3
Q ss_pred cCCceEEEE-CCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcC
Q psy7042 118 PVPKCRWLR-NGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNS 168 (2245)
Q Consensus 118 p~~~i~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 168 (2245)
..|.+.|.. +|+.+....++.++..|. |.+.+...+++|.|+|..+-.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~---L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGK---LMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCce---EEeeccccccCCceEEEEEEE
Confidence 356799988 567777777788877774 999999999999999998753
No 417
>KOG1026|consensus
Probab=88.83 E-value=0.5 Score=60.48 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=105.3
Q ss_pred eEEeCCCeEEEEEEEeeecCCceEEEECCeeccCCCe-EEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCcccceeEEEE
Q psy7042 100 LVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGAR-YRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRV 178 (2245)
Q Consensus 100 ~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 178 (2245)
..+..|..+++.|.+.+.|.|.+.|+.++........ ..+.. + ....+.+ +.|.+.|..|....++.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~--~~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-S--ECEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-c--cceeeec--------hhhHHHHhhhhcCceeee
Confidence 4567899999999999999999999987766554321 11111 1 1122222 899999999999999999
Q ss_pred EecCCCeeecCCCceEEcCCCeEEEEEE---EecCCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEE
Q psy7042 179 KIGTPPRIDRMPNALYIPEGDNTKVKIF---YAGDQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYT 255 (2245)
Q Consensus 179 ~V~~~P~~~~~~~~~~v~~G~~~~l~C~---~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 255 (2245)
.+..|+..........- .-.|. +.++|.+..+|..++..+........+..+...-+........+.|.|+
T Consensus 271 ~~~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~ 344 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYT 344 (774)
T ss_pred EEecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcce
Confidence 98888764433322111 22344 3367788899998887765433322222221012333344667899999
Q ss_pred EEEEcCCcceEEEEEEEEecCC
Q psy7042 256 VNLSNSSGSVSGTFTINITGLP 277 (2245)
Q Consensus 256 C~a~n~~g~~~~~~~l~V~~~p 277 (2245)
|.+.|..|.........+...|
T Consensus 345 ~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 345 LFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeecccCccccccCcCccccCC
Confidence 9999999888777766666655
No 418
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=88.65 E-value=1.8 Score=41.89 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCCCCCceeeeccCCcEEEEecCCCCCCCcceeeeEEEEeeccccceEEcc--cceecceEEecCCC--CCceEEEEEE
Q psy7042 1231 PSPPQGPLDVSDITPESCSLSWKPPLDDGGSPITNYVVEKYESATGFWSKLS--SFVRSPAYDVFGLE--TNRQYRFRVR 1306 (2245)
Q Consensus 1231 p~~p~~~~~~~~~~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~~l~~L~--~~t~Y~~~v~ 1306 (2245)
..++|.++.+... .....|.|+++.... .-..|.++|.....+.|..+. .....+...+++.. ....|.++|+
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~~--~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGPGSP--PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEESTTSS--STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCCCCC--CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence 3345556666654 345789999854322 357899999977788998873 45556778887744 6889999999
Q ss_pred Eecccc
Q psy7042 1307 AENQYG 1312 (2245)
Q Consensus 1307 A~n~~G 1312 (2245)
|.....
T Consensus 98 A~~~~~ 103 (107)
T PF01108_consen 98 AEVGNQ 103 (107)
T ss_dssp EEETTE
T ss_pred EEeCCc
Confidence 986543
No 419
>PHA03042 CD47-like protein; Provisional
Probab=88.30 E-value=1.5 Score=47.91 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=50.6
Q ss_pred ecCccEEEEEEEEee-----CCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEE
Q psy7042 2100 IQNHNAQFQCTITGC-----PKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAE 2174 (2245)
Q Consensus 2100 ~~g~~v~l~C~~~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 2174 (2245)
.-.+++.+.|.+... -.-.++|.+|++.+...+. .+.++|.+..-+ .-.|+|+|+|.+...+.++.+.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~------tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN------TNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC------CcceEEEEeccc-cCCCceeEEEeecccCccEEEE
Confidence 357899999999732 2445999999986653221 123567765443 3489999999998777777788
Q ss_pred EEEE
Q psy7042 2175 LIIM 2178 (2245)
Q Consensus 2175 l~V~ 2178 (2245)
|+-.
T Consensus 102 Lk~~ 105 (286)
T PHA03042 102 LQYV 105 (286)
T ss_pred EEEE
Confidence 7664
No 420
>KOG3632|consensus
Probab=87.87 E-value=3.4 Score=53.15 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=59.6
Q ss_pred EecCCCCCcccEEee-eeCceEEEEecCCC-----CCCCCccceEEEeeeecCCCceEEecc-eeeeceEEEecCCC-Cc
Q psy7042 898 VLDRPHPPENLHADE-FAGDSLTLYWTPPR-----DNGGSEITNYVVEKKDYNSTVWTKVSS-YVTTPFVRVRNLAI-GS 969 (2245)
Q Consensus 898 ~~~~P~~p~~l~~~~-~~~~~~~l~W~~p~-----~~~g~~i~~y~i~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p-~~ 969 (2245)
..++|.||.++.+.. .+...+.++|.||. ..||..+++|-|+... ....++.. ....+.+.+..|.. ..
T Consensus 765 pAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg---qkv~Evafptagst~VelsQlq~~l~ 841 (1335)
T KOG3632|consen 765 PAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG---QKVEEVAFPTAGSTKVELSQLQDGLY 841 (1335)
T ss_pred cCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC---ceeeeeecccCCceEEEeeeehhhhe
Confidence 447999999998865 56788999999973 3467788899998663 23333332 22344455555555 55
Q ss_pred eeeEEEEEEeccccCCCccc
Q psy7042 970 TYEFRVMAENQYGLSKPALT 989 (2245)
Q Consensus 970 ~y~~~v~a~n~~g~~~~s~~ 989 (2245)
...+.|+.....|++.-+..
T Consensus 842 ~~~V~vRtms~~gesvdsip 861 (1335)
T KOG3632|consen 842 HGAVGVRTMSVPGESVDSIP 861 (1335)
T ss_pred ecceeEEecccCcccccccc
Confidence 66778888777777655543
No 421
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=87.83 E-value=13 Score=39.97 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=65.7
Q ss_pred ceEEEECCeeccCCC---eEEEEEcCc---EEEEEE-eeeccCCCeEEEEEEEcCccccee-----EEEEEecCCCeeec
Q psy7042 121 KCRWLRNGREISSGA---RYRVETAGG---VFRLHF-NEVTDVDNGDYTCEAYNSVGFAHT-----SSRVKIGTPPRIDR 188 (2245)
Q Consensus 121 ~i~W~~~g~~l~~~~---~~~~~~~~~---~~~L~i-~~~~~~d~G~Y~C~a~n~~g~~~~-----~~~l~V~~~P~~~~ 188 (2245)
.+.|+.||.++.... ......+|. .++|.+ .+...+-.=..+|.+.-..+.... ++.=.|..+|.+..
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 589999999887432 233334441 234444 222333344689999865443222 22233455555432
Q ss_pred CCCceEEcCCCeEEEEEEEecCC--CceEEEeeCceeeecCCceEEEEe--CCeEEEEEcccCc--cCce--eEEEEEE
Q psy7042 189 MPNALYIPEGDNTKVKIFYAGDQ--PMEVSLTKNGRVVQSDDRFKFTVL--DDYIIIFIKEIRK--EDAG--DYTVNLS 259 (2245)
Q Consensus 189 ~~~~~~v~~G~~~~l~C~~~g~p--~~~i~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~~~~--~d~G--~Y~C~a~ 259 (2245)
....|. ..|.+.-.| ...+.|.-++.............. +.-+...|.+..+ +..| .|+|.+.
T Consensus 88 -----~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 88 -----RFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred -----EecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 333343 346665545 268999987765422222111111 1112233333322 3445 8999976
No 422
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=87.09 E-value=2.6 Score=39.09 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.3
Q ss_pred EeeecceeEEEEccCCcCCceEEEEEEEcCCcce
Q psy7042 1472 KQLTMNSASLVVKNSQRSDGGQYRLQLKNPAGFD 1505 (2245)
Q Consensus 1472 ~~~~~~~~~L~i~~~~~~d~G~Y~c~a~n~~g~~ 1505 (2245)
+.++..+.+|.|+.+++.|+|.|...+++..|.-
T Consensus 64 ~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 64 FNFTSENLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp EEEETTTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred EeeeccCceEEEeecCcccCceEEEEEEcCCCcE
Confidence 4566778999999999999999999999998865
No 423
>KOG0200|consensus
Probab=87.01 E-value=11 Score=49.90 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=63.8
Q ss_pred cccceecccccccccccCceeEEEEeeeccc-------CCeeEEEeecc-CCchhhhhhheeeeeeecc-CCCceEeecc
Q psy7042 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKT-------GNIFAAKFIPV-SHNLEKELIRKEIDIMNQL-HHPKLINLHD 884 (2245)
Q Consensus 814 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 884 (2245)
.|+.....+.+...+|.|.|+.+++...... ...+++++.+. ....+.+.+..++.+|... .|++++++.+
T Consensus 290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG 369 (609)
T KOG0200|consen 290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG 369 (609)
T ss_pred ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence 6666667777778999999999987754422 33567777753 3346788899999999887 6999999999
Q ss_pred cccCCcceEEEEEEe
Q psy7042 885 AFEDDDEMVLIFEVL 899 (2245)
Q Consensus 885 ~~~~~~~~~~~~~~~ 899 (2245)
+++......+..+..
T Consensus 370 ~~t~~~~~~~v~Ey~ 384 (609)
T KOG0200|consen 370 ACTQDGPLYVIVEYA 384 (609)
T ss_pred eeccCCceEEEEEec
Confidence 888866665555443
No 424
>PHA03042 CD47-like protein; Provisional
Probab=86.90 E-value=2.4 Score=46.34 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=47.4
Q ss_pred CCeEEEEEEEecC-----CCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 198 GDNTKVKIFYAGD-----QPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 198 G~~~~l~C~~~g~-----p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
.+++.+.|.+..- -...+.|..+|..+-..+.. +...|.+.. ..+-.|+|+|+|.+...+......|.
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEEEE
Confidence 6789999998742 25568999999988644432 223465543 34568999999998776666666655
Q ss_pred E
Q psy7042 273 I 273 (2245)
Q Consensus 273 V 273 (2245)
-
T Consensus 104 ~ 104 (286)
T PHA03042 104 Y 104 (286)
T ss_pred E
Confidence 3
No 425
>PHA03283 envelope glycoprotein E; Provisional
Probab=86.27 E-value=14 Score=45.00 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=50.5
Q ss_pred EEEEeeeccCCCeEEEEEEEcCcccceeEEEEEecCCCeee---------cCC------------CceEEcCCCeEEEEE
Q psy7042 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRID---------RMP------------NALYIPEGDNTKVKI 205 (2245)
Q Consensus 147 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~---------~~~------------~~~~v~~G~~~~l~C 205 (2245)
.|+|.+++.+|+|.|+-...+..+...+.+.|+|..++.-. ..| ....-.+|+++.+.-
T Consensus 135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi 214 (542)
T PHA03283 135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV 214 (542)
T ss_pred eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence 49999999999999999999877755566778887622111 111 223446799998877
Q ss_pred EEecC---C--CceEEEee
Q psy7042 206 FYAGD---Q--PMEVSLTK 219 (2245)
Q Consensus 206 ~~~g~---p--~~~i~W~~ 219 (2245)
..... + ..+|.||.
T Consensus 215 ~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 215 HLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EEeeccCCCCceEEEEEEE
Confidence 65432 2 45789984
No 426
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=84.24 E-value=30 Score=31.83 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=52.6
Q ss_pred eccCCceEEcCCCeEEEEEEecCcCCCeEEEeeCCEeccCCceEEEEecCcEEEEEEeeeccCCCeEEEEEEecCceeeE
Q psy7042 1701 IVPLKDLVVPLGKLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGFAH 1780 (2245)
Q Consensus 1701 ~~~~~~~~~~~G~~v~L~C~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 1780 (2245)
...|....+..|+++.+.|..+-..+..+-|.-. -.+..+....+-..+.+.+++. | ..-.|.+.=......
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEE
Confidence 3456778899999999999986444434555221 1222233334455688899996 4 466788865444566
Q ss_pred EEEEEEecCCCc
Q psy7042 1781 TSSRVKIGTPPR 1792 (2245)
Q Consensus 1781 ~~~~l~V~~~p~ 1792 (2245)
.++.|+|..+|.
T Consensus 79 ~~~~ItVY~~Pe 90 (91)
T PF03921_consen 79 ASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEB--S
T ss_pred eEEeeEEeCCCC
Confidence 788899888774
No 427
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=83.87 E-value=3.6 Score=39.88 Aligned_cols=73 Identities=25% Similarity=0.273 Sum_probs=46.3
Q ss_pred CCCcccEEeeeeCceEEEEecCCCCC-----CCCc------cceEEEeeeecCCCceEEecceeeeceEEEecCCCCcee
Q psy7042 903 HPPENLHADEFAGDSLTLYWTPPRDN-----GGSE------ITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLAIGSTY 971 (2245)
Q Consensus 903 ~~p~~l~~~~~~~~~~~l~W~~p~~~-----~g~~------i~~y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~~~y 971 (2245)
+||. +.+ ...+.+|.|.+.+|..+ .+.. -..|.|.+....... ...........+.|.+|.|++.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~-~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE-KKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC-EEEEEESSSEEEEEES--TTSEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc-ceEEEeecCCEEEEeCCCCCCCE
Confidence 3555 666 56788999999988611 1101 135889888765552 22223334556799999999999
Q ss_pred eEEEEEE
Q psy7042 972 EFRVMAE 978 (2245)
Q Consensus 972 ~~~v~a~ 978 (2245)
-++|.|.
T Consensus 81 Cv~V~~~ 87 (106)
T PF09294_consen 81 CVSVQAF 87 (106)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999993
No 428
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=83.72 E-value=9.2 Score=35.65 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=43.6
Q ss_pred EEeeCCCe--EEEeeCCEeeCC---CCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceee-EEEEEEEE
Q psy7042 2111 ITGCPKPT--ISWLKGSREITP---SARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKS-TKAELIIM 2178 (2245)
Q Consensus 2111 ~~g~P~p~--i~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~ 2178 (2245)
..+.+... ++|..+...... ..++.+..+.- .|.|+.++.+|+|.|.=+.+|..|... ..+.+.|.
T Consensus 36 l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 36 LPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp ETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cccCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 33445554 666655544433 23566655554 899999999999999999999999983 33666653
No 429
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=83.26 E-value=1.9e+02 Score=39.40 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=50.9
Q ss_pred CCCCCcccEEeeeeCceEEEEecCCCC--CCCCccceEEEeeeecCCC---ceE---E------eccee---eeceEEEe
Q psy7042 901 RPHPPENLHADEFAGDSLTLYWTPPRD--NGGSEITNYVVEKKDYNST---VWT---K------VSSYV---TTPFVRVR 963 (2245)
Q Consensus 901 ~P~~p~~l~~~~~~~~~~~l~W~~p~~--~~g~~i~~y~i~~~~~~~~---~~~---~------~~~~~---~~~~~~i~ 963 (2245)
+|....+|++. .....+.|+|+.|.+ +.| ...+|.|++...-.. .+. . +.... ..-.+...
T Consensus 755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~ 832 (863)
T TIGR00868 755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHG-RADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPE 832 (863)
T ss_pred CCccceeeEEe-ecCCEEEEEeeCCCccCCCC-ccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCC
Confidence 77778888874 355569999999976 444 889999998752110 000 0 01111 12234444
Q ss_pred cCC--CCceeeEEEEEEecccc
Q psy7042 964 NLA--IGSTYEFRVMAENQYGL 983 (2245)
Q Consensus 964 ~L~--p~~~y~~~v~a~n~~g~ 983 (2245)
+.. .++.|.|.++|.+..|.
T Consensus 833 ~~~~~~~~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 833 GIPIENGTDLFIAVQAIDKANL 854 (863)
T ss_pred cccccCCeEEEEEEEEEccccc
Confidence 433 57789999999998873
No 430
>KOG4806|consensus
Probab=82.36 E-value=80 Score=36.20 Aligned_cols=144 Identities=14% Similarity=0.204 Sum_probs=78.7
Q ss_pred ceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCCCCCCCeeEee--cCCeEEEEecCCCCCCCCccce
Q psy7042 958 PFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDS--TEDSISLVWSKPRHDGGSPIQR 1035 (2245)
Q Consensus 958 ~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~ 1035 (2245)
+.+.-..+.++..|.++++..|+.... ...-.....-.+....|.-|.+.++..+ .-+++.|.|.-..++ -..
T Consensus 284 ~~~~Qfvv~~~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~----~~k 358 (454)
T KOG4806|consen 284 TYIRQFVVLPGERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE----ELK 358 (454)
T ss_pred eeeeEEEecCCCceEEEEEecCCchhh-heeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch----hee
Confidence 345567788999999999999876532 1111111112234577888888877654 468889999853221 134
Q ss_pred EEEEEEecCCccceec-----cccccCCccee--EEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEE
Q psy7042 1036 YIVEKRLISDDKWIKA-----SMAHIPDTSLK--YVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRV 1108 (2245)
Q Consensus 1036 y~v~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v 1108 (2245)
|=|......+.+-... ....++..... +-.|+.-.+.-..-. +.+.-+|.||.|+..|..-|
T Consensus 359 yCIy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~-----------~i~teTI~gL~PgssYlldv 427 (454)
T KOG4806|consen 359 YCIYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPD-----------NIETETILGLMPGSSYLLDV 427 (454)
T ss_pred EEEEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchh-----------hhhhhhhcccccCceEEEEE
Confidence 5554443333211111 11111222222 233443221111111 11222799999999999999
Q ss_pred EEEecCCCC
Q psy7042 1109 CAVNAAGQG 1117 (2245)
Q Consensus 1109 ~A~n~~G~~ 1117 (2245)
.|.-..|..
T Consensus 428 ~a~~~~g~~ 436 (454)
T KOG4806|consen 428 TANLSMGKP 436 (454)
T ss_pred EEcccCCcc
Confidence 998777654
No 431
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=82.20 E-value=2.4 Score=41.17 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=44.3
Q ss_pred CeeeeecCCcEEEEeeCCCC-----CCC------cccccEEEEeeeCCCCCeEEEceeeeeeEEEecCCCCCEEEEEEEE
Q psy7042 676 PTVEDIGHDSLALVWRAPIW-----DGG------SNITNYIVEKREHPMSSWIRVGNTRFTTMAITGLSPGHQYEFRVYA 744 (2245)
Q Consensus 676 ~~~~~~~~~si~lsW~~p~~-----~~~------~~~~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~L~p~t~y~~~v~a 744 (2245)
+.+ .....++.|.+.+|.. ..+ -....|.|.+.......-..........+.+.+|.|++.|.++|.|
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEEEEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEEEEEEE
Confidence 444 6678899999997751 111 0135699998887666333333333456789999999999999998
No 432
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.09 E-value=6.1 Score=36.33 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=45.0
Q ss_pred CcceEEeCCCeEEEEEEEee-----ecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEE
Q psy7042 97 LKDLVVPLGKLLTLQCEATG-----TPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAY 166 (2245)
Q Consensus 97 ~~~~~v~~G~~v~L~C~~~g-----~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 166 (2245)
|+...+..|++++..|.... .....|.|..|+..++. .+|....++. ..++|.+.....+-.|.|...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~in~~~-SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRVINDTV-SSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEEESTTE-EEEEESS--SSEEEEEEEEEC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcceeCCeE-EEEEEccCCCCCceEEEEEEc
Confidence 34456788999999999952 24567999999996654 4666655443 567887777766667777743
No 433
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=81.57 E-value=13 Score=33.29 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=34.3
Q ss_pred CceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEE-EcCCcceEEEEEEEE
Q psy7042 212 PMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNL-SNSSGSVSGTFTINI 273 (2245)
Q Consensus 212 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V 273 (2245)
.+.+.|+-.+..+..... .+........|+|.++|.| .+..-.......|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 556777776655433333 3556677789999999999 565555555555554
No 434
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=80.95 E-value=25 Score=31.65 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEE-EeCCceeeEEEEEEE
Q psy7042 2116 KPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRA-VNKGGVKSTKAELII 2177 (2245)
Q Consensus 2116 ~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~~~~~~l~V 2177 (2245)
.|++.|+-.+..+ ..... .+.......+|+|.+.|.| .|..-..+....|.|
T Consensus 26 ~~~~~l~~~~~k~--------~~~~~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKS--------LETKK--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEE--------EEESS--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccc--------cccce--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4557777654322 22222 5677788889999999999 666555555566655
No 435
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=80.54 E-value=5.6 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=23.0
Q ss_pred CCceEEeeccceeeecCccEEEEEEEEee-CC-CeEEEeeC
Q psy7042 2086 KAPEIIVPLRNANAIQNHNAQFQCTITGC-PK-PTISWLKG 2124 (2245)
Q Consensus 2086 ~~p~~~~~~~~~~~~~g~~v~l~C~~~g~-P~-p~i~W~~~ 2124 (2245)
.||.+...-+. ..+ .++|+|.|.|+ |. ..++|.||
T Consensus 202 vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 45666543221 122 68999999987 33 34899999
No 436
>KOG0595|consensus
Probab=80.36 E-value=2.1 Score=49.96 Aligned_cols=79 Identities=38% Similarity=0.645 Sum_probs=62.2
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccC--CchhhhhhheeeeeeeccCCCceEeecccccCCcceEEE
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS--HNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLI 895 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (2245)
....|.+..++|.|.|+.+|+.++++++..+++|-+.-. .....+.+..|+.++....|++++.+.+.........+.
T Consensus 8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV 87 (429)
T KOG0595|consen 8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV 87 (429)
T ss_pred ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence 445677888899999999999999999988888776433 344667788999999999999999998766555544433
Q ss_pred E
Q psy7042 896 F 896 (2245)
Q Consensus 896 ~ 896 (2245)
.
T Consensus 88 M 88 (429)
T KOG0595|consen 88 M 88 (429)
T ss_pred E
Confidence 3
No 437
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=80.34 E-value=8.8 Score=35.31 Aligned_cols=69 Identities=12% Similarity=0.216 Sum_probs=46.2
Q ss_pred CCCceEEcCCCeEEEEEEEec-----CCCceEEEeeCceeeecCCceEEEEeCCeEEEEEcccCccCceeEEEEEE
Q psy7042 189 MPNALYIPEGDNTKVKIFYAG-----DQPMEVSLTKNGRVVQSDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLS 259 (2245)
Q Consensus 189 ~~~~~~v~~G~~~~l~C~~~g-----~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 259 (2245)
.|+...+..|+++++.|.... .....|.|..|+..+ +...+.... +..+.+++.+.....+-.|-|...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in-~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVIN-DTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEES-TTEEEEEESS--SSEEEEEEEEEC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeC-CeEEEEEEccCCCCCceEEEEEEc
Confidence 355667899999999999852 256789999999954 444544443 344678888887777777888743
No 438
>KOG4806|consensus
Probab=78.99 E-value=30 Score=39.35 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=58.5
Q ss_pred ccceeEEEEEEcCCcceeEEEEEEEEC------CCCCCCCCceeeec--cCCcEEEEecCCCCCCCcceeeeEEEEeecc
Q psy7042 1203 TDSGSYTIQLVNTVGSDSASCKVYVVD------KPSPPQGPLDVSDI--TPESCSLSWKPPLDDGGSPITNYVVEKYESA 1274 (2245)
Q Consensus 1203 ~~~~~Y~~~a~n~~g~~~~s~~~~v~~------~p~~p~~~~~~~~~--~~~s~~l~W~~p~~~~g~~i~~Y~v~~~~~~ 1274 (2245)
...+.|.++..|..-.. ....+-..+ .|.-| .+-.+..+ .-+++++.|.-..+. -..|.|+.....
T Consensus 294 ~~~~~~rf~~~ndde~~-~~v~V~aSt~~t~~~~P~LP-~dTtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy~~~~~ 367 (454)
T KOG4806|consen 294 GERYLMRFEPSNDDEAL-QKVMVAASTEATFRDLPELP-QDTTVKNVRRRCSSATIAWNGSPDE----ELKYCIYVFNLP 367 (454)
T ss_pred CCceEEEEEecCCchhh-heeEeeeecccccCcCCCCC-CCceEeeeccccchheeeeccCcch----heeEEEEEeccc
Confidence 56677788877754322 222222222 23333 33344443 446789999754332 357877654332
Q ss_pred ccc-------------------------eEEcc----cceecceEEecCCCCCceEEEEEEEeccccCCCC
Q psy7042 1275 TGF-------------------------WSKLS----SFVRSPAYDVFGLETNRQYRFRVRAENQYGVSEP 1316 (2245)
Q Consensus 1275 ~~~-------------------------~~~~~----~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~~ 1316 (2245)
..+ |.... ...+...-+|.||.||..|.+.|.|.-..|...|
T Consensus 368 ~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 368 QRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred chhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 211 11110 0111223568899999999999999776665544
No 439
>KOG0593|consensus
Probab=78.82 E-value=1 Score=49.90 Aligned_cols=78 Identities=36% Similarity=0.686 Sum_probs=63.2
Q ss_pred ccccccccccCceeEEEEeeecccCCeeEEEeeccCC--chhhhhhheeeeeeeccCCCceEeecccccCCcceEEEEEE
Q psy7042 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEV 898 (2245)
Q Consensus 821 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2245)
.|+....+|.|.|+.++.|+.+++|..++++-..... ..=.+.-++++.++....|++++++...+....-.-+.++.
T Consensus 3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~ 82 (396)
T KOG0593|consen 3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY 82 (396)
T ss_pred HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence 4667778999999999999999999999987664333 33456777899999999999999999888777666666654
No 440
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=77.34 E-value=89 Score=34.00 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred ceeEEEEEeeecccceEEEEEEeecCCcceEEecceeeeeceEEE-CCCccCCcEEEEEEEE-cCCCCCCCCCccccEEE
Q psy7042 5 GNTTIRFYYCEIIVDDCYIIERREVGGAIWLKCNDYNVLECSFSV-LNLVEGNDYEFRIIAV-NAIGKSEPSICTTPVKI 82 (2245)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~i-~~~~~~d~G~Y~C~a~-n~~g~~~~~~~~~~~~v 82 (2245)
+-++++||.-+..+...++.+. ..|..+| .....++|.+ -+...+-.-..+|++. ......... ..+
T Consensus 5 ~S~~~~Wf~dg~~v~~~~~~~~-----~~~~~~G-~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r-~~a---- 73 (211)
T PF02124_consen 5 RSVRFRWFEDGNPVEPRFIRDS-----SQVWSDG-LFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETR-FNA---- 73 (211)
T ss_pred CcEEEEEEECCEeCCccceeeE-----EEEecCC-cEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeE-eec----
Confidence 5678999998887776666543 3333334 2334566777 3333334458899865 222122111 111
Q ss_pred eeccCCCCCceecCCcceEEeCCCeEEEEEEEeeecC--CceEEEECCeeccCCCeEEEEE----cCcEEEEEEeee--c
Q psy7042 83 CEFVGGEKPDFIVPLKDLVVPLGKLLTLQCEATGTPV--PKCRWLRNGREISSGARYRVET----AGGVFRLHFNEV--T 154 (2245)
Q Consensus 83 ~~~~~~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~l~~~~~~~~~~----~~~~~~L~i~~~--~ 154 (2245)
...|.+..+|.-..-.++.. ..|.+.=.|. ..+.|.-++............. .-+. ..|++. .
T Consensus 74 -----~~~P~Vy~~P~vsv~F~~g~--AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pgl--vnirs~~pl 144 (211)
T PF02124_consen 74 -----TATPSVYPKPRVSVRFEDGY--AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGL--VNIRSRRPL 144 (211)
T ss_pred -----ccccceecCCEEEEEecCCE--EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcce--eEeecccCC
Confidence 12344444444322222333 3488865552 5799998887643222222211 1122 333333 3
Q ss_pred cCCCe--EEEEEEE-cCcccceeEEEEEecCCCeeecCC
Q psy7042 155 DVDNG--DYTCEAY-NSVGFAHTSSRVKIGTPPRIDRMP 190 (2245)
Q Consensus 155 ~~d~G--~Y~C~a~-n~~g~~~~~~~l~V~~~P~~~~~~ 190 (2245)
....| .|+|... -..+--..+.+......|.....|
T Consensus 145 s~~~~~~~YtC~l~GYP~~~p~f~~~~~yDasP~~~~~p 183 (211)
T PF02124_consen 145 SDEDGPVEYTCRLIGYPDILPVFEDTATYDASPSAQGFP 183 (211)
T ss_pred CccCCceeEEEEEeeCCCCCCcccceEEEcCCCccCCCc
Confidence 34456 8999986 233333344455555555443333
No 441
>PHA03286 envelope glycoprotein E; Provisional
Probab=76.95 E-value=45 Score=39.90 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=49.5
Q ss_pred EEEEeeeccCCCeEEEEEEEcCcccceeE-EEEEecC-----CCeee--------------cCCCceEEcCCCeEEEEEE
Q psy7042 147 RLHFNEVTDVDNGDYTCEAYNSVGFAHTS-SRVKIGT-----PPRID--------------RMPNALYIPEGDNTKVKIF 206 (2245)
Q Consensus 147 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~-----~P~~~--------------~~~~~~~v~~G~~~~l~C~ 206 (2245)
.|+|.+++..++|.|+=...|..|.+..+ +-|+|.. +|... .......-.+|+++.+.-.
T Consensus 128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~ 207 (492)
T PHA03286 128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT 207 (492)
T ss_pred ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence 49999999999999999999888776654 4577731 22221 1223444567999987766
Q ss_pred Eec----CC-CceEEEee
Q psy7042 207 YAG----DQ-PMEVSLTK 219 (2245)
Q Consensus 207 ~~g----~p-~~~i~W~~ 219 (2245)
... .+ ..+|.||.
T Consensus 208 l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 208 AHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EeecccCCCceEEEEEEE
Confidence 541 12 55889984
No 442
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.89 E-value=49 Score=30.54 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=51.3
Q ss_pred eecCCcceEEeCCCeEEEEEEEeeecCCc-eEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEEEEEcCccc
Q psy7042 93 FIVPLKDLVVPLGKLLTLQCEATGTPVPK-CRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTCEAYNSVGF 171 (2245)
Q Consensus 93 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 171 (2245)
+.+.|....|..|+++.+.|..+ -|.|. +-|.-. -.+..+....+-..+.+.+++. | ..-.|.+.=....
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~------L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q 76 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETS------LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQ 76 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEES-SSS-SEEEEESS------SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEE
T ss_pred EEEECCccEECCCCCEEEEEcCC-CCCCCcceEEEe------cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeE
Confidence 34567778899999999999985 34442 344211 1122232323344577889886 4 5778998854444
Q ss_pred ceeEEEEEecCCCe
Q psy7042 172 AHTSSRVKIGTPPR 185 (2245)
Q Consensus 172 ~~~~~~l~V~~~P~ 185 (2245)
...++.|+|+.+|.
T Consensus 77 ~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 77 SSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEB--S
T ss_pred EEeEEeeEEeCCCC
Confidence 55688899998874
No 443
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=76.85 E-value=8.1 Score=36.74 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEce-----eee-----eeEEEecCCCCCE
Q psy7042 668 DRPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN-----TRF-----TTMAITGLSPGHQ 737 (2245)
Q Consensus 668 ~~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~-----~~~-----~~~~i~~L~p~t~ 737 (2245)
.+|..|.++.+.......++.-|++. ..++. ...|.+.|.-.. ..|..... +.. ..+.-.+..-.+.
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g-~~~~l-~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPG-SEGNL-PTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEE-SSSTS-TCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCC-CCCCC-CCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 36788888899888999999999954 33332 334999998776 66766642 122 3344447889999
Q ss_pred EEEEEEEEecccC
Q psy7042 738 YEFRVYAENVYGR 750 (2245)
Q Consensus 738 y~~~v~a~n~~G~ 750 (2245)
|.++|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999998884
No 444
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=73.59 E-value=7.8 Score=45.03 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.4
Q ss_pred eEEEEEEEec-CC-CceEEEeeC
Q psy7042 200 NTKVKIFYAG-DQ-PMEVSLTKN 220 (2245)
Q Consensus 200 ~~~l~C~~~g-~p-~~~i~W~~~ 220 (2245)
.++|+|.|.| +| ...+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 44 557789999
No 445
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=71.72 E-value=22 Score=33.00 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCceEEeeccceeeecC----ccEEEEEEEEeeCCCeEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEE
Q psy7042 2085 AKAPEIIVPLRNANAIQN----HNAQFQCTITGCPKPTISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVC 2160 (2245)
Q Consensus 2085 ~~~p~~~~~~~~~~~~~g----~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 2160 (2245)
..+++|..+..+..+... +...|.+.+.|. .+.+.||-||+.+..... +. .+.+. +...|.|+-
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------~~--~~~~~---~~~~G~h~l 75 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------GH--QLFWQ---PDRPGEHTL 75 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC------CC--eEEeC---CCCCeeEEE
Confidence 345667666655444332 356677777765 559999999998843331 11 34432 357799999
Q ss_pred EEEeCCceeeE
Q psy7042 2161 RAVNKGGVKST 2171 (2245)
Q Consensus 2161 ~a~N~~G~~~~ 2171 (2245)
++....|...+
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 99998887654
No 446
>KOG0600|consensus
Probab=71.47 E-value=2.7 Score=50.58 Aligned_cols=78 Identities=31% Similarity=0.569 Sum_probs=60.3
Q ss_pred cccccccccccCceeEEEEeeecccCCeeEEEeeccCC--chhhhhhheeeeeeeccCCCceEeecccccCC--cceEEE
Q psy7042 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHPKLINLHDAFEDD--DEMVLI 895 (2245)
Q Consensus 820 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 895 (2245)
+.|+..+.||.|.|+.+|+++...++..++++=+.... .........|+.|+...+|++++.+..-.+.. +...+.
T Consensus 117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlV 196 (560)
T KOG0600|consen 117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLV 196 (560)
T ss_pred HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEE
Confidence 46778899999999999999999999999998776544 33344555799999999999999988765554 334444
Q ss_pred EE
Q psy7042 896 FE 897 (2245)
Q Consensus 896 ~~ 897 (2245)
++
T Consensus 197 Fe 198 (560)
T KOG0600|consen 197 FE 198 (560)
T ss_pred Ee
Confidence 43
No 447
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=70.76 E-value=19 Score=34.28 Aligned_cols=81 Identities=23% Similarity=0.386 Sum_probs=59.5
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEeccee----ee-----ceEEEecCCCCce
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYV----TT-----PFVRVRNLAIGST 970 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~----~~-----~~~~i~~L~p~~~ 970 (2245)
-+|+.|.++.+.......++.-|++....+ .-..|.+.|...+ ..|..-.... .. ..|.-.+..-.+.
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~--l~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~ 82 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGN--LPTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVP 82 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSST--STCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCC--CCCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEE
Confidence 378899999999888899999999976544 2234999998766 6666554321 22 3444458899999
Q ss_pred eeEEEEEEecccc
Q psy7042 971 YEFRVMAENQYGL 983 (2245)
Q Consensus 971 y~~~v~a~n~~g~ 983 (2245)
|.++|.|.|..|.
T Consensus 83 y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 83 YCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEETTEE
T ss_pred EEEEEEeccCCCc
Confidence 9999999998883
No 448
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=70.34 E-value=20 Score=33.24 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=45.1
Q ss_pred CCCCceecCCcceEE--eCC--CeEEEEEEEeeecCCceEEEECCeeccCCCeEEEEEcCcEEEEEEeeeccCCCeEEEE
Q psy7042 88 GEKPDFIVPLKDLVV--PLG--KLLTLQCEATGTPVPKCRWLRNGREISSGARYRVETAGGVFRLHFNEVTDVDNGDYTC 163 (2245)
Q Consensus 88 ~~~P~~~~~~~~~~v--~~G--~~v~L~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 163 (2245)
..+|.|+.++....+ ..+ +...|.+++.+. ...+.|+.||..+..... +. .+. ......|.|+-
T Consensus 8 ~~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------~~--~~~---~~~~~~G~h~l 75 (89)
T PF06832_consen 8 GSPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------GH--QLF---WQPDRPGEHTL 75 (89)
T ss_pred CCCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC------CC--eEE---eCCCCCeeEEE
Confidence 356777777665433 222 255566666554 448999999999943221 11 122 23355788988
Q ss_pred EEEcCccccee
Q psy7042 164 EAYNSVGFAHT 174 (2245)
Q Consensus 164 ~a~n~~g~~~~ 174 (2245)
.+.+..|...+
T Consensus 76 ~vvD~~G~~~~ 86 (89)
T PF06832_consen 76 TVVDAQGRSAS 86 (89)
T ss_pred EEEcCCCCEEE
Confidence 88888776544
No 449
>PHA03282 envelope glycoprotein E; Provisional
Probab=69.65 E-value=92 Score=37.54 Aligned_cols=29 Identities=7% Similarity=0.009 Sum_probs=23.6
Q ss_pred ecceeeeeceEEECCCccCCcEEEEEEEE
Q psy7042 37 CNDYNVLECSFSVLNLVEGNDYEFRIIAV 65 (2245)
Q Consensus 37 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 65 (2245)
+......+.+|.|.+++++|+|.|+-.+.
T Consensus 116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~ 144 (540)
T PHA03282 116 PPRVAVVNGTLVLREARETDSGMYVLSVS 144 (540)
T ss_pred CcceeEecceEEEeeccccCCceEEEEec
Confidence 44445567789999999999999999864
No 450
>KOG1094|consensus
Probab=69.24 E-value=2.4 Score=51.70 Aligned_cols=80 Identities=29% Similarity=0.452 Sum_probs=66.5
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccCCch-hhhhhheeeeeeeccCCCceEeecccccCCcceEEEE
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL-EKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIF 896 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2245)
++..+.+.+++|.|.|+.+..|+... +...++|++....+. ...++.++++++....|++++-+.+.|..+.+..+..
T Consensus 536 PRs~L~~~ekiGeGqFGEVhLCeveg-~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~ 614 (807)
T KOG1094|consen 536 PRSRLRFKEKIGEGQFGEVHLCEVEG-PLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMIT 614 (807)
T ss_pred chhheehhhhhcCcccceeEEEEecC-ceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHH
Confidence 45566778999999999999999877 677888888766654 5589999999999999999999999988887776655
Q ss_pred EE
Q psy7042 897 EV 898 (2245)
Q Consensus 897 ~~ 898 (2245)
+.
T Consensus 615 EY 616 (807)
T KOG1094|consen 615 EY 616 (807)
T ss_pred HH
Confidence 43
No 451
>KOG0033|consensus
Probab=68.92 E-value=0.3 Score=51.92 Aligned_cols=81 Identities=37% Similarity=0.701 Sum_probs=65.4
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccC--CchhhhhhheeeeeeeccCCCceEeecccccCCcceEEE
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS--HNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLI 895 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (2245)
..+.|++.+.+|.|.|+.+++|....+|...+++.+... ...+.+.+..++.|....+|++++.++.+....+-..+.
T Consensus 9 f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv 88 (355)
T KOG0033|consen 9 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 88 (355)
T ss_pred cchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence 346788999999999999999999999988877765432 234778888899999999999999999887776655555
Q ss_pred EEE
Q psy7042 896 FEV 898 (2245)
Q Consensus 896 ~~~ 898 (2245)
+..
T Consensus 89 Fe~ 91 (355)
T KOG0033|consen 89 FDL 91 (355)
T ss_pred Eec
Confidence 543
No 452
>PHA03283 envelope glycoprotein E; Provisional
Probab=68.62 E-value=1.2e+02 Score=37.37 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=48.1
Q ss_pred EEEeeeccCCCeEEEEEEecCceeeEEEEEEEecCCCcc---------------------ccCCCceEEcCCCeEEEEEE
Q psy7042 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTSSRVKIGTPPRI---------------------DRMPNALYIPEGDNTKVKIF 1813 (2245)
Q Consensus 1755 L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~---------------------~~~~~~~~~~~g~~~~l~C~ 1813 (2245)
|.|.+++.+++|.|+-...+..+.......|.|..++.. .+.-.......|+++.+...
T Consensus 136 l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi~ 215 (542)
T PHA03283 136 LQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSVH 215 (542)
T ss_pred eEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeEE
Confidence 999999999999999999987774444556777552110 01112344557999888776
Q ss_pred EeccC-----CcEEEEEE
Q psy7042 1814 YAGDQ-----PMEVSLTK 1826 (2245)
Q Consensus 1814 ~~~~p-----~~~v~W~~ 1826 (2245)
..... ..+|.|+.
T Consensus 216 l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 216 LESDIGDPSFSATIDWYY 233 (542)
T ss_pred EeeccCCCCceEEEEEEE
Confidence 55432 24788975
No 453
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=66.58 E-value=36 Score=44.07 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=72.9
Q ss_pred eeceEEEecCCCCceeeEEEEEEeccccCCCccccCcccccCCCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccce
Q psy7042 956 TTPFVRVRNLAIGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQR 1035 (2245)
Q Consensus 956 ~~~~~~i~~L~p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~ 1035 (2245)
....+.+.+|.+ -.|.++|+|.|..|.......+..+.+.-+...|..+..+....+. -.+.+.|-.|..+ ..+.+
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dPt~~--~d~~~ 733 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDPTGA--VDITS 733 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecCCcc--eEEee
Confidence 456789999999 6799999999999876554434445555555555455444444332 3456777655521 11222
Q ss_pred EEEEEEecCCccceeccccccCCcceeEEEEeecccccCCccCchhhhhhhhhcccccccccccCCcEEEEEEEEEecCC
Q psy7042 1036 YIVEKRLISDDKWIKASMAHIPDTSLKYVLWVSEGKSIGSERGSTAQFLELLLMFIPNRVTSLIENHEYEFRVCAVNAAG 1115 (2245)
Q Consensus 1036 y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~~~v~A~n~~G 1115 (2245)
-.+++....+.+ ...++++...--. ..-.+|+++..|.|+++++|..|
T Consensus 734 sei~~s~~~d~~-------------------------------~~Ar~LG~~~~~~-~~~~~i~~g~~~~F~~R~Vn~vG 781 (952)
T COG4733 734 TEIRSAVIADGN-------------------------------FQARSLGNLNYPG-LFSVGIQAGLTFWFRNRNVDLVG 781 (952)
T ss_pred eeeeeeccccch-------------------------------hHHhhhhcccccc-ccccCcCCCceEEEEeeeccccc
Confidence 222222111111 1122222211000 02368999999999999999999
Q ss_pred CCC
Q psy7042 1116 QGP 1118 (2245)
Q Consensus 1116 ~~~ 1118 (2245)
...
T Consensus 782 ~~~ 784 (952)
T COG4733 782 NND 784 (952)
T ss_pred ccc
Confidence 754
No 454
>KOG0659|consensus
Probab=66.28 E-value=5.9 Score=43.61 Aligned_cols=79 Identities=33% Similarity=0.648 Sum_probs=64.8
Q ss_pred ccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhh--hhheeeeeeeccCCCceEeecccccCCcceEEEEEE
Q psy7042 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE--LIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEV 898 (2245)
Q Consensus 821 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2245)
+|...+.+|.|+|+.+|......++..+++|=+..+...+.- ...+|++.+...+|++++.+.+.+...+...+.++.
T Consensus 3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf 82 (318)
T KOG0659|consen 3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF 82 (318)
T ss_pred hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence 566778999999999999999999999999888776543322 334588888889999999999999888888888776
Q ss_pred e
Q psy7042 899 L 899 (2245)
Q Consensus 899 ~ 899 (2245)
.
T Consensus 83 m 83 (318)
T KOG0659|consen 83 M 83 (318)
T ss_pred c
Confidence 4
No 455
>PHA03281 envelope glycoprotein E; Provisional
Probab=65.50 E-value=78 Score=38.82 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred EEEEEEeecCCcceEEeccee-----------eeeceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeecc--C
Q psy7042 21 CYIIERREVGGAIWLKCNDYN-----------VLECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFV--G 87 (2245)
Q Consensus 21 ~~~~~~~~~~~~~w~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~--~ 87 (2245)
.|.|+.......-|+.-+... .....|+|.+.+..++|.|+-......|...-+..+ |.|.... .
T Consensus 263 ~F~Vn~~~~~~~~~~~VN~t~vf~~l~~~ip~i~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfL--VtVkg~~~~r 340 (642)
T PHA03281 263 GYRFHAKKAADPPWIVVNISEDFAELEFDPPDIEPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFL--VKLKGDEENH 340 (642)
T ss_pred EEEEccccccCCceEEeccceeeecccCCCCcccCCeeEEEecccccceeEEEEecCCCCcceeEEEE--EEecCCcccC
Confidence 344544444455555544321 134689999999999999999887655654433222 2222111 0
Q ss_pred CCCCceecCCc----------ceEEeCCCeEEEEEEEeee--c---CCceEEEE
Q psy7042 88 GEKPDFIVPLK----------DLVVPLGKLLTLQCEATGT--P---VPKCRWLR 126 (2245)
Q Consensus 88 ~~~P~~~~~~~----------~~~v~~G~~v~L~C~~~g~--p---~~~i~W~~ 126 (2245)
-.+|.++.++. ......|+++.|.-..... . ..+|.|+.
T Consensus 341 ip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 341 IDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred CCCCCccccccCceEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 11233333222 2355789999888877533 1 24699976
No 456
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=65.45 E-value=11 Score=46.60 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=14.7
Q ss_pred eceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeecc-CCCCCc--e----------ecCCcceEEeCCCeEEE
Q psy7042 44 ECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFV-GGEKPD--F----------IVPLKDLVVPLGKLLTL 110 (2245)
Q Consensus 44 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~-~~~~P~--~----------~~~~~~~~v~~G~~v~L 110 (2245)
.+.|.|.+++.+|+|.|+-...|..|..........+.-.... ...+|. + ...+.......|+++.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 3679999999999999999998777666544333222211111 122332 1 11334456688999998
Q ss_pred EEEEeeecC------CceEEEE
Q psy7042 111 QCEATGTPV------PKCRWLR 126 (2245)
Q Consensus 111 ~C~~~g~p~------~~i~W~~ 126 (2245)
.-....... .+|.|+.
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEE
Confidence 887754332 3699986
No 457
>PHA03052 Hypothetical protein; Provisional
Probab=64.42 E-value=18 Score=30.35 Aligned_cols=35 Identities=29% Similarity=0.600 Sum_probs=27.6
Q ss_pred cceEEeCCCeEEEEEEEe-eec--CCceEEEECCeecc
Q psy7042 98 KDLVVPLGKLLTLQCEAT-GTP--VPKCRWLRNGREIS 132 (2245)
Q Consensus 98 ~~~~v~~G~~v~L~C~~~-g~p--~~~i~W~~~g~~l~ 132 (2245)
..+.+..|..++|.|++. |.| .+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 567889999999999994 333 45689998998873
No 458
>KOG4228|consensus
Probab=62.83 E-value=41 Score=45.45 Aligned_cols=129 Identities=12% Similarity=0.038 Sum_probs=72.5
Q ss_pred cCCcceEEEEEEecCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecceeeeceEEEecCC
Q psy7042 887 EDDDEMVLIFEVLDRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSYVTTPFVRVRNLA 966 (2245)
Q Consensus 887 ~~~~~~~~~~~~~~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 966 (2245)
.+..+......+.+-|..|....+......+....|..... ....|.+.++....+ +. .........+....+.
T Consensus 10 ~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~-~~~~~~~~~~s~~~~~ 83 (1087)
T KOG4228|consen 10 LGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YG-YIDVDLTTRLSYPCLS 83 (1087)
T ss_pred CCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC----ChhhhheeeeEeccC-cc-eeeccceeecccCCCC
Confidence 34444455555555666666677777778888888887543 345577766654444 22 2222233446677778
Q ss_pred CCceeeEEEEEEeccccCCCccccCcccccCCCCCC-CCCCCCeeEeecCCeEEEEecCCC
Q psy7042 967 IGSTYEFRVMAENQYGLSKPALTIDPIKAKHPFDVP-GAPGAPKGVDSTEDSISLVWSKPR 1026 (2245)
Q Consensus 967 p~~~y~~~v~a~n~~g~~~~s~~~~~~~~~t~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~ 1026 (2245)
+..-+.+ .+.|..|.+..+.. ..-++....+ ..+....+......++.++|.++.
T Consensus 84 ~~~~~~~--~evnt~~~a~~~~~---~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (1087)
T KOG4228|consen 84 PPSFLEL--VEVNTIGRAPFQCP---VAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFS 139 (1087)
T ss_pred Ccchhhh--hhcccccccccccc---cCCccccccccccccchhhhhhhhhhhccCccccc
Confidence 8877777 77777777666532 2222222222 244444444445555555665443
No 459
>PHA03189 UL14 tegument protein; Provisional
Probab=62.60 E-value=49 Score=37.19 Aligned_cols=80 Identities=23% Similarity=0.396 Sum_probs=46.9
Q ss_pred cCCCceEEcCCCeEEEEEEEecC--CCceEE-----Ee----------eCceeeecC-------CceEEEEeCCe--EEE
Q psy7042 188 RMPNALYIPEGDNTKVKIFYAGD--QPMEVS-----LT----------KNGRVVQSD-------DRFKFTVLDDY--III 241 (2245)
Q Consensus 188 ~~~~~~~v~~G~~~~l~C~~~g~--p~~~i~-----W~----------~~g~~l~~~-------~~~~~~~~~~~--~~L 241 (2245)
..|.++.+.+|+.+++.|.+... |...|+ |- ..|..+..+ .+++++..+-. .+|
T Consensus 57 ~spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltL 136 (348)
T PHA03189 57 NSPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTL 136 (348)
T ss_pred CCCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEE
Confidence 34567788999999999997543 444443 21 123333222 22333333332 344
Q ss_pred EEcccCccCceeEEEEEEcCC-cceEEE
Q psy7042 242 FIKEIRKEDAGDYTVNLSNSS-GSVSGT 268 (2245)
Q Consensus 242 ~i~~~~~~d~G~Y~C~a~n~~-g~~~~~ 268 (2245)
++ ++..+.+|.|.|...|.. |-..+.
T Consensus 137 tF-~v~t~taG~Y~CvLrN~tHglv~~r 163 (348)
T PHA03189 137 TF-RVSTSTAGMYECVLRNETHGLVLQR 163 (348)
T ss_pred EE-EEEecccceEEEEeccccceeeeEE
Confidence 44 455678999999999986 434333
No 460
>PHA03282 envelope glycoprotein E; Provisional
Probab=62.60 E-value=1.7e+02 Score=35.42 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=22.2
Q ss_pred CeEEEEEcccCcccceEEEEEEEcCC
Q psy7042 1844 DYIIIFIKEIRKEDAGDYTVNLSNSS 1869 (2245)
Q Consensus 1844 ~~~~l~i~~~~~~d~G~Y~C~a~n~~ 1869 (2245)
++..|.+.|+..+++|.|.|++..+.
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred CccceEecCCCcccCceEEEEEEECC
Confidence 44579999999999999999997653
No 461
>KOG0032|consensus
Probab=62.34 E-value=9.6 Score=46.72 Aligned_cols=83 Identities=41% Similarity=0.767 Sum_probs=68.3
Q ss_pred ceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCc---hhhhhhheeeeeeeccC-CCceEeecccccCCcce
Q psy7042 817 SVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN---LEKELIRKEIDIMNQLH-HPKLINLHDAFEDDDEM 892 (2245)
Q Consensus 817 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 892 (2245)
.....|.+...+|.|.|+.++.|....++...+.+.+.-... .+.+....++.++.... |++++.+.+.+......
T Consensus 32 ~~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~ 111 (382)
T KOG0032|consen 32 DIKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSV 111 (382)
T ss_pred cccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeE
Confidence 345567888999999999999999999999999999854433 24567888999999997 99999999999888877
Q ss_pred EEEEEEe
Q psy7042 893 VLIFEVL 899 (2245)
Q Consensus 893 ~~~~~~~ 899 (2245)
.+..+..
T Consensus 112 ~lvmEL~ 118 (382)
T KOG0032|consen 112 YLVMELC 118 (382)
T ss_pred EEEEEec
Confidence 6666654
No 462
>PHA03189 UL14 tegument protein; Provisional
Probab=60.80 E-value=63 Score=36.41 Aligned_cols=80 Identities=26% Similarity=0.355 Sum_probs=47.9
Q ss_pred CCCceEEcCCCeEEEEEEEeccCCcEEE-------EE----------ECCEEeecCC-------ceEEEEcCCeEEEEEc
Q psy7042 1796 MPNALYIPEGDNTKVKIFYAGDQPMEVS-------LT----------KNGRVVQSDD-------RFKFTVLDDYIIIFIK 1851 (2245)
Q Consensus 1796 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~-------W~----------~~g~~l~~~~-------~~~~~~~~~~~~l~i~ 1851 (2245)
.+..+.+.+|+.+++.|.+....-|+++ |. .+|+.+.... +.++...+-...|.+.
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt 137 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT 137 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence 4556778899999999998766444333 21 1333332221 2233333333444443
Q ss_pred -ccCcccceEEEEEEEcCC-eeeEEE
Q psy7042 1852 -EIRKEDAGDYTVNLSNSS-GSVSGT 1875 (2245)
Q Consensus 1852 -~~~~~d~G~Y~C~a~n~~-g~~~~~ 1875 (2245)
++..+.+|.|.|+..|.. |.....
T Consensus 138 F~v~t~taG~Y~CvLrN~tHglv~~r 163 (348)
T PHA03189 138 FRVSTSTAGMYECVLRNETHGLVLQR 163 (348)
T ss_pred EEEEecccceEEEEeccccceeeeEE
Confidence 677888999999999974 444433
No 463
>KOG0611|consensus
Probab=59.62 E-value=5.2 Score=46.19 Aligned_cols=82 Identities=34% Similarity=0.628 Sum_probs=67.2
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhh---hheeeeeeeccCCCceEeecccccCCcceEE
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKEL---IRKEIDIMNQLHHPKLINLHDAFEDDDEMVL 894 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 894 (2245)
....|++.+.+|.|.|+.+-.+.....|..++++.+.-....+..+ +..++.||...+|++++.+...+...+..++
T Consensus 51 lkHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvi 130 (668)
T KOG0611|consen 51 LKHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVI 130 (668)
T ss_pred hhhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEE
Confidence 4567899999999999999999999999999998875444333333 4458999999999999999998888888777
Q ss_pred EEEEe
Q psy7042 895 IFEVL 899 (2245)
Q Consensus 895 ~~~~~ 899 (2245)
..+..
T Consensus 131 vMEYa 135 (668)
T KOG0611|consen 131 VMEYA 135 (668)
T ss_pred EEEec
Confidence 77664
No 464
>KOG4278|consensus
Probab=57.75 E-value=5.2 Score=48.94 Aligned_cols=86 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred ccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcce
Q psy7042 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEM 892 (2245)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (2245)
.+|+.-+.....-+.+|.|+|+.+|.-....-...++++.++. +.++.+.+.++.-+|..+.|++++.+++.|+.+.+.
T Consensus 260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE-DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPF 338 (1157)
T KOG4278|consen 260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPF 338 (1157)
T ss_pred chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhh-cchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCe
Confidence 4666666666667899999999999998888888888887754 456778888899999999999999999999999888
Q ss_pred EEEEEEe
Q psy7042 893 VLIFEVL 899 (2245)
Q Consensus 893 ~~~~~~~ 899 (2245)
.+.++..
T Consensus 339 YIiTEfM 345 (1157)
T KOG4278|consen 339 YIITEFM 345 (1157)
T ss_pred EEEEecc
Confidence 8888764
No 465
>PHA03286 envelope glycoprotein E; Provisional
Probab=57.49 E-value=2.5e+02 Score=34.05 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=48.1
Q ss_pred EEEeeeccCCCeEEEEEEecCceeeEEE-EEEEecC-----CCccc--------------cCCCceEEcCCCeEEEEEEE
Q psy7042 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHTS-SRVKIGT-----PPRID--------------RMPNALYIPEGDNTKVKIFY 1814 (2245)
Q Consensus 1755 L~i~~v~~~d~G~Y~C~~~n~~g~~~~~-~~l~V~~-----~p~~~--------------~~~~~~~~~~g~~~~l~C~~ 1814 (2245)
|.|.+++.+++|.|+-...|+.|....+ ..|.|.. +|... ..........|+++.+....
T Consensus 129 L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~l 208 (492)
T PHA03286 129 LTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVTA 208 (492)
T ss_pred eEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEEE
Confidence 9999999999999999999887766555 4556631 22211 12333445579998877765
Q ss_pred ec-c-C---CcEEEEEE
Q psy7042 1815 AG-D-Q---PMEVSLTK 1826 (2245)
Q Consensus 1815 ~~-~-p---~~~v~W~~ 1826 (2245)
.. . . ..+|.|+.
T Consensus 209 ~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 209 HLTNWAGAFSLEFRVLF 225 (492)
T ss_pred eecccCCCceEEEEEEE
Confidence 52 1 1 34788975
No 466
>KOG0663|consensus
Probab=56.67 E-value=8.7 Score=43.83 Aligned_cols=71 Identities=25% Similarity=0.510 Sum_probs=54.5
Q ss_pred cccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhh--hhhheeeeeeeccCCCceEeecccccCCc
Q psy7042 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEK--ELIRKEIDIMNQLHHPKLINLHDAFEDDD 890 (2245)
Q Consensus 820 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (2245)
+.|+..+.++.|.|+.+|+.....+...++++-+.-....+. -...+++.++...+|++++.+.....+..
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~ 148 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSN 148 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccc
Confidence 467889999999999999999999999999887765443221 12335777888889999999876655543
No 467
>KOG0579|consensus
Probab=54.63 E-value=2.2 Score=52.03 Aligned_cols=84 Identities=30% Similarity=0.489 Sum_probs=71.2
Q ss_pred cccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcceE
Q psy7042 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMV 893 (2245)
Q Consensus 814 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (2245)
+...+.+.|.|.-.+|.|+||.+|.+..++++...+.+.+..-..-+.++++-++.|+...+|++++.+.+++.-....-
T Consensus 26 rdlnP~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLw 105 (1187)
T KOG0579|consen 26 RDLNPRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLW 105 (1187)
T ss_pred ccCCHHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceE
Confidence 44567788999999999999999999999998888888888877888999999999999999999999998886655544
Q ss_pred EEEE
Q psy7042 894 LIFE 897 (2245)
Q Consensus 894 ~~~~ 897 (2245)
+.++
T Consensus 106 iliE 109 (1187)
T KOG0579|consen 106 ILIE 109 (1187)
T ss_pred EEEe
Confidence 4443
No 468
>KOG0615|consensus
Probab=53.69 E-value=22 Score=42.14 Aligned_cols=84 Identities=32% Similarity=0.576 Sum_probs=67.2
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccCCc-------hhhhhhheeeeeeeccCCCceEeecccccCCc
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN-------LEKELIRKEIDIMNQLHHPKLINLHDAFEDDD 890 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (2245)
.++.|-+...+|.|.|+.+-.+..+.++..++++.+..... ........|+.++...+|++++.+++-+....
T Consensus 170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d 249 (475)
T KOG0615|consen 170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD 249 (475)
T ss_pred hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence 56778888999999999999999999999999988743222 12334567899999999999999999888888
Q ss_pred ceEEEEEEecC
Q psy7042 891 EMVLIFEVLDR 901 (2245)
Q Consensus 891 ~~~~~~~~~~~ 901 (2245)
...+..+..+-
T Consensus 250 s~YmVlE~v~G 260 (475)
T KOG0615|consen 250 SSYMVLEYVEG 260 (475)
T ss_pred ceEEEEEEecC
Confidence 77777766533
No 469
>KOG0581|consensus
Probab=51.77 E-value=14 Score=43.06 Aligned_cols=82 Identities=26% Similarity=0.463 Sum_probs=68.7
Q ss_pred ccccccccccCceeEEEEeeecccCCeeEEEeeccC-CchhhhhhheeeeeeeccCCCceEeecccccCCcc-eEEEEEE
Q psy7042 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVS-HNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDE-MVLIFEV 898 (2245)
Q Consensus 821 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 898 (2245)
.++-...+|.|..+.++.+.++.++...+.|.+-.. +..-.+++.+|+.++...++++++...+++..+.. ..+..+.
T Consensus 80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY 159 (364)
T KOG0581|consen 80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY 159 (364)
T ss_pred HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence 455568899999999999999999999999998433 34567788999999999999999999999988884 7777776
Q ss_pred ecCC
Q psy7042 899 LDRP 902 (2245)
Q Consensus 899 ~~~P 902 (2245)
.+..
T Consensus 160 MDgG 163 (364)
T KOG0581|consen 160 MDGG 163 (364)
T ss_pred cCCC
Confidence 6543
No 470
>KOG4236|consensus
Probab=50.31 E-value=17 Score=43.93 Aligned_cols=76 Identities=34% Similarity=0.603 Sum_probs=57.0
Q ss_pred cccc--ccccccCceeEEEEeeecccCCeeEEEeecc-CCch-hhhhhheeeeeeeccCCCceEeecccccCCcceEEEE
Q psy7042 821 HYDI--LEEIGTGAFGVVHRCRERKTGNIFAAKFIPV-SHNL-EKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIF 896 (2245)
Q Consensus 821 ~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2245)
.|+| .+.+|+|+|+.+|....+++|..++++.+.- .... ....+..++.|+...+|+.++++-..+++..-..+..
T Consensus 563 vYQif~devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVM 642 (888)
T KOG4236|consen 563 VYQIFADEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVM 642 (888)
T ss_pred HHHhhhHhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEe
Confidence 3444 4689999999999999999999999998732 1111 1245667899999999999999987776655544443
No 471
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=49.82 E-value=27 Score=31.90 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=41.7
Q ss_pred EEEEEE-EecCCCceEEEee--Cceeee-----cCCceEEEEeCCeEEEEEcccCccCceeEEEEEEcCCcceEEEEEEE
Q psy7042 201 TKVKIF-YAGDQPMEVSLTK--NGRVVQ-----SDDRFKFTVLDDYIIIFIKEIRKEDAGDYTVNLSNSSGSVSGTFTIN 272 (2245)
Q Consensus 201 ~~l~C~-~~g~p~~~i~W~~--~g~~l~-----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 272 (2245)
+.-.|. +.|.|+..|+|.- +|..-. .+..+.+ .+.+.+......|.-..+|.+.........++.|+
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV-----~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTV-----ISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEE-----EEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 345899 5799999999974 343211 0111111 12455666777788899999988655555555554
No 472
>KOG0197|consensus
Probab=49.16 E-value=13 Score=45.66 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=66.6
Q ss_pred ccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCcce
Q psy7042 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEM 892 (2245)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (2245)
..|+..+..+.+...+|.|.|+.++.+..... ..++++.+..+ +...+++..++.+|....|.+++.+.+.++...+.
T Consensus 199 d~wei~r~~l~l~~~LG~G~FG~V~~g~~~~~-~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~pi 276 (468)
T KOG0197|consen 199 DPWEIPREELKLIRELGSGQFGEVWLGKWNGS-TKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPI 276 (468)
T ss_pred CCeeecHHHHHHHHHhcCCccceEEEEEEcCC-CcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCce
Confidence 35666677788899999999999999876654 34566666665 33445555899999999999999999999988877
Q ss_pred EEEEEEe
Q psy7042 893 VLIFEVL 899 (2245)
Q Consensus 893 ~~~~~~~ 899 (2245)
.+.++..
T Consensus 277 yIVtE~m 283 (468)
T KOG0197|consen 277 YIVTEYM 283 (468)
T ss_pred EEEEEec
Confidence 7777765
No 473
>PHA03052 Hypothetical protein; Provisional
Probab=48.03 E-value=53 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCceEEcCCCeEEEEEEEe-cCC--CceEEEeeCceeeecC
Q psy7042 190 PNALYIPEGDNTKVKIFYA-GDQ--PMEVSLTKNGRVVQSD 227 (2245)
Q Consensus 190 ~~~~~v~~G~~~~l~C~~~-g~p--~~~i~W~~~g~~l~~~ 227 (2245)
|..+.+..|.+++|.|.|. |.| .+.+.|.-|+..+...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 4667888999999999986 333 6678899999888433
No 474
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=47.55 E-value=35 Score=42.82 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=60.6
Q ss_pred ccccccccceecccccccccccCceeEEEEeeecc-----cCCeeEEEeeccCCc-hhhhhhheeeeeeeccC-CCceEe
Q psy7042 809 QPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERK-----TGNIFAAKFIPVSHN-LEKELIRKEIDIMNQLH-HPKLIN 881 (2245)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 881 (2245)
.+.+..|...+..+.+...+|.|.|+.+|.+.... ....++++....... .....+..++.++.... |++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~ 105 (401)
T cd05107 26 LPYDSAWEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVN 105 (401)
T ss_pred CCCCCcceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEE
Confidence 34455677778888899999999999999987543 234567777654322 22335667888888775 999998
Q ss_pred ecccccCCcceEEEE
Q psy7042 882 LHDAFEDDDEMVLIF 896 (2245)
Q Consensus 882 ~~~~~~~~~~~~~~~ 896 (2245)
+.+.+.......+..
T Consensus 106 ~~~~~~~~~~~~iv~ 120 (401)
T cd05107 106 LLGACTKGGPIYIIT 120 (401)
T ss_pred EEEEEccCCCcEEEE
Confidence 887766554443333
No 475
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=46.49 E-value=33 Score=43.94 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred ccceEEeC--CCcCCceEEEEEEEEeccccCCCcCCCCcccccCcccCCCceEEeeccceeeecCccEEEEEEEEee--C
Q psy7042 2040 APSQINIP--NLIEGRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGC--P 2115 (2245)
Q Consensus 2040 ~~~~l~i~--~l~~~~~~~y~c~a~n~~g~~~~~~~s~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~--P 2115 (2245)
....|.|. .|.++..|.+++.+.+..+... ...+.+....++....+...|... ...-..++|.|...-. .
T Consensus 258 ~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~----~a~~~~~~n~pP~~g~c~v~P~~G-~al~T~Ft~~c~~~~d~~~ 332 (440)
T PF02010_consen 258 SSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSG----SASISFTVNAPPSGGSCSVSPSSG-YALETTFTITCSGWTDDDQ 332 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc----cccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 34456665 5889999999999988766432 233333333333334555555432 3334678999975322 2
Q ss_pred CCeEEEee
Q psy7042 2116 KPTISWLK 2123 (2245)
Q Consensus 2116 ~p~i~W~~ 2123 (2245)
+..|.|+.
T Consensus 333 pL~Y~f~~ 340 (440)
T PF02010_consen 333 PLTYQFYY 340 (440)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34577766
No 476
>KOG0200|consensus
Probab=46.25 E-value=1.9e+02 Score=38.58 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=65.7
Q ss_pred eeceEEECCCccCCcEEEEEEEEcCCCCCCCCCccccEEEeeccCCCCCceec-CCcceEEeCCCeEEEEEEEeeecCCc
Q psy7042 43 LECSFSVLNLVEGNDYEFRIIAVNAIGKSEPSICTTPVKICEFVGGEKPDFIV-PLKDLVVPLGKLLTLQCEATGTPVPK 121 (2245)
Q Consensus 43 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~~~v~~~~~~~~P~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~ 121 (2245)
....+.+..+...|.|.|.|.+.| .. .. ..+. ......+.+.. .+.......+....+ +...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~~-----~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--IN-----LI--ISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPF 77 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--Cc-----ee--eEee-cccCcccccccCCCCCcceeeccccee---eeecCCCc
Confidence 456788999999999999999998 10 00 1111 11112222333 234445556666666 33333667
Q ss_pred eEEEECCeec----cCCC-----eE-------EEEEcCcEEEEEEeeeccCCCeEEEEEEEcCc
Q psy7042 122 CRWLRNGREI----SSGA-----RY-------RVETAGGVFRLHFNEVTDVDNGDYTCEAYNSV 169 (2245)
Q Consensus 122 i~W~~~g~~l----~~~~-----~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 169 (2245)
+.|.+..... .... .+ ... ++....+.+.++...+.|.|.|.+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 140 (609)
T KOG0200|consen 78 IKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLV-DGTFESGLIYNVSLTEAGEYLCWTGRTV 140 (609)
T ss_pred ceeeeeecccccccCcchhheeeeeeeeccccccc-cCceEeeeeeccChhhcceeeccCCCcc
Confidence 8887654321 0000 00 001 3345578899999999999999987733
No 477
>KOG0582|consensus
Probab=45.91 E-value=22 Score=42.62 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=67.9
Q ss_pred ccccceecccccccccccCceeEEEEeeecccCCeeEEEeeccCCch-hhhhhheeeeeeeccCCCceEeecccccCCcc
Q psy7042 813 IKTSSVYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNL-EKELIRKEIDIMNQLHHPKLINLHDAFEDDDE 891 (2245)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 891 (2245)
..|......|.+.+.+|.|....+|+++...++..++++.+....-. +...+.+++..|...+|+|++..+-.+..+.+
T Consensus 19 ~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~ 98 (516)
T KOG0582|consen 19 KEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSE 98 (516)
T ss_pred ccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecce
Confidence 35556677899999999999999999999999999999988776644 45889999999999999999998876665554
Q ss_pred eEEE
Q psy7042 892 MVLI 895 (2245)
Q Consensus 892 ~~~~ 895 (2245)
.-+.
T Consensus 99 LWvV 102 (516)
T KOG0582|consen 99 LWVV 102 (516)
T ss_pred eEEe
Confidence 4333
No 478
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=45.78 E-value=44 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=27.0
Q ss_pred ccccceEEcccceecceEEecCCCCCceEEEEEEEeccccCCC
Q psy7042 1273 SATGFWSKLSSFVRSPAYDVFGLETNRQYRFRVRAENQYGVSE 1315 (2245)
Q Consensus 1273 ~~~~~~~~~~~~~~~~~~~l~~L~~~t~Y~~~v~A~n~~G~~~ 1315 (2245)
..++.|........ .+.+++|.||+ |+|.|+|.+..|...
T Consensus 16 g~d~~W~~~~~~~~--~~~~~~L~~G~-Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 16 GFDDEWITLGSYSN--SISYTNLPPGK-YTLEVRAKDNNGKWS 55 (66)
T ss_dssp TTESSEEEESSTS---EEEEES--SEE-EEEEEEEEETTS-B-
T ss_pred CCCCeEEECCCCcE--EEEEEeCCCEE-EEEEEEEECCCCCcC
Confidence 34577876543332 89999998886 999999999888654
No 479
>KOG0597|consensus
Probab=45.52 E-value=11 Score=46.19 Aligned_cols=78 Identities=32% Similarity=0.581 Sum_probs=65.5
Q ss_pred ccccccccccCceeEEEEeeecccCCeeEEEeeccCC--chhhhhhheeeeeeeccCCCceEeecccccCCcceEEEEEE
Q psy7042 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIFEV 898 (2245)
Q Consensus 821 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 898 (2245)
+|-+.+.+|.|.|+.+|+.+...+.+.++.+++.-.. ..+...+..++.|+....|++++.+...++......+.++.
T Consensus 3 ~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~ 82 (808)
T KOG0597|consen 3 QYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEY 82 (808)
T ss_pred chhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehh
Confidence 4667788999999999999999999999999985433 33566788899999999999999999999888777766654
No 480
>KOG0662|consensus
Probab=44.46 E-value=13 Score=37.81 Aligned_cols=69 Identities=33% Similarity=0.612 Sum_probs=53.1
Q ss_pred ccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhh--hhheeeeeeeccCCCceEeecccccCC
Q psy7042 821 HYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKE--LIRKEIDIMNQLHHPKLINLHDAFEDD 889 (2245)
Q Consensus 821 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (2245)
.|+-.+.+|.|.|+.++..+.++++.+++++.....+.-+.- .-.+++.++....|.+++.+++....+
T Consensus 3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsd 73 (292)
T KOG0662|consen 3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD 73 (292)
T ss_pred chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccC
Confidence 466778999999999999999999999999998766543322 223467777788899998887654443
No 481
>PHA03281 envelope glycoprotein E; Provisional
Probab=44.34 E-value=5e+02 Score=32.46 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=46.0
Q ss_pred EEEeeeccCCCeEEEEEEecCceeeEE-EEEEEecCC-------CccccCC----------CceEEcCCCeEEEEEEEec
Q psy7042 1755 LHFNEVTDVDNGDYTCEAYNSVGFAHT-SSRVKIGTP-------PRIDRMP----------NALYIPEGDNTKVKIFYAG 1816 (2245)
Q Consensus 1755 L~i~~v~~~d~G~Y~C~~~n~~g~~~~-~~~l~V~~~-------p~~~~~~----------~~~~~~~g~~~~l~C~~~~ 1816 (2245)
|.|.+++.+++|.|+-......|.... .+.|.|..+ |.+...+ .......|+++.+......
T Consensus 300 L~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L~s 379 (642)
T PHA03281 300 LKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHLQY 379 (642)
T ss_pred eEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEEee
Confidence 999999999999999888866664444 455666432 2221111 2233456898887776554
Q ss_pred c--C---CcEEEEEE
Q psy7042 1817 D--Q---PMEVSLTK 1826 (2245)
Q Consensus 1817 ~--p---~~~v~W~~ 1826 (2245)
. . ..+|.|+.
T Consensus 380 ~ihD~pFsleI~Wyy 394 (642)
T PHA03281 380 KIHDAPFDLLLEWLY 394 (642)
T ss_pred eccCCCceeEEEEEE
Confidence 2 2 24788975
No 482
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=43.71 E-value=13 Score=47.56 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=19.1
Q ss_pred CceeecCCccc-CceEEEEEEeecCCCCCCCCCCCCcEEecCCcccCCCceeccccccccccccceeeEEEEeccC----
Q psy7042 434 PSQINIPNLIE-GRQYEFRVYAQNEAGLSLPSSASNSVQIKDPMAAKAPEIIVPLRNANAIQNHNAQFQCTITGCP---- 508 (2245)
Q Consensus 434 ~~~l~i~~l~~-~~~g~y~c~a~n~~g~~~~s~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p---- 508 (2245)
...|.|..... ...|.|++.+.-..+..........+.+.. .+..+.| .......+..++.+.|.....-.|
T Consensus 37 ~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~--s~l~~~I-~gG~~~~~~~~~~i~ldgs~S~Dpd~~~ 113 (440)
T PF02010_consen 37 TPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEP--SPLVAVI-KGGSSRTVGYNSDITLDGSQSYDPDGPP 113 (440)
T ss_dssp SSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred ceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEEEee--ccceeEE-cCCccceeecCceEEEeeEEEecccccc
Confidence 35677777544 446777777773222222223333444431 1111212 112223333445677766443333
Q ss_pred ---cCeEEEEeCCeecCCCc----cEEEEeeCCeEEEEEec--ccccCCceEEEEEEeCCC-CCCcceeEeEec--CCCC
Q psy7042 509 ---KPTISWLKGSREITPSA----RHHIFAEGDTYTLIINS--VYGVDADEYVCRAVNKGG-VKSTKAELIIMT--APKF 576 (2245)
Q Consensus 509 ---~~~v~W~~~~~~i~~~~----~~~~~~~~~~~~L~i~~--v~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~--~p~~ 576 (2245)
...+.|.-....-.... ............|.|.. +.+.....++..++...+ .......+.+.. +|.+
T Consensus 114 ~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v 193 (440)
T PF02010_consen 114 GDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTV 193 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCce
Confidence 24677875433222000 00111111222566643 333333334444444333 223334444432 2222
Q ss_pred CCCCCcccceEeeCCCeEEEEEeeeecC----CCeEEEEeC--------CeEeeccCeEEEEecCCeEEEEEc--CCCCC
Q psy7042 577 NVPPRFRDTAYFDKGENVVVKIPFTGYP----KPKITWYRD--------NEVIESGGHFHVETSERHAILTIR--DASNV 642 (2245)
Q Consensus 577 ~~~p~~~~~~~~~~g~~~~l~C~~~g~p----~~~i~W~~~--------~~~~~~~~~~~~~~~~~~~~l~i~--~~~~~ 642 (2245)
...........+..++.+.|.....+.+ ...+.|... ...+.... ...........|.|. .+.+.
T Consensus 194 ~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g 272 (440)
T PF02010_consen 194 SISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPG 272 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-cccccccccccccccccccccc
Confidence 2111111112366777777776555432 357889871 11111000 001111223456665 35556
Q ss_pred cCEEEEEEEEeCCCCc-eeEEEEEeeCCCCCCCCCeee----eecCCcEEEEeeCCCCCCCcccccEEEEe-eeCCCCCe
Q psy7042 643 DTAPYRVVAENDLGMD-SAIVKIQISDRPDPPQFPTVE----DIGHDSLALVWRAPIWDGGSNITNYIVEK-REHPMSSW 716 (2245)
Q Consensus 643 d~g~y~C~a~n~~g~~-~~~~~l~v~~~P~~p~~~~~~----~~~~~si~lsW~~p~~~~~~~~~~y~v~~-~~~~~~~w 716 (2245)
..|.+++.+.+..+.. .+.+.+.+..+|.. ..+.+. ....+.+.+++.--. +.+ ..+.|...+ .......|
T Consensus 273 ~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~-g~c~v~P~~G~al~T~Ft~~c~~~~-d~~-~pL~Y~f~~~~~~~~~~~ 349 (440)
T PF02010_consen 273 STYTFRLTVTDSSGSSGSASISFTVNAPPSG-GSCSVSPSSGYALETTFTITCSGWT-DDD-QPLTYQFYYSSDDGSGSW 349 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-ccc-cccccccccccccccccc
Confidence 6777778888776654 66667777555532 122221 234566777765211 222 256787777 33334444
Q ss_pred EEEc
Q psy7042 717 IRVG 720 (2245)
Q Consensus 717 ~~~~ 720 (2245)
..+.
T Consensus 350 ~~L~ 353 (440)
T PF02010_consen 350 NLLY 353 (440)
T ss_dssp ----
T ss_pred cccc
Confidence 4443
No 483
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.86 E-value=62 Score=27.43 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=28.7
Q ss_pred eecCccEEEEEEEEeeCCCeEEEee---C--CEeeCCCCcE-----EEEEeCcEEEEEEcCCCCCCCe
Q psy7042 2099 AIQNHNAQFQCTITGCPKPTISWLK---G--SREITPSARH-----HIFAEGDTYTLIINSVYGVDAD 2156 (2245)
Q Consensus 2099 ~~~g~~v~l~C~~~g~P~p~i~W~~---~--g~~l~~~~~~-----~~~~~~~~~~L~i~~v~~~d~G 2156 (2245)
+..|+.++|. |-|...++|+| | ...|-.+... ....++. .|+|-+|...+.|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~q--NLTLinVt~~~~G 63 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQ--NLTLINVTKTYNG 63 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEEecCCCCccccCCCCCccccceEeEecCC--eEEEEEecccccC
Confidence 5567766664 54556799994 2 2444433322 2344444 4666666665554
No 484
>KOG0194|consensus
Probab=41.82 E-value=32 Score=42.90 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=64.6
Q ss_pred cccceecccccccccccCceeEEEEeeecccCC---e-eEEEeecc---CCchhhhhhheeeeeeeccCCCceEeecccc
Q psy7042 814 KTSSVYDHYDILEEIGTGAFGVVHRCRERKTGN---I-FAAKFIPV---SHNLEKELIRKEIDIMNQLHHPKLINLHDAF 886 (2245)
Q Consensus 814 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (2245)
.|.-...+..+...+|.|+|+.++.......+. . ++++.... ........++.|..+|...+|.+++.+.+-+
T Consensus 151 ~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa 230 (474)
T KOG0194|consen 151 KWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVA 230 (474)
T ss_pred ccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 344444555566899999999999877666533 2 56666664 2244566888899999999999999999988
Q ss_pred cCCcceEEEEEEe
Q psy7042 887 EDDDEMVLIFEVL 899 (2245)
Q Consensus 887 ~~~~~~~~~~~~~ 899 (2245)
....+..+..+.-
T Consensus 231 ~~~~Pl~ivmEl~ 243 (474)
T KOG0194|consen 231 VLEEPLMLVMELC 243 (474)
T ss_pred cCCCccEEEEEec
Confidence 8888887777663
No 485
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=41.04 E-value=54 Score=41.15 Aligned_cols=91 Identities=25% Similarity=0.314 Sum_probs=62.6
Q ss_pred cCccccccccceecccccccccccCceeEEEEeeecccC-----CeeEEEeeccCC-chhhhhhheeeeeeeccC-CCce
Q psy7042 807 VPQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRERKTG-----NIFAAKFIPVSH-NLEKELIRKEIDIMNQLH-HPKL 879 (2245)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 879 (2245)
..-+.+-.|+.....|.+.+.+|.|.|+.+|.+.....+ ..++++...... ....+.+..++.++...+ |+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnI 103 (400)
T cd05105 24 MQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNI 103 (400)
T ss_pred ccCCCCCceeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCe
Confidence 334445577778888999999999999999998764332 246666664322 233445667888887774 9999
Q ss_pred EeecccccCCcceEEEEE
Q psy7042 880 INLHDAFEDDDEMVLIFE 897 (2245)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~ 897 (2245)
+.+.+.+.......+..+
T Consensus 104 v~l~~~~~~~~~~~lv~E 121 (400)
T cd05105 104 VNLLGACTKSGPIYIITE 121 (400)
T ss_pred eeEEEEEccCCceEEEEE
Confidence 999887766555444443
No 486
>KOG1225|consensus
Probab=40.21 E-value=82 Score=39.79 Aligned_cols=123 Identities=16% Similarity=0.002 Sum_probs=76.1
Q ss_pred CCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceE-EecceeeeceEEEecCCCCceeeEEEEEEec
Q psy7042 902 PHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWT-KVSSYVTTPFVRVRNLAIGSTYEFRVMAENQ 980 (2245)
Q Consensus 902 P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~~~y~~~v~a~n~ 980 (2245)
+.+|..+....-+..++.+.|... .....|...+.....+... ..........+.+..|+|++.|..++.+.-.
T Consensus 366 ~~~~~~~~~~~cs~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~ 440 (525)
T KOG1225|consen 366 VADPSLLLITECSPPSLCIAGVGR-----RRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAA 440 (525)
T ss_pred cCCchhhcccccCCCceeeccccc-----cccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhh
Confidence 345555555666777788888721 2334444444332111111 2223345677889999999999999998854
Q ss_pred cccCCCccccCcccccCCCCCCCCCCCCeeEeecCCeEEEEecCCCCCCCCccceEEEEE
Q psy7042 981 YGLSKPALTIDPIKAKHPFDVPGAPGAPKGVDSTEDSISLVWSKPRHDGGSPIQRYIVEK 1040 (2245)
Q Consensus 981 ~g~~~~s~~~~~~~~~t~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~y~v~~ 1040 (2245)
.-.+.+...+. ..+-.-+..+.+.....+++.+.|..|... ...|.++|
T Consensus 441 ~~~~~~~~~~~-------~~~~~~~g~~~v~~~~~~s~e~~g~~~s~~----~~~~~~~~ 489 (525)
T KOG1225|consen 441 NIGSLPKDKSE-------TTVLCWNGGLCVDGETESSLEVGGPCPSSG----TCGWEVRC 489 (525)
T ss_pred hhccCCccccc-------ceEeecCCceeeeeeeeccccccCCCCCcc----ccceEEEe
Confidence 43222221111 223345678888889999999999988754 46677777
No 487
>PLN02533 probable purple acid phosphatase
Probab=38.35 E-value=1.1e+02 Score=38.56 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCCCCCCCeeeeecCCcEEEEeeCCCCCCCcccccEEEEeeeCCCCCeEEEce-------------eeeeeEEEecCCCC
Q psy7042 669 RPDPPQFPTVEDIGHDSLALVWRAPIWDGGSNITNYIVEKREHPMSSWIRVGN-------------TRFTTMAITGLSPG 735 (2245)
Q Consensus 669 ~P~~p~~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~v~~~~~~~~~w~~~~~-------------~~~~~~~i~~L~p~ 735 (2245)
.+..|..+.+.-.+.+++.|+|.... ... -.|+|...+...+....+ .......|++|+|+
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQD--SIP----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN 113 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCC--CCC----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence 34556666666667889999999532 111 234554433322222111 12245789999999
Q ss_pred CEEEEEE
Q psy7042 736 HQYEFRV 742 (2245)
Q Consensus 736 t~y~~~v 742 (2245)
+.|.|+|
T Consensus 114 T~Y~Yrv 120 (427)
T PLN02533 114 TVYYYKC 120 (427)
T ss_pred CEEEEEE
Confidence 9999998
No 488
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=37.69 E-value=3.6e+02 Score=25.56 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecce----eeeceEEEecCCC----CceeeEEE
Q psy7042 904 PPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSSY----VTTPFVRVRNLAI----GSTYEFRV 975 (2245)
Q Consensus 904 ~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~~----~~~~~~~i~~L~p----~~~y~~~v 975 (2245)
.|++|++.-.+...+..+|.+-...- +-+.|.+.+.........+-... .......+..... ...|.+.|
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~--~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAP--PDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCS--TTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCC--CcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 36788888888999999999754332 45689998887554433322211 1233445555444 45799999
Q ss_pred EEEeccccC
Q psy7042 976 MAENQYGLS 984 (2245)
Q Consensus 976 ~a~n~~g~~ 984 (2245)
.+.+..|.-
T Consensus 79 ~~ss~~~~i 87 (99)
T PF09240_consen 79 NGSSSAGSI 87 (99)
T ss_dssp EEEETTEEE
T ss_pred EeccCCCcc
Confidence 999988853
No 489
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=35.89 E-value=1.9e+02 Score=25.04 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=40.1
Q ss_pred eEEEeeCCEeeCCCCcEEEEEeCcEEEEEEcCCCCCCCeEEEEEEEeCCceeeEEEEEEE
Q psy7042 2118 TISWLKGSREITPSARHHIFAEGDTYTLIINSVYGVDADEYVCRAVNKGGVKSTKAELII 2177 (2245)
Q Consensus 2118 ~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 2177 (2245)
...|+++|+.+..-. +.+. .+......-..+.+.+.|.+.+.+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~-l~i~-g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIP-LPIS-GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEE-Eecc-CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 478999998765322 1222 344455555666678999999999999998877766655
No 490
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.27 E-value=51 Score=41.08 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=15.7
Q ss_pred EEEEcCCCCCCCeEEEEEEE
Q psy7042 2144 TLIINSVYGVDADEYVCRAV 2163 (2245)
Q Consensus 2144 ~L~i~~v~~~d~G~Y~C~a~ 2163 (2245)
.|.+.++...++|.|.|++.
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVY 289 (439)
T ss_dssp SEEESS--GGG-EEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEE
Confidence 59999999999999999987
No 491
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=34.97 E-value=48 Score=41.35 Aligned_cols=89 Identities=24% Similarity=0.318 Sum_probs=62.3
Q ss_pred CccccccccceecccccccccccCceeEEEEeee-----cccCCeeEEEeeccCC-chhhhhhheeeeeeecc-CCCceE
Q psy7042 808 PQPVDIKTSSVYDHYDILEEIGTGAFGVVHRCRE-----RKTGNIFAAKFIPVSH-NLEKELIRKEIDIMNQL-HHPKLI 880 (2245)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 880 (2245)
.-+....|......|.+.+.+|.|.|+.+|.+.. .+++..++++...... ....+.+..++.++... +|++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv 102 (375)
T cd05104 23 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIV 102 (375)
T ss_pred CCCCccccccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCccee
Confidence 3455566777778899999999999999998863 3445567787765332 23344566788888777 899999
Q ss_pred eecccccCCcceEEEE
Q psy7042 881 NLHDAFEDDDEMVLIF 896 (2245)
Q Consensus 881 ~~~~~~~~~~~~~~~~ 896 (2245)
.+.+.+.......+..
T Consensus 103 ~l~~~~~~~~~~~lv~ 118 (375)
T cd05104 103 NLLGACTVGGPTLVIT 118 (375)
T ss_pred eeeeeeccCCcceeee
Confidence 9887766655444333
No 492
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=34.75 E-value=1.1e+03 Score=31.79 Aligned_cols=120 Identities=20% Similarity=0.252 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCcCEEEEEEEEeCCCCce--e-EEEEEeeCCCCCCC---CCeeeeecCCcEEEEeeCCCCCCCcccccEE
Q psy7042 632 AILTIRDASNVDTAPYRVVAENDLGMDS--A-IVKIQISDRPDPPQ---FPTVEDIGHDSLALVWRAPIWDGGSNITNYI 705 (2245)
Q Consensus 632 ~~l~i~~~~~~d~g~y~C~a~n~~g~~~--~-~~~l~v~~~P~~p~---~~~~~~~~~~si~lsW~~p~~~~~~~~~~y~ 705 (2245)
..+.+.++-. -.|..++.|.|..|..+ + +....+..+-.||. .+....+ ...+.+.|--|. +...+..-.
T Consensus 660 ~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dPt--~~~d~~~se 735 (952)
T COG4733 660 AGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDPT--GAVDITSTE 735 (952)
T ss_pred cceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecCC--cceEEeeee
Confidence 4466666665 34555677889888653 2 44555544433322 2222222 234555665332 111111112
Q ss_pred EEeeeCCCCCe--EEEceeeeeeEEEecCCCCCEEEEEEEEEecccCCCCCC
Q psy7042 706 VEKREHPMSSW--IRVGNTRFTTMAITGLSPGHQYEFRVYAENVYGRSDPST 755 (2245)
Q Consensus 706 v~~~~~~~~~w--~~~~~~~~~~~~i~~L~p~t~y~~~v~a~n~~G~~~~s~ 755 (2245)
+++........ ...+........-.+|+++..|.|+++++|..|...+.+
T Consensus 736 i~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 736 IRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred eeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccccce
Confidence 22222111111 001111111122268999999999999999999876655
No 493
>KOG0575|consensus
Probab=34.64 E-value=60 Score=40.86 Aligned_cols=79 Identities=27% Similarity=0.543 Sum_probs=66.0
Q ss_pred cccccccccccCceeEEEEeeecccCCeeEEEeecc---CCchhhhhhheeeeeeeccCCCceEeecccccCCcceEEEE
Q psy7042 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPV---SHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIF 896 (2245)
Q Consensus 820 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2245)
..|....-+|.|+|...|..+..++|..+|+|+++- -.....+-+..|+.+-...+|++++.+..-+.+...+.+..
T Consensus 18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL 97 (592)
T KOG0575|consen 18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL 97 (592)
T ss_pred ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence 457778899999999999999999999999999864 23345556667889999999999999999888888877777
Q ss_pred EE
Q psy7042 897 EV 898 (2245)
Q Consensus 897 ~~ 898 (2245)
+.
T Consensus 98 EL 99 (592)
T KOG0575|consen 98 EL 99 (592)
T ss_pred Ee
Confidence 65
No 494
>KOG0591|consensus
Probab=34.38 E-value=8.3 Score=42.78 Aligned_cols=67 Identities=30% Similarity=0.501 Sum_probs=54.8
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccCC--chhhhhhheeeeeeeccCCCceEeecc
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSH--NLEKELIRKEIDIMNQLHHPKLINLHD 884 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2245)
....|.+...+|.|.|+.+|++....++...+.+-+..+. ..+..+..+++.++....|+|++....
T Consensus 17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~ 85 (375)
T KOG0591|consen 17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYA 85 (375)
T ss_pred cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3446889999999999999999999998888776665433 346678888999999999999997654
No 495
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=34.33 E-value=1.4e+03 Score=31.53 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=24.8
Q ss_pred CCCeeeeccCCcEEEEeeCCCC--CCCccceeeEEEEec
Q psy7042 1336 GQPQIVDWDTNNATLMWDRPRT--DGGSKIQGYKMLLKT 1372 (2245)
Q Consensus 1336 ~~~~~~~~~~~s~~l~W~~p~~--~~g~~i~~y~i~~~~ 1372 (2245)
.+|++ ....+.+.|+|..|.+ |+| ....|.|.+..
T Consensus 760 tDL~~-~~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~ 796 (863)
T TIGR00868 760 TDLEA-GFQGDNIILTWTAPGDVLDHG-RADRYIIRIST 796 (863)
T ss_pred eeeEE-eecCCEEEEEeeCCCccCCCC-ccceEEEEecC
Confidence 34444 2445569999999986 555 67899999864
No 496
>KOG0605|consensus
Probab=34.20 E-value=49 Score=40.88 Aligned_cols=80 Identities=35% Similarity=0.639 Sum_probs=54.7
Q ss_pred ecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhhe---eeeeeeccCCCceEeecccccCCcceEEE
Q psy7042 819 YDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRK---EIDIMNQLHHPKLINLHDAFEDDDEMVLI 895 (2245)
Q Consensus 819 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (2245)
.+.+++...||.|+||.++-|+.+++|.+.|.+.+.-........... |=.++...+.+.++.+.=++-......++
T Consensus 140 ~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLi 219 (550)
T KOG0605|consen 140 LDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLI 219 (550)
T ss_pred cccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEE
Confidence 456778899999999999999999999999999987666554443332 33444445556666555444444444444
Q ss_pred EEE
Q psy7042 896 FEV 898 (2245)
Q Consensus 896 ~~~ 898 (2245)
.+.
T Consensus 220 MEy 222 (550)
T KOG0605|consen 220 MEY 222 (550)
T ss_pred EEe
Confidence 433
No 497
>KOG1948|consensus
Probab=32.54 E-value=7.8e+02 Score=32.88 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.3
Q ss_pred cccccccCCcEEEEEEEEE
Q psy7042 1093 NRVTSLIENHEYEFRVCAV 1111 (2245)
Q Consensus 1093 ~~i~~L~~~~~Y~~~v~A~ 1111 (2245)
|+|.+|.|+..|.+++.+.
T Consensus 948 yRiRGL~Pdc~Y~V~vk~~ 966 (1165)
T KOG1948|consen 948 YRIRGLLPDCEYQVHVKSY 966 (1165)
T ss_pred EEEeccCCCceEEEEEeec
Confidence 3799999999999999887
No 498
>PLN02533 probable purple acid phosphatase
Probab=32.35 E-value=1.5e+02 Score=37.39 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=43.2
Q ss_pred cCCCCCcccEEeeeeCceEEEEecCCCCCCCCccceEEEeeeecCCCceEEecc------------eeeeceEEEecCCC
Q psy7042 900 DRPHPPENLHADEFAGDSLTLYWTPPRDNGGSEITNYVVEKKDYNSTVWTKVSS------------YVTTPFVRVRNLAI 967 (2245)
Q Consensus 900 ~~P~~p~~l~~~~~~~~~~~l~W~~p~~~~g~~i~~y~i~~~~~~~~~~~~~~~------------~~~~~~~~i~~L~p 967 (2245)
..|..|+.+++.-...+++.|+|.-..... +. |+|....+.-...... ........|.+|+|
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~~~--~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQDSIP--PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECCCCCC--CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 356678888887667889999998764321 22 3343322111111100 01123468999999
Q ss_pred CceeeEEEE
Q psy7042 968 GSTYEFRVM 976 (2245)
Q Consensus 968 ~~~y~~~v~ 976 (2245)
++.|.|+|-
T Consensus 113 ~T~Y~Yrvg 121 (427)
T PLN02533 113 NTVYYYKCG 121 (427)
T ss_pred CCEEEEEEC
Confidence 999999993
No 499
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=32.32 E-value=43 Score=39.68 Aligned_cols=73 Identities=34% Similarity=0.573 Sum_probs=57.3
Q ss_pred eecccccccccccCceeEEEEeeecccCCeeEEEeeccCCchhhhhhheeeeeeeccCCCceEeecccccCCc
Q psy7042 818 VYDHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHNLEKELIRKEIDIMNQLHHPKLINLHDAFEDDD 890 (2245)
Q Consensus 818 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (2245)
+.+.|++...+|.|.|+.+|.+....++...+++..........+.+..++.++...+|++++...+.+....
T Consensus 3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~ 75 (280)
T cd06611 3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYEN 75 (280)
T ss_pred chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCC
Confidence 3456888999999999999999988888888888876665555556667788888888999988877655443
No 500
>KOG0580|consensus
Probab=32.30 E-value=60 Score=35.71 Aligned_cols=84 Identities=33% Similarity=0.514 Sum_probs=64.8
Q ss_pred cccccccccccCceeEEEEeeecccCCeeEEEeeccCCc---hhhhhhheeeeeeeccCCCceEeecccccCCcceEEEE
Q psy7042 820 DHYDILEEIGTGAFGVVHRCRERKTGNIFAAKFIPVSHN---LEKELIRKEIDIMNQLHHPKLINLHDAFEDDDEMVLIF 896 (2245)
Q Consensus 820 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2245)
+.+++-..+|.|-|+.+|-.+...++..++++...-.+- .-..++.+++.+-....|+++..+-+=+.+..-..+..
T Consensus 22 ~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLil 101 (281)
T KOG0580|consen 22 DDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLIL 101 (281)
T ss_pred hhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEE
Confidence 456777889999999999999999999999998765442 22346667888888999999888777777776666666
Q ss_pred EEecCCC
Q psy7042 897 EVLDRPH 903 (2245)
Q Consensus 897 ~~~~~P~ 903 (2245)
+....++
T Consensus 102 Eya~~ge 108 (281)
T KOG0580|consen 102 EYAPRGE 108 (281)
T ss_pred EecCCch
Confidence 6654443
Done!